Query 016700
Match_columns 384
No_of_seqs 392 out of 3126
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 1E-83 2.3E-88 611.2 25.3 310 13-352 10-335 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 4.3E-74 9.4E-79 563.3 29.5 308 13-350 9-328 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 3.6E-73 7.9E-78 570.1 29.6 309 13-352 9-329 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 1.5E-72 3.3E-77 572.2 29.0 311 11-352 9-342 (500)
5 TIGR02729 Obg_CgtA Obg family 100.0 8.9E-72 1.9E-76 546.3 28.7 306 13-349 8-328 (329)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 4.7E-71 1E-75 551.6 28.9 312 12-353 9-336 (390)
7 KOG1489 Predicted GTP-binding 100.0 3.3E-69 7.1E-74 506.3 21.0 309 6-346 41-363 (366)
8 PF01018 GTP1_OBG: GTP1/OBG; 100.0 1E-39 2.3E-44 285.3 4.4 140 13-175 8-156 (156)
9 cd01898 Obg Obg subfamily. Th 99.9 1.1E-24 2.4E-29 192.0 17.1 165 177-348 1-169 (170)
10 cd01881 Obg_like The Obg-like 99.9 2.9E-22 6.3E-27 177.1 12.9 161 181-348 1-175 (176)
11 cd01899 Ygr210 Ygr210 subfamil 99.9 5.4E-22 1.2E-26 193.5 14.9 175 179-353 1-272 (318)
12 COG1084 Predicted GTPase [Gene 99.9 4.5E-22 9.8E-27 189.6 12.9 159 175-348 167-334 (346)
13 TIGR00436 era GTP-binding prot 99.9 2.4E-21 5.2E-26 185.4 18.0 162 178-354 2-168 (270)
14 COG1163 DRG Predicted GTPase [ 99.9 1.3E-21 2.8E-26 185.8 13.2 162 177-350 64-289 (365)
15 PF02421 FeoB_N: Ferrous iron 99.9 3.3E-22 7.1E-27 175.4 8.4 151 177-345 1-156 (156)
16 PTZ00258 GTP-binding protein; 99.9 3.7E-21 8.1E-26 191.3 15.2 115 174-288 19-152 (390)
17 TIGR03156 GTP_HflX GTP-binding 99.9 4.5E-21 9.7E-26 189.8 15.6 161 175-348 188-350 (351)
18 COG1159 Era GTPase [General fu 99.9 7E-21 1.5E-25 179.9 16.1 164 178-355 8-177 (298)
19 PRK09602 translation-associate 99.9 4.9E-21 1.1E-25 192.0 15.8 176 177-353 2-274 (396)
20 COG0012 Predicted GTPase, prob 99.9 3.1E-21 6.7E-26 187.6 13.8 97 176-273 2-109 (372)
21 COG1160 Predicted GTPases [Gen 99.9 7.2E-21 1.6E-25 188.8 16.2 156 177-350 4-165 (444)
22 cd01897 NOG NOG1 is a nucleola 99.9 1.3E-20 2.8E-25 165.9 16.0 161 177-349 1-167 (168)
23 COG0486 ThdF Predicted GTPase 99.9 1.8E-21 3.8E-26 193.6 11.1 178 151-352 198-378 (454)
24 PRK11058 GTPase HflX; Provisio 99.9 5.2E-21 1.1E-25 193.6 14.5 164 175-350 196-362 (426)
25 cd01896 DRG The developmentall 99.8 3.1E-20 6.7E-25 174.1 15.2 160 177-350 1-226 (233)
26 cd01861 Rab6 Rab6 subfamily. 99.8 1.1E-19 2.3E-24 158.8 14.9 157 177-348 1-160 (161)
27 PRK15494 era GTPase Era; Provi 99.8 1.2E-19 2.6E-24 179.1 16.9 164 177-356 53-222 (339)
28 PRK09601 GTP-binding protein Y 99.8 8.2E-20 1.8E-24 179.9 15.0 96 177-272 3-107 (364)
29 cd01878 HflX HflX subfamily. 99.8 1.7E-19 3.7E-24 164.7 15.9 162 173-348 38-203 (204)
30 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.1E-19 2.4E-24 161.6 12.8 164 172-352 5-174 (205)
31 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2E-19 4.2E-24 164.3 14.7 164 177-352 1-170 (201)
32 cd01868 Rab11_like Rab11-like. 99.8 1.6E-19 3.4E-24 158.6 13.5 158 177-349 4-164 (165)
33 COG2262 HflX GTPases [General 99.8 6.7E-20 1.5E-24 179.5 11.9 165 174-351 190-357 (411)
34 cd04138 H_N_K_Ras_like H-Ras/N 99.8 3.5E-19 7.7E-24 154.8 15.2 158 177-349 2-161 (162)
35 cd04136 Rap_like Rap-like subf 99.8 2.7E-19 5.8E-24 156.4 14.4 158 177-349 2-162 (163)
36 cd01865 Rab3 Rab3 subfamily. 99.8 2.4E-19 5.2E-24 158.1 13.9 158 177-349 2-162 (165)
37 cd01864 Rab19 Rab19 subfamily. 99.8 2.4E-19 5.2E-24 157.8 13.9 158 176-348 3-164 (165)
38 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.3E-19 5E-24 157.7 13.4 153 178-347 1-166 (167)
39 cd04142 RRP22 RRP22 subfamily. 99.8 4E-19 8.6E-24 162.5 15.4 168 178-351 2-175 (198)
40 cd04109 Rab28 Rab28 subfamily. 99.8 3.9E-19 8.5E-24 164.3 15.4 163 177-351 1-167 (215)
41 cd04119 RJL RJL (RabJ-Like) su 99.8 4.5E-19 9.7E-24 155.1 15.0 160 177-349 1-166 (168)
42 cd04120 Rab12 Rab12 subfamily. 99.8 3.5E-19 7.5E-24 163.5 14.7 157 178-350 2-163 (202)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 4.5E-19 9.7E-24 156.1 14.8 159 176-349 2-163 (166)
44 cd01867 Rab8_Rab10_Rab13_like 99.8 4.1E-19 9E-24 156.9 14.5 159 176-349 3-164 (167)
45 PRK00089 era GTPase Era; Revie 99.8 7.2E-19 1.6E-23 169.9 17.5 163 178-354 7-175 (292)
46 COG1160 Predicted GTPases [Gen 99.8 2.6E-19 5.6E-24 177.8 14.3 187 175-375 177-376 (444)
47 TIGR03594 GTPase_EngA ribosome 99.8 5.8E-19 1.2E-23 179.3 16.9 162 176-351 172-345 (429)
48 cd01866 Rab2 Rab2 subfamily. 99.8 6E-19 1.3E-23 156.1 14.9 159 176-349 4-165 (168)
49 cd04122 Rab14 Rab14 subfamily. 99.8 5.9E-19 1.3E-23 155.6 14.7 158 176-349 2-163 (166)
50 PRK03003 GTP-binding protein D 99.8 4.5E-19 9.7E-24 182.4 15.9 187 175-375 210-407 (472)
51 cd04112 Rab26 Rab26 subfamily. 99.8 3.8E-19 8.2E-24 161.1 13.4 160 177-351 1-164 (191)
52 cd04114 Rab30 Rab30 subfamily. 99.8 5.2E-19 1.1E-23 155.8 13.9 161 174-349 5-168 (169)
53 cd04113 Rab4 Rab4 subfamily. 99.8 7.7E-19 1.7E-23 153.6 14.8 157 177-348 1-160 (161)
54 cd04158 ARD1 ARD1 subfamily. 99.8 5.3E-19 1.1E-23 156.9 13.8 155 178-352 1-163 (169)
55 cd01894 EngA1 EngA1 subfamily. 99.8 7E-19 1.5E-23 152.2 14.0 151 180-348 1-156 (157)
56 cd04157 Arl6 Arl6 subfamily. 99.8 7.5E-19 1.6E-23 153.3 13.9 153 178-347 1-161 (162)
57 PRK05291 trmE tRNA modificatio 99.8 2.5E-19 5.4E-24 183.0 12.1 158 172-350 211-370 (449)
58 cd04175 Rap1 Rap1 subgroup. T 99.8 1E-18 2.2E-23 153.5 14.2 157 177-349 2-162 (164)
59 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1.6E-18 3.4E-23 151.6 15.4 158 177-349 3-163 (164)
60 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.1E-18 2.3E-23 153.6 14.0 151 177-347 1-158 (159)
61 cd04124 RabL2 RabL2 subfamily. 99.8 1.6E-18 3.5E-23 152.4 15.0 153 177-349 1-157 (161)
62 cd04121 Rab40 Rab40 subfamily. 99.8 1.4E-18 3.1E-23 157.7 15.0 159 175-350 5-167 (189)
63 smart00178 SAR Sar1p-like memb 99.8 9.8E-19 2.1E-23 157.7 13.4 153 176-348 17-183 (184)
64 cd04116 Rab9 Rab9 subfamily. 99.8 2.4E-18 5.3E-23 152.0 15.5 160 176-348 5-169 (170)
65 smart00175 RAB Rab subfamily o 99.8 1.7E-18 3.7E-23 151.2 14.4 157 177-349 1-161 (164)
66 cd01863 Rab18 Rab18 subfamily. 99.8 2.3E-18 4.9E-23 150.5 15.1 158 177-348 1-160 (161)
67 cd04171 SelB SelB subfamily. 99.8 5.2E-18 1.1E-22 148.0 17.0 151 178-347 2-163 (164)
68 cd01879 FeoB Ferrous iron tran 99.8 1.3E-18 2.9E-23 151.0 13.1 151 181-348 1-155 (158)
69 cd04144 Ras2 Ras2 subfamily. 99.8 1.2E-18 2.6E-23 157.7 13.1 159 178-350 1-163 (190)
70 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.8E-18 6.2E-23 150.3 15.1 158 177-349 1-163 (164)
71 PRK00093 GTP-binding protein D 99.8 2.3E-18 5E-23 175.3 16.8 161 175-350 172-344 (435)
72 smart00173 RAS Ras subfamily o 99.8 2.2E-18 4.8E-23 151.0 14.4 158 177-349 1-161 (164)
73 cd00879 Sar1 Sar1 subfamily. 99.8 1.9E-18 4.1E-23 155.7 14.3 153 176-348 19-189 (190)
74 cd04149 Arf6 Arf6 subfamily. 99.8 1.4E-18 3E-23 154.4 13.0 151 177-347 10-167 (168)
75 cd04123 Rab21 Rab21 subfamily. 99.8 3.1E-18 6.8E-23 148.9 14.7 158 177-349 1-161 (162)
76 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.6E-18 3.6E-23 153.6 13.1 151 178-347 1-166 (167)
77 cd04154 Arl2 Arl2 subfamily. 99.8 1.8E-18 3.9E-23 153.8 13.4 151 177-347 15-172 (173)
78 PRK03003 GTP-binding protein D 99.8 1.7E-18 3.6E-23 178.2 15.1 160 174-351 36-200 (472)
79 cd04106 Rab23_lke Rab23-like s 99.8 3.8E-18 8.1E-23 149.1 15.1 158 177-348 1-161 (162)
80 cd00154 Rab Rab family. Rab G 99.8 4.1E-18 9E-23 146.6 15.0 155 177-346 1-158 (159)
81 PLN00223 ADP-ribosylation fact 99.8 2.4E-18 5.2E-23 154.9 13.8 155 176-350 17-178 (181)
82 cd04127 Rab27A Rab27a subfamil 99.8 3.2E-18 6.9E-23 152.6 14.5 166 176-349 4-176 (180)
83 cd04117 Rab15 Rab15 subfamily. 99.8 3.6E-18 7.9E-23 150.3 14.6 153 178-348 2-160 (161)
84 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.3E-18 5E-23 153.6 13.5 152 176-347 15-173 (174)
85 cd04140 ARHI_like ARHI subfami 99.8 3.2E-18 7E-23 150.9 14.3 157 177-347 2-162 (165)
86 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.7E-18 5.8E-23 153.7 13.9 155 177-348 2-173 (175)
87 cd04151 Arl1 Arl1 subfamily. 99.8 2.4E-18 5.3E-23 150.4 13.1 149 178-347 1-157 (158)
88 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.3E-18 5E-23 148.7 12.8 153 177-349 2-156 (157)
89 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.5E-18 5.3E-23 175.0 14.9 160 172-350 199-360 (442)
90 cd01862 Rab7 Rab7 subfamily. 99.8 3.9E-18 8.5E-23 150.3 14.3 162 177-351 1-168 (172)
91 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.1E-17 2.3E-22 146.9 17.0 155 177-349 1-165 (168)
92 cd04176 Rap2 Rap2 subgroup. T 99.8 3.4E-18 7.3E-23 149.9 13.7 158 177-349 2-162 (163)
93 cd04110 Rab35 Rab35 subfamily. 99.8 4.2E-18 9E-23 155.5 14.6 160 176-351 6-168 (199)
94 smart00177 ARF ARF-like small 99.8 3.3E-18 7.2E-23 152.9 13.7 154 176-349 13-173 (175)
95 cd01900 YchF YchF subfamily. 99.8 7.1E-19 1.5E-23 168.0 9.7 114 179-292 1-133 (274)
96 PRK09518 bifunctional cytidyla 99.8 4.7E-18 1E-22 182.8 17.2 185 176-375 450-646 (712)
97 PLN03110 Rab GTPase; Provision 99.8 3.3E-18 7.2E-23 158.4 13.8 160 175-350 11-174 (216)
98 cd04146 RERG_RasL11_like RERG/ 99.8 2.5E-18 5.4E-23 151.3 12.4 158 178-349 1-163 (165)
99 cd00878 Arf_Arl Arf (ADP-ribos 99.8 4.9E-18 1.1E-22 148.1 13.8 150 178-347 1-157 (158)
100 cd01895 EngA2 EngA2 subfamily. 99.8 1.6E-17 3.4E-22 145.5 17.1 157 177-347 3-172 (174)
101 KOG0078 GTP-binding protein SE 99.8 6.5E-18 1.4E-22 152.1 14.4 160 174-351 10-175 (207)
102 cd04111 Rab39 Rab39 subfamily. 99.8 6.9E-18 1.5E-22 155.7 15.0 160 177-350 3-166 (211)
103 cd04132 Rho4_like Rho4-like su 99.8 7.2E-18 1.6E-22 151.5 14.8 158 178-351 2-168 (187)
104 cd01860 Rab5_related Rab5-rela 99.8 8.2E-18 1.8E-22 147.1 14.8 156 177-349 2-162 (163)
105 cd04115 Rab33B_Rab33A Rab33B/R 99.8 6.2E-18 1.3E-22 149.9 14.0 159 176-349 2-168 (170)
106 cd04125 RabA_like RabA-like su 99.8 5.7E-18 1.2E-22 152.7 14.0 159 177-350 1-162 (188)
107 cd04126 Rab20 Rab20 subfamily. 99.8 5.2E-18 1.1E-22 157.7 13.8 154 177-350 1-190 (220)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.2E-18 9E-23 153.4 12.8 163 177-353 4-173 (183)
109 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1E-17 2.2E-22 149.1 14.9 159 177-350 1-165 (170)
110 cd01890 LepA LepA subfamily. 99.8 1.9E-17 4.2E-22 147.2 16.7 156 178-349 2-176 (179)
111 cd00876 Ras Ras family. The R 99.8 9.2E-18 2E-22 145.6 14.0 156 178-348 1-159 (160)
112 cd04133 Rop_like Rop subfamily 99.8 8E-18 1.7E-22 151.1 14.0 156 177-349 2-172 (176)
113 cd00877 Ran Ran (Ras-related n 99.8 8E-18 1.7E-22 149.1 13.6 157 177-350 1-159 (166)
114 cd04118 Rab24 Rab24 subfamily. 99.8 9.6E-18 2.1E-22 151.6 14.4 158 177-350 1-166 (193)
115 PTZ00369 Ras-like protein; Pro 99.8 5.3E-18 1.1E-22 153.4 12.7 160 177-351 6-168 (189)
116 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 8.7E-18 1.9E-22 149.9 13.7 158 177-350 3-164 (172)
117 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.1E-17 2.3E-22 156.7 14.8 158 176-350 13-188 (232)
118 cd04134 Rho3 Rho3 subfamily. 99.8 7.2E-18 1.6E-22 152.6 13.2 159 177-352 1-176 (189)
119 PLN03118 Rab family protein; P 99.8 9.9E-18 2.1E-22 154.3 14.3 163 175-352 13-179 (211)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.3E-17 2.7E-22 145.6 14.3 151 178-347 1-159 (160)
121 PF01926 MMR_HSR1: 50S ribosom 99.8 4.3E-18 9.2E-23 141.8 10.7 113 178-305 1-116 (116)
122 PRK04213 GTP-binding protein; 99.8 3.1E-17 6.6E-22 149.4 17.2 158 176-351 9-193 (201)
123 cd01892 Miro2 Miro2 subfamily. 99.8 7.2E-18 1.6E-22 149.9 12.6 160 174-350 2-166 (169)
124 cd04163 Era Era subfamily. Er 99.8 2.6E-17 5.6E-22 142.7 15.7 158 177-348 4-167 (168)
125 PLN03071 GTP-binding nuclear p 99.8 1.2E-17 2.7E-22 155.0 14.4 157 177-352 14-174 (219)
126 cd01875 RhoG RhoG subfamily. 99.8 1.1E-17 2.5E-22 151.7 13.8 157 177-351 4-178 (191)
127 cd04139 RalA_RalB RalA/RalB su 99.8 1.8E-17 3.9E-22 144.5 14.6 158 177-349 1-161 (164)
128 PLN03108 Rab family protein; P 99.8 1.4E-17 2.9E-22 153.5 14.5 161 175-350 5-168 (210)
129 cd01871 Rac1_like Rac1-like su 99.8 1.4E-17 3E-22 148.9 14.0 155 177-348 2-173 (174)
130 cd04131 Rnd Rnd subfamily. Th 99.8 1.3E-17 2.9E-22 149.8 14.0 155 177-348 2-174 (178)
131 cd04177 RSR1 RSR1 subgroup. R 99.8 1.3E-17 2.9E-22 147.4 13.4 159 177-350 2-164 (168)
132 PTZ00133 ADP-ribosylation fact 99.8 1.1E-17 2.5E-22 150.6 13.2 154 176-349 17-177 (182)
133 TIGR03594 GTPase_EngA ribosome 99.7 1.4E-17 3E-22 169.1 15.2 156 178-351 1-161 (429)
134 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.8E-17 3.8E-22 149.7 14.2 155 177-348 6-178 (182)
135 PRK00093 GTP-binding protein D 99.7 2.1E-17 4.6E-22 168.2 16.4 154 177-348 2-160 (435)
136 smart00174 RHO Rho (Ras homolo 99.7 1.4E-17 3.1E-22 147.4 13.0 154 179-349 1-171 (174)
137 cd04143 Rhes_like Rhes_like su 99.7 1.6E-17 3.6E-22 157.0 14.0 158 178-349 2-170 (247)
138 cd04128 Spg1 Spg1p. Spg1p (se 99.7 2.8E-17 6.2E-22 148.2 14.9 157 177-351 1-167 (182)
139 cd01893 Miro1 Miro1 subfamily. 99.7 3.1E-17 6.6E-22 144.9 14.9 154 178-349 2-163 (166)
140 cd04159 Arl10_like Arl10-like 99.7 1.8E-17 3.8E-22 142.9 12.9 151 178-347 1-158 (159)
141 cd04147 Ras_dva Ras-dva subfam 99.7 2.8E-17 6.2E-22 149.8 14.5 159 178-351 1-164 (198)
142 cd04135 Tc10 TC10 subfamily. 99.7 2.5E-17 5.4E-22 145.9 13.1 155 178-349 2-173 (174)
143 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.9E-17 4.1E-22 146.5 11.8 148 178-346 1-162 (164)
144 cd04155 Arl3 Arl3 subfamily. 99.7 2.8E-17 6.1E-22 145.4 12.7 152 176-347 14-172 (173)
145 cd01870 RhoA_like RhoA-like su 99.7 3.2E-17 7E-22 145.3 12.9 156 177-349 2-174 (175)
146 cd04148 RGK RGK subfamily. Th 99.7 3.9E-17 8.4E-22 151.8 13.3 158 177-350 1-163 (221)
147 cd04103 Centaurin_gamma Centau 99.7 5.8E-17 1.3E-21 142.8 13.7 150 178-348 2-157 (158)
148 KOG1491 Predicted GTP-binding 99.7 1.3E-17 2.9E-22 159.2 10.0 113 177-289 21-152 (391)
149 TIGR03598 GTPase_YsxC ribosome 99.7 8.2E-17 1.8E-21 144.3 14.3 147 175-338 17-178 (179)
150 KOG0092 GTPase Rab5/YPT51 and 99.7 2.2E-17 4.9E-22 146.4 10.4 159 176-355 5-172 (200)
151 KOG0095 GTPase Rab30, small G 99.7 4.7E-17 1E-21 138.5 11.8 162 173-351 4-170 (213)
152 cd04137 RheB Rheb (Ras Homolog 99.7 5.2E-17 1.1E-21 144.9 12.8 160 177-351 2-164 (180)
153 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 9.1E-17 2E-21 149.5 14.8 156 177-349 2-175 (222)
154 cd01889 SelB_euk SelB subfamil 99.7 1.5E-16 3.3E-21 144.1 15.9 160 177-349 1-185 (192)
155 cd00157 Rho Rho (Ras homology) 99.7 1E-16 2.2E-21 141.1 14.3 154 177-347 1-170 (171)
156 cd04130 Wrch_1 Wrch-1 subfamil 99.7 7.4E-17 1.6E-21 143.4 13.1 153 177-346 1-170 (173)
157 PRK09518 bifunctional cytidyla 99.7 5.1E-17 1.1E-21 174.8 14.1 162 172-351 271-437 (712)
158 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 1.7E-16 3.6E-21 141.0 14.6 164 177-354 23-189 (221)
159 cd00881 GTP_translation_factor 99.7 3.2E-16 7E-21 139.8 16.7 151 178-349 1-186 (189)
160 PRK00454 engB GTP-binding prot 99.7 3.1E-16 6.6E-21 141.7 16.5 159 175-350 23-194 (196)
161 cd01873 RhoBTB RhoBTB subfamil 99.7 1.2E-16 2.6E-21 145.8 13.7 157 177-347 3-193 (195)
162 PRK09554 feoB ferrous iron tra 99.7 1.3E-16 2.8E-21 171.9 16.0 157 177-349 4-167 (772)
163 TIGR02528 EutP ethanolamine ut 99.7 7.4E-17 1.6E-21 138.4 11.3 137 178-346 2-141 (142)
164 COG0370 FeoB Fe2+ transport sy 99.7 8.1E-17 1.8E-21 166.6 13.6 158 177-351 4-165 (653)
165 TIGR00092 GTP-binding protein 99.7 4.9E-17 1.1E-21 160.4 11.4 115 177-291 3-137 (368)
166 TIGR00231 small_GTP small GTP- 99.7 2.8E-16 6E-21 134.3 14.7 155 177-346 2-160 (161)
167 cd00880 Era_like Era (E. coli 99.7 3.1E-16 6.8E-21 134.0 14.8 155 181-348 1-162 (163)
168 PF00025 Arf: ADP-ribosylation 99.7 6.4E-17 1.4E-21 144.9 10.8 154 175-348 13-174 (175)
169 KOG0073 GTP-binding ADP-ribosy 99.7 2.4E-16 5.3E-21 136.2 13.6 157 176-351 16-179 (185)
170 KOG0080 GTPase Rab18, small G 99.7 6.5E-17 1.4E-21 139.2 9.9 164 175-354 10-178 (209)
171 KOG1191 Mitochondrial GTPase [ 99.7 3.2E-17 6.8E-22 163.2 8.9 170 172-350 264-450 (531)
172 KOG0087 GTPase Rab11/YPT3, sma 99.7 6.6E-17 1.4E-21 145.3 9.8 164 172-350 10-176 (222)
173 KOG0098 GTPase Rab2, small G p 99.7 1.2E-16 2.6E-21 140.9 10.9 158 176-350 6-168 (216)
174 KOG1423 Ras-like GTPase ERA [C 99.7 1.6E-16 3.5E-21 150.0 12.2 168 175-355 71-276 (379)
175 PF00071 Ras: Ras family; Int 99.7 2E-16 4.3E-21 138.3 11.9 155 178-349 1-160 (162)
176 KOG0394 Ras-related GTPase [Ge 99.7 7.6E-17 1.6E-21 141.9 9.0 159 174-351 7-179 (210)
177 smart00176 RAN Ran (Ras-relate 99.7 3.8E-16 8.2E-21 143.2 13.8 151 182-351 1-155 (200)
178 cd04129 Rho2 Rho2 subfamily. 99.7 3.6E-16 7.8E-21 141.1 12.8 158 177-351 2-174 (187)
179 COG0218 Predicted GTPase [Gene 99.7 2.9E-15 6.3E-20 134.9 17.2 159 175-350 23-197 (200)
180 cd01891 TypA_BipA TypA (tyrosi 99.7 2.3E-15 5.1E-20 136.6 16.7 142 176-338 2-170 (194)
181 PRK15467 ethanolamine utilizat 99.7 6.4E-16 1.4E-20 136.3 12.3 142 178-351 3-148 (158)
182 KOG1486 GTP-binding protein DR 99.7 3.9E-16 8.5E-21 143.7 10.8 90 177-274 63-152 (364)
183 KOG0079 GTP-binding protein H- 99.6 6.3E-16 1.4E-20 131.5 9.6 160 174-350 6-169 (198)
184 TIGR00437 feoB ferrous iron tr 99.6 9.8E-16 2.1E-20 161.3 13.4 149 183-348 1-153 (591)
185 PF00009 GTP_EFTU: Elongation 99.6 1.4E-15 3E-20 137.6 12.3 157 174-349 1-186 (188)
186 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.6E-15 3.5E-20 139.6 12.5 143 178-340 1-184 (208)
187 cd01876 YihA_EngB The YihA (En 99.6 9.2E-15 2E-19 127.0 15.0 154 178-348 1-169 (170)
188 cd01888 eIF2_gamma eIF2-gamma 99.6 1E-14 2.2E-19 133.8 15.8 162 178-351 2-200 (203)
189 TIGR00487 IF-2 translation ini 99.6 6.5E-15 1.4E-19 154.5 16.4 151 175-347 86-247 (587)
190 KOG0093 GTPase Rab3, small G p 99.6 5.1E-15 1.1E-19 125.9 12.1 162 173-349 18-182 (193)
191 KOG1490 GTP-binding protein CR 99.6 6.2E-16 1.3E-20 153.9 7.6 161 177-350 169-341 (620)
192 KOG0070 GTP-binding ADP-ribosy 99.6 1.2E-15 2.6E-20 134.9 8.5 155 176-350 17-178 (181)
193 cd00882 Ras_like_GTPase Ras-li 99.6 6.4E-15 1.4E-19 124.1 11.5 152 181-346 1-156 (157)
194 KOG0091 GTPase Rab39, small G 99.6 4.4E-15 9.6E-20 128.3 10.4 155 177-349 9-172 (213)
195 PRK05306 infB translation init 99.6 1.7E-14 3.7E-19 155.1 16.1 153 174-347 288-449 (787)
196 KOG0086 GTPase Rab4, small G p 99.6 1.3E-14 2.8E-19 124.1 11.7 160 173-349 6-170 (214)
197 TIGR01393 lepA GTP-binding pro 99.6 2.4E-14 5.2E-19 150.8 16.3 161 176-352 3-182 (595)
198 PF08477 Miro: Miro-like prote 99.6 2.1E-15 4.6E-20 125.4 6.2 115 178-307 1-119 (119)
199 CHL00189 infB translation init 99.6 1.9E-14 4.1E-19 153.5 14.8 158 174-348 242-408 (742)
200 PTZ00132 GTP-binding nuclear p 99.6 4.1E-14 8.9E-19 130.5 15.0 159 177-352 10-170 (215)
201 KOG0075 GTP-binding ADP-ribosy 99.6 1.1E-14 2.3E-19 124.0 9.0 155 174-349 18-181 (186)
202 PLN00023 GTP-binding protein; 99.6 4.8E-14 1E-18 136.9 14.8 125 177-310 22-165 (334)
203 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.9E-14 6.3E-19 130.9 12.4 124 177-311 1-144 (202)
204 cd04105 SR_beta Signal recogni 99.6 3.9E-14 8.5E-19 130.0 12.9 121 177-311 1-124 (203)
205 TIGR00475 selB selenocysteine- 99.6 6.1E-14 1.3E-18 147.6 16.0 151 178-349 2-165 (581)
206 PF10662 PduV-EutP: Ethanolami 99.6 7.4E-14 1.6E-18 120.4 13.3 138 177-346 2-142 (143)
207 PRK12317 elongation factor 1-a 99.5 4E-14 8.7E-19 144.0 13.4 146 175-340 5-195 (425)
208 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.4E-13 3E-18 125.7 15.6 140 177-337 3-170 (195)
209 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3.7E-14 7.9E-19 129.2 11.5 162 178-350 2-184 (196)
210 KOG0410 Predicted GTP binding 99.5 1.7E-14 3.7E-19 137.2 8.8 163 172-350 174-341 (410)
211 cd01883 EF1_alpha Eukaryotic e 99.5 8.5E-14 1.8E-18 129.2 12.0 142 178-339 1-194 (219)
212 TIGR00491 aIF-2 translation in 99.5 2.9E-13 6.4E-18 142.0 16.7 121 177-310 5-135 (590)
213 PRK05433 GTP-binding protein L 99.5 3E-13 6.5E-18 142.7 16.6 162 174-351 5-185 (600)
214 COG3596 Predicted GTPase [Gene 99.5 1.7E-13 3.8E-18 128.4 12.9 168 174-353 37-225 (296)
215 cd01886 EF-G Elongation factor 99.5 1.2E-13 2.7E-18 132.2 11.6 126 178-324 1-146 (270)
216 PRK10218 GTP-binding protein; 99.5 5.8E-13 1.3E-17 140.2 17.4 158 174-352 3-197 (607)
217 KOG0076 GTP-binding ADP-ribosy 99.5 5E-14 1.1E-18 123.1 7.7 162 174-352 15-189 (197)
218 KOG0088 GTPase Rab21, small G 99.5 4.7E-14 1E-18 121.4 6.4 161 176-353 13-178 (218)
219 TIGR01394 TypA_BipA GTP-bindin 99.5 8.7E-13 1.9E-17 138.9 16.7 155 177-352 2-193 (594)
220 cd04168 TetM_like Tet(M)-like 99.5 6.8E-13 1.5E-17 124.7 14.3 126 178-324 1-146 (237)
221 cd04170 EF-G_bact Elongation f 99.5 1.7E-13 3.6E-18 131.0 9.9 124 178-322 1-144 (268)
222 KOG0071 GTP-binding ADP-ribosy 99.5 4.4E-13 9.5E-18 113.3 11.2 152 177-350 18-178 (180)
223 COG1100 GTPase SAR1 and relate 99.5 1E-12 2.2E-17 120.8 14.8 158 177-350 6-185 (219)
224 KOG1487 GTP-binding protein DR 99.5 6.6E-14 1.4E-18 129.6 6.6 162 177-350 60-281 (358)
225 TIGR03680 eif2g_arch translati 99.5 7.4E-13 1.6E-17 133.9 14.8 162 177-350 5-196 (406)
226 PRK12736 elongation factor Tu; 99.5 1.3E-12 2.8E-17 131.7 16.2 156 174-350 10-201 (394)
227 TIGR00483 EF-1_alpha translati 99.5 5.6E-13 1.2E-17 135.6 13.8 146 175-340 6-197 (426)
228 PRK10512 selenocysteinyl-tRNA- 99.5 1.4E-12 3.1E-17 137.9 16.9 151 179-349 3-165 (614)
229 KOG0074 GTP-binding ADP-ribosy 99.4 2.6E-13 5.6E-18 114.8 8.1 154 177-350 18-179 (185)
230 PF09439 SRPRB: Signal recogni 99.4 3.8E-13 8.3E-18 120.7 9.6 119 177-311 4-127 (181)
231 PRK04004 translation initiatio 99.4 2.6E-12 5.6E-17 135.2 17.4 120 177-309 7-136 (586)
232 cd04169 RF3 RF3 subfamily. Pe 99.4 1.7E-12 3.6E-17 124.2 14.5 125 177-322 3-151 (267)
233 PRK09866 hypothetical protein; 99.4 4.2E-12 9E-17 131.6 18.4 113 231-349 230-352 (741)
234 CHL00071 tufA elongation facto 99.4 1.4E-12 3E-17 132.1 14.6 131 175-326 11-162 (409)
235 PRK12735 elongation factor Tu; 99.4 2.3E-12 5E-17 129.9 15.8 155 174-349 10-202 (396)
236 KOG0395 Ras-related GTPase [Ge 99.4 7.7E-13 1.7E-17 120.8 11.1 160 177-351 4-166 (196)
237 cd04167 Snu114p Snu114p subfam 99.4 2.5E-12 5.4E-17 118.7 14.1 116 178-309 2-136 (213)
238 cd01885 EF2 EF2 (for archaea a 99.4 2.6E-12 5.7E-17 119.6 14.3 119 178-309 2-138 (222)
239 PRK04000 translation initiatio 99.4 2.2E-12 4.7E-17 130.7 14.8 163 176-350 9-201 (411)
240 cd04165 GTPBP1_like GTPBP1-lik 99.4 5.9E-12 1.3E-16 117.4 16.3 103 231-346 84-219 (224)
241 PLN03127 Elongation factor Tu; 99.4 7.4E-12 1.6E-16 127.9 17.9 119 174-313 59-194 (447)
242 PRK00049 elongation factor Tu; 99.4 5.8E-12 1.3E-16 127.0 16.6 155 174-349 10-202 (396)
243 KOG0097 GTPase Rab14, small G 99.4 1.9E-12 4.1E-17 109.5 10.9 159 174-349 9-172 (215)
244 cd01853 Toc34_like Toc34-like 99.4 1.7E-12 3.7E-17 122.9 11.5 129 172-310 27-163 (249)
245 TIGR00485 EF-Tu translation el 99.4 6.5E-12 1.4E-16 126.6 16.4 132 174-326 10-162 (394)
246 COG2229 Predicted GTPase [Gene 99.4 8.5E-12 1.8E-16 110.4 14.7 154 176-348 10-176 (187)
247 cd04104 p47_IIGP_like p47 (47- 99.4 5E-12 1.1E-16 115.4 13.8 154 177-351 2-185 (197)
248 PRK05506 bifunctional sulfate 99.4 4E-12 8.7E-17 135.4 13.3 147 174-340 22-211 (632)
249 KOG3883 Ras family small GTPas 99.4 1.1E-11 2.5E-16 106.2 13.3 167 175-353 8-178 (198)
250 TIGR00484 EF-G translation elo 99.4 6E-12 1.3E-16 135.3 14.6 128 174-322 8-155 (689)
251 PRK05124 cysN sulfate adenylyl 99.4 4.8E-12 1E-16 130.3 13.3 148 174-341 25-216 (474)
252 KOG0083 GTPase Rab26/Rab37, sm 99.3 2.9E-13 6.2E-18 113.5 2.2 153 181-350 2-160 (192)
253 PLN03126 Elongation factor Tu; 99.3 1.1E-11 2.3E-16 127.5 14.2 133 174-327 79-232 (478)
254 TIGR02034 CysN sulfate adenyly 99.3 1.1E-11 2.5E-16 125.3 14.1 143 178-340 2-187 (406)
255 KOG0462 Elongation factor-type 99.3 1E-11 2.2E-16 125.3 13.3 163 172-352 56-237 (650)
256 TIGR00991 3a0901s02IAP34 GTP-b 99.3 7.3E-12 1.6E-16 121.0 11.4 126 175-310 37-167 (313)
257 PF00350 Dynamin_N: Dynamin fa 99.3 1.1E-11 2.4E-16 109.3 11.2 68 231-306 101-168 (168)
258 PRK12739 elongation factor G; 99.3 1.2E-11 2.6E-16 133.0 13.4 128 174-322 6-153 (691)
259 TIGR00503 prfC peptide chain r 99.3 2.6E-11 5.6E-16 126.2 14.9 131 172-323 7-161 (527)
260 PRK00007 elongation factor G; 99.3 2E-11 4.2E-16 131.4 14.2 128 174-322 8-155 (693)
261 PRK00741 prfC peptide chain re 99.3 2E-11 4.4E-16 126.9 13.9 130 172-322 6-159 (526)
262 KOG0081 GTPase Rab27, small G 99.3 2.6E-12 5.6E-17 110.8 5.3 166 175-350 8-181 (219)
263 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 2.2E-11 4.8E-16 113.8 12.0 160 178-350 1-176 (232)
264 PRK13768 GTPase; Provisional 99.3 2E-11 4.3E-16 115.9 11.3 115 231-350 97-247 (253)
265 cd01850 CDC_Septin CDC/Septin. 99.3 6.4E-11 1.4E-15 113.9 14.6 139 177-328 5-178 (276)
266 COG0532 InfB Translation initi 99.3 5.5E-11 1.2E-15 120.6 14.0 153 177-349 6-169 (509)
267 PTZ00099 rab6; Provisional 99.3 2E-11 4.4E-16 109.6 9.6 111 232-351 30-143 (176)
268 KOG0077 Vesicle coat complex C 99.3 2.1E-11 4.5E-16 106.0 8.7 119 174-311 18-136 (193)
269 KOG0393 Ras-related small GTPa 99.2 1.2E-11 2.7E-16 111.8 7.3 158 177-351 5-180 (198)
270 KOG1532 GTPase XAB1, interacts 99.2 1E-11 2.2E-16 116.1 6.6 116 232-352 117-266 (366)
271 TIGR02836 spore_IV_A stage IV 99.2 1.3E-10 2.8E-15 115.3 14.6 163 177-350 18-237 (492)
272 PRK13351 elongation factor G; 99.2 7.3E-11 1.6E-15 127.0 13.9 128 174-322 6-153 (687)
273 COG0481 LepA Membrane GTPase L 99.2 5.8E-11 1.3E-15 118.3 11.7 164 172-353 5-189 (603)
274 KOG0090 Signal recognition par 99.2 4.7E-11 1E-15 108.1 9.8 117 177-311 39-160 (238)
275 PTZ00327 eukaryotic translatio 99.2 2.2E-10 4.8E-15 117.2 15.6 163 177-351 35-234 (460)
276 PTZ00141 elongation factor 1- 99.2 1.4E-10 3.1E-15 118.6 13.7 145 176-340 7-203 (446)
277 smart00053 DYNc Dynamin, GTPas 99.2 2.1E-10 4.5E-15 107.8 13.7 76 231-311 125-207 (240)
278 PF04548 AIG1: AIG1 family; I 99.2 1.2E-10 2.6E-15 107.7 11.0 124 178-311 2-131 (212)
279 KOG4252 GTP-binding protein [S 99.2 3E-11 6.4E-16 106.2 5.6 160 172-350 16-181 (246)
280 KOG1145 Mitochondrial translat 99.2 9.5E-10 2.1E-14 111.3 15.9 152 174-347 151-313 (683)
281 PLN00043 elongation factor 1-a 99.1 4.6E-10 9.9E-15 114.9 13.6 146 175-340 6-203 (447)
282 cd01882 BMS1 Bms1. Bms1 is an 99.1 7E-10 1.5E-14 103.5 13.5 107 177-312 40-149 (225)
283 KOG0072 GTP-binding ADP-ribosy 99.1 1.1E-10 2.5E-15 99.2 6.7 153 177-349 19-178 (182)
284 KOG1954 Endocytosis/signaling 99.1 7.2E-10 1.6E-14 107.5 12.4 144 177-325 59-240 (532)
285 PF03029 ATP_bind_1: Conserved 99.1 8.2E-11 1.8E-15 110.7 5.5 75 232-310 92-170 (238)
286 TIGR00490 aEF-2 translation el 99.1 5.9E-10 1.3E-14 120.5 11.7 118 174-310 17-152 (720)
287 PTZ00416 elongation factor 2; 99.1 1E-09 2.2E-14 120.3 12.9 123 174-309 17-157 (836)
288 PRK12740 elongation factor G; 99.0 1.5E-09 3.3E-14 116.6 13.0 109 182-311 1-127 (668)
289 PLN00116 translation elongatio 99.0 2E-09 4.4E-14 118.1 14.1 123 174-309 17-163 (843)
290 TIGR00993 3a0901s04IAP86 chlor 99.0 1.4E-09 3.1E-14 113.4 11.6 128 173-310 115-250 (763)
291 KOG1707 Predicted Ras related/ 99.0 1.5E-09 3.3E-14 110.6 11.3 158 175-350 8-175 (625)
292 COG4917 EutP Ethanolamine util 99.0 2.1E-09 4.5E-14 89.6 9.8 141 177-349 2-145 (148)
293 COG5256 TEF1 Translation elong 99.0 2.5E-09 5.3E-14 105.6 11.3 146 176-340 7-201 (428)
294 PRK07560 elongation factor EF- 98.9 5.7E-09 1.2E-13 113.1 12.3 119 174-309 18-152 (731)
295 PRK09435 membrane ATPase/prote 98.9 9.1E-09 2E-13 101.1 12.5 100 231-350 149-260 (332)
296 TIGR00750 lao LAO/AO transport 98.9 8.3E-09 1.8E-13 100.4 11.4 100 231-350 127-238 (300)
297 PRK14845 translation initiatio 98.9 1.7E-08 3.6E-13 111.7 14.6 147 188-347 473-670 (1049)
298 cd04178 Nucleostemin_like Nucl 98.9 3E-09 6.5E-14 95.3 6.4 55 176-241 117-172 (172)
299 COG1217 TypA Predicted membran 98.9 4.9E-08 1.1E-12 97.4 14.6 157 175-352 4-197 (603)
300 cd01858 NGP_1 NGP-1. Autoanti 98.8 6.5E-09 1.4E-13 91.2 6.6 54 177-241 103-157 (157)
301 COG0480 FusA Translation elong 98.8 4.4E-08 9.5E-13 104.5 13.4 119 173-311 7-143 (697)
302 PF03308 ArgK: ArgK protein; 98.8 3.7E-09 8E-14 99.3 3.8 98 232-349 123-229 (266)
303 KOG1144 Translation initiation 98.8 6.4E-08 1.4E-12 100.9 11.8 158 177-347 476-684 (1064)
304 cd01855 YqeH YqeH. YqeH is an 98.7 1.3E-08 2.8E-13 92.1 5.9 54 177-241 128-190 (190)
305 KOG4423 GTP-binding protein-li 98.7 1.4E-09 2.9E-14 96.5 -0.8 168 175-354 24-198 (229)
306 PF05049 IIGP: Interferon-indu 98.7 3.5E-08 7.5E-13 98.0 8.9 158 175-353 34-221 (376)
307 COG1161 Predicted GTPases [Gen 98.7 1.4E-08 3E-13 99.7 5.8 57 177-244 133-190 (322)
308 COG2895 CysN GTPases - Sulfate 98.7 5E-08 1.1E-12 94.5 9.3 129 174-322 4-166 (431)
309 PF00735 Septin: Septin; Inte 98.7 5.4E-08 1.2E-12 93.8 9.6 139 177-328 5-177 (281)
310 cd01849 YlqF_related_GTPase Yl 98.7 3.1E-08 6.8E-13 86.7 6.5 56 175-241 99-155 (155)
311 COG5257 GCD11 Translation init 98.7 1.6E-07 3.4E-12 90.1 11.6 167 177-354 11-206 (415)
312 COG4108 PrfC Peptide chain rel 98.7 1.5E-07 3.3E-12 93.5 11.4 130 172-322 8-161 (528)
313 TIGR03597 GTPase_YqeH ribosome 98.7 5.1E-08 1.1E-12 97.2 8.2 87 176-273 154-249 (360)
314 COG1703 ArgK Putative periplas 98.7 6.9E-08 1.5E-12 92.1 8.4 153 178-350 53-254 (323)
315 COG3276 SelB Selenocysteine-sp 98.7 5.2E-07 1.1E-11 90.0 14.8 151 179-349 3-161 (447)
316 PRK09563 rbgA GTPase YlqF; Rev 98.7 4.3E-08 9.2E-13 94.8 6.9 60 175-245 120-180 (287)
317 KOG1547 Septin CDC10 and relat 98.7 3.4E-07 7.4E-12 84.6 12.2 143 177-331 47-222 (336)
318 TIGR03596 GTPase_YlqF ribosome 98.6 5E-08 1.1E-12 93.8 6.5 58 176-244 118-176 (276)
319 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 6.1E-08 1.3E-12 83.6 6.2 54 178-242 85-139 (141)
320 KOG0461 Selenocysteine-specifi 98.6 6.4E-07 1.4E-11 86.6 13.4 160 177-352 8-195 (522)
321 TIGR00073 hypB hydrogenase acc 98.6 4.6E-07 1E-11 83.3 11.6 156 173-348 19-205 (207)
322 KOG0458 Elongation factor 1 al 98.6 3.7E-07 7.9E-12 93.6 11.8 147 175-340 176-372 (603)
323 KOG3886 GTP-binding protein [S 98.6 9.7E-08 2.1E-12 87.7 6.4 121 177-311 5-131 (295)
324 KOG1673 Ras GTPases [General f 98.5 2E-07 4.4E-12 80.5 6.8 160 177-353 21-189 (205)
325 PRK13796 GTPase YqeH; Provisio 98.5 1.2E-07 2.5E-12 94.8 6.0 58 176-244 160-223 (365)
326 TIGR00101 ureG urease accessor 98.5 7.1E-07 1.5E-11 81.8 10.7 98 232-349 93-195 (199)
327 KOG0468 U5 snRNP-specific prot 98.5 2.3E-07 4.9E-12 95.9 7.3 119 175-309 127-262 (971)
328 COG0050 TufB GTPases - transla 98.5 1.9E-06 4.2E-11 81.9 12.9 134 174-328 10-164 (394)
329 cd01856 YlqF YlqF. Proteins o 98.5 2.8E-07 6.2E-12 82.0 6.6 55 176-241 115-170 (171)
330 KOG1424 Predicted GTP-binding 98.5 1.2E-07 2.7E-12 95.7 4.5 58 176-244 314-372 (562)
331 KOG0096 GTPase Ran/TC4/GSP1 (n 98.4 1.7E-07 3.6E-12 83.6 4.3 158 175-351 9-170 (216)
332 COG5019 CDC3 Septin family pro 98.4 3.4E-06 7.3E-11 82.6 12.7 130 177-313 24-179 (373)
333 cd01851 GBP Guanylate-binding 98.4 1.1E-06 2.4E-11 82.0 8.9 92 176-273 7-103 (224)
334 PRK10463 hydrogenase nickel in 98.4 1.4E-07 3.1E-12 90.7 2.9 53 295-347 229-286 (290)
335 cd03112 CobW_like The function 98.4 8.5E-07 1.8E-11 78.2 7.0 71 230-308 86-158 (158)
336 cd01859 MJ1464 MJ1464. This f 98.3 1.2E-06 2.6E-11 76.5 6.5 55 176-241 101-156 (156)
337 KOG2486 Predicted GTPase [Gene 98.3 3.1E-06 6.7E-11 80.0 9.3 156 175-347 135-313 (320)
338 TIGR00157 ribosome small subun 98.3 5.6E-06 1.2E-10 78.3 10.1 86 258-348 33-121 (245)
339 PRK12288 GTPase RsgA; Reviewed 98.3 1.2E-06 2.5E-11 87.0 5.6 57 178-245 207-271 (347)
340 PRK12289 GTPase RsgA; Reviewed 98.2 1.5E-06 3.1E-11 86.4 5.6 56 178-244 174-237 (352)
341 KOG2655 Septin family protein 98.2 3.1E-05 6.6E-10 76.4 14.6 126 177-313 22-175 (366)
342 cd01859 MJ1464 MJ1464. This f 98.2 1.2E-05 2.6E-10 70.2 9.6 89 254-349 4-95 (156)
343 KOG0448 Mitofusin 1 GTPase, in 98.2 2.4E-05 5.1E-10 81.8 12.9 141 174-325 107-291 (749)
344 cd01855 YqeH YqeH. YqeH is an 98.1 5.3E-06 1.1E-10 75.0 7.1 91 251-349 24-124 (190)
345 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.3E-05 2.9E-10 70.1 9.1 88 256-348 3-93 (157)
346 TIGR00157 ribosome small subun 98.1 2.6E-06 5.7E-11 80.5 4.8 56 177-244 121-184 (245)
347 KOG2484 GTPase [General functi 98.0 3E-06 6.5E-11 83.5 3.6 64 172-246 248-312 (435)
348 COG0378 HypB Ni2+-binding GTPa 98.0 7.8E-06 1.7E-10 73.8 5.8 75 264-348 120-199 (202)
349 PF03193 DUF258: Protein of un 98.0 6.7E-06 1.4E-10 72.7 4.6 57 177-244 36-100 (161)
350 PRK00098 GTPase RsgA; Reviewed 98.0 1.2E-05 2.5E-10 78.3 6.3 57 176-243 164-228 (298)
351 cd01856 YlqF YlqF. Proteins o 98.0 3.2E-05 6.9E-10 68.8 8.4 89 252-349 10-100 (171)
352 TIGR03348 VI_IcmF type VI secr 98.0 1.6E-05 3.4E-10 90.6 7.9 140 173-318 108-266 (1169)
353 KOG0467 Translation elongation 97.9 5.5E-05 1.2E-09 79.9 10.6 129 175-322 8-156 (887)
354 COG5192 BMS1 GTP-binding prote 97.9 2.6E-05 5.7E-10 79.7 7.9 118 178-322 71-189 (1077)
355 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.5E-05 9.8E-10 65.6 8.4 78 253-335 3-82 (141)
356 cd03114 ArgK-like The function 97.9 0.00015 3.2E-09 63.3 11.5 57 231-307 92-148 (148)
357 KOG2423 Nucleolar GTPase [Gene 97.9 5.4E-06 1.2E-10 81.6 2.6 60 175-245 306-366 (572)
358 PF02492 cobW: CobW/HypB/UreG, 97.9 4E-05 8.6E-10 68.8 7.9 137 179-325 3-170 (178)
359 KOG1533 Predicted GTPase [Gene 97.9 3.1E-05 6.7E-10 71.7 7.1 77 231-310 97-177 (290)
360 PRK00098 GTPase RsgA; Reviewed 97.9 6.5E-05 1.4E-09 73.1 9.3 84 259-347 78-164 (298)
361 KOG0447 Dynamin-like GTP bindi 97.9 0.00019 4.2E-09 73.3 12.6 75 232-311 413-494 (980)
362 KOG1707 Predicted Ras related/ 97.9 0.00011 2.4E-09 75.8 11.0 157 174-351 423-584 (625)
363 TIGR01425 SRP54_euk signal rec 97.9 0.00018 3.9E-09 73.1 12.5 69 231-310 183-253 (429)
364 PRK12289 GTPase RsgA; Reviewed 97.8 8.8E-05 1.9E-09 73.8 9.9 86 258-349 86-174 (352)
365 KOG3887 Predicted small GTPase 97.8 6.4E-05 1.4E-09 69.9 7.9 123 176-312 27-151 (347)
366 PRK10416 signal recognition pa 97.8 0.00014 3.1E-09 71.3 11.0 98 232-341 198-301 (318)
367 cd01849 YlqF_related_GTPase Yl 97.8 0.00011 2.3E-09 64.3 9.0 80 263-348 1-83 (155)
368 TIGR03596 GTPase_YlqF ribosome 97.8 7.1E-05 1.5E-09 72.0 8.4 88 253-349 13-102 (276)
369 KOG1534 Putative transcription 97.8 1.7E-05 3.8E-10 72.2 3.7 79 230-311 97-179 (273)
370 cd01854 YjeQ_engC YjeQ/EngC. 97.8 2.7E-05 5.9E-10 75.3 5.3 56 177-243 162-225 (287)
371 PRK09563 rbgA GTPase YlqF; Rev 97.8 7.1E-05 1.5E-09 72.4 7.8 98 237-349 6-105 (287)
372 KOG2485 Conserved ATP/GTP bind 97.7 4E-05 8.7E-10 73.7 5.4 64 175-246 142-211 (335)
373 cd03110 Fer4_NifH_child This p 97.7 0.00075 1.6E-08 60.1 13.2 81 231-328 93-173 (179)
374 TIGR02475 CobW cobalamin biosy 97.7 0.00017 3.6E-09 71.6 9.5 25 175-199 3-27 (341)
375 TIGR00064 ftsY signal recognit 97.7 0.0004 8.6E-09 66.8 11.8 100 231-341 155-259 (272)
376 cd00066 G-alpha G protein alph 97.7 9.1E-05 2E-09 72.7 7.3 71 232-310 162-242 (317)
377 COG1162 Predicted GTPases [Gen 97.7 5.4E-05 1.2E-09 73.0 5.5 56 178-244 166-229 (301)
378 KOG0465 Mitochondrial elongati 97.7 7.5E-05 1.6E-09 77.2 6.8 119 172-311 35-171 (721)
379 smart00275 G_alpha G protein a 97.6 0.00014 3E-09 72.2 7.9 71 232-310 185-265 (342)
380 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00023 5E-09 68.9 8.8 83 259-347 76-161 (287)
381 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00014 3.1E-09 52.7 5.2 47 256-307 10-58 (58)
382 KOG0464 Elongation factor G [T 97.6 3E-05 6.4E-10 76.8 2.1 127 175-322 36-182 (753)
383 PF00448 SRP54: SRP54-type pro 97.6 0.00032 7E-09 64.1 8.8 95 232-338 85-179 (196)
384 COG0523 Putative GTPases (G3E 97.6 0.00061 1.3E-08 67.0 11.0 84 232-328 86-176 (323)
385 KOG1143 Predicted translation 97.6 0.00037 8E-09 68.5 9.0 144 177-331 168-341 (591)
386 PRK11537 putative GTP-binding 97.5 0.00026 5.6E-09 69.6 7.9 136 175-325 3-176 (318)
387 smart00010 small_GTPase Small 97.5 0.00034 7.4E-09 57.6 7.6 90 177-309 1-90 (124)
388 PRK14974 cell division protein 97.5 0.00057 1.2E-08 67.6 10.3 96 232-342 224-322 (336)
389 PRK11889 flhF flagellar biosyn 97.5 0.00048 1E-08 69.1 9.4 98 232-343 322-421 (436)
390 PRK14722 flhF flagellar biosyn 97.5 0.00027 6E-09 70.7 7.2 158 176-342 137-324 (374)
391 KOG3859 Septins (P-loop GTPase 97.5 0.00086 1.9E-08 63.7 10.0 125 176-313 42-193 (406)
392 TIGR03597 GTPase_YqeH ribosome 97.5 0.00032 7E-09 70.1 7.6 89 251-347 53-150 (360)
393 PRK12727 flagellar biosynthesi 97.4 0.0012 2.6E-08 68.6 11.6 97 231-342 429-527 (559)
394 PRK12288 GTPase RsgA; Reviewed 97.4 0.0011 2.3E-08 66.0 10.8 86 259-349 118-207 (347)
395 cd03115 SRP The signal recogni 97.4 0.0016 3.5E-08 57.7 11.0 71 232-311 84-154 (173)
396 cd02038 FleN-like FleN is a me 97.4 0.0026 5.6E-08 54.6 11.8 106 181-309 5-110 (139)
397 PRK05703 flhF flagellar biosyn 97.4 0.0012 2.6E-08 67.4 11.2 100 232-342 301-400 (424)
398 PRK13796 GTPase YqeH; Provisio 97.3 0.00057 1.2E-08 68.4 7.8 86 255-348 62-157 (365)
399 COG3640 CooC CO dehydrogenase 97.3 0.00065 1.4E-08 63.2 7.4 46 259-309 153-198 (255)
400 COG3523 IcmF Type VI protein s 97.3 0.00042 9E-09 77.8 7.4 133 177-319 126-280 (1188)
401 COG5258 GTPBP1 GTPase [General 97.3 0.002 4.3E-08 63.8 11.1 124 175-311 116-270 (527)
402 PRK12726 flagellar biosynthesi 97.3 0.0013 2.8E-08 65.8 9.9 95 232-340 287-383 (407)
403 KOG0460 Mitochondrial translat 97.3 0.0015 3.3E-08 63.7 9.9 134 174-328 52-206 (449)
404 KOG3905 Dynein light intermedi 97.3 0.0043 9.2E-08 60.3 12.9 26 175-200 51-76 (473)
405 PRK14723 flhF flagellar biosyn 97.3 0.0014 3.1E-08 70.8 10.8 96 232-338 265-362 (767)
406 KOG0466 Translation initiation 97.3 0.00037 8.1E-09 66.8 5.3 112 232-354 126-245 (466)
407 PRK14721 flhF flagellar biosyn 97.3 0.0022 4.7E-08 65.2 11.0 96 232-342 271-369 (420)
408 cd03111 CpaE_like This protein 97.3 0.0035 7.5E-08 51.4 10.3 104 179-305 2-106 (106)
409 PRK12724 flagellar biosynthesi 97.2 0.0018 3.8E-08 65.7 9.9 102 232-344 301-404 (432)
410 PRK00771 signal recognition pa 97.2 0.0025 5.4E-08 65.2 10.3 68 232-310 177-246 (437)
411 PRK06731 flhF flagellar biosyn 97.2 0.0023 5E-08 61.4 9.5 99 232-344 156-256 (270)
412 PRK06995 flhF flagellar biosyn 97.1 0.0021 4.5E-08 66.4 9.3 95 232-338 336-430 (484)
413 PRK12723 flagellar biosynthesi 97.1 0.006 1.3E-07 61.5 11.9 100 232-342 256-355 (388)
414 KOG0469 Elongation factor 2 [T 97.1 0.0017 3.7E-08 66.1 7.8 136 174-324 17-184 (842)
415 COG1419 FlhF Flagellar GTP-bin 97.0 0.0036 7.7E-08 62.8 9.8 154 176-342 203-381 (407)
416 PRK01889 GTPase RsgA; Reviewed 97.0 0.00065 1.4E-08 67.8 4.4 61 172-243 191-259 (356)
417 PF00004 AAA: ATPase family as 97.0 0.0019 4E-08 53.8 6.4 21 179-199 1-21 (132)
418 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0087 1.9E-07 46.5 9.0 72 179-276 2-73 (99)
419 PF05783 DLIC: Dynein light in 96.8 0.005 1.1E-07 63.5 9.2 55 296-350 196-264 (472)
420 cd02036 MinD Bacterial cell di 96.8 0.021 4.5E-07 50.3 12.1 65 232-310 64-128 (179)
421 cd02042 ParA ParA and ParB of 96.8 0.0097 2.1E-07 48.0 8.9 71 179-273 2-73 (104)
422 TIGR03263 guanyl_kin guanylate 96.7 0.0024 5.1E-08 56.8 4.8 41 178-218 3-44 (180)
423 PRK01889 GTPase RsgA; Reviewed 96.6 0.0077 1.7E-07 60.1 8.7 84 259-347 110-194 (356)
424 PRK10867 signal recognition pa 96.6 0.013 2.8E-07 60.0 10.1 21 177-197 101-121 (433)
425 PF07015 VirC1: VirC1 protein; 96.6 0.016 3.5E-07 54.1 9.9 99 232-342 85-186 (231)
426 COG1618 Predicted nucleotide k 96.6 0.05 1.1E-06 48.1 12.1 25 174-198 3-27 (179)
427 KOG0463 GTP-binding protein GP 96.6 0.016 3.5E-07 57.3 9.9 23 177-199 134-156 (641)
428 PRK13695 putative NTPase; Prov 96.6 0.031 6.6E-07 49.6 11.1 23 177-199 1-23 (174)
429 KOG2484 GTPase [General functi 96.5 0.0068 1.5E-07 60.3 7.3 70 251-325 136-205 (435)
430 cd00071 GMPK Guanosine monopho 96.5 0.0037 8.1E-08 53.6 4.4 40 179-218 2-43 (137)
431 cd04178 Nucleostemin_like Nucl 96.4 0.0078 1.7E-07 53.8 6.5 58 263-325 1-58 (172)
432 TIGR00959 ffh signal recogniti 96.4 0.024 5.1E-07 58.0 10.8 68 232-310 184-253 (428)
433 PRK14737 gmk guanylate kinase; 96.4 0.0032 6.9E-08 57.0 3.9 42 179-220 7-49 (186)
434 KOG0705 GTPase-activating prot 96.4 0.0056 1.2E-07 63.0 5.8 153 177-351 31-190 (749)
435 KOG1424 Predicted GTP-binding 96.1 0.012 2.5E-07 60.4 6.4 72 249-327 162-235 (562)
436 PF00005 ABC_tran: ABC transpo 96.0 0.0031 6.8E-08 53.3 1.7 30 171-200 6-35 (137)
437 cd00009 AAA The AAA+ (ATPases 96.0 0.036 7.8E-07 45.9 8.0 23 177-199 20-42 (151)
438 PRK14738 gmk guanylate kinase; 95.9 0.0077 1.7E-07 55.3 3.7 41 178-218 15-56 (206)
439 COG0194 Gmk Guanylate kinase [ 95.8 0.0046 9.9E-08 55.7 1.9 43 178-221 6-49 (191)
440 PF13207 AAA_17: AAA domain; P 95.8 0.008 1.7E-07 49.6 3.1 22 178-199 1-22 (121)
441 KOG0459 Polypeptide release fa 95.7 0.023 5.1E-07 56.7 6.5 151 174-343 77-279 (501)
442 PF00503 G-alpha: G-protein al 95.7 0.0077 1.7E-07 60.7 3.2 70 232-309 237-316 (389)
443 cd03116 MobB Molybdenum is an 95.7 0.0093 2E-07 52.7 3.3 22 178-199 3-24 (159)
444 KOG0082 G-protein alpha subuni 95.7 0.015 3.3E-07 57.6 4.9 72 232-310 196-276 (354)
445 KOG0446 Vacuolar sorting prote 95.6 0.0099 2.2E-07 63.8 3.6 42 232-273 133-180 (657)
446 PF09547 Spore_IV_A: Stage IV 95.6 0.085 1.8E-06 53.4 9.9 65 279-350 168-237 (492)
447 PF13555 AAA_29: P-loop contai 95.5 0.013 2.8E-07 43.4 2.9 21 178-198 25-45 (62)
448 COG1136 SalX ABC-type antimicr 95.5 0.0079 1.7E-07 56.1 2.1 32 169-200 24-55 (226)
449 PRK00300 gmk guanylate kinase; 95.4 0.012 2.7E-07 53.4 3.3 41 178-218 7-48 (205)
450 COG1134 TagH ABC-type polysacc 95.4 0.009 1.9E-07 56.0 2.3 33 168-200 45-77 (249)
451 COG1116 TauB ABC-type nitrate/ 95.4 0.0085 1.8E-07 56.4 2.2 30 171-200 24-53 (248)
452 COG1126 GlnQ ABC-type polar am 95.4 0.0089 1.9E-07 55.2 2.2 32 169-200 21-52 (240)
453 cd01130 VirB11-like_ATPase Typ 95.4 0.016 3.4E-07 52.3 3.7 33 168-200 17-49 (186)
454 PF05621 TniB: Bacterial TniB 95.4 0.11 2.3E-06 50.5 9.5 109 176-305 61-189 (302)
455 KOG0066 eIF2-interacting prote 95.3 0.11 2.3E-06 52.8 9.5 31 169-199 606-636 (807)
456 PF13671 AAA_33: AAA domain; P 95.3 0.014 3.1E-07 49.4 3.1 21 179-199 2-22 (143)
457 COG4559 ABC-type hemin transpo 95.3 0.011 2.5E-07 54.4 2.4 31 170-200 21-51 (259)
458 PRK08118 topology modulation p 95.3 0.014 3E-07 51.9 2.9 23 177-199 2-24 (167)
459 PF13521 AAA_28: AAA domain; P 95.3 0.013 2.8E-07 51.4 2.7 22 178-199 1-22 (163)
460 PRK07261 topology modulation p 95.2 0.014 3.1E-07 51.9 3.0 23 177-199 1-23 (171)
461 cd03264 ABC_drug_resistance_li 95.2 0.0092 2E-07 54.6 1.8 30 170-200 20-49 (211)
462 COG1161 Predicted GTPases [Gen 95.2 0.056 1.2E-06 53.2 7.3 95 233-342 12-109 (322)
463 cd02019 NK Nucleoside/nucleoti 95.2 0.017 3.7E-07 43.4 2.7 21 179-199 2-22 (69)
464 TIGR00960 3a0501s02 Type II (G 95.2 0.011 2.3E-07 54.3 1.9 31 170-200 23-53 (216)
465 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.1 0.011 2.4E-07 54.4 1.9 30 171-200 25-54 (218)
466 cd03261 ABC_Org_Solvent_Resist 95.1 0.011 2.3E-07 55.2 1.9 31 170-200 20-50 (235)
467 cd03226 ABC_cobalt_CbiO_domain 95.1 0.011 2.4E-07 53.8 2.0 30 171-200 21-50 (205)
468 COG3840 ThiQ ABC-type thiamine 95.1 0.016 3.5E-07 52.3 2.8 23 178-200 27-49 (231)
469 TIGR03608 L_ocin_972_ABC putat 95.1 0.011 2.5E-07 53.6 1.9 31 170-200 18-48 (206)
470 cd03225 ABC_cobalt_CbiO_domain 95.1 0.012 2.5E-07 53.9 1.9 30 171-200 22-51 (211)
471 COG0563 Adk Adenylate kinase a 95.1 0.017 3.6E-07 52.0 2.9 23 177-199 1-23 (178)
472 cd03265 ABC_DrrA DrrA is the A 95.0 0.013 2.8E-07 54.1 2.1 31 170-200 20-50 (220)
473 TIGR01166 cbiO cobalt transpor 95.0 0.012 2.7E-07 52.8 1.9 29 172-200 14-42 (190)
474 TIGR02673 FtsE cell division A 95.0 0.013 2.8E-07 53.7 2.1 31 170-200 22-52 (214)
475 cd03238 ABC_UvrA The excision 95.0 0.012 2.7E-07 52.8 1.8 28 171-198 16-43 (176)
476 cd03218 ABC_YhbG The ABC trans 95.0 0.014 3E-07 54.2 2.2 31 170-200 20-50 (232)
477 cd03259 ABC_Carb_Solutes_like 95.0 0.013 2.9E-07 53.6 2.1 31 170-200 20-50 (213)
478 cd03257 ABC_NikE_OppD_transpor 95.0 0.014 2.9E-07 54.0 2.1 31 170-200 25-55 (228)
479 cd03216 ABC_Carb_Monos_I This 95.0 0.015 3.3E-07 51.2 2.4 32 169-200 19-50 (163)
480 cd03224 ABC_TM1139_LivF_branch 95.0 0.013 2.8E-07 54.0 1.9 31 170-200 20-50 (222)
481 cd03269 ABC_putative_ATPase Th 95.0 0.013 2.9E-07 53.5 1.9 31 170-200 20-50 (210)
482 cd03229 ABC_Class3 This class 95.0 0.014 2.9E-07 52.2 1.9 32 169-200 19-50 (178)
483 KOG2749 mRNA cleavage and poly 94.9 0.13 2.8E-06 50.8 8.6 27 174-200 101-127 (415)
484 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.013 2.8E-07 50.6 1.7 30 171-200 21-50 (144)
485 TIGR02211 LolD_lipo_ex lipopro 94.9 0.014 3E-07 53.8 2.0 30 171-200 26-55 (221)
486 cd03301 ABC_MalK_N The N-termi 94.9 0.014 3E-07 53.4 2.0 31 170-200 20-50 (213)
487 TIGR01978 sufC FeS assembly AT 94.9 0.015 3.3E-07 54.2 2.2 31 169-199 19-49 (243)
488 cd03235 ABC_Metallic_Cations A 94.9 0.014 3.1E-07 53.4 2.0 32 169-200 18-49 (213)
489 cd03262 ABC_HisP_GlnQ_permease 94.9 0.015 3.2E-07 53.2 2.1 30 171-200 21-50 (213)
490 cd03293 ABC_NrtD_SsuB_transpor 94.9 0.014 3E-07 53.9 1.9 31 170-200 24-54 (220)
491 cd03222 ABC_RNaseL_inhibitor T 94.9 0.016 3.5E-07 52.0 2.3 29 172-200 21-49 (177)
492 cd03263 ABC_subfamily_A The AB 94.9 0.014 3.1E-07 53.6 1.9 30 171-200 23-52 (220)
493 cd03219 ABC_Mj1267_LivG_branch 94.9 0.015 3.2E-07 54.2 2.0 31 170-200 20-50 (236)
494 PF13238 AAA_18: AAA domain; P 94.9 0.024 5.2E-07 46.8 3.1 21 179-199 1-21 (129)
495 TIGR02315 ABC_phnC phosphonate 94.8 0.016 3.4E-07 54.3 2.1 31 170-200 22-52 (243)
496 cd03292 ABC_FtsE_transporter F 94.8 0.015 3.2E-07 53.3 1.9 30 171-200 22-51 (214)
497 PRK13541 cytochrome c biogenes 94.8 0.017 3.7E-07 52.3 2.3 31 170-200 20-50 (195)
498 TIGR01189 ccmA heme ABC export 94.8 0.016 3.4E-07 52.6 2.0 32 169-200 19-50 (198)
499 cd03266 ABC_NatA_sodium_export 94.8 0.015 3.2E-07 53.4 1.9 30 171-200 26-55 (218)
500 cd03260 ABC_PstB_phosphate_tra 94.8 0.015 3.2E-07 53.9 1.8 30 171-200 21-50 (227)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1e-83 Score=611.18 Aligned_cols=310 Identities=44% Similarity=0.711 Sum_probs=286.0
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
.++||||| ||+||+| ||||| |||+||||||++|++++||++|+|+++|+|+||+||. +++|+
T Consensus 10 ~v~aG~GGnG~VSFrREK~vp~GGPdGG----dGG~GGsV~~~ad~~l~TL~d~r~~~~f~A~~G~~G~------~~~~~ 79 (369)
T COG0536 10 EVKAGDGGNGCVSFRREKFVPKGGPDGG----DGGRGGSVIFEADENLNTLIDFRYKKHFKAENGENGM------GRNRT 79 (369)
T ss_pred EEEecCCCCeeEEEEhhhcCccCCCCCC----CCCCCceEEEEEcCCcccHhhhccceEEEccCCCCCC------CCCCC
Confidence 58999999 9999998 89999 9999999999999999999999999999999999986 68999
Q ss_pred CCCCCCEEEecCCCcEEEcc-CCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~~-~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|+|+ ++++|+||++++|++++|+||+||+||++|+++ + +++|++++.|++
T Consensus 80 G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~---------~----nrAP~~a~~G~~ 146 (369)
T COG0536 80 GAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSS---------V----NRAPRFATPGEP 146 (369)
T ss_pred CCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCc---------c----cCCcccCCCCCC
Confidence 99999999999999999996 589999999999999999999999999988653 2 368999999999
Q ss_pred ccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 164 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 164 ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
||++.++||||++++|+|||+|||||||||++++.++|+|++|||||+.|++|++.... ..+|+++|+||+|+
T Consensus 147 Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-------~~sfv~ADIPGLIE 219 (369)
T COG0536 147 GEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-------GESFVVADIPGLIE 219 (369)
T ss_pred CceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-------CCcEEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999999998643 24799999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCC---CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE 320 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~ 320 (384)
+|+++.||+..||+||+||.+++||||++.. ++.++++.+..||..|++.+.++|.+||+||+|++..+|.++.+.+
T Consensus 220 GAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~ 299 (369)
T COG0536 220 GASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKK 299 (369)
T ss_pred ccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999874 4699999999999999999999999999999998877888888888
Q ss_pred HHHhcCCcc----cccccccCHHHHHHHHHhccCcc
Q 016700 321 EILKIGCDK----VTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 321 ~~~~~~~~~----~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
.+.+..-.. +|+.+..++++++..+.+.+...
T Consensus 300 ~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 300 ALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 877542222 88999999999998888766543
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4.3e-74 Score=563.26 Aligned_cols=308 Identities=41% Similarity=0.677 Sum_probs=277.1
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
++++|+|| ||++|+| ||||| +||+||||||++|++++||++|+++++|+|++|+||+ +++++
T Consensus 9 ~~~~g~gg~g~~~f~r~~~~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~------~~~~~ 78 (335)
T PRK12299 9 YVKAGDGGNGCVSFRREKFIPFGGPDGG----DGGRGGSVILEADENLNTLIDFRYKRHFKAENGENGM------GRNRT 78 (335)
T ss_pred EEEecCCCCceeeEehhhcccCCCCCCC----CCCCCCEEEEEECCCcChhhhhcCccEEECCCCCCCC------CCCCC
Confidence 58999999 9999987 69999 9999999999999999999999999999999999986 57899
Q ss_pred CCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|+| +++++|+||++++|+++||+||+||+||++|+++ + +++|++++.|++
T Consensus 79 g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~---------~----~~~p~~~~~g~~ 145 (335)
T PRK12299 79 GKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSS---------T----NRAPRYATPGEP 145 (335)
T ss_pred CCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccc---------c----CCCCccccCCCC
Confidence 9999999999999999998 5789999999999999999999999999988653 2 357999999999
Q ss_pred ccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 164 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 164 ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
||+++++||||++++|+|||+||||||||||+|+++++.+++|||||+.|+++.+.+.. ..+++||||||+++
T Consensus 146 g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-------~~~~~i~D~PGli~ 218 (335)
T PRK12299 146 GEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-------YKSFVIADIPGLIE 218 (335)
T ss_pred CcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-------CcEEEEEeCCCccC
Confidence 99999999999999999999999999999999999999999999999999999987632 13699999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH-HHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEI 322 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~-l~~~~ 322 (384)
++++++++++.|++|+++|+++|||||+++.++++++..|.++|..|.+.+.++|+++|+||+|+....+..+. +...+
T Consensus 219 ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~ 298 (335)
T PRK12299 219 GASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL 298 (335)
T ss_pred CCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999887778999999999999765443322 22223
Q ss_pred Hhc--CCcccccccccCHHHHHHHHHhccC
Q 016700 323 LKI--GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 323 ~~~--~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
... .+.++|+.++.++++++++|.+.+.
T Consensus 299 ~~~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 299 AALGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 333 4568899999999999999987653
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=3.6e-73 Score=570.06 Aligned_cols=309 Identities=44% Similarity=0.726 Sum_probs=279.3
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
+++||+|| ||+||+| ||||| |||+||||||++|++++||++|+++++|+|+||+||+ +++++
T Consensus 9 ~v~aG~GG~G~~sf~rek~~~~ggp~gG----~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~g~------~~~~~ 78 (424)
T PRK12297 9 YVKAGDGGDGMVSFRREKYVPKGGPDGG----DGGKGGSVIFVADEGLRTLLDFRYKRHFKAENGENGM------GKNMH 78 (424)
T ss_pred EEEecCCCCceeeEEhhhcccCCCCCCC----CCCCCCEEEEEECCCcChhhhhcCccEEEcCCCCCCC------CCCCC
Confidence 68999999 9999977 79999 9999999999999999999999999999999999986 57899
Q ss_pred CCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|+| +++++|+||++++|+++|||||+||+||++|.++ + +++|++++.|++
T Consensus 79 G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s---------~----~~~p~~~~~G~~ 145 (424)
T PRK12297 79 GRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATS---------T----NQAPRIAENGEP 145 (424)
T ss_pred CCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCC---------C----CCCCCcCCCCCC
Confidence 9999999999999999998 6899999999999999999999999999988653 2 257899999999
Q ss_pred ccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 164 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 164 ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
||+++++||||++++|+|||+||||||||||+|+++++++++|||||+.|+++.+.+.. ...++||||||+++
T Consensus 146 ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-------~~~~~laD~PGlie 218 (424)
T PRK12297 146 GEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-------GRSFVMADIPGLIE 218 (424)
T ss_pred CeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-------CceEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999999987642 13799999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCC---CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE 320 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~ 320 (384)
+++++.++++.|++|+++|+++|||+|+++. ++.+++..|.++|..|.+.+..+|++||+||+|+....+.++.+.+
T Consensus 219 ga~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~ 298 (424)
T PRK12297 219 GASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE 298 (424)
T ss_pred cccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH
Confidence 9999999999999999999999999999864 7888899999999999887788999999999998655454555554
Q ss_pred HHHhcCCcccccccccCHHHHHHHHHhccCcc
Q 016700 321 EILKIGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 321 ~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
.+. ..+.++|+.++.|+++++++|.+.+...
T Consensus 299 ~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 299 KLG-PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred HhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 443 4466889999999999999998876543
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.5e-72 Score=572.16 Aligned_cols=311 Identities=41% Similarity=0.639 Sum_probs=280.8
Q ss_pred cCCeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccC
Q 016700 11 HGKLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQL 82 (384)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~ 82 (384)
.=.+++|+|| ||+||+| ||||| |||+||||||++|++++||++|++++||+|+||+||+ +++
T Consensus 9 ~i~v~aG~GG~G~~sf~rek~~~~ggpdGG----~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~G~------~~~ 78 (500)
T PRK12296 9 VLHVKAGDGGNGCASVHREKFKPLGGPDGG----NGGRGGSVVLVVDPQVTTLLDFHFRPHRKATNGKPGM------GDN 78 (500)
T ss_pred EEEEEecCCCCcceeeehhhcccCCCCCCC----CCCCCCEEEEEECCCcCchHHhccCceEECCCCCCCC------CCC
Confidence 3468999999 9999977 79999 9999999999999999999999999999999999986 578
Q ss_pred CCCCCCCCEEEecCCCcEEEccCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCc
Q 016700 83 RGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQ 162 (384)
Q Consensus 83 ~~g~~g~d~~i~vP~gt~v~~~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (384)
++|++|+|++|+||+||+|++++|++|+||++++|+++||+||+||+||++|+++. +++|++++.|+
T Consensus 79 ~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~-------------~~~p~~~~~G~ 145 (500)
T PRK12296 79 RDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKA-------------RKAPGFALLGE 145 (500)
T ss_pred CCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCcc-------------CCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999887643 25799999999
Q ss_pred cccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCc
Q 016700 163 HGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 242 (384)
Q Consensus 163 ~ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~ 242 (384)
+||+++|.||||.+++|+|||+||||||||||+|++++++|++|||||+.|+++++..... +|+||||||++
T Consensus 146 ~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--------~f~laDtPGli 217 (500)
T PRK12296 146 PGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--------RFTVADVPGLI 217 (500)
T ss_pred CCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--------EEEEEECCCCc
Confidence 9999999999999999999999999999999999999999999999999999999976542 79999999999
Q ss_pred cccccccchhHHHHHHcccCCeEEEEeeCCC----CCCHhHHHHHHHHHHhcCC---------CCCCCCEEEEEeCCCCC
Q 016700 243 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLP 309 (384)
Q Consensus 243 ~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~----~~~~~~~~~l~~eL~~~~~---------~l~~~p~ivV~NK~Dl~ 309 (384)
+++++.++++..|++|+++||++|||||+++ .++.+++..+.++|..|.+ .+..+|+|||+||+|++
T Consensus 218 egas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 218 PGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred cccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 9999999999999999999999999999985 4577888889999998875 45679999999999998
Q ss_pred ChHHHHHHHHHHHHhc--CCcccccccccCHHHHHHHHHhccCcc
Q 016700 310 EARDRLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 310 ~~~e~~~~l~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
...+..+.+.+.+... .+.++|+.++.|+++++.+|.+.+...
T Consensus 298 da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 298 DARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred hhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 7655555555555554 356889999999999999998876543
No 5
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=8.9e-72 Score=546.27 Aligned_cols=306 Identities=43% Similarity=0.709 Sum_probs=275.3
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
++++|+|| ||++|+| ||||| +||+||||||++|++++||++|+++++|+|++|+||+ +++++
T Consensus 8 ~~~~g~gg~g~~~f~r~~~~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~------~~~~~ 77 (329)
T TIGR02729 8 FVKAGDGGNGCVSFRREKYVPKGGPDGG----DGGRGGSVILEADENLNTLLDFRYQRHFKAENGENGM------GKNRT 77 (329)
T ss_pred EEEecCCCCceeeEEeeccccCCCCCCC----CCCCCCEEEEEECCCcChhhhccCCcEEEcCCCCCCC------CCCCC
Confidence 68999999 9999977 79999 9999999999999999999999999999999999986 67899
Q ss_pred CCCCCCEEEecCCCcEEEcc-CCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~~-~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|++. ++++|+||++++|+++|||||+||+||++|+++ + +++|++++.|++
T Consensus 78 g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~---------~----~~~p~~~~~g~~ 144 (329)
T TIGR02729 78 GKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSS---------T----NRAPRFATPGEP 144 (329)
T ss_pred CCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCc---------c----CCCCcccCCCCC
Confidence 99999999999999999985 789999999999999999999999999988653 2 357899999999
Q ss_pred ccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 164 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 164 ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
||++.++||||++++|+|||+|||||||||++|+++++.+++|||||+.|+++.+.+.. ..+++||||||+++
T Consensus 145 g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-------~~~~~i~D~PGli~ 217 (329)
T TIGR02729 145 GEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-------GRSFVIADIPGLIE 217 (329)
T ss_pred CcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-------ceEEEEEeCCCccc
Confidence 99999999999999999999999999999999999999999999999999999987653 13799999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCC---CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE 320 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~ 320 (384)
++++.++++..|++|+++|+++|||+|+++. ++++++..|.++|..|.+.+.++|+++|+||+|+....+ .+++.+
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~ 296 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLK 296 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHH
Confidence 9999899999999999999999999999976 788899999999999987777899999999999986543 344444
Q ss_pred HHH-hc--CCcccccccccCHHHHHHHHHhcc
Q 016700 321 EIL-KI--GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 321 ~~~-~~--~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+. .+ .+.++|+.++.++++++++|.+.+
T Consensus 297 ~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 297 ELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 433 22 456789999999999999988654
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4.7e-71 Score=551.61 Aligned_cols=312 Identities=38% Similarity=0.609 Sum_probs=277.2
Q ss_pred CCeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCC
Q 016700 12 GKLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLR 83 (384)
Q Consensus 12 ~~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~ 83 (384)
=++++|+|| ||+||+| ||||| +||+||||||+++++++||++|+++++|+|++|+||+ ++++
T Consensus 9 i~~~~G~GG~g~~~f~r~~~~~~ggp~gg----~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~------~~~~ 78 (390)
T PRK12298 9 IRVVAGDGGNGCVSFRREKYIPKGGPDGG----DGGDGGDVYLEADENLNTLIDYRFERHFRAERGQNGQ------GRDC 78 (390)
T ss_pred EEEEecCCCCceeeEehhhcccCCCCCCC----CCCCCCEEEEEECCCcChhhhhcCCceEEcCCCCCCC------CCCC
Confidence 368999999 9999977 79999 9999999999999999999999999999999999986 5789
Q ss_pred CCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCc
Q 016700 84 GGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQ 162 (384)
Q Consensus 84 ~g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (384)
+|++|+|++|+||+||+|++ +++++|+||++++|+++|||||+||+||++|.++ + +++|++++.|+
T Consensus 79 ~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~---------~----~~~p~~~~~g~ 145 (390)
T PRK12298 79 TGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSS---------V----NRAPRQKTPGT 145 (390)
T ss_pred CCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccC---------c----cCCCcccCCCC
Confidence 99999999999999999997 6789999999999999999999999999887543 2 25789999999
Q ss_pred cccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCc
Q 016700 163 HGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 242 (384)
Q Consensus 163 ~ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~ 242 (384)
+||+++++||||++++|+|||+||||||||||+|+++++.+++|||||+.|+++++..... ..++|+||||++
T Consensus 146 ~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-------~~i~~vDtPGi~ 218 (390)
T PRK12298 146 PGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-------RSFVVADIPGLI 218 (390)
T ss_pred CCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-------cEEEEEeCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999876431 259999999999
Q ss_pred cccccccchhHHHHHHcccCCeEEEEeeCC---CCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHH
Q 016700 243 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT 319 (384)
Q Consensus 243 ~~a~~~~gl~~~fl~~i~~ad~il~VvD~s---~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~ 319 (384)
+.++.+.+++..|++|+++||++|||+|++ ..++.+++..+.+++..|.+.+..+|+++|+||+|+....+..+.+.
T Consensus 219 ~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~ 298 (390)
T PRK12298 219 EGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAK 298 (390)
T ss_pred ccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHH
Confidence 999988899999999999999999999998 45678888899999999887777899999999999986544333333
Q ss_pred HHHHhc----CCcccccccccCHHHHHHHHHhccCccc
Q 016700 320 EEILKI----GCDKVTSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 320 ~~~~~~----~~~~~sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
+..+.. .+..+|+.++.+++++++.|.+.+.+..
T Consensus 299 ~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 299 AIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 333332 3457899999999999999988775543
No 7
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=3.3e-69 Score=506.31 Aligned_cols=309 Identities=41% Similarity=0.620 Sum_probs=277.5
Q ss_pred ccccccCCeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEec-CCcCchhhccccceEEeecCCCCCCCC
Q 016700 6 AVAKSHGKLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYAD-EGKDTLLEFHNKRRYNAKRGGNVDSMG 76 (384)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~-~~~~~l~~~~~~~~~~a~~G~~g~~~~ 76 (384)
-+-+..-++++|+|| ||++|++ +|||| +||+||+|||++. ...++|. +..+.++|++|++|+
T Consensus 41 fiD~~rv~~kgG~GG~G~ssf~~~~~~~~g~PdGG----dGG~GG~V~~~a~~~~~~~l~--~~~s~~~a~~Ge~~~--- 111 (366)
T KOG1489|consen 41 FIDKRRVRIKGGSGGSGASSFFRGYRRPRGGPDGG----DGGNGGHVYFVAKPGAFKQLS--HVGSLIQAPNGENGK--- 111 (366)
T ss_pred hheeeeEEeeccCCCCccchhhhhcccccCCCCCC----CCCCCceEEEEeCcccccccc--cCCceEEccCCCcCc---
Confidence 344445578999999 9999966 46887 8999999999999 6777777 347899999999986
Q ss_pred cCCccCCCCCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchh
Q 016700 77 VLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 155 (384)
Q Consensus 77 ~~~~~~~~g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~ 155 (384)
+.+|+|.+|++.+|+||+||+|+| +.+.+++||+++++++++||||.||+||.+|.+ | .+..|
T Consensus 112 ---s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls-----------~--~~r~p 175 (366)
T KOG1489|consen 112 ---SKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARGGEGGKGNKFFLS-----------N--ENRSP 175 (366)
T ss_pred ---cccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEeecCCCCccceeecc-----------c--cccCc
Confidence 689999999999999999999998 789999999999999999999999999987643 2 23468
Q ss_pred hhhccCccccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEE
Q 016700 156 KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 156 ~~~~~g~~ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
++++.|..|+++.++||||.+++|+|||+|||||||||++|+.++|+|++|+|||+.|++|++.+++. .++++
T Consensus 176 ~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-------~q~tV 248 (366)
T KOG1489|consen 176 KFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-------SQITV 248 (366)
T ss_pred ccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-------ceeEe
Confidence 89999999999999999999999999999999999999999999999999999999999999988763 25999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCC---CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 312 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~ 312 (384)
+|+||+|++||+++|++..||+|+|||+.++||+|++.. .++++++.|+.||+.|...+.++|.++|+||+|+++++
T Consensus 249 ADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae 328 (366)
T KOG1489|consen 249 ADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE 328 (366)
T ss_pred ccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999999997554
Q ss_pred HH-HHHHHHHHHhcCCcccccccccCHHHHHHHHH
Q 016700 313 DR-LQSLTEEILKIGCDKVTSETELSSEDAVKSLS 346 (384)
Q Consensus 313 e~-~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~l~ 346 (384)
+. ++++.+.++.-.+.+++|.+++++++++..|-
T Consensus 329 ~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 329 KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence 43 46666666655588999999999999998764
No 8
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=1e-39 Score=285.33 Aligned_cols=140 Identities=41% Similarity=0.632 Sum_probs=72.8
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
++++|+|| ||+||+| +|||| +||+||||||++|++++||++++++++|+|++|++|+ +++++
T Consensus 8 ~v~~G~GG~G~~sf~r~~~~~~ggp~GG----~GG~GG~V~l~~~~~~~sL~~~~~~~~~~A~~G~~G~------~~~~~ 77 (156)
T PF01018_consen 8 KVRGGNGGNGCVSFRREKYVPKGGPDGG----NGGNGGDVYLVADENVNSLLDLKNKKHYKAENGENGK------SRNCH 77 (156)
T ss_dssp EEE----------EEEETTCCEEEE--------------EEEEE-TT--SSCCCGTSSEEE-------B------TTTB-
T ss_pred EEEecCCcCCEEeEEeeccccCCCCCCC----CCCCCceeEEEecccccchhhcceeeeEEcCCCCCCC------CCccc
Confidence 58999999 9999977 68999 9999999999999999999999999999999999985 67899
Q ss_pred CCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|++ +++++|+||++++++++|||||+||+||++|.++ ..++|++++.|++
T Consensus 78 G~~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~-------------~~~~P~~~~~G~~ 144 (156)
T PF01018_consen 78 GKNGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSS-------------TNRAPRFATPGEP 144 (156)
T ss_dssp ------EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BT-------------TCSS--EEE----
T ss_pred ccCCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCC-------------CCCCCCccCCCCC
Confidence 9999999999999999998 7899999999999999999999999999887653 2357899999999
Q ss_pred ccchhhhHHhhh
Q 016700 164 GEEVSLELILRV 175 (384)
Q Consensus 164 ge~~~~~l~lk~ 175 (384)
||+++|+||||+
T Consensus 145 Ge~~~l~LELK~ 156 (156)
T PF01018_consen 145 GEERKLELELKT 156 (156)
T ss_dssp --EEEEEEEEE-
T ss_pred ceEEEEEEEEeC
Confidence 999999999974
No 9
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.1e-24 Score=192.02 Aligned_cols=165 Identities=54% Similarity=0.868 Sum_probs=133.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
++|+|+|.+|||||||+|+|++.++.++.++++|.++..+.+..... ..+.+|||||+.+.......+...|+
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-------~~~~l~DtpG~~~~~~~~~~~~~~~~ 73 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-------RSFVVADIPGLIEGASEGKGLGHRFL 73 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-------CeEEEEecCcccCcccccCCchHHHH
Confidence 57999999999999999999998877788899999999888765431 27899999999765444456778888
Q ss_pred HHcccCCeEEEEeeCCCC-CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~---~~~~~~sa 332 (384)
++++.||++++|+|+++. ++.+.+..|.+++..+.+.+..+|+++|+||+|+....+..+.+...+.. ..+.++++
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence 889999999999999998 78888888888888776555579999999999997654443434444443 23568899
Q ss_pred ccccCHHHHHHHHHhc
Q 016700 333 ETELSSEDAVKSLSTE 348 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~ 348 (384)
+++.+++++++++++.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998754
No 10
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=2.9e-22 Score=177.12 Aligned_cols=161 Identities=43% Similarity=0.757 Sum_probs=123.2
Q ss_pred EEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcc
Q 016700 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 260 (384)
Q Consensus 181 lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~ 260 (384)
|+|.+|||||||+|+|++.+..+++++++|.+++.+.+.... ...+.+|||||+.+.....+.+...|..++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence 589999999999999999887778899999999988776541 1378999999997655555666667888899
Q ss_pred cCCeEEEEeeCCCC------CCHhHHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCChHHHHHHH-HHHH--HhcC
Q 016700 261 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEARDRLQSL-TEEI--LKIG 326 (384)
Q Consensus 261 ~ad~il~VvD~s~~------~~~~~~~~l~~eL~~~~~~-----l~~~p~ivV~NK~Dl~~~~e~~~~l-~~~~--~~~~ 326 (384)
.+|++++|+|+++. .+.++...+..++..+... +..+|+++|+||+|+....+..+.. .... ....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 99999999999987 4667777777777755432 2469999999999997654433221 1111 1234
Q ss_pred CcccccccccCHHHHHHHHHhc
Q 016700 327 CDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+..+++.++.++++++++++..
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 5688999999999999998753
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.88 E-value=5.4e-22 Score=193.54 Aligned_cols=175 Identities=37% Similarity=0.562 Sum_probs=131.1
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCc----------------cccCCceEEEeCCCCc
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGA----------------EKYSSEATLADLPGLI 242 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~----------------~~~~~~i~i~DtPG~~ 242 (384)
|+|+|.||||||||+|+|++....+++|||||++|+.|.......... ......+.+|||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 689999999999999999999988899999999999987764210000 0011358999999999
Q ss_pred cccccccchhHHHHHHcccCCeEEEEeeCCC-------------CCCHhHHHHHHHHHHhcC------------------
Q 016700 243 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMYN------------------ 291 (384)
Q Consensus 243 ~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~-------------~~~~~~~~~l~~eL~~~~------------------ 291 (384)
++++++++++..|+.+++.||++++|+|++. .++.+++..+..||..+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999974 245666666655554420
Q ss_pred -------------------------------C------------------CCCCCCEEEEEeCCCCCChHHHHHHHHHHH
Q 016700 292 -------------------------------P------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 322 (384)
Q Consensus 292 -------------------------------~------------------~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~ 322 (384)
+ .+..+|+|+|+||+|+....+..+.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~ 240 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLKY 240 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhhC
Confidence 0 023589999999999875554444333222
Q ss_pred HhcCCcccccccccCHHHHHH-HHHhccCccc
Q 016700 323 LKIGCDKVTSETELSSEDAVK-SLSTEGGEAD 353 (384)
Q Consensus 323 ~~~~~~~~sa~t~~gv~e~l~-~l~~~~~~~~ 353 (384)
....+..+|+..+.+++++.+ .+.+.+.+..
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 122355789999999999998 5888876544
No 12
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=4.5e-22 Score=189.56 Aligned_cols=159 Identities=26% Similarity=0.508 Sum_probs=120.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc-chhH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGR 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~-gl~~ 253 (384)
..+.|++.|+||||||||+++|++++|.|++|||||...++|++..... +++++||||+.+.+-+.+ .+..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~--------R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL--------RIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc--------eEEEecCCcccCCChHHhcHHHH
Confidence 3457999999999999999999999999999999999999999987643 899999999988654321 1222
Q ss_pred ---HHHHHcccCCeEEEEeeCCC--CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCc
Q 016700 254 ---NFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 328 (384)
Q Consensus 254 ---~fl~~i~~ad~il~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~ 328 (384)
..++|+ .++|||++|.|. .-+.+....|+++++.. .+.|+++|+||+|+... +.++++...+...+..
T Consensus 239 qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~----f~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~~~~ 311 (346)
T COG1084 239 QAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL----FKAPIVVVINKIDIADE-EKLEEIEASVLEEGGE 311 (346)
T ss_pred HHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh----cCCCeEEEEecccccch-hHHHHHHHHHHhhccc
Confidence 235666 578999999986 45667777788888753 35899999999998863 4456666555555444
Q ss_pred ---ccccccccCHHHHHHHHHhc
Q 016700 329 ---KVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 329 ---~~sa~t~~gv~e~l~~l~~~ 348 (384)
..++..+.+.+.....+...
T Consensus 312 ~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 312 EPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cccceeeeehhhHHHHHHHHHHH
Confidence 56666777777766665544
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=2.4e-21 Score=185.38 Aligned_cols=162 Identities=22% Similarity=0.210 Sum_probs=120.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc-ccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~-~~gl~~~f 255 (384)
+|+|+|.||||||||+|+|++.+..+ +++|.||.....+...... .++++|||||+.+..+. .+.+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--------~qii~vDTPG~~~~~~~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--------SQIIFIDTPGFHEKKHSLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--------cEEEEEECcCCCCCcchHHHHHHHHH
Confidence 58999999999999999999988654 8899999987777654332 26899999999764221 22234455
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc---CCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~---~~~~~sa 332 (384)
..+++.||+++||+|+++....+ ..+...+.. .++|+++|+||+|+....+..+.+....... .+.++||
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEec
Confidence 67789999999999999865543 445555544 3589999999999975444333333333322 3467899
Q ss_pred ccccCHHHHHHHHHhccCcccc
Q 016700 333 ETELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~~~~ 354 (384)
.++.|++++++.|.+.+.....
T Consensus 147 ~~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999998866544
No 14
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=185.79 Aligned_cols=162 Identities=37% Similarity=0.591 Sum_probs=130.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
+.|+|||+|++||||||++|++.++.+++|+|||+.|.-|.+.+.+. +++|+|+||++++++.+++.+..++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga--------~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA--------QIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc--------eEEEEcCcccccCcccCCCCcceee
Confidence 67999999999999999999999999999999999999999998764 8999999999999999999999999
Q ss_pred HHcccCCeEEEEeeCCCCCC----------------------------------------H--hHHHHHHHHHHhcC---
Q 016700 257 RHLRRTRLLVHVIDAAAENP----------------------------------------V--NDYRTVKEELRMYN--- 291 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~----------------------------------------~--~~~~~l~~eL~~~~--- 291 (384)
..++.||++++|+|+..... . -+...+...|.+|.
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 99999999999999974211 0 11122333333332
Q ss_pred -------------------CCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcccccccccCHHHHHHHHHhccC
Q 016700 292 -------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 292 -------------------~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
....-+|.++|+||+|+.. .+.++.+.+.. ...++|++.+.+++++.+.|-+.+.
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 1122489999999999998 44455555443 6778889999999999999888764
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.87 E-value=3.3e-22 Score=175.44 Aligned_cols=151 Identities=28% Similarity=0.427 Sum_probs=107.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~~ 254 (384)
.+|+|+|.||||||||+|+|++.+..+++||++|.++..|.+.+.+ ..+.++|+||+..-... .+.+...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--------~~~~lvDlPG~ysl~~~s~ee~v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--------QQVELVDLPGIYSLSSKSEEERVARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--------EEEEEEE----SSSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--------ceEEEEECCCcccCCCCCcHHHHHHH
Confidence 3799999999999999999999998899999999999999998654 37999999998653222 2333333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~~~~~~s 331 (384)
++. .+..|++++|+|++.. ..++ .+..++.. .++|+++|+||+|+..... ..+.+.+.+ ...+.+++
T Consensus 73 ~l~-~~~~D~ii~VvDa~~l--~r~l-~l~~ql~e-----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~s 142 (156)
T PF02421_consen 73 YLL-SEKPDLIIVVVDATNL--ERNL-YLTLQLLE-----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVS 142 (156)
T ss_dssp HHH-HTSSSEEEEEEEGGGH--HHHH-HHHHHHHH-----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEB
T ss_pred HHh-hcCCCEEEEECCCCCH--HHHH-HHHHHHHH-----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEE
Confidence 333 3679999999999862 2333 34445544 4699999999999864321 234444443 34566889
Q ss_pred cccccCHHHHHHHH
Q 016700 332 SETELSSEDAVKSL 345 (384)
Q Consensus 332 a~t~~gv~e~l~~l 345 (384)
+.++.|++++++.+
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999998764
No 16
>PTZ00258 GTP-binding protein; Provisional
Probab=99.86 E-value=3.7e-21 Score=191.34 Aligned_cols=115 Identities=33% Similarity=0.562 Sum_probs=92.7
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC--------cc-ccCCceEEEeCCCCccc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG--------AE-KYSSEATLADLPGLIEG 244 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~--------~~-~~~~~i~i~DtPG~~~~ 244 (384)
...++|+|||.||||||||+|+|++.++.+++|||||++|+.+.+......- .. ....++.++||||++++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4456899999999999999999999999889999999999999987542100 00 00125899999999999
Q ss_pred cccccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHHH
Q 016700 245 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELR 288 (384)
Q Consensus 245 a~~~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL~ 288 (384)
++.+++++..|+.++++||+++||||+.. .++.++++.+..||.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~ 152 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELI 152 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHH
Confidence 99989999999999999999999999852 355666666555554
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=4.5e-21 Score=189.82 Aligned_cols=161 Identities=32% Similarity=0.389 Sum_probs=119.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc-ccc-ccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-AHL-GKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~-a~~-~~gl~ 252 (384)
..++|+|+|+||||||||+|+|++.+..+.+++|+|+++....+.... +..+.||||||++.. .+. -+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-------~~~i~l~DT~G~~~~l~~~lie~f- 259 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-------GGEVLLTDTVGFIRDLPHELVAAF- 259 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-------CceEEEEecCcccccCCHHHHHHH-
Confidence 558999999999999999999999886668999999999988887632 137999999999543 111 1112
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCccccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa 332 (384)
...+.++..||++|+|+|++++...++...+.+.+.... ..++|+++|+||+|+....+ ...+.. ....+..+|+
T Consensus 260 ~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~-v~~~~~--~~~~~i~iSA 334 (351)
T TIGR03156 260 RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPR-IERLEE--GYPEAVFVSA 334 (351)
T ss_pred HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHh-HHHHHh--CCCCEEEEEc
Confidence 234566889999999999999877777666666665543 13689999999999975432 221111 0123567899
Q ss_pred ccccCHHHHHHHHHhc
Q 016700 333 ETELSSEDAVKSLSTE 348 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~ 348 (384)
.++.|++++++.|.+.
T Consensus 335 ktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 335 KTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 9999999999998753
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=7e-21 Score=179.94 Aligned_cols=164 Identities=26% Similarity=0.329 Sum_probs=130.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~f 255 (384)
-|++||.||||||||+|+|.+++.+| ++.|-||+....|.+..+.. +++++||||+-+..+ .++-+.+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~--------QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNA--------QIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCc--------eEEEEeCCCCCCcchHHHHHHHHHH
Confidence 48999999999999999999999887 99999999999999887643 899999999976533 355566777
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc----CCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~----~~~~~s 331 (384)
...+..+|+++||+|++......+ +.+++.|+. .+.|+++++||+|.......+..+.+.+... .+.++|
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 788999999999999987444333 445556654 3589999999999987666445555554433 345789
Q ss_pred cccccCHHHHHHHHHhccCccccc
Q 016700 332 SETELSSEDAVKSLSTEGGEADLL 355 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~~~~~ 355 (384)
|..+.+++.+++.+.+.+.+....
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999876553
No 19
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.86 E-value=4.9e-21 Score=191.99 Aligned_cols=176 Identities=38% Similarity=0.573 Sum_probs=128.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC----------------ccccCCceEEEeCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------------AEKYSSEATLADLPG 240 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~----------------~~~~~~~i~i~DtPG 240 (384)
.+|+|||+||||||||+|+|++.+..+++|||||++|+.|.+....... .......+.++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4799999999999999999999998889999999999999865321100 000113588999999
Q ss_pred CccccccccchhHHHHHHcccCCeEEEEeeCCC-------------CCCHhHHHHHHHHHHhcC----------------
Q 016700 241 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMYN---------------- 291 (384)
Q Consensus 241 ~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~-------------~~~~~~~~~l~~eL~~~~---------------- 291 (384)
++++++.+++++..|+++++.||++++|+|++. .++.++++.+..||..++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999972 234455554444443320
Q ss_pred ---------------------------------C------------------CCCCCCEEEEEeCCCCCChHHHHHHHHH
Q 016700 292 ---------------------------------P------------------DYLERPFIVVLNKIDLPEARDRLQSLTE 320 (384)
Q Consensus 292 ---------------------------------~------------------~l~~~p~ivV~NK~Dl~~~~e~~~~l~~ 320 (384)
+ -+..+|+|+|+||+|+....+.+..+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~ 241 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKE 241 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHh
Confidence 0 1135999999999998654443444433
Q ss_pred HHHhcCCcccccccccCHHH-HHHHHHhccCccc
Q 016700 321 EILKIGCDKVTSETELSSED-AVKSLSTEGGEAD 353 (384)
Q Consensus 321 ~~~~~~~~~~sa~t~~gv~e-~l~~l~~~~~~~~ 353 (384)
. ....+.++|+..+.++++ +++.+.+.+....
T Consensus 242 ~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 242 E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 3 222345778888999988 6777777665543
No 20
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.1e-21 Score=187.59 Aligned_cols=97 Identities=38% Similarity=0.701 Sum_probs=83.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCcc-----------ccCCceEEEeCCCCccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAE-----------KYSSEATLADLPGLIEG 244 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~-----------~~~~~i~i~DtPG~~~~ 244 (384)
..+++|||.||||||||+|+||.....+++|||||++|+.|.+.... ..-. .....+.|+|++|++.+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 35799999999999999999999998889999999999999886532 1100 01125889999999999
Q ss_pred cccccchhHHHHHHcccCCeEEEEeeCCC
Q 016700 245 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA 273 (384)
Q Consensus 245 a~~~~gl~~~fl~~i~~ad~il~VvD~s~ 273 (384)
||+++||+..||.+|+.+|+|++|||++.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 99999999999999999999999999984
No 21
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=7.2e-21 Score=188.81 Aligned_cols=156 Identities=26% Similarity=0.314 Sum_probs=127.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc--ccccchhH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR 253 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a--~~~~gl~~ 253 (384)
+.|+|||.||||||||+|+|++.+.++ +++|++|.++..+.....+ ..|.++||+|+.+.. ...+.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--------~~f~lIDTgGl~~~~~~~l~~~i~~ 75 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--------REFILIDTGGLDDGDEDELQELIRE 75 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--------ceEEEEECCCCCcCCchHHHHHHHH
Confidence 579999999999999999999999887 9999999999998887654 379999999998654 34556777
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCc---cc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~---~~ 330 (384)
+.+..++.||++|||+|....-+.++.. +.+.|.. .++|+++|+||+|-.. .+....++..+|+. .+
T Consensus 76 Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~I 145 (444)
T COG1160 76 QALIAIEEADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPI 145 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEe
Confidence 7888999999999999998876666643 4445553 3699999999999773 34455567777765 56
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+..+.|+.++++++.+.+.
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ehhhccCHHHHHHHHHhhcC
Confidence 88999999999999998873
No 22
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=1.3e-20 Score=165.91 Aligned_cols=161 Identities=26% Similarity=0.347 Sum_probs=113.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc-chhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~-gl~~~f 255 (384)
++|+++|.+|||||||+++|++....+.+++++|..+..+.+.... .++.||||||+.+.....+ .+....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~~~~~~~~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--------LRWQVIDTPGLLDRPLEERNTIEMQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--------eEEEEEECCCcCCccccCCchHHHHH
Confidence 4799999999999999999999887777889999888887765432 2799999999865322211 111111
Q ss_pred HHH-cccCCeEEEEeeCCCCCC--HhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH--HhcCCccc
Q 016700 256 LRH-LRRTRLLVHVIDAAAENP--VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKV 330 (384)
Q Consensus 256 l~~-i~~ad~il~VvD~s~~~~--~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~--~~~~~~~~ 330 (384)
... ...+|++|+|+|+++... .+....+.+++.... .+.|+++|+||+|+....+..+ ..+.. ....+.++
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 148 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKI 148 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEE
Confidence 111 123689999999987654 244455666665432 3689999999999976543222 22222 22346689
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|++++.|++++++++++.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 149 STLTEEGVDEVKNKACELL 167 (168)
T ss_pred EecccCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 23
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.8e-21 Score=193.62 Aligned_cols=178 Identities=25% Similarity=0.288 Sum_probs=139.6
Q ss_pred ccchhhhhccCccccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCcccc
Q 016700 151 RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKY 229 (384)
Q Consensus 151 ~~~~~~~~~~g~~ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~ 229 (384)
++...++......|+ .|+...+|+|+|.||||||||||+|++.+.+| ++.|+||++.....+...+.
T Consensus 198 ~~~l~~ll~~~~~g~------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~------ 265 (454)
T COG0486 198 IAELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI------ 265 (454)
T ss_pred HHHHHHHHHhhhhhh------hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE------
Confidence 445566677778887 78999999999999999999999999999887 99999999999999887764
Q ss_pred CCceEEEeCCCCccccc--cccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 230 SSEATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~--~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
.+.++||+|+++... +..|+.+.+ +.++.||++|||+|++.+.+.++...+. .+ ..++|+++|.||+|
T Consensus 266 --pv~l~DTAGiRet~d~VE~iGIeRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~------~~~~~~i~v~NK~D 335 (454)
T COG0486 266 --PVRLVDTAGIRETDDVVERIGIERAK-KAIEEADLVLFVLDASQPLDKEDLALIE-LL------PKKKPIIVVLNKAD 335 (454)
T ss_pred --EEEEEecCCcccCccHHHHHHHHHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH-hc------ccCCCEEEEEechh
Confidence 799999999998654 455666664 6789999999999999875555544332 11 14699999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCcccccccccCHHHHHHHHHhccCcc
Q 016700 308 LPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 308 l~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
|..... ...+ +......+...|+.+++|++.+.+.|...+...
T Consensus 336 L~~~~~-~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 336 LVSKIE-LESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cccccc-cchh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 987543 1222 222233467889999999999999888776544
No 24
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=5.2e-21 Score=193.62 Aligned_cols=164 Identities=32% Similarity=0.389 Sum_probs=119.4
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc-cc-cccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-AH-LGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~-a~-~~~gl~ 252 (384)
.++.|+|+|+||||||||+|+|++.+..+.+++|+|+++....+..... ..+++|||||++.. ++ .-+.+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-------~~~~l~DTaG~~r~lp~~lve~f- 267 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-------GETVLADTVGFIRHLPHDLVAAF- 267 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-------CeEEEEecCcccccCCHHHHHHH-
Confidence 4479999999999999999999998877889999999999887765421 26899999999543 11 11112
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC-Ccccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-CDKVT 331 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~-~~~~s 331 (384)
...+.++..||++|+|+|++++...+....+...+..... .+.|+++|+||+|+...... .+........ +..+|
T Consensus 268 ~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~v~IS 343 (426)
T PRK11058 268 KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIRVWLS 343 (426)
T ss_pred HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCchhH--HHHHHhcCCCceEEEe
Confidence 2235667889999999999998777776555555554322 36899999999999753221 1111111122 24689
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.|+++++++|.+.+.
T Consensus 344 AktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999998764
No 25
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=3.1e-20 Score=174.08 Aligned_cols=160 Identities=36% Similarity=0.520 Sum_probs=121.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
++|+|+|+||+|||||+++|++..+.+++|+|+|.++..+.+.+.+ ..+.+|||||+.+.+....++...++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--------~~i~l~DtpG~~~~~~~~~~~~~~~l 72 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--------AKIQLLDLPGIIEGAADGKGRGRQVI 72 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--------eEEEEEECCCcccccccchhHHHHHH
Confidence 5799999999999999999999988889999999999999886653 27899999999887665566777788
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHH--------------------------------------------HhcC-
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL--------------------------------------------RMYN- 291 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL--------------------------------------------~~~~- 291 (384)
..++.+|++++|+|+++... +...+.++| ++|.
T Consensus 73 ~~~~~ad~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i 150 (233)
T cd01896 73 AVARTADLILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKI 150 (233)
T ss_pred HhhccCCEEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCe
Confidence 89999999999999986432 222223333 2221
Q ss_pred ---------------------CCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcccccccccCHHHHHHHHHhccC
Q 016700 292 ---------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 292 ---------------------~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
....-.|+++|+||+|+....+ .+.+ .....+.++|+.++.+++++++.+.+.+.
T Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~~~---~~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 151 HNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LDLL---ARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HHHH---hcCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1112369999999999986543 2222 22345678899999999999999987653
No 26
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.83 E-value=1.1e-19 Score=158.76 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=115.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.+......+.++.+.....+..... ...+.+|||||... +.....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~D~~G~~~-------~~~~~~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK------TVRLQLWDTAGQER-------FRSLIP 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE------EEEEEEEECCCcHH-------HHHHHH
Confidence 37999999999999999999998877666777776666555543321 12589999999743 333455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa~ 333 (384)
.++..+|++++|+|++++.+++....++..+..... .+.|+++|+||+|+....+ ..++....... ..+.++++.
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAK 145 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCC
Confidence 667899999999999998888888888777765332 2689999999999953322 12222222223 345688999
Q ss_pred cccCHHHHHHHHHhc
Q 016700 334 TELSSEDAVKSLSTE 348 (384)
Q Consensus 334 t~~gv~e~l~~l~~~ 348 (384)
++.+++++++++++.
T Consensus 146 ~~~~v~~l~~~i~~~ 160 (161)
T cd01861 146 AGHNVKELFRKIASA 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999864
No 27
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=1.2e-19 Score=179.11 Aligned_cols=164 Identities=23% Similarity=0.247 Sum_probs=118.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~ 254 (384)
.+|+++|.||||||||+|+|.+.+..+ ++.+.||.+...+.+..+. .+++||||||+.+... ....+.+.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--------~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--------TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--------eEEEEEECCCcCCCcccHHHHHHHH
Confidence 489999999999999999999987654 7788899887777776543 2789999999965321 22223344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc----CCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~----~~~~~ 330 (384)
...++..||++|||+|+++..... ...+.+.+..+ +.|.++|+||+|+... ....+.+.+... .+.++
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~-~~~il~~l~~~-----~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDI-THNILDKLRSL-----NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHH-HHHHHHHHHhc-----CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence 455688999999999987532221 13344555432 4688899999998653 234455555433 24688
Q ss_pred ccccccCHHHHHHHHHhccCcccccc
Q 016700 331 TSETELSSEDAVKSLSTEGGEADLLS 356 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~~~~~~ 356 (384)
||.++.|+++++++|.+.+.+.....
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~~~~~ 222 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKISPWLY 222 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999887665543
No 28
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.83 E-value=8.2e-20 Score=179.90 Aligned_cols=96 Identities=39% Similarity=0.687 Sum_probs=82.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCC--------Ccc-ccCCceEEEeCCCCcccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAE-KYSSEATLADLPGLIEGAHL 247 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~--------~~~-~~~~~i~i~DtPG~~~~a~~ 247 (384)
.+|+|||.||||||||+|+|++.++.+++|||||++|+.|.+...... ... .....+.++||||++++++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 579999999999999999999999888999999999999988765410 000 00125899999999999999
Q ss_pred ccchhHHHHHHcccCCeEEEEeeCC
Q 016700 248 GKGLGRNFLRHLRRTRLLVHVIDAA 272 (384)
Q Consensus 248 ~~gl~~~fl~~i~~ad~il~VvD~s 272 (384)
+++++..|+.++++||++++|||+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 9999999999999999999999985
No 29
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.82 E-value=1.7e-19 Score=164.70 Aligned_cols=162 Identities=29% Similarity=0.362 Sum_probs=119.0
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc--cc
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KG 250 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~--~g 250 (384)
.+..++|+|+|.+|||||||+|+|++....+.+++++|.++....+..... ..+++|||||+.+..... ..
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~i~Dt~G~~~~~~~~~~~~ 110 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-------REVLLTDTVGFIRDLPHQLVEA 110 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-------ceEEEeCCCccccCCCHHHHHH
Confidence 345689999999999999999999998766677888999888777764421 268999999996532210 11
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCc
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCD 328 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~ 328 (384)
+. ..+.++..+|++++|+|++++....+...+.+.+..+.. .++|+++|+||+|+....... ..+.. ..+.
T Consensus 111 ~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~~ 183 (204)
T cd01878 111 FR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLDDEELE----ERLEAGRPDAV 183 (204)
T ss_pred HH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCChHHHH----HHhhcCCCceE
Confidence 11 223456789999999999988777776666666665432 358999999999997654322 22222 2456
Q ss_pred ccccccccCHHHHHHHHHhc
Q 016700 329 KVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~ 348 (384)
++|+.++.++++++++|...
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 184 FISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEcCCCCCHHHHHHHHHhh
Confidence 88999999999999998764
No 30
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=161.55 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=125.7
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
+...+.||.|+|..|||||.|+.++......-. ..+|+ +.....+.++.. ..+++||||+|+ +
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~gk------~iKlQIWDTAGQ-------E 69 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDGK------TIKLQIWDTAGQ-------E 69 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecce------EEEEEeeecccc-------H
Confidence 446678999999999999999999987643221 12343 333344444432 237999999998 6
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHhc
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKI 325 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~----~~~l~~~~~~~ 325 (384)
++...+..+++.|+.||+|+|+++..+++.+..|+.|+..|.. .+.|.++|+||+|+.+.... .+++...+...
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc
Confidence 6788899999999999999999999999999999999999875 45899999999999865432 33333332222
Q ss_pred CCcccccccccCHHHHHHHHHhccCcc
Q 016700 326 GCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 326 ~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
.+.++||+...++++.|..|+..+...
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHHHHh
Confidence 267899999999999999999877543
No 31
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2e-19 Score=164.31 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=112.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|..........|....+.....+..... ....+.||||||... +...+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~-----~~~~l~l~Dt~G~~~-------~~~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPN-----TVVRLQLWDIAGQER-------FGGMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCC-----CEEEEEEEECCCchh-------hhhhHH
Confidence 37999999999999999999976432222222222222233332210 012689999999833 344456
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCh-HHHHHHHHHHHHhc---CCccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEA-RDRLQSLTEEILKI---GCDKV 330 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~~p~ivV~NK~Dl~~~-~e~~~~l~~~~~~~---~~~~~ 330 (384)
.+++.+|++|+|+|++++++++....|+.++.... +.....|+++|+||+|+... ....+++.+..... .+.++
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEE
Confidence 67899999999999999988888888888776532 12246899999999999631 11123333333333 46689
Q ss_pred ccccccCHHHHHHHHHhccCcc
Q 016700 331 TSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
|++++.+++++|++|+..+...
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999877543
No 32
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.82 E-value=1.6e-19 Score=158.65 Aligned_cols=158 Identities=20% Similarity=0.122 Sum_probs=113.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+.+......|.++.+.....+..... ...+.+|||||+.. +.....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~D~~g~~~-------~~~~~~ 70 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK------TIKAQIWDTAGQER-------YRAITS 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEeCCChHH-------HHHHHH
Confidence 68999999999999999999987655444454444333333332211 12689999999843 333345
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa~ 333 (384)
.+++.|+++|+|+|+++..+++.+..|+.++....+ .+.|+++|+||+|+....+ ..++..+.... ..+.++|+.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 567889999999999988888888888888776543 3589999999999865321 12222333332 346789999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.+++++++++.+.+
T Consensus 149 ~~~~v~~l~~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988653
No 33
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=6.7e-20 Score=179.52 Aligned_cols=165 Identities=30% Similarity=0.355 Sum_probs=129.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
..++.|+|+|++|||||||+|+|+++.....+..|+|++|....+...+ +..+.+.||-|++.. ....+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~LV~ 260 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPLVE 260 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHHHH
Confidence 3568899999999999999999999988889999999999999987764 237999999999974 2233555
Q ss_pred HHH---HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCccc
Q 016700 254 NFL---RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 330 (384)
Q Consensus 254 ~fl---~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~ 330 (384)
+|. .....||++|+|||+|++...+.++...+.|..... .+.|+|+|+||+|+....+....+.... . ....+
T Consensus 261 AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~-~~v~i 336 (411)
T COG2262 261 AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEILAELERGS-P-NPVFI 336 (411)
T ss_pred HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhhhhhhhhcC-C-CeEEE
Confidence 554 445679999999999999888888877777776542 4599999999999886544222222221 1 35578
Q ss_pred ccccccCHHHHHHHHHhccCc
Q 016700 331 TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~ 351 (384)
|+.++.|++.+.+.|...+..
T Consensus 337 SA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 337 SAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred EeccCcCHHHHHHHHHHHhhh
Confidence 999999999999998887653
No 34
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.82 E-value=3.5e-19 Score=154.84 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=109.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.+.. ..+..|+.+.....+..+.. ...+.+|||||..+ +...+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEE-------YSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCE------EEEEEEEECCCCcc-------hHHHHH
Confidence 47999999999999999999976532 23333332222222222210 12478899999843 344455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~--~~~~~sa~t 334 (384)
.++..++++++|+|+++..+++.+..++..+..+.. ..+.|+++|+||+|+.......++..+..... .+.++|+.+
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT 146 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence 678889999999999988788887777777765532 24689999999999975332233333333333 456889999
Q ss_pred ccCHHHHHHHHHhcc
Q 016700 335 ELSSEDAVKSLSTEG 349 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~ 349 (384)
+.|+++++++|++.+
T Consensus 147 ~~gi~~l~~~l~~~~ 161 (162)
T cd04138 147 RQGVEEAFYTLVREI 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998643
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.82 E-value=2.7e-19 Score=156.36 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=109.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++...... ..++.|+.+.....+..+.. ...+.||||||..+ +...+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQ------QCMLEILDTAGTEQ-------FTAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCE------EEEEEEEECCCccc-------cchHHH
Confidence 48999999999999999999976432 23333333222222322211 12578999999844 333344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
.+++.+|++++|+|++++.+++....|.+++..+.. ..+.|+++|+||+|+...... .+...+..+. ..+.++|+.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAK 146 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCC
Confidence 567889999999999998888888888888876542 246899999999998653221 1112222222 345688999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.+++++++++++.+
T Consensus 147 ~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 147 SKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998654
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=2.4e-19 Score=158.11 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=109.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.+......|..+.+.....+.... ....+.+|||||..+ +...+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~g~~~-------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND------KRVKLQIWDTAGQER-------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCChHH-------HHHHHH
Confidence 5899999999999999999998765332222211111111121111 012689999999843 334456
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa~ 333 (384)
.+++.+|++++|+|+++..+++.+..|..++..+.. ...|+++|+||+|+...... .+...+....+ .+.++|+.
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAK 146 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECC
Confidence 778999999999999998888888888888876543 35899999999999654221 12222222333 46689999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.|+++++++|++.+
T Consensus 147 ~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 147 ENINVKQVFERLVDII 162 (165)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 37
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=2.4e-19 Score=157.79 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=108.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||+++|..........+..+.+.....+.... ....+.||||||... +....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~-------~~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG------KRVKLQIWDTAGQER-------FRTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC------EEEEEEEEECCChHH-------HHHHH
Confidence 46899999999999999999987643221111111222222232221 012689999999743 33344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc---CCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI---GCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~---~~~~~s 331 (384)
..++..+|++++|+|++++.+++....|+.++..+.. .+.|+++|+||+|+...++ ..+...+..+.. .+.++|
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 5567889999999999998888888888888776432 4689999999999975422 122222333333 356899
Q ss_pred cccccCHHHHHHHHHhc
Q 016700 332 SETELSSEDAVKSLSTE 348 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~ 348 (384)
+.++.++++++.+++..
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999864
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=2.3e-19 Score=157.71 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=106.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc----cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i----a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+|+|+|.+|||||||+++|+...... .....+|.....+.+.++. ..+.+|||||+.+ +..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN--------ARLKFWDLGGQES-------LRS 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC--------EEEEEEECCCChh-------hHH
Confidence 48999999999999999998754321 1223445555565555442 2789999999853 344
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---------
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--------- 324 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--------- 324 (384)
.+..+++.+|++++|+|+++.++......++..+... ....+.|+++|+||+|+..... .+++.+.+..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCc
Confidence 5667789999999999998876666555555544332 1234689999999999875421 2223332221
Q ss_pred cCCcccccccccCHHHHHHHHHh
Q 016700 325 IGCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 325 ~~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
..+.++|+.++.|+++++++|++
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 24568899999999999999875
No 39
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=4e-19 Score=162.51 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=111.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc-ccchhHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNFL 256 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~-~~gl~~~fl 256 (384)
+|+|+|.+|||||||++++.+.+......|.++.+.....+..... ...+.||||||+.+.... .........
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~------~~~l~i~Dt~G~~~~~~~~~~e~~~~~~ 75 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR------VYDLHILDVPNMQRYPGTAGQEWMDPRF 75 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE------EEEEEEEeCCCcccCCccchhHHHHHHH
Confidence 7999999999999999999976543333333332222222222210 126889999998543211 011111233
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCcccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~s 331 (384)
.+++.||++|+|+|++++++++....|++++..+.. ...+.|+++|+||+|+...+ +..+.+........+.++|
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEec
Confidence 557899999999999998888888888877765431 12468999999999996532 1122222212234567999
Q ss_pred cccccCHHHHHHHHHhccCc
Q 016700 332 SETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~ 351 (384)
++++.+++++|+.++.....
T Consensus 156 ak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 156 AKYNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999977643
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=3.9e-19 Score=164.26 Aligned_cols=163 Identities=13% Similarity=0.011 Sum_probs=113.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+........|..+.+.....+..+.. ....+.||||||... +...+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-----~~~~~~i~Dt~G~~~-------~~~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-----LNVTLQVWDIGGQSI-------GGKMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCcHH-------HHHHHH
Confidence 37999999999999999999976543233343344444444433221 113689999999743 233344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa 332 (384)
.+++.||++|+|+|++++++++.+..|..++..+... ....|+++|+||+|+...+.. .+...+..... .+.++|+
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSA 148 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSA 148 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 5678999999999999998999888888888876432 234679999999999743211 12222222333 3567899
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.+++++|++|+..+..
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.81 E-value=4.5e-19 Score=155.11 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=109.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+.+......|..+.+.....+.... ....+.+|||||..+. .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN------KEVRVNFFDLSGHPEY-------LEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC------eEEEEEEEECCccHHH-------HHHHH
Confidence 3799999999999999999998764322222222222222222221 1126899999998432 23344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 330 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~---l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~ 330 (384)
.++..+|++|+|+|++++.+++.+..|..++..+... ....|+++|+||+|+....+ ..++....... ..+.++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 5578899999999999988888888888888776532 24689999999999963211 12222223333 345689
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.++++++++|.+.+
T Consensus 148 Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 42
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=3.5e-19 Score=163.48 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=111.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCc-eeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~t-T~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.|+++|.+|||||||++++...... ..|+.| +.+-....+..+.. ...+.||||+|... +...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~------~v~l~iwDtaGqe~-------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGK------KIRLQIWDTAGQER-------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCE------EEEEEEEeCCCchh-------hHHHHH
Confidence 5899999999999999999876432 223222 22222223332211 12689999999843 444556
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH----HHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----QSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~----~~l~~~~~~~~~~~~sa 332 (384)
.+++.||++|+|+|++++++++.+..|+.++..+.. .+.|+++|+||+|+....+.. +.+.+....+.+.++||
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 778999999999999999999999888888876542 468999999999996533322 22222222234668999
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
+++.+++++|++|+..+.
T Consensus 146 ktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 146 KDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998664
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.81 E-value=4.5e-19 Score=156.07 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=111.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||++++.+.+......+..+.+.....+..... ...+.+|||||... +...+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~D~~G~~~-------~~~~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQER-------FRTIT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCcHh-------HHHHH
Confidence 368999999999999999999987654433333332222223322210 12689999999743 33344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa 332 (384)
..+++.+|++|+|+|+++.++++.+..|+.++..+.. .+.|+++|+||+|+...... .++..+.... ..+.++|+
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 5667889999999999998888888888888876642 35899999999998653211 1222222333 34568899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.++++++..|+..+
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999998765
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=4.1e-19 Score=156.88 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=111.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||++++.+.+......|..+.+.....+..... ...+.+|||||... +....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~D~~g~~~-------~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK------KIKLQIWDTAGQER-------FRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE------EEEEEEEeCCchHH-------HHHHH
Confidence 468999999999999999999987543322222222222222222210 12689999999743 33344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa 332 (384)
..+++.||++|+|+|++++++++.+..|+.++..+.. .+.|+++|+||+|+....+ ..+...+.... ..+.++|+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 5678899999999999998888888888888876542 4689999999999975321 12223333333 34578999
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.+++++|+++++.+
T Consensus 148 ~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 148 KANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 45
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=7.2e-19 Score=169.86 Aligned_cols=163 Identities=27% Similarity=0.370 Sum_probs=117.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~f 255 (384)
.|+|+|.||||||||+|+|++.+..+ ++.+.||.....+.+..+. .+++++||||+.+... .++.+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--------~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--------AQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--------ceEEEEECCCCCCchhHHHHHHHHHH
Confidence 49999999999999999999988654 7788888877777665432 2799999999965432 122234445
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-c---CCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-I---GCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-~---~~~~~s 331 (384)
...+..+|++++|+|+++.... ....+.+.+.. .+.|+++|+||+|+....+......+.+.. . .+.++|
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 5678899999999999873332 22334444442 358999999999998443334444444433 2 345789
Q ss_pred cccccCHHHHHHHHHhccCcccc
Q 016700 332 SETELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~~~~ 354 (384)
+.++.+++++++.|.+.+.+...
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999998765443
No 46
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=177.78 Aligned_cols=187 Identities=20% Similarity=0.227 Sum_probs=141.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch--
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-- 251 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl-- 251 (384)
...+|+|+|.||+|||||+|+|++.+..+ ++.++||+++....++++. .++.++||+|+.....-.+++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--------~~~~liDTAGiRrk~ki~e~~E~ 248 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--------RKYVLIDTAGIRRKGKITESVEK 248 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--------eEEEEEECCCCCcccccccceEE
Confidence 45799999999999999999999998776 9999999999888777654 379999999998754332221
Q ss_pred --hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-HHHHHHHH----HHHHh
Q 016700 252 --GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDRLQSLT----EEILK 324 (384)
Q Consensus 252 --~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-~e~~~~l~----~~~~~ 324 (384)
....++.+++|+++++|+|++.+.+.++.+..-...+ ..+++++|+||+|+.+. +..++.+. ..+..
T Consensus 249 ~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~ 322 (444)
T COG1160 249 YSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF 322 (444)
T ss_pred EeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc
Confidence 2345788999999999999999888877665443333 46999999999998764 22333333 33344
Q ss_pred cCC---cccccccccCHHHHHHHHHhccCcccccccccccccccchhhhcCCCc
Q 016700 325 IGC---DKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 375 (384)
Q Consensus 325 ~~~---~~~sa~t~~gv~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~rp 375 (384)
+.+ .++||.++.++.++++.+...............+++..+..+...|+|
T Consensus 323 l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~ 376 (444)
T COG1160 323 LDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPP 376 (444)
T ss_pred ccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCC
Confidence 443 378999999999999999888877777666666666666666666544
No 47
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5.8e-19 Score=179.26 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=118.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh--
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-- 252 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~-- 252 (384)
..+|+++|.||+|||||+|+|++.+.. +.++++||.++....+.... ..+.+|||||+.+.......+.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~e~~ 243 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--------KKYLLIDTAGIRRKGKVTEGVEKY 243 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--------cEEEEEECCCccccccchhhHHHH
Confidence 468999999999999999999987654 48899999988776665443 2689999999976544322222
Q ss_pred --HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh------
Q 016700 253 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------ 324 (384)
Q Consensus 253 --~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~------ 324 (384)
...+++++.||++|+|+|++++.+.++...+ ..+.. .++|+++|+||+|+....+..+.+.+.+..
T Consensus 244 ~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 317 (429)
T TIGR03594 244 SVLRTLKAIERADVVLLVLDATEGITEQDLRIA-GLILE-----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLD 317 (429)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCC
Confidence 2235678999999999999988777665433 33332 358999999999998333334444443332
Q ss_pred -cCCcccccccccCHHHHHHHHHhccCc
Q 016700 325 -IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 325 -~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..+.++||.++.+++++++++.+....
T Consensus 318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 245678999999999999998876543
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.81 E-value=6e-19 Score=156.11 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=113.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||++++.+.+......+..+.+.....+..... ...+.||||||..+ +....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK------QIKLQIWDTAGQES-------FRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCcHH-------HHHHH
Confidence 468999999999999999999987654433333333333333322211 12689999999743 34445
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa 332 (384)
..+++.+|++|+|+|++++.+++++..|+.++..+.. .+.|+++|+||+|+..... ..+........ ..+.++|+
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA 148 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 6678899999999999998888888888888876542 4689999999999874221 12223333333 34568899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
..+.++++++..+++.+
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 49
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=5.9e-19 Score=155.59 Aligned_cols=158 Identities=18% Similarity=0.116 Sum_probs=110.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeec-ceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p-~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+++|.+|||||||++++...+. ...++.|+-.. ..-.+.... ....+.+|||||... +...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~-------~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNG------QKIKLQIWDTAGQER-------FRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECC------EEEEEEEEECCCcHH-------HHHH
Confidence 36899999999999999999997643 23333332111 111122211 012689999999743 3444
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~s 331 (384)
+..+++.+|++|+|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+....+. .++..+..... .+.++|
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 145 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECS 145 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEE
Confidence 56678899999999999998888888888887765432 35899999999999754321 22333333333 456899
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
+.++.|++++|.+++..+
T Consensus 146 a~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 146 AKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 50
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=4.5e-19 Score=182.42 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=127.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch--
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-- 251 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl-- 251 (384)
...+|+|+|.||||||||+|+|++.+.. ++++++||.++....+.... ..+.||||||+........+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--------~~~~l~DTaG~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--------KTWRFVDTAGLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--------EEEEEEECCCccccccccchHHH
Confidence 3579999999999999999999988753 58899999988777665543 268899999986543221111
Q ss_pred hH--HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhc-
Q 016700 252 GR--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI- 325 (384)
Q Consensus 252 ~~--~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~- 325 (384)
-. ....++++||++|+|+|+++..+.++...+ ..+.. .++|+|+|+||+|+..... ..+++.+.+...
T Consensus 282 ~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~-~~~~~-----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 282 YASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL-SMVIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCC
Confidence 11 113457899999999999998887776543 33332 3689999999999975322 112233333322
Q ss_pred --CCcccccccccCHHHHHHHHHhccCcccccccccccccccchhhhcCCCc
Q 016700 326 --GCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 375 (384)
Q Consensus 326 --~~~~~sa~t~~gv~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~rp 375 (384)
.+.++||.++.+++++++.++..+...........++....+-++..|+|
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p 407 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPP 407 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Confidence 34578999999999999999887755444433333333344444444444
No 51
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=3.8e-19 Score=161.14 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=112.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecce-EEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~-g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+|+|.+|||||||+++|...+.....++.|+..... ..+.... ....+.||||||... +...+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG------VKVKLQIWDTAGQER-------FRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC------EEEEEEEEeCCCcHH-------HHHhh
Confidence 379999999999999999999877655444444332221 1222221 012689999999743 33334
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa 332 (384)
..++..+|++|+|+|+++.++++.+..|...+..+.+ ...|+++|+||+|+....+. .++........ .+.++|+
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa 145 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSA 145 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeC
Confidence 5567889999999999998888888888888887653 36899999999999642211 12222222233 4678999
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.++++++++|+..+..
T Consensus 146 ~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 146 KTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987744
No 52
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=5.2e-19 Score=155.77 Aligned_cols=161 Identities=17% Similarity=0.117 Sum_probs=111.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+++|.+|||||||+++|+.........+..+.+.....+...+. ...+.+|||||+.+ +..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~D~~g~~~-------~~~ 71 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE------KIKLQIWDTAGQER-------FRS 71 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCCcHH-------HHH
Confidence 45689999999999999999999865433222232233333333333221 12578999999843 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~---~~~~~~ 330 (384)
.+..++..+|++++|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+....+....+.+.+.. ..+.++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~ 149 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLET 149 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 445668889999999999988777777778777776543 358999999999997543322233333322 346689
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.++++++++++..+
T Consensus 150 Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 150 SAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998653
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.80 E-value=7.7e-19 Score=153.62 Aligned_cols=157 Identities=15% Similarity=0.060 Sum_probs=109.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|.+.+......+..+.+.....+..... ...+.+|||||+.. +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~l~D~~G~~~-------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGK------RVKLQIWDTAGQER-------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCE------EEEEEEEECcchHH-------HHHhHH
Confidence 47999999999999999999987644332232222222222222211 12689999999843 233445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
.+++.+|++++|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+. .++....... +.+.++|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL 145 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence 667899999999999998888888888877765432 46899999999999653221 2222333333 345688999
Q ss_pred cccCHHHHHHHHHhc
Q 016700 334 TELSSEDAVKSLSTE 348 (384)
Q Consensus 334 t~~gv~e~l~~l~~~ 348 (384)
++.++++++++++..
T Consensus 146 ~~~~i~~~~~~~~~~ 160 (161)
T cd04113 146 TGENVEEAFLKCARS 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999864
No 54
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.80 E-value=5.3e-19 Score=156.89 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=107.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|.+... .. +.+|.......+++.. ..+.+|||||..+ +...+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~--------~~i~l~Dt~G~~~-------~~~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKN--------LKFTIWDVGGKHK-------LRPLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECC--------EEEEEEECCCChh-------cchHHHH
Confidence 589999999999999999998632 12 2345444444444332 2789999999843 3445667
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--h------cCCcc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK 329 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~--~------~~~~~ 329 (384)
++..+|+++||+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+. . +.+.+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAGALS-VEEMTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCcccCCC-HHHHHHHhCCccccCCCcEEEEe
Confidence 7899999999999998777776666655554321 224589999999999964311 222333221 1 13446
Q ss_pred cccccccCHHHHHHHHHhccCcc
Q 016700 330 VTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
+|++++.|++++|++|+..+.+.
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHHhhc
Confidence 89999999999999999776543
No 55
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=7e-19 Score=152.19 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=108.8
Q ss_pred EEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHHHHH
Q 016700 180 GLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR 257 (384)
Q Consensus 180 ~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~fl~ 257 (384)
+++|.+|||||||+++|++.... +++++.+|.+.....+.... ..+.+|||||+.+... ....+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--------REFILIDTGGIEPDDEGISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--------eEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 47999999999999999987643 47788888877766665432 2789999999976432 12223445566
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Cccccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSET 334 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~---~~~~sa~t 334 (384)
.++.+|++++|+|+.+.....+.. +...+.. ...|+++|+||+|+...... ...+..++ +.++++.+
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEeccc
Confidence 788999999999998755444432 3344443 25899999999999875443 22233333 45789999
Q ss_pred ccCHHHHHHHHHhc
Q 016700 335 ELSSEDAVKSLSTE 348 (384)
Q Consensus 335 ~~gv~e~l~~l~~~ 348 (384)
+.++++++++|++.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998864
No 56
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=7.5e-19 Score=153.34 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=100.3
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|++.......+. .|.......+... ...+.+|||||..+ +...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~-------~~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKG--------NLSFTAFDMSGQGK-------YRGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEEC--------CEEEEEEECCCCHh-------hHHHHHH
Confidence 489999999999999999998643222222 1222222222221 12689999999853 3445566
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCcc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK 329 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~~~ 329 (384)
+++.+|++|||+|+++..++.....+...+..... ...+.|+++|+||+|+..... .+++.+.+. .+.+.+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEE
Confidence 78899999999999987666555544444433211 113699999999999975422 122222221 112457
Q ss_pred cccccccCHHHHHHHHHh
Q 016700 330 VTSETELSSEDAVKSLST 347 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~ 347 (384)
+|+.++.|+++++++|+.
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 899999999999999864
No 57
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=2.5e-19 Score=182.98 Aligned_cols=158 Identities=25% Similarity=0.257 Sum_probs=117.3
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
.++...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+.... ..+.+|||||+.+....-+.
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--------~~i~l~DT~G~~~~~~~ie~ 282 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--------IPLRLIDTAGIRETDDEVEK 282 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--------eEEEEEeCCCCCCCccHHHH
Confidence 3456689999999999999999999998764 58899999988877776543 26899999999753221111
Q ss_pred hh-HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcc
Q 016700 251 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 329 (384)
Q Consensus 251 l~-~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~ 329 (384)
++ ...+.++..+|++++|+|++++.+.++...|.. ..++|+++|+||+|+....... ......+.+
T Consensus 283 ~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i~ 349 (449)
T PRK05291 283 IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE-----EENGKPVIR 349 (449)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh-----hccCCceEE
Confidence 11 123567899999999999998776665443332 2468999999999997543321 112234568
Q ss_pred cccccccCHHHHHHHHHhccC
Q 016700 330 VTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+|+.++.|+++++++|.+.+.
T Consensus 350 iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 350 ISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred EEeeCCCCHHHHHHHHHHHHh
Confidence 899999999999999988764
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.80 E-value=1e-18 Score=153.49 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=107.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++..... +..++.|+.+.....+..... ...+.||||||+.. +...+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQ------QCMLEILDTAGTEQ-------FTAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCE------EEEEEEEECCCccc-------chhHHH
Confidence 4799999999999999999985432 233444443322222322211 12578999999843 333445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa 332 (384)
.+++.+|++++|+|+++..+++....|..++..+. ...+.|+++|+||+|+.... +..+.+.+.+ ...+.++++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAFLETSA 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEEEEeeC
Confidence 56788999999999998888887777777776543 23468999999999996432 1222232222 234668999
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.++++++.++++.+
T Consensus 146 ~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 146 KAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998654
No 59
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.80 E-value=1.6e-18 Score=151.61 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=108.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++.+... ...++.|+.+.....+.... ....+.+|||||+.+ +.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDG------QWAILDILDTAGQEE-------FSAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECC------EEEEEEEEECCCCcc-------hhHHHH
Confidence 4899999999999999999987643 23444443322222222111 012688999999854 334445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa~ 333 (384)
.++..+|++++|+|+++..+++....|..++..... ..+.|+++|+||+|+..... ..+...+.... ..+.++|+.
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAK 147 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCC
Confidence 667889999999999998888887777777665321 23689999999999975322 11223333333 345688999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.++++++++|+..+
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998654
No 60
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=1.1e-18 Score=153.63 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=101.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.||+++|.+|||||||++++...... . + .+|+......+.... ..+.+|||||+.. +...+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~-~-~pt~g~~~~~~~~~~--------~~~~l~D~~G~~~-------~~~~~~ 62 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLWR 62 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c-c-CCCCCcceEEEEECC--------EEEEEEECCCCHh-------HHHHHH
Confidence 37999999999999999999754332 2 2 223333333333322 2689999999843 444566
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----hc--CCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-----~~--~~~~ 329 (384)
.+++.||++|||+|+++..+++....++.++... ......|+++|+||+|+..... .+++.+.+. .. .+.+
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQA 140 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEE
Confidence 7789999999999999877666665544444321 1234689999999999964321 122222221 11 2347
Q ss_pred cccccccCHHHHHHHHHh
Q 016700 330 VTSETELSSEDAVKSLST 347 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~ 347 (384)
+|++++.|+++++++|++
T Consensus 141 ~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 141 TCATSGDGLYEGLDWLSN 158 (159)
T ss_pred eeCCCCCCHHHHHHHHhc
Confidence 899999999999999874
No 61
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.79 E-value=1.6e-18 Score=152.40 Aligned_cols=153 Identities=20% Similarity=0.115 Sum_probs=105.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceE--EecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g--~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.+|+++|.+|||||||++++...+.... +.. |..+... .+.... ....+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-QLS-TYALTLYKHNAKFEG------KTILVDFWDTAGQER-------FQTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-cCC-ceeeEEEEEEEEECC------EEEEEEEEeCCCchh-------hhhh
Confidence 3799999999999999999987653221 111 2111111 111111 012688999999843 3444
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa 332 (384)
+..+++.+|++|+|+|++++.+++++..|+.++..+. .+.|+++|+||+|+.... .++..+.... ..+.++|+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~Sa 140 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSV--TQKKFNFAEKHNLPLYYVSA 140 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhH--HHHHHHHHHHcCCeEEEEeC
Confidence 5567899999999999999888888888888887643 368999999999985321 1222222222 33568899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.+++++++.+...+
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 141 ADGTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988654
No 62
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=1.4e-18 Score=157.75 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=112.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCc-eeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~t-T~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+|+++|.++||||||+.++...... .+|+.+ +.+-....+..+.. ...+.||||||... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~------~~~l~iwDt~G~~~-------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGR------RVKLQLWDTSGQGR-------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCE------EEEEEEEeCCCcHH-------HHH
Confidence 3478999999999999999999975432 222211 22222222222211 12689999999843 344
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~ 330 (384)
.+..+++.+|++|+|+|++++.+++.++.|++++..+.+ +.|++||+||+|+..... ..++..+..+. +.+.++
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEe
Confidence 555678899999999999999999999999999987643 689999999999964221 12223333333 346789
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
||+++.+++++|++|+..+.
T Consensus 148 SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 148 SPLCNFNITESFTELARIVL 167 (189)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999997653
No 63
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=9.8e-19 Score=157.67 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=107.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|+++|.+|||||||+++|.+..... + .+|..+....+.... .++.+|||||+.. ....+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~~~D~~G~~~-------~~~~~ 78 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGN--------IKFTTFDLGGHQQ-------ARRLW 78 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECC--------EEEEEEECCCCHH-------HHHHH
Confidence 4789999999999999999999865432 1 235555555554332 2689999999843 34456
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-------------
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI------------- 322 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~------------- 322 (384)
..+++.+|+++||+|++++++++....++.++... ..+.+.|+++|+||+|+..... .+++.+.+
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~-~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAAS-EDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCC-HHHHHHHcCCCcccccccccC
Confidence 67789999999999999876665555444444321 1234689999999999864311 22333333
Q ss_pred -HhcCCcccccccccCHHHHHHHHHhc
Q 016700 323 -LKIGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 323 -~~~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
....+.++++.++.|+++.+++|.++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 12235688999999999999999764
No 64
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=2.4e-18 Score=151.97 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=109.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||++++..........+..+.+.....+..... ...+.||||||... +...+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~D~~G~~~-------~~~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH------FVTLQIWDTAGQER-------FRSLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCe------EEEEEEEeCCChHH-------HHHhH
Confidence 468999999999999999999876543222222122211122222111 12688999999743 33445
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc---CCccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKV 330 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~---~~~~~ 330 (384)
..+++.+|++++|+|+++.++++.+..|..++..+... ..+.|+++|+||+|+.......+++.+..... .+.++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 56788999999999999988888888888777654321 23589999999999864322233344444433 35688
Q ss_pred ccccccCHHHHHHHHHhc
Q 016700 331 TSETELSSEDAVKSLSTE 348 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~ 348 (384)
|+.++.++.++|+.++..
T Consensus 152 Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 152 SAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999998754
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.79 E-value=1.7e-18 Score=151.23 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=110.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+.+......+..+.+.....+..... ...+.+|||||... +.....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~-------~~~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK------RVKLQIWDTAGQER-------FRSITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCChHH-------HHHHHH
Confidence 37999999999999999999987654433343333333323332210 12688999999743 223344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa 332 (384)
..+..||++++|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+.... +..+.+.+.. ...+.++++
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa 144 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-GLPFFETSA 144 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHc-CCeEEEEeC
Confidence 557789999999999998888888888888877653 369999999999987522 2233332221 234568899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.+++++++.+++.+
T Consensus 145 ~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 145 KTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 66
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.79 E-value=2.3e-18 Score=150.48 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=108.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++........|..+.+.....+.... ....+.+|||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG------KKVKLAIWDTAGQERF-------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC------EEEEEEEEECCCchhh-------hhhhH
Confidence 3799999999999999999998765332222222111111122111 0126899999997432 22334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~--~~~~~~~sa~t 334 (384)
..++.+|++++|+|+++..+++.+..|..++..+.. ..+.|+++|+||+|+.......++..+... ...+.++|+.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKT 146 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCC
Confidence 557889999999999998888888888888877643 246899999999999733222222323333 34467889999
Q ss_pred ccCHHHHHHHHHhc
Q 016700 335 ELSSEDAVKSLSTE 348 (384)
Q Consensus 335 ~~gv~e~l~~l~~~ 348 (384)
+.|++++++.+.+.
T Consensus 147 ~~gi~~~~~~~~~~ 160 (161)
T cd01863 147 RDGVQQAFEELVEK 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 67
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=5.2e-18 Score=147.97 Aligned_cols=151 Identities=22% Similarity=0.184 Sum_probs=101.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
-|+++|.+|||||||+++|++..... ...+.+|.+.....+.... ...+.+|||||+.+ +...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~-------~~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEK-------FIKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHH-------HHHH
Confidence 58999999999999999999754222 2235667766655554331 13789999999843 3444
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHHh-----cC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILK-----IG 326 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~~~~-----~~ 326 (384)
+..++..||++++|+|+++....+....+ ..+... ..+|+++|+||+|+.... ...+++.+.+.. ..
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~-~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHL-EILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHH-HHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 56677889999999999863222222222 223221 125999999999997642 123444555543 34
Q ss_pred CcccccccccCHHHHHHHHHh
Q 016700 327 CDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~ 347 (384)
+.++|+.++.+++++++.+.+
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 143 IFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEEeCCCCcCHHHHHHHHhh
Confidence 568899999999999988753
No 68
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.79 E-value=1.3e-18 Score=150.95 Aligned_cols=151 Identities=26% Similarity=0.353 Sum_probs=107.2
Q ss_pred EEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhHHHHHH
Q 016700 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRH 258 (384)
Q Consensus 181 lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~~fl~~ 258 (384)
|+|.+|||||||+++|++....+.+++++|.+.....+..+. ..+.+|||||+.+.... ...+...++.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--------KEIEIVDLPGTYSLSPYSEDEKVARDFLLG 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--------eEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence 589999999999999999876678889999988877776543 26899999999654322 11233344333
Q ss_pred cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccccccc
Q 016700 259 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSETEL 336 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa~t~~ 336 (384)
+.+|++++|+|+++.... ..+..++.. .++|+++|+||+|+................ ..+.++++.++.
T Consensus 73 -~~~d~vi~v~d~~~~~~~---~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 73 -EKPDLIVNVVDATNLERN---LYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGE 143 (158)
T ss_pred -CCCcEEEEEeeCCcchhH---HHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCC
Confidence 689999999999874332 223334443 258999999999997543222222222222 346688999999
Q ss_pred CHHHHHHHHHhc
Q 016700 337 SSEDAVKSLSTE 348 (384)
Q Consensus 337 gv~e~l~~l~~~ 348 (384)
++++++..|+..
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999998765
No 69
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=1.2e-18 Score=157.74 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=109.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|...... ..++.|+.+.....+..+.. ...+.||||||..+ +...+..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQ------PCMLEVLDTAGQEE-------YTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCE------EEEEEEEECCCchh-------hHHHHHH
Confidence 5899999999999999999865432 23444432222222222210 12588999999743 3334456
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
++..+|++|+|+|+++..+++.+..|+..+...... ..+.|+++|+||+|+....+. .+...+.... ..+.++|+.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk 146 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence 688899999999999988888888888887765422 246899999999999642221 1112222222 346789999
Q ss_pred cccCHHHHHHHHHhccC
Q 016700 334 TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~ 350 (384)
++.++++++++++..+.
T Consensus 147 ~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 147 TNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 70
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.79 E-value=2.8e-18 Score=150.33 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=107.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCC-CCccCCCCcee-ecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~-~~ia~~~~tT~-~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
++|+++|.+|||||||+++|.... .....|..|+- +...-.+.... . ....+.+|||||... +...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~--~~~~l~i~Dt~G~~~-------~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT---D--NTVELFIFDSAGQEL-------YSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC---C--CEEEEEEEECCCHHH-------HHHH
Confidence 479999999999999999998642 22344544432 21111222111 0 113789999999743 2333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-HHHHHh--cCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILK--IGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l-~~~~~~--~~~~~~s 331 (384)
...++++||++++|+|+++.++++.+..|++++..+. ...|+++|+||+|+....+..... ...... ..+.++|
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 4566889999999999999888888888888877654 358999999999996543211111 111222 3456899
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
+.++.|++++++.|++.+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCChHHHHHHHHHHh
Confidence 999999999999998654
No 71
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.3e-18 Score=175.26 Aligned_cols=161 Identities=20% Similarity=0.274 Sum_probs=117.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh-
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~- 252 (384)
...+|+++|.||+|||||+|+|++.+.. +.++++||.+.....+.... ..+.++||||+....+....+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~lvDT~G~~~~~~~~~~~e~ 243 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--------QKYTLIDTAGIRRKGKVTEGVEK 243 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--------eeEEEEECCCCCCCcchhhHHHH
Confidence 3579999999999999999999987754 48889999887665554432 3689999999976544333222
Q ss_pred ---HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH----h-
Q 016700 253 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K- 324 (384)
Q Consensus 253 ---~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~----~- 324 (384)
...++++++||++|+|+|++++.+.++...+ ..+.. ..+|+++|+||+|+...+ ..+++.+.+. .
T Consensus 244 ~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~-~~~~~-----~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~~ 316 (435)
T PRK00093 244 YSVIRTLKAIERADVVLLVIDATEGITEQDLRIA-GLALE-----AGRALVIVVNKWDLVDEK-TMEEFKKELRRRLPFL 316 (435)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCcEEEEEECccCCCHH-HHHHHHHHHHHhcccc
Confidence 2345678999999999999988777665433 33333 358999999999998532 2333333332 2
Q ss_pred --cCCcccccccccCHHHHHHHHHhccC
Q 016700 325 --IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 325 --~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+.++|+.++.+++++++.+.....
T Consensus 317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 317 DYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 24568899999999999998876553
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.79 E-value=2.2e-18 Score=150.99 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=106.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+.... ..+..|+.+.....+.... ....+.+|||||+.+ +.....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~-------~~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTIEDSYRKQIEIDG------EVCLLDILDTAGQEE-------FSAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-cccCCchhhhEEEEEEECC------EEEEEEEEECCCccc-------chHHHH
Confidence 37999999999999999999976532 2233333222211222111 012688999999854 333444
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa~ 333 (384)
.++..+|++++|+|++++.+++.+..|...+..... ..+.|+++|+||+|+..... ..+...+.... ..+.++|+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence 567889999999999998888877777766654332 23689999999999865321 11222222233 346789999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.++++++++|++.+
T Consensus 146 ~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 146 ERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 73
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1.9e-18 Score=155.70 Aligned_cols=153 Identities=24% Similarity=0.268 Sum_probs=108.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|+++|++|||||||+++|.+.... . ..+|..+..+.+.... ..+.+|||||... +...+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~~--------~~~~l~D~~G~~~-------~~~~~ 80 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIGN--------IKFKTFDLGGHEQ-------ARRLW 80 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEECC--------EEEEEEECCCCHH-------HHHHH
Confidence 468999999999999999999986642 1 2335666666665443 2689999999743 33445
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH------------
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL------------ 323 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~------------ 323 (384)
..+++.+|++++|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+.
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPGAVS-EEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCCCcC-HHHHHHHhCcccccccccccc
Confidence 677899999999999998766655444444443321 234699999999999864311 233333332
Q ss_pred ------hcCCcccccccccCHHHHHHHHHhc
Q 016700 324 ------KIGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 324 ------~~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
...+.++|++++.|+++++++|+..
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 1235688999999999999999864
No 74
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.78 E-value=1.4e-18 Score=154.41 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=101.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|...... ...| |.......+.... ..+.+|||||... +...+.
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~~~~ 71 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYKN--------VKFNVWDVGGQDK-------IRPLWR 71 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEEECC--------EEEEEEECCCCHH-------HHHHHH
Confidence 58999999999999999999865431 1122 2222222332221 2799999999843 344456
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-----Hh--cCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LK--IGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~-----~~--~~~~~ 329 (384)
.++..||++|||+|++++.+++....++.++... ....+.|+++|+||+|+..... .+++.+.+ .. +.+.+
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCCC-HHHHHHHcCCCccCCCcEEEEE
Confidence 6789999999999999877776655444443321 1124689999999999864211 22333322 11 13457
Q ss_pred cccccccCHHHHHHHHHh
Q 016700 330 VTSETELSSEDAVKSLST 347 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~ 347 (384)
+||+++.|++++|++|++
T Consensus 150 ~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 150 SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred eeCCCCCChHHHHHHHhc
Confidence 899999999999999874
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=3.1e-18 Score=148.86 Aligned_cols=158 Identities=18% Similarity=0.095 Sum_probs=108.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|+|||||+++|..........+.++.......+.... ....+.+|||||.... ...+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~-------~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG------KRIDLAIWDTAGQERY-------HALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC------EEEEEEEEECCchHHH-------HHhhH
Confidence 3799999999999999999998765432222222222222222211 0125899999997432 22233
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Ccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa~ 333 (384)
..+..+|++++|+|+++.++++....|..++..+... +.|+++|+||+|+..... ..+.+.+.....+ +.++++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAK 145 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 4467899999999999988888888888888876542 689999999999874321 1223333333333 4588999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.++++++++|...+
T Consensus 146 ~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 146 TGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998653
No 76
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.78 E-value=1.6e-18 Score=153.63 Aligned_cols=151 Identities=23% Similarity=0.271 Sum_probs=103.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
.|+++|.+|||||||+++|++..+. . ...|.......+.... ..+.+|||||..+ +...+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~--~-~~~t~g~~~~~~~~~~--------~~~~i~D~~G~~~-------~~~~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK--K-VAPTVGFTPTKLRLDK--------YEVCIFDLGGGAN-------FRGIWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc--c-ccCcccceEEEEEECC--------EEEEEEECCCcHH-------HHHHHHH
Confidence 3899999999999999999976221 1 1223333333333322 2789999999743 4556778
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHH-HHHH-h----cCCc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT-EEIL-K----IGCD 328 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~-~~~~-~----~~~~ 328 (384)
+++.||+++||+|+++..+++....++..+.... ...+.|+++|+||+|+..... ..+.+. +.+. . +.+.
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEE
Confidence 8999999999999998877777776666665432 234789999999999976432 111110 1111 1 2344
Q ss_pred ccccccc------cCHHHHHHHHHh
Q 016700 329 KVTSETE------LSSEDAVKSLST 347 (384)
Q Consensus 329 ~~sa~t~------~gv~e~l~~l~~ 347 (384)
++++.++ .|+++.|+||++
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 6888887 899999999974
No 77
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=1.8e-18 Score=153.80 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=103.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.... .+. .|.......+.... ..+.+|||||+.. +...+.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~--------~~l~l~D~~G~~~-------~~~~~~ 76 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEG--------YKLNIWDVGGQKT-------LRPYWR 76 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECC--------EEEEEEECCCCHH-------HHHHHH
Confidence 57999999999999999999976432 111 12222222232221 2689999999843 344556
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~~~ 329 (384)
.+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+.... ..+++.+.+. ...+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEe
Confidence 77899999999999998777766655555543321 23469999999999997532 1233333332 224668
Q ss_pred cccccccCHHHHHHHHHh
Q 016700 330 VTSETELSSEDAVKSLST 347 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~ 347 (384)
+|+.++.|++++++++++
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999999875
No 78
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=1.7e-18 Score=178.19 Aligned_cols=160 Identities=23% Similarity=0.251 Sum_probs=116.3
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccch
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL 251 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl 251 (384)
..+++|+|+|.||||||||+|+|++.... +.+.|++|.+...+.+.... ..+.+|||||+..... ....+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~ 107 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--------RRFTVVDTGGWEPDAKGLQASV 107 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--------cEEEEEeCCCcCCcchhHHHHH
Confidence 45689999999999999999999987654 47889999887777665443 2689999999863211 11223
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---c
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---D 328 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~---~ 328 (384)
...+..+++.||++|+|+|+++..+..+ ..+...+.. .++|+++|+||+|+........ .+...++ .
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~~----~~~~~g~~~~~ 177 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEADAA----ALWSLGLGEPH 177 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchhhH----HHHhcCCCCeE
Confidence 3445567889999999999998766544 344555553 3699999999999865322111 2223333 4
Q ss_pred ccccccccCHHHHHHHHHhccCc
Q 016700 329 KVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
++|+.++.|++++++++++.+..
T Consensus 178 ~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 178 PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEcCCCCCcHHHHHHHHhhccc
Confidence 78999999999999999987643
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.78 E-value=3.8e-18 Score=149.09 Aligned_cols=158 Identities=14% Similarity=0.084 Sum_probs=106.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|+|||||+++|+.........+..+.+.....+..... .....+.||||||..+ +...+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~-------~~~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS----DEDVRLMLWDTAGQEE-------FDAITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC----CCEEEEEEeeCCchHH-------HHHhHH
Confidence 37999999999999999999976532211121112221122222100 0113689999999743 334455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa~ 333 (384)
.+++.+|++++|+|++++++++.+..|..++.... .+.|+++|+||+|+....+. .++..+....+ .+.++|+.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 146 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK 146 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 67889999999999999888888887877776533 36899999999998653221 12222333333 45678999
Q ss_pred cccCHHHHHHHHHhc
Q 016700 334 TELSSEDAVKSLSTE 348 (384)
Q Consensus 334 t~~gv~e~l~~l~~~ 348 (384)
++.++++++++|+..
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (162)
T cd04106 147 DDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998753
No 80
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.78 E-value=4.1e-18 Score=146.57 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=108.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+.+......+.++.+.....+.... ....+.+||+||... +.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~-------~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG------KTVKLQIWDTAGQER-------FRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC------EEEEEEEEecCChHH-------HHHHHH
Confidence 3799999999999999999998876554333333333333332221 112689999999843 333455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-ChHHHHHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-EARDRLQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~-~~~e~~~~l~~~~~~--~~~~~~sa~ 333 (384)
..++.+|++++|+|++++++++....|...+..+.. ...|+++|+||+|+. ......+++.+.... ..+.++++.
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 145 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK 145 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence 667889999999999987777777777777766542 368999999999996 222223334444433 456688999
Q ss_pred cccCHHHHHHHHH
Q 016700 334 TELSSEDAVKSLS 346 (384)
Q Consensus 334 t~~gv~e~l~~l~ 346 (384)
++.++++++.+|+
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999876
No 81
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=2.4e-18 Score=154.95 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=104.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||++++...... .+ .+|...+...+.... ..+.+|||||+.. +...+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~~--------~~~~i~D~~Gq~~-------~~~~~ 78 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLW 78 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEECC--------EEEEEEECCCCHH-------HHHHH
Confidence 358999999999999999999854321 11 223333333333322 2689999999843 45566
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~-------~~~ 328 (384)
..+++.||++|||+|+++.++++....++..+.. ...+.+.|++||+||+|+....+ .+++.+.+.-. .+.
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEE
Confidence 7778999999999999987766654433333221 11234689999999999976432 34444443211 233
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+++++|+++.+++|++.+.
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999987653
No 82
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=3.2e-18 Score=152.61 Aligned_cols=166 Identities=16% Similarity=0.060 Sum_probs=109.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC----ccccCCceEEEeCCCCccccccccch
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----AEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~----~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
..+|+++|.+|||||||++++..........+..+.+.....+....... .......+.||||||+.+ +
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------F 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------H
Confidence 46899999999999999999987653222122111122222222111000 000113689999999743 3
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCD 328 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~ 328 (384)
......+++.+|++++|+|+++++++..+..|..++..+.. ..+.|+++|+||+|+..... ..++..+..... .+.
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 34455668899999999999998888888888888775431 23578999999999864321 112223333333 456
Q ss_pred ccccccccCHHHHHHHHHhcc
Q 016700 329 KVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~ 349 (384)
++|++++.++++++++|++.+
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999998654
No 83
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=3.6e-18 Score=150.29 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=107.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecc--eEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~--~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
+|+++|.+|||||||++++......... ..|.... ...+.... ....+.+|||||... +....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~-------~~~~~ 66 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVDFKMKTIEVDG------IKVRIQIWDTAGQER-------YQTIT 66 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECC------EEEEEEEEeCCCcHh-------HHhhH
Confidence 7999999999999999999876542221 2233222 22232221 012688999999743 23334
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~s 331 (384)
..++..+|++++|+|++++.+++.+..|++++..+.+ .+.|+++|+||+|+.... +....+.+.+ ...+.++|
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 143 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-GMDFFETS 143 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 5567889999999999999899988888888876542 368999999999986533 2223333222 24567899
Q ss_pred cccccCHHHHHHHHHhc
Q 016700 332 SETELSSEDAVKSLSTE 348 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~ 348 (384)
++++.+++++|++|+..
T Consensus 144 a~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 144 ACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999754
No 84
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=2.3e-18 Score=153.58 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=104.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||+++|+..+.. .. .+|...+...+.... ..+.+|||||... +...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~l~D~~G~~~-------~~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HT--SPTIGSNVEEIVYKN--------IRFLMWDIGGQES-------LRSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-Cc--CCccccceEEEEECC--------eEEEEEECCCCHH-------HHHHH
Confidence 468999999999999999999875432 11 234444444444332 2789999999843 45566
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----h--cCCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-----~--~~~~ 328 (384)
..+++.||+++||+|+++.+.+.....++.++.... .+.+.|+++|+||+|+..... .+++.+.+. . +.+.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~ 154 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGAMT-PAEISESLGLTSIRDHTWHIQ 154 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEE
Confidence 778899999999999998766555444333332221 234689999999999875311 122222221 1 2356
Q ss_pred ccccccccCHHHHHHHHHh
Q 016700 329 KVTSETELSSEDAVKSLST 347 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~ 347 (384)
++|+.++.|+++++++|++
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 7899999999999999875
No 85
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.78 E-value=3.2e-18 Score=150.86 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=104.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++.+...... +..|+-......+.... -...+.+|||||.... .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK------NICTLQITDTTGSHQF-------PAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC------EEEEEEEEECCCCCcc-------hHHHH
Confidence 4799999999999999999997653221 11111111111111111 0126889999998542 22334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChHHH-HHHHHHHHH--hcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~--~~~~~~~sa 332 (384)
.++..+|++|+|+|+++..+++.+..|++.+..+.. ...+.|+++|+||+|+....+. .+....... ...+.++|+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 457789999999999998888888888777765432 2246899999999999653221 111122222 234678999
Q ss_pred ccccCHHHHHHHHHh
Q 016700 333 ETELSSEDAVKSLST 347 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~ 347 (384)
+++.+++++|++|..
T Consensus 148 ~~g~~v~~~f~~l~~ 162 (165)
T cd04140 148 KTNHNVQELFQELLN 162 (165)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999874
No 86
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.78 E-value=2.7e-18 Score=153.70 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=106.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++..... ..+|..|+.......+.... . ...+.||||||..+. ...+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~-------~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGG----E--PYTLGLFDTAGQEDY-------DRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECC----E--EEEEEEEECCCccch-------hhhhh
Confidence 5799999999999999999997653 23333333222211222211 1 126889999998542 22333
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH----------------HHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----------------QSLT 319 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~----------------~~l~ 319 (384)
.++..+|++|+|+|++++++++... .|..++..+. .+.|+++|+||+|+....+.. +.+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 4678899999999999998888875 4777777654 368999999999986542211 1122
Q ss_pred HHHHhcCCcccccccccCHHHHHHHHHhc
Q 016700 320 EEILKIGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 320 ~~~~~~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+.+....+.++||.++.|++++|+.++..
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 22222346789999999999999998764
No 87
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=2.4e-18 Score=150.42 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=99.5
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+|+|.+|||||||+++|...... .. .+|+......++... ..+.+|||||+.+ +...+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~-------~~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKN--------LKFQVWDLGGQTS-------IRPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECC--------EEEEEEECCCCHH-------HHHHHHH
Confidence 5899999999999999999765432 21 224333333443322 2789999999843 4455667
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCcc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 329 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~~~~ 329 (384)
+++.||++|+|+|++++.++..... +...+... .+.++|+++|+||+|+..... ..++.+.+.. ..+.+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 139 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFK 139 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEE
Confidence 7899999999999987654433322 22222221 224689999999999975321 2223322211 12668
Q ss_pred cccccccCHHHHHHHHHh
Q 016700 330 VTSETELSSEDAVKSLST 347 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~ 347 (384)
+|+.++.|+++++++|++
T Consensus 140 ~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 140 TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eeccCCCCHHHHHHHHhc
Confidence 999999999999999874
No 88
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=2.3e-18 Score=148.70 Aligned_cols=153 Identities=24% Similarity=0.203 Sum_probs=110.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc-cchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~-~gl~~~ 254 (384)
.+|+++|.+|||||||+++|++.... +.+++.+|.+.....+.... ..+.+|||||+.+....- ......
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~ 73 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--------IPVRLIDTAGIRETEDEIEKIGIER 73 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--------EEEEEEECCCcCCCcchHHHHHHHH
Confidence 47999999999999999999987653 47788888877666655432 278999999987643210 011123
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCccccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 334 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t 334 (384)
...++.++|++++|+|++++.+......+.. ...+|+++|+||+|+....+. ........+.++|+.+
T Consensus 74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 74 AREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKT 141 (157)
T ss_pred HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCC
Confidence 4566789999999999998777666554432 246999999999999865432 1111223466889999
Q ss_pred ccCHHHHHHHHHhcc
Q 016700 335 ELSSEDAVKSLSTEG 349 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~ 349 (384)
+.++++++++|.+.+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999987643
No 89
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.78 E-value=2.5e-18 Score=175.05 Aligned_cols=160 Identities=26% Similarity=0.353 Sum_probs=113.8
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
.++...+|+|+|.||||||||+|+|++.+. .++++|+||.+.....+...+ ..+.+|||||+.+....-+.
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--------~~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--------ILIKLLDTAGIREHADFVER 270 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--------EEEEEeeCCCcccchhHHHH
Confidence 456778999999999999999999998765 458999999988877776553 26899999999754321111
Q ss_pred hh-HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcc
Q 016700 251 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 329 (384)
Q Consensus 251 l~-~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~ 329 (384)
.+ .....+++.||++++|+|++++.+.++. |+.++.. .++|+++|+||+|+... + .+.+.+.+ ...+..
T Consensus 271 ~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~~ 340 (442)
T TIGR00450 271 LGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSSN 340 (442)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceEE
Confidence 11 1235678999999999999987766654 4444432 36899999999999753 1 22222111 123456
Q ss_pred cccccccCHHHHHHHHHhccC
Q 016700 330 VTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+|+++ .++++.++.|...+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHH
Confidence 78887 688888888777553
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.78 E-value=3.9e-18 Score=150.26 Aligned_cols=162 Identities=19% Similarity=0.159 Sum_probs=106.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+........+..+.+.....+.... ....+.+|||||+.. +...+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~-------~~~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD------KLVTLQIWDTAGQER-------FQSLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC------EEEEEEEEeCCChHH-------HHhHHH
Confidence 3799999999999999999998754321111111122222222221 012578999999843 233445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcC-C-CCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh---cCCccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN-P-DYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---IGCDKV 330 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~-~-~l~~~p~ivV~NK~Dl~~~~-e~~~~l~~~~~~---~~~~~~ 330 (384)
.+++.||++|+|+|++++.+++....|.+++.... + ...+.|+++|+||+|+.... ...+...+.+.. ..+.++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 67889999999999998777777766666544322 1 12368999999999997321 112233333333 346688
Q ss_pred ccccccCHHHHHHHHHhccCc
Q 016700 331 TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~ 351 (384)
|+.++.|++++++++++.+..
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 148 SAKEAINVEQAFETIARKALE 168 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999876543
No 91
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=1.1e-17 Score=146.90 Aligned_cols=155 Identities=22% Similarity=0.217 Sum_probs=105.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
+.|+|+|.+|||||||+++|+..+......+++|.+.....+..... ....+.+|||||+.+ +...+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~iiDtpG~~~-------~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVL-----KIPGITFIDTPGHEA-------FTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccC-----CcceEEEEeCCCcHH-------HHHHHH
Confidence 35899999999999999999987765555566776655555543200 023799999999843 233344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HH-HHHHHHHHH--------hcC
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DR-LQSLTEEIL--------KIG 326 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e~-~~~l~~~~~--------~~~ 326 (384)
.++..||++++|+|+++....+.+..+ ..+.. .++|+++|+||+|+.... +. .+.+.+... ...
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~-~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAI-KLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence 567889999999999886544444333 33333 368999999999987432 11 122221111 123
Q ss_pred CcccccccccCHHHHHHHHHhcc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+.++++.++.++++++++|.+..
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEEeecccCCCHHHHHHHHHHhh
Confidence 55789999999999999998654
No 92
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.78 E-value=3.4e-18 Score=149.87 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=106.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++....... .+..|+.+.....+..... ...+.||||||... +...+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDSS------PSVLEILDTAGTEQ-------FASMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECCE------EEEEEEEECCCccc-------ccchHH
Confidence 479999999999999999998765432 2222222222222322210 12578999999743 333445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
.+++.||++++|+|+++..++++...|..++..... ..+.|+++|+||+|+...... .++....... ..+.++|+.
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAK 146 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCC
Confidence 567889999999999998888888888777775432 246999999999998542211 1111222222 345688999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.++++++.+++..+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd04176 147 SKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998654
No 93
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=4.2e-18 Score=155.47 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=110.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|.+........+..+.+.....+..... ...+.||||||... +...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~D~~G~~~-------~~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE------RVKLQIWDTAGQER-------FRTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCE------EEEEEEEeCCCchh-------HHHHH
Confidence 468999999999999999999976532211111111111222222110 12588999999733 34455
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa 332 (384)
..++..++++++|+|++++.+++.+..|++.+..+. ...|+++|+||+|+...... .++..+.... ..+.++|+
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 149 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSA 149 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 667888999999999999888888888888877644 35899999999999753221 1222222333 34568999
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.++++++++|...+..
T Consensus 150 ~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 150 KENINVEEMFNCITELVLR 168 (199)
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999887644
No 94
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.77 E-value=3.3e-18 Score=152.92 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=102.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||+++|...+. . ++. +|.......+.... ..+.+|||||... +...+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~-~~~-~t~~~~~~~~~~~~--------~~l~l~D~~G~~~-------~~~~~ 74 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-V-TTI-PTIGFNVETVTYKN--------ISFTVWDVGGQDK-------IRPLW 74 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-C-CcC-CccccceEEEEECC--------EEEEEEECCCChh-------hHHHH
Confidence 36899999999999999999965432 1 121 23222222232221 2689999999843 34456
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~~~ 328 (384)
..+++.||++|||+|++++++++....++..+... ....+.|++||+||+|+..... .+++.+.+.. +.+.
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEEE
Confidence 66789999999999999877776665555444321 1224689999999999975321 1223222211 1234
Q ss_pred ccccccccCHHHHHHHHHhcc
Q 016700 329 KVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~ 349 (384)
++|++++.|+++++++|++.+
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999998764
No 95
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.77 E-value=7.1e-19 Score=168.01 Aligned_cols=114 Identities=39% Similarity=0.670 Sum_probs=95.4
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC---cccc------CCceEEEeCCCCcccccccc
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---AEKY------SSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~---~~~~------~~~i~i~DtPG~~~~a~~~~ 249 (384)
|+|||+||||||||+|+|++.+..+++|||||++|+.|.+....... ...+ ...+.++||||++++++.++
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 68999999999999999999999889999999999999987643100 0001 11489999999999999999
Q ss_pred chhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHHHhcCC
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP 292 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL~~~~~ 292 (384)
+++..|+.++++||++++|||+.. .++..++..+..||..++.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~ 133 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADL 133 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999853 2688888888888887754
No 96
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=4.7e-18 Score=182.81 Aligned_cols=185 Identities=22% Similarity=0.235 Sum_probs=126.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh--
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-- 252 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~-- 252 (384)
..+|+|+|.||||||||+|+|++.+.. +.++++||.++....+.... ..+.+|||||+.+......+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--------~~~~liDTaG~~~~~~~~~~~e~~ 521 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--------EDWLFIDTAGIKRRQHKLTGAEYY 521 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--------CEEEEEECCCcccCcccchhHHHH
Confidence 479999999999999999999998764 48899999988777665543 2688999999865432211111
Q ss_pred --HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH----hcC
Q 016700 253 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----KIG 326 (384)
Q Consensus 253 --~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~----~~~ 326 (384)
.....++++||++++|+|+++..+.++...+ ..+.. .++|+++|+||+|+..... .+.+.+.+. ...
T Consensus 522 ~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~~ 594 (712)
T PRK09518 522 SSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRVT 594 (712)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCCC
Confidence 1123557899999999999988777776544 33332 3689999999999976422 223333222 222
Q ss_pred ---CcccccccccCHHHHHHHHHhccCcccccccccccccccchhhhcCCCc
Q 016700 327 ---CDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 375 (384)
Q Consensus 327 ---~~~~sa~t~~gv~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~rp 375 (384)
+.++|+.++.|++++++.+++.............++....+.++.+|+|
T Consensus 595 ~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p 646 (712)
T PRK09518 595 WARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHP 646 (712)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCC
Confidence 2468999999999999999887755443333333333333434444443
No 97
>PLN03110 Rab GTPase; Provisional
Probab=99.77 E-value=3.3e-18 Score=158.37 Aligned_cols=160 Identities=18% Similarity=0.110 Sum_probs=114.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+++|.+|||||||+++|++........+....+.....+..... ...+.||||||... +...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~------~~~l~l~Dt~G~~~-------~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK------TVKAQIWDTAGQER-------YRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE------EEEEEEEECCCcHH-------HHHH
Confidence 3569999999999999999999987654333333223333333332221 12689999999743 4445
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~ 330 (384)
+..+++.++++|+|+|+++..+++.+..|+..+..+.+ .+.|+++|+||+|+.... +....+.+. ..+.+.++
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~ 154 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-EGLSFLET 154 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHH-cCCEEEEE
Confidence 56678899999999999998888888888888876543 468999999999986432 222222221 23456789
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
++.++.++++++++|+..+.
T Consensus 155 SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIY 174 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 98
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.77 E-value=2.5e-18 Score=151.31 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=106.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||++++..... ...|+.++.......+..+.. ...+.||||||.... .......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~D~~g~~~~------~~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGE------QVSLEILDTAGQQQA------DTEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCE------EEEEEEEECCCCccc------ccchHHH
Confidence 589999999999999999986432 234444442222222222110 125889999998631 1122445
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCcccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE 333 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa~ 333 (384)
++..+|++|+|+|+++..+++.+..|...+..+.....+.|+++|+||+|+.... +....+.+.+. ..+.++|+.
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCC
Confidence 6788999999999999888888888887777654323469999999999985421 22222322222 345688999
Q ss_pred cc-cCHHHHHHHHHhcc
Q 016700 334 TE-LSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~-~gv~e~l~~l~~~~ 349 (384)
++ .+++++|+.|+..+
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 98 59999999998654
No 99
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=4.9e-18 Score=148.06 Aligned_cols=150 Identities=18% Similarity=0.225 Sum_probs=103.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
||+++|.+|||||||++++++.... . ..+|.......+.+.. ..+.+|||||... +...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~--------~~~~i~D~~G~~~-------~~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKN--------VSFTVWDVGGQDK-------IRPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECC--------EEEEEEECCCChh-------hHHHHHH
Confidence 6899999999999999999987632 1 1223333333333322 2689999999854 3344566
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 330 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~~~~ 330 (384)
.+..+|++++|+|+++++++.....++..+..... ..+.|+++|+||+|+..... .+++.+.+. ...+.++
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGALS-VSELIEKLGLEKILGRRWHIQPC 140 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccccC-HHHHHHhhChhhccCCcEEEEEe
Confidence 77889999999999987766666555554443221 35799999999999976331 223333322 2246688
Q ss_pred ccccccCHHHHHHHHHh
Q 016700 331 TSETELSSEDAVKSLST 347 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~ 347 (384)
++.++.|+++++.+|.+
T Consensus 141 Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 141 SAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eCCCCCCHHHHHHHHhh
Confidence 99999999999999864
No 100
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.6e-17 Score=145.51 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=108.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh---
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 252 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~--- 252 (384)
.+|+++|.+|+|||||+++|++....+ .+++++|.......+.... ..+.+|||||+.+..+....+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~iiDtpG~~~~~~~~~~~e~~~ 74 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--------KKYTLIDTAGIRRKGKVEEGIEKYS 74 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--------eeEEEEECCCCccccchhccHHHHH
Confidence 579999999999999999999876443 6678888766555544332 2689999999876533322221
Q ss_pred -HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh------
Q 016700 253 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK------ 324 (384)
Q Consensus 253 -~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e~~~~l~~~~~~------ 324 (384)
...+.++..+|++++|+|++++.+..... +...+.. .+.|+++|+||+|+.... +..+.+.+.+..
T Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (174)
T cd01895 75 VLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD 148 (174)
T ss_pred HHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence 22345678899999999999876655443 2233332 358999999999997642 223333333322
Q ss_pred -cCCcccccccccCHHHHHHHHHh
Q 016700 325 -IGCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 325 -~~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
..+.++++.++.+++++++.+..
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHH
Confidence 24557899999999999988764
No 101
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.5e-18 Score=152.12 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=125.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
..+.+|+++|.++||||+|+.++........ ..+|+ +-...++..++. ...+++|||+|+ +.+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~--~~sTiGIDFk~kti~l~g~------~i~lQiWDtaGQ-------erf 74 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS--FISTIGIDFKIKTIELDGK------KIKLQIWDTAGQ-------ERF 74 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCC--ccceEEEEEEEEEEEeCCe------EEEEEEEEcccc-------hhH
Confidence 4578999999999999999999997653321 12233 444445554432 247899999998 557
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCC
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGC 327 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~ 327 (384)
...+-.|+++|+.+++|||+++..+++.+..|+..++++.++ ..|.++|+||+|+...+ +..+.+..++ .+.+
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F 151 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKF 151 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccccccHHHHHHHHHHh-CCeE
Confidence 888899999999999999999999999999999999988763 79999999999998643 3344444443 3456
Q ss_pred cccccccccCHHHHHHHHHhccCc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.++||+++.++++.|..|+..+..
T Consensus 152 ~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 152 FETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred EEccccCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999988753
No 102
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=6.9e-18 Score=155.74 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=110.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|++.+......+..+.+.....+..... ....+.+|||||... +.....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~-----~~~~l~i~Dt~G~~~-------~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPG-----VRIKLQLWDTAGQER-------FRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCC-----CEEEEEEEeCCcchh-------HHHHHH
Confidence 58999999999999999999987643322222222222222222110 112689999999743 333445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa 332 (384)
.++..+|++|+|+|++++.+++.+..|+.++..+.. ....|+++|+||+|+.... +....+.+.+. ..+.++|+
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSA 148 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeC
Confidence 678899999999999998888888888887765432 2346789999999986532 22333333322 45678999
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
+++.++++++++|+..+.
T Consensus 149 k~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 149 RTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998654
No 103
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=7.2e-18 Score=151.51 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=107.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|.+.... ..+..|+.......+..... ....+.||||||..+ +......
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~-----~~~~l~i~Dt~G~~~-------~~~~~~~ 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNG-----KIIELALWDTAGQEE-------YDRLRPL 68 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCC-----cEEEEEEEECCCchh-------HHHHHHH
Confidence 7999999999999999999976543 23333332222222322210 112689999999743 2333344
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-----HHHHHHHHHHhc---CCc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI---GCD 328 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-----~~~~l~~~~~~~---~~~ 328 (384)
+++.||++++|+|+++..+++.+. .|..++..+. .+.|+++|+||+|+..... ..++..+..... .+.
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 678999999999999988887774 4666665543 3689999999999865320 122222333333 346
Q ss_pred ccccccccCHHHHHHHHHhccCc
Q 016700 329 KVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
++|+.++.++++++..+...+..
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 88999999999999999887654
No 104
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=8.2e-18 Score=147.10 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=106.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc--cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i--a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.+|+++|.+|||||||+++|++.+... .+..+.+... ..+.... ....+.+|||||... +...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~v~~~~------~~~~~~i~D~~G~~~-------~~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLT--QTVNLDD------TTVKFEIWDTAGQER-------YRSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECC------EEEEEEEEeCCchHH-------HHHH
Confidence 589999999999999999999876432 1222211111 1222211 112689999999743 2223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh--cCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e~~~~l~~~~~~--~~~~~~s 331 (384)
...+++.+|++++|+|++++.+++....|+..+..... ...|+++|+||+|+.... ...+...+.... ..+.++|
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEE
Confidence 34467889999999999988878877777777765432 468999999999987321 112233333333 3466889
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
+.++.++++++++|++.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 145 AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 105
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=6.2e-18 Score=149.90 Aligned_cols=159 Identities=17% Similarity=0.096 Sum_probs=108.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh-HH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~-~~ 254 (384)
..+|+++|.+|||||||+++++.........+....+.....+..... ...+.||||||..+ +. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGE------RIKVQLWDTAGQER-------FRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCe------EEEEEEEeCCChHH-------HHHhh
Confidence 368999999999999999999876532222221112222222222210 12689999999743 22 12
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e----~~~~l~~~~~~~~~~~~ 330 (384)
+..+++.+|++++|+|++++.+++.+..|..++..+.. ..+.|+++|+||+|+....+ ....+.+. ..+.+.++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~ 146 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTDLAQRFADA-HSMPLFET 146 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHHHHHHHHHH-cCCcEEEE
Confidence 34557889999999999999999998888888876542 24689999999999865432 22223222 23456788
Q ss_pred cccc---ccCHHHHHHHHHhcc
Q 016700 331 TSET---ELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t---~~gv~e~l~~l~~~~ 349 (384)
|+.+ ..+++++|..++..+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9998 889999999998654
No 106
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=5.7e-18 Score=152.68 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=109.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++........+..+.+.....+..... ...+.+|||||... +...+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~g~~~-------~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK------IIKLQIWDTNGQER-------FRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCCcHH-------HHhhHH
Confidence 47999999999999999999976543211221122222222222110 12678999999743 333456
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa~ 333 (384)
.+++.+|++|+|+|++++++++.+..|+.++..+.. ...|+++|+||+|+...... .+......... .+.++++.
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 145 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAK 145 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 678899999999999998888888888888877643 34899999999998743211 11112222223 46688999
Q ss_pred cccCHHHHHHHHHhccC
Q 016700 334 TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~ 350 (384)
++.++++++++|+..+.
T Consensus 146 ~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 146 QSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 107
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.77 E-value=5.2e-18 Score=157.68 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=106.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|...+.. . + .+|............ ..+.||||||... +.....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~-~-~~Tig~~~~~~~~~~--------~~l~iwDt~G~e~-------~~~l~~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-D-T-VSTVGGAFYLKQWGP--------YNISIWDTAGREQ-------FHGLGS 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-C-C-CCccceEEEEEEeeE--------EEEEEEeCCCccc-------chhhHH
Confidence 37999999999999999999977542 1 1 223322222221111 2689999999843 233344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC-------------------h----HH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-------------------A----RD 313 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~-------------------~----~e 313 (384)
.+++.+|++|+|+|++++.+++.+..++..+.... ..+.|+|+|+||+|+.. . .+
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccccccccccccccccccccCCHH
Confidence 56789999999999999989988877766665432 23589999999999864 1 12
Q ss_pred HHHHHHHHHHh-------------cCCcccccccccCHHHHHHHHHhccC
Q 016700 314 RLQSLTEEILK-------------IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 314 ~~~~l~~~~~~-------------~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
....+.+.+.. ..+.++||.++.+++++|..++..+.
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22233322221 23678999999999999999987664
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.77 E-value=4.2e-18 Score=153.36 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=106.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++...... ..+|........-.+.... .....+.+|||||... +...+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~-------~~~~~~ 70 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGN-----SKGITFHFWDVGGQEK-------LRPLWK 70 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccC-----CCceEEEEEECCCcHh-------HHHHHH
Confidence 47999999999999999999875432 2233221111111121110 0112689999999732 444556
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHH--HHh---cCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE--ILK---IGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~--~~~---~~~~~ 329 (384)
.+++.||+++||+|+++..+++....++.++..+.. ..++|+++|+||+|+.... +..+.+... +.. ..+.+
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQP 149 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEE
Confidence 668899999999999987767666666666655432 2469999999999986421 222222211 101 12457
Q ss_pred cccccccCHHHHHHHHHhccCccc
Q 016700 330 VTSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
+|+.++.|+++++++|...+.+..
T Consensus 150 ~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 150 ACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred eecccCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999998775433
No 109
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.76 E-value=1e-17 Score=149.11 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=107.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCce-eecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT-~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+++|.+|||||||++++...... ..|..|. .+.....+..... ...+.||||||..+ +....
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~~~ 66 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGV------PFSLQLWDTAGQER-------FKCIA 66 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCE------EEEEEEEeCCChHH-------HHhhH
Confidence 37999999999999999999986532 2232221 2222222322211 12689999999843 33344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHHhc--CCccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI--GCDKV 330 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~---~~~l~~~~~~~--~~~~~ 330 (384)
..+++.+|++++|+|+++..+++....|+.++..... ....|+++|+||+|+....+. .+...+....+ .+.++
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 5668899999999999988888888888877754321 124679999999998643221 11222222333 34688
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++..|+..+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987653
No 110
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.76 E-value=1.9e-17 Score=147.24 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=101.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC---------------CCCceeecceEEecCCCCCCccccCCceEEEeCCCCc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 242 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~---------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~ 242 (384)
.|+++|.+++|||||+++|++....+.. ..++|..+....+.+... .. ....+.||||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~--~~~~~~l~Dt~G~~ 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DG--QEYLLNLIDTPGHV 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CC--CcEEEEEEECCCCh
Confidence 5899999999999999999875322211 112344333322222100 00 12268899999995
Q ss_pred cccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHH
Q 016700 243 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTE 320 (384)
Q Consensus 243 ~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~ 320 (384)
+ +...+.+++..+|++|+|+|+++....+++..+..... .++|+++|+||+|+.... +..+++.+
T Consensus 79 ~-------~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~ 145 (179)
T cd01890 79 D-------FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSADPERVKQQIED 145 (179)
T ss_pred h-------hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCCHHHHHHHHHH
Confidence 4 44556677889999999999998666666555543222 358999999999986432 22233333
Q ss_pred HHHh--cCCcccccccccCHHHHHHHHHhcc
Q 016700 321 EILK--IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 321 ~~~~--~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.- ..+.++|+.++.++++++++|++.+
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3211 0245789999999999999998765
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=9.2e-18 Score=145.60 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=111.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|++|||||||+++|++.. ....+..++.+.....+.... ....+.+||+||..+ +......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~-------~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG------ETYTLDILDTAGQEE-------FSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC------EEEEEEEEECCChHH-------HHHHHHH
Confidence 58999999999999999999775 345555555544444443321 012688999999854 2333445
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh--cCCccccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVTSET 334 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e~~~~l~~~~~~--~~~~~~sa~t 334 (384)
+++.+|++++|+|+++++++.+...++..+...... ...|+++|+||+|+.... ...+........ ..+.++++.+
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCC
Confidence 678899999999999888777777777776654321 369999999999987622 122333333333 3467899999
Q ss_pred ccCHHHHHHHHHhc
Q 016700 335 ELSSEDAVKSLSTE 348 (384)
Q Consensus 335 ~~gv~e~l~~l~~~ 348 (384)
+.++++++++|...
T Consensus 146 ~~~i~~l~~~l~~~ 159 (160)
T cd00876 146 NINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 112
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.76 E-value=8e-18 Score=151.15 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=108.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+++|||||+.++...... ..|..|........+..+. . ..++.||||+|..+. .....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~~~~----~--~v~l~i~Dt~G~~~~-------~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVSVDG----N--TVNLGLWDTAGQEDY-------NRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcceeeeEEEEEECC----E--EEEEEEEECCCCccc-------cccch
Confidence 57999999999999999999976532 2232222111111222221 1 137899999998543 22234
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-----------HHHHHHHHHHHh
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-----------DRLQSLTEEILK 324 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-----------e~~~~l~~~~~~ 324 (384)
.+++.||++|+|+|++++.+++.+ +.|..++..+.+ +.|+++|+||+||.+.. ...++..+....
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 467899999999999999999987 678888877653 68999999999995421 112222233333
Q ss_pred c---CCcccccccccCHHHHHHHHHhcc
Q 016700 325 I---GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 325 ~---~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
. .+.++||+++.+++++|..+++.+
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 3 356899999999999999998765
No 113
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.76 E-value=8e-18 Score=149.06 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=106.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++....... .+. .|.......+..... .....+.+|||||+.... ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~----~~~~~l~i~Dt~G~~~~~-------~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KYV-ATLGVEVHPLDFHTN----RGKIRFNVWDTAGQEKFG-------GLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CceeeEEEEEEEEEC----CEEEEEEEEECCCChhhc-------cccH
Confidence 379999999999999999998554221 111 232222222211100 011268999999985431 1123
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~--~~~~~~~sa~t 334 (384)
.++..+|++|+|+|+++..+++.+..|..++..+.. +.|+++|+||+|+...... ....+... ...+.++|+++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYYEISAKS 143 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEEEEeCCC
Confidence 456789999999999998888888888888877653 7999999999999743211 11122222 23467999999
Q ss_pred ccCHHHHHHHHHhccC
Q 016700 335 ELSSEDAVKSLSTEGG 350 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~~ 350 (384)
+.++++++++|+..+.
T Consensus 144 ~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 144 NYNFEKPFLWLARKLL 159 (166)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999999997763
No 114
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.76 E-value=9.6e-18 Score=151.61 Aligned_cols=158 Identities=14% Similarity=0.076 Sum_probs=108.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecc-eEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~-~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
+||+|+|.+|||||||+++|.........|..|+-... ...+..... ...+.+|||||.... ....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~D~~G~~~~-------~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER------VVTLGIWDTAGSERY-------EAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE------EEEEEEEECCCchhh-------hhhh
Confidence 47999999999999999999987654434443332111 112222211 125789999998432 2223
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-----HHHHHHHHHHhc--CCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI--GCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-----~~~~l~~~~~~~--~~~ 328 (384)
..++..+|++++|+|+++..+++....|+.++.... .+.|+++|+||+|+....+ ..+++.+..... .+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 345778999999999999888887777877777643 2689999999999864221 012223333333 345
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+.++.++++++++++..+.
T Consensus 145 ~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 145 ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999997763
No 115
>PTZ00369 Ras-like protein; Provisional
Probab=99.76 E-value=5.3e-18 Score=153.37 Aligned_cols=160 Identities=18% Similarity=0.115 Sum_probs=109.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++...... ..+..|+.......+..+.. ...+.||||||..+ +...+.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~l~~ 71 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDEE------TCLLDILDTAGQEE-------YSAMRD 71 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECCE------EEEEEEEeCCCCcc-------chhhHH
Confidence 58999999999999999999976432 12222221111122222110 12578999999854 333455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
.++..+|++++|+|++++++++.+..|..++..+.. ..+.|+++|+||+|+...... .++..+.... ..+.++|+.
T Consensus 72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak 150 (189)
T PTZ00369 72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAK 150 (189)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCC
Confidence 677889999999999999888888888888776542 236899999999998643211 1112222223 345689999
Q ss_pred cccCHHHHHHHHHhccCc
Q 016700 334 TELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~~ 351 (384)
++.|++++|.+|++.+..
T Consensus 151 ~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRK 168 (189)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987644
No 116
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.76 E-value=8.7e-18 Score=149.88 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=107.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++...+.. ..+..|+-......+..+.. ...+.||||||..+ +...+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDNE------PALLDILDTAGQAE-------FTAMRD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECCE------EEEEEEEeCCCchh-------hHHHhH
Confidence 47999999999999999999876532 12222221111111221110 12689999999854 333455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa 332 (384)
.++..+|++|+|+|++++.+++....|...+..... ..+.|+++|+||+|+.... +....+.+.. ...+.++|+
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sa 146 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETSA 146 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEec
Confidence 667889999999999999999988877777765431 2368999999999986432 2222222221 234668999
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
.++.+++++|++|+..+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 147 ALRHYIDDAFHGLVREIR 164 (172)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 117
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1.1e-17 Score=156.68 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=108.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.++||||||++++...... ..|..|........+..+. . ...+.||||+|... +....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i~~~~----~--~v~l~iwDTaG~e~-------~~~~~ 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGLETEE----Q--RVELSLWDTSGSPY-------YDNVR 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEEEECC----E--EEEEEEEeCCCchh-------hHHHH
Confidence 368999999999999999999876422 2232222111111122221 1 13689999999743 33334
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh------------H-HHHHHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------------R-DRLQSLTEE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~------------~-e~~~~l~~~ 321 (384)
..++..||++|+|+|+++.++++. ...|..++..+.+ ..|+++|+||+||... . -..++..+.
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 457899999999999999999887 4778888887653 5799999999998531 0 112233344
Q ss_pred HHhcC---Cccccccccc-CHHHHHHHHHhccC
Q 016700 322 ILKIG---CDKVTSETEL-SSEDAVKSLSTEGG 350 (384)
Q Consensus 322 ~~~~~---~~~~sa~t~~-gv~e~l~~l~~~~~ 350 (384)
.+.++ +.++||+++. +++++|..++....
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 44454 4589999997 89999999987653
No 118
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.76 E-value=7.2e-18 Score=152.59 Aligned_cols=159 Identities=17% Similarity=0.110 Sum_probs=106.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||++++....... .|..|........+..+. ....+.||||||..+. ...+.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~~-------~~l~~ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVDG------LHIELSLWDTAGQEEF-------DRLRS 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEECC------EEEEEEEEECCCChhc-------ccccc
Confidence 379999999999999999999765322 122121111111222111 1126899999998542 11223
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~~ 322 (384)
.++..+|++++|+|++++++++... .|..++..+. .+.|+++|+||+|+....+.. ++..+..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 3568899999999999988888775 4677776543 368999999999997543211 1112222
Q ss_pred Hh---cCCcccccccccCHHHHHHHHHhccCcc
Q 016700 323 LK---IGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 323 ~~---~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
.. ..+.++||+++.+++++|++|+..+...
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 23 3356899999999999999999877543
No 119
>PLN03118 Rab family protein; Provisional
Probab=99.76 E-value=9.9e-18 Score=154.28 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=108.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.-.+|+|+|.+|||||||+++|+...... ..+.++.+.....+..+.. ...+.||||||+.. +...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~~ 78 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGK------RLKLTIWDTAGQER-------FRTL 78 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCE------EEEEEEEECCCchh-------hHHH
Confidence 34689999999999999999999765421 1111111111222222110 12689999999854 3344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~ 330 (384)
+..+++.+|++|+|+|+++.++++.+.. |..++..+.. ....|+++|+||+|+...... .++..+..... .+.++
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 157 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLEC 157 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEE
Confidence 5567889999999999999888877754 4455554442 245799999999998643221 12222223333 35688
Q ss_pred ccccccCHHHHHHHHHhccCcc
Q 016700 331 TSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
|+.++.++++++++|+..+...
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.76 E-value=1.3e-17 Score=145.63 Aligned_cols=151 Identities=26% Similarity=0.284 Sum_probs=100.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|+..+.. ...| |.......+.... ...+.+|||||... +...+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~-------~~~l~i~D~~G~~~-------~~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEK-------HLSLTVWDVGGQEK-------MRTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCC-------ceEEEEEECCCCHh-------HHHHHHH
Confidence 5899999999999999999987542 1122 2222222332211 12689999999843 4455667
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--h------cCCcc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK 329 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~--~------~~~~~ 329 (384)
++..+|++++|+|++++.++.....++.++... ....+.|+++|+||+|+..... .+++...+. . ..+.+
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRDWYVQP 141 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCcEEEEe
Confidence 789999999999999876666655555444322 1234799999999999864211 122222221 1 12456
Q ss_pred cccccccCHHHHHHHHHh
Q 016700 330 VTSETELSSEDAVKSLST 347 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~ 347 (384)
+|+.++.|+++++++|+.
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 899999999999999863
No 121
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=4.3e-18 Score=141.82 Aligned_cols=113 Identities=34% Similarity=0.555 Sum_probs=87.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc--chhHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN 254 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~--gl~~~ 254 (384)
+|+|+|.||||||||+|+|++.+. .+++.+++|..+..+.+.... ..+.|+||||+.+...... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~~~~vDtpG~~~~~~~~~~~~~~~~ 72 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--------KKFILVDTPGINDGESQDNDGKEIRK 72 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--------EEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--------eeEEEEeCCCCcccchhhHHHHHHHH
Confidence 699999999999999999998754 458899999988776655443 2679999999987644322 13445
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
+++++..+|+++||+|+++ ...++...+.++|+ ..+|+++|+||
T Consensus 73 ~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 73 FLEQISKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7888899999999999776 22344556666663 36999999998
No 122
>PRK04213 GTP-binding protein; Provisional
Probab=99.76 E-value=3.1e-17 Score=149.38 Aligned_cols=158 Identities=24% Similarity=0.262 Sum_probs=103.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc----ccch
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GKGL 251 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~----~~gl 251 (384)
..+|+++|.+|||||||+|+|++.....+..|++|..+....+ ..+.+|||||+...... .+.+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDW------------GDFILTDLPGFGFMSGVPKEVQEKI 76 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEee------------cceEEEeCCccccccccCHHHHHHH
Confidence 3689999999999999999999987666778888876543222 15899999996321110 1222
Q ss_pred hHHHHH----HcccCCeEEEEeeCCCCCCH-h---------HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHH
Q 016700 252 GRNFLR----HLRRTRLLVHVIDAAAENPV-N---------DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQ 316 (384)
Q Consensus 252 ~~~fl~----~i~~ad~il~VvD~s~~~~~-~---------~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e~~~ 316 (384)
...+.. .+..++++++|+|.+..... + ....+...+.. .+.|+++|+||+|+.... +..+
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~ 151 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLD 151 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHH
Confidence 222222 34567899999998653211 0 11222333332 368999999999997543 2344
Q ss_pred HHHHHHHhc--------CCcccccccccCHHHHHHHHHhccCc
Q 016700 317 SLTEEILKI--------GCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 317 ~l~~~~~~~--------~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
++.+.+... .+.++|+.++ |+++++++|+..+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 444443310 2467899999 999999999987644
No 123
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=7.2e-18 Score=149.90 Aligned_cols=160 Identities=18% Similarity=0.082 Sum_probs=106.3
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeec-ceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p-~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
|...+|+++|.+|||||||++++.+....+..|..|+... ....+..... ...+.+||++|.... .
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~------~~~l~~~d~~g~~~~-------~ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ------EKYLILREVGEDEVA-------I 68 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe------EEEEEEEecCCcccc-------c
Confidence 4567899999999999999999998765434454443221 1122332221 125889999998542 2
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD 328 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e----~~~~l~~~~~~~~~~ 328 (384)
..+..+++.||++|+|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+....+ ..+++.+.+....+.
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL 144 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence 2334557899999999999987666655555544421 13689999999999964332 122332222111245
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+.++.+++++++.|++.+.
T Consensus 145 ~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 145 HFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEEeccCccHHHHHHHHHHHhh
Confidence 7899999999999999987653
No 124
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=2.6e-17 Score=142.65 Aligned_cols=158 Identities=27% Similarity=0.351 Sum_probs=109.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc-ccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~-~~gl~~~ 254 (384)
.+|+++|.+|||||||+|+|.+.+..+ .+.+.+|.......+.... ..+.+|||||+.+.... ...+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~ 75 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD--------AQIIFVDTPGIHKPKKKLGERMVKA 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC--------eEEEEEECCCCCcchHHHHHHHHHH
Confidence 469999999999999999999886543 5556666655555443321 26899999998754321 1123334
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc----CCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~----~~~~~ 330 (384)
....+..+|++++|+|+++..... ...+...+..+ +.|+++|+||+|+....+....+.+.+... .+..+
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS-----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI 149 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh-----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence 456688899999999999763222 23344444432 589999999999985444444444444332 34578
Q ss_pred ccccccCHHHHHHHHHhc
Q 016700 331 TSETELSSEDAVKSLSTE 348 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~ 348 (384)
++.++.+++++++.|.+.
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 899999999999998754
No 125
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.75 E-value=1.2e-17 Score=154.96 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=108.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceE--EecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g--~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.+|+++|.+|||||||++++...+.... + .+|+..... .+.... . ...+.+|||||... +...
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~-~-~~tig~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~-------~~~~ 78 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK-Y-EPTIGVEVHPLDFFTNC----G--KIRFYCWDTAGQEK-------FGGL 78 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCc-c-CCccceeEEEEEEEECC----e--EEEEEEEECCCchh-------hhhh
Confidence 6899999999999999999876543211 1 112211111 111111 0 12789999999844 2333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa 332 (384)
+..++..++++|+|+|+++..+++.+..|..++..+. .+.|+++|+||+|+.......+.+ +.... +.+.++|+
T Consensus 79 ~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SA 154 (219)
T PLN03071 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISA 154 (219)
T ss_pred hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCC
Confidence 4456789999999999999988988888888887654 368999999999986422111222 22222 34578999
Q ss_pred ccccCHHHHHHHHHhccCcc
Q 016700 333 ETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~~ 352 (384)
+++.+++++|++|+..+...
T Consensus 155 k~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 155 KSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999887543
No 126
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.75 E-value=1.1e-17 Score=151.71 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=107.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecce-EEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~-g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+++|.++||||||+.++...... ..|.. |..... ..+..+. . ...+.||||||... +...+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~~-t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~e~-------~~~l~ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP-KEYIP-TVFDNYSAQTAVDG----R--TVSLNLWDTAGQEE-------YDRLR 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-cCCCC-ceEeeeEEEEEECC----E--EEEEEEEECCCchh-------hhhhh
Confidence 58999999999999999999875431 12222 222111 1111111 1 12689999999854 33344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~ 321 (384)
..+++.||++|+|+|++++++++.+. .|..++..+. .+.|+++|+||+||....... ++..+.
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 45678999999999999999988886 5767776543 368999999999996532211 111122
Q ss_pred HHh---cCCcccccccccCHHHHHHHHHhccCc
Q 016700 322 ILK---IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 322 ~~~---~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
... ..+.++||+++.+++++|++++..+..
T Consensus 146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 222 346689999999999999999987643
No 127
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.75 E-value=1.8e-17 Score=144.55 Aligned_cols=158 Identities=17% Similarity=0.080 Sum_probs=106.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|+..... ..+..++.+.....+..+. ....+.+|||||..+. .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~-------~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDG------EDVQLNILDTAGQEDY-------AAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECC------EEEEEEEEECCChhhh-------hHHHH
Confidence 37999999999999999999975432 2344443322222222211 0126899999998543 22333
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-HHHHHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDRLQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-~e~~~~l~~~~~~~--~~~~~sa~ 333 (384)
..++.+|++++|+|++++.+++....++..+..... ..+.|+++|+||+|+... ....+...+....+ .+.++|+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence 456788999999999987777766666666654322 246999999999999752 11222233333333 45688999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.|++++++.+++.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998655
No 128
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=153.55 Aligned_cols=161 Identities=15% Similarity=0.050 Sum_probs=111.0
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|+..+......+....+.....+..... ...+.+|||||... +...
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~------~i~l~l~Dt~G~~~-------~~~~ 71 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK------PIKLQIWDTAGQES-------FRSI 71 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE------EEEEEEEeCCCcHH-------HHHH
Confidence 3468999999999999999999976543322222222222223332211 12588999999743 3344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~s 331 (384)
+..++..+|++|+|+|+++..+++.+..|+.++..+.. ...|+++|+||+|+..... ..++..+..+.. .+.+++
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 55677889999999999998888887777777665432 3689999999999965321 122222333333 456889
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.+++++|++++..+.
T Consensus 150 a~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 129
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.75 E-value=1.4e-17 Score=148.94 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=103.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+.++..... +..|..|........+..+. . ...+.||||||..+. ...+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~-------~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG----K--PVNLGLWDTAGQEDY-------DRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEECC----E--EEEEEEEECCCchhh-------hhhhh
Confidence 4799999999999999999987542 22232222211111122111 0 126889999998442 22334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~~ 322 (384)
.++..+|++|+|+|++++++++.+. .|...+.... .+.|+++|+||+|+....... ++..+..
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 4678899999999999988888874 5666666543 368999999999996432111 1122223
Q ss_pred Hhc---CCcccccccccCHHHHHHHHHhc
Q 016700 323 LKI---GCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 323 ~~~---~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+.+ .+.++|++++.+++++|+.++..
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 333 35689999999999999998753
No 130
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.3e-17 Score=149.80 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.++||||||++++...... ..|..|........+..+. . ...+.||||||.... .....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~----~--~~~l~iwDt~G~~~~-------~~~~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDE----Q--RIELSLWDTSGSPYY-------DNVRP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECC----E--EEEEEEEECCCchhh-------hhcch
Confidence 47999999999999999999876432 2333222211111222221 1 126899999998542 22223
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-------------HHHHHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------DRLQSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-------------e~~~~l~~~~ 322 (384)
.+++.||++|+|+|++++++++.+ ..|..++..+.+ +.|+++|+||+||.... -..++..+..
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 457889999999999999999985 788888887653 68999999999985310 0112223333
Q ss_pred HhcC---CcccccccccC-HHHHHHHHHhc
Q 016700 323 LKIG---CDKVTSETELS-SEDAVKSLSTE 348 (384)
Q Consensus 323 ~~~~---~~~~sa~t~~g-v~e~l~~l~~~ 348 (384)
+..+ +.++||+++.+ ++++|..+...
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 3443 56899999985 99999988763
No 131
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=1.3e-17 Score=147.40 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=107.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.||||||||++++.+... ...+..|+.......+.... ....+.+|||||+.+. .....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDG------RQCDLEILDTAGTEQF-------TAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC------EEEEEEEEeCCCcccc-------hhhhH
Confidence 4799999999999999999986643 22233333222222222221 1126789999998543 33334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e----~~~~l~~~~~~~~~~~~sa 332 (384)
.+++.++++++|+|++++++++....|..++.... ...+.|+++|+||+|+..... ....+.+.+....+.++||
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 45678999999999999888888877777766432 224699999999999865321 1222222222234678999
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
.++.+++++|++++..+.
T Consensus 147 ~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 147 RKRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987653
No 132
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=1.1e-17 Score=150.60 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=102.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||++++...... . +. +|.......++... ..+.+|||||... +...+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~-~~-~T~~~~~~~~~~~~--------~~~~l~D~~G~~~-------~~~~~ 78 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-T-TI-PTIGFNVETVEYKN--------LKFTMWDVGGQDK-------LRPLW 78 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cC-CccccceEEEEECC--------EEEEEEECCCCHh-------HHHHH
Confidence 368999999999999999999754321 1 21 23333333343322 2689999999843 44456
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-----c--CCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----I--GCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-----~--~~~ 328 (384)
..+++.||++|||+|+++.++++....++.++.. ...+.+.|+++|+||+|+..... .+++.+.+.. . .+.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEEE
Confidence 6778999999999999987666655444333321 11234689999999999865321 1223222211 1 123
Q ss_pred ccccccccCHHHHHHHHHhcc
Q 016700 329 KVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~ 349 (384)
++|+.++.|+++++++|++.+
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHH
Confidence 679999999999999998765
No 133
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=1.4e-17 Score=169.14 Aligned_cols=156 Identities=26% Similarity=0.298 Sum_probs=116.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~f 255 (384)
+|+|+|.||||||||+|+|++....+ .+++++|.+.....+.... ..+.+|||||+..... ..+.+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--------~~~~liDTpG~~~~~~~~~~~~~~~~ 72 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--------REFILIDTGGIEEDDDGLDKQIREQA 72 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--------eEEEEEECCCCCCcchhHHHHHHHHH
Confidence 48999999999999999999887644 8899999988887776543 2699999999853211 123345556
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---ccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~---~~~sa 332 (384)
..+++.||+++||+|+.+.....+. .+...+.. .++|+++|+||+|+....... ..+..+++ .++|+
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~~~~~----~~~~~lg~~~~~~vSa 142 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKEDAVA----AEFYSLGFGEPIPISA 142 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcccccH----HHHHhcCCCCeEEEeC
Confidence 7788999999999999876555443 34445554 368999999999987643322 22344554 47899
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.++.++++.+...+..
T Consensus 143 ~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CcCCChHHHHHHHHHhcCc
Confidence 9999999999999877644
No 134
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.75 E-value=1.8e-17 Score=149.68 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=107.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.++||||||++++...... ..|..|........+..+. . ...+.||||+|..+ +.....
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~~----~--~~~l~iwDtaG~e~-------~~~~~~ 71 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT----Q--RIELSLWDTSGSPY-------YDNVRP 71 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEECC----E--EEEEEEEECCCchh-------hHhhhh
Confidence 57999999999999999999876421 2332222211111222221 1 12689999999844 233334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-------------HHHHHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------DRLQSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-------------e~~~~l~~~~ 322 (384)
.+++.||++|+|+|++++.+++.+ ..|..++..+.+ +.|+++|+||+||.... -..++..+..
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 567899999999999999999986 788888887653 58999999999985310 0112233333
Q ss_pred Hhc---CCcccccccccC-HHHHHHHHHhc
Q 016700 323 LKI---GCDKVTSETELS-SEDAVKSLSTE 348 (384)
Q Consensus 323 ~~~---~~~~~sa~t~~g-v~e~l~~l~~~ 348 (384)
+.+ .+.++||+++.+ ++++|+.+...
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 333 456899999998 99999988763
No 135
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.1e-17 Score=168.18 Aligned_cols=154 Identities=25% Similarity=0.326 Sum_probs=113.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~ 254 (384)
++|+|+|.||||||||+|+|++.+.. +.+++++|.+...+.+.... ..+.+|||||+.+... ....+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~~ 73 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--------REFILIDTGGIEPDDDGFEKQIREQ 73 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--------cEEEEEECCCCCCcchhHHHHHHHH
Confidence 57999999999999999999988764 47899999988877776543 2799999999975221 11223444
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Ccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~---~~~~s 331 (384)
+..++..||++|||+|+++..+..+. .+.+.+.. .++|+++|+||+|+....+... .+..++ +.++|
T Consensus 74 ~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~D~~~~~~~~~----~~~~lg~~~~~~iS 143 (435)
T PRK00093 74 AELAIEEADVILFVVDGRAGLTPADE-EIAKILRK-----SNKPVILVVNKVDGPDEEADAY----EFYSLGLGEPYPIS 143 (435)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECccCccchhhHH----HHHhcCCCCCEEEE
Confidence 56778999999999999876554443 23344544 2689999999999765322222 223344 45789
Q ss_pred cccccCHHHHHHHHHhc
Q 016700 332 SETELSSEDAVKSLSTE 348 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~ 348 (384)
+.++.+++++++.+...
T Consensus 144 a~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 144 AEHGRGIGDLLDAILEE 160 (435)
T ss_pred eeCCCCHHHHHHHHHhh
Confidence 99999999999999873
No 136
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.75 E-value=1.4e-17 Score=147.41 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=103.7
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHH
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 258 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~ 258 (384)
|+|+|.+|||||||++++....... .+..+........+..+.. ...+.+|||||..+. ......+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE-DYVPTVFENYSADVEVDGK------PVELGLWDTAGQEDY-------DRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC-CCCCcEEeeeeEEEEECCE------EEEEEEEECCCCccc-------chhchhh
Confidence 5799999999999999999865322 2222222222222222210 126899999998543 2223345
Q ss_pred cccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHHHh
Q 016700 259 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEILK 324 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~~~~ 324 (384)
+..+|++|+|+|+++..+++.+. .|...+..+. .+.|+++|+||+|+....... ++..+..+.
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 78899999999999988887774 4777776654 369999999999986532211 111223333
Q ss_pred c---CCcccccccccCHHHHHHHHHhcc
Q 016700 325 I---GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 325 ~---~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
. .+.++|++++.+++++++.+...+
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 3 346889999999999999998765
No 137
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=1.6e-17 Score=156.98 Aligned_cols=158 Identities=9% Similarity=0.083 Sum_probs=109.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||++++...... ..|..|+.+.....+..... . ..+.||||+|..+. ......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~~----~--~~l~I~Dt~G~~~~-------~~~~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRGE----V--YQLDILDTSGNHPF-------PAMRRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECCE----E--EEEEEEECCCChhh-------hHHHHH
Confidence 7999999999999999999865432 23433333333333332211 1 26889999998432 222233
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-------CCCCCCEEEEEeCCCCCCh-HHHHHHHHHHHHh---cC
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-------DYLERPFIVVLNKIDLPEA-RDRLQSLTEEILK---IG 326 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-------~l~~~p~ivV~NK~Dl~~~-~e~~~~l~~~~~~---~~ 326 (384)
++..+|++|+|+|+++.++++.+..|.+++..+.. ...+.|+|+|+||+|+... ....+++.+.+.. ..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 46789999999999999888888888888865421 2346899999999999642 1223344444332 34
Q ss_pred CcccccccccCHHHHHHHHHhcc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+.++|+.++.+++++|++|+..+
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998855
No 138
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=2.8e-17 Score=148.16 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=107.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecc--eEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~--~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.+|+++|.++||||||++++...... ..|.. |.... ...+..+.. ...+.||||+|... +...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~-T~g~~~~~~~i~~~~~------~~~l~iwDt~G~~~-------~~~~ 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQ-TLGVNFMEKTISIRGT------EITFSIWDLGGQRE-------FINM 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCC-ccceEEEEEEEEECCE------EEEEEEEeCCCchh-------HHHh
Confidence 37999999999999999999876432 22222 22211 122322211 12689999999843 3334
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-----HH-HHHHHHHHHHhcC--
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-----RD-RLQSLTEEILKIG-- 326 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-----~e-~~~~l~~~~~~~~-- 326 (384)
+..++..||++++|+|++++.+++++..|..++..+.+ ...| ++|+||+|+... .+ ..+...+..+..+
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~ 142 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP 142 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE
Confidence 45568899999999999999888888888888876543 2356 688999998521 11 1222222233333
Q ss_pred CcccccccccCHHHHHHHHHhccCc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+.++||+++.+++++|+++++.+..
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999877643
No 139
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=3.1e-17 Score=144.89 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=104.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|...+.. ..++.+ .....-...... . ...+.+|||||..+ ....+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~-------~~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVTP----E--RVPTTIVDTSSRPQ-------DRANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeecC----C--eEEEEEEeCCCchh-------hhHHHhh
Confidence 7999999999999999999876532 223322 211111111111 1 12689999999853 2234556
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH------HHHHHHHHHhc-CCcc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------LQSLTEEILKI-GCDK 329 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~------~~~l~~~~~~~-~~~~ 329 (384)
++..+|++++|+|++++.+++.+. .|..++..+. .+.|+++|+||+|+.+..+. ...+.+.+... .+.+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVE 143 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEE
Confidence 678999999999999888877763 5666666543 26899999999999754321 11222233332 5668
Q ss_pred cccccccCHHHHHHHHHhcc
Q 016700 330 VTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~ 349 (384)
+|+.++.+++++++.+....
T Consensus 144 ~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 144 CSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred eccccccCHHHHHHHHHHHh
Confidence 99999999999999887654
No 140
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=1.8e-17 Score=142.85 Aligned_cols=151 Identities=25% Similarity=0.340 Sum_probs=100.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+|+|++|||||||+++|.+.+......| |.......+.... ..+.+|||||... +...+..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~--------~~~~~~D~~g~~~-------~~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN--------VTLKVWDLGGQPR-------FRSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC--------EEEEEEECCCCHh-------HHHHHHH
Confidence 489999999999999999998754433222 3223333332221 2689999999843 3445667
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 330 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~~~~ 330 (384)
++..+|++++|+|+++...+.....++..+... ....+.|+++|+||+|+..... .+.+.+.+. ...+.++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSI 141 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEE
Confidence 789999999999998765555444444443321 1234689999999999875432 122222221 1234578
Q ss_pred ccccccCHHHHHHHHHh
Q 016700 331 TSETELSSEDAVKSLST 347 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~ 347 (384)
++.++.++++++++|.+
T Consensus 142 Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 142 SCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeccCCChHHHHHHHhh
Confidence 99999999999999864
No 141
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.74 E-value=2.8e-17 Score=149.76 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=108.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
||+++|.+|||||||+++|...... ..+..|+.......+..... ...+.||||||..+. ......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~D~~G~~~~-------~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGV------SLTLDILDTSGSYSF-------PAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCE------EEEEEEEECCCchhh-------hHHHHH
Confidence 5899999999999999999976532 23333433222222322210 126889999998542 222334
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-HHH-HHHHHHHHH-h--cCCccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDR-LQSLTEEIL-K--IGCDKVTS 332 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-~e~-~~~l~~~~~-~--~~~~~~sa 332 (384)
++..||++|+|+|+++..+++....|+.++..+... .+.|+++|+||+|+... ... .+...+... . ..+.++++
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 678899999999999988888888887777765432 36999999999998652 111 111122221 2 34568999
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.|+++++++|...+..
T Consensus 146 ~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 146 KDNENVLEVFKELLRQANL 164 (198)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999987653
No 142
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.74 E-value=2.5e-17 Score=145.89 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=103.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|+|||||++++...+.. ..+..|+.+.....+..... ...+.+|||||..+... ....
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~~-------~~~~ 67 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGK------QYLLGLYDTAGQEDYDR-------LRPL 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCE------EEEEEEEeCCCcccccc-------cccc
Confidence 7999999999999999999876532 22333332222222322211 12578999999855311 1223
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHHH
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEIL 323 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~~~ 323 (384)
++..+|++++|+|++++.+++.+. .|...+..+. .+.|+++|+||+|+....... ++.....+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 467899999999999988887764 4666666542 469999999999986432211 12222333
Q ss_pred hcC---CcccccccccCHHHHHHHHHhcc
Q 016700 324 KIG---CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 324 ~~~---~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.++ +.++|+.++.|++++|+.++..+
T Consensus 145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 145 EIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 343 56899999999999999988654
No 143
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.73 E-value=1.9e-17 Score=146.48 Aligned_cols=148 Identities=23% Similarity=0.272 Sum_probs=96.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
.|+++|.+|||||||+++|.+.... ..+.. |.......+... ...+.+|||||... +...+..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~p-t~g~~~~~i~~~--------~~~l~i~Dt~G~~~-------~~~~~~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVP-TTGFNSVAIPTQ--------DAIMELLEIGGSQN-------LRKYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc-ccccc-cCCcceEEEeeC--------CeEEEEEECCCCcc-------hhHHHHH
Confidence 3799999999999999999976432 22221 222222223222 13789999999843 4455667
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH-----H-HhcC--Ccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-----I-LKIG--CDK 329 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~-----~-~~~~--~~~ 329 (384)
+++.||++|||+|+++...+...+.++.++.... .+.|+++|+||+|+..... .+++.+. + .+.+ +.+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCceEEEE
Confidence 8999999999999998766666655555554322 4799999999999875432 2222111 1 2222 233
Q ss_pred c------ccccccCHHHHHHHHH
Q 016700 330 V------TSETELSSEDAVKSLS 346 (384)
Q Consensus 330 ~------sa~t~~gv~e~l~~l~ 346 (384)
+ |+.+.++++++|+.+.
T Consensus 140 ~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 140 TSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eeecCCCChhHHHHHHHHHHHHh
Confidence 4 4445999999998764
No 144
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=2.8e-17 Score=145.42 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=101.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|+|+|++|||||||+++|.+..... ...|...+...+.... ..+.+|||||... +...+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~--------~~~~~~D~~G~~~-------~~~~~ 75 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDG--------FKLNVWDIGGQRA-------IRPYW 75 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECC--------EEEEEEECCCCHH-------HHHHH
Confidence 4679999999999999999999864321 1112222222333322 2689999999743 44556
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~-------~~~ 328 (384)
..+++.||++++|+|+++...+.....++..+.... .....|+++++||+|+....+ .+++.+.+... .+.
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~ 153 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQ 153 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEE
Confidence 677899999999999997655554444433333221 123699999999999875322 23333333211 234
Q ss_pred ccccccccCHHHHHHHHHh
Q 016700 329 KVTSETELSSEDAVKSLST 347 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~ 347 (384)
++|+.++.|+++++++|++
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 7899999999999999974
No 145
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.73 E-value=3.2e-17 Score=145.31 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=103.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++.+.... ..|..|........+..... ...+.+|||||+.+. .....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGK------QVELALWDTAGQEDY-------DRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCE------EEEEEEEeCCCchhh-------hhccc
Confidence 47999999999999999999976432 22332322222233332211 126899999998542 11122
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~~ 322 (384)
.++..+|++++|+|+++.++++.+. .|..++..+. .+.|+++|+||+|+....... ....+..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 3568899999999999887777764 4666666543 368999999999986532211 1111222
Q ss_pred Hh---cCCcccccccccCHHHHHHHHHhcc
Q 016700 323 LK---IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 323 ~~---~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.. ..+.++|+.++.+++++|++|+..+
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 22 2456899999999999999998653
No 146
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.73 E-value=3.9e-17 Score=151.82 Aligned_cols=158 Identities=17% Similarity=0.140 Sum_probs=104.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee-ecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~-~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+++|.+|||||||++++.........|+.+.- +.....+..+.. ...+.||||||... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~------~~~l~i~Dt~G~~~------~~~~~- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGE------ESTLVVIDHWEQEM------WTEDS- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCE------EEEEEEEeCCCcch------HHHhH-
Confidence 37999999999999999999765443222222110 111122222110 12689999999851 11222
Q ss_pred HHHcc-cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCcccc
Q 016700 256 LRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVT 331 (384)
Q Consensus 256 l~~i~-~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-~~l~~~~~~--~~~~~~s 331 (384)
++. .+|++++|+|++++.+++....|+.++..+.. ..+.|+++|+||+|+....+.. ++..+.... ..+.++|
T Consensus 68 --~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 144 (221)
T cd04148 68 --CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETS 144 (221)
T ss_pred --HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEec
Confidence 233 79999999999998888888778887776532 2469999999999986543211 111222222 3456889
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.++++++++++..+.
T Consensus 145 A~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987663
No 147
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.73 E-value=5.8e-17 Score=142.78 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=103.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+.++...... ..++ +|.......+..+.. ...+.||||+|... ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~~~~~~~~~i~~~~~------~~~l~i~D~~g~~~------------~~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QLES-PEGGRFKKEVLVDGQ------SHLLLIRDEGGAPD------------AQ 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCCC-CCccceEEEEEECCE------EEEEEEEECCCCCc------------hh
Confidence 7999999999999999998765321 1122 121111122222211 12589999999842 13
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--hHH----HHHHHHHHHHhcCCcccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARD----RLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~--~~e----~~~~l~~~~~~~~~~~~s 331 (384)
+++.+|++++|+|++++++++....|+.++..+.. ..+.|+++|+||+|+.. .++ ..+.+.+....+.+.++|
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 140 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC 140 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence 45679999999999999999998888888876642 24589999999999842 121 222333333335677999
Q ss_pred cccccCHHHHHHHHHhc
Q 016700 332 SETELSSEDAVKSLSTE 348 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~ 348 (384)
|+++.+++++|+.++..
T Consensus 141 Ak~~~~i~~~f~~~~~~ 157 (158)
T cd04103 141 ATYGLNVERVFQEAAQK 157 (158)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999998854
No 148
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=159.23 Aligned_cols=113 Identities=40% Similarity=0.695 Sum_probs=94.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC---------ccccCCceEEEeCCCCcccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------AEKYSSEATLADLPGLIEGAHL 247 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~---------~~~~~~~i~i~DtPG~~~~a~~ 247 (384)
.+++|||.||+|||||+|+|+......++|||+|++|+.+.+...+..- -......+++.|++|+..+||.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 4699999999999999999999998899999999999999887543100 0001124899999999999999
Q ss_pred ccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHHHh
Q 016700 248 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRM 289 (384)
Q Consensus 248 ~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL~~ 289 (384)
++||+..||.||+.+|++++|+++.. .+|..+++.+.+||..
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~l 152 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRL 152 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999875 3677777777777654
No 149
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=8.2e-17 Score=144.30 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=99.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC--CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc---cc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---GK 249 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~--~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~---~~ 249 (384)
..++|+|+|.+|+|||||+|+|++.. ..+++.+++|.++....+. ..+.+|||||+...... ..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHH
Confidence 45689999999999999999999875 3446778888776554331 26899999998543211 01
Q ss_pred c---hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHH
Q 016700 250 G---LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL 323 (384)
Q Consensus 250 g---l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~ 323 (384)
. +...+++....++++++|+|++.+....+.. +...+.. .++|+++|+||+|+....+ ..+++++.+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~ 159 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALK 159 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHh
Confidence 1 1223444445678999999998765555443 3344443 3689999999999976432 3455555665
Q ss_pred hc----CCcccccccccCH
Q 016700 324 KI----GCDKVTSETELSS 338 (384)
Q Consensus 324 ~~----~~~~~sa~t~~gv 338 (384)
.. .+.++|+.+++|+
T Consensus 160 ~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 160 KDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hccCCCceEEEECCCCCCC
Confidence 53 4567888888775
No 150
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.2e-17 Score=146.37 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=114.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC------CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~------~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
-.||+|+|..+||||||+-++...+. .|+ ..|-|. ++..+.. ..+|.||||+|+....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIG-aaF~tk-----tv~~~~~------~ikfeIWDTAGQERy~---- 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIG-AAFLTK-----TVTVDDN------TIKFEIWDTAGQERYH---- 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccc-cEEEEE-----EEEeCCc------EEEEEEEEcCCccccc----
Confidence 35899999999999999999986542 221 112222 1221111 1378999999996542
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--C
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--G 326 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~ 326 (384)
++.. -|++.|+++|+|+|+++.+++...+.|..+|+...+ .+.-+.+|+||+||...++ ..++........ -
T Consensus 69 slap---MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll 143 (200)
T KOG0092|consen 69 SLAP---MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQGLL 143 (200)
T ss_pred cccc---ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE
Confidence 2333 357899999999999999999999999999997544 3455778999999987332 233444444444 4
Q ss_pred CcccccccccCHHHHHHHHHhccCccccc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGGEADLL 355 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~~~~~~ 355 (384)
+.++|++|+.+++++|..|++.+......
T Consensus 144 ~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 144 FFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred EEEEecccccCHHHHHHHHHHhccCcccc
Confidence 66899999999999999999998765543
No 151
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.7e-17 Score=138.45 Aligned_cols=162 Identities=18% Similarity=0.134 Sum_probs=125.4
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
.|.+.+|+|||..|+|||.|+.+++..-... -.+.|+ +.-+.+++.... ..+++||||+|+ +.
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfpp--gqgatigvdfmiktvev~ge------kiklqiwdtagq-------er 68 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEVNGE------KIKLQIWDTAGQ-------ER 68 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCC--CCCceeeeeEEEEEEEECCe------EEEEEEeeccch-------HH
Confidence 5678999999999999999999999653222 122333 333334433321 237999999998 55
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCC
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGC 327 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~---~~~~ 327 (384)
++.....|++.|+++++|+|++...+++.+..|+.|++.|.. .+.--|+|.||+|+.+.+|.-+.+-+.+. .+.+
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 777788899999999999999999999999999999999964 23557899999999887676666665554 3457
Q ss_pred cccccccccCHHHHHHHHHhccCc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.+++++..++++.+|..++.++..
T Consensus 147 letsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHHHH
Confidence 789999999999999999887654
No 152
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.72 E-value=5.2e-17 Score=144.92 Aligned_cols=160 Identities=14% Similarity=0.055 Sum_probs=108.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.||||||||+++|+..... ..+..|+.......+.... ....+.+|||||+.+ +...+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~-------~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKG------QDYHLEIVDTAGQDE-------YSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECC------EEEEEEEEECCChHh-------hHHHHH
Confidence 47999999999999999999976532 2233333322233333221 112578999999854 233344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa~ 333 (384)
.++..++++++|+|+++..+++....++..+..+. ...+.|+++|+||+|+....+. .+........+ .+.++|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 56778999999999999888877777766665432 2246899999999998642211 11222223333 35678999
Q ss_pred cccCHHHHHHHHHhccCc
Q 016700 334 TELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~~ 351 (384)
++.++.+++.++.+.+..
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 147 ENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 153
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.72 E-value=9.1e-17 Score=149.52 Aligned_cols=156 Identities=13% Similarity=0.112 Sum_probs=103.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|||.++||||||+++++..... ..|..|........+..+.. ...+.||||+|..+. .....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~~~------~v~L~iwDt~G~e~~-------~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEIDKR------RIELNMWDTSGSSYY-------DNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEECCE------EEEEEEEeCCCcHHH-------HHHhH
Confidence 47999999999999999999975432 22332322211112222211 126899999998542 22233
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------------HHHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------------~~~l~~~~ 322 (384)
.++..+|++|+|+|++++++++.+ ..|..++..+. .+.|+++|+||+||...... .++-.+..
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 457899999999999999888887 45666666544 36899999999999642111 11122222
Q ss_pred Hhc---CCccccccccc-CHHHHHHHHHhcc
Q 016700 323 LKI---GCDKVTSETEL-SSEDAVKSLSTEG 349 (384)
Q Consensus 323 ~~~---~~~~~sa~t~~-gv~e~l~~l~~~~ 349 (384)
+.+ .+.++|+.++. +++++|..+....
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 333 45689999887 5999998887754
No 154
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1.5e-16 Score=144.15 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=104.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCC-------CCccCCCCceeecceEEecCCCCCC------ccccCCceEEEeCCCCcc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIE 243 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~-------~~ia~~~~tT~~p~~g~v~~~~~~~------~~~~~~~i~i~DtPG~~~ 243 (384)
.+|+++|.+|+|||||+++|+... ......+.+|.+.....+....... .......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999999731 1123345677766554444321000 000123789999999832
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTE 320 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~ 320 (384)
+...+...+..+|++++|+|+++....+..+.+. .... .+.|+++|+||+|+....+ ..+++.+
T Consensus 81 -------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 81 -------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 4455556677899999999998755444433332 2222 2579999999999974322 2333333
Q ss_pred HHH---------hcCCcccccccccCHHHHHHHHHhcc
Q 016700 321 EIL---------KIGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 321 ~~~---------~~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+. ...+.++|+.++.|++++++.|.+.+
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 321 12356789999999999999988665
No 155
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.72 E-value=1e-16 Score=141.10 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=99.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.+......+ +..+.....+.... ....+.+|||||+.+.. ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~l~~~D~~g~~~~~-------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDG------KQVNLGLWDTAGQEEYD-------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECC------EEEEEEEEeCCCccccc-------ccch
Confidence 3799999999999999999998764221111 11111111111111 01268999999986531 1112
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH------------HHHHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------------LQSLTEEIL 323 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~------------~~~l~~~~~ 323 (384)
..++.+|++++|+|++++.++... ..|...+..+.+ ..|+++|+||+|+...... .+...+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 335789999999999986665544 335555655442 7999999999998765432 122223333
Q ss_pred hc---CCcccccccccCHHHHHHHHHh
Q 016700 324 KI---GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 324 ~~---~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
.. .+.++|+.++.+++++++.+.+
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 33 4568899999999999998864
No 156
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.72 E-value=7.4e-17 Score=143.37 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=102.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|+|||||+.++..... ...|+.|+.+.....+..... ...+.+|||||+.+. ...+.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGK------PVRLQLCDTAGQDEF-------DKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCE------EEEEEEEECCCChhh-------ccccc
Confidence 3799999999999999999986542 334554443322222222210 126889999998543 22222
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-------------HHHHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-------------RLQSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-------------~~~~l~~~~ 322 (384)
.+++.+|++|+|+|++++.+++.. ..|...+.... .+.|+++|+||+|+..... ..++.....
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 356889999999999998888776 35666666432 3589999999999864321 011122222
Q ss_pred Hhc---CCcccccccccCHHHHHHHHH
Q 016700 323 LKI---GCDKVTSETELSSEDAVKSLS 346 (384)
Q Consensus 323 ~~~---~~~~~sa~t~~gv~e~l~~l~ 346 (384)
+.. .+.++|+.++.+++++++.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 222 456899999999999998865
No 157
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=5.1e-17 Score=174.82 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=116.4
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc-cccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HLGK 249 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a-~~~~ 249 (384)
.-..+++|+|+|.||||||||+|+|++.+..+ .++|++|.+...+...... ..+.+|||||+.... ....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~ 342 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--------TDFKLVDTGGWEADVEGIDS 342 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--------EEEEEEeCCCcCCCCccHHH
Confidence 34456889999999999999999999887644 8899999887766654432 268999999986421 1122
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--- 326 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--- 326 (384)
.+......+++.||++|||+|+++.....+ ..+.+.|+. .++|+++|+||+|+....... ..+..++
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~----~~~~~lg~~~ 412 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEYDA----AEFWKLGLGE 412 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchhhH----HHHHHcCCCC
Confidence 344455667899999999999987543333 234555553 469999999999986532221 2222233
Q ss_pred CcccccccccCHHHHHHHHHhccCc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..++|+.++.|+.++++++++.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 3368999999999999999987643
No 158
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.7e-16 Score=141.02 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=118.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.||+++|..+|||||||+++.-...--...+..-++-...++.+.+. ..++++|||+|+ +.+....-
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~------~vrLQlWDTAGQ-------ERFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR------TVRLQLWDTAGQ-------ERFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc------EEEEEEEecccH-------HHHhhhhh
Confidence 79999999999999999999865321111111111222223332221 237999999998 55677778
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-HHHHHhcC--Ccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILKIG--CDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l-~~~~~~~~--~~~~sa~ 333 (384)
.|++.+.++|+|+|+++..++++...|++.+...+.. .+.-+++|+||.||.+.++...+- ....++++ +.+++++
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak 168 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAK 168 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEeccc
Confidence 8999999999999999999999999999999876531 235688999999999865432222 22334444 5578999
Q ss_pred cccCHHHHHHHHHhccCcccc
Q 016700 334 TELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~~~~~ 354 (384)
++.++.++|+.++..+...+.
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCCHHHHHHHHHHhccCccc
Confidence 999999999999988865433
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=3.2e-16 Score=139.78 Aligned_cols=151 Identities=20% Similarity=0.225 Sum_probs=103.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC----------------CCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~----------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
+|+++|.+|||||||+|+|++....... ..++|.......+... ...+.+|||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCc
Confidence 4899999999999999999987543311 1233444443333332 137899999998
Q ss_pred ccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHH
Q 016700 242 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL 318 (384)
Q Consensus 242 ~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l 318 (384)
.+ +...+..++..+|++++|+|+++........ +...+.. .+.|+++|+||+|+.... ...+.+
T Consensus 73 ~~-------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~ 139 (189)
T cd00881 73 ED-------FSSEVIRGLSVSDGAILVVDANEGVQPQTRE-HLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREI 139 (189)
T ss_pred HH-------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHH-HHHHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHH
Confidence 53 3445667788999999999998765444333 2233332 369999999999997532 223334
Q ss_pred HHHHHh----------------cCCcccccccccCHHHHHHHHHhcc
Q 016700 319 TEEILK----------------IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 319 ~~~~~~----------------~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.+.. ..+.++|+..+.|+++++++|...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 444433 2334789999999999999998765
No 160
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.71 E-value=3.1e-16 Score=141.70 Aligned_cols=159 Identities=21% Similarity=0.231 Sum_probs=108.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC--CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc---c-
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---G- 248 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~--~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~---~- 248 (384)
..++|+|+|.+|||||||+++|++.+ ..+++.+++|.......+. .++.||||||+...... .
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN-----------DKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC-----------CeEEEeCCCCCCCcCCCchHHH
Confidence 56789999999999999999999864 3456677777765543321 27999999997542110 1
Q ss_pred --cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHH
Q 016700 249 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL 323 (384)
Q Consensus 249 --~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~---~~~l~~~~~ 323 (384)
..+...++++.+.++++++|+|++.+....+. .+...+.. .+.|+++|+||+|+....+. .+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~ 165 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALK 165 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 11223344555566889999998875544332 23333432 35899999999999764332 233444444
Q ss_pred h--cCCcccccccccCHHHHHHHHHhccC
Q 016700 324 K--IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 324 ~--~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
. ..+.++++.++.+++++++.|.+.+.
T Consensus 166 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 166 FGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred hcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3 45668899999999999999987653
No 161
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=1.2e-16 Score=145.79 Aligned_cols=157 Identities=16% Similarity=0.084 Sum_probs=100.1
Q ss_pred ceEEEEecCCCcHHHHHH-HHHcCCCC----ccCCCCcee--ecceEEecC----CCCCCccccCCceEEEeCCCCcccc
Q 016700 177 ADVGLVGLPNAGKSTLLA-AITHAKPD----IADYPFTTL--MPNLGRLDG----DPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln-~L~~~~~~----ia~~~~tT~--~p~~g~v~~----~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
.+|+++|.++||||||+. ++.+.... ...|..|.- +.....+.. ....+.. ...+.||||+|..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~--~v~l~iwDTaG~~~~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGV--SVSLRLWDTFGDHDK- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCE--EEEEEEEeCCCChhh-
Confidence 589999999999999996 55543211 122222220 100000000 0000111 137899999998531
Q ss_pred ccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-------------
Q 016700 246 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEA------------- 311 (384)
Q Consensus 246 ~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~------------- 311 (384)
+. ..+++.||++|+|+|++++.+++.+. .|..++..+. .+.|+++|+||+||...
T Consensus 80 -----~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 80 -----DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred -----hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhcccccc
Confidence 11 13578999999999999999998886 5778887654 36899999999998631
Q ss_pred ------HH-HHHHHHHHHHhc--CCcccccccccCHHHHHHHHHh
Q 016700 312 ------RD-RLQSLTEEILKI--GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 312 ------~e-~~~~l~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
.. ..++..+..+.+ .+.++||+++.+++++|+.++.
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00 112222333333 4668999999999999999875
No 162
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=1.3e-16 Score=171.91 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=112.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc--cchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~--~gl~~~ 254 (384)
.+|+++|.||||||||+|+|++.+..++++|++|.+...+.+.... .++.++||||+.+..... ..+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--------~~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--------HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--------eEEEEEECCCccccccccccccHHHH
Confidence 4799999999999999999999988889999999999988886543 279999999997643211 122222
Q ss_pred HHH-H--cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Ccc
Q 016700 255 FLR-H--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDK 329 (384)
Q Consensus 255 fl~-~--i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--~~~ 329 (384)
..+ + .+.+|++++|+|+++.+.. ..+..++.+ .++|+++|+||+|+.+.......+.+.-+.++ +.+
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNLERN---LYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIP 147 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEE
Confidence 211 2 2579999999999874332 224444543 36999999999998744332222222223344 457
Q ss_pred cccccccCHHHHHHHHHhcc
Q 016700 330 VTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~ 349 (384)
+++.++.|++++.+.+.+..
T Consensus 148 iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEeecCCCHHHHHHHHHHhh
Confidence 89999999999998887653
No 163
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=7.4e-17 Score=138.38 Aligned_cols=137 Identities=21% Similarity=0.224 Sum_probs=90.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+++|.+.... +.. |. .+. + ...+|||||.... ...+......
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~---------~--~~~~iDt~G~~~~---~~~~~~~~~~ 58 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVE---------Y--NDGAIDTPGEYVE---NRRLYSALIV 58 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEE---------E--cCeeecCchhhhh---hHHHHHHHHH
Confidence 7999999999999999999977532 111 11 111 1 1268999997311 0111222234
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc---CCccccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTSET 334 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~---~~~~~sa~t 334 (384)
.++.||++++|+|++++.+.... .|.+. ...|+++|+||+|+.......+...+.++.. .+.++|+++
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~-~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP-GFASI--------FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh-hHHHh--------ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 57899999999999987766542 22221 1359999999999865322233333434443 345789999
Q ss_pred ccCHHHHHHHHH
Q 016700 335 ELSSEDAVKSLS 346 (384)
Q Consensus 335 ~~gv~e~l~~l~ 346 (384)
+.++++++++++
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999875
No 164
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=8.1e-17 Score=166.60 Aligned_cols=158 Identities=26% Similarity=0.362 Sum_probs=117.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc--ccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE--GAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~--~a~~~~gl~~~ 254 (384)
.+|+++|.||+|||||+|+|++.+..+++||+.|.+...|.+.+.. ..+.++|+||.-. ..++.+.+.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--------~~i~ivDLPG~YSL~~~S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--------HEIEIVDLPGTYSLTAYSEDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--------ceEEEEeCCCcCCCCCCCchHHHHHH
Confidence 3599999999999999999999999999999999999999998764 3799999999865 23445556666
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Cccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--~~~~sa 332 (384)
|+.. ++.|+++.|+|+++-+. .+....+.++ .++|+++++|++|..+.+-..-...+.-+.+| +.++++
T Consensus 76 ~ll~-~~~D~ivnVvDAtnLeR--nLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA 146 (653)
T COG0370 76 FLLE-GKPDLIVNVVDATNLER--NLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVA 146 (653)
T ss_pred HHhc-CCCCEEEEEcccchHHH--HHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEe
Confidence 6542 66899999999997433 2222223333 46999999999998654221111222223344 558899
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.|++++++.+.+....
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999998875543
No 165
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.71 E-value=4.9e-17 Score=160.39 Aligned_cols=115 Identities=36% Similarity=0.620 Sum_probs=96.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCC--------Cc-cccCCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~--------~~-~~~~~~i~i~DtPG~~~~a~ 246 (384)
.+++|||+||+|||||+|+|++..+ .+++|||||++|+.|++...+.. .. ......+.++|+||++++++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999999 88999999999999998764310 00 00112589999999999999
Q ss_pred cccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHHHhcC
Q 016700 247 LGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN 291 (384)
Q Consensus 247 ~~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL~~~~ 291 (384)
.+++++..|+.|++.||++++|+|+.+ .++.+++..+..||..++
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d 137 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKAD 137 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999864 256778888888877664
No 166
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=2.8e-16 Score=134.31 Aligned_cols=155 Identities=24% Similarity=0.166 Sum_probs=101.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
++|+++|.+|+|||||+++|.........++.+|.+.....+..... ...+.+|||||+.+. ...+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~~-------~~~~~ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK------TYKFNLLDTAGQEDY-------RAIRR 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE------EEEEEEEECCCcccc-------hHHHH
Confidence 58999999999999999999998844466677777666554543321 126889999997543 12222
Q ss_pred HHcccCCeEEEEeeCCCC-CCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~-~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~~~~~~~~~~sa 332 (384)
.....++.+++++|.... ....... .+...+..+.. .+.|+++|+||+|+.... +........+....+.++++
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeec
Confidence 334556777777776654 3333222 33344443332 168999999999997632 22222223333345678899
Q ss_pred ccccCHHHHHHHHH
Q 016700 333 ETELSSEDAVKSLS 346 (384)
Q Consensus 333 ~t~~gv~e~l~~l~ 346 (384)
..+.+++++++.|-
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999998863
No 167
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=3.1e-16 Score=133.98 Aligned_cols=155 Identities=29% Similarity=0.330 Sum_probs=109.6
Q ss_pred EEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHHc
Q 016700 181 LVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 259 (384)
Q Consensus 181 lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i 259 (384)
|+|++|+|||||+++|++.... +.+++.+|.......+.... ...+.+|||||+.+...........+...+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence 5899999999999999987765 57778888777766654331 137999999999876554443334556677
Q ss_pred ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH---H---HHHHhcCCcccccc
Q 016700 260 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL---T---EEILKIGCDKVTSE 333 (384)
Q Consensus 260 ~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l---~---~~~~~~~~~~~sa~ 333 (384)
..+|++++|+|++......... +...... ...|+++|+||+|+....+..... . .......+.++++.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence 8899999999999876655544 2223322 468999999999998654332221 1 11122345577889
Q ss_pred cccCHHHHHHHHHhc
Q 016700 334 TELSSEDAVKSLSTE 348 (384)
Q Consensus 334 t~~gv~e~l~~l~~~ 348 (384)
++.+++++++++...
T Consensus 148 ~~~~v~~l~~~l~~~ 162 (163)
T cd00880 148 TGEGIDELREALIEA 162 (163)
T ss_pred ccCCHHHHHHHHHhh
Confidence 999999999998753
No 168
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.70 E-value=6.4e-17 Score=144.94 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=107.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.-.+|+++|++|||||||+++|...+.. . ...|...+...+.+.. ..+.+||++|.. .+...
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~--~~pT~g~~~~~i~~~~--------~~~~~~d~gG~~-------~~~~~ 74 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-E--TIPTIGFNIEEIKYKG--------YSLTIWDLGGQE-------SFRPL 74 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-E--EEEESSEEEEEEEETT--------EEEEEEEESSSG-------GGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-c--cCcccccccceeeeCc--------EEEEEEeccccc-------ccccc
Confidence 3468999999999999999999865321 1 2224444444554432 279999999973 34556
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH--Hhc------C
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKI------G 326 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~--~~~------~ 326 (384)
|..++..+|++|||||+++.+.+.+....+.++.. .+.+.+.|++|++||+|+..... .+++.+.+ ..+ .
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEE
T ss_pred ceeeccccceeEEEEecccceeecccccchhhhcc-hhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceE
Confidence 77788999999999999987665555444444432 22345799999999999876432 23343333 122 2
Q ss_pred CcccccccccCHHHHHHHHHhc
Q 016700 327 CDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+..+++.++.|+.+.++||.+.
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhc
Confidence 4578999999999999999864
No 169
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.70 E-value=2.4e-16 Score=136.21 Aligned_cols=157 Identities=21% Similarity=0.230 Sum_probs=113.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|.++|+.||||||++++|.+..+.. .-.|+--++..+.+.. ..+++||+.|+ ..+...|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~~~--------~~L~iwDvGGq-------~~lr~~W 77 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEYKG--------YTLNIWDVGGQ-------KTLRSYW 77 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEecc--------eEEEEEEcCCc-------chhHHHH
Confidence 4689999999999999999999875321 1113333333444433 27999999998 4578888
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh---HH--HHHHHHHHHHhcC--Cc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RD--RLQSLTEEILKIG--CD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~---~e--~~~~l~~~~~~~~--~~ 328 (384)
..|++.+|++|||+|.+++..+++....+.++-. ...+...|+++++||.|+..+ ++ .+-.+.+.++... +.
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 9999999999999999987776665544444443 445678999999999999843 11 1223333334444 44
Q ss_pred ccccccccCHHHHHHHHHhccCc
Q 016700 329 KVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.|++-+++++.+.++||+..+..
T Consensus 157 ~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 157 KCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEeccccccHHHHHHHHHHHHHH
Confidence 78999999999999999987643
No 170
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.70 E-value=6.5e-17 Score=139.25 Aligned_cols=164 Identities=18% Similarity=0.109 Sum_probs=121.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
...+|.|||.+|+||||||-+++.... .+...+|+ +..+.++..+.. .-++.||||+|+ +.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f--d~~~~~tIGvDFkvk~m~vdg~------~~KlaiWDTAGq-------ErFR 74 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF--DDLHPTTIGVDFKVKVMQVDGK------RLKLAIWDTAGQ-------ERFR 74 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc--CccCCceeeeeEEEEEEEEcCc------eEEEEEEeccch-------Hhhh
Confidence 457899999999999999999987642 22333444 334444544432 237999999998 4466
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Ccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDK 329 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~~--~~~ 329 (384)
.....+++.|..+|+|+|++.++++..+..|.+||..|... .+.-.++|.||+|....+.. -++-.+..+++. +.+
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE 153 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIE 153 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEE
Confidence 66678899999999999999999999999999999999742 35667899999997643221 122233334443 568
Q ss_pred cccccccCHHHHHHHHHhccCcccc
Q 016700 330 VTSETELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~~~~ 354 (384)
++|++.++++..|++|..++.+...
T Consensus 154 ~SAkt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred cchhhhccHHHHHHHHHHHHhcCcc
Confidence 9999999999999999998876443
No 171
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.2e-17 Score=163.19 Aligned_cols=170 Identities=22% Similarity=0.235 Sum_probs=119.2
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc-c--cc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-A--HL 247 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~-a--~~ 247 (384)
+++..++|+|+|.||||||||+|+|++.+..| ++.|+||.+.....++..+ .++.+.||+|+.+. . .+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--------~~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--------VPVRLSDTAGIREESNDGIE 335 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--------eEEEEEeccccccccCChhH
Confidence 66788999999999999999999999998877 9999999999888887654 38999999999982 2 13
Q ss_pred ccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHH--HHHHHHH----hcCCCCCCCCEEEEEeCCCCCChHHHHHH-HHH
Q 016700 248 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR--TVKEELR----MYNPDYLERPFIVVLNKIDLPEARDRLQS-LTE 320 (384)
Q Consensus 248 ~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~--~l~~eL~----~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~-l~~ 320 (384)
..++.+++ +.+++||++++|+|+......++.. ..++... .+.......|++++.||+|+...-..+.. ...
T Consensus 336 ~~gI~rA~-k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~ 414 (531)
T KOG1191|consen 336 ALGIERAR-KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV 414 (531)
T ss_pred HHhHHHHH-HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee
Confidence 34556654 6689999999999994433333322 2222222 12233346899999999998764111111 111
Q ss_pred HHH-----hcCCc-ccccccccCHHHHHHHHHhccC
Q 016700 321 EIL-----KIGCD-KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 321 ~~~-----~~~~~-~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
... .+... ++++.++++.+.+.+.+.+...
T Consensus 415 ~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 415 YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 111 12222 4678899999999988877653
No 172
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.6e-17 Score=145.28 Aligned_cols=164 Identities=17% Similarity=0.066 Sum_probs=120.0
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
++..+.||+++|.+++|||-||.+++..+..+...+..-++.....+..+.. ..+.+||||+|+. .+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k------~vkaqIWDTAGQE-------Ry 76 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGK------TVKAQIWDTAGQE-------RY 76 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCc------EEEEeeecccchh-------hh
Confidence 5567889999999999999999999987755543332222222222322221 1268999999994 34
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH---HhcCCc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCD 328 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~---~~~~~~ 328 (384)
......|++.|..+++|+|++...+++.+..|+.||+.+.. .+.++++|+||+||...+....+-.+.+ +.+.+.
T Consensus 77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 44456678999999999999999999999999999998764 4799999999999976332222222222 336677
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+-...+++++|..+...+.
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I~ 176 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEIY 176 (222)
T ss_pred EecccccccHHHHHHHHHHHHH
Confidence 9999999999999987776553
No 173
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-16 Score=140.87 Aligned_cols=158 Identities=18% Similarity=0.113 Sum_probs=116.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEE--ecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~--v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
..|+.++|..+||||+||.+++..... ..+. .|+-...|. +..+. ..-+++||||+|+ +.+..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~-~~hd-~TiGvefg~r~~~id~------k~IKlqiwDtaGq-------e~frs 70 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQ-PVHD-LTIGVEFGARMVTIDG------KQIKLQIWDTAGQ-------ESFRS 70 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcc-cccc-ceeeeeeceeEEEEcC------ceEEEEEEecCCc-------HHHHH
Confidence 468999999999999999999976421 1111 344333222 22221 1237999999998 44566
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-HHHHHHHhcC--Cccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEILKIG--CDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~-~l~~~~~~~~--~~~~ 330 (384)
....+++.|..+|+|+|++..+++..+..|+.+++.+.. .+..+++++||+||...++.-+ +-..+.++.+ +.++
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmET 148 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMET 148 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehh
Confidence 667788999999999999999999999999999998752 4678999999999986544322 2233334444 4588
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+++.++++|+|...+..+.
T Consensus 149 Sakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHH
Confidence 99999999999998887653
No 174
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=1.6e-16 Score=149.97 Aligned_cols=168 Identities=24% Similarity=0.229 Sum_probs=122.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc-----c
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-----G 248 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~-----~ 248 (384)
....|++||.||||||||.|.+.+.+... +..+.||....+|++..... +++|.||||++...+. .
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eT--------Qlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGET--------QLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCce--------EEEEecCCcccccchhhhHHHH
Confidence 35689999999999999999999998755 88899999999999976643 8999999999875332 1
Q ss_pred cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH------------
Q 016700 249 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ------------ 316 (384)
Q Consensus 249 ~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~------------ 316 (384)
..+.....+.++.||++++|+|+++....-. -.++..|+.|. ..|.++|.||+|.+.....+-
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh----cCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 1223344567889999999999996322221 23556677774 589999999999876432211
Q ss_pred ----HHHHHHHhcC----------C------cccccccccCHHHHHHHHHhccCccccc
Q 016700 317 ----SLTEEILKIG----------C------DKVTSETELSSEDAVKSLSTEGGEADLL 355 (384)
Q Consensus 317 ----~l~~~~~~~~----------~------~~~sa~t~~gv~e~l~~l~~~~~~~~~~ 355 (384)
++.+.+.... | ..+|+.+++|++++-++|.+.+......
T Consensus 218 ~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 218 KLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred hhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 1222222222 3 3678999999999999999887655443
No 175
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.69 E-value=2e-16 Score=138.33 Aligned_cols=155 Identities=20% Similarity=0.251 Sum_probs=111.5
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCce-eecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT-~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
||+++|.++||||||+++|.+.... ..+..|. .+.....+..+. ....+.|||++|..+. .....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~-------~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDG------KPVNLEIWDTSGQERF-------DSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETT------EEEEEEEEEETTSGGG-------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccccc------cccccccccccccccc-------ccccc
Confidence 6999999999999999999986532 2222222 233333333221 1226899999997432 22233
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa 332 (384)
..++.+|++++|+|.+++++++.+..|+..+..+.+ ...|+++|+||.|+.... +..+.+.+.+. ..+.++++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 143 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA 143 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence 457889999999999999999999999999998875 458999999999987522 22333443333 55678999
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
+++.++.++|..+.+.+
T Consensus 144 ~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 144 KNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988654
No 176
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.69 E-value=7.6e-17 Score=141.89 Aligned_cols=159 Identities=20% Similarity=0.255 Sum_probs=115.5
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC------CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 247 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~------~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~ 247 (384)
+.+.+|.++|.+|+|||||+|++...+. .|+ ..|-|.+.. ++ .. ...++||||+|+...
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg-adFltKev~---Vd--~~------~vtlQiWDTAGQERF--- 71 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG-ADFLTKEVQ---VD--DR------SVTLQIWDTAGQERF--- 71 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc-hhheeeEEE---Ec--Ce------EEEEEEEecccHHHh---
Confidence 4567899999999999999999987642 221 123333221 21 11 126899999999553
Q ss_pred ccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCh------HHHHHHHH
Q 016700 248 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA------RDRLQSLT 319 (384)
Q Consensus 248 ~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~------~e~~~~l~ 319 (384)
..|+..| ++.||++++|+|+..+.+++.+..|++|+..+.. .....|+||++||+|+... .+.+..+.
T Consensus 72 -qsLg~aF---YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC 147 (210)
T KOG0394|consen 72 -QSLGVAF---YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC 147 (210)
T ss_pred -hhcccce---ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH
Confidence 2233333 7889999999999999999999999999876642 2245899999999999763 23344444
Q ss_pred HHHHhcCCcccccccccCHHHHHHHHHhccCc
Q 016700 320 EEILKIGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 320 ~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..-..+.+.++||+...+++++|..++..+..
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 44445667899999999999999999877644
No 177
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.69 E-value=3.8e-16 Score=143.16 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=105.1
Q ss_pred EecCCCcHHHHHHHHHcCCCCccCCCCceeecce--EEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHHc
Q 016700 182 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 259 (384)
Q Consensus 182 vG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~--g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i 259 (384)
+|.++||||||++++...... ..|. +|+.... ..+..+. . ...+.||||||... +...+..++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~-~Tig~~~~~~~~~~~~----~--~~~l~iwDt~G~e~-------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTNR----G--PIRFNVWDTAGQEK-------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCC-CceeEEEEEEEEEECC----E--EEEEEEEECCCchh-------hhhhhHHHh
Confidence 599999999999999865422 2222 2322111 1122111 0 12789999999843 344455678
Q ss_pred ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCcccccccccC
Q 016700 260 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSETELS 337 (384)
Q Consensus 260 ~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~--~~~~~~~sa~t~~g 337 (384)
+.+|++|+|+|+++..+++.+..|..++..+. .+.|+++|+||+|+.......+. .+... .+.+.++|++++.+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~~~e~SAk~~~~ 141 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHH-HHHHHHcCCEEEEEeCCCCCC
Confidence 89999999999999988988888998888754 36899999999998542111111 12222 34567899999999
Q ss_pred HHHHHHHHHhccCc
Q 016700 338 SEDAVKSLSTEGGE 351 (384)
Q Consensus 338 v~e~l~~l~~~~~~ 351 (384)
++++|++|+..+..
T Consensus 142 v~~~F~~l~~~i~~ 155 (200)
T smart00176 142 FEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 178
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.68 E-value=3.6e-16 Score=141.13 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=103.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|+|||||+++|...... ..+..|+.......+.... ....+.+|||||..+... +. .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~~----~~---~ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDG------KPVQLALWDTAGQEEYER----LR---P 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECC------EEEEEEEEECCCChhccc----cc---h
Confidence 37999999999999999999854322 1222222222222222221 112588999999854311 11 1
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--------------HHHHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------------DRLQSLTEE 321 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--------------e~~~~l~~~ 321 (384)
.++..+|++++|+|+++.++++.+. .|..++.... .+.|+++|+||+|+.... +....+.+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 2467899999999999888887775 4777776544 359999999999985311 112222222
Q ss_pred HHhcCCcccccccccCHHHHHHHHHhccCc
Q 016700 322 ILKIGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 322 ~~~~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+....+.++|++++.+++++|+++++.+..
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 222346789999999999999999976643
No 179
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=134.89 Aligned_cols=159 Identities=24% Similarity=0.227 Sum_probs=110.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC--CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc---ccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---LGK 249 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~--~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~---~~~ 249 (384)
..+.|+++|.+|||||||||+|++.+ .+++..|+.|..++...+. +.+.++|.||+.--.. ..+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCcccccCCHHHHH
Confidence 45679999999999999999999987 6779999999999887764 2589999999842110 112
Q ss_pred chhHHHHHHcc---cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-
Q 016700 250 GLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI- 325 (384)
Q Consensus 250 gl~~~fl~~i~---~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~- 325 (384)
........|++ .-.++++++|+.......+.+ +++.+.. .+.|+++|+||+|.....+..+.+....+.+
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e-m~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDRE-MIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 22233334442 356788999998866655543 4455554 3699999999999987655433333322222
Q ss_pred ---C----CcccccccccCHHHHHHHHHhccC
Q 016700 326 ---G----CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 326 ---~----~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
. +...|+.+..|++++...|.+.+.
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1 334577888999999888876553
No 180
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.67 E-value=2.3e-15 Score=136.60 Aligned_cols=142 Identities=19% Similarity=0.277 Sum_probs=89.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-cC---------------CCCceeecceEEecCCCCCCccccCCceEEEeCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~---------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtP 239 (384)
+.+|+++|.+|+|||||+++|+.....+ .. ..++|.......+.... ..+.+||||
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~--------~~~~l~Dtp 73 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD--------TKINIVDTP 73 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC--------EEEEEEECC
Confidence 4579999999999999999998632111 11 12333333333333221 378999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 317 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~~ 317 (384)
|+.+ +...+..+++.+|++++|+|+++.. ......++..+.. .+.|+++|+||+|+... .+..++
T Consensus 74 G~~~-------~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~ 140 (194)
T cd01891 74 GHAD-------FGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDE 140 (194)
T ss_pred CcHH-------HHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 9854 4455667789999999999998743 2233333333332 35899999999999643 223444
Q ss_pred HHHHHHh---------cCCcccccccccCH
Q 016700 318 LTEEILK---------IGCDKVTSETELSS 338 (384)
Q Consensus 318 l~~~~~~---------~~~~~~sa~t~~gv 338 (384)
+.+.+.. ..+.++|+.++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~ 170 (194)
T cd01891 141 VFDLFIELGATEEQLDFPVLYASAKNGWAS 170 (194)
T ss_pred HHHHHHHhCCccccCccCEEEeehhccccc
Confidence 5554422 22346677777554
No 181
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=6.4e-16 Score=136.26 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=94.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|||||||+|+|.+.... . ...+.+.+.. ..+|||||+.... ..+...+..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~--------~~~~~v~~~~----------~~~iDtpG~~~~~---~~~~~~~~~ 60 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A--------RKTQAVEFND----------KGDIDTPGEYFSH---PRWYHALIT 60 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C--------ccceEEEECC----------CCcccCCccccCC---HHHHHHHHH
Confidence 6999999999999999999876421 1 1112222211 1369999984321 123333445
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC----Ccccccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG----CDKVTSE 333 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~----~~~~sa~ 333 (384)
.+..||++++|+|+++.++.... + +..+. ..+|+++++||+|+.... .+.+.+.+...+ +.++|+.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~--~---~~~~~---~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~p~~~~Sa~ 130 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA--G---LLDIG---VSKRQIAVISKTDMPDAD--VAATRKLLLETGFEEPIFELNSH 130 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH--H---HHhcc---CCCCeEEEEEccccCccc--HHHHHHHHHHcCCCCCEEEEECC
Confidence 57899999999999976544221 1 11111 257999999999986532 344445554554 4578999
Q ss_pred cccCHHHHHHHHHhccCc
Q 016700 334 TELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~~ 351 (384)
++.+++++++.+++.+..
T Consensus 131 ~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 131 DPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CccCHHHHHHHHHHhchh
Confidence 999999999999877644
No 182
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.66 E-value=3.9e-16 Score=143.69 Aligned_cols=90 Identities=43% Similarity=0.668 Sum_probs=83.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
++|+++|+|.+||||||..++......+.|.|||+....|++.+.+. .+++.|.||++++|++++|.+++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--------~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--------NIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--------eEEEecCcccccccccCCCCCceEE
Confidence 78999999999999999999999999999999999999999988754 7999999999999999999999988
Q ss_pred HHcccCCeEEEEeeCCCC
Q 016700 257 RHLRRTRLLVHVIDAAAE 274 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~ 274 (384)
...+.||++|+|+|++..
T Consensus 135 avArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKS 152 (364)
T ss_pred EEeecccEEEEEecCCcc
Confidence 888889999999999863
No 183
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=6.3e-16 Score=131.48 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=119.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCce-eecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT-~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
..+++.+|+|.|++|||||+.++..... ..+|..|+ .+..+.+++..+. ..++.||||+|. +.+.
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkirTv~i~G~------~VkLqIwDtAGq-------ErFr 71 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIRTVDINGD------RVKLQIWDTAGQ-------ERFR 71 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEEEeecCCc------EEEEEEeecccH-------HHHH
Confidence 3456778999999999999999987632 23343222 2445555554432 347999999998 5577
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHhc--CCcc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKI--GCDK 329 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-~~l~~~~~~~--~~~~ 329 (384)
.....+++..+.+++|+|+++.+++...+.|+++++.-.+ ..|-++|.||.|+++..... ++...+...+ .+.+
T Consensus 72 titstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 72 TITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFE 148 (198)
T ss_pred HHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHhcCchhee
Confidence 7778889999999999999999999999999999987554 68889999999998643221 2222333333 4678
Q ss_pred cccccccCHHHHHHHHHhccC
Q 016700 330 VTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+|++...+++..|..|.+...
T Consensus 149 TSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred hhhhhcccchHHHHHHHHHHH
Confidence 999999999999999887553
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=9.8e-16 Score=161.25 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=104.5
Q ss_pred ecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhHHHHHHcc
Q 016700 183 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR 260 (384)
Q Consensus 183 G~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~~fl~~i~ 260 (384)
|.||||||||+|+|++.+..++++|++|.+...+.+.+.+ .++.+|||||+.+.... .+.+.+.++. .+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--------~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--------EDIEIVDLPGIYSLTTFSLEEEVARDYLL-NE 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--------eEEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence 8899999999999999988889999999999888877643 26899999999764322 1222233322 25
Q ss_pred cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCcccccccccCH
Q 016700 261 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSETELSS 338 (384)
Q Consensus 261 ~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~--~~~~~sa~t~~gv 338 (384)
.+|++++|+|+++.+. ... +..++.. .++|+++|+||+|+.+.........+..+.+ .+.++|+.++.|+
T Consensus 72 ~aDvvI~VvDat~ler--~l~-l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 72 KPDLVVNVVDASNLER--NLY-LTLQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred CCCEEEEEecCCcchh--hHH-HHHHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCH
Confidence 7899999999987432 222 2223332 3689999999999864322111222222233 4568899999999
Q ss_pred HHHHHHHHhc
Q 016700 339 EDAVKSLSTE 348 (384)
Q Consensus 339 ~e~l~~l~~~ 348 (384)
+++++.+...
T Consensus 144 ~eL~~~i~~~ 153 (591)
T TIGR00437 144 ERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 185
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.64 E-value=1.4e-15 Score=137.57 Aligned_cols=157 Identities=23% Similarity=0.315 Sum_probs=103.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccC------------------CCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~------------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
|.+..|+++|..++|||||+.+|+...-.+.. ....|.......+... .-...+++
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~------~~~~~i~~ 74 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKN------ENNRKITL 74 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBT------ESSEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccc------ccccceee
Confidence 34678999999999999999999854322110 1122333333333200 01237999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HH
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 313 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e 313 (384)
+||||+.+ +.....+.+..+|++|+|||+.+....+..+ .+..+.. .+.|+++|+||+|+... .+
T Consensus 75 iDtPG~~~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~-~l~~~~~-----~~~p~ivvlNK~D~~~~~~~~ 141 (188)
T PF00009_consen 75 IDTPGHED-------FIKEMIRGLRQADIAILVVDANDGIQPQTEE-HLKILRE-----LGIPIIVVLNKMDLIEKELEE 141 (188)
T ss_dssp EEESSSHH-------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHH-HHHHHHH-----TT-SEEEEEETCTSSHHHHHH
T ss_pred cccccccc-------eeecccceecccccceeeeeccccccccccc-ccccccc-----cccceEEeeeeccchhhhHHH
Confidence 99999854 4556677789999999999998765544443 4445554 36889999999999832 12
Q ss_pred HHHHHHHHH-Hhc--------CCcccccccccCHHHHHHHHHhcc
Q 016700 314 RLQSLTEEI-LKI--------GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 314 ~~~~l~~~~-~~~--------~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
..+++.+.+ +.. .+.++|+.++.|++++++.|.+.+
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 333333222 222 245789999999999999998765
No 186
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.64 E-value=1.6e-15 Score=139.58 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=92.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCcc-------------------------------CCCCceeecceEEecCCCCCCc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLGA 226 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia-------------------------------~~~~tT~~p~~g~v~~~~~~~~ 226 (384)
+|+|+|.+|+|||||+++|+...-.+. ...++|++.....+....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC----
Confidence 589999999999999999975432221 114566666665554432
Q ss_pred cccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 227 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 227 ~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
.++.|+||||+.+ +...+...+..+|++|+|+|++.....+... +...+..+. ..++|+|+||+
T Consensus 77 ----~~~~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~~~----~~~iIvviNK~ 140 (208)
T cd04166 77 ----RKFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSLLG----IRHVVVAVNKM 140 (208)
T ss_pred ----ceEEEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHHcC----CCcEEEEEEch
Confidence 3799999999843 3344566788999999999998754333322 223333221 24578899999
Q ss_pred CCCCh-HH----HHHHHHHHHHhcC-----CcccccccccCHHH
Q 016700 307 DLPEA-RD----RLQSLTEEILKIG-----CDKVTSETELSSED 340 (384)
Q Consensus 307 Dl~~~-~e----~~~~l~~~~~~~~-----~~~~sa~t~~gv~e 340 (384)
|+... .+ ...++.+.+..++ +.++|+.++.++.+
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 98742 22 2233444444554 34678888888764
No 187
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.63 E-value=9.2e-15 Score=127.02 Aligned_cols=154 Identities=22% Similarity=0.266 Sum_probs=99.1
Q ss_pred eEEEEecCCCcHHHHHHHHHc--CCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc---cccc--
Q 016700 178 DVGLVGLPNAGKSTLLAAITH--AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---LGKG-- 250 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~--~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~---~~~g-- 250 (384)
+|+|+|.+|||||||++.|++ ..+..+..+++|.......+. ..+.++||||+..... ..+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~D~~g~~~~~~~~~~~~~~~ 69 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-----------DKFRLVDLPGYGYAKVSKEVKEKWG 69 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-----------CeEEEecCCCccccccCHHHHHHHH
Confidence 589999999999999999993 334456666666654433221 2689999999865311 0111
Q ss_pred -hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHH---
Q 016700 251 -LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL--- 323 (384)
Q Consensus 251 -l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~--- 323 (384)
+...++...+.++++++|+|.......... .+...+.. .+.|+++|+||+|+....+ ....+...++
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~ 143 (170)
T cd01876 70 KLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE 143 (170)
T ss_pred HHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence 222333444567889999999865433332 23344443 2489999999999965332 2222333332
Q ss_pred -hcCCcccccccccCHHHHHHHHHhc
Q 016700 324 -KIGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 324 -~~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
...+.++++.++.++.++++.|++.
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 1234578999999999999998764
No 188
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.62 E-value=1e-14 Score=133.80 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=99.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC--c-cCCCCceeecceEEecCC---------C----------C------CCcccc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMPNLGRLDGD---------P----------T------LGAEKY 229 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~--i-a~~~~tT~~p~~g~v~~~---------~----------~------~~~~~~ 229 (384)
.|+++|..++|||||+.+|++.... . .-.-..|+......+... + . ......
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 5899999999999999999865210 0 000111221111111110 0 0 000001
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCH-hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~-~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
...+.||||||+. .+...++..+..+|++++|+|++++... +... .+..+..+. ..|+++|+||+|+
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~~----~~~iiivvNK~Dl 149 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIMG----LKHIIIVQNKIDL 149 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHcC----CCcEEEEEEchhc
Confidence 1478999999973 3566777888889999999999874222 2222 223333221 2579999999999
Q ss_pred CChHH---HHHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccCc
Q 016700 309 PEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 309 ~~~~e---~~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
....+ ..+.+.+.+.. ..+.++|+.++.|++++++.|.+.+.+
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 86432 23344444432 235578999999999999999876644
No 189
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.62 E-value=6.5e-15 Score=154.53 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=105.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+.|+++|.+|+|||||+++|.+.+.....++++|.+.....+.... ...++||||||+.+ +...
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~-------F~~~ 151 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEA-------FTSM 151 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcc-------hhhH
Confidence 347899999999999999999998765555566667654444443321 12699999999844 4445
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh----------
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---------- 324 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~---------- 324 (384)
+.+.+..+|++++|+|+++....+....+. .+.. .+.|+++++||+|+.... .+.+.+.+..
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~-~~~~-----~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~ 223 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAIS-HAKA-----ANVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGG 223 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHH-HHHH-----cCCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCC
Confidence 556788899999999998765545444332 2322 368999999999996421 1122222211
Q ss_pred -cCCcccccccccCHHHHHHHHHh
Q 016700 325 -IGCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 325 -~~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
..+.++|+.++.|++++++++..
T Consensus 224 ~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 224 DTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CceEEEEECCCCCChHHHHHhhhh
Confidence 23568899999999999999864
No 190
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.1e-15 Score=125.87 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=118.5
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
...+.++.++|...+|||||+-+..+....++-+...-++-...++.... -+.+++||||+|+ +.+.
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~------kRiklQiwDTagq-------Eryr 84 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD------KRIKLQIWDTAGQ-------ERYR 84 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc------cEEEEEEEecccc-------hhhh
Confidence 34566999999999999999999988764443322112233333332221 1237999999998 4456
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcCC--cc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC--DK 329 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~~--~~ 329 (384)
...-.+++.++.+|+++|+++.+++..++.|.-.++.|.. .+.|+|+|+||||+.+++. ..+.-......+|+ .+
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 6667788999999999999999999999999999999864 5799999999999986532 12333444455664 47
Q ss_pred cccccccCHHHHHHHHHhcc
Q 016700 330 VTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+++...+++.+|..+...+
T Consensus 163 tSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 163 TSAKENINVKQVFERLVDII 182 (193)
T ss_pred hcccccccHHHHHHHHHHHH
Confidence 88888899999988776654
No 191
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=6.2e-16 Score=153.94 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=118.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh----
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG---- 252 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~---- 252 (384)
..+.|+|+||+|||||+|.++.+++.+.+|+|||.....|.+++... .++++||||+.+...+.+..-
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl--------rwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL--------RWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee--------eeeecCCccccCcchhhhhHHHHHH
Confidence 46899999999999999999999999999999999999998876532 789999999998766544321
Q ss_pred HHHHHHcccCCeEEEEeeCCC--CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHHhcC-
Q 016700 253 RNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIG- 326 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~~~~~~- 326 (384)
...+.|++. ++||++|.|. ..+.++.-.|++.++ |-+.++|+|+|+||+|+...+ +.-+++.+.+...+
T Consensus 241 ITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIK---pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 241 ITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIK---PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhH---HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 234667764 5899999987 344444444555554 345689999999999986542 22334444444444
Q ss_pred --CcccccccccCHHHHHHHHHhccC
Q 016700 327 --CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 --~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+...|..+.+|+.++-...|+.+.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 456677788888888777777653
No 192
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-15 Score=134.86 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=111.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|+++|.-||||||++..|.-.+.-.. ..|+.-++..+.+... +|++||..|+ ..++..|
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~--------~f~vWDvGGq-------~k~R~lW 78 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNI--------SFTVWDVGGQ-------EKLRPLW 78 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcce--------EEEEEecCCC-------cccccch
Confidence 35799999999999999999976553211 2355555666666543 8999999999 3467778
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~~ 328 (384)
..|+..++.+|||||.++.+.....+.-+..+-. .+++...|+++.+||.|++.+.. ..++.+.+. .+.+.
T Consensus 79 ~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~-~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 79 KHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLA-EPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred hhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHc-CcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEe
Confidence 8899999999999999997766554322222222 23356899999999999987543 233333331 23455
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.+.+.+++|+.+.++++.+.+.
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred eccccccccHHHHHHHHHHHHh
Confidence 7899999999999999987764
No 193
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.60 E-value=6.4e-15 Score=124.07 Aligned_cols=152 Identities=20% Similarity=0.163 Sum_probs=97.0
Q ss_pred EEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcc
Q 016700 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 260 (384)
Q Consensus 181 lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~ 260 (384)
|+|.+|+|||||+++|.+.......+..|........+.... ....+.+||+||+.+. .......+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------KKVKLQIWDTAGQERF-------RSLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------EEEEEEEEecCChHHH-------HhHHHHHhc
Confidence 589999999999999998765322222222222222222111 1236899999998653 222345678
Q ss_pred cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH----HHHHHHhcCCccccccccc
Q 016700 261 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS----LTEEILKIGCDKVTSETEL 336 (384)
Q Consensus 261 ~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~----l~~~~~~~~~~~~sa~t~~ 336 (384)
.+|++++|+|++.....+....++..... .......|+++|+||+|+......... .........+..+++..+.
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 89999999999987666655544211111 112347999999999999764332222 1122233456688999999
Q ss_pred CHHHHHHHHH
Q 016700 337 SSEDAVKSLS 346 (384)
Q Consensus 337 gv~e~l~~l~ 346 (384)
++++++++|.
T Consensus 147 ~i~~~~~~l~ 156 (157)
T cd00882 147 NVEELFEELA 156 (157)
T ss_pred ChHHHHHHHh
Confidence 9999999875
No 194
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=4.4e-15 Score=128.33 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=116.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEE------ecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~------v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
.+..+||.+-+||||||..++..+.+-- .+|++|+ ++..+ .+..++++|||+|+ +.
T Consensus 9 frlivigdstvgkssll~~ft~gkfael------sdptvgvdffarlie~~p-----g~riklqlwdtagq-------er 70 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL------SDPTVGVDFFARLIELRP-----GYRIKLQLWDTAGQ-------ER 70 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccccc------CCCccchHHHHHHHhcCC-----CcEEEEEEeeccch-------HH
Confidence 4678999999999999999997763221 1454443 22222 12347999999998 55
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-Hhc--CC
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKI--GC 327 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~-~~~--~~ 327 (384)
++.....|++.+-.+++|+|.++..+++.++.|..|-..+-....+.-+++|..|+||...++.-.+-.+.+ ... .+
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~F 150 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAF 150 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceE
Confidence 777788899999999999999999999999999999887665444455889999999986544322223333 333 46
Q ss_pred cccccccccCHHHHHHHHHhcc
Q 016700 328 DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.++|+++++++++.++.|+.++
T Consensus 151 VETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 151 VETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred EEecccCCCcHHHHHHHHHHHH
Confidence 6889999999999999998865
No 195
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.59 E-value=1.7e-14 Score=155.08 Aligned_cols=153 Identities=21% Similarity=0.198 Sum_probs=106.7
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+.|+|+|..|+|||||+++|...+.....+++.|.+.....+.+.. ..++||||||+.+ +..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--------~~ItfiDTPGhe~-------F~~ 352 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--------GKITFLDTPGHEA-------FTA 352 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--------EEEEEEECCCCcc-------chh
Confidence 4557899999999999999999987665545566666655444444322 3799999999844 444
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHH---HHh----
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---ILK---- 324 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~---~~~---- 324 (384)
.+.+.+..+|++|+|||+++....+....|. .+.. .+.|+|||+||+|+.... ....++.+. ...
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~-~a~~-----~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~ 426 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAIN-HAKA-----AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGD 426 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHH-HHHh-----cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCC
Confidence 5566788899999999998765444444332 2332 368999999999997531 222222210 111
Q ss_pred cCCcccccccccCHHHHHHHHHh
Q 016700 325 IGCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 325 ~~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
+.+.++|+.++.|+++++++|..
T Consensus 427 vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 427 TIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred ceEEEEeCCCCCCchHHHHhhhh
Confidence 34668899999999999999874
No 196
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.3e-14 Score=124.10 Aligned_cols=160 Identities=15% Similarity=0.064 Sum_probs=115.1
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecce--EEecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~--g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
...+.+++++|..|.|||.||..+...+.+-. .-.|+.... ..+.... -..+++||||+|+ +.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDd--ssHTiGveFgSrIinVGg------K~vKLQIWDTAGQ-------Er 70 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDD--SSHTIGVEFGSRIVNVGG------KTVKLQIWDTAGQ-------ER 70 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhccc--ccceeeeeecceeeeecC------cEEEEEEeecccH-------HH
Confidence 34578999999999999999999997653321 111222111 1222211 1237999999998 44
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-HHHHHHH--hcCC
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEIL--KIGC 327 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~-~l~~~~~--~~~~ 327 (384)
++.-...|++.|...++|+|+++.++++.+..|+...+...+ .+.-++++.||.||...++..- +..+..+ .+.+
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 666667788999999999999999999999999988887654 4577889999999987655322 2222222 3456
Q ss_pred cccccccccCHHHHHHHHHhcc
Q 016700 328 DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.++++.|+++++|.|-..+..+
T Consensus 149 lETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred eeecccccccHHHHHHHHHHHH
Confidence 7899999999999997766544
No 197
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.59 E-value=2.4e-14 Score=150.82 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=107.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccC---------------CCCceeecceEEecCCCCCCccccCCceEEEeCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~---------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG 240 (384)
+.+|+|+|.+++|||||+++|+.....+.. ..+.|+......+.+.. .+.. ...+.||||||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~~g~--~~~l~liDTPG 79 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-KDGE--TYVLNLIDTPG 79 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-CCCC--EEEEEEEECCC
Confidence 567999999999999999999865322211 11334333322232210 0000 12689999999
Q ss_pred CccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHHH
Q 016700 241 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSL 318 (384)
Q Consensus 241 ~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~~l 318 (384)
+.+ +...+.+++..||++|+|+|+++....++...|+..+. .+.|+++|+||+|+... .+..+++
T Consensus 80 ~~d-------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~el 146 (595)
T TIGR01393 80 HVD-------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKEI 146 (595)
T ss_pred cHH-------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHHH
Confidence 965 45566778899999999999998776666665554443 25799999999999643 2222333
Q ss_pred HHHHHhc--CCcccccccccCHHHHHHHHHhccCcc
Q 016700 319 TEEILKI--GCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 319 ~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
.+.+... .+.++|+.++.|+++++++|.+.+...
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 3332210 145789999999999999999877543
No 198
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.58 E-value=2.1e-15 Score=125.39 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=75.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC---c-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~---i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
||+|+|.+|||||||+++|.+.... . .+....+.......+.... ..+.+||++|..+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~g~~~~~~~------ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR--------QSLQFWDFGGQEEFYSQ------ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE--------EEEEEEEESSSHCHHCT------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc--------eEEEEEecCccceeccc------
Confidence 6899999999999999999987654 1 2222333332333333221 24889999998543211
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
....+..+|++++|+|++++.+++.+..+...+........+.|+++|+||.|
T Consensus 67 -~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 -HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11227889999999999998777776555444544332223599999999998
No 199
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=1.9e-14 Score=153.52 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=106.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+.|+|+|.+++|||||+++|..........++.|.+.....+..... .....++||||||+.. +..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~----~~~~kItfiDTPGhe~-------F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK----DENQKIVFLDTPGHEA-------FSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec----CCceEEEEEECCcHHH-------HHH
Confidence 45678999999999999999999987655544555665443333321100 0013799999999843 455
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHH---HHh----
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---ILK---- 324 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~---~~~---- 324 (384)
.+.+++..||++|+|||+++....+..+.+. .+.. .+.|+|+|+||+|+.... +..+.+... ...
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA-----ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh-----cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCC
Confidence 5667788999999999998765555444443 3332 468999999999997532 112222111 111
Q ss_pred cCCcccccccccCHHHHHHHHHhc
Q 016700 325 IGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 325 ~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
..+.++|+.++.|++++++.|+..
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhh
Confidence 235688999999999999988764
No 200
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=4.1e-14 Score=130.47 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=104.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||++++...... ..| .+|.........+... .. ...+.+|||||... +.....
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~--~~--~i~i~~~Dt~g~~~-------~~~~~~ 76 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFE-KKY-IPTLGVEVHPLKFYTN--CG--PICFNVWDTAGQEK-------FGGLRD 76 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCccceEEEEEEEEEC--Ce--EEEEEEEECCCchh-------hhhhhH
Confidence 58999999999999999876543321 111 1233222222211000 00 12689999999743 222334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa~t 334 (384)
.++..++++++|+|+++..++..+..|...+.... .+.|+++|+||+|+....... +..+.... +.+.++|+.+
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKA-RQITFHRKKNLQYYDISAKS 152 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCH-HHHHHHHHcCCEEEEEeCCC
Confidence 45678999999999999888888888877777543 358999999999986432111 11222233 3456889999
Q ss_pred ccCHHHHHHHHHhccCcc
Q 016700 335 ELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~~~~ 352 (384)
+.++++.+.+|+..+...
T Consensus 153 ~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTND 170 (215)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999876543
No 201
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.57 E-value=1.1e-14 Score=123.95 Aligned_cols=155 Identities=25% Similarity=0.365 Sum_probs=110.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+.-..+.++|.-|+|||||+|.+..... ..+...|...+...++-.. ..+.+||+||+ +.+..
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkgn--------vtiklwD~gGq-------~rfrs 80 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKGN--------VTIKLWDLGGQ-------PRFRS 80 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccCc--------eEEEEEecCCC-------ccHHH
Confidence 4556789999999999999998875432 1122334433333333222 26899999998 45788
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHH--hcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-------Hh
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR--MYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-------LK 324 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~--~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~-------~~ 324 (384)
.|.++.+.+++++||||+++++.++.. ++||+ .+.+.+..+|++|+.||.|++++-.. ..+.+.+ .+
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~s---r~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEAS---RSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-IALIERMGLSSITDRE 156 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhh---HHHHHHHhcchhhcCCcEEEecccccCcccccH-HHHHHHhCccccccce
Confidence 899999999999999999987665443 34444 24567788999999999999876432 2233332 23
Q ss_pred cCCcccccccccCHHHHHHHHHhcc
Q 016700 325 IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 325 ~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
..+..+|++...+++-.++||.++-
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHh
Confidence 4566789999999999999987653
No 202
>PLN00023 GTP-binding protein; Provisional
Probab=99.56 E-value=4.8e-14 Score=136.85 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=85.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeec--ceEEecCCCC-------CCccccCCceEEEeCCCCcccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPT-------LGAEKYSSEATLADLPGLIEGAHL 247 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p--~~g~v~~~~~-------~~~~~~~~~i~i~DtPG~~~~a~~ 247 (384)
.||+|+|..+||||||+++|.+..... .+ ..|+.. ....+.+... .........+.||||+|...
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~-~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr---- 95 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIA-RP-PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER---- 95 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCccc-cc-CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh----
Confidence 589999999999999999999764321 11 122222 1222322210 00000012589999999843
Q ss_pred ccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCC
Q 016700 248 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 248 ~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~----------~l~~~p~ivV~NK~Dl~~ 310 (384)
+...+..+++.++++|+|+|+++..+++.+..|++++..+.. .....|++||+||+||..
T Consensus 96 ---frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 ---YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ---hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 344455668899999999999999999999999999886531 112589999999999965
No 203
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.56 E-value=2.9e-14 Score=130.88 Aligned_cols=124 Identities=15% Similarity=0.052 Sum_probs=85.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeec--ceEEecCCCC-CCccccCCceEEEeCCCCccccccccchhH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPT-LGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p--~~g~v~~~~~-~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
.+|+++|.++||||||++++......-. +. .|+.. ....+.+... ..... ..+.||||+|..+ +..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-~~-~Tig~~~~~k~~~~~~~~~~~~~--~~l~IwDtaG~e~-------~~~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-PS-WTVGCSVDVKHHTYKEGTPEEKT--FFVELWDVGGSES-------VKS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-CC-cceeeeEEEEEEEEcCCCCCCcE--EEEEEEecCCchh-------HHH
Confidence 3799999999999999999997653322 22 23221 1222222110 00011 2689999999844 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCh
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-----------------~l~~~p~ivV~NK~Dl~~~ 311 (384)
....++..+|++|+|+|+++.++++.+..|+.++..... .....|+++|+||+|+...
T Consensus 70 l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 70 TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 344567889999999999999999999999988875321 1135899999999999653
No 204
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.56 E-value=3.9e-14 Score=130.02 Aligned_cols=121 Identities=25% Similarity=0.334 Sum_probs=79.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
+.|+|+|+++||||||+++|...+... . .++..++...+..... .....+.||||||+.. +...+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t--~~s~~~~~~~~~~~~~----~~~~~~~l~D~pG~~~-------~~~~~~ 66 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-T--VTSIEPNVATFILNSE----GKGKKFRLVDVPGHPK-------LRDKLL 66 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-c--cCcEeecceEEEeecC----CCCceEEEEECCCCHH-------HHHHHH
Confidence 368999999999999999999764321 1 2233445444432210 0123689999999853 556677
Q ss_pred HHcccC-CeEEEEeeCCCC-CCHhHHHHHH-HHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 257 RHLRRT-RLLVHVIDAAAE-NPVNDYRTVK-EELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 257 ~~i~~a-d~il~VvD~s~~-~~~~~~~~l~-~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++..+ +++|||+|+++. ....+...++ ..+..........|+++|+||+|+..+
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 788888 999999999985 3444333332 222221111136999999999998653
No 205
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.56 E-value=6.1e-14 Score=147.57 Aligned_cols=151 Identities=19% Similarity=0.121 Sum_probs=104.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC---ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~---ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.|+++|.+|+|||||+++|++.... ....++.|++.....+.... ..+.||||||+. .+...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--------~~v~~iDtPGhe-------~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------YRLGFIDVPGHE-------KFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--------EEEEEEECCCHH-------HHHHH
Confidence 4899999999999999999975421 12245667766655555432 278999999983 35556
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHH---HHHHHHHHHHhc-----
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKI----- 325 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e---~~~~l~~~~~~~----- 325 (384)
+...+..+|++++|||+++....+..+.+ ..+.. .+.| +++|+||+|+.+... ..+++.+.+...
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~ 140 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKN 140 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67778899999999999875433443333 23332 3567 999999999986432 122333444332
Q ss_pred -CCcccccccccCHHHHHHHHHhcc
Q 016700 326 -GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 326 -~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.++|+.++.|+++++..|....
T Consensus 141 ~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 141 AKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CcEEEEeCCCCCCchhHHHHHHHHH
Confidence 345789999999999998886654
No 206
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=7.4e-14 Score=120.41 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=98.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|.|||..+||||||+++|.+.+... . .|. .+.+. . .++||||-- .++..+.+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~---~-KTq-----~i~~~---------~--~~IDTPGEy---iE~~~~y~aLi 58 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY---K-KTQ-----AIEYY---------D--NTIDTPGEY---IENPRFYHALI 58 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc---C-ccc-----eeEec---------c--cEEECChhh---eeCHHHHHHHH
Confidence 479999999999999999999865321 1 111 11111 1 459999952 23455666666
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCc---ccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~---~~sa~ 333 (384)
.....||++++|.|++++.....-. ... ...+|+|-|+||+|+....+..+..+++++..|+. .+|+.
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~----fa~-----~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPG----FAS-----MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCch----hhc-----ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 6678999999999999754322111 011 13599999999999996566777888888877665 67999
Q ss_pred cccCHHHHHHHHH
Q 016700 334 TELSSEDAVKSLS 346 (384)
Q Consensus 334 t~~gv~e~l~~l~ 346 (384)
+++|++++.+.|.
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999998874
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.55 E-value=4e-14 Score=143.97 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=96.0
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPT 223 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~~ 223 (384)
....|+++|.+|+|||||+++|+...-.+ ...+++|++.....+....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~- 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK- 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence 34679999999999999999998543222 1146778777776665443
Q ss_pred CCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCC--CCCHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 224 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 224 ~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
..+.||||||+.+ +.......+..+|++|+|+|+++ ....+... ....+..+. ..|+++
T Consensus 84 -------~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~~----~~~iiv 144 (425)
T PRK12317 84 -------YYFTIVDCPGHRD-------FVKNMITGASQADAAVLVVAADDAGGVMPQTRE-HVFLARTLG----INQLIV 144 (425)
T ss_pred -------eEEEEEECCCccc-------chhhHhhchhcCCEEEEEEEcccCCCCCcchHH-HHHHHHHcC----CCeEEE
Confidence 3799999999843 33334455678999999999987 32222222 222233221 246999
Q ss_pred EEeCCCCCCh-HHH----HHHHHHHHHhcC-------CcccccccccCHHH
Q 016700 302 VLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSED 340 (384)
Q Consensus 302 V~NK~Dl~~~-~e~----~~~l~~~~~~~~-------~~~~sa~t~~gv~e 340 (384)
|+||+|+... .+. .+++.+.+...+ +.++|+.++.++++
T Consensus 145 viNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 145 AINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 9999999752 222 234444444444 34679999999886
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.55 E-value=1.4e-13 Score=125.71 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=90.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC----------------ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD----------------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~----------------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG 240 (384)
..|+++|.+++|||||+++|+..... .....++|++.....+... ..++.++||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG 74 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPG 74 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcC
Confidence 46999999999999999999853110 0113455665544444322 23789999999
Q ss_pred CccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH---
Q 016700 241 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ--- 316 (384)
Q Consensus 241 ~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~~--- 316 (384)
+.+ +.....+.+..+|++++|+|++.....++. .++..+.. .++| +|+|+||+|+....+..+
T Consensus 75 ~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~ 141 (195)
T cd01884 75 HAD-------YIKNMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ-----VGVPYIVVFLNKADMVDDEELLELVE 141 (195)
T ss_pred HHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHH
Confidence 843 445556778889999999999875433333 33344544 2466 789999999975443333
Q ss_pred -HHHHHHHhcCC-------cccccccccC
Q 016700 317 -SLTEEILKIGC-------DKVTSETELS 337 (384)
Q Consensus 317 -~l~~~~~~~~~-------~~~sa~t~~g 337 (384)
++.+.+..+++ .++|+.++.+
T Consensus 142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 142 MEVRELLSKYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred HHHHHHHHHhcccccCCeEEEeeCccccC
Confidence 44555555443 3566666554
No 209
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=3.7e-14 Score=129.18 Aligned_cols=162 Identities=17% Similarity=0.116 Sum_probs=100.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC--CCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH--
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-- 253 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~--~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~-- 253 (384)
+|+|+|.||||||||+|+|++.+..... .+..|.....+...... ..+.++||||+.+.......+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~i~viDTPG~~d~~~~~~~~~~~i 73 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--------RRVNVIDTPGLFDTSVSPEQLSKEI 73 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--------eEEEEEECcCCCCccCChHHHHHHH
Confidence 6999999999999999999998765433 45667766665544332 37999999999875432222222
Q ss_pred --HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCChHH-------HHHHHHHHHH
Q 016700 254 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEARD-------RLQSLTEEIL 323 (384)
Q Consensus 254 --~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~-~~~~l~~~p~ivV~NK~Dl~~~~e-------~~~~l~~~~~ 323 (384)
.+.......|++|||+|+.. ...++.. +.+.+.. +.+. .-+++++|+|++|.....+ .-..+...++
T Consensus 74 ~~~~~~~~~g~~~illVi~~~~-~t~~d~~-~l~~l~~~fg~~-~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~ 150 (196)
T cd01852 74 VRCLSLSAPGPHAFLLVVPLGR-FTEEEEQ-AVETLQELFGEK-VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE 150 (196)
T ss_pred HHHHHhcCCCCEEEEEEEECCC-cCHHHHH-HHHHHHHHhChH-hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH
Confidence 22333467899999999887 4444433 3444443 3321 2378999999999765321 0123333334
Q ss_pred hcCCc-----cc--ccccccCHHHHHHHHHhccC
Q 016700 324 KIGCD-----KV--TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 324 ~~~~~-----~~--sa~t~~gv~e~l~~l~~~~~ 350 (384)
.++-. .. +......++++++.+.+.+.
T Consensus 151 ~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 151 KCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred HhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 43211 11 24456677777777665543
No 210
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=137.22 Aligned_cols=163 Identities=28% Similarity=0.212 Sum_probs=121.4
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
+-...+-|++||++|||||||+++|+.+.....+..|.|++|+........ +..+.+.||-|++..- ..++
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisdL--P~~L 244 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISDL--PIQL 244 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhhC--cHHH
Confidence 334567899999999999999999997766668889999999876655432 3468999999998642 2233
Q ss_pred hH---HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC
Q 016700 252 GR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 326 (384)
Q Consensus 252 ~~---~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~ 326 (384)
.. +.+.++..+|++|+|+|+|+++..++.+..+.-|....- ......++-|-||+|..+..-. -+..+
T Consensus 245 vaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------~E~n~ 317 (410)
T KOG0410|consen 245 VAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------EEKNL 317 (410)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------cccCC
Confidence 33 447778889999999999999988888888877776542 1112447889999998653210 12234
Q ss_pred CcccccccccCHHHHHHHHHhccC
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
...+++.++.|+++++..+.++..
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccccCccHHHHHHHHHHHhh
Confidence 567789999999999988877654
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.52 E-value=8.5e-14 Score=129.19 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=89.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCCCCCc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA 226 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~~~~~ 226 (384)
.|+++|.+++|||||+.+|....-.+ ....++|++.....+....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence 38999999999999999996321100 1123455555555554432
Q ss_pred cccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-------CHhHHHHHHHHHHhcCCCCCCCCE
Q 016700 227 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERPF 299 (384)
Q Consensus 227 ~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-------~~~~~~~l~~eL~~~~~~l~~~p~ 299 (384)
..+.++||||+.+ +...+...+..+|++|+|+|+++.. ..+....+ ..+.. +..+|+
T Consensus 77 ----~~i~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~i 140 (219)
T cd01883 77 ----YRFTILDAPGHRD-------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART----LGVKQL 140 (219)
T ss_pred ----eEEEEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH----cCCCeE
Confidence 3799999999843 3455667788899999999998742 11222222 22222 123689
Q ss_pred EEEEeCCCCCCh---HHHHH----HHHHHHHhcC-------CcccccccccCHH
Q 016700 300 IVVLNKIDLPEA---RDRLQ----SLTEEILKIG-------CDKVTSETELSSE 339 (384)
Q Consensus 300 ivV~NK~Dl~~~---~e~~~----~l~~~~~~~~-------~~~~sa~t~~gv~ 339 (384)
++|+||+|+... ++..+ .+.+.+..++ +.++|+.++.|++
T Consensus 141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 999999999732 22223 3333444443 4568888888876
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.51 E-value=2.9e-13 Score=141.98 Aligned_cols=121 Identities=23% Similarity=0.194 Sum_probs=76.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC-------cccc---CCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKY---SSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~-------~~~~---~~~i~i~DtPG~~~~a~ 246 (384)
+-|+++|.+|+|||||+++|.+..........+|.+.....+..+.... ...+ ...+.||||||+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~--- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA--- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh---
Confidence 4699999999999999999998754332222334322221121110000 0000 02489999999843
Q ss_pred cccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 247 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 247 ~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
+...+.+.+..||++++|+|+++....+++..+ ..+.. .+.|+++|+||+|+..
T Consensus 82 ----f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----FTNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred ----HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH-----cCCCEEEEEECCCccc
Confidence 344455667889999999999975444444433 23332 3689999999999963
No 213
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.51 E-value=3e-13 Score=142.70 Aligned_cols=162 Identities=22% Similarity=0.238 Sum_probs=106.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCcc---------------CCCCceeecceEEecCCCCCCccccCCceEEEeC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia---------------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~Dt 238 (384)
+.+..|+|+|..++|||||+.+|....-.+. ...+.|+......+.+... +.. ...+.||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-dg~--~~~lnLiDT 81 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-DGE--TYILNLIDT 81 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-CCC--cEEEEEEEC
Confidence 3456899999999999999999986422211 0123344333333322100 001 136899999
Q ss_pred CCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHH
Q 016700 239 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQ 316 (384)
Q Consensus 239 PG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~ 316 (384)
||+.+ +...+.+++..||++|+|||+++....++...|..... .+.|+++|+||+|+.... +..+
T Consensus 82 PGh~d-------F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~~~v~~ 148 (600)
T PRK05433 82 PGHVD-------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADPERVKQ 148 (600)
T ss_pred CCcHH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccHHHHHH
Confidence 99965 45556778899999999999998766666555543322 358999999999997532 2223
Q ss_pred HHHHHHHh--cCCcccccccccCHHHHHHHHHhccCc
Q 016700 317 SLTEEILK--IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 317 ~l~~~~~~--~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
++.+.+.. ..+..+|+.++.|+++++++|.+.+..
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 33332211 014578999999999999999987754
No 214
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=128.38 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=116.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
+.-.+|.|+|.+|||||||+|+|+..+.+. +..+-+|..++.-...++. ..++||||||+.++-.......
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--------~~l~lwDtPG~gdg~~~D~~~r 108 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--------ENLVLWDTPGLGDGKDKDAEHR 108 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--------cceEEecCCCcccchhhhHHHH
Confidence 344678899999999999999999655433 3333333333322222322 3799999999988655555577
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-------------------HH
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------------RD 313 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-------------------~e 313 (384)
..+..++.+.|++++++|+.+++..-+...+++.+..- .++++++|+|.+|.... ++
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 77889999999999999999977666666565554431 35899999999997532 12
Q ss_pred HHHHHHHHHHhc-CCcccccccccCHHHHHHHHHhccCccc
Q 016700 314 RLQSLTEEILKI-GCDKVTSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 314 ~~~~l~~~~~~~-~~~~~sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
+.+.+.+.++.. ++...+.....++++++..+...+....
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 333344444443 3445556778999999999988876543
No 215
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.50 E-value=1.2e-13 Score=132.18 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=84.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC---CC---cc------------CCCCceeecceEEecCCCCCCccccCCceEEEeCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK---PD---IA------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~---~~---ia------------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtP 239 (384)
.|+++|.+|+|||||+++|.... .+ +. ...++|++.....+.... .++.++|||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------~~i~liDTP 72 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--------HRINIIDTP 72 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--------EEEEEEECC
Confidence 48999999999999999996321 11 11 122444544444444332 378999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 317 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~~ 317 (384)
|+.+ +...+.+.++.+|++|+|+|++.....++. .++..+.. .++|+++++||+|+... ....++
T Consensus 73 G~~d-------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~ 139 (270)
T cd01886 73 GHVD-------FTIEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQ 139 (270)
T ss_pred CcHH-------HHHHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 9854 445567888999999999999876544433 34444543 35899999999999753 234555
Q ss_pred HHHHHHh
Q 016700 318 LTEEILK 324 (384)
Q Consensus 318 l~~~~~~ 324 (384)
+.+.+..
T Consensus 140 l~~~l~~ 146 (270)
T cd01886 140 IREKLGA 146 (270)
T ss_pred HHHHhCC
Confidence 5555543
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=99.50 E-value=5.8e-13 Score=140.22 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=105.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc----------------cCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i----------------a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
..+.+|+|+|..++|||||+++|+...-.+ ....+.|+......+.+.. .++.+||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~--------~~inliD 74 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND--------YRINIVD 74 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--------EEEEEEE
Confidence 346789999999999999999998632211 1123444444444444432 3799999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL 315 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~ 315 (384)
|||+.+ +...+..++..+|++|+|+|+++....+.. .++..+.. .+.|.++|+||+|+..+ .+.+
T Consensus 75 TPG~~d-------f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~-----~gip~IVviNKiD~~~a~~~~vl 141 (607)
T PRK10218 75 TPGHAD-------FGGEVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA-----YGLKPIVVINKVDRPGARPDWVV 141 (607)
T ss_pred CCCcch-------hHHHHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH-----cCCCEEEEEECcCCCCCchhHHH
Confidence 999854 445567788999999999999875444333 33333333 36899999999998653 3445
Q ss_pred HHHHHHHHh---------cCCccccccccc----------CHHHHHHHHHhccCcc
Q 016700 316 QSLTEEILK---------IGCDKVTSETEL----------SSEDAVKSLSTEGGEA 352 (384)
Q Consensus 316 ~~l~~~~~~---------~~~~~~sa~t~~----------gv~e~l~~l~~~~~~~ 352 (384)
+++.+.+.. +.+..+|+.++. ++..+++.+.+.+...
T Consensus 142 ~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 142 DQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 555555533 223456777776 5778888888776543
No 217
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5e-14 Score=123.10 Aligned_cols=162 Identities=22% Similarity=0.215 Sum_probs=120.7
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc---c--CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 248 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i---a--~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~ 248 (384)
|.-.-|.|+|+-|||||||+.++-...... . ..-.+|..-+.+++.... ..+.+||.-|+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--------~~l~fwdlgGQ------- 79 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--------APLSFWDLGGQ------- 79 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--------ceeEEEEcCCh-------
Confidence 455679999999999999999886543211 1 122345666777776653 37999999998
Q ss_pred cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----
Q 016700 249 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----- 323 (384)
Q Consensus 249 ~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~----- 323 (384)
+.+...|..++..|++++||||+++++.++......+.+.. ++.+.+.|+++.+||.|+....+ ..++...+.
T Consensus 80 e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~-~~El~~~~~~~e~~ 157 (197)
T KOG0076|consen 80 ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME-AAELDGVFGLAELI 157 (197)
T ss_pred HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh-HHHHHHHhhhhhhc
Confidence 56888899999999999999999998888776665555543 23456899999999999987644 344444333
Q ss_pred ---hcCCcccccccccCHHHHHHHHHhccCcc
Q 016700 324 ---KIGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 324 ---~~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
...+.++++-+++|+++.+.|+...+...
T Consensus 158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 23466889999999999999998877543
No 218
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=4.7e-14 Score=121.39 Aligned_cols=161 Identities=20% Similarity=0.197 Sum_probs=112.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecce--EEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~--g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
-++|+|+|-.-+|||||+-+....+.. ....+|+.... ..+...+ ....+.||||+|+..... ++.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed------~ra~L~IWDTAGQErfHA----LGP 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVED------CRADLHIWDTAGQERFHA----LGP 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhccccccc------ceeeeeeeeccchHhhhc----cCc
Confidence 368999999999999999998866432 11223332111 1121111 123789999999854321 222
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHhcC--Cccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIG--CDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-~~l~~~~~~~~--~~~~ 330 (384)
-|++.++.+|+|+|+++.++++..+.|..||+...- ...-++||.||+||.+.+... ++.....+..+ ..++
T Consensus 81 ---IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eT 155 (218)
T KOG0088|consen 81 ---IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMET 155 (218)
T ss_pred ---eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheec
Confidence 347889999999999999999999999999997653 347789999999997654322 22222333344 4578
Q ss_pred ccccccCHHHHHHHHHhccCccc
Q 016700 331 TSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
+++...|+.++|..|+..+.+..
T Consensus 156 SAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 156 SAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccccccCHHHHHHHHHHHHHHHh
Confidence 99999999999999998876554
No 219
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.47 E-value=8.7e-13 Score=138.87 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=104.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc------c----------CCCCceeecceEEecCCCCCCccccCCceEEEeCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI------A----------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i------a----------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG 240 (384)
..|+|+|..++|||||+++|+...-.+ . ...+.|+......+.+.. .++.||||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--------~kinlIDTPG 73 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--------TKINIVDTPG 73 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--------EEEEEEECCC
Confidence 469999999999999999998532111 1 112344444444444332 3799999999
Q ss_pred CccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHHH
Q 016700 241 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSL 318 (384)
Q Consensus 241 ~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~~l 318 (384)
+.+ +...+.+.+..+|++|+|||++.... .+.+.++..+.. .+.|+++|+||+|+..+ .+..+++
T Consensus 74 h~D-------F~~ev~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei 140 (594)
T TIGR01394 74 HAD-------FGGEVERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEV 140 (594)
T ss_pred HHH-------HHHHHHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHH
Confidence 954 45566778899999999999987533 333445555544 35899999999998643 3445555
Q ss_pred HHHHHhc---------CCccccccccc----------CHHHHHHHHHhccCcc
Q 016700 319 TEEILKI---------GCDKVTSETEL----------SSEDAVKSLSTEGGEA 352 (384)
Q Consensus 319 ~~~~~~~---------~~~~~sa~t~~----------gv~e~l~~l~~~~~~~ 352 (384)
.+.+..+ .+...|+.++. ++..+++.+.+.+...
T Consensus 141 ~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 141 FDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 5555432 22345666664 7899999998877543
No 220
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.47 E-value=6.8e-13 Score=124.74 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=83.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc------cC------------CCCceeecceEEecCCCCCCccccCCceEEEeCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i------a~------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtP 239 (384)
.|+++|.+|+|||||+++|+...-.+ .. ....|+......+... ..++.+||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--------~~~i~liDTP 72 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--------DTKVNLIDTP 72 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--------CEEEEEEeCC
Confidence 48999999999999999998642211 00 0111222222233222 2379999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--hHHHHHH
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARDRLQS 317 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~--~~e~~~~ 317 (384)
|+.+ +...+.++++.+|++++|+|+++.... ....++..+.. .++|+++|+||+|+.. ..+.+++
T Consensus 73 G~~~-------f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~ 139 (237)
T cd04168 73 GHMD-------FIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQE 139 (237)
T ss_pred Cccc-------hHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHH
Confidence 9954 444567788899999999999986543 33445555554 3589999999999975 3455666
Q ss_pred HHHHHHh
Q 016700 318 LTEEILK 324 (384)
Q Consensus 318 l~~~~~~ 324 (384)
+++.+..
T Consensus 140 i~~~~~~ 146 (237)
T cd04168 140 IKEKLSS 146 (237)
T ss_pred HHHHHCC
Confidence 6666543
No 221
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.47 E-value=1.7e-13 Score=131.01 Aligned_cols=124 Identities=24% Similarity=0.292 Sum_probs=80.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc---cC-CC--------------CceeecceEEecCCCCCCccccCCceEEEeCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI---AD-YP--------------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i---a~-~~--------------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtP 239 (384)
.|+|+|.+|||||||+++|....-.+ .. .. ..|+......+.... ..+++||||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--------~~i~liDtP 72 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--------HKINLIDTP 72 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--------EEEEEEECc
Confidence 48999999999999999997532111 00 01 223333333333322 378999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 317 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~~ 317 (384)
|+.+ +...+...+..||++++|+|++......... ++..+.. .+.|+++|+||+|+... .+..+.
T Consensus 73 G~~~-------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~ 139 (268)
T cd04170 73 GYAD-------FVGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE-----AGIPRIIFINKMDRERADFDKTLAA 139 (268)
T ss_pred CHHH-------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCccCCCCHHHHHHH
Confidence 9854 3445667788999999999999865554433 3334443 35899999999998764 233444
Q ss_pred HHHHH
Q 016700 318 LTEEI 322 (384)
Q Consensus 318 l~~~~ 322 (384)
+++.+
T Consensus 140 l~~~~ 144 (268)
T cd04170 140 LQEAF 144 (268)
T ss_pred HHHHh
Confidence 44443
No 222
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.4e-13 Score=113.31 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=111.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|..+|...|||||++..|.-..+.. ...|...++.++.+... .|.+||..|+.. ++..|.
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtykN~--------kfNvwdvGGqd~-------iRplWr 79 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNV--------KFNVWDVGGQDK-------IRPLWR 79 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEeeee--------EEeeeeccCchh-------hhHHHH
Confidence 579999999999999999998665422 12244445556665432 799999999843 677888
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCC
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGC 327 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~--~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~ 327 (384)
+|+..+..+|||+|+++.+..+ ..++||+.. .+++.+.|++|.+||.|++.+.. ..++.+.++ .+.+
T Consensus 80 hYy~gtqglIFV~Dsa~~dr~e---eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~v 155 (180)
T KOG0071|consen 80 HYYTGTQGLIFVVDSADRDRIE---EARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWYV 155 (180)
T ss_pred hhccCCceEEEEEeccchhhHH---HHHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccEe
Confidence 8899999999999998875544 445566543 34567899999999999987633 233433331 2345
Q ss_pred cccccccccCHHHHHHHHHhccC
Q 016700 328 DKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.++++.+++|+.+.+.+|+....
T Consensus 156 qp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 156 QPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred eccccccchhHHHHHHHHHhhcc
Confidence 58889999999999999987653
No 223
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.47 E-value=1e-12 Score=120.83 Aligned_cols=158 Identities=20% Similarity=0.136 Sum_probs=106.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCC-ceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~-tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+++|.+|||||||+++|..........+. .+..+......... ..++.+|||+|+.+ +...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~~~Dt~gq~~-------~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-------NIKLQLWDTAGQEE-------YRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-------EEEEEeecCCCHHH-------HHHHH
Confidence 78999999999999999999987644322221 11222222221110 12589999999954 45556
Q ss_pred HHHcccCCeEEEEeeCCC-CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHH-------------HH
Q 016700 256 LRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT-------------EE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~-------------~~ 321 (384)
..+...++++++|+|.+. ....+..+.|..++....+ ...|+++|.||+|+.........+. ..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 677899999999999998 4455556777777776543 3589999999999986532211111 10
Q ss_pred --HH---hcCCcccccc--cccCHHHHHHHHHhccC
Q 016700 322 --IL---KIGCDKVTSE--TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 322 --~~---~~~~~~~sa~--t~~gv~e~l~~l~~~~~ 350 (384)
.. ...+.++++. +..++.+++..+...+.
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 01 1125577888 89999999988887664
No 224
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=6.6e-14 Score=129.58 Aligned_cols=162 Identities=31% Similarity=0.393 Sum_probs=122.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
++|+++|+|.+|||||+..|++....++.|.|||+....|++.+.. .++.+.|.||++++|..+++.+++..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--------aKiqlldlpgiiegakdgkgrg~qvi 131 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--------AKIQLLDLPGIIEGAKDGKGRGKQVI 131 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--------cceeeecCcchhcccccCCCCccEEE
Confidence 5899999999999999999999988999999999999889887664 38999999999999999999999988
Q ss_pred HHcccCCeEEEEeeCCCCCC--------------------------------------HhHHHHHHHHHHhcCC------
Q 016700 257 RHLRRTRLLVHVIDAAAENP--------------------------------------VNDYRTVKEELRMYNP------ 292 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~--------------------------------------~~~~~~l~~eL~~~~~------ 292 (384)
.-.+.|.++++|+|+-.+-. .-+.......+..|..
T Consensus 132 avartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~ 211 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIA 211 (358)
T ss_pred EEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchhee
Confidence 87888999999999864311 0111222222222210
Q ss_pred ----------------CCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcccccccccCHHHHHHHHHhccC
Q 016700 293 ----------------DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 293 ----------------~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
...-.|.+.++||+|-..- +++.-.+.-....++++.+..+++++++.+.+.+.
T Consensus 212 Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISi----EELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 212 LRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISI----EELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eecCcchhhhhhhhccCceeeeeeeeecccceeee----eccceeeeccceeecccccccchHHHHHHHhhcch
Confidence 0123789999999997653 22322333345668888999999999998887654
No 225
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=7.4e-13 Score=133.94 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=99.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEec--------------CCCCCCc----cccCCceEE
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGA----EKYSSEATL 235 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v~--------------~~~~~~~----~~~~~~i~i 235 (384)
.+|+++|.+++|||||+++|++..... .-....|+........ ....... ......+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 479999999999999999998642110 1011223222111110 0000000 001236899
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD- 313 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e- 313 (384)
+||||+.+ +...+...+..+|++++|+|+++.. ..+..+.+ ..+... ..+|+++|+||+|+...++
T Consensus 85 iDtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~~----gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 85 VDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEII----GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHHc----CCCeEEEEEEccccCCHHHH
Confidence 99999843 5566777788899999999999754 22222222 233322 1357999999999986432
Q ss_pred --HHHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccC
Q 016700 314 --RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 314 --~~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+++.+.+.. ..+.++|+.++.+++++++.|...+.
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 23444444432 23557899999999999999987654
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.46 E-value=1.3e-12 Score=131.73 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=98.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCC----------------ccCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPD----------------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~----------------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|.-.+|+++|.+++|||||+++|++.... .....++|++.....+... ...+.|+|
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iD 81 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVD 81 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEE
Confidence 44567999999999999999999863110 0113455665533333221 23689999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~~ 316 (384)
|||+.+ +.....+.+..+|++++|+|++.....++.+.+ ..+.. .+.| +|+|+||+|+.+.++..+
T Consensus 82 tPGh~~-------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~-----~g~~~~IvviNK~D~~~~~~~~~ 148 (394)
T PRK12736 82 CPGHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ-----VGVPYLVVFLNKVDLVDDEELLE 148 (394)
T ss_pred CCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCEEEEEEEecCCcchHHHHH
Confidence 999843 444556667889999999999875444443333 33433 2577 678999999975444333
Q ss_pred ----HHHHHHHhcCC-------ccccccccc--------CHHHHHHHHHhccC
Q 016700 317 ----SLTEEILKIGC-------DKVTSETEL--------SSEDAVKSLSTEGG 350 (384)
Q Consensus 317 ----~l~~~~~~~~~-------~~~sa~t~~--------gv~e~l~~l~~~~~ 350 (384)
++.+.+...++ .++|+.++. ++.++++.+.+.+.
T Consensus 149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 44444544443 356666652 46777777766553
No 227
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=5.6e-13 Score=135.65 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=93.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPT 223 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~~ 223 (384)
...+|+++|.+++|||||+++|+...-.+ ....+.|++.....+....
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~- 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK- 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-
Confidence 34679999999999999999998522111 1123556666555554432
Q ss_pred CCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCH---hHHHHHHHHHHhcCCCCCCCCEE
Q 016700 224 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFI 300 (384)
Q Consensus 224 ~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~---~~~~~l~~eL~~~~~~l~~~p~i 300 (384)
..+.||||||+.+ +...+...+..+|++++|+|+++.+.. +... ....+..+ ...|++
T Consensus 85 -------~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~-~~~~~~~~----~~~~iI 145 (426)
T TIGR00483 85 -------YEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTRE-HAFLARTL----GINQLI 145 (426)
T ss_pred -------eEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHH-HHHHHHHc----CCCeEE
Confidence 2789999999743 444555667889999999999986322 1111 11122221 235799
Q ss_pred EEEeCCCCCC-hHHH----HHHHHHHHHhcC-------CcccccccccCHHH
Q 016700 301 VVLNKIDLPE-ARDR----LQSLTEEILKIG-------CDKVTSETELSSED 340 (384)
Q Consensus 301 vV~NK~Dl~~-~~e~----~~~l~~~~~~~~-------~~~~sa~t~~gv~e 340 (384)
+|+||+|+.. .++. .+++.+.++..+ +.++|+.++.++.+
T Consensus 146 VviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 146 VAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9999999974 2222 334444454444 35779999999876
No 228
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.46 E-value=1.4e-12 Score=137.86 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=103.0
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCC---ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~---ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
|+++|.+++|||||+++|++.+.. .....+.|++.....+.... +..+.||||||+. .+....
T Consensus 3 i~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe-------~fi~~m 68 (614)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHE-------KFLSNM 68 (614)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHH-------HHHHHH
Confidence 899999999999999999975422 12335667765544443221 1258999999983 344556
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChH---HHHHHHHHHHHhcC-----
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEAR---DRLQSLTEEILKIG----- 326 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~---e~~~~l~~~~~~~~----- 326 (384)
...+..+|++++|||++.....++.+.+ ..+.. .+.| +++|+||+|+.+.. +..+++.+.+...+
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ 142 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK 142 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6778899999999999875444443333 33433 2355 57999999997532 22334444444433
Q ss_pred CcccccccccCHHHHHHHHHhcc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+.++|+.++.|++++++.|....
T Consensus 143 ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 143 LFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhh
Confidence 45789999999999999997644
No 229
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.44 E-value=2.6e-13 Score=114.84 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=110.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+++|..||||||||..|.+.++.- .+ |...+...+.++.. ..+.+||+.|+ ++++..|
T Consensus 18 irilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~-------f~LnvwDiGGq-------r~IRpyW 79 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGT-------FHLNVWDIGGQ-------RGIRPYW 79 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCc-------EEEEEEecCCc-------cccchhh
Confidence 579999999999999999999988753 22 22233334554432 27999999998 6788889
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH-------HHhcCCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-------ILKIGCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~-------~~~~~~~ 328 (384)
..|++..|.+|||||.++...+++...-+-||.. ...+...|+++..||.|+..+.. .+++... .+.+.+.
T Consensus 80 sNYyenvd~lIyVIDS~D~krfeE~~~el~ELle-eeKl~~vpvlIfankQdlltaa~-~eeia~klnl~~lrdRswhIq 157 (185)
T KOG0074|consen 80 SNYYENVDGLIYVIDSTDEKRFEEISEELVELLE-EEKLAEVPVLIFANKQDLLTAAK-VEEIALKLNLAGLRDRSWHIQ 157 (185)
T ss_pred hhhhhccceEEEEEeCCchHhHHHHHHHHHHHhh-hhhhhccceeehhhhhHHHhhcc-hHHHHHhcchhhhhhceEEee
Confidence 9999999999999998876666654333333322 12346799999999999875422 2222221 2345677
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++++-+.+++...++++++...
T Consensus 158 ~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 158 ECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred eCccccccCccCcchhhhcCCC
Confidence 8999999999999999987664
No 230
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.44 E-value=3.8e-13 Score=120.75 Aligned_cols=119 Identities=22% Similarity=0.300 Sum_probs=70.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
..|.|+|++|+|||+|+..|....... ..|.+.++....... .....+.++|+||+.. ++..++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n~~~~~~~------~~~~~~~lvD~PGH~r-------lr~~~~ 67 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENNIAYNVNN------SKGKKLRLVDIPGHPR-------LRSKLL 67 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECCGSS------TCGTCECEEEETT-HC-------CCHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCCceEEeec------CCCCEEEEEECCCcHH-------HHHHHH
Confidence 458999999999999999999874321 133445555432211 1134799999999943 555555
Q ss_pred HH---cccCCeEEEEeeCCCC--CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 257 RH---LRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 257 ~~---i~~ad~il~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.. +..+.+||||||++.. +..+..+.|++.|..-.......|++|++||.|+..+
T Consensus 68 ~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 68 DELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 54 8899999999998741 1112224444444432212246899999999999764
No 231
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.44 E-value=2.6e-12 Score=135.19 Aligned_cols=120 Identities=21% Similarity=0.152 Sum_probs=72.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCC--Cc-------ccc-CCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--GA-------EKY-SSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~--~~-------~~~-~~~i~i~DtPG~~~~a~ 246 (384)
+-|+++|.+|+|||||+++|.+...........|.+.....+...... .. ..+ ...++||||||+.+
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~--- 83 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA--- 83 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH---
Confidence 469999999999999999998764322111122221111111100000 00 000 01379999999854
Q ss_pred cccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 247 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 247 ~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
+...+.+.+..||++++|+|+++....+.+..+ ..+.. .+.|+++|+||+|+.
T Consensus 84 ----f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 ----FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred ----HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcCCc
Confidence 334444567789999999999874333443333 23332 368999999999985
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.44 E-value=1.7e-12 Score=124.24 Aligned_cols=125 Identities=24% Similarity=0.311 Sum_probs=78.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccC---C-----CCce--------------eecceEEecCCCCCCccccCCceE
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---Y-----PFTT--------------LMPNLGRLDGDPTLGAEKYSSEAT 234 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~---~-----~~tT--------------~~p~~g~v~~~~~~~~~~~~~~i~ 234 (384)
..|+|+|.+|+|||||+++|+...-.+.. . ..+| +......+... ..++.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------~~~i~ 74 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------DCVIN 74 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--------CEEEE
Confidence 46999999999999999999753221110 0 0111 11111222222 23799
Q ss_pred EEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--
Q 016700 235 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-- 312 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-- 312 (384)
+|||||+.+ +.......++.+|++|+|+|+++..... ...++..+.. .+.|+++++||+|+..+.
T Consensus 75 liDTPG~~d-------f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-----~~~P~iivvNK~D~~~a~~~ 141 (267)
T cd04169 75 LLDTPGHED-------FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-----RGIPIITFINKLDREGRDPL 141 (267)
T ss_pred EEECCCchH-------HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-----cCCCEEEEEECCccCCCCHH
Confidence 999999854 3344566788999999999998754332 2334444433 368999999999987542
Q ss_pred HHHHHHHHHH
Q 016700 313 DRLQSLTEEI 322 (384)
Q Consensus 313 e~~~~l~~~~ 322 (384)
+.++++++.+
T Consensus 142 ~~~~~l~~~l 151 (267)
T cd04169 142 ELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHH
Confidence 3345555544
No 233
>PRK09866 hypothetical protein; Provisional
Probab=99.44 E-value=4.2e-12 Score=131.60 Aligned_cols=113 Identities=24% Similarity=0.335 Sum_probs=76.0
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.+++|+||||+.... ...+.....+.+..+|+||||+|+.......+ ..+.+.+..... ..|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~--~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K---~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAG--QPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ---SVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCcc--chHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC---CCCEEEEEEcccCCC
Confidence 358999999996521 12255556678999999999999987544444 335556664321 259999999999864
Q ss_pred h----HHHHHHHHH-HHHhc-----CCcccccccccCHHHHHHHHHhcc
Q 016700 311 A----RDRLQSLTE-EILKI-----GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 311 ~----~e~~~~l~~-~~~~~-----~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
. .+.+..+.+ .+... .+.++|+..+.+++++++.|..+-
T Consensus 304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 1 122222222 22221 355889999999999999998754
No 234
>CHL00071 tufA elongation factor Tu
Probab=99.44 E-value=1.4e-12 Score=132.07 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=86.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc----------------cCCCCceeecceEEecCCCCCCccccCCceEEEeC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i----------------a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~Dt 238 (384)
...+|+++|.+|+|||||+++|++....+ ....++|++.....+... ..++.|+||
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iDt 82 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVDC 82 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEEC
Confidence 34679999999999999999998642211 112556665544333322 136899999
Q ss_pred CCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH-
Q 016700 239 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ- 316 (384)
Q Consensus 239 PG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~~- 316 (384)
||+. .+.....+.+..+|++++|+|+......++.+ ++..+.. .+.| +|+|+||+|+....+..+
T Consensus 83 PGh~-------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~ 149 (409)
T CHL00071 83 PGHA-------DYVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ-----VGVPNIVVFLNKEDQVDDEELLEL 149 (409)
T ss_pred CChH-------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEccCCCCHHHHHHH
Confidence 9974 34555567788899999999998754444333 3334443 3578 778999999986544333
Q ss_pred ---HHHHHHHhcC
Q 016700 317 ---SLTEEILKIG 326 (384)
Q Consensus 317 ---~l~~~~~~~~ 326 (384)
++.+.+...+
T Consensus 150 ~~~~l~~~l~~~~ 162 (409)
T CHL00071 150 VELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhC
Confidence 4445555544
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=99.43 E-value=2.3e-12 Score=129.94 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=96.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCC-----CCc-----------cCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAK-----PDI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~-----~~i-----------a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|....|+++|.+++|||||+++|+... ... ....++|++.....+... ...++|+|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVD 81 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEE
Confidence 445679999999999999999998621 110 113455655433333222 13689999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i-vV~NK~Dl~~~~e~~~ 316 (384)
|||+. .+.....+.+..+|++++|+|+......+..+ ++..+.. .+.|.+ +|+||+|+...++..+
T Consensus 82 tPGh~-------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e-~l~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~ 148 (396)
T PRK12735 82 CPGHA-------DYVKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCCHH-------HHHHHHHhhhccCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEEEecCCcchHHHHH
Confidence 99984 24455566678899999999998754333333 3333433 357855 6799999975433222
Q ss_pred ----HHHHHHHhcCC-------cccccccc----------cCHHHHHHHHHhcc
Q 016700 317 ----SLTEEILKIGC-------DKVTSETE----------LSSEDAVKSLSTEG 349 (384)
Q Consensus 317 ----~l~~~~~~~~~-------~~~sa~t~----------~gv~e~l~~l~~~~ 349 (384)
++.+.+..+++ .++|+.++ .++.++++.|...+
T Consensus 149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 34444544432 35566555 25667777776544
No 236
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.43 E-value=7.7e-13 Score=120.84 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=110.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|+|||+|+.++..... +..|..|.-+.....+..+.. . -.+.|+||+|..+. ...-.
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~~----~--~~l~ilDt~g~~~~-------~~~~~ 69 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDGE----V--CMLEILDTAGQEEF-------SAMRD 69 (196)
T ss_pred eEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECCE----E--EEEEEEcCCCcccC-------hHHHH
Confidence 5799999999999999999887643 223333332323333322211 1 25789999996443 22234
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa~ 333 (384)
.++..+|++++|+++++..+++....+++.+. ........|+++|+||+|+....+. .++-......+ .+.++|++
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~-r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak 148 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQIL-RVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAK 148 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHH-HhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeecc
Confidence 56788999999999999999999999998883 2233345899999999999864322 11222222333 46689999
Q ss_pred cccCHHHHHHHHHhccCc
Q 016700 334 TELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~~ 351 (384)
...+++++|..|......
T Consensus 149 ~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 149 LNYNVDEVFYELVREIRL 166 (196)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999876543
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.43 E-value=2.5e-12 Score=118.70 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=73.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC----------C---------CCceeecceEEecCCCCCCccccCCceEEEeC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~----------~---------~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~Dt 238 (384)
+|+|+|.+++|||||+++|+.....+.. + .+.|+......+.+... .. ....+.+|||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-~~--~~~~i~iiDt 78 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-KG--KSYLFNIIDT 78 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-CC--CEEEEEEEEC
Confidence 5899999999999999999865322210 0 11122222111111100 00 1136899999
Q ss_pred CCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 239 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 239 PG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
||+.+ +......++..+|++|+|+|+++....... .++..+.. .+.|+++|+||+|+.
T Consensus 79 pG~~~-------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVN-------FMDEVAAALRLSDGVVLVVDVVEGVTSNTE-RLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcc-------hHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECcccC
Confidence 99854 344566778899999999999876554432 23333322 258999999999975
No 238
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.43 E-value=2.6e-12 Score=119.57 Aligned_cols=119 Identities=19% Similarity=0.160 Sum_probs=74.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC-C---------------CCceeecceEEecCCCC--CCccccCCceEEEeCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD-Y---------------PFTTLMPNLGRLDGDPT--LGAEKYSSEATLADLP 239 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~-~---------------~~tT~~p~~g~v~~~~~--~~~~~~~~~i~i~DtP 239 (384)
.|+++|..++|||||+.+|....-.+.. . .+.|+......+.+... .........+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999999754322110 0 11122211111111100 0000012368999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
|+.+ +......++..||++++|+|++.....+....+. .... .+.|+++|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCCcc
Confidence 9965 4556677889999999999999876555543333 3322 257999999999986
No 239
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.42 E-value=2.2e-12 Score=130.69 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=101.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC---CccCCCCceeecceEEecCCC--------CC------C--c--cccCCceE
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTLMPNLGRLDGDP--------TL------G--A--EKYSSEAT 234 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~---~ia~~~~tT~~p~~g~v~~~~--------~~------~--~--~~~~~~i~ 234 (384)
-.+|+++|..++|||||+.+|++... ...-..+.|+........... .. . . ..+...+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 35799999999999999999976411 111123445543322211100 00 0 0 00113689
Q ss_pred EEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH
Q 016700 235 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 313 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e 313 (384)
||||||+. .+...++..+..+|++++|+|++++. ..+....+ ..+..+ ..+|+++|+||+|+....+
T Consensus 89 liDtPG~~-------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~----~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 89 FVDAPGHE-------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII----GIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EEECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEEeeccccchh
Confidence 99999973 35556667777889999999999754 23333322 333332 1257899999999976433
Q ss_pred H---HHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccC
Q 016700 314 R---LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 314 ~---~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
. .+++.+.+.. ..+.++|+.++.+++++++.|...+.
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 2 2334444332 23457899999999999999987654
No 240
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.42 E-value=5.9e-12 Score=117.41 Aligned_cols=103 Identities=22% Similarity=0.090 Sum_probs=68.0
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcc--cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~--~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
..+.++||||+.+ +.....+.+. .+|++++|+|+.......+.. +...+.. .++|+++|+||+|+
T Consensus 84 ~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~-~l~~l~~-----~~ip~ivvvNK~D~ 150 (224)
T cd04165 84 KLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKE-HLGLALA-----LNIPVFVVVTKIDL 150 (224)
T ss_pred cEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECccc
Confidence 3689999999843 3444455554 689999999998765544433 3344443 35899999999998
Q ss_pred CChHH---HHHHHHHHHHhc----------------------------CCcccccccccCHHHHHHHHH
Q 016700 309 PEARD---RLQSLTEEILKI----------------------------GCDKVTSETELSSEDAVKSLS 346 (384)
Q Consensus 309 ~~~~e---~~~~l~~~~~~~----------------------------~~~~~sa~t~~gv~e~l~~l~ 346 (384)
....+ ..+++.+.+... .+..+|+.++.|++++...|.
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 75432 233333444311 334568888888888887764
No 241
>PLN03127 Elongation factor Tu; Provisional
Probab=99.41 E-value=7.4e-12 Score=127.92 Aligned_cols=119 Identities=21% Similarity=0.226 Sum_probs=79.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcC------CCC----------ccCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHA------KPD----------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~------~~~----------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|....|+++|.+++|||||+++|++. ... .....++|++.....+.... .+++|+|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--------~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--------RHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--------eEEEEEE
Confidence 55678999999999999999999732 111 11235667766544443321 3689999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD 313 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e 313 (384)
|||+.+ +.......+..+|++++|+|+......++.+ +...+.. .+.| +|+|+||+|+.+.++
T Consensus 131 tPGh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt~e-~l~~~~~-----~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 131 CPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ-----VGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCCccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEEEeeccCCHHH
Confidence 999843 4444455567799999999998754444333 3334443 3578 578999999986444
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.41 E-value=5.8e-12 Score=127.04 Aligned_cols=155 Identities=20% Similarity=0.203 Sum_probs=97.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCC----------------ccCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPD----------------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~----------------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
+...+|+++|.+++|||||+++|+..... .....++|++.....+... ...++++|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVD 81 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEE
Confidence 44567999999999999999999863110 0114566666544333322 13689999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i-vV~NK~Dl~~~~e~~~ 316 (384)
|||+.+ +.......+..+|++++|+|+......++.+ ++..+.. .+.|.+ +++||+|+...++..+
T Consensus 82 tPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~-~~~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~ 148 (396)
T PRK00049 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHHHH-HHHHHHH-----cCCCEEEEEEeecCCcchHHHHH
Confidence 999842 4444556678899999999998754433333 3344443 357876 6899999975433332
Q ss_pred ----HHHHHHHhcCC-------ccccccccc----------CHHHHHHHHHhcc
Q 016700 317 ----SLTEEILKIGC-------DKVTSETEL----------SSEDAVKSLSTEG 349 (384)
Q Consensus 317 ----~l~~~~~~~~~-------~~~sa~t~~----------gv~e~l~~l~~~~ 349 (384)
++.+.+..+++ .++++.++. ++..+++.|.+.+
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 44445554443 244554432 4556666666543
No 243
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.9e-12 Score=109.53 Aligned_cols=159 Identities=20% Similarity=0.173 Sum_probs=112.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceE--EecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g--~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
..+.+-.++|..++|||.|+..++..+. .++.|.| +....| .++... ...+++||||+|+ +.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkf-madcpht-igvefgtriievsg------qkiklqiwdtagq-------erf 73 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHT-IGVEFGTRIIEVSG------QKIKLQIWDTAGQ-------ERF 73 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHH-hhcCCcc-cceecceeEEEecC------cEEEEEEeecccH-------HHH
Confidence 4577889999999999999999987642 3444543 211111 222221 1237899999998 446
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CD 328 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~~--~~ 328 (384)
+.-...+++.+...++|+|++.+.+...+..|+..-+..-. .+..++++.||.||...++. .++.++..++.+ +.
T Consensus 74 ravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~faeengl~fl 151 (215)
T KOG0097|consen 74 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFL 151 (215)
T ss_pred HHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEE
Confidence 66667788999999999999998888888888766554321 24568899999999865432 344444445555 45
Q ss_pred ccccccccCHHHHHHHHHhcc
Q 016700 329 KVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+++++++.++++.|-+.+..+
T Consensus 152 e~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 152 EASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred EecccccCcHHHHHHHHHHHH
Confidence 789999999999998877655
No 244
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.40 E-value=1.7e-12 Score=122.86 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=82.9
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc---
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--- 247 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--- 247 (384)
++..-.+|+|+|.+|||||||+|+|++.... +..+..+|............ ..+.++||||+.+....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--------~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--------FKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--------eEEEEEECCCcCcchhhHHH
Confidence 4455679999999999999999999998753 46666677666554433222 37999999999876321
Q ss_pred ccchhHHHHHHcc--cCCeEEEEeeCCCC-CCHhHHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCC
Q 016700 248 GKGLGRNFLRHLR--RTRLLVHVIDAAAE-NPVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 248 ~~gl~~~fl~~i~--~ad~il~VvD~s~~-~~~~~~~~l~~eL~~-~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.........++++ ..|+++||..++.. ....+. .+.+.+.. +... ...++++|+||+|...
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~llk~I~e~fG~~-i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDL-PLLRAITDSFGPS-IWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHH-HHHHHHHHHhChh-hHhCEEEEEeCCccCC
Confidence 1112222333443 56889999766543 223332 34444443 3322 2367999999999754
No 245
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.40 E-value=6.5e-12 Score=126.61 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=84.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC------C----------ccCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP------D----------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~------~----------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|....|+++|..++|||||+++|++... . .....++|++.....+... ...+.|||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liD 81 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVD 81 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEE
Confidence 4456799999999999999999974210 0 0112566666543333221 13689999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i-vV~NK~Dl~~~~e~~~ 316 (384)
|||+.+ +...+.+.+..+|++++|+|+......++.+.+ ..+.. .+.|.+ +|+||+|+.+.++..+
T Consensus 82 tpGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~ 148 (394)
T TIGR00485 82 CPGHAD-------YVKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (394)
T ss_pred CCchHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEEecccCCHHHHHH
Confidence 999843 445556667789999999999875444443333 33433 246755 6899999986444332
Q ss_pred ----HHHHHHHhcC
Q 016700 317 ----SLTEEILKIG 326 (384)
Q Consensus 317 ----~l~~~~~~~~ 326 (384)
++.+.+..++
T Consensus 149 ~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 149 LVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHHhcC
Confidence 4445555544
No 246
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=8.5e-12 Score=110.44 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=108.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-------cCCCC---ceeecceEEecCCCCCCccccCCceEEEeCCCCcccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-------a~~~~---tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
..+|+++|..++||||++.+++...+-+ ..+-. ||.-...|.+.+... ..+.++||||+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-------~~v~LfgtPGq---- 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-------TGVHLFGTPGQ---- 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-------ceEEEecCCCc----
Confidence 4689999999999999999999775311 12223 666666666655431 37999999999
Q ss_pred ccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHHHHHHH-
Q 016700 246 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSLTEEI- 322 (384)
Q Consensus 246 ~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~~l~~~~- 322 (384)
+.+...|.-..+.+..+++|+|.+.+..+.+ ..+.+.+.... ..|++|++||.||..+ .+.+.++.+.-
T Consensus 79 ---~RF~fm~~~l~~ga~gaivlVDss~~~~~~a-~~ii~f~~~~~----~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~ 150 (187)
T COG2229 79 ---ERFKFMWEILSRGAVGAIVLVDSSRPITFHA-EEIIDFLTSRN----PIPVVVAINKQDLFDALPPEKIREALKLEL 150 (187)
T ss_pred ---HHHHHHHHHHhCCcceEEEEEecCCCcchHH-HHHHHHHhhcc----CCCEEEEeeccccCCCCCHHHHHHHHHhcc
Confidence 4567777777889999999999998877733 34445555422 2899999999999864 33333333322
Q ss_pred HhcCCcccccccccCHHHHHHHHHhc
Q 016700 323 LKIGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 323 ~~~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
........++..+++..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHhh
Confidence 23444566777788888888887765
No 247
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=5e-12 Score=115.37 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=87.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cC----CCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~----~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
.+|+|+|.+|||||||+|+|++..... .. ...+|... ..+.... ...+.+|||||+.+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~-------~~~l~l~DtpG~~~~~~~---- 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPK-------FPNVTLWDLPGIGSTAFP---- 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCC-------CCCceEEeCCCCCcccCC----
Confidence 479999999999999999999854211 10 00112111 1111110 136899999999653221
Q ss_pred hHHHHHH--cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH------------HHHHH
Q 016700 252 GRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR------------DRLQS 317 (384)
Q Consensus 252 ~~~fl~~--i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~------------e~~~~ 317 (384)
...+++. +..+|++++|.|.. ....+ ..+.+++..+ .+|+++|+||+|+.... +.++.
T Consensus 69 ~~~~l~~~~~~~~d~~l~v~~~~--~~~~d-~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~ 140 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISSTR--FSSND-VKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE 140 (197)
T ss_pred HHHHHHHhCccCcCEEEEEeCCC--CCHHH-HHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHH
Confidence 1223333 46789988885432 22222 3445566553 58999999999985321 22333
Q ss_pred HHHHHH----hcC-----Ccccccc--cccCHHHHHHHHHhccCc
Q 016700 318 LTEEIL----KIG-----CDKVTSE--TELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 318 l~~~~~----~~~-----~~~~sa~--t~~gv~e~l~~l~~~~~~ 351 (384)
+.+.+. ..+ +..+|+. .+.++..+.+.|...+.+
T Consensus 141 i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 141 IRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 333332 212 2233444 356777777777766654
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.37 E-value=4e-12 Score=135.43 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=90.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCcc-----------CCCCc----------------------eeecceEEecC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-----------DYPFT----------------------TLMPNLGRLDG 220 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia-----------~~~~t----------------------T~~p~~g~v~~ 220 (384)
+...+|+++|.+|+|||||+++|+...-.+. ...++ |++.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4456799999999999999999986543331 01233 23333333322
Q ss_pred CCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE
Q 016700 221 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 300 (384)
Q Consensus 221 ~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i 300 (384)
. ..+++|+||||+.+ +.......+..+|++++|+|+......++.+.+ ..+..+ ..+|++
T Consensus 102 ~--------~~~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----~~~~ii 161 (632)
T PRK05506 102 P--------KRKFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----GIRHVV 161 (632)
T ss_pred C--------CceEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----CCCeEE
Confidence 2 23789999999843 334445567889999999999765333322222 223322 136789
Q ss_pred EEEeCCCCCC-hHHHHHHHHH----HHHhcC-----CcccccccccCHHH
Q 016700 301 VVLNKIDLPE-ARDRLQSLTE----EILKIG-----CDKVTSETELSSED 340 (384)
Q Consensus 301 vV~NK~Dl~~-~~e~~~~l~~----~~~~~~-----~~~~sa~t~~gv~e 340 (384)
+|+||+|+.. .++.++++.+ .+..++ +.++|+.++.++.+
T Consensus 162 vvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 162 LAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9999999974 2333333333 333444 34678889988764
No 249
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-11 Score=106.24 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=121.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+|+++|.-++|||++|..|.-.+..+ .++..|-.+...+.++.+. .....+.|.||.|+..+..+ +-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~r-----garE~l~lyDTaGlq~~~~e---Lp- 78 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDR-----GAREQLRLYDTAGLQGGQQE---LP- 78 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCC-----ChhheEEEeecccccCchhh---hh-
Confidence 34679999999999999999998655444 2333233344445554332 12347999999999765211 21
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH---HhcCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~---~~~~~~~~ 330 (384)
..++.-+|++++|+|..++++++.+..+..++.... +....|+++++||+|+.+..+......+.+ ++..+.++
T Consensus 79 --rhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eV 155 (198)
T KOG3883|consen 79 --RHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEV 155 (198)
T ss_pred --HhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEE
Confidence 234677999999999999999999999999998865 345699999999999976555444444444 34567788
Q ss_pred ccccccCHHHHHHHHHhccCccc
Q 016700 331 TSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
.+.....+-+.|..++.++....
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCc
Confidence 88899999999999999876543
No 250
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.37 E-value=6e-12 Score=135.33 Aligned_cols=128 Identities=21% Similarity=0.218 Sum_probs=86.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC---Cc---cC------------CCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~---~i---a~------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
..+.+|+|+|.+|+|||||+++|....- .+ .+ ..++|++.....+.+.. .++++
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--------~~i~l 79 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--------HRINI 79 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--------eEEEE
Confidence 4466899999999999999999974321 11 11 23455555555554432 37999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--H
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--D 313 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e 313 (384)
|||||+.+ +.....+.++.+|++|+|+|+++....++.. ++..+.. .+.|+++|+||+|+..+. +
T Consensus 80 iDTPG~~~-------~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~ivviNK~D~~~~~~~~ 146 (689)
T TIGR00484 80 IDTPGHVD-------FTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR-----YEVPRIAFVNKMDKTGANFLR 146 (689)
T ss_pred EECCCCcc-------hhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHHH
Confidence 99999965 2334567788999999999998865554433 3334443 358999999999998532 3
Q ss_pred HHHHHHHHH
Q 016700 314 RLQSLTEEI 322 (384)
Q Consensus 314 ~~~~l~~~~ 322 (384)
.++.+.+.+
T Consensus 147 ~~~~i~~~l 155 (689)
T TIGR00484 147 VVNQIKQRL 155 (689)
T ss_pred HHHHHHHHh
Confidence 344444433
No 251
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.37 E-value=4.8e-12 Score=130.27 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=91.5
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccC-----------CCC----------------------ceeecceEEecC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPF----------------------TTLMPNLGRLDG 220 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~-----------~~~----------------------tT~~p~~g~v~~ 220 (384)
+...+|+++|.+++|||||+++|+...-.+.. ..+ .|++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 55689999999999999999999754322211 012 233333333332
Q ss_pred CCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE
Q 016700 221 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 300 (384)
Q Consensus 221 ~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i 300 (384)
. ..+++|+||||+. .+.......+..+|++|+|+|+......++.+.+ ..+.... .+|++
T Consensus 105 ~--------~~~i~~iDTPGh~-------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg----~~~iI 164 (474)
T PRK05124 105 E--------KRKFIIADTPGHE-------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG----IKHLV 164 (474)
T ss_pred C--------CcEEEEEECCCcH-------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC----CCceE
Confidence 2 1378999999973 2444555667899999999999865332222211 1222211 25789
Q ss_pred EEEeCCCCCCh-HHHHHHHHHHH----HhcC------CcccccccccCHHHH
Q 016700 301 VVLNKIDLPEA-RDRLQSLTEEI----LKIG------CDKVTSETELSSEDA 341 (384)
Q Consensus 301 vV~NK~Dl~~~-~e~~~~l~~~~----~~~~------~~~~sa~t~~gv~e~ 341 (384)
+|+||+|+... ++.++++.+.+ ..++ +.++|+.++.++.+.
T Consensus 165 vvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 165 VAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99999999742 33344444333 2222 447788889888653
No 252
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.35 E-value=2.9e-13 Score=113.50 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=108.0
Q ss_pred EEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHH
Q 016700 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 258 (384)
Q Consensus 181 lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~ 258 (384)
++|.+.+|||.|+-++.....- +..-..|+ +-.-..++.++ ...++++|||+|+ +.++.-...+
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~------~kvklqiwdtagq-------erfrsvt~ay 67 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDD------KKVKLQIWDTAGQ-------ERFRSVTHAY 67 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCC------cEEEEEEeeccch-------HHHhhhhHhh
Confidence 6899999999998766533211 11111122 11111222221 1237999999998 4566667788
Q ss_pred cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccccc
Q 016700 259 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSET 334 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa~t 334 (384)
++.+|++++|+|+.+..+++..+.|+.++++|.. ....++++.||+|+..++ +.-+.+.+. ..+.+.++|+++
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k--~~v~l~llgnk~d~a~er~v~~ddg~kla~~-y~ipfmetsakt 144 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAK--EAVALMLLGNKCDLAHERAVKRDDGEKLAEA-YGIPFMETSAKT 144 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHH--hhHhHhhhccccccchhhccccchHHHHHHH-HCCCceeccccc
Confidence 9999999999999999999999999999999975 346789999999996432 222333322 335677899999
Q ss_pred ccCHHHHHHHHHhccC
Q 016700 335 ELSSEDAVKSLSTEGG 350 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~~ 350 (384)
+-+++-.|-.|++++.
T Consensus 145 g~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 145 GFNVDLAFLAIAEELK 160 (192)
T ss_pred cccHhHHHHHHHHHHH
Confidence 9999999999988764
No 253
>PLN03126 Elongation factor Tu; Provisional
Probab=99.35 E-value=1.1e-11 Score=127.55 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=86.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc----------------cCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i----------------a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|...+|+++|.+++|||||+++|+.....+ ....+.|++.....+... ...+.|+|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liD 150 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVD 150 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEE
Confidence 445679999999999999999998532111 112344554433333322 23789999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~~ 316 (384)
|||+.+ +.......+..+|++++|+|+......+..+ ++..+.. .++| +++++||+|+...++..+
T Consensus 151 tPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~ 217 (478)
T PLN03126 151 CPGHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ-----VGVPNMVVFLNKQDQVDDEELLE 217 (478)
T ss_pred CCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCeEEEEEecccccCHHHHHH
Confidence 999854 4445566678899999999998764444433 3334443 3577 778999999986443333
Q ss_pred ----HHHHHHHhcCC
Q 016700 317 ----SLTEEILKIGC 327 (384)
Q Consensus 317 ----~l~~~~~~~~~ 327 (384)
++.+.+..+++
T Consensus 218 ~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 218 LVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHHHhcCC
Confidence 44445555443
No 254
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.34 E-value=1.1e-11 Score=125.31 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=88.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC---------------------------------CCCceeecceEEecCCCCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------------------------YPFTTLMPNLGRLDGDPTL 224 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~---------------------------------~~~tT~~p~~g~v~~~~~~ 224 (384)
+|+++|.+++|||||+.+|....-.+.. .-+.|++.....+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 6999999999999999999743221110 1122344433333322
Q ss_pred CccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 016700 225 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 304 (384)
Q Consensus 225 ~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~N 304 (384)
..++.|+||||+.+ +.......+..+|++|+|+|+......++.+.+ ..+..+. .+++++|+|
T Consensus 79 -----~~~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~----~~~iivviN 141 (406)
T TIGR02034 79 -----KRKFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG----IRHVVLAVN 141 (406)
T ss_pred -----CeEEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC----CCcEEEEEE
Confidence 23789999999843 444455667899999999999875433333222 2333221 256899999
Q ss_pred CCCCCCh-HHHHHHHHHH----HHhcC-----CcccccccccCHHH
Q 016700 305 KIDLPEA-RDRLQSLTEE----ILKIG-----CDKVTSETELSSED 340 (384)
Q Consensus 305 K~Dl~~~-~e~~~~l~~~----~~~~~-----~~~~sa~t~~gv~e 340 (384)
|+|+... .+.++++.+. +..++ +.++|+.++.++.+
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9999742 2333333333 33333 34678888888775
No 255
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1e-11 Score=125.31 Aligned_cols=163 Identities=19% Similarity=0.172 Sum_probs=117.6
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC---------------ccCCCCceeecceEEecCCCCCCccccCCceEEE
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD---------------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 236 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~---------------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~ 236 (384)
....+..++||-.-.-|||||..+|....-. +....+.|+..+...+.+.. +.. ..+.++
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~--ylLNLI 130 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQS--YLLNLI 130 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCc--eEEEee
Confidence 3456778999999999999999999753221 23445677766666665443 111 268999
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HH
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR 314 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~ 314 (384)
||||+.+ |+....+.+.-|+.+|+|||++.....+....++-.++ .+..+|.|+||+|++.++ ..
T Consensus 131 DTPGHvD-------Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V 197 (650)
T KOG0462|consen 131 DTPGHVD-------FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERV 197 (650)
T ss_pred cCCCccc-------ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHH
Confidence 9999976 44556677888999999999999877777766666655 357789999999998652 23
Q ss_pred HHHHHHHHHhc--CCcccccccccCHHHHHHHHHhccCcc
Q 016700 315 LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 315 ~~~l~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
...+.+.+... .+..+|++++.+++++++++.+++...
T Consensus 198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 33333333322 244679999999999999999988653
No 256
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.33 E-value=7.3e-12 Score=120.98 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=78.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+|+|+|.+|+|||||+|+|++.+... +.+..+|..+........ +.++.|+||||+.+....++....
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~~ 108 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAVN 108 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHHH
Confidence 34589999999999999999999987643 555555555544333322 237999999999875332222222
Q ss_pred HHHHHc--ccCCeEEEEeeCCCC-CCHhHHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCC
Q 016700 254 NFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 254 ~fl~~i--~~ad~il~VvD~s~~-~~~~~~~~l~~eL~-~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
....++ ...|++|||.+.+.. ....+.. +.+.+. .|... ...++|||+|++|...
T Consensus 109 ~ik~~l~~~g~DvVLyV~rLD~~R~~~~Dkq-lLk~Iqe~FG~~-iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 109 IIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQ-VIRAITDSFGKD-IWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHhhcCCCCEEEEEeccCcccCCHHHHH-HHHHHHHHhhhh-hhccEEEEEECCccCC
Confidence 222222 258999999655432 2222222 333333 33322 2468999999999763
No 257
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.32 E-value=1.1e-11 Score=109.29 Aligned_cols=68 Identities=26% Similarity=0.278 Sum_probs=49.0
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
..+.|+||||+.+...... ..+.+++..||++|||++++......+...+.+.+... ...+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence 3599999999976443322 55667789999999999999866656666666555532 34599999995
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.32 E-value=1.2e-11 Score=132.98 Aligned_cols=128 Identities=20% Similarity=0.187 Sum_probs=87.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC---Cc---c------------CCCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~---~i---a------------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
..+.+|+|+|.+|+|||||+++|....- .+ . ...++|++.....+.... .++++
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------~~i~l 77 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--------HRINI 77 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--------EEEEE
Confidence 3567899999999999999999974211 11 1 134455555555554432 37999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HH
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 313 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e 313 (384)
+||||+.+ +...+.+.+..+|++|+|+|+......++.. ++..+.. .++|+|+++||+|+... .+
T Consensus 78 iDTPG~~~-------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~-----~~~p~iv~iNK~D~~~~~~~~ 144 (691)
T PRK12739 78 IDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK-----YGVPRIVFVNKMDRIGADFFR 144 (691)
T ss_pred EcCCCHHH-------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHHH
Confidence 99999854 3445778889999999999998765544433 4444443 35899999999999853 23
Q ss_pred HHHHHHHHH
Q 016700 314 RLQSLTEEI 322 (384)
Q Consensus 314 ~~~~l~~~~ 322 (384)
.++++.+.+
T Consensus 145 ~~~~i~~~l 153 (691)
T PRK12739 145 SVEQIKDRL 153 (691)
T ss_pred HHHHHHHHh
Confidence 344444443
No 259
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.31 E-value=2.6e-11 Score=126.23 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=82.9
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC------cc-C--CC-------------CceeecceEEecCCCCCCcccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD------IA-D--YP-------------FTTLMPNLGRLDGDPTLGAEKY 229 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~------ia-~--~~-------------~tT~~p~~g~v~~~~~~~~~~~ 229 (384)
|...+..|+|+|.+++|||||+++|.-..-. +. . .. +.|+......+.+.
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-------- 78 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-------- 78 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--------
Confidence 5566788999999999999999998532111 11 0 00 11122222223222
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
...+.+|||||+.+ +.....+.+..+|++|+|+|++..... ....+++.+.. .+.|+++++||+|+.
T Consensus 79 ~~~inliDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 DCLVNLLDTPGHED-------FSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred CeEEEEEECCChhh-------HHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 23789999999943 444566778899999999999875332 23344444433 368999999999986
Q ss_pred C--hHHHHHHHHHHHH
Q 016700 310 E--ARDRLQSLTEEIL 323 (384)
Q Consensus 310 ~--~~e~~~~l~~~~~ 323 (384)
. ..+.++++.+.+.
T Consensus 146 ~~~~~~ll~~i~~~l~ 161 (527)
T TIGR00503 146 IRDPLELLDEVENELK 161 (527)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 4 3344555555443
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.31 E-value=2e-11 Score=131.38 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=87.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHc---CCCCc---c------------CCCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITH---AKPDI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~---~~~~i---a------------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
..+.+|+|+|.+|+|||||+++|.. ....+ . ...++|++.....+.... ..+++
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--------~~~~l 79 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--------HRINI 79 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--------eEEEE
Confidence 4567899999999999999999963 21111 1 234566666555554432 37999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--H
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--D 313 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e 313 (384)
+||||+.+ +.....+.+..+|++|+|+|+......++.. ++..+.. .++|+++++||+|+.... +
T Consensus 80 iDTPG~~~-------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~-----~~~p~iv~vNK~D~~~~~~~~ 146 (693)
T PRK00007 80 IDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK-----YKVPRIAFVNKMDRTGADFYR 146 (693)
T ss_pred EeCCCcHH-------HHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHHH
Confidence 99999865 3334567788899999999998765555544 3344443 358999999999997532 3
Q ss_pred HHHHHHHHH
Q 016700 314 RLQSLTEEI 322 (384)
Q Consensus 314 ~~~~l~~~~ 322 (384)
.++.+.+.+
T Consensus 147 ~~~~i~~~l 155 (693)
T PRK00007 147 VVEQIKDRL 155 (693)
T ss_pred HHHHHHHHh
Confidence 344444433
No 261
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.31 E-value=2e-11 Score=126.93 Aligned_cols=130 Identities=21% Similarity=0.261 Sum_probs=83.1
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCc---cC------CCCc-------------eeecceEEecCCCCCCcccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---AD------YPFT-------------TLMPNLGRLDGDPTLGAEKY 229 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i---a~------~~~t-------------T~~p~~g~v~~~~~~~~~~~ 229 (384)
+...+..|+|+|.+++|||||+++|+...-.+ .. ...+ |+......+.+..
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~------- 78 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD------- 78 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC-------
Confidence 45667789999999999999999996321111 11 0111 1122222232221
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
..+.+|||||+.+ +.....+++..+|++|+|+|+++..... .+.++..... .+.|+++++||+|+.
T Consensus 79 -~~inliDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 79 -CLINLLDTPGHED-------FSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred -EEEEEEECCCchh-------hHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 3699999999854 3445667788999999999998754333 3344444433 368999999999987
Q ss_pred Ch--HHHHHHHHHHH
Q 016700 310 EA--RDRLQSLTEEI 322 (384)
Q Consensus 310 ~~--~e~~~~l~~~~ 322 (384)
.. .+.++++.+.+
T Consensus 145 ~a~~~~~l~~i~~~l 159 (526)
T PRK00741 145 GREPLELLDEIEEVL 159 (526)
T ss_pred ccCHHHHHHHHHHHh
Confidence 53 23345555444
No 262
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.6e-12 Score=110.79 Aligned_cols=166 Identities=17% Similarity=0.082 Sum_probs=107.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCC---CCCCccccCCceEEEeCCCCcccccccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGD---PTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~---~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
.+.+...+|.+++||||||.+.+..+... .-.+|+ +.....+-+. +......+...+++|||+|+.
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE------- 78 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE------- 78 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH-------
Confidence 34566778999999999999888654211 011121 1111111111 111111222358999999984
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH-HHhc--C
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-ILKI--G 326 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~-~~~~--~ 326 (384)
.++...-..++.|-.+|+++|.++..++-..+.|+..|+...- ..+.-++++.||+||+..+..-++.... ..++ .
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP 157 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP 157 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC
Confidence 3444444446778899999999999899888999888874321 1134489999999998765443333333 3344 4
Q ss_pred CcccccccccCHHHHHHHHHhccC
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.++|+-++.++++.++.|.+.+.
T Consensus 158 YfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 158 YFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred eeeeccccCcCHHHHHHHHHHHHH
Confidence 568899999999999988877654
No 263
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.30 E-value=2.2e-11 Score=113.80 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=94.5
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
||+|+|+.++||||+.+.+...-+ .-..+...|.++....+..... -.+.+||.||+...... .+...-.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-------~~l~iwD~pGq~~~~~~--~~~~~~~ 71 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-------LPLNIWDCPGQDDFMEN--YFNSQRE 71 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-------CEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-------cEEEEEEcCCccccccc--cccccHH
Confidence 689999999999999999997653 3355666777777766643322 26899999999754221 1111122
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHH---HHhcCCCCCCCCEEEEEeCCCCCChHHH-------HHHHHHHHHhcC
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEE---LRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG 326 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~e---L~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------~~~l~~~~~~~~ 326 (384)
.-++.++++|||+|+...+..+++..+... +..++| +..+.+.++|+|+.....+ .+.+.+.+...+
T Consensus 72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 335889999999999976666666555544 445665 6779999999999865432 333344444444
Q ss_pred -----CcccccccccCHHHHHHHHHhccC
Q 016700 327 -----CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 -----~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+..+|+-. ..+-+++..+...+.
T Consensus 149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 149 IEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp -TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred ccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 22334333 456666666665554
No 264
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=2e-11 Score=115.95 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=76.6
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHccc--CCeEEEEeeCCCCCCHhHHHHHH--HHHHhcCCCCCCCCEEEEEeCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVK--EELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~--ad~il~VvD~s~~~~~~~~~~l~--~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
..++++||||+.+.... ......+.+++++ +++++||+|++......++.... ....... .++|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhH
Confidence 36999999999876544 5566777888877 89999999998755444443322 1111111 369999999999
Q ss_pred CCCChHHHHHHHHH----------------------------HHHhcC----CcccccccccCHHHHHHHHHhccC
Q 016700 307 DLPEARDRLQSLTE----------------------------EILKIG----CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 307 Dl~~~~e~~~~l~~----------------------------~~~~~~----~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+....+. +.+.+ .++..+ +.+.|+.++.++++++++|.+.+.
T Consensus 173 D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 173 DLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 99765332 12111 122222 346788889999999998877653
No 265
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.28 E-value=6.4e-11 Score=113.86 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=80.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccC---------CCCce-eecceEEecCCCCCCccccCCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~---------~~~tT-~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~ 246 (384)
.+|+++|.+|+|||||+|+|.+....... +..|+ +......+...+ ...++.||||||+.+...
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g------~~~~l~iiDTpGfgd~~~ 78 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG------VKLKLTVIDTPGFGDNIN 78 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC------EEEEEEEEecCCcccccc
Confidence 57999999999999999999987643321 22222 233333333221 112699999999865422
Q ss_pred cccc-------hhHHHHH------------Hc--ccCCeEEEEeeCCCCCC-HhHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 016700 247 LGKG-------LGRNFLR------------HL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN 304 (384)
Q Consensus 247 ~~~g-------l~~~fl~------------~i--~~ad~il~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~~p~ivV~N 304 (384)
.... +...|.. .+ .++|+++|++|.+.... ..++. +.+.+.. ..|+++|+|
T Consensus 79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~------~v~vi~Vin 151 (276)
T cd01850 79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK------RVNIIPVIA 151 (276)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc------cCCEEEEEE
Confidence 1110 1111111 11 15789999999875322 23333 3334432 489999999
Q ss_pred CCCCCChHH---HHHHHHHHHHhcCCc
Q 016700 305 KIDLPEARD---RLQSLTEEILKIGCD 328 (384)
Q Consensus 305 K~Dl~~~~e---~~~~l~~~~~~~~~~ 328 (384)
|+|+....+ ..+.+.+.+...++.
T Consensus 152 K~D~l~~~e~~~~k~~i~~~l~~~~i~ 178 (276)
T cd01850 152 KADTLTPEELKEFKQRIMEDIEEHNIK 178 (276)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCc
Confidence 999976433 233444555555544
No 266
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.5e-11 Score=120.56 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=108.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
+=|.++|.---||||||..|-+.+......-+.|.+.--..+..+.. -...++|+||||+. .|...-.
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHe-------AFt~mRa 73 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHE-------AFTAMRA 73 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHH-------HHHHHHh
Confidence 45899999999999999999988776666667776554444443310 01379999999983 2333223
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC----------
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---------- 326 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~---------- 326 (384)
+-..-||++++|||+.+.-..+..+.+. .++. .+.|++|++||+|.++.. ......++++.+
T Consensus 74 RGa~vtDIaILVVa~dDGv~pQTiEAI~-hak~-----a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 74 RGASVTDIAILVVAADDGVMPQTIEAIN-HAKA-----AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred cCCccccEEEEEEEccCCcchhHHHHHH-HHHH-----CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhcCCce
Confidence 3346689999999999977777666553 4444 479999999999998542 233333443333
Q ss_pred -CcccccccccCHHHHHHHHHhcc
Q 016700 327 -CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 327 -~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+.+.||.++.|+.+++..+.-..
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHH
Confidence 34789999999999998876544
No 267
>PTZ00099 rab6; Provisional
Probab=99.27 E-value=2e-11 Score=109.60 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=82.0
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.+.||||||+.. +...+..+++.||++|+|+|++++.+++....|+.++..... ...|+++|+||+||...
T Consensus 30 ~l~iwDt~G~e~-------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~~ 100 (176)
T PTZ00099 30 RLQLWDTAGQER-------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGDL 100 (176)
T ss_pred EEEEEECCChHH-------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence 789999999844 233345668899999999999998888888888887765432 35889999999999642
Q ss_pred HH-HHHHHHHHHHhc--CCcccccccccCHHHHHHHHHhccCc
Q 016700 312 RD-RLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 312 ~e-~~~~l~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.. ..++........ .+.++|++++.+++++|++|+..+.+
T Consensus 101 ~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 101 RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 11 111222223333 35689999999999999999988754
No 268
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-11 Score=106.04 Aligned_cols=119 Identities=25% Similarity=0.345 Sum_probs=90.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+.-.+++++|.-|||||||++.|-..+... ...|++|....+.+... +++.+|..|+.. -.+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~m--------~ftt~DLGGH~q-------Arr 79 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGGM--------TFTTFDLGGHLQ-------ARR 79 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecCc--------eEEEEccccHHH-------HHH
Confidence 455789999999999999999998765433 23377777766665543 799999999953 466
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.|..++..||.++|+||+.+.+.+.+.+.-++.+.. ...+...|+++..||+|.+.+
T Consensus 80 ~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~-~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 80 VWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLS-DESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHh-HHHHhcCcceeecccccCCCc
Confidence 788899999999999999987766554433333322 223567999999999999865
No 269
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.25 E-value=1.2e-11 Score=111.81 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=112.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCC-CCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~-~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.|++|||...+|||+||..++.... ...|..|-.+-....+..+ +. ...+.+|||+|+.+... ++.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~f-p~~yvPTVFdnys~~v~V~dg~------~v~L~LwDTAGqedYDr----lRp-- 71 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAF-PEEYVPTVFDNYSANVTVDDGK------PVELGLWDTAGQEDYDR----LRP-- 71 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcC-cccccCeEEccceEEEEecCCC------EEEEeeeecCCCccccc----ccc--
Confidence 5899999999999999998886521 1333333223333333332 21 12689999999987632 221
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----------------HHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSL 318 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e----------------~~~~l 318 (384)
+ .+..+|++|+++++.++.+++.. ..|..|+..|.+ +.|+|+|++|.||..... ....+
T Consensus 72 l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 72 L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 1 45789999999999999888875 678899999885 799999999999985322 22333
Q ss_pred HHHHHhcCCcccccccccCHHHHHHHHHhccCc
Q 016700 319 TEEILKIGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 319 ~~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.+++....+.++++.+..++++.|+........
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 344444557799999999999999988776644
No 270
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.24 E-value=1e-11 Score=116.12 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=68.6
Q ss_pred ceEEEeCCCCccccccccc---hhHHHHHHcccCCeEEEEeeCCCCCCHhHH--HHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 232 EATLADLPGLIEGAHLGKG---LGRNFLRHLRRTRLLVHVIDAAAENPVNDY--RTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~g---l~~~fl~~i~~ad~il~VvD~s~~~~~~~~--~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
+.+|+||||+|+-..+... +-..+ ... .--+++||+|.........+ ..++..-..|. .+.|+|+|+||+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~l-ass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETL-ASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhH-hhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 4899999999985433211 22222 211 13578999997653322222 22322222333 468999999999
Q ss_pred CCCChHH------HHHHHH-----------------------HHHHhcCCcccccccccCHHHHHHHHHhccCcc
Q 016700 307 DLPEARD------RLQSLT-----------------------EEILKIGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 307 Dl~~~~e------~~~~l~-----------------------~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
|+.+..- ..+.++ +++..+....+|+.++.|.+++|..+.+.+.+-
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9976421 111111 222333445678899999999999887766543
No 271
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.24 E-value=1.3e-10 Score=115.31 Aligned_cols=163 Identities=21% Similarity=0.207 Sum_probs=100.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC----CCC-----------c-cCCCC---ceeecce---EEecCCCCCCccccCCceE
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEAT 234 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~----~~~-----------i-a~~~~---tT~~p~~---g~v~~~~~~~~~~~~~~i~ 234 (384)
..|+++|+.|+|||||+|+|.+. +.. + ++.++ ||.+|.. ..+..... .....++.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~---~~~~~~Vr 94 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ---EGTKFKVR 94 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc---CCCcccEE
Confidence 45999999999999999999987 433 3 66778 7888876 44433221 01224799
Q ss_pred EEeCCCCccccccccchhHH----------------------HHHHcc-cCCeEEEEe-eCCC-----CCCHhHHHHHHH
Q 016700 235 LADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKE 285 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~----------------------fl~~i~-~ad~il~Vv-D~s~-----~~~~~~~~~l~~ 285 (384)
++||+|+......+.--... ..+-+. .+++.|+|. |.+= .+..+.-..+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998643322111111 445566 899999999 7751 223334456777
Q ss_pred HHHhcCCCCCCCCEEEEEeCCCCC-Ch-HHHHHHHHHHHHhcCCc--cccc--ccccCHHHHHHHHHhccC
Q 016700 286 ELRMYNPDYLERPFIVVLNKIDLP-EA-RDRLQSLTEEILKIGCD--KVTS--ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 286 eL~~~~~~l~~~p~ivV~NK~Dl~-~~-~e~~~~l~~~~~~~~~~--~~sa--~t~~gv~e~l~~l~~~~~ 350 (384)
+|+. .++|+++|+||+|-. .. .+..+++. ..++.. .+++ -+...+...++.+..+..
T Consensus 175 eLk~-----~~kPfiivlN~~dp~~~et~~l~~~l~---eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 175 ELKE-----LNKPFIILLNSTHPYHPETEALRQELE---EKYDVPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred HHHh-----cCCCEEEEEECcCCCCchhHHHHHHHH---HHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 8876 469999999999943 22 22222332 223332 2222 245566666666665554
No 272
>PRK13351 elongation factor G; Reviewed
Probab=99.24 E-value=7.3e-11 Score=127.04 Aligned_cols=128 Identities=24% Similarity=0.258 Sum_probs=84.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc---c---------C------CCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i---a---------~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
..+.+|+|+|..++|||||+++|....-.+ . + ....|+......+... ...+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~l 77 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--------NHRINL 77 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--------CEEEEE
Confidence 346789999999999999999998532111 0 0 0122333323333322 237999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HH
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RD 313 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e 313 (384)
|||||+.+ +...+...++.+|++++|+|+++....+....| ..+.. .+.|+++|+||+|+... .+
T Consensus 78 iDtPG~~d-------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-----~~~p~iiviNK~D~~~~~~~~ 144 (687)
T PRK13351 78 IDTPGHID-------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-----YGIPRLIFINKMDRVGADLFK 144 (687)
T ss_pred EECCCcHH-------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-----cCCCEEEEEECCCCCCCCHHH
Confidence 99999964 344566778899999999999987665554333 44443 35899999999999864 23
Q ss_pred HHHHHHHHH
Q 016700 314 RLQSLTEEI 322 (384)
Q Consensus 314 ~~~~l~~~~ 322 (384)
.++++.+.+
T Consensus 145 ~~~~i~~~l 153 (687)
T PRK13351 145 VLEDIEERF 153 (687)
T ss_pred HHHHHHHHH
Confidence 444444443
No 273
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=5.8e-11 Score=118.25 Aligned_cols=164 Identities=25% Similarity=0.285 Sum_probs=118.3
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCC---------------CccCCCCceeecceEEecCCCCCCccccCCceEEE
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---------------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 236 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~---------------~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~ 236 (384)
.++.+..+.+|-.-.-|||||..+|....- .+....+.|+..+.-.+.+... +...| .+.++
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-~g~~Y--~lnlI 81 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-DGETY--VLNLI 81 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-CCCEE--EEEEc
Confidence 356677899999999999999999975421 2334456777666666655321 11122 68999
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 316 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~ 316 (384)
||||+.+. .....+.+..|...|+|||++..-..+.+...+-.++ .+..+|-|+||+||+.++ .+
T Consensus 82 DTPGHVDF-------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle------~~LeIiPViNKIDLP~Ad--pe 146 (603)
T COG0481 82 DTPGHVDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPAAD--PE 146 (603)
T ss_pred CCCCccce-------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH------cCcEEEEeeecccCCCCC--HH
Confidence 99999774 3445677888999999999998877777777766665 357789999999998653 22
Q ss_pred HHHHHHHh-cC-----CcccccccccCHHHHHHHHHhccCccc
Q 016700 317 SLTEEILK-IG-----CDKVTSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 317 ~l~~~~~~-~~-----~~~~sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
...++++. +| ...+|++++.|++++++.+..++....
T Consensus 147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 33333332 23 347899999999999999999887644
No 274
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.7e-11 Score=108.05 Aligned_cols=117 Identities=28% Similarity=0.361 Sum_probs=84.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
..|.|+|+.++|||+|+-.|+..... -.+|++.|+.+++.+... ...++|.||+. .+...++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~gs~--------~~~LVD~PGH~-------rlR~kl~ 100 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRLGSE--------NVTLVDLPGHS-------RLRRKLL 100 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc---CeeeeeccceeeEeecCc--------ceEEEeCCCcH-------HHHHHHH
Confidence 47999999999999999999866321 235678999998876542 57999999994 4677777
Q ss_pred HHcc---cCCeEEEEeeCCC--CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 257 RHLR---RTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 257 ~~i~---~ad~il~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++. ++.+++||||+.. ++..+.-+.++..|..-.......|+++++||.|+..+
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 7665 8999999999865 23333334455544433212235789999999998653
No 275
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.22 E-value=2.2e-10 Score=117.23 Aligned_cols=163 Identities=14% Similarity=0.141 Sum_probs=98.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEe---------------cCCCCC----------Cccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTL----------GAEK 228 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v---------------~~~~~~----------~~~~ 228 (384)
..|+++|.-..|||||+.+|++..... .-..+.|++.-.... .+.... ....
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 579999999999999999999754311 111122222111100 000000 0001
Q ss_pred cCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 229 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 229 ~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
+...+.|+||||+. .+....+.-+..+|++++|||+.... ..+..+.+ ..+... .-+|+|+|+||+|
T Consensus 115 ~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l----gi~~iIVvlNKiD 182 (460)
T PTZ00327 115 LKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM----KLKHIIILQNKID 182 (460)
T ss_pred ccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc----CCCcEEEEEeccc
Confidence 12368999999983 35555666778899999999998642 22222222 223322 1257899999999
Q ss_pred CCChHH---HHHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccCc
Q 016700 308 LPEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 308 l~~~~e---~~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+.+..+ ..+++.+.+.. ..+.++|+.++.+++.+++.|.+.+..
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 975332 23344443332 245578999999999999999875543
No 276
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.21 E-value=1.4e-10 Score=118.59 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=90.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTL 224 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~~~ 224 (384)
-..|+++|..++|||||+.+|+...-.+ ....+.|++.....+...
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~--- 83 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC---
Confidence 3579999999999999999987521110 012234444444333332
Q ss_pred CccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCC------HhHHHHHHHHHHhcCCCCCCCC
Q 016700 225 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLERP 298 (384)
Q Consensus 225 ~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~~p 298 (384)
...+.|+||||+.+ +.......+..+|++++|||++.... ..+.+..+..+.. .+.|
T Consensus 84 -----~~~i~lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-----~gi~ 146 (446)
T PTZ00141 84 -----KYYFTIIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-----LGVK 146 (446)
T ss_pred -----CeEEEEEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-----cCCC
Confidence 23789999999843 45566677889999999999987531 1122223333433 3455
Q ss_pred -EEEEEeCCCCCC---hHH----HHHHHHHHHHhcCC-------cccccccccCHHH
Q 016700 299 -FIVVLNKIDLPE---ARD----RLQSLTEEILKIGC-------DKVTSETELSSED 340 (384)
Q Consensus 299 -~ivV~NK~Dl~~---~~e----~~~~l~~~~~~~~~-------~~~sa~t~~gv~e 340 (384)
+|+++||+|... .++ ..+++.+.+...++ .++|+.++.++.+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 679999999532 222 34445555555554 3667778888753
No 277
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.21 E-value=2.1e-10 Score=107.84 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=50.8
Q ss_pred CceEEEeCCCCcccccc------ccchhHHHHHHcc-cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEE
Q 016700 231 SEATLADLPGLIEGAHL------GKGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 303 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~------~~gl~~~fl~~i~-~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~ 303 (384)
..++|+||||+...+.. ...+......|++ ..+++|+|+|+...-..++...+.+++.. ..+|+++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-----~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-----QGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-----cCCcEEEEE
Confidence 46999999999754211 1234455677787 45699999998754333333334444443 468999999
Q ss_pred eCCCCCCh
Q 016700 304 NKIDLPEA 311 (384)
Q Consensus 304 NK~Dl~~~ 311 (384)
||+|....
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998754
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.19 E-value=1.2e-10 Score=107.66 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=74.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccC--CCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~--~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
+|+|+|.+|+||||++|.|++.+..... ....|........... +..+.|+||||+.+.....+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~--------g~~v~VIDTPGl~d~~~~~~~~~~~i 73 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD--------GRQVTVIDTPGLFDSDGSDEEIIREI 73 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET--------TEEEEEEE--SSEETTEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec--------ceEEEEEeCCCCCCCcccHHHHHHHH
Confidence 6899999999999999999998754322 2223433333333222 23799999999977544333333333
Q ss_pred HH----HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 256 LR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 256 l~----~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.+ .....|++|||++.. .-+.++...+......+.+.. .+.++||++..|....
T Consensus 74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELED 131 (212)
T ss_dssp HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTT
T ss_pred HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhcccccc
Confidence 33 234579999999998 445555555544444555433 3678999999987654
No 279
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=3e-11 Score=106.24 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=109.7
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
.+....+++++|.-++||||+|++.+..-.. .+|- .|+ +.....+.... -...+.+|||+|+.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifT-kdyk-ktIgvdflerqi~v~~------Edvr~mlWdtagqeE------ 81 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFT-KDYK-KTIGVDFLERQIKVLI------EDVRSMLWDTAGQEE------ 81 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccc-cccc-cccchhhhhHHHHhhH------HHHHHHHHHhccchh------
Confidence 3456789999999999999999999854211 1111 011 00000111100 012578999999955
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhc
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKI 325 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~ 325 (384)
+......|++.|.+.++|+..++..+++....|++++..- ..+.|.++|-||+|+.+.. +..+.+.+.+. .
T Consensus 82 -fDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e---~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~ 156 (246)
T KOG4252|consen 82 -FDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE---TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-K 156 (246)
T ss_pred -HHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH---hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-h
Confidence 4445567789999999999999999999999999988763 3479999999999998642 22333333322 3
Q ss_pred CCcccccccccCHHHHHHHHHhccC
Q 016700 326 GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 326 ~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.+..++++..-++...|..|+++..
T Consensus 157 RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 157 RLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 4667788888899999998888653
No 280
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=9.5e-10 Score=111.29 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=107.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+.-+-|-|+|.-.-||||||.+|-+...+-...-+.|...--..+.... +.+++|.||||+-- |..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaA-------F~a 216 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAA-------FSA 216 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHH-------HHH
Confidence 4567799999999999999999998876666666667654444444332 34899999999832 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hc-
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KI- 325 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~- 325 (384)
+-.+-..-+|++++||-+.+....+..+.+... +. .+.|+|+++||||.+.+. .+...+++. .+
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhA-k~-----A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~G 288 (683)
T KOG1145|consen 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHA-KS-----ANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLG 288 (683)
T ss_pred HHhccCccccEEEEEEEccCCccHhHHHHHHHH-Hh-----cCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcC
Confidence 333445568999999999987777766655432 22 579999999999988642 233333333 23
Q ss_pred ---CCcccccccccCHHHHHHHHHh
Q 016700 326 ---GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 326 ---~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
.+.++|+.++.+++.+-+.+.-
T Consensus 289 GdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 289 GDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CceeEEEeecccCCChHHHHHHHHH
Confidence 2347899999999988877654
No 281
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.14 E-value=4.6e-10 Score=114.86 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=89.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPT 223 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~~ 223 (384)
.-..|+++|..++|||||+.+|+...-.+ ....+.|++.....+...
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-- 83 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-- 83 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC--
Confidence 34569999999999999999986321100 001123444333333222
Q ss_pred CCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCH------hHHHHHHHHHHhcCCCCCCC
Q 016700 224 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLER 297 (384)
Q Consensus 224 ~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~~ 297 (384)
...++|+||||+.+ +.......+..+|++|+|+|++..... .+.+..+..+.. .+.
T Consensus 84 ------~~~i~liDtPGh~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi 145 (447)
T PLN00043 84 ------KYYCTVIDAPGHRD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGV 145 (447)
T ss_pred ------CEEEEEEECCCHHH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCC
Confidence 23789999999854 455566778899999999999863211 122222222322 245
Q ss_pred -CEEEEEeCCCCCCh---H----HHHHHHHHHHHhcCC-------cccccccccCHHH
Q 016700 298 -PFIVVLNKIDLPEA---R----DRLQSLTEEILKIGC-------DKVTSETELSSED 340 (384)
Q Consensus 298 -p~ivV~NK~Dl~~~---~----e~~~~l~~~~~~~~~-------~~~sa~t~~gv~e 340 (384)
++|+++||+|+... + +..+++.+.+...++ .++|+.+++++.+
T Consensus 146 ~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 146 KQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 57889999998621 1 234555556665553 4668888887643
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.14 E-value=7e-10 Score=103.50 Aligned_cols=107 Identities=22% Similarity=0.333 Sum_probs=69.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC--CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~--~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.-|+++|.+|+|||||+++|.+... .+....++ . -.+... ..++.++||||.. ..
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i----~i~~~~--------~~~i~~vDtPg~~----------~~ 96 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I----TVVTGK--------KRRLTFIECPNDI----------NA 96 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E----EEEecC--------CceEEEEeCCchH----------HH
Confidence 4599999999999999999986521 11211221 0 011111 2378999999863 23
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCChH
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEAR 312 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~-ivV~NK~Dl~~~~ 312 (384)
.+..++.+|++++|+|++......+. .++..+.. .+.|. ++|+||+|+....
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~-----~g~p~vi~VvnK~D~~~~~ 149 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMETF-EFLNILQV-----HGFPRVMGVLTHLDLFKKN 149 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH-----cCCCeEEEEEeccccCCcH
Confidence 45667889999999999875554443 34444543 24674 5599999997443
No 283
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.1e-10 Score=99.23 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=102.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|.++|.-|+||+|++-++.--+.- ...| |...+...+.+... ++.+||..|. -.+..-|.
T Consensus 19 ~rililgldGaGkttIlyrlqvgevv-ttkP--tigfnve~v~yKNL--------k~~vwdLggq-------tSirPyWR 80 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVV-TTKP--TIGFNVETVPYKNL--------KFQVWDLGGQ-------TSIRPYWR 80 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCccc-ccCC--CCCcCccccccccc--------cceeeEccCc-------ccccHHHH
Confidence 36889999999999999888643311 1111 22333444444322 7899999998 34677888
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHH----HHHHh--cCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT----EEILK--IGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~----~~~~~--~~~~~ 329 (384)
.|++..|.+|||||.++.+....... +...|. .+++....+++++||.|........+.+. ..+++ +.+..
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~--E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~ 158 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQ--EEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVK 158 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhc--cHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEe
Confidence 99999999999999998766543322 222222 23445677899999999876533222221 12222 35668
Q ss_pred cccccccCHHHHHHHHHhcc
Q 016700 330 VTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~ 349 (384)
.||.++.|+++.++||..-+
T Consensus 159 tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred eccccccCCcHHHHHHHHHH
Confidence 89999999999999998655
No 284
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.2e-10 Score=107.50 Aligned_cols=144 Identities=21% Similarity=0.308 Sum_probs=96.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC---CccCCCCcee------ecceEEecCCCCCCc--c------------------
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGDPTLGA--E------------------ 227 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~---~ia~~~~tT~------~p~~g~v~~~~~~~~--~------------------ 227 (384)
+-|.++|....||||+|+.|+..+. .|++.|.|.. .+..+++.+.....+ .
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 4599999999999999999998763 3455553321 111222211100000 0
Q ss_pred -----ccCCceEEEeCCCCccccccccchhHHHHH----HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC
Q 016700 228 -----KYSSEATLADLPGLIEGAHLGKGLGRNFLR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 298 (384)
Q Consensus 228 -----~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~----~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p 298 (384)
+.-.+++|+||||+.++..+....+..|-. .+++||.|++++|+..-+...+++.++..|+. .+-.
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~Edk 213 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----HEDK 213 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----Ccce
Confidence 012359999999999887664443333322 35899999999999988777888888887774 2456
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHHHhc
Q 016700 299 FIVVLNKIDLPEARDRLQSLTEEILKI 325 (384)
Q Consensus 299 ~ivV~NK~Dl~~~~e~~~~l~~~~~~~ 325 (384)
+-||+||+|..+.++.+...-..++.+
T Consensus 214 iRVVLNKADqVdtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQLMRVYGALMWSL 240 (532)
T ss_pred eEEEeccccccCHHHHHHHHHHHHHhh
Confidence 889999999998877665555555554
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.10 E-value=8.2e-11 Score=110.69 Aligned_cols=75 Identities=29% Similarity=0.429 Sum_probs=40.2
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHccc--CCeEEEEeeCCCCCCHhHH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~--ad~il~VvD~s~~~~~~~~-~~l~~eL~-~~~~~l~~~p~ivV~NK~D 307 (384)
.+.|+||||++|-... ......+.+++.+ .-+++|++|+........+ ..++-.+. .+. .+.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence 5899999999985332 1233445556653 3478999998764433322 32222222 111 3699999999999
Q ss_pred CCC
Q 016700 308 LPE 310 (384)
Q Consensus 308 l~~ 310 (384)
+..
T Consensus 168 l~~ 170 (238)
T PF03029_consen 168 LLS 170 (238)
T ss_dssp GS-
T ss_pred ccc
Confidence 987
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.08 E-value=5.9e-10 Score=120.46 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc----------cCC------CCceeecceEEe--cCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRL--DGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i----------a~~------~~tT~~p~~g~v--~~~~~~~~~~~~~~i~i 235 (384)
+.+.+|+++|..++|||||+++|+...-.+ .++ ...|+....... .... . ...+.+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~----~--~~~i~l 90 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG----N--EYLINL 90 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC----C--ceEEEE
Confidence 346789999999999999999997431111 011 122332222111 1111 1 237999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
+||||+.+ +.......+..+|++|+|+|+......++...+ ..+.. .+.|.++|+||+|...
T Consensus 91 iDTPG~~~-------f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 91 IDTPGHVD-------FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred EeCCCccc-------cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH-----cCCCEEEEEEChhccc
Confidence 99999965 344566788999999999999875444433333 33322 2578899999999864
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.07 E-value=1e-09 Score=120.31 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=77.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCc---------------eeecceEEecCCCCC--CccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFT---------------TLMPNLGRLDGDPTL--GAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~t---------------T~~p~~g~v~~~~~~--~~~~~~~~i~i 235 (384)
..+..|+|+|..++|||||+++|+...-.+ ....++ |+......+.+.... ........+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345689999999999999999998643222 111111 222111111111000 00000125899
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
+||||+.+ +.......+..+|++|+|+|+......++.. ++..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~-------f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVD-------FSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH-----cCCCEEEEEEChhhh
Confidence 99999965 4445567788999999999998865544433 4444443 358999999999987
No 288
>PRK12740 elongation factor G; Reviewed
Probab=99.04 E-value=1.5e-09 Score=116.58 Aligned_cols=109 Identities=25% Similarity=0.232 Sum_probs=72.4
Q ss_pred EecCCCcHHHHHHHHHcCCCCc---cC---------------CCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 182 VGLPNAGKSTLLAAITHAKPDI---AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 182 vG~pnaGKSSLln~L~~~~~~i---a~---------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
+|.+|+|||||+++|....-.+ .+ ..+.|+......+.+.. ..+++|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--------~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--------HKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--------EEEEEEECCCcHH
Confidence 5899999999999996432211 11 12223333333333222 3799999999954
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
+...+.+.+..+|++++|+|++......... ++..+.. .+.|+++|+||+|+...
T Consensus 73 -------~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 -------FTGEVERALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK-----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred -------HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 3445667788999999999998866555443 3334443 35899999999998753
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.04 E-value=2e-09 Score=118.11 Aligned_cols=123 Identities=20% Similarity=0.142 Sum_probs=78.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCcc-CCC---------------CceeecceEEecCCCCC--------Ccccc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-DYP---------------FTTLMPNLGRLDGDPTL--------GAEKY 229 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia-~~~---------------~tT~~p~~g~v~~~~~~--------~~~~~ 229 (384)
..+..|+|+|..++|||||+.+|+...-.+. ... +.|+......+.+.... .....
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3466899999999999999999985442221 111 11222222222221000 00001
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
...+.|+||||+.+ +.......+..||++|+|||+......++...|. .+.. .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~d-------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH-----CCCCEEEEEECCccc
Confidence 23679999999965 4445567788899999999999865555544444 3333 368999999999987
No 290
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.03 E-value=1.4e-09 Score=113.40 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=79.1
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCC-CCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc---
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--- 247 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~-~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--- 247 (384)
|..-.+|+|+|.+|+|||||+|+|++.+.. +..+ +.||. ......... +..+.|+||||+.+....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~id--------G~~L~VIDTPGL~dt~~dq~~ 185 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQ--------GVKIRVIDTPGLKSSASDQSK 185 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEEC--------CceEEEEECCCCCccccchHH
Confidence 445567999999999999999999998643 3443 45554 222111111 237999999999875322
Q ss_pred ccchhHHHHHHcc--cCCeEEEEeeCCCCCC-HhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 248 GKGLGRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 248 ~~gl~~~fl~~i~--~ad~il~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
++.+.....+.+. .+|++|||+.++.... .++...+...-..+.+. .-..+|||++..|..+
T Consensus 186 neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 186 NEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-hHcCEEEEEeCCccCC
Confidence 1223333333444 4799999987764322 23433333333334433 2477999999999864
No 291
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.03 E-value=1.5e-09 Score=110.62 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=108.4
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC--Cc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~--~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
.-.+|+|+|..|+||||||.+|...+. .| ...|-.|+-+. +..+ ....+|+||+--.+ -
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad---vtPe--------~vpt~ivD~ss~~~-------~ 69 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD---VTPE--------NVPTSIVDTSSDSD-------D 69 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc---cCcC--------cCceEEEecccccc-------h
Confidence 345899999999999999999998752 23 11222333211 1111 12478999974322 1
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----H-HHHHHHHHHHhc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----D-RLQSLTEEILKI 325 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e-~~~~l~~~~~~~ 325 (384)
.....+.+++||++++|++.+++.+.+.+ ..|+.+++..-....+.|+|+|.||+|+.... | ....+...+.++
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei 149 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI 149 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH
Confidence 23345678999999999999988777766 44667777554445689999999999987532 1 255556666655
Q ss_pred C-CcccccccccCHHHHHHHHHhccC
Q 016700 326 G-CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 326 ~-~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
. +.++++.+...+.++|....+.+.
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhheee
Confidence 3 668999999999999987666553
No 292
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.02 E-value=2.1e-09 Score=89.62 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=95.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.++++||..++|||||.++|-+... +....-.+++. +=-.+||||..- +++.+-+..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~----------d~~~IDTPGEy~---~~~~~Y~aL~ 59 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFN----------DKGDIDTPGEYF---EHPRWYHALI 59 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh---------hhcccceeecc----------CccccCCchhhh---hhhHHHHHHH
Confidence 4799999999999999999998752 21111123321 113589999632 1233334445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Ccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~---~~~~sa~ 333 (384)
.....+|++++|..+.++.+.-.-. +. ....+|+|-|++|+||.+ ++.++..++++...| +...++.
T Consensus 60 tt~~dadvi~~v~~and~~s~f~p~-----f~----~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRFPPG-----FL----DIGVKKVIGVVTKADLAE-DADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred HHhhccceeeeeecccCccccCCcc-----cc----cccccceEEEEecccccc-hHhHHHHHHHHHHcCCcceEEEecc
Confidence 5568899999999988754321100 00 123578999999999996 445666777777665 4567888
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
...|++++++.|.+..
T Consensus 130 d~~gv~~l~~~L~~~e 145 (148)
T COG4917 130 DNQGVEELVDYLASLE 145 (148)
T ss_pred CcccHHHHHHHHHhhc
Confidence 9999999999987643
No 293
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.5e-09 Score=105.64 Aligned_cols=146 Identities=20% Similarity=0.218 Sum_probs=88.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-------------------------------CccCCCCceeecceEEecCCCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-------------------------------DIADYPFTTLMPNLGRLDGDPTL 224 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-------------------------------~ia~~~~tT~~p~~g~v~~~~~~ 224 (384)
-..++++|...+|||||+-+|+-.-- +...+-+.|++.....+..+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k-- 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK-- 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC--
Confidence 35789999999999999999863210 011223444444444443332
Q ss_pred CccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC------CHhHHHHHHHHHHhcCCCCCCCC
Q 016700 225 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERP 298 (384)
Q Consensus 225 ~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~~p 298 (384)
..++|+|+||+.+ +......-+..||+.|+|||++..+ ...+.+... .|..+. .-..
T Consensus 85 ------~~~tIiDaPGHrd-------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tl---Gi~~ 147 (428)
T COG5256 85 ------YNFTIIDAPGHRD-------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTL---GIKQ 147 (428)
T ss_pred ------ceEEEeeCCchHH-------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhc---CCce
Confidence 2699999999844 4444555567899999999998753 111111111 122221 2356
Q ss_pred EEEEEeCCCCCC-hHHHHHHHHHHHH----hcCC-------cccccccccCHHH
Q 016700 299 FIVVLNKIDLPE-ARDRLQSLTEEIL----KIGC-------DKVTSETELSSED 340 (384)
Q Consensus 299 ~ivV~NK~Dl~~-~~e~~~~l~~~~~----~~~~-------~~~sa~t~~gv~e 340 (384)
+||++||||+.+ .+++++++...+. .+++ .++|+-.++++.+
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 899999999974 4555666555443 3333 3556666666554
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.94 E-value=5.7e-09 Score=113.11 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=75.3
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccC-CC---------------CceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YP---------------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~-~~---------------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
..+..|+++|..++|||||+.+|....-.+.. .. +.|+......+.+.. .. -...+.|+|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--~~--~~~~i~liD 93 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--EG--KEYLINLID 93 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe--cC--CcEEEEEEc
Confidence 45668999999999999999999754322210 01 122222222221100 00 023689999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
|||+.+ +.....+.+..+|++|+|+|+......++...|. .... .+.|.|+++||+|+.
T Consensus 94 tPG~~d-------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~-----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 94 TPGHVD-------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR-----ERVKPVLFINKVDRL 152 (731)
T ss_pred CCCccC-------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH-----cCCCeEEEEECchhh
Confidence 999965 3455667788899999999998764444434333 3332 246789999999976
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.93 E-value=9.1e-09 Score=101.11 Aligned_cols=100 Identities=9% Similarity=0.083 Sum_probs=63.7
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
..++|+||+|...... .....||++++|++....+ ++..+...+. ...-++|+||+|+..
T Consensus 149 ~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd---~iq~~k~gi~-------E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 149 YDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGD---ELQGIKKGIM-------ELADLIVINKADGDN 208 (332)
T ss_pred CCEEEEECCCCccchh----------HHHHhCCEEEEEecCCchH---HHHHHHhhhh-------hhhheEEeehhcccc
Confidence 3799999999974321 1245699999998744333 3333322121 233489999999875
Q ss_pred hH---HHHHHHHHHHHh---------cCCcccccccccCHHHHHHHHHhccC
Q 016700 311 AR---DRLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 311 ~~---e~~~~l~~~~~~---------~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.. ....++.+.+.. ..+..+|+.++.|++++++.+.....
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 32 233344444432 12346899999999999999988653
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.91 E-value=8.3e-09 Score=100.38 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=62.7
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
..++|+||||.... ....++.+|.++++.+... .+++..+...+ .++|.++|+||+|+..
T Consensus 127 ~D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-------~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 127 YDVIIVETVGVGQS----------EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-------MEIADIYVVNKADGEG 186 (300)
T ss_pred CCEEEEeCCCCchh----------hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-------hhhccEEEEEcccccc
Confidence 47999999997431 1234566888888865432 23333333322 3588899999999986
Q ss_pred hHHHH---HHH----HHHHHh---c--CCcccccccccCHHHHHHHHHhccC
Q 016700 311 ARDRL---QSL----TEEILK---I--GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 311 ~~e~~---~~l----~~~~~~---~--~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+.. ..+ ...... + .+..+|+.++.|++++++++.....
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 54211 111 111111 1 2457899999999999999987643
No 297
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.90 E-value=1.7e-08 Score=111.66 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=88.8
Q ss_pred cHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC----------ccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 188 GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 188 GKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~----------~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|||||.+|.+.+..-...-+.|.+.-...+..+.... ...-...++||||||+.. +.....+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-------F~~lr~~ 545 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-------FTSLRKR 545 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-------HHHHHHh
Confidence 49999999998876555555666544333333221000 000012589999999743 2222334
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-----------------HHHHHHHH-
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-----------------RDRLQSLT- 319 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-----------------~e~~~~l~- 319 (384)
.+..||++++|+|+++....++...+ ..+.. .+.|+++|+||+|+... ++...++.
T Consensus 546 g~~~aDivlLVVDa~~Gi~~qT~e~I-~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 546 GGSLADLAVLVVDINEGFKPQTIEAI-NILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred hcccCCEEEEEEECcccCCHhHHHHH-HHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 46779999999999875444444433 33443 25899999999998531 11122221
Q ss_pred ------HHHHhc-----------------CCcccccccccCHHHHHHHHHh
Q 016700 320 ------EEILKI-----------------GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 320 ------~~~~~~-----------------~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
..+... .+.++|+.++.|+++++..|..
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 112222 2346899999999999987753
No 298
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=3e-09 Score=95.27 Aligned_cols=55 Identities=33% Similarity=0.562 Sum_probs=45.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
..+|+++|.||+|||||+|+|++.+. .++++|++|...+...+. ..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-----------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-----------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-----------CCEEEEECcCC
Confidence 36899999999999999999999876 569999999876654432 26899999996
No 299
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.86 E-value=4.9e-08 Score=97.45 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=100.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC------c----------cCCCCceeecceEEecCCCCCCccccCCceEEEeC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD------I----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~------i----------a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~Dt 238 (384)
.+..|+||-.-.-|||||+..|..+.-. + ...-+.|+-..--.+.+.. .++.|+||
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--------~~INIvDT 75 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--------TRINIVDT 75 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--------eEEEEecC
Confidence 3557999999999999999999865311 1 1122334322222333332 37999999
Q ss_pred CCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHH
Q 016700 239 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQ 316 (384)
Q Consensus 239 PG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~~ 316 (384)
||+-+ |+-...+-+.-.|.+|+|||+.+....+.--.+.+.|.. +.+-|||+||+|.+.+ .+..+
T Consensus 76 PGHAD-------FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd 142 (603)
T COG1217 76 PGHAD-------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVD 142 (603)
T ss_pred CCcCC-------ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHH
Confidence 99944 555666667778999999999986655555555566653 4555889999999865 45555
Q ss_pred HHHHHHHhc-------CCccc------------ccccccCHHHHHHHHHhccCcc
Q 016700 317 SLTEEILKI-------GCDKV------------TSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 317 ~l~~~~~~~-------~~~~~------------sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
+..+.+-++ .|+.+ .......+..+|+.|.++....
T Consensus 143 ~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 143 EVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred HHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 555555433 22211 1123445777888888777543
No 300
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.83 E-value=6.5e-09 Score=91.22 Aligned_cols=54 Identities=31% Similarity=0.485 Sum_probs=43.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
..|+++|.||||||||+|+|.+.+. .++++|++|.....-.+ ...+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence 4689999999999999999998765 55889999986544222 125899999996
No 301
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.4e-08 Score=104.53 Aligned_cols=119 Identities=25% Similarity=0.246 Sum_probs=80.7
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCC---ccCCC---------------CceeecceEEecCCCCCCccccCCceE
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPD---IADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEAT 234 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~---ia~~~---------------~tT~~p~~g~v~~~~~~~~~~~~~~i~ 234 (384)
+..+..|+|+++-.+|||||..+|.-..-. +.+.. +.|+.-....+.... ...++
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-------~~~iN 79 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-------DYRIN 79 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-------ceEEE
Confidence 345678999999999999999998743221 11111 112222222222221 13799
Q ss_pred EEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 235 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
++||||+++ |.....+.++-+|.+++|+|+......+.-..| .....| +.|.++++||+|....
T Consensus 80 lIDTPGHVD-------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~~-----~vp~i~fiNKmDR~~a 143 (697)
T COG0480 80 LIDTPGHVD-------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADKY-----GVPRILFVNKMDRLGA 143 (697)
T ss_pred EeCCCCccc-------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhhc-----CCCeEEEEECcccccc
Confidence 999999977 455667788889999999999986655554444 444443 6899999999998754
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.78 E-value=3.7e-09 Score=99.27 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=64.8
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+.|-|.-. .=..-..-||.+++|+-....+..+.++.=.-|+. =++|+||+|++.+
T Consensus 123 D~IiiETVGvGQ----------sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia----------Di~vVNKaD~~gA 182 (266)
T PF03308_consen 123 DVIIIETVGVGQ----------SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA----------DIFVVNKADRPGA 182 (266)
T ss_dssp SEEEEEEESSST----------HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHHH
T ss_pred CEEEEeCCCCCc----------cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc----------cEEEEeCCChHHH
Confidence 578888877632 22333566899999998877776665544333332 2999999998776
Q ss_pred HHHHHHHHHHHHhc-----CC----cccccccccCHHHHHHHHHhcc
Q 016700 312 RDRLQSLTEEILKI-----GC----DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 312 ~e~~~~l~~~~~~~-----~~----~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+....++...+.-. .| ..+++.++.|++++++.|.++.
T Consensus 183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66666666665422 22 2567888999999999988754
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=6.4e-08 Score=100.88 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=98.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCC---------CCcccc-CCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------LGAEKY-SSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~---------~~~~~~-~~~i~i~DtPG~~~~a~ 246 (384)
+=|+|+|.-..|||-|+..|.+.++.-+.+.+.|...---.+..... ..-..+ -+.+.++||||+..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs--- 552 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES--- 552 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh---
Confidence 45899999999999999999988766566655553221111110000 000001 13589999999843
Q ss_pred cccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh---------------
Q 016700 247 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--------------- 311 (384)
Q Consensus 247 ~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--------------- 311 (384)
|...-.+-..-||++|+|+|+.+.-..+.+..+ +.|+. .+.|+||++||+|.+-.
T Consensus 553 ----FtnlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR~-----rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 553 ----FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLRM-----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred ----hhhhhhccccccceEEEEeehhccCCcchhHHH-HHHHh-----cCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 333333345679999999999885444444443 23433 46999999999997521
Q ss_pred ---------HHHHHHHHHHHHhc-----------------CCcccccccccCHHHHHHHHHh
Q 016700 312 ---------RDRLQSLTEEILKI-----------------GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 312 ---------~e~~~~l~~~~~~~-----------------~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
.+++..+...|... .+.++|+.+++|+-+++.+|..
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 11223333333322 2347899999999999977764
No 304
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=1.3e-08 Score=92.10 Aligned_cols=54 Identities=37% Similarity=0.393 Sum_probs=44.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCC---------CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~---------~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
..++|+|.||+|||||+|+|.+.. +.++..|+||.++....+. ..+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-----------NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-----------CCCEEEeCcCC
Confidence 579999999999999999999743 3557889999998776652 15799999996
No 305
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-09 Score=96.50 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=112.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.+.++.++|.-++||+|++.+.......-......-.+..+.++..++. -..++.+||+.|+. .++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~-----t~vRlqLwdIagQe-------rfg~m 91 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDK-----TIVRLQLWDIAGQE-------RFGNM 91 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChH-----HHHHHHHhcchhhh-------hhcce
Confidence 4567899999999999999987754321110000011222223322221 01267899999983 45555
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCChH--HHHHHHHHHHHhc---CC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKI---GC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~~~~~---~~ 327 (384)
..-+++.+++..+|+|++...+++....|.+++..-. +.-.-.|+++..||||..... +.-..+.+..++. ++
T Consensus 92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gw 171 (229)
T KOG4423|consen 92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGW 171 (229)
T ss_pred EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccce
Confidence 5556788999999999999999999999998887432 222347799999999986532 2223333444444 56
Q ss_pred cccccccccCHHHHHHHHHhccCcccc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~~~~ 354 (384)
.+++++...++.|+...|.++......
T Consensus 172 tets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 172 TETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred eeeccccccChhHHHHHHHHHHHhhcc
Confidence 789999999999999999988765543
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.73 E-value=3.5e-08 Score=97.99 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=81.4
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC---CCccC--CCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK---PDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~---~~ia~--~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
.-.+|+|+|.+|+|||||||+|.+-. +..++ ..-||..+....... -..+++||+||+......
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~---------~pnv~lWDlPG~gt~~f~-- 102 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK---------FPNVTLWDLPGIGTPNFP-- 102 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS----
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC---------CCCCeEEeCCCCCCCCCC--
Confidence 34689999999999999999997632 11122 224555555443321 137999999998543211
Q ss_pred chhHHHHHH--cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC--C----------hHHHH
Q 016700 250 GLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP--E----------ARDRL 315 (384)
Q Consensus 250 gl~~~fl~~--i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~--~----------~~e~~ 315 (384)
...++.. +.+.|.+|+|.+- ..+..+.. +..++.. .++|+.+|-+|+|.. . .++.+
T Consensus 103 --~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~-La~~i~~-----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L 172 (376)
T PF05049_consen 103 --PEEYLKEVKFYRYDFFIIISSE--RFTENDVQ-LAKEIQR-----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL 172 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEESS--S--HHHHH-HHHHHHH-----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHH
T ss_pred --HHHHHHHccccccCEEEEEeCC--CCchhhHH-HHHHHHH-----cCCcEEEEEecccccHhhhhccCCcccCHHHHH
Confidence 2233333 5678987776653 34444544 4456665 469999999999951 1 12233
Q ss_pred HHHHH----HHHhcCCcc-----ccccc--ccCHHHHHHHHHhccCccc
Q 016700 316 QSLTE----EILKIGCDK-----VTSET--ELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 316 ~~l~~----~~~~~~~~~-----~sa~t--~~gv~e~l~~l~~~~~~~~ 353 (384)
+++++ .+++.++.. +|... .-....+.+.|..++....
T Consensus 173 ~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 173 QEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 44333 334434332 22222 2356667777777776543
No 307
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.72 E-value=1.4e-08 Score=99.73 Aligned_cols=57 Identities=39% Similarity=0.488 Sum_probs=48.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
.+|++||.||||||||||+|.+... .++++|++|...+.-.+. ..+.++||||++-.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~ 190 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPP 190 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCC
Confidence 6799999999999999999999876 459999999877665543 36899999999764
No 308
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.72 E-value=5e-08 Score=94.52 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=79.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc---------------------------------cCCCCceeecceEEecC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---------------------------------ADYPFTTLMPNLGRLDG 220 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i---------------------------------a~~~~tT~~p~~g~v~~ 220 (384)
|...++..+|--.-||||||-+|......+ ....+.|++.....+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456678899999999999999997542211 01123344433333322
Q ss_pred CCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE
Q 016700 221 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 300 (384)
Q Consensus 221 ~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i 300 (384)
. ..+|+|+||||+.+ +.+.+..-..-||+.|++||+...-..+..+.- ..... +.-+.++
T Consensus 84 ~--------KRkFIiADTPGHeQ-------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-~I~sL----LGIrhvv 143 (431)
T COG2895 84 E--------KRKFIIADTPGHEQ-------YTRNMATGASTADLAILLVDARKGVLEQTRRHS-FIASL----LGIRHVV 143 (431)
T ss_pred c--------cceEEEecCCcHHH-------HhhhhhcccccccEEEEEEecchhhHHHhHHHH-HHHHH----hCCcEEE
Confidence 2 24899999999944 344444445779999999999764433332211 11111 1126689
Q ss_pred EEEeCCCCCCh-HHHHHHHHHHH
Q 016700 301 VVLNKIDLPEA-RDRLQSLTEEI 322 (384)
Q Consensus 301 vV~NK~Dl~~~-~e~~~~l~~~~ 322 (384)
+++|||||.+- ++..+++...+
T Consensus 144 vAVNKmDLvdy~e~~F~~I~~dy 166 (431)
T COG2895 144 VAVNKMDLVDYSEEVFEAIVADY 166 (431)
T ss_pred EEEeeecccccCHHHHHHHHHHH
Confidence 99999999863 45566655544
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.72 E-value=5.4e-08 Score=93.78 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=73.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccC--CC--------CceeecceEEecCCCCCCccccCCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--YP--------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~--~~--------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~ 246 (384)
.+|.|+|.+|+|||||+|.|.+....... ++ ..++......+... ...-.+.|+||||+.+.-.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~ 78 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNID 78 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSST
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCcccccc
Confidence 47899999999999999999987543221 11 11122222222211 1123689999999865322
Q ss_pred ccc-------chhHHHHHHc-------------ccCCeEEEEeeCCCC-CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 247 LGK-------GLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 247 ~~~-------gl~~~fl~~i-------------~~ad~il~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
... -+...|..++ .|.|++||+++++.. -...++..+ ..|.. ..++|-|+.|
T Consensus 79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~m-k~Ls~------~vNvIPvIaK 151 (281)
T PF00735_consen 79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFM-KRLSK------RVNVIPVIAK 151 (281)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHH-HHHTT------TSEEEEEEST
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHH-HHhcc------cccEEeEEec
Confidence 110 1122222222 246899999998753 344555433 34442 4779999999
Q ss_pred CCCCChHHH---HHHHHHHHHhcCCc
Q 016700 306 IDLPEARDR---LQSLTEEILKIGCD 328 (384)
Q Consensus 306 ~Dl~~~~e~---~~~l~~~~~~~~~~ 328 (384)
+|....+|. .+.+.+.+...++.
T Consensus 152 aD~lt~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 152 ADTLTPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHTT--
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCce
Confidence 999875442 23333444554544
No 310
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.69 E-value=3.1e-08 Score=86.75 Aligned_cols=56 Identities=32% Similarity=0.534 Sum_probs=46.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
...+|+++|.||+|||||+|+|++... .+++.++||..+....+. ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence 356799999999999999999998764 568889999988765442 26899999996
No 311
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.6e-07 Score=90.12 Aligned_cols=167 Identities=18% Similarity=0.219 Sum_probs=102.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-----------Cc-cCCCCceeec--ce-----EEecCC-CCC-CccccCCceEE
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-----------DI-ADYPFTTLMP--NL-----GRLDGD-PTL-GAEKYSSEATL 235 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-----------~i-a~~~~tT~~p--~~-----g~v~~~-~~~-~~~~~~~~i~i 235 (384)
..|+++|.-.-|||||..+|++--. .| -.|.-+++.. .. ...... +.. ....+-+.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 5799999999999999999997421 11 1121111100 00 000000 000 00122346899
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR- 314 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~- 314 (384)
+|.||+. -|...+++-..--|..|+||.+..+.+.-+.+..+-.|+... -+.+|+|-||+||...++.
T Consensus 91 VDaPGHe-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig----ik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 91 VDAPGHE-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG----IKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred eeCCchH-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc----cceEEEEecccceecHHHHH
Confidence 9999983 233334443344588999999998666544444444444332 3779999999999876543
Q ss_pred --HHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccCcccc
Q 016700 315 --LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 315 --~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~~~~~ 354 (384)
+++++++++. ..+.++||....+++-+++.|.+.+.....
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 4444444432 245578999999999999999988865543
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.5e-07 Score=93.50 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=85.1
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCc---------cCCCCce-------------eecceEEecCCCCCCcccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------ADYPFTT-------------LMPNLGRLDGDPTLGAEKY 229 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i---------a~~~~tT-------------~~p~~g~v~~~~~~~~~~~ 229 (384)
|...-...+||-.|.||||||...|.-.--+| ...-++| +...+-.++|.+
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------- 80 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------- 80 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC-------
Confidence 34444569999999999999999986211110 1111222 111222233332
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
..+.|.||||+. .+.....+.+..+|.+|+|||+...-..+..+ |.+..+ +.+.|++-.+||+|..
T Consensus 81 -~~iNLLDTPGHe-------DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr-----lR~iPI~TFiNKlDR~ 146 (528)
T COG4108 81 -CLVNLLDTPGHE-------DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR-----LRDIPIFTFINKLDRE 146 (528)
T ss_pred -eEEeccCCCCcc-------ccchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh-----hcCCceEEEeeccccc
Confidence 268999999994 46778889999999999999998865555544 333332 3579999999999986
Q ss_pred C--hHHHHHHHHHHH
Q 016700 310 E--ARDRLQSLTEEI 322 (384)
Q Consensus 310 ~--~~e~~~~l~~~~ 322 (384)
. .-|.+.++.+.+
T Consensus 147 ~rdP~ELLdEiE~~L 161 (528)
T COG4108 147 GRDPLELLDEIEEEL 161 (528)
T ss_pred cCChHHHHHHHHHHh
Confidence 4 335555555554
No 313
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.67 E-value=5.1e-08 Score=97.24 Aligned_cols=87 Identities=25% Similarity=0.340 Sum_probs=59.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC------CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~------~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
..+|.+||.+|||||||+|+|.+.. +.++++|+||+......+. ..+.++||||+........
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~ 222 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAH 222 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhh
Confidence 3589999999999999999999853 3568899999987654431 2578999999986432222
Q ss_pred chhHHHHHHc---ccCCeEEEEeeCCC
Q 016700 250 GLGRNFLRHL---RRTRLLVHVIDAAA 273 (384)
Q Consensus 250 gl~~~fl~~i---~~ad~il~VvD~s~ 273 (384)
-+....++++ ++.....|.+|...
T Consensus 223 ~l~~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 223 YLDKKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred hcCHHHHhhcCCCCccCceEEEeCCCC
Confidence 2222223332 33566677777554
No 314
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.67 E-value=6.9e-08 Score=92.08 Aligned_cols=153 Identities=19% Similarity=0.274 Sum_probs=89.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcC------CCC---c-cCCCCce--------------eecceEEecCC--CCCCc-----
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA------KPD---I-ADYPFTT--------------LMPNLGRLDGD--PTLGA----- 226 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~------~~~---i-a~~~~tT--------------~~p~~g~v~~~--~~~~~----- 226 (384)
.|+|.|.||||||||+..|... +.. | ...|||- .+|+...-... .....
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at 132 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRAT 132 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHH
Confidence 7999999999999999998742 121 2 1223321 12222211110 00000
Q ss_pred -------cccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCE
Q 016700 227 -------EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF 299 (384)
Q Consensus 227 -------~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ 299 (384)
.-++..++|+.|-|.-.. =..-..-||.+++|.=....+..+.++.=.-|+ -=
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQs----------ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi----------aD 192 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQS----------EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEI----------AD 192 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcc----------hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhh----------hh
Confidence 001235788888776432 122235589988888766666555444322222 23
Q ss_pred EEEEeCCCCCChHHHHHHHHHHHHhc-------CCc----ccccccccCHHHHHHHHHhccC
Q 016700 300 IVVLNKIDLPEARDRLQSLTEEILKI-------GCD----KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 300 ivV~NK~Dl~~~~e~~~~l~~~~~~~-------~~~----~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+|+||+|+..++....++...+... +|. .+++..++|+.++++.+.++..
T Consensus 193 i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 193 IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 99999999877655555554444322 333 5688889999999999887653
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5.2e-07 Score=89.98 Aligned_cols=151 Identities=20% Similarity=0.138 Sum_probs=106.5
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
|+..|.---|||||+.++++....+ ...-++|++......+... ..+.|+|.||+.+ +-...
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--------~~~~fIDvpgh~~-------~i~~m 67 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--------GVMGFIDVPGHPD-------FISNL 67 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--------CceEEeeCCCcHH-------HHHHH
Confidence 7788999999999999999876433 3356788887776665543 2789999999944 45556
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-----HhcCCccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKIGCDKV 330 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~-----~~~~~~~~ 330 (384)
+..+.-.|..++|||+.+.-..+..+.+ ..|..+. -+..++|+||+|+.+.....+.+.+.+ ....+..+
T Consensus 68 iag~~~~d~alLvV~~deGl~~qtgEhL-~iLdllg----i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 68 LAGLGGIDYALLVVAADEGLMAQTGEHL-LILDLLG----IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred HhhhcCCceEEEEEeCccCcchhhHHHH-HHHHhcC----CCceEEEEeccccccHHHHHHHHHHHHhhccccccccccc
Confidence 6667788999999999776555554433 2344322 244699999999987543222222222 23345678
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
++.++.|++++-..|.+..
T Consensus 143 s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 143 SAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccccCCCHHHHHHHHHHhh
Confidence 9999999999998887665
No 316
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=4.3e-08 Score=94.84 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=48.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
...+|+|+|.||||||||+|+|.+.+. .+++.|++|.....-.+ . ..+.++||||+....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G---------KGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C---------CcEEEEECCCcCCCC
Confidence 346799999999999999999999875 66899999998764333 1 268999999997643
No 317
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=3.4e-07 Score=84.62 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=82.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-------c-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-------I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 248 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-------i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~ 248 (384)
+.|.+||.++.|||||+|.|+.++.. . .++|-||....+..+-.+. ...-+++++||||+.+.-...
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~-----gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEK-----GVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeec-----ceEEEEEEecCCCcccccCcc
Confidence 57999999999999999999865421 1 2455555433333221111 112378999999996632110
Q ss_pred c-------chhHHHH------------HHc--ccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 249 K-------GLGRNFL------------RHL--RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 249 ~-------gl~~~fl------------~~i--~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
. -+..++. ++| .|.+++||.+..+... ..-+++.+...-+ -..++-|+-|+
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-------vvNvvPVIaka 194 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-------VVNVVPVIAKA 194 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-------hheeeeeEeec
Confidence 0 0111111 222 2568999999987632 2233333322211 24578899999
Q ss_pred CCCChHH---HHHHHHHHHHhcCCcccc
Q 016700 307 DLPEARD---RLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 307 Dl~~~~e---~~~~l~~~~~~~~~~~~s 331 (384)
|-..-+| ..+.+.+.+...++...+
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 9764333 344556667777766554
No 318
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=5e-08 Score=93.83 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=47.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC-CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~-~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
..+|+++|.||+|||||+|+|++.+ ..+++.|++|..+....+ . ..+.++||||+...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S---------DGLELLDTPGILWP 176 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C---------CCEEEEECCCcccC
Confidence 4679999999999999999999876 456889999987764433 1 26899999999654
No 319
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.62 E-value=6.1e-08 Score=83.60 Aligned_cols=54 Identities=39% Similarity=0.545 Sum_probs=43.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 242 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~ 242 (384)
+++++|.||+|||||+|+|.+.+. .++..+++|.+.....+ + ..+.||||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T---------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C---------CCEEEEECCCcC
Confidence 799999999999999999998764 55777888876554333 2 268999999984
No 320
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.4e-07 Score=86.63 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=95.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-------ccCCCCceeecceEEecCCC---CCCccccCCceEEEeCCCCccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-------IADYPFTTLMPNLGRLDGDP---TLGAEKYSSEATLADLPGLIEGAH 246 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-------ia~~~~tT~~p~~g~v~~~~---~~~~~~~~~~i~i~DtPG~~~~a~ 246 (384)
.+++++|.-.+|||||.++|+.-... .+...+.|++--...+.... .....++ +++++|.||+
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~l--q~tlvDCPGH----- 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQL--QFTLVDCPGH----- 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccc--eeEEEeCCCc-----
Confidence 57999999999999999999853211 12223445544333332211 0011112 6899999998
Q ss_pred cccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHH----
Q 016700 247 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL---- 318 (384)
Q Consensus 247 ~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l-~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l---- 318 (384)
.++-+..+-...-.|+.++|||+...-..+..+.+ +-++ .-+..+||+||+|+..+. ..++++
T Consensus 81 --asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 81 --ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred --HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 34555555545567999999999875443333322 2222 235679999999987652 223333
Q ss_pred HHHHHhcCC------cccccccc----cCHHHHHHHHHhccCcc
Q 016700 319 TEEILKIGC------DKVTSETE----LSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 319 ~~~~~~~~~------~~~sa~t~----~gv~e~l~~l~~~~~~~ 352 (384)
++-++..++ .++++..+ +.+.++...|.+.+.+.
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 333444443 35677777 66777777776665443
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.59 E-value=4.6e-07 Score=83.30 Aligned_cols=156 Identities=12% Similarity=0.116 Sum_probs=85.9
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCC---CC--c-cCCCCceeecc--------eEEecCCCCC-----------C-c
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAK---PD--I-ADYPFTTLMPN--------LGRLDGDPTL-----------G-A 226 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~---~~--i-a~~~~tT~~p~--------~g~v~~~~~~-----------~-~ 226 (384)
-..++.|+|+|++|+|||||++++.... .+ + ..-+..+.+.. .-.+...... . .
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 3457789999999999999999997541 11 1 11111111110 0001100000 0 0
Q ss_pred cccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 227 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 227 ~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
......++|++|.|...... .+ ....+..+.|+|+.+.+... ..... ...+|.++|+||+
T Consensus 99 ~~~~~d~IiIEt~G~l~~~~-------~~---~~~~~~~i~Vvd~~~~d~~~-----~~~~~-----~~~~a~iiv~NK~ 158 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCPA-------DF---DLGEHMRVVLLSVTEGDDKP-----LKYPG-----MFKEADLIVINKA 158 (207)
T ss_pred ccCCCCEEEEecCCCcCCCc-------cc---ccccCeEEEEEecCcccchh-----hhhHh-----HHhhCCEEEEEHH
Confidence 00123688899988322110 11 11245556788887543211 11111 1247889999999
Q ss_pred CCCChH-HHHHHHHHHHHh----cCCcccccccccCHHHHHHHHHhc
Q 016700 307 DLPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 307 Dl~~~~-e~~~~l~~~~~~----~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
|+.... ...+.+.+.++. ..+..+|+.++.|++++++++...
T Consensus 159 Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 159 DLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 997531 223344444433 346678999999999999998754
No 322
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=3.7e-07 Score=93.56 Aligned_cols=147 Identities=21% Similarity=0.275 Sum_probs=88.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC---------------CCc--cCC--------------CCceeecceEEecCCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK---------------PDI--ADY--------------PFTTLMPNLGRLDGDPT 223 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~---------------~~i--a~~--------------~~tT~~p~~g~v~~~~~ 223 (384)
.....+++|..+||||||+-+|.-.- ... +.+ .+.|.+.....++..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 45578999999999999999986310 001 111 122222222223211
Q ss_pred CCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCC------CCHhHHHHHHHHHHhcCCCCCCC
Q 016700 224 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPDYLER 297 (384)
Q Consensus 224 ~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~------~~~~~~~~l~~eL~~~~~~l~~~ 297 (384)
...++|+|+||+.+ |......-+..||+.++|||++.. ++..+.+.....|+.+. -.
T Consensus 254 ------~~~~tliDaPGhkd-------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg----i~ 316 (603)
T KOG0458|consen 254 ------SKIVTLIDAPGHKD-------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG----IS 316 (603)
T ss_pred ------ceeEEEecCCCccc-------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC----cc
Confidence 23699999999743 444555566779999999999862 22223333333444332 35
Q ss_pred CEEEEEeCCCCCC-hHHHHHHHHHHHH-----hc-------CCcccccccccCHHH
Q 016700 298 PFIVVLNKIDLPE-ARDRLQSLTEEIL-----KI-------GCDKVTSETELSSED 340 (384)
Q Consensus 298 p~ivV~NK~Dl~~-~~e~~~~l~~~~~-----~~-------~~~~~sa~t~~gv~e 340 (384)
..||++||+|+.+ .+++++++...+. .+ .|.++|.-+++++-.
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 6899999999874 4566666665442 22 344666666666543
No 323
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.58 E-value=9.7e-08 Score=87.71 Aligned_cols=121 Identities=21% Similarity=0.192 Sum_probs=84.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.||.|+|.+|+|||||=..+.....+- ...++.|++...+.+.+-+. --+.+||..|+.+ +-..+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-------l~LnlwDcGgqe~-------fmen~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-------LVLNLWDCGGQEE-------FMENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-------heeehhccCCcHH-------HHHHH
Confidence 479999999999999988776443222 34567787776666654432 1478899999843 22222
Q ss_pred HH-----HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 256 LR-----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 256 l~-----~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
++ -+...++++||+|++..+...++......|+.+........+.+.+.|+|+...
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 22 246679999999999987777777766656554433345678999999999754
No 324
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.53 E-value=2e-07 Score=80.52 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=99.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCce-eecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT-~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+++|.+..|||||+-...+..... .+.-++ +......+..... .-.+.|||..|..+. ....
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t------~IsfSIwdlgG~~~~-------~n~l 86 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGT------DISFSIWDLGGQREF-------INML 86 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecce------EEEEEEEecCCcHhh-------hccC
Confidence 589999999999999998887654321 110000 0000111111110 126899999998531 1111
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--hHHHHHHHHHH---H-Hh--cCC
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARDRLQSLTEE---I-LK--IGC 327 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~--~~e~~~~l~~~---~-~~--~~~ 327 (384)
--....+-++||++|.+.+.+...+..|+..-+.++. .-.| |+|++|-|+.- ..+..+.+..+ + +. ..+
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL 163 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASL 163 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcE
Confidence 1223567899999999999999999999888776653 3356 67899998631 12222222222 2 22 256
Q ss_pred cccccccccCHHHHHHHHHhccCccc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
.++++....+++..|..+..++....
T Consensus 164 ~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 164 FFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred EEeeccccccHHHHHHHHHHHHhCCc
Confidence 68888889999999998887775543
No 325
>PRK13796 GTPase YqeH; Provisional
Probab=98.52 E-value=1.2e-07 Score=94.83 Aligned_cols=58 Identities=38% Similarity=0.418 Sum_probs=44.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC------CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~------~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
..++.+||.||||||||||+|.... ..+++.|+||++.....+. ....++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCcccc
Confidence 3479999999999999999998542 2358899999987654432 24689999999753
No 326
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.52 E-value=7.1e-07 Score=81.78 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=59.2
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
..++++|.|..- ...+...+ ++.++.|+|+.+.+..... ....+ ...-++|+||+|+.+.
T Consensus 93 D~iiIEt~G~~l--------~~~~~~~l--~~~~i~vvD~~~~~~~~~~--~~~qi--------~~ad~~~~~k~d~~~~ 152 (199)
T TIGR00101 93 EMVFIESGGDNL--------SATFSPEL--ADLTIFVIDVAAGDKIPRK--GGPGI--------TRSDLLVINKIDLAPM 152 (199)
T ss_pred CEEEEECCCCCc--------ccccchhh--hCcEEEEEEcchhhhhhhh--hHhHh--------hhccEEEEEhhhcccc
Confidence 577888888421 11111122 5779999999864432110 01111 1233899999999742
Q ss_pred -HHHHHHHHHHHHh----cCCcccccccccCHHHHHHHHHhcc
Q 016700 312 -RDRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 312 -~e~~~~l~~~~~~----~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
....+.+.+.++. ..+.++|+.++.|++++++++.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 153 VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 1223333333333 3566899999999999999998654
No 327
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.3e-07 Score=95.94 Aligned_cols=119 Identities=27% Similarity=0.341 Sum_probs=80.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC-C-----ccCCCCceeecc-----------eEEecCCCCCCccccCCceEEEe
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP-D-----IADYPFTTLMPN-----------LGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~-~-----ia~~~~tT~~p~-----------~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
.+..|+++|+-.+|||+|+..|....- . -++.-+|+..+. --++-..+. ..-+.-++++|
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~---~~KS~l~nilD 203 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS---KGKSYLMNILD 203 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC---cCceeeeeeec
Confidence 456799999999999999999986531 1 122122221110 001110100 01112489999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
|||+.. +.......++-+|++++|+|+.....++.-+.+...++ .+.|+++|+||+|++
T Consensus 204 TPGHVn-------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVN-------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL 262 (971)
T ss_pred CCCccc-------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHH
Confidence 999965 45566777888999999999999887777666666665 368999999999963
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.9e-06 Score=81.85 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=85.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC-----------Cc-----cCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP-----------DI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~-----------~i-----a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|.-.+|+.+|.-+-|||||..+|+..-. .| ....+.|+.+....++... ..+..+|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--------rhyahVD 81 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--------RHYAHVD 81 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--------ceEEecc
Confidence 4456899999999999999999974210 11 1123556655444443332 3688999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~~ 316 (384)
.||+-++ ....+.-....|..|+|+.+++....+..+.++ |.. ....| +++++||+|+.+.++.++
T Consensus 82 cPGHaDY-------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--lar----qvGvp~ivvflnK~Dmvdd~elle 148 (394)
T COG0050 82 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LAR----QVGVPYIVVFLNKVDMVDDEELLE 148 (394)
T ss_pred CCChHHH-------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhh----hcCCcEEEEEEecccccCcHHHHH
Confidence 9999553 344444456679999999999855444433222 111 13565 778899999998655444
Q ss_pred ----HHHHHHHhcCCc
Q 016700 317 ----SLTEEILKIGCD 328 (384)
Q Consensus 317 ----~l~~~~~~~~~~ 328 (384)
++++.+..+++.
T Consensus 149 lVemEvreLLs~y~f~ 164 (394)
T COG0050 149 LVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 344566667665
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.48 E-value=2.8e-07 Score=82.04 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=44.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
..+|+++|.+|+|||||+|+|.+... .+++.++||.......+. ..+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence 35799999999999999999998764 557888999876654432 26899999997
No 330
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.47 E-value=1.2e-07 Score=95.67 Aligned_cols=58 Identities=34% Similarity=0.445 Sum_probs=48.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC-CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~-~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
...||+||+|||||||+||+|.+.+ +.++..|+.|.+.+.-.++ ..+.+.|+||++-.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----------~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----------PSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----------CCceecCCCCcccc
Confidence 4679999999999999999999987 4679999999877765543 36899999999753
No 331
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.7e-07 Score=83.60 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=102.0
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCce---eecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT---LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT---~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
.+.+++++|..+.||+|++++....+... .|+-|+ ..|.+..-+. .. -++..|||.|+.... ++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~pl~f~tn~------g~--irf~~wdtagqEk~g----gl 75 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHPLLFDTNR------GQ--IRFNVWDTAGQEKKG----GL 75 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccccee-cccCcceeEEeeeeeeccc------Cc--EEEEeeecccceeec----cc
Confidence 46789999999999999999987654322 112111 1111111000 01 278999999985421 11
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHH-HHHHhcCCccc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT-EEILKIGCDKV 330 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~-~~~~~~~~~~~ 330 (384)
.+ -.+|. +.+.++++|++...+......|...+..-. .+.|+++++||.|........+.+. -.-..+...+.
T Consensus 76 rd--gyyI~-~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~i 149 (216)
T KOG0096|consen 76 RD--GYYIQ-GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEI 149 (216)
T ss_pred cc--ccEEe-cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccccccccccceeeecccceeEEe
Confidence 11 12343 567788999998888888888887776544 3689999999999875431111111 11134456688
Q ss_pred ccccccCHHHHHHHHHhccCc
Q 016700 331 TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~ 351 (384)
|+++.-+.+..|.+++.++..
T Consensus 150 Saksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred ecccccccccchHHHhhhhcC
Confidence 999999999999999988643
No 332
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.41 E-value=3.4e-06 Score=82.64 Aligned_cols=130 Identities=20% Similarity=0.199 Sum_probs=74.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC----ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc---
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD----IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--- 249 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~----ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~--- 249 (384)
..|.++|..|.|||||+|.|.+.... +.+.......|.+-.......+....+.-.++++||||+.+.-.-..
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 56899999999999999999986321 11111111112111111111111112334799999999987532211
Q ss_pred ----chhHHHHHHc--------------ccCCeEEEEeeCCCC-CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 250 ----GLGRNFLRHL--------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 250 ----gl~~~fl~~i--------------~~ad~il~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
-+..+|-.++ .|.|++||++-.+.. -..-++..+. .|.. ..-+|-|+-|+|...
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk-~ls~------~vNlIPVI~KaD~lT 176 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK-RLSK------RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHH-HHhc------ccCeeeeeeccccCC
Confidence 1222232222 256899999997763 3344554443 3332 366889999999987
Q ss_pred hHH
Q 016700 311 ARD 313 (384)
Q Consensus 311 ~~e 313 (384)
.+|
T Consensus 177 ~~E 179 (373)
T COG5019 177 DDE 179 (373)
T ss_pred HHH
Confidence 655
No 333
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.40 E-value=1.1e-06 Score=82.03 Aligned_cols=92 Identities=20% Similarity=0.001 Sum_probs=58.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC--CCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~--~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
+.-|+++|.+++|||||+|.|.+. ...+ .....||............ .-...++++||||+.+..... ...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-----~~~~~v~~lDteG~~~~~~~~-~~~ 80 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-----GKEHAVLLLDTEGTDGRERGE-FED 80 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-----CCcceEEEEecCCcCccccCc-hhh
Confidence 456999999999999999999998 4444 3345666654444332211 001379999999997653321 012
Q ss_pred HHHHHHcc--cCCeEEEEeeCCC
Q 016700 253 RNFLRHLR--RTRLLVHVIDAAA 273 (384)
Q Consensus 253 ~~fl~~i~--~ad~il~VvD~s~ 273 (384)
...+..+. -++++||.++...
T Consensus 81 ~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 81 DARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred hhHHHHHHHHHhCEEEEeccCcc
Confidence 22223333 3899999998764
No 334
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.40 E-value=1.4e-07 Score=90.69 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=39.0
Q ss_pred CCCCEEEEEeCCCCCCh-HHHHHHHHHHHHhc----CCcccccccccCHHHHHHHHHh
Q 016700 295 LERPFIVVLNKIDLPEA-RDRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 295 ~~~p~ivV~NK~Dl~~~-~e~~~~l~~~~~~~----~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
...+-++|+||+|+.+. ...++.+.+.++.+ .+..+|+.++.|+++++++|.+
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45777999999999753 22344555555443 4557899999999999999875
No 335
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.37 E-value=8.5e-07 Score=78.20 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=41.6
Q ss_pred CCceEEEeCCCCccccccccc-hhHHHHHHcccCCeEEEEeeCCCCCC-HhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKG-LGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~g-l~~~fl~~i~~ad~il~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
..+.+++||||+.+....-.. +....+....+.+.+++|+|+..... ......+...+.. --++|+||+|
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivlnk~d 157 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLNKTD 157 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEeccc
Confidence 347899999999764321111 11122345567899999999865211 1112334444442 2278999999
Q ss_pred C
Q 016700 308 L 308 (384)
Q Consensus 308 l 308 (384)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.32 E-value=1.2e-06 Score=76.54 Aligned_cols=55 Identities=33% Similarity=0.489 Sum_probs=40.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 241 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~ 241 (384)
..+|+++|.+|+|||||+|+|.+... .+++.+.+|........ + ..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~--~---------~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI--T---------SKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc--C---------CCEEEEECcCC
Confidence 45799999999999999999997653 34667777765432222 1 26899999996
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.30 E-value=3.1e-06 Score=79.98 Aligned_cols=156 Identities=20% Similarity=0.155 Sum_probs=88.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc---cccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG---AHLG 248 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~---a~~~ 248 (384)
..++++++|.+|+|||||||.++..+..- ...++-|...+...+ +.++.++|.||+-.. ....
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~a~y~~~~~ 203 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGRAGYGFELP 203 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCcccccCCccCc
Confidence 34789999999999999999999765321 224444544333332 247999999994321 0111
Q ss_pred cchhHHHHHHc-ccC--CeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--------HH---
Q 016700 249 KGLGRNFLRHL-RRT--RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------DR--- 314 (384)
Q Consensus 249 ~gl~~~fl~~i-~~a--d~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--------e~--- 314 (384)
+.+......|+ +|- -.+.+++|++-+-..-+...+ +.+.+ .+.|+.+|+||||....- ..
T Consensus 204 ~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i-~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 204 ADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEI-AWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred chHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHH-HHHhh-----cCCCeEEeeehhhhhhhccccccCcccccee
Confidence 22333333333 332 334677888765443333222 23333 469999999999975321 11
Q ss_pred -HHHHHHHH--HhcCCcccccccccCHHHHHHHHHh
Q 016700 315 -LQSLTEEI--LKIGCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 315 -~~~l~~~~--~~~~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
...+...+ ....|..+++-+..|.++++..++.
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 11111111 1123445677788888887766653
No 338
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=5.6e-06 Score=78.30 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=65.4
Q ss_pred HcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Cccccccc
Q 016700 258 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSET 334 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--~~~~sa~t 334 (384)
++..+|.+++|+|++++. +++.+..|+..+.. .+.|+++|+||+||....+...++.+.+...+ +..+|+++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 578899999999999766 67777777665543 36899999999999754443334455555555 45789999
Q ss_pred ccCHHHHHHHHHhc
Q 016700 335 ELSSEDAVKSLSTE 348 (384)
Q Consensus 335 ~~gv~e~l~~l~~~ 348 (384)
+.+++++++.+...
T Consensus 108 g~gi~eLf~~l~~~ 121 (245)
T TIGR00157 108 QDGLKELIEALQNR 121 (245)
T ss_pred chhHHHHHhhhcCC
Confidence 99999999988754
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.2e-06 Score=87.00 Aligned_cols=57 Identities=28% Similarity=0.291 Sum_probs=40.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCC-CccCCC-------CceeecceEEecCCCCCCccccCCceEEEeCCCCcccc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~-------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
-++|+|.||||||||||+|.+... .+++.+ .||....+..+.. ...|+||||+.+-.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCccc
Confidence 379999999999999999997643 333333 3666555544421 34699999998743
No 340
>PRK12289 GTPase RsgA; Reviewed
Probab=98.22 E-value=1.5e-06 Score=86.42 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=40.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC-CCccCCCC-------ceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~-~~ia~~~~-------tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
-++|+|.||||||||||+|.+.. ..++..+. ||....+..+. ....|+||||+.+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-----------~g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-----------NGGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-----------CCcEEEeCCCcccc
Confidence 37999999999999999999764 33455555 67666544332 13489999999764
No 341
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=3.1e-05 Score=76.42 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=73.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC----c---cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc-
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD----I---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 248 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~----i---a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~- 248 (384)
..+.++|..|.|||||+|.|...... + ...+-.|+......+...+ ..+.-.++++||||+.+.-...
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee----~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE----NGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC----CCeEEeeEEeccCCCcccccccc
Confidence 46889999999999999999876321 1 1111112222111111111 1122378999999997643211
Q ss_pred ------cchhHHHHHHc-----------c--cCCeEEEEeeCCCC-CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 249 ------KGLGRNFLRHL-----------R--RTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 249 ------~gl~~~fl~~i-----------~--~ad~il~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
.-+...|..++ . |.|++||++..+.. -..-++..+. .|. ....+|-|+-|+|.
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk-~l~------~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMK-KLS------KKVNLIPVIAKADT 170 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHH-HHh------ccccccceeecccc
Confidence 11223333332 2 67999999998764 3334444332 333 24778999999999
Q ss_pred CChHH
Q 016700 309 PEARD 313 (384)
Q Consensus 309 ~~~~e 313 (384)
...+|
T Consensus 171 lT~~E 175 (366)
T KOG2655|consen 171 LTKDE 175 (366)
T ss_pred CCHHH
Confidence 87655
No 342
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.17 E-value=1.2e-05 Score=70.21 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=58.0
Q ss_pred HHHHHccc-CCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCccc
Q 016700 254 NFLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKV 330 (384)
Q Consensus 254 ~fl~~i~~-ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~--~~~~~ 330 (384)
..++|+.+ ||++|+|+|++++....+. .+...+.. .++|+++|+||+|+....+ .+.+....... .+..+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-----CCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEEE
Confidence 34566654 9999999999875443332 23222321 3589999999999975432 22322222222 34577
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.+++++++.+.+.+
T Consensus 77 Sa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 77 SAKERLGTKILRRTIKELA 95 (156)
T ss_pred EccccccHHHHHHHHHHHH
Confidence 9999999999999988654
No 343
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.4e-05 Score=81.80 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=83.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceee--------cceEEecCCC-----------------------
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--------PNLGRLDGDP----------------------- 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~--------p~~g~v~~~~----------------------- 222 (384)
+.-.+|+|.|..++||||++|++...+.-.+....||-- -..++.-.+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 455799999999999999999998766443332223310 0000000000
Q ss_pred -----------CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcC
Q 016700 223 -----------TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN 291 (384)
Q Consensus 223 -----------~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~ 291 (384)
...-.-..+.+.++|.||+.-+ ..+.....++...+|++|||+.+.+..+..+...+ ..-.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~----se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff----~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD----SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFF----HKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc----hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHH----HHhh
Confidence 0000001236899999999754 22344556778999999999998765444433322 2212
Q ss_pred CCCCCCC-EEEEEeCCCCCCh-HHHHHHHHHHHHhc
Q 016700 292 PDYLERP-FIVVLNKIDLPEA-RDRLQSLTEEILKI 325 (384)
Q Consensus 292 ~~l~~~p-~ivV~NK~Dl~~~-~e~~~~l~~~~~~~ 325 (384)
..+| +.|+-||+|.... ++..+.+.++..++
T Consensus 259 ---~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL 291 (749)
T KOG0448|consen 259 ---EEKPNIFILNNKWDASASEPECKEDVLKQIHEL 291 (749)
T ss_pred ---ccCCcEEEEechhhhhcccHHHHHHHHHHHHhc
Confidence 2355 7777888898654 45555565554433
No 344
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=5.3e-06 Score=74.99 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=59.0
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-----Hhc
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKI 325 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~-----~~~ 325 (384)
+...+..+++++|++++|+|+++...... .++.. ...++|+++|+||+|+....+..+.+.... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~---~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRL---FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc-----hhHHH---hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 34556677899999999999987542211 11111 113689999999999874322122222111 222
Q ss_pred -----CCcccccccccCHHHHHHHHHhcc
Q 016700 326 -----GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 326 -----~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+..+|+.++.|++++++.|...+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 245689999999999999998754
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.13 E-value=1.3e-05 Score=70.13 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=58.5
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC-C--ccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-C--DKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~-~--~~~sa 332 (384)
++.++.+|++++|+|++.+.... ...+...+... ..++|+++|+||+|+.+.++ ...+...+.+.. + ..+|+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa 77 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc---cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeec
Confidence 46789999999999998753322 23344444432 12589999999999976443 344444444332 2 34677
Q ss_pred ccccCHHHHHHHHHhc
Q 016700 333 ETELSSEDAVKSLSTE 348 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~ 348 (384)
..+.+++++++.+.+.
T Consensus 78 ~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 78 NNPFGKGSLIQLLRQF 93 (157)
T ss_pred cccccHHHHHHHHHHH
Confidence 8889999999888654
No 346
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.12 E-value=2.6e-06 Score=80.52 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=39.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-CccC-------CCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-DIAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~ia~-------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
..++|+|.+|||||||||+|.+... .+++ ...||.....-.+ . ...|+||||+.+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~----------~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H----------GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C----------CcEEEeCCCcccc
Confidence 3689999999999999999997542 2222 3347766655443 1 3479999999764
No 347
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.05 E-value=3e-06 Score=83.52 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=50.6
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 246 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~ 246 (384)
+|+...+|+|||+||+||||+||+|...+. .+++.|+.|..-..-. .+ ..+.|+|.||++-...
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--Ld---------k~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--LD---------KKIRLLDSPGIVPPSI 312 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--cc---------CCceeccCCceeecCC
Confidence 478889999999999999999999998876 4588888776544332 22 3799999999986543
No 348
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.04 E-value=7.8e-06 Score=73.77 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=47.2
Q ss_pred eEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHH----hcCCcccccccccCH
Q 016700 264 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL----KIGCDKVTSETELSS 338 (384)
Q Consensus 264 ~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~----~~~~~~~sa~t~~gv 338 (384)
+-|+|+|++..+-.- ++-.|.+. +.=++|+||.||.+.-+. ++.+.+..+ ...+.+++.++++|+
T Consensus 120 ~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 120 LRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 678999988743210 11122222 256899999999753221 233333333 345778999999999
Q ss_pred HHHHHHHHhc
Q 016700 339 EDAVKSLSTE 348 (384)
Q Consensus 339 ~e~l~~l~~~ 348 (384)
++.++++...
T Consensus 190 ~~~~~~i~~~ 199 (202)
T COG0378 190 DEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 349
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.00 E-value=6.7e-06 Score=72.67 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=35.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-C---cc----CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-D---IA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~---ia----~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
..++|+|.+|||||||+|+|..... . ++ .--.||....+..+. ....|+||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCcc
Confidence 6799999999999999999998631 1 21 123444444443331 25789999999764
No 350
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=1.2e-05 Score=78.33 Aligned_cols=57 Identities=30% Similarity=0.302 Sum_probs=39.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-CccCCC-------CceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~-------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
...++|+|.+|||||||+|+|.+... ..+..+ .||..+....+. ....|+||||+.+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCc
Confidence 34689999999999999999997643 223322 356555444332 1458999999975
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.97 E-value=3.2e-05 Score=68.83 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=60.0
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCcc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDK 329 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~--~~~~ 329 (384)
.....+.++.||++++|+|++.+....+.. +...+ .++|+++|+||+|+....+ ...+.+.++.. .+..
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADPKK-TKKWLKYFESKGEKVLF 80 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcCCeEEE
Confidence 344567889999999999998654332221 22222 2589999999999975432 23333444332 2357
Q ss_pred cccccccCHHHHHHHHHhcc
Q 016700 330 VTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~ 349 (384)
+|+.++.+++++...+...+
T Consensus 81 iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EECCCcccHHHHHHHHHHHH
Confidence 89999999999999887754
No 352
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.96 E-value=1.6e-05 Score=90.61 Aligned_cols=140 Identities=22% Similarity=0.196 Sum_probs=74.6
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceee-cceEEecCCCCCCccccCCceEEEeCCCCccccc----c
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----L 247 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~-p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~----~ 247 (384)
|-.++=..|||.||+||||||+.- +-+....+....+.. ..-++-+.+. .+.++.+++||+|..-... .
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~ 181 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccc
Confidence 334556889999999999999976 333222111000000 0000101111 1345789999999543211 1
Q ss_pred ccchhHHHHHHc------ccCCeEEEEeeCCCCC--CHh----HHHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCh-HH
Q 016700 248 GKGLGRNFLRHL------RRTRLLVHVIDAAAEN--PVN----DYRTVKEELRMYNPDY-LERPFIVVLNKIDLPEA-RD 313 (384)
Q Consensus 248 ~~gl~~~fl~~i------~~ad~il~VvD~s~~~--~~~----~~~~l~~eL~~~~~~l-~~~p~ivV~NK~Dl~~~-~e 313 (384)
.......|+..+ +..+.||++||+++-. ..+ ....++..|.+....+ ...|+.||++|||+... .+
T Consensus 182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF~~ 261 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFEE 261 (1169)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCHHH
Confidence 222344555554 3369999999987621 111 1123333333222111 36999999999998754 33
Q ss_pred HHHHH
Q 016700 314 RLQSL 318 (384)
Q Consensus 314 ~~~~l 318 (384)
....+
T Consensus 262 ~f~~l 266 (1169)
T TIGR03348 262 FFADL 266 (1169)
T ss_pred HHHhC
Confidence 33333
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=5.5e-05 Score=79.85 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=82.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccC-CCCcee------ecc-------eEEecCCCCCCccccCCceEEEeCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTL------MPN-------LGRLDGDPTLGAEKYSSEATLADLPG 240 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~-~~~tT~------~p~-------~g~v~~~~~~~~~~~~~~i~i~DtPG 240 (384)
.+..|+++-.-.-|||||...|...+-.|+. .+++-. +.+ ...+.+.. . ...+.++|+||
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~----~--~~~~nlidspg 81 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH----K--DYLINLIDSPG 81 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc----C--ceEEEEecCCC
Confidence 3557999999999999999999877654422 222111 000 11111100 1 12589999999
Q ss_pred CccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC------ChHHH
Q 016700 241 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP------EARDR 314 (384)
Q Consensus 241 ~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~------~~~e~ 314 (384)
+++.. ........-||..+++||+-..-..+.+..+++.... +...++|+||+|.+ ...|.
T Consensus 82 hvdf~-------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidrl~~el~lsp~ea 148 (887)
T KOG0467|consen 82 HVDFS-------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDRLITELKLSPQEA 148 (887)
T ss_pred ccchh-------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhhHHHHHhcChHHH
Confidence 98753 3344556679999999999987777777766665542 45679999999932 33454
Q ss_pred HHHHHHHH
Q 016700 315 LQSLTEEI 322 (384)
Q Consensus 315 ~~~l~~~~ 322 (384)
+..+....
T Consensus 149 ~~~l~r~i 156 (887)
T KOG0467|consen 149 YEHLLRVI 156 (887)
T ss_pred HHHHHHHH
Confidence 44444433
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=2.6e-05 Score=79.72 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=77.3
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
=|++||+||+||||||..|...-. -.|++...|.+..... -..+++++.+|-- .+.+..
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~t------k~ti~~i~GPiTvvsg-----K~RRiTflEcp~D----------l~~miD 129 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFT------KQTIDEIRGPITVVSG-----KTRRITFLECPSD----------LHQMID 129 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH------HhhhhccCCceEEeec-----ceeEEEEEeChHH----------HHHHHh
Confidence 377999999999999999986521 2234333333322110 1237999999843 123445
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHHHHHHHH
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEEI 322 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~~~l~~~~ 322 (384)
-..-||++|++||..-....+.++.|. .+.. ...| ++-|++..|+......+....+.+
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFLn-il~~-----HGmPrvlgV~ThlDlfk~~stLr~~KKrl 189 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFLN-ILIS-----HGMPRVLGVVTHLDLFKNPSTLRSIKKRL 189 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHHH-HHhh-----cCCCceEEEEeecccccChHHHHHHHHHH
Confidence 556689999999998766666665443 3333 2345 788999999988766666666544
No 355
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.93 E-value=4.5e-05 Score=65.63 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=50.8
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKV 330 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~--~~~ 330 (384)
..+++++++||++++|+|+.++....+ ..+.+.+.... .++|+++|+||+|+.... ....+.+.++..+. .++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~~ii~i 77 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKADLLTEE-QRKAWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechhcCCHH-HHHHHHHHHHhcCCeEEEE
Confidence 457899999999999999987654432 23334444321 368999999999997543 34455555655443 345
Q ss_pred ccccc
Q 016700 331 TSETE 335 (384)
Q Consensus 331 sa~t~ 335 (384)
|+.++
T Consensus 78 Sa~~~ 82 (141)
T cd01857 78 SALKE 82 (141)
T ss_pred EecCC
Confidence 55443
No 356
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.92 E-value=0.00015 Score=63.33 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=38.4
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
..++|+||||... .+...+..||.+++|...+ ..+.+..+..++- ..--++|+||+|
T Consensus 92 ~D~iiIDtaG~~~----------~~~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~~~-------~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ----------SEVDIASMADTTVVVMAPG---AGDDIQAIKAGIM-------EIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh----------hhhhHHHhCCEEEEEECCC---chhHHHHhhhhHh-------hhcCEEEEeCCC
Confidence 3799999999743 2344677799999988765 3444444433332 244589999998
No 357
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.91 E-value=5.4e-06 Score=81.58 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=47.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
.-.-|++||+||+||||+||.|-..+. .+++.|+.|.-.+.-++ -.+|.++|+||+.-..
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-----------mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-----------MKRIFLIDCPGVVYPS 366 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-----------HhceeEecCCCccCCC
Confidence 345799999999999999999998876 45999998875544332 1378999999997543
No 358
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.90 E-value=4e-05 Score=68.82 Aligned_cols=137 Identities=20% Similarity=0.344 Sum_probs=69.7
Q ss_pred EEEEecCCCcHHHHHHHHHc-----CCCCc--cCCCCceeec--------ceEEecCCCCC---C----------cccc-
Q 016700 179 VGLVGLPNAGKSTLLAAITH-----AKPDI--ADYPFTTLMP--------NLGRLDGDPTL---G----------AEKY- 229 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~-----~~~~i--a~~~~tT~~p--------~~g~v~~~~~~---~----------~~~~- 229 (384)
+.|.|+.||||||||+.+.. .+..+ .++.-..++. ....+...... . ...+
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 67899999999999999983 12221 1111111110 11122111100 0 0112
Q ss_pred -CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 230 -SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 230 -~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
....+|+-+.|.-+.... . +....+...-.-+.++.|+|+..-...... ..+...+.. -=++|+||+|
T Consensus 83 ~~~d~IiIE~sG~a~p~~l-~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--------ADvIvlnK~D 152 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPL-I-LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--------ADVIVLNKID 152 (178)
T ss_dssp GC-SEEEEEEECSSGGGGH-H-HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---------SEEEEE-GG
T ss_pred CCcCEEEECCccccccchh-h-hccccccccccccceeEEeccccccccccchhhhhhcchh--------cCEEEEeccc
Confidence 346888999997654322 0 011122223446889999999652112222 223333332 2289999999
Q ss_pred CCChHHHHHHHHHHHHhc
Q 016700 308 LPEARDRLQSLTEEILKI 325 (384)
Q Consensus 308 l~~~~e~~~~l~~~~~~~ 325 (384)
+.+..+.++.+.+.++.+
T Consensus 153 ~~~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 153 LVSDEQKIERVREMIREL 170 (178)
T ss_dssp GHHHH--HHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHH
Confidence 987654456666666654
No 359
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.90 E-value=3.1e-05 Score=71.67 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=46.2
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeE---EEEeeCCC-CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLL---VHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~i---l~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
+...++|.||+.|-......+. ..++.+++-+.- +.++|.-- .++..-+..++-.|.... ..+.|.+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~-~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLN-KIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHH-HHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence 4689999999998543322233 344666666544 44555422 344444444444444322 1468999999999
Q ss_pred CCCC
Q 016700 307 DLPE 310 (384)
Q Consensus 307 Dl~~ 310 (384)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9865
No 360
>PRK00098 GTPase RsgA; Reviewed
Probab=97.86 E-value=6.5e-05 Score=73.10 Aligned_cols=84 Identities=19% Similarity=0.119 Sum_probs=60.0
Q ss_pred cccCCeEEEEeeCCCCCCHhH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--cccccccc
Q 016700 259 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE 335 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~--~~~sa~t~ 335 (384)
+..+|++++|+|++++++... +..++..+.. .++|+++|+||+|+....+..+.+.+.+...++ ..+|+.++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 578999999999987655433 2444444433 368999999999997444444555555655554 47789999
Q ss_pred cCHHHHHHHHHh
Q 016700 336 LSSEDAVKSLST 347 (384)
Q Consensus 336 ~gv~e~l~~l~~ 347 (384)
.+++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988754
No 361
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.85 E-value=0.00019 Score=73.34 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=48.2
Q ss_pred ceEEEeCCCCccccc-----cc-cchhHHHHHHcccCCeEEEEe-eCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 016700 232 EATLADLPGLIEGAH-----LG-KGLGRNFLRHLRRTRLLVHVI-DAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 304 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~-----~~-~gl~~~fl~~i~~ad~il~Vv-D~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~N 304 (384)
+++++|.||+|..-. +. ..+-.....|++...+||++| |.+- + .+-..+-..+...+| .++..|+|++
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV-D--AERSnVTDLVsq~DP--~GrRTIfVLT 487 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV-D--AERSIVTDLVSQMDP--HGRRTIFVLT 487 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc-c--hhhhhHHHHHHhcCC--CCCeeEEEEe
Confidence 589999999997422 21 234444566788888888877 3331 1 122233344455554 6788999999
Q ss_pred CCCCCCh
Q 016700 305 KIDLPEA 311 (384)
Q Consensus 305 K~Dl~~~ 311 (384)
|.|+.+.
T Consensus 488 KVDlAEk 494 (980)
T KOG0447|consen 488 KVDLAEK 494 (980)
T ss_pred ecchhhh
Confidence 9998653
No 362
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.85 E-value=0.00011 Score=75.76 Aligned_cols=157 Identities=22% Similarity=0.182 Sum_probs=90.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecce-EEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~-g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
|.+..+.++|..++|||.||+++.+....- .+..++-..+. -.+..... ..-+++-|++-. +.... .
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~------~k~LiL~ei~~~-~~~~l----~ 490 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQ------QKYLILREIGED-DQDFL----T 490 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccc------cceEEEeecCcc-ccccc----c
Confidence 456789999999999999999999865332 22222211111 11111110 123666676644 21111 0
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-HHHHHhcCCccc-
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILKIGCDKV- 330 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l-~~~~~~~~~~~~- 330 (384)
. +. ..||++++|+|.+++.+++-...+ ...|.. ....|+++|+.|+|+.+..+..... .+...++++..+
T Consensus 491 ~---ke-~~cDv~~~~YDsS~p~sf~~~a~v---~~~~~~-~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~ 562 (625)
T KOG1707|consen 491 S---KE-AACDVACLVYDSSNPRSFEYLAEV---YNKYFD-LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPI 562 (625)
T ss_pred C---cc-ceeeeEEEecccCCchHHHHHHHH---HHHhhh-ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCe
Confidence 0 11 569999999999987766554333 333322 2579999999999998654322221 334455665532
Q ss_pred --ccccccCHHHHHHHHHhccCc
Q 016700 331 --TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 --sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+..+ .+-.+++..|+..+..
T Consensus 563 ~~S~~~-~~s~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 563 HISSKT-LSSNELFIKLATMAQY 584 (625)
T ss_pred eeccCC-CCCchHHHHHHHhhhC
Confidence 3222 3337888888876644
No 363
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.85 E-value=0.00018 Score=73.08 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=39.4
Q ss_pred CceEEEeCCCCccccccccchhHHHHHH--cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~--i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
..++|+||||..... ..+....... ....+.+++|+|++..... .. ....+.. .-.+.-+|+||+|.
T Consensus 183 ~DvViIDTaGr~~~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~-~a~~F~~-----~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EA-QAKAFKD-----SVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcch---HHHHHHHHHHhhhcCCcEEEEEeccccChhH--HH-HHHHHHh-----ccCCcEEEEECccC
Confidence 379999999975421 1222222222 2346789999998754222 11 1122221 12467899999997
Q ss_pred CC
Q 016700 309 PE 310 (384)
Q Consensus 309 ~~ 310 (384)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
No 364
>PRK12289 GTPase RsgA; Reviewed
Probab=97.84 E-value=8.8e-05 Score=73.78 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred HcccCCeEEEEeeCCCCCC-HhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ccccccc
Q 016700 258 HLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSET 334 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~--~~~sa~t 334 (384)
++..+|.+++|+|+.++.. ...+..++..... .+.|+++|+||+||....+ .+.+.+.+..+++ ..+|+.+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-----~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAES-----TGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEEcCC
Confidence 4678999999999987542 2233334333322 3689999999999986433 4555666666654 4678999
Q ss_pred ccCHHHHHHHHHhcc
Q 016700 335 ELSSEDAVKSLSTEG 349 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~ 349 (384)
+.|++++++.|....
T Consensus 160 g~GI~eL~~~L~~ki 174 (352)
T PRK12289 160 GIGLEALLEQLRNKI 174 (352)
T ss_pred CCCHHHHhhhhccce
Confidence 999999999887543
No 365
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=6.4e-05 Score=69.87 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=72.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
-++|.|+|.--+||||+-+.+...-+ .-.-+.-.|..+....+... | -.+.+||.||+.+.....-.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s-------f-inf~v~dfPGQ~~~Fd~s~D---- 94 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS-------F-INFQVWDFPGQMDFFDPSFD---- 94 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh-------h-cceEEeecCCccccCCCccC----
Confidence 36799999999999999887765432 11112222322222222110 1 26899999999875433222
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCChH
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEAR 312 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~-~~~~~l~~~p~ivV~NK~Dl~~~~ 312 (384)
+..-.+.+.+++||+|+.+ +..+.+..|...+. .|. -..+..+=|.+.|.|-+..+
T Consensus 95 ~e~iF~~~gALifvIDaQd-dy~eala~L~~~v~rayk-vNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 95 YEMIFRGVGALIFVIDAQD-DYMEALARLHMTVERAYK-VNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred HHHHHhccCeEEEEEechH-HHHHHHHHHHHHhhheee-cCCCceEEEEEEeccCCchh
Confidence 2334577999999999875 22333333332222 222 12356678899999977543
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.82 E-value=0.00014 Score=71.32 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=52.8
Q ss_pred ceEEEeCCCCccccccc-cchhHHHHHHc-----ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 232 EATLADLPGLIEGAHLG-KGLGRNFLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~-~gl~~~fl~~i-----~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
.++|+||||.......- +.+. .+.+.+ ...+-.++|+|++.. .+.+......... -.+.-+|+||
T Consensus 198 D~ViIDTaGr~~~~~~l~~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~------~~~~giIlTK 268 (318)
T PRK10416 198 DVLIIDTAGRLHNKTNLMEELK-KIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA------VGLTGIILTK 268 (318)
T ss_pred CEEEEeCCCCCcCCHHHHHHHH-HHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh------CCCCEEEEEC
Confidence 69999999986432110 1111 222222 235678999999853 3333322222111 1456799999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcccccccccCHHHH
Q 016700 306 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDA 341 (384)
Q Consensus 306 ~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~ 341 (384)
+|.... .-.+...+...+++-....++++++++
T Consensus 269 lD~t~~---~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl 301 (318)
T PRK10416 269 LDGTAK---GGVVFAIADELGIPIKFIGVGEGIDDL 301 (318)
T ss_pred CCCCCC---ccHHHHHHHHHCCCEEEEeCCCChhhC
Confidence 996543 223333444455555555578877544
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.81 E-value=0.00011 Score=64.26 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=51.9
Q ss_pred CeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-C--CcccccccccCHH
Q 016700 263 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-G--CDKVTSETELSSE 339 (384)
Q Consensus 263 d~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~-~--~~~~sa~t~~gv~ 339 (384)
|++|+|+|+.++............+.. .++|+++|+||+|+....+ ...+...+... . +..+|+.++.+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999876544332111122222 3689999999999976433 33333333322 2 3467899999999
Q ss_pred HHHHHHHhc
Q 016700 340 DAVKSLSTE 348 (384)
Q Consensus 340 e~l~~l~~~ 348 (384)
++++.+.+.
T Consensus 75 ~L~~~i~~~ 83 (155)
T cd01849 75 KKESAFTKQ 83 (155)
T ss_pred hHHHHHHHH
Confidence 999988654
No 368
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.81 E-value=7.1e-05 Score=72.00 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=59.8
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Cccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKV 330 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--~~~~ 330 (384)
+.+.+.++.||++|+|+|+..+...... .+.+.+ .++|+++|+||+|+.+..+ .+.+.+.++..+ +..+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADPAV-TKQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCHHH-HHHHHHHHHHcCCeEEEE
Confidence 3456778999999999999865443331 122222 2589999999999975432 344444444433 3567
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
++.++.+++++++.+.+.+
T Consensus 84 Sa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 8889999999988877654
No 369
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.80 E-value=1.7e-05 Score=72.22 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=47.3
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHccc---CCeEEEEeeCCC-CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRR---TRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~---ad~il~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
.+.+.++|.||+|+-... ..+-..+.+|+.+ --+++|++|..= -+...-+.-.+..|...- ....|.|=|++|
T Consensus 97 eddylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi--~lE~P~INvlsK 173 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI--SLEVPHINVLSK 173 (273)
T ss_pred cCCEEEEeCCCeeEEeec-ChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH--HhcCcchhhhhH
Confidence 457999999999985332 2344566777765 235678887542 122222222222222211 147999999999
Q ss_pred CCCCCh
Q 016700 306 IDLPEA 311 (384)
Q Consensus 306 ~Dl~~~ 311 (384)
+||...
T Consensus 174 MDLlk~ 179 (273)
T KOG1534|consen 174 MDLLKD 179 (273)
T ss_pred HHHhhh
Confidence 999864
No 370
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.79 E-value=2.7e-05 Score=75.34 Aligned_cols=56 Identities=32% Similarity=0.277 Sum_probs=38.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-cc-------CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-IA-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-ia-------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
..++++|.+|||||||+|+|++.... .+ ....||.......+. ....++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCc
Confidence 46999999999999999999986432 11 122355544333321 1357999999965
No 371
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.77 E-value=7.1e-05 Score=72.42 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=64.7
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 316 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~ 316 (384)
-.||+... ..+.+.+.++.||++|+|+|+..+...+. ..+.+.+ .++|+++|+||+|+.+. +..+
T Consensus 6 wfpgHm~k------~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~-------~~kp~iiVlNK~DL~~~-~~~~ 70 (287)
T PRK09563 6 WFPGHMAK------ARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII-------GNKPRLLILNKSDLADP-EVTK 70 (287)
T ss_pred CcHHHHHH------HHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh-------CCCCEEEEEEchhcCCH-HHHH
Confidence 45777542 23345678899999999999976544332 1122222 25899999999999753 3334
Q ss_pred HHHHHHHhcC--CcccccccccCHHHHHHHHHhcc
Q 016700 317 SLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 317 ~l~~~~~~~~--~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.+.++..+ +..+++.++.+++++++.+.+.+
T Consensus 71 ~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 71 KWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred HHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 4545454433 35678889999999888776554
No 372
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.74 E-value=4e-05 Score=73.67 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=46.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC------CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 246 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~------~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~ 246 (384)
.-..|.++|.||+|||||+|++.... ..+..+|+.|.....- +.+.. ...+.++||||+.....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~-------rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISH-------RPPVYLIDTPGILVPSI 211 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEecc-------CCceEEecCCCcCCCCC
Confidence 45679999999999999999987542 2347889988755442 22211 23689999999987543
No 373
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.72 E-value=0.00075 Score=60.13 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=54.1
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
..++|+|||+... ......+..||.+++|+..+.. .......+.+.++.+ +.|+.+|+||+|...
T Consensus 93 ~d~viiDtpp~~~---------~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~ 157 (179)
T cd03110 93 AELIIIDGPPGIG---------CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLND 157 (179)
T ss_pred CCEEEEECcCCCc---------HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCc
Confidence 3799999996543 1234556789999999998743 455555666666543 467899999999754
Q ss_pred hHHHHHHHHHHHHhcCCc
Q 016700 311 ARDRLQSLTEEILKIGCD 328 (384)
Q Consensus 311 ~~e~~~~l~~~~~~~~~~ 328 (384)
. ..+++.+.++..++.
T Consensus 158 ~--~~~~~~~~~~~~~~~ 173 (179)
T cd03110 158 E--IAEEIEDYCEEEGIP 173 (179)
T ss_pred c--hHHHHHHHHHHcCCC
Confidence 2 234455556655543
No 374
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.71 E-value=0.00017 Score=71.58 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.++-..|.|+-|||||||||.+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4556789999999999999999854
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.71 E-value=0.0004 Score=66.76 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=53.1
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcc-----cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~-----~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
..++|+||||.......-..--..+.+.+. .+|.+++|+|++. ..+.+.......+.. .+.-+|+||
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~------~~~g~IlTK 226 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV------GLTGIILTK 226 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC------CCCEEEEEc
Confidence 378999999986421110000111222222 2788999999974 334443332222211 356889999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcccccccccCHHHH
Q 016700 306 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDA 341 (384)
Q Consensus 306 ~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~ 341 (384)
+|....--. ........+++-....++++++++
T Consensus 227 lDe~~~~G~---~l~~~~~~~~Pi~~~~~Gq~~~dl 259 (272)
T TIGR00064 227 LDGTAKGGI---ILSIAYELKLPIKFIGVGEKIDDL 259 (272)
T ss_pred cCCCCCccH---HHHHHHHHCcCEEEEeCCCChHhC
Confidence 998654332 223333344554444477776443
No 376
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.69 E-value=9.1e-05 Score=72.72 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=51.5
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC----------CHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.+||++|+ +..+..|..+++.+++++||+|.++.+ ...+...+.+.+.. .+.+.+.|+++
T Consensus 162 ~~~~~DvgGq-------~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pill 233 (317)
T cd00066 162 KFRMFDVGGQ-------RSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSIIL 233 (317)
T ss_pred EEEEECCCCC-------cccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEEE
Confidence 6899999998 345778889999999999999999742 22222223333322 23456799999
Q ss_pred EEeCCCCCC
Q 016700 302 VLNKIDLPE 310 (384)
Q Consensus 302 V~NK~Dl~~ 310 (384)
++||.|+..
T Consensus 234 ~~NK~D~f~ 242 (317)
T cd00066 234 FLNKKDLFE 242 (317)
T ss_pred EccChHHHH
Confidence 999999864
No 377
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.69 E-value=5.4e-05 Score=73.01 Aligned_cols=56 Identities=30% Similarity=0.277 Sum_probs=37.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC-CC---c----cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK-PD---I----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 244 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~-~~---i----a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~ 244 (384)
-.+|+|.+|||||||+|+|.... .+ | +.--.||.......+.. .=.|+||||+.+-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----------gG~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-----------GGWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-----------CCEEEeCCCCCcc
Confidence 47899999999999999998642 11 2 12235555544444321 3478999999763
No 378
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=7.5e-05 Score=77.20 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=78.3
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCC---CCccC---------------CCCceeecceEEecCCCCCCccccCCce
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAK---PDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEA 233 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~---~~ia~---------------~~~tT~~p~~g~v~~~~~~~~~~~~~~i 233 (384)
.++.+..|+++-.--+|||||-.++.-.. ..+.+ ..+.|+.-........ ..++
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--------~~~i 106 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--------DYRI 106 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--------ccee
Confidence 45677889999999999999999876322 11111 1122221111111111 2379
Q ss_pred EEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 234 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 234 ~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.|+||||+++... ...+.++--|..++|+|+......+.. ..+..+..| +.|.+..+||+|...+
T Consensus 107 NiIDTPGHvDFT~-------EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry-----~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 107 NIIDTPGHVDFTF-------EVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY-----NVPRICFINKMDRMGA 171 (721)
T ss_pred EEecCCCceeEEE-------EehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc-----CCCeEEEEehhhhcCC
Confidence 9999999987533 344556667889999998876555544 444566665 5999999999998764
No 379
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.65 E-value=0.00014 Score=72.22 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=52.0
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC----------CHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.+||+.|. +..+..|..+++.+++++||+|+++.+ ...+...+.+.+.. .+.+.+.|+++
T Consensus 185 ~~~~~DvgGq-------r~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~piil 256 (342)
T smart00275 185 FFRMFDVGGQ-------RSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSIIL 256 (342)
T ss_pred EEEEEecCCc-------hhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEEE
Confidence 5889999998 345678889999999999999999732 23333333333332 24556799999
Q ss_pred EEeCCCCCC
Q 016700 302 VLNKIDLPE 310 (384)
Q Consensus 302 V~NK~Dl~~ 310 (384)
++||.|+..
T Consensus 257 ~~NK~D~~~ 265 (342)
T smart00275 257 FLNKIDLFE 265 (342)
T ss_pred EEecHHhHH
Confidence 999999863
No 380
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.62 E-value=0.00023 Score=68.89 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=58.7
Q ss_pred cccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Ccccccccc
Q 016700 259 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSETE 335 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--~~~~sa~t~ 335 (384)
+..+|.+++|+|+.++. +...+..++..+.. .++|+++|+||+||....+. ..........+ +..+|+.++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDEEE-ELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChHHH-HHHHHHHHhCCCeEEEEECCCC
Confidence 67899999999998876 55555555555543 36899999999999764322 22223333344 447899999
Q ss_pred cCHHHHHHHHHh
Q 016700 336 LSSEDAVKSLST 347 (384)
Q Consensus 336 ~gv~e~l~~l~~ 347 (384)
.+++++...|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999888775
No 381
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.60 E-value=0.00014 Score=52.67 Aligned_cols=47 Identities=32% Similarity=0.594 Sum_probs=30.8
Q ss_pred HHHcccCCeEEEEeeCCC--CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 256 LRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
++|+ .++++|++|+|. ..+.++...++++++.. +.++|+++|+||+|
T Consensus 10 L~hL--~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~---F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHL--ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL---FPNKPVIVVLNKID 58 (58)
T ss_dssp GGGT---SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH---TTTS-EEEEE--TT
T ss_pred HHhh--cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH---cCCCCEEEEEeccC
Confidence 4555 478999999987 45667777788888753 23799999999998
No 382
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=3e-05 Score=76.82 Aligned_cols=127 Identities=22% Similarity=0.227 Sum_probs=80.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC------------------ccCCCCceeecceEEecCCCCCCccccCCceEEE
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD------------------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 236 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~------------------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~ 236 (384)
.+..|+++-.-.+||||...+|.--.-. +....+.|+. ...+..+.. +.++.++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiq--saav~fdwk------g~rinli 107 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQ--SAAVNFDWK------GHRINLI 107 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceee--eeeeecccc------cceEeee
Confidence 4557999999999999999887522110 1111222332 223333321 3489999
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HH
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR 314 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~ 314 (384)
||||+.+. .....+.++--|.++.|+|++.....+.+..|++.- ..+.|.+..+||+|...+. ..
T Consensus 108 dtpghvdf-------~leverclrvldgavav~dasagve~qtltvwrqad------k~~ip~~~finkmdk~~anfe~a 174 (753)
T KOG0464|consen 108 DTPGHVDF-------RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD------KFKIPAHCFINKMDKLAANFENA 174 (753)
T ss_pred cCCCcceE-------EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc------ccCCchhhhhhhhhhhhhhhhhH
Confidence 99999764 333445555668999999999876666666555332 2468999999999987542 23
Q ss_pred HHHHHHHH
Q 016700 315 LQSLTEEI 322 (384)
Q Consensus 315 ~~~l~~~~ 322 (384)
.+.+.+.+
T Consensus 175 vdsi~ekl 182 (753)
T KOG0464|consen 175 VDSIEEKL 182 (753)
T ss_pred HHHHHHHh
Confidence 44444443
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.59 E-value=0.00032 Score=64.12 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=52.6
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+||||..........--..+++.+ ..+-+++|+|++.. .+++..+....... .+-=++++|.|....
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETAR 155 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSST
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCCC
Confidence 6999999998653221111112334444 46778999998853 23333333332221 233577999998654
Q ss_pred HHHHHHHHHHHHhcCCcccccccccCH
Q 016700 312 RDRLQSLTEEILKIGCDKVTSETELSS 338 (384)
Q Consensus 312 ~e~~~~l~~~~~~~~~~~~sa~t~~gv 338 (384)
- -.+...+...+.+-....+++.+
T Consensus 156 ~---G~~l~~~~~~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 156 L---GALLSLAYESGLPISYITTGQRV 179 (196)
T ss_dssp T---HHHHHHHHHHTSEEEEEESSSST
T ss_pred c---ccceeHHHHhCCCeEEEECCCCh
Confidence 2 34445555556665555566665
No 384
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.56 E-value=0.00061 Score=66.99 Aligned_cols=84 Identities=27% Similarity=0.329 Sum_probs=51.9
Q ss_pred ceEEEeCCCCccccccccchhHHHHH-----HcccCCeEEEEeeCCCCCCHhH--HHHHHHHHHhcCCCCCCCCEEEEEe
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNPDYLERPFIVVLN 304 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~-----~i~~ad~il~VvD~s~~~~~~~--~~~l~~eL~~~~~~l~~~p~ivV~N 304 (384)
..+++-|-|+-+... +...|.. ..-+-|.++-|||+..-..... .....+.+.. -=+||+|
T Consensus 86 D~ivIEtTGlA~P~p----v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivlN 153 (323)
T COG0523 86 DRLVIETTGLADPAP----VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVLN 153 (323)
T ss_pred CEEEEeCCCCCCCHH----HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEEe
Confidence 578889999865421 2222322 2234578999999986322211 1233333332 2289999
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCc
Q 016700 305 KIDLPEARDRLQSLTEEILKIGCD 328 (384)
Q Consensus 305 K~Dl~~~~e~~~~l~~~~~~~~~~ 328 (384)
|+|+.++.+ ++.+.+.++.+.-.
T Consensus 154 K~Dlv~~~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 154 KTDLVDAEE-LEALEARLRKLNPR 176 (323)
T ss_pred cccCCCHHH-HHHHHHHHHHhCCC
Confidence 999998765 78888888877544
No 385
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00037 Score=68.52 Aligned_cols=144 Identities=24% Similarity=0.281 Sum_probs=78.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC---------ccCC-----CCceeecc---------eEEecCCCCCCcc----cc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD---------IADY-----PFTTLMPN---------LGRLDGDPTLGAE----KY 229 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~---------ia~~-----~~tT~~p~---------~g~v~~~~~~~~~----~~ 229 (384)
.+|+++|-..+|||||+-.|+..+.. +-.. .+.|.... -..+.|....... .-
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 36999999999999999998854211 0000 01111100 0112221110000 00
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
+.-++++|.+|+..+.+.. -+..-.| .-|..++|+.+...-.+..-+.+ -.+.. .+.|++++++|+|+.
T Consensus 248 SKlvTfiDLAGh~kY~~TT---i~gLtgY--~Ph~A~LvVsA~~Gi~~tTrEHL-gl~~A-----L~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTT---IHGLTGY--TPHFACLVVSADRGITWTTREHL-GLIAA-----LNIPFFVLVTKMDLV 316 (591)
T ss_pred cceEEEeecccchhhheee---eeecccC--CCceEEEEEEcCCCCccccHHHH-HHHHH-----hCCCeEEEEEeeccc
Confidence 1237899999985532110 0000111 24777888888775554433222 22222 369999999999998
Q ss_pred Ch---HHHHHHHHHHHHhcCCcccc
Q 016700 310 EA---RDRLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 310 ~~---~e~~~~l~~~~~~~~~~~~s 331 (384)
+. +...+++.+.+...++...+
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp 341 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVP 341 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccc
Confidence 76 34566666777777776443
No 386
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.53 E-value=0.00026 Score=69.58 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=70.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC----CCc-cCCCC-ceeec------ceEEecCCC-----CCC------------
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK----PDI-ADYPF-TTLMP------NLGRLDGDP-----TLG------------ 225 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~----~~i-a~~~~-tT~~p------~~g~v~~~~-----~~~------------ 225 (384)
.++-..|.|+-|||||||||.+.... ..+ .+..+ ..++. ....+.... ...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45667899999999999999998542 121 11111 11111 011111100 000
Q ss_pred ---ccccCCceEEEeCCCCccccccccchhHHHH-----HHcccCCeEEEEeeCCCCCC-HhHHHHHHHHHHhcCCCCCC
Q 016700 226 ---AEKYSSEATLADLPGLIEGAHLGKGLGRNFL-----RHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLE 296 (384)
Q Consensus 226 ---~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl-----~~i~~ad~il~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~ 296 (384)
...+....+++.|.|+-+... +...|+ ...-+.+.++.|+|+..... ..........+..
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~----i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------- 151 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGP----IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------- 151 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHH----HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------
Confidence 000123578899999865321 222221 11223588999999975211 1112222233332
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 016700 297 RPFIVVLNKIDLPEARDRLQSLTEEILKI 325 (384)
Q Consensus 297 ~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~ 325 (384)
-=+||+||+|+.... +.+.+.++.+
T Consensus 152 -AD~IvlnK~Dl~~~~---~~~~~~l~~l 176 (318)
T PRK11537 152 -ADRILLTKTDVAGEA---EKLRERLARI 176 (318)
T ss_pred -CCEEEEeccccCCHH---HHHHHHHHHh
Confidence 228999999998753 3455555444
No 387
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.53 E-value=0.00034 Score=57.58 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=54.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|..++|||+|+.++....... .+ |+ +..+ +...| .
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~--~~-~t~~----------------~~~~~------------------~ 41 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VP--TV-FTIG----------------IDVYD------------------P 41 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cC--ce-ehhh----------------hhhcc------------------c
Confidence 379999999999999999996543210 01 00 1111 01111 1
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.+.+.++.++.|+|.+...+.+.. |...+..... .+.|.+++.||.|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k--~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK--SDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC--CCCcEEEEeechhhH
Confidence 224567888888888876555433 4444443332 357889999999984
No 388
>PRK14974 cell division protein FtsY; Provisional
Probab=97.53 E-value=0.00057 Score=67.55 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=51.9
Q ss_pred ceEEEeCCCCccccccccchhHHHHHH---cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~---i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
.++|+||||..... ..+... ++. .-..|.+++|+|++... +..... ..|.. .-..--+++||+|.
T Consensus 224 DvVLIDTaGr~~~~---~~lm~e-L~~i~~~~~pd~~iLVl~a~~g~--d~~~~a----~~f~~--~~~~~giIlTKlD~ 291 (336)
T PRK14974 224 DVVLIDTAGRMHTD---ANLMDE-LKKIVRVTKPDLVIFVGDALAGN--DAVEQA----REFNE--AVGIDGVILTKVDA 291 (336)
T ss_pred CEEEEECCCccCCc---HHHHHH-HHHHHHhhCCceEEEeeccccch--hHHHHH----HHHHh--cCCCCEEEEeeecC
Confidence 59999999986421 112111 122 22468889999997532 222222 22211 11345789999998
Q ss_pred CChHHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 309 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 309 ~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
...-- .+.......+.+-....++++++++.
T Consensus 292 ~~~~G---~~ls~~~~~~~Pi~~i~~Gq~v~Dl~ 322 (336)
T PRK14974 292 DAKGG---AALSIAYVIGKPILFLGVGQGYDDLI 322 (336)
T ss_pred CCCcc---HHHHHHHHHCcCEEEEeCCCChhhcc
Confidence 65322 22233333455544445888875543
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00048 Score=69.14 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=53.5
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHc--ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i--~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||...... .......+.+ ...+.+++|+|++.. .++ +.+.+..|.. -..-=++++|.|..
T Consensus 322 DvVLIDTaGRs~kd~---~lm~EL~~~lk~~~PdevlLVLsATtk--~~d---~~~i~~~F~~---~~idglI~TKLDET 390 (436)
T PRK11889 322 DYILIDTAGKNYRAS---ETVEEMIETMGQVEPDYICLTLSASMK--SKD---MIEIITNFKD---IHIDGIVFTKFDET 390 (436)
T ss_pred CEEEEeCccccCcCH---HHHHHHHHHHhhcCCCeEEEEECCccC--hHH---HHHHHHHhcC---CCCCEEEEEcccCC
Confidence 789999999854321 1122222222 224677889998632 223 2334444442 13356889999976
Q ss_pred ChHHHHHHHHHHHHhcCCcccccccccCHHHHHH
Q 016700 310 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 343 (384)
Q Consensus 310 ~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~ 343 (384)
.. .-.+.......+++-....++..+-+-+.
T Consensus 391 ~k---~G~iLni~~~~~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 391 AS---SGELLKIPAVSSAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CC---ccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence 53 23344444555555444446666555443
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00027 Score=70.65 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=75.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-c--CCCCceeecc------------------eEEecCCCCCC--ccc-cCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-A--DYPFTTLMPN------------------LGRLDGDPTLG--AEK-YSS 231 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-a--~~~~tT~~p~------------------~g~v~~~~~~~--~~~-~~~ 231 (384)
.--|+|+|++||||||++..|...-... . ...+.|.+.. ...+....... ... -..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3468999999999999999997531100 0 0011111111 00010000000 000 123
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHc---ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcC--CCCC-CCCEEEEEeC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYL-ERPFIVVLNK 305 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i---~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~-~~p~ivV~NK 305 (384)
.++|+||||..... ..+.. .+..+ ..+.-.++|++++.. .+++....+...... +... ..+-=+|++|
T Consensus 217 DlVLIDTaG~~~~d---~~l~e-~La~L~~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 217 HMVLIDTIGMSQRD---RTVSD-QIAMLHGADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CEEEEcCCCCCccc---HHHHH-HHHHHhccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 78999999986421 11222 22333 334456889998753 222222222222111 0000 0134688899
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 306 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 306 ~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
.|.... .-.+.......+++...+.++..+-+-+
T Consensus 291 lDEt~~---~G~~l~~~~~~~lPi~yvt~Gq~VPedl 324 (374)
T PRK14722 291 LDEASN---LGGVLDTVIRYKLPVHYVSTGQKVPENL 324 (374)
T ss_pred cccCCC---ccHHHHHHHHHCcCeEEEecCCCCCccc
Confidence 997653 3344444455555544444565555443
No 391
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.00086 Score=63.67 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=73.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc----cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc-
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG- 250 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i----a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g- 250 (384)
...|..||-+|-|||||+..|.+.+..- ..+|..-+.++...+.... ..-+++|+||.|+.+.-.....
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsn------vrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESN------VRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcC------eeEEEEEEeecccccccCccccc
Confidence 3679999999999999999999875332 2233333333332222111 1237899999999653221111
Q ss_pred ------hhHHHHH---------------HcccCCeEEEEeeCCCCCCHhHHHHH-HHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 251 ------LGRNFLR---------------HLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 251 ------l~~~fl~---------------~i~~ad~il~VvD~s~~~~~~~~~~l-~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
+...|.. |=.|.+++||.|..+.. ....+..+ ...|. ....+|-|+-|+|.
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld------skVNIIPvIAKaDt 188 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD------SKVNIIPVIAKADT 188 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh------hhhhhHHHHHHhhh
Confidence 1112222 22467899999988763 23333222 12232 24667888999998
Q ss_pred CChHH
Q 016700 309 PEARD 313 (384)
Q Consensus 309 ~~~~e 313 (384)
....+
T Consensus 189 isK~e 193 (406)
T KOG3859|consen 189 ISKEE 193 (406)
T ss_pred hhHHH
Confidence 86544
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.46 E-value=0.00032 Score=70.08 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=58.1
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHH-HHHHHHhcC
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQS-LTEEILKIG 326 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~-l~~~~~~~~ 326 (384)
+..........++++++|+|+.+... .|..++..+. ..+|+++|+||+|+.... +.+.. +.+.++..+
T Consensus 53 f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 53 FLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 44433344578899999999976432 1233444332 258999999999987532 22222 223345554
Q ss_pred C-----cccccccccCHHHHHHHHHh
Q 016700 327 C-----DKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 327 ~-----~~~sa~t~~gv~e~l~~l~~ 347 (384)
+ ..+|+.++.+++++++.|.+
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 3 46799999999999999865
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0012 Score=68.65 Aligned_cols=97 Identities=23% Similarity=0.227 Sum_probs=54.1
Q ss_pred CceEEEeCCCCccccccccchhH--HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGR--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~--~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
..++|+||||....... +.. .++.... ....++|++++. ...++..+. +.|.. ..+.-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D~~---l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii---~~f~~---~~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRA---LAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVV---RRFAH---AKPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhhHH---HHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHH---HHHHh---hCCeEEEEecCcC
Confidence 37999999998543211 111 1222222 234577788764 233433333 33332 2567899999997
Q ss_pred CChHHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 309 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 309 ~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
... +-.+...+...++....+.++..+-+-+
T Consensus 497 t~~---lG~aLsv~~~~~LPI~yvt~GQ~VPeDL 527 (559)
T PRK12727 497 TGR---FGSALSVVVDHQMPITWVTDGQRVPDDL 527 (559)
T ss_pred ccc---hhHHHHHHHHhCCCEEEEeCCCCchhhh
Confidence 543 3455555666666655555777774443
No 394
>PRK12288 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.0011 Score=66.04 Aligned_cols=86 Identities=22% Similarity=0.134 Sum_probs=60.8
Q ss_pred cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHhcC--Cccccccc
Q 016700 259 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIG--CDKVTSET 334 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e--~~~~l~~~~~~~~--~~~~sa~t 334 (384)
...+|.+++|++......+..+..++..... .+.|.++|+||+||....+ ....+.+.+...+ +..+|+.+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET-----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3568999999998766666666666544432 3689999999999976432 3344445555555 44678999
Q ss_pred ccCHHHHHHHHHhcc
Q 016700 335 ELSSEDAVKSLSTEG 349 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~ 349 (384)
+.|++++++.|....
T Consensus 193 g~GideL~~~L~~ki 207 (347)
T PRK12288 193 GEGLEELEAALTGRI 207 (347)
T ss_pred CcCHHHHHHHHhhCC
Confidence 999999999987643
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.42 E-value=0.0016 Score=57.70 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=38.5
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+||||...........-..+. .....+.+++|+|+... .+..+......+. .+ ..-+|+||+|....
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l~-~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~-----~~-~~~viltk~D~~~~ 154 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIK-RVVKPDEVLLVVDAMTG--QDAVNQAKAFNEA-----LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHHH-hhcCCCeEEEEEECCCC--hHHHHHHHHHHhh-----CC-CCEEEEECCcCCCC
Confidence 6899999998531100000011122 22348999999998632 3333333222222 12 35788899998654
No 396
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.41 E-value=0.0026 Score=54.64 Aligned_cols=106 Identities=21% Similarity=0.214 Sum_probs=59.7
Q ss_pred EEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcc
Q 016700 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 260 (384)
Q Consensus 181 lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~ 260 (384)
.-+.+|+||||+-..+...-.. ....++ .++.+..... +...++|+|+|+... ......+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~---~~~~~~-----~vd~D~~~~~--~~yd~VIiD~p~~~~---------~~~~~~l~ 65 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK---LGKRVL-----LLDADLGLAN--LDYDYIIIDTGAGIS---------DNVLDFFL 65 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH---CCCcEE-----EEECCCCCCC--CCCCEEEEECCCCCC---------HHHHHHHH
Confidence 3467999999997776543110 001111 1222211111 113789999998643 23345577
Q ss_pred cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 261 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 261 ~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.||.+++|++.+... ..+...+.+++.... ...++.+|+|+++..
T Consensus 66 ~aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~ 110 (139)
T cd02038 66 AADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP 110 (139)
T ss_pred hCCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence 899999999987432 333333344444321 246788999999754
No 397
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0012 Score=67.37 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=54.0
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+||||...........-..++.......-.++|++++.. ..++..+ +..|.. . .+--++++|+|....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~---~~~f~~--~-~~~~vI~TKlDet~~ 372 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDI---YKHFSR--L-PLDGLIFTKLDETSS 372 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHH---HHHhCC--C-CCCEEEEeccccccc
Confidence 6899999998542111111111222211123456778887642 2333333 334432 1 233688999997543
Q ss_pred HHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 312 RDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 312 ~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
.-.+.+.+...+++.....++..+-+-+
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~Gq~VpdDl 400 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTNGQRVPDDI 400 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeCCCCChhhh
Confidence 3345666666677666666777764444
No 398
>PRK13796 GTPase YqeH; Provisional
Probab=97.34 E-value=0.00057 Score=68.42 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=57.3
Q ss_pred HHHHcccCC-eEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHH-HHHHHhcCC--
Q 016700 255 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL-TEEILKIGC-- 327 (384)
Q Consensus 255 fl~~i~~ad-~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l-~~~~~~~~~-- 327 (384)
.++.+..++ ++++|+|+.+.. ..+..++..+. .++|+++|+||+|+.... +..+.+ ....+..++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 567777666 999999998732 12334454433 268999999999997532 223322 223344443
Q ss_pred ---cccccccccCHHHHHHHHHhc
Q 016700 328 ---DKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 328 ---~~~sa~t~~gv~e~l~~l~~~ 348 (384)
..+|+.++.+++++++.|.+.
T Consensus 134 ~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 134 VDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998654
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.34 E-value=0.00065 Score=63.17 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=28.9
Q ss_pred cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 259 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
++.+|++|+|+|.|.. +....+.+.+.-. ++--+++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~-sl~taeri~~L~~----elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTAERIKELAE----ELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHHHHHHHHHH----HhCCceEEEEEeeccch
Confidence 4679999999999853 2222222222222 12128999999999854
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00042 Score=77.80 Aligned_cols=133 Identities=24% Similarity=0.246 Sum_probs=70.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc--cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc----cccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGKG 250 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i--a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~----~~~g 250 (384)
+=-.+||+||+||||++.----.-|-. ....... .+ ++-..+.. |.+.-+++||.|-.-..+ .++.
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~-~~--gT~~cdww-----f~deaVlIDtaGry~~q~s~~~~~~~ 197 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLA-GP--GTRNCDWW-----FTDEAVLIDTAGRYITQDSADEVDRA 197 (1188)
T ss_pred CceEEecCCCCCcchHHhcccccCcchhhhcccccc-CC--CCcccCcc-----cccceEEEcCCcceecccCcchhhHH
Confidence 346789999999999987543322211 1111111 11 12222222 456789999999643321 1222
Q ss_pred hhHHHHHH------cccCCeEEEEeeCCC---CCCHhH---HHHHH---HHHHhcCCCCCCCCEEEEEeCCCCCCh-HHH
Q 016700 251 LGRNFLRH------LRRTRLLVHVIDAAA---ENPVND---YRTVK---EELRMYNPDYLERPFIVVLNKIDLPEA-RDR 314 (384)
Q Consensus 251 l~~~fl~~------i~~ad~il~VvD~s~---~~~~~~---~~~l~---~eL~~~~~~l~~~p~ivV~NK~Dl~~~-~e~ 314 (384)
....|+.. .+.-+.||+-+|+++ .+..+. ...++ .||..... ...|+.+++||+|+... ++.
T Consensus 198 ~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~GF~ef 275 (1188)
T COG3523 198 EWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLPGFEEF 275 (1188)
T ss_pred HHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccccHHHH
Confidence 22223222 234688999999876 222222 22233 34443322 46999999999998753 343
Q ss_pred HHHHH
Q 016700 315 LQSLT 319 (384)
Q Consensus 315 ~~~l~ 319 (384)
...+.
T Consensus 276 F~~l~ 280 (1188)
T COG3523 276 FGSLN 280 (1188)
T ss_pred HhccC
Confidence 33333
No 401
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.33 E-value=0.002 Score=63.77 Aligned_cols=124 Identities=23% Similarity=0.197 Sum_probs=70.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccC---------C-----CCceeecceEEecCCCCCC---------c-----
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------Y-----PFTTLMPNLGRLDGDPTLG---------A----- 226 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~---------~-----~~tT~~p~~g~v~~~~~~~---------~----- 226 (384)
.-.-|+..|.-++|||||+-+|+..++--.+ + .+-|.+..+..+-+++... .
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 3346999999999999999998754432111 0 1112222233332211000 0
Q ss_pred -cccCCceEEEeCCCCccccccccchhHHHHHHc--ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEE
Q 016700 227 -EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 303 (384)
Q Consensus 227 -~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i--~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~ 303 (384)
..-..-+.++||-|+.. .-+..++-+ +..|..++|+-+.+..+.-.-+.+--.+. .+.|+++|+
T Consensus 196 v~~aDklVsfVDtvGHEp-------wLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVvv 262 (527)
T COG5258 196 VKRADKLVSFVDTVGHEP-------WLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVVV 262 (527)
T ss_pred hhhcccEEEEEecCCccH-------HHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEEE
Confidence 00011377999999832 223333333 55799999998887544333222221222 469999999
Q ss_pred eCCCCCCh
Q 016700 304 NKIDLPEA 311 (384)
Q Consensus 304 NK~Dl~~~ 311 (384)
+|+|+.+.
T Consensus 263 TK~D~~~d 270 (527)
T COG5258 263 TKIDMVPD 270 (527)
T ss_pred EecccCcH
Confidence 99999864
No 402
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0013 Score=65.81 Aligned_cols=95 Identities=12% Similarity=-0.011 Sum_probs=50.6
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHc--ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i--~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||..... ..........+ -..+.+++|+++.. ...+ +.+.+..|.. -.+--+|++|.|..
T Consensus 287 D~VLIDTAGr~~~d---~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d---~~~i~~~f~~---l~i~glI~TKLDET 355 (407)
T PRK12726 287 DHILIDTVGRNYLA---EESVSEISAYTDVVHPDLTCFTFSSGM--KSAD---VMTILPKLAE---IPIDGFIITKMDET 355 (407)
T ss_pred CEEEEECCCCCccC---HHHHHHHHHHhhccCCceEEEECCCcc--cHHH---HHHHHHhcCc---CCCCEEEEEcccCC
Confidence 78999999985421 11111111111 23467777887642 2223 2233444432 13457889999976
Q ss_pred ChHHHHHHHHHHHHhcCCcccccccccCHHH
Q 016700 310 EARDRLQSLTEEILKIGCDKVTSETELSSED 340 (384)
Q Consensus 310 ~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e 340 (384)
.. .-.+.......+.+.....+++.+.+
T Consensus 356 ~~---~G~~Lsv~~~tglPIsylt~GQ~Vpd 383 (407)
T PRK12726 356 TR---IGDLYTVMQETNLPVLYMTDGQNITE 383 (407)
T ss_pred CC---ccHHHHHHHHHCCCEEEEecCCCCCc
Confidence 43 33444445555555444446666555
No 403
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0015 Score=63.67 Aligned_cols=134 Identities=22% Similarity=0.305 Sum_probs=81.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC-----------Cc-----cCCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP-----------DI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~-----------~i-----a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|--.+|+-||.-.-|||||..+|+..-. .| ....+.|+ +...+.|... ...+-=.|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~D 123 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTD 123 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCC
Confidence 3445799999999999999999985211 11 11123344 3344444432 13566799
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCCChHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEARDRLQ 316 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-~p~ivV~NK~Dl~~~~e~~~ 316 (384)
.||+-++ -.....-...-|..|+||.+++....+.-+.++-. ++ .. ..+++.+||.|+.+..|.++
T Consensus 124 CPGHADY-------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQ-----VGV~~ivvfiNKvD~V~d~e~le 190 (449)
T KOG0460|consen 124 CPGHADY-------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQ-----VGVKHIVVFINKVDLVDDPEMLE 190 (449)
T ss_pred CCchHHH-------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HH-----cCCceEEEEEecccccCCHHHHH
Confidence 9999542 22222223445899999999996655554433211 11 22 45888999999996555433
Q ss_pred ----HHHHHHHhcCCc
Q 016700 317 ----SLTEEILKIGCD 328 (384)
Q Consensus 317 ----~l~~~~~~~~~~ 328 (384)
++++.+..+++.
T Consensus 191 LVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 191 LVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 345666777665
No 404
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.31 E-value=0.0043 Score=60.26 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
....|.++|..++||||||..|.+.+
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc
Confidence 45579999999999999999999875
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0014 Score=70.80 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=51.2
Q ss_pred ceEEEeCCCCccccccccchhHHH--HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~f--l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||..... ..+.... +......+-.++|+|++.. .++ +.+.++.|.....-.+-=+|++|.|..
T Consensus 265 D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~---l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH--GDT---LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc--HHH---HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 68999999965421 1122221 1112334567899998742 233 333344443211112446889999976
Q ss_pred ChHHHHHHHHHHHHhcCCcccccccccCH
Q 016700 310 EARDRLQSLTEEILKIGCDKVTSETELSS 338 (384)
Q Consensus 310 ~~~e~~~~l~~~~~~~~~~~~sa~t~~gv 338 (384)
.. .-.+.......+++...+.+++.+
T Consensus 337 ~~---~G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 337 TH---LGPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred CC---ccHHHHHHHHHCCCeEEEecCCCC
Confidence 53 233444444555554444466666
No 406
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00037 Score=66.84 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=67.3
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.+.++|.||++- +...++.-..--|+.++++-+....+.-+....+..++.+ .-+.++++-||+||..+
T Consensus 126 HVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM----~LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 126 HVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM----KLKHIIILQNKIDLIKE 194 (466)
T ss_pred EEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh----hhceEEEEechhhhhhH
Confidence 478999999842 2222222222336777777766543322222222223222 13779999999999865
Q ss_pred HH---HHHHHHHHHHhc-----CCcccccccccCHHHHHHHHHhccCcccc
Q 016700 312 RD---RLQSLTEEILKI-----GCDKVTSETELSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 312 ~e---~~~~l~~~~~~~-----~~~~~sa~t~~gv~e~l~~l~~~~~~~~~ 354 (384)
.+ ..+.+.++++.. .+.++++.-.-+++-+.+.++.++....+
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 43 344444444432 34477888888999999999988865543
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0022 Score=65.23 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=54.1
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcc---cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~---~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
.++++||+|...... .+.. -+..+. ...-.++|+|++.. .++ +.+.+..|.. -..-=++++|.|.
T Consensus 271 d~VLIDTaGrsqrd~---~~~~-~l~~l~~~~~~~~~~LVl~at~~--~~~---~~~~~~~f~~---~~~~~~I~TKlDE 338 (420)
T PRK14721 271 HMVLIDTVGMSQRDQ---MLAE-QIAMLSQCGTQVKHLLLLNATSS--GDT---LDEVISAYQG---HGIHGCIITKVDE 338 (420)
T ss_pred CEEEecCCCCCcchH---HHHH-HHHHHhccCCCceEEEEEcCCCC--HHH---HHHHHHHhcC---CCCCEEEEEeeeC
Confidence 589999999864311 1111 223332 23456788998742 233 3333444442 2345688999997
Q ss_pred CChHHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 309 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 309 ~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
... .-.+...+...+++.....++..+-+-+
T Consensus 339 t~~---~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl 369 (420)
T PRK14721 339 AAS---LGIALDAVIRRKLVLHYVTNGQKVPEDL 369 (420)
T ss_pred CCC---ccHHHHHHHHhCCCEEEEECCCCchhhh
Confidence 653 3345555555666655555777764433
No 408
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.26 E-value=0.0035 Score=51.36 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=60.3
Q ss_pred EEEEe-cCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 179 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 179 V~lvG-~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
|++++ ..++||||+...|..+-.... ......++.++. .+..++|+|||+... .....
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~-------~~~~~l~d~d~~-----~~~D~IIiDtpp~~~---------~~~~~ 60 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA-------GRRVLLVDLDLQ-----FGDDYVVVDLGRSLD---------EVSLA 60 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC-------CCcEEEEECCCC-----CCCCEEEEeCCCCcC---------HHHHH
Confidence 34444 689999998887765421110 111222333332 223689999998743 23345
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
.+..||.+++|++.+.. .......+.+.++..... ....+.+|+|+
T Consensus 61 ~l~~aD~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 61 ALDQADRVFLVTQQDLP-SIRNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred HHHHcCeEEEEecCChH-HHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 67889999999987643 334445555555543321 13457788885
No 409
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0018 Score=65.70 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=54.1
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcc--cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~--~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||..........--..+++.+. ...-.++|+|++.. .++ +.+.+..|.. -.+-=+|++|.|-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~---~~~~~~~f~~---~~~~glIlTKLDEt 372 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH---TLTVLKAYES---LNYRRILLTKLDEA 372 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH---HHHHHHHhcC---CCCCEEEEEcccCC
Confidence 68999999986432211111122233331 13357889998753 222 2333444432 13457889999976
Q ss_pred ChHHHHHHHHHHHHhcCCcccccccccCHHHHHHH
Q 016700 310 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 344 (384)
Q Consensus 310 ~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~ 344 (384)
.. .-.+.......+.+-....++..+-+-+..
T Consensus 373 ~~---~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 373 DF---LGSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred CC---ccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 43 233444455555554444466655554443
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.17 E-value=0.0025 Score=65.23 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=39.1
Q ss_pred ceEEEeCCCCccccccccchhHH--HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~--fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||..... ..+-.. .+..+..+|.+++|+|++.. .+.+ +....|...+ ...-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~d---~~lm~El~~l~~~~~pdevlLVvda~~g--q~av----~~a~~F~~~l--~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE---EDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAK----NQAKAFHEAV--GIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch---HHHHHHHHHHHHHhcccceeEEEecccc--HHHH----HHHHHHHhcC--CCCEEEEecccCC
Confidence 68999999975321 111111 12334467899999998764 2222 2233333211 2346889999975
Q ss_pred C
Q 016700 310 E 310 (384)
Q Consensus 310 ~ 310 (384)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
No 411
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0023 Score=61.38 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=55.1
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHc--ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i--~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||..... ......+...+ ...+-+++|+|++.. .++ +.+.++.|.. -.+-=++++|.|..
T Consensus 156 D~ViIDt~Gr~~~~---~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d---~~~~~~~f~~---~~~~~~I~TKlDet 224 (270)
T PRK06731 156 DYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--SKD---MIEIITNFKD---IHIDGIVFTKFDET 224 (270)
T ss_pred CEEEEECCCCCcCC---HHHHHHHHHHHhhhCCCeEEEEEcCccC--HHH---HHHHHHHhCC---CCCCEEEEEeecCC
Confidence 78999999986421 11222222222 234568999998742 222 2334445543 24457889999976
Q ss_pred ChHHHHHHHHHHHHhcCCcccccccccCHHHHHHH
Q 016700 310 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 344 (384)
Q Consensus 310 ~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l~~ 344 (384)
.. .-.+.......+.+-....+++.+-+-+..
T Consensus 225 ~~---~G~~l~~~~~~~~Pi~~it~Gq~vp~di~~ 256 (270)
T PRK06731 225 AS---SGELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred CC---ccHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 53 233444444555555544566666655543
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0021 Score=66.43 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=50.9
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++++||+|....... ......++.......-.++|+|++.. . ..+.+.+..|.. ....-+|+||+|-...
T Consensus 336 d~VLIDTaGr~~~d~~-~~e~~~~l~~~~~p~e~~LVLdAt~~--~---~~l~~i~~~f~~---~~~~g~IlTKlDet~~ 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDRM-VSEQIAMLHGAGAPVKRLLLLNATSH--G---DTLNEVVQAYRG---PGLAGCILTKLDEAAS 406 (484)
T ss_pred CeEEeCCCCcChhhHH-HHHHHHHHhccCCCCeeEEEEeCCCc--H---HHHHHHHHHhcc---CCCCEEEEeCCCCccc
Confidence 5899999996532110 00011122222111226788898742 2 234444555543 2345678999997643
Q ss_pred HHHHHHHHHHHHhcCCcccccccccCH
Q 016700 312 RDRLQSLTEEILKIGCDKVTSETELSS 338 (384)
Q Consensus 312 ~e~~~~l~~~~~~~~~~~~sa~t~~gv 338 (384)
.-.+.......++....+.+++.+
T Consensus 407 ---~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 407 ---LGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred ---chHHHHHHHHHCCCeEEEecCCCC
Confidence 344555555556665555577777
No 413
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.006 Score=61.49 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=54.5
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+||||........-.--..++..+..-.-.++|+|++.. ..++. +.+..|.. -.+-=++++|.|-...
T Consensus 256 DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~---~~~~~~~~---~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 256 DLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK---EIFHQFSP---FSYKTVIFTKLDETTC 327 (388)
T ss_pred CEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeccCCCc
Confidence 6999999998643111000011223333222257899999864 33333 44455432 1345788999997654
Q ss_pred HHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 312 RDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 312 ~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
.-.+.......+.+.....+++.+-+-+
T Consensus 328 ---~G~~l~~~~~~~~Pi~yit~Gq~vPeDl 355 (388)
T PRK12723 328 ---VGNLISLIYEMRKEVSYVTDGQIVPHNI 355 (388)
T ss_pred ---chHHHHHHHHHCCCEEEEeCCCCChhhh
Confidence 3344445555555555555777774433
No 414
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0017 Score=66.10 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=80.2
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCcc-----CCCCce--eecceEEecC---------C----------CCCCcc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-----DYPFTT--LMPNLGRLDG---------D----------PTLGAE 227 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia-----~~~~tT--~~p~~g~v~~---------~----------~~~~~~ 227 (384)
+.+..+.+|-.-.-|||||..+|....-.|+ ...||. .+.+..-+.+ . ...+..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 4566778888899999999999975432221 112221 1111111110 0 000001
Q ss_pred ccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 228 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 228 ~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
+.-+.++|.||+.+.. ...-..++-+|..|+|+|.-+....+.-..|.+.+.+ .-+| ++|+||+|
T Consensus 97 --~FLiNLIDSPGHVDFS-------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkP-vlv~NK~D 161 (842)
T KOG0469|consen 97 --GFLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKP-VLVMNKMD 161 (842)
T ss_pred --ceeEEeccCCCcccch-------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccc-eEEeehhh
Confidence 1137899999998753 3355667889999999998876555555556666653 1245 67899999
Q ss_pred CC------ChHHHHHHHHHHHHh
Q 016700 308 LP------EARDRLQSLTEEILK 324 (384)
Q Consensus 308 l~------~~~e~~~~l~~~~~~ 324 (384)
.. ..++..+.++...+.
T Consensus 162 RAlLELq~~~EeLyqtf~R~VE~ 184 (842)
T KOG0469|consen 162 RALLELQLSQEELYQTFQRIVEN 184 (842)
T ss_pred HHHHhhcCCHHHHHHHHHHHHhc
Confidence 52 334555555555443
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.05 E-value=0.0036 Score=62.81 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=75.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC--Cc-cCCCCceeecce-EEe----------------cCCCC-----CCccccC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPNL-GRL----------------DGDPT-----LGAEKYS 230 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~--~i-a~~~~tT~~p~~-g~v----------------~~~~~-----~~~~~~~ 230 (384)
..-|+|||++||||||-|-.|...-. .. ....+.|.|... |.+ -.++. ..... .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR-D 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-c
Confidence 34589999999999999988864321 00 111223332210 100 00000 00000 1
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
..++++||.|....+.+...--..+.... ...-..+|++++.. .++ +.+.+..|.. . ..-=++++|+|...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~d---lkei~~~f~~--~-~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK--YED---LKEIIKQFSL--F-PIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc--hHH---HHHHHHHhcc--C-CcceeEEEcccccC
Confidence 26999999998543222111111222222 22334566777642 334 3444455542 1 12357799999765
Q ss_pred hHHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 311 ARDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 311 ~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
. +-.+...+.....+..-..++..+-+-+
T Consensus 353 s---~G~~~s~~~e~~~PV~YvT~GQ~VPeDI 381 (407)
T COG1419 353 S---LGNLFSLMYETRLPVSYVTNGQRVPEDI 381 (407)
T ss_pred c---hhHHHHHHHHhCCCeEEEeCCCCCCchh
Confidence 4 3445555555555544444566555544
No 416
>PRK01889 GTPase RsgA; Reviewed
Probab=97.01 E-value=0.00065 Score=67.80 Aligned_cols=61 Identities=33% Similarity=0.347 Sum_probs=38.6
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCC-------CCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADY-------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~-------~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
.++..-.++|+|.+|+|||||+|.|.+.... .+.. ..+|....+..+. ....++||||+.+
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~-----------~~~~l~DtpG~~~ 259 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP-----------SGGLLIDTPGMRE 259 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec-----------CCCeecCCCchhh
Confidence 3344457999999999999999999975432 1211 1233333333332 1346889999954
No 417
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.00 E-value=0.0019 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 016700 179 VGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~ 199 (384)
|.|.|+||+|||+|++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 679999999999999999875
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.87 E-value=0.0087 Score=46.51 Aligned_cols=72 Identities=24% Similarity=0.198 Sum_probs=46.4
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHHH
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 258 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~ 258 (384)
+++.|.+|+||||+...|...-.. .. .....++ .++++|+|+....... .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g-------~~v~~~~------------d~iivD~~~~~~~~~~------~~~~~ 55 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RG-------KRVLLID------------DYVLIDTPPGLGLLVL------LCLLA 55 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CC-------CeEEEEC------------CEEEEeCCCCccchhh------hhhhh
Confidence 678899999999999998754211 01 1111221 5799999988653110 01345
Q ss_pred cccCCeEEEEeeCCCCCC
Q 016700 259 LRRTRLLVHVIDAAAENP 276 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~ 276 (384)
+..+|.++++++......
T Consensus 56 ~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 56 LLAADLVIIVTTPEALAV 73 (99)
T ss_pred hhhCCEEEEecCCchhhH
Confidence 677899999998876443
No 419
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.85 E-value=0.005 Score=63.55 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCCEEEEEeCCCCCCh--------HHHHHHHHHHH----HhcC--CcccccccccCHHHHHHHHHhccC
Q 016700 296 ERPFIVVLNKIDLPEA--------RDRLQSLTEEI----LKIG--CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 296 ~~p~ivV~NK~Dl~~~--------~e~~~~l~~~~----~~~~--~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..|++||++|+|.... ++.++-+...+ -.+| +..++++...+++-++..|...+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 4799999999996431 23233333333 3444 335677788888887777766543
No 420
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.83 E-value=0.021 Score=50.28 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=43.4
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.++|+|||+... ......+..||.+|+|++.+.. .......+.+.++... .....+|+|++|...
T Consensus 64 d~viiD~p~~~~---------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~----~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE---------RGFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG----IKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc---------HHHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC----CceEEEEEeCCcccc
Confidence 689999997643 1234556789999999988753 3344444555555421 245789999998653
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.81 E-value=0.0097 Score=47.96 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=45.8
Q ss_pred EEEEe-cCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 179 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 179 V~lvG-~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
|+++| ..|+||||+...|...-.. .....-.++.++. ..++|+|+|+... ..+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~--------~~~~vl~~d~d~~-------~d~viiD~p~~~~---------~~~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR--------RGKRVLLIDLDPQ-------YDYIIIDTPPSLG---------LLTRN 57 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh--------CCCcEEEEeCCCC-------CCEEEEeCcCCCC---------HHHHH
Confidence 56777 6899999998877643111 1112223333332 2689999998743 23445
Q ss_pred HcccCCeEEEEeeCCC
Q 016700 258 HLRRTRLLVHVIDAAA 273 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~ 273 (384)
.+..||.++++++.+.
T Consensus 58 ~l~~ad~viv~~~~~~ 73 (104)
T cd02042 58 ALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHCCEEEEeccCCH
Confidence 6778999999998764
No 422
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.68 E-value=0.0024 Score=56.84 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=29.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEe
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 218 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v 218 (384)
-|+|+|++|||||||++.|....+.+ ...+.+|..|..+.+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~ 44 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEV 44 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCc
Confidence 48999999999999999999865443 333456666655443
No 423
>PRK01889 GTPase RsgA; Reviewed
Probab=96.64 E-value=0.0077 Score=60.15 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=52.7
Q ss_pred cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcCCcccccccccC
Q 016700 259 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGCDKVTSETELS 337 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~~~~~sa~t~~g 337 (384)
+..+|.+++|+++........++.++..+.. .+.|.++|+||+||.+..+ ..+.+........+..+++.++.+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCcc
Confidence 4678999999999643333333334333333 3577799999999976422 223333321112344678889999
Q ss_pred HHHHHHHHHh
Q 016700 338 SEDAVKSLST 347 (384)
Q Consensus 338 v~e~l~~l~~ 347 (384)
++++...+..
T Consensus 185 l~~L~~~L~~ 194 (356)
T PRK01889 185 LDVLAAWLSG 194 (356)
T ss_pred HHHHHHHhhc
Confidence 9999888853
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=96.62 E-value=0.013 Score=60.01 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.2
Q ss_pred ceEEEEecCCCcHHHHHHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~ 197 (384)
.-|.++|++|+||||++-.|.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 458899999999999766654
No 425
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.61 E-value=0.016 Score=54.09 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=55.4
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHH---HHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY---RTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~---~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
.++|+||+|.-.. .....+.++|++|.=.-.+..+..+.. +.+.+..+.. -...|.-|++|++.-
T Consensus 85 d~VlvDleG~as~---------~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~---~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 85 DFVLVDLEGGASE---------LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE---RRDIPAAVLFTRVPA 152 (231)
T ss_pred CEEEEeCCCCCch---------hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh---CCCCCeeEEEecCCc
Confidence 6899999997331 122346789988876555543333333 3333333222 246899999999984
Q ss_pred CChHHHHHHHHHHHHhcCCcccccccccCHHHHH
Q 016700 309 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 342 (384)
Q Consensus 309 ~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~e~l 342 (384)
.........+.+.+..+.+..+.....+...+.+
T Consensus 153 ~~~~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~ 186 (231)
T PF07015_consen 153 ARLTRAQRIISEQLESLPVLDTELHERDAFRAMF 186 (231)
T ss_pred chhhHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 4322323334455565555555544544444444
No 426
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.05 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+...+|++.|+||+|||||+..+.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4567899999999999999999874
No 427
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.56 E-value=0.016 Score=57.33 Aligned_cols=23 Identities=57% Similarity=0.761 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
++|++||.-.|||||||-.|+..
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred EEEEEEecccCCcceeEeeeeec
Confidence 68999999999999999888753
No 428
>PRK13695 putative NTPase; Provisional
Probab=96.55 E-value=0.031 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
++|+|+|.+++|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999997643
No 429
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.54 E-value=0.0068 Score=60.29 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=49.0
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 325 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~ 325 (384)
+...|.+-++.+|+||.|+|+.++......+ +-+.+..- -.++..|+|+||+||.+ .|.++.+...+...
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~---~gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQA---HGNKKLILVLNKIDLVP-REVVEKWLVYLRRE 205 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhc---cCCceEEEEeehhccCC-HHHHHHHHHHHHhh
Confidence 4556778889999999999999875443322 11122111 13488999999999997 56778888777664
No 430
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.45 E-value=0.0037 Score=53.64 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=28.9
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCC--ccCCCCceeecceEEe
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRL 218 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~--ia~~~~tT~~p~~g~v 218 (384)
|+|+|++|+|||||++.|....+. ....+.||..|..+.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~ 43 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV 43 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc
Confidence 689999999999999999976432 1334456776655443
No 431
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.44 E-value=0.0078 Score=53.82 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=35.8
Q ss_pred CeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 016700 263 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 325 (384)
Q Consensus 263 d~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~ 325 (384)
|++++|+|+..+....+ ..+.+.+.. . ..++|+|+|+||+|+.+. +....+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l-~--~~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQ-A--GGNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHh-c--cCCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence 78999999987533322 223233211 0 135899999999999864 4455555555544
No 432
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.44 E-value=0.024 Score=57.99 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=36.6
Q ss_pred ceEEEeCCCCccccccccchhHHH--HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~f--l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+||||..... ..+.... +.+.-..+-+++|+|+... .+... ....+.. .. ...=+|+||+|..
T Consensus 184 DvVIIDTaGr~~~d---~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~-~a~~f~~---~v--~i~giIlTKlD~~ 252 (428)
T TIGR00959 184 DVVIVDTAGRLQID---EELMEELAAIKEILNPDEILLVVDAMTG--QDAVN-TAKTFNE---RL--GLTGVVLTKLDGD 252 (428)
T ss_pred CEEEEeCCCccccC---HHHHHHHHHHHHhhCCceEEEEEeccch--HHHHH-HHHHHHh---hC--CCCEEEEeCccCc
Confidence 68999999975321 1111111 1223347788999998642 22222 2222221 11 2346779999965
Q ss_pred C
Q 016700 310 E 310 (384)
Q Consensus 310 ~ 310 (384)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 433
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.41 E-value=0.0032 Score=57.04 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=34.2
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecC
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDG 220 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~ 220 (384)
|+|+|++|||||||+++|....+.+ ...+.||..|..+.+++
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G 49 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEG 49 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCC
Confidence 8899999999999999999876554 44578898887776654
No 434
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.39 E-value=0.0056 Score=63.02 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=94.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+++|||...+|||+|+.+...........|-.-......++.... .-+.+-|-.|..+ .
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs--------~lLlirdeg~~~~------------a 90 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQS--------HLLLIRDEGGHPD------------A 90 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccc--------eEeeeecccCCch------------h
Confidence 3689999999999999988654332211111111111111121111 1345556555322 3
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-------HHHHHHHHHHHHhcCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------RDRLQSLTEEILKIGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-------~e~~~~l~~~~~~~~~~~ 329 (384)
.+.+..|++|||+...+...++.+..+..++..|.- ....|.++|..+- .... +.....+...+......+
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~-r~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN-ISDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHHHHhhcccccc-cccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceee
Confidence 446778999999999998999988888777776653 3457777777763 3211 223344444455556677
Q ss_pred cccccccCHHHHHHHHHhccCc
Q 016700 330 VTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..+.++..++..|+.++.....
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQ 190 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHH
Confidence 8888999999999998876543
No 435
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.11 E-value=0.012 Score=60.42 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=48.6
Q ss_pred cchhHHHHHHcccCCeEEEEeeCCCCCCHh--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC
Q 016700 249 KGLGRNFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 326 (384)
Q Consensus 249 ~gl~~~fl~~i~~ad~il~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~ 326 (384)
-.+.+...+-++++|+||.+||+.++.-+. ++.....+.. ..+..++++||+||...+ ....+.+.+....
T Consensus 162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d------~~K~~~LLvNKaDLl~~~-qr~aWa~YF~~~n 234 (562)
T KOG1424|consen 162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD------PSKANVLLVNKADLLPPE-QRVAWAEYFRQNN 234 (562)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc------cccceEEEEehhhcCCHH-HHHHHHHHHHhcC
Confidence 345667788999999999999999864432 2222222221 247789999999999754 4556666665544
Q ss_pred C
Q 016700 327 C 327 (384)
Q Consensus 327 ~ 327 (384)
+
T Consensus 235 i 235 (562)
T KOG1424|consen 235 I 235 (562)
T ss_pred c
Confidence 3
No 436
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.03 E-value=0.0031 Score=53.29 Aligned_cols=30 Identities=37% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
++++..-.++|+|.+|+|||||++.|.+..
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 345555679999999999999999999863
No 437
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.98 E-value=0.036 Score=45.95 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-+.|+|.||+|||+|++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 438
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.88 E-value=0.0077 Score=55.31 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=29.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEe
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 218 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v 218 (384)
-|+|+|++|||||||++.|....+.. ...+.||..+..+.+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~ 56 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEI 56 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCC
Confidence 38899999999999999998655433 445566765544433
No 439
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0046 Score=55.73 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=34.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD 221 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~ 221 (384)
=++|.|++|||||||+++|.... .+ -....||..|..|.+++.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~ 49 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGV 49 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCc
Confidence 48899999999999999999887 44 445678888888877653
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.77 E-value=0.008 Score=49.61 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|.|+|+|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 441
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.023 Score=56.72 Aligned_cols=151 Identities=22% Similarity=0.216 Sum_probs=85.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCC------------------CCccCCC-------------CceeecceEEecCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAK------------------PDIADYP-------------FTTLMPNLGRLDGDP 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~------------------~~ia~~~-------------~tT~~p~~g~v~~~~ 222 (384)
|.-.++.++|.--+||||+=..|.... .+-+.|. +.|......++...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte- 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE- 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-
Confidence 344579999999999999877664210 0111111 11222222222211
Q ss_pred CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHh------HHHHHHHHHHhcCCCCCC
Q 016700 223 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN------DYRTVKEELRMYNPDYLE 296 (384)
Q Consensus 223 ~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~------~~~~l~~eL~~~~~~l~~ 296 (384)
...++|.|+||+ ..+...+..-..+||+-++|+.+...+-.. +.+....+.+. ..-
T Consensus 156 -------~~~ftiLDApGH-------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt----~gv 217 (501)
T KOG0459|consen 156 -------NKRFTILDAPGH-------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGV 217 (501)
T ss_pred -------ceeEEeeccCcc-------cccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh----hcc
Confidence 247999999998 445556666678899999999885421111 11111111111 123
Q ss_pred CCEEEEEeCCCCCC---hH----HHHHHHHHHHHhcCC--------cccccccccCHHHHHH
Q 016700 297 RPFIVVLNKIDLPE---AR----DRLQSLTEEILKIGC--------DKVTSETELSSEDAVK 343 (384)
Q Consensus 297 ~p~ivV~NK~Dl~~---~~----e~~~~l~~~~~~~~~--------~~~sa~t~~gv~e~l~ 343 (384)
+..|+++||+|-+. .. |..+.+...+..+++ .+++.-++.++.+...
T Consensus 218 ~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 218 KHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 67899999999764 22 344444555554433 3556667777777665
No 442
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.71 E-value=0.0077 Score=60.75 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=48.6
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCC----------HhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~----------~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.++|+.|+.. -++.|..+++..++||||+++++.+. ..+-..+.+++.. .+.+.+.|++|
T Consensus 237 ~~~~~DvGGqr~-------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~-~~~~~~~~iil 308 (389)
T PF00503_consen 237 KFRLIDVGGQRS-------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN-NPWFKNTPIIL 308 (389)
T ss_dssp EEEEEEETSSGG-------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT-SGGGTTSEEEE
T ss_pred ccceecCCCCch-------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh-CcccccCceEE
Confidence 468999999843 46788899999999999999886221 2222333344433 23445799999
Q ss_pred EEeCCCCC
Q 016700 302 VLNKIDLP 309 (384)
Q Consensus 302 V~NK~Dl~ 309 (384)
++||+|+.
T Consensus 309 ~lnK~D~f 316 (389)
T PF00503_consen 309 FLNKIDLF 316 (389)
T ss_dssp EEE-HHHH
T ss_pred eeecHHHH
Confidence 99999975
No 443
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.69 E-value=0.0093 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|++|+|||||+++|...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 444
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.67 E-value=0.015 Score=57.58 Aligned_cols=72 Identities=19% Similarity=0.352 Sum_probs=50.0
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCH--hH--HHHHHHHHHhc-----CCCCCCCCEEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV--ND--YRTVKEELRMY-----NPDYLERPFIVV 302 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~--~~--~~~l~~eL~~~-----~~~l~~~p~ivV 302 (384)
.+.+.|++|+.. -++.|....+.++++||+++.|+.+.. ++ ...+.+.+..+ .+-+.+.++|+.
T Consensus 196 ~f~~~DvGGQRs-------eRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF 268 (354)
T KOG0082|consen 196 KFRMFDVGGQRS-------ERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF 268 (354)
T ss_pred ceEEEeCCCcHH-------HhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence 689999999843 356777788999999999999874321 11 12222222222 234567999999
Q ss_pred EeCCCCCC
Q 016700 303 LNKIDLPE 310 (384)
Q Consensus 303 ~NK~Dl~~ 310 (384)
+||.||..
T Consensus 269 LNK~DLFe 276 (354)
T KOG0082|consen 269 LNKKDLFE 276 (354)
T ss_pred eecHHHHH
Confidence 99999874
No 445
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.58 E-value=0.0099 Score=63.77 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=31.1
Q ss_pred ceEEEeCCCCcccccc------ccchhHHHHHHcccCCeEEEEeeCCC
Q 016700 232 EATLADLPGLIEGAHL------GKGLGRNFLRHLRRTRLLVHVIDAAA 273 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~------~~gl~~~fl~~i~~ad~il~VvD~s~ 273 (384)
.++++|+||+..-+.. ...+....+.|+..-.++++.|...+
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 4899999999865432 23455667888999888888887654
No 446
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.58 E-value=0.085 Score=53.38 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-hcCCccc----ccccccCHHHHHHHHHhccC
Q 016700 279 DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGCDKV----TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 279 ~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-~~~~~~~----sa~t~~gv~e~l~~l~~~~~ 350 (384)
.-+...+||+. .++|+++++|-.+-.. .+ ...+.+.+. +++.... .--+.+.+..++..+..+..
T Consensus 168 AEervI~ELk~-----igKPFvillNs~~P~s-~e-t~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 168 AEERVIEELKE-----IGKPFVILLNSTKPYS-EE-TQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEFP 237 (492)
T ss_pred HHHHHHHHHHH-----hCCCEEEEEeCCCCCC-HH-HHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcCC
Confidence 33556678876 4699999999877433 33 344444443 3444322 22245566666666655554
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.48 E-value=0.013 Score=43.39 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=18.7
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-.+|.|..++|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999863
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.47 E-value=0.0079 Score=56.10 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.|+++..--|+|+|++|||||||||.|.+-.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44555666679999999999999999998754
No 449
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.45 E-value=0.012 Score=53.41 Aligned_cols=41 Identities=34% Similarity=0.455 Sum_probs=29.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEe
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 218 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v 218 (384)
-|+|+|++|||||||++.|.+..+.+ ...+.||..|..+.+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~ 48 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV 48 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc
Confidence 48999999999999999999875422 233456666655543
No 450
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=0.009 Score=56.01 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.5
Q ss_pred hhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 168 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 168 ~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+++...-+|+|||.+|||||||++.|++.-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 355677777899999999999999999999863
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.0085 Score=56.36 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=24.2
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
|.+...=-|+|+|++|||||||++.+.+-.
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444469999999999999999999864
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.0089 Score=55.21 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.|+|+|++|+||||||++|-.-+
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44455566679999999999999999998754
No 453
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.38 E-value=0.016 Score=52.26 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=27.4
Q ss_pred hhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 168 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 168 ~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+.++....++|+|.+|||||||+++|.+.-
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355566677789999999999999999999763
No 454
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.35 E-value=0.11 Score=50.53 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=64.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccc-----------
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG----------- 244 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~----------- 244 (384)
++.+.|+|.+|-|||++++++....+...+.. .... .++.+.+|---+.
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~-------------------PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERI-------------------PVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-Cccc-------------------cEEEEecCCCCChHHHHHHHHHHh
Confidence 46799999999999999999998776432211 1111 3444444432210
Q ss_pred -----ccc-ccchhHHHHHHcccCCeEEEEeeCCC---CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 016700 245 -----AHL-GKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 305 (384)
Q Consensus 245 -----a~~-~~gl~~~fl~~i~~ad~il~VvD~s~---~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK 305 (384)
... ...+....+..++.+.+=++|||=-+ .-+....+.+++.|+.... ....|+|.|+++
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N-eL~ipiV~vGt~ 189 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN-ELQIPIVGVGTR 189 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh-ccCCCeEEeccH
Confidence 000 01133344566788888899999543 1223334455556655443 347999988874
No 455
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.11 Score=52.80 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.+-+.+-.+|+|||+.|+||||||..|++.
T Consensus 606 ldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 606 LDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ccccccccceeEEECCCCccHHHHHHHHhcC
Confidence 4444556678999999999999999999975
No 456
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.30 E-value=0.014 Score=49.43 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 016700 179 VGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~ 199 (384)
|.++|+|+||||||...|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999854
No 457
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.011 Score=54.45 Aligned_cols=31 Identities=39% Similarity=0.426 Sum_probs=25.2
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.++..--++|+|+.|||||||++.|++.-
T Consensus 21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 21 SLDLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred ceeccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 3445555568999999999999999999863
No 458
>PRK08118 topology modulation protein; Reviewed
Probab=95.27 E-value=0.014 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+|.|+|+||||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 459
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.26 E-value=0.013 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=18.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999866
No 460
>PRK07261 topology modulation protein; Provisional
Probab=95.24 E-value=0.014 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+|+|+|.||+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 461
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.0092 Score=54.59 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=25.1
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++.. .++|+|++|+|||||++.|.+..
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3455556 79999999999999999999864
No 462
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.22 E-value=0.056 Score=53.23 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=59.8
Q ss_pred eEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH
Q 016700 233 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 312 (384)
Q Consensus 233 i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~ 312 (384)
..+-+.||+... ..+.+.+.+..+|+++.|+|+.++..... ..+..+. ..+|.++|+||+||.+..
T Consensus 12 ~~i~~~~g~~~k------~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v---~~k~~i~vlNK~DL~~~~ 77 (322)
T COG1161 12 NKIQWFPGHMKK------AKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV---KEKPKLLVLNKADLAPKE 77 (322)
T ss_pred ccccCCCCchHH------HHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH---ccCCcEEEEehhhcCCHH
Confidence 345566888643 34556677899999999999987654322 1222222 257779999999999754
Q ss_pred HHHHHHHHHHHhc-CC--cccccccccCHHHHH
Q 016700 313 DRLQSLTEEILKI-GC--DKVTSETELSSEDAV 342 (384)
Q Consensus 313 e~~~~l~~~~~~~-~~--~~~sa~t~~gv~e~l 342 (384)
. .+.+.+.+... +. ...++....+.....
T Consensus 78 ~-~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 78 V-TKKWKKYFKKEEGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred H-HHHHHHHHHhcCCCccEEEEeecccCccchH
Confidence 4 66666666655 33 344444444444433
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.15 E-value=0.017 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 016700 179 VGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~ 199 (384)
|++.|.+++||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 464
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.15 E-value=0.011 Score=54.35 Aligned_cols=31 Identities=35% Similarity=0.318 Sum_probs=25.7
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+...-.++|+|++|+|||||++.|.+..
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555679999999999999999999864
No 465
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.15 E-value=0.011 Score=54.36 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...-.++|+|+.|+|||||++.|++..
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 344555579999999999999999999874
No 466
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.011 Score=55.15 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=25.6
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|+.|||||||++.|.+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555679999999999999999999864
No 467
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.13 E-value=0.011 Score=53.82 Aligned_cols=30 Identities=30% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++..-.++|+|+.|||||||++.|++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445555579999999999999999999864
No 468
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.11 E-value=0.016 Score=52.29 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=21.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.|+|+|++|+|||||+|.+.+-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 69999999999999999998864
No 469
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.09 E-value=0.011 Score=53.64 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=25.6
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|.+|+|||||++.|.+..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555679999999999999999999864
No 470
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.08 E-value=0.012 Score=53.90 Aligned_cols=30 Identities=33% Similarity=0.321 Sum_probs=24.7
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++...-.++|+|+.|+|||||++.|++..
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344445569999999999999999999864
No 471
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.017 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+|.|+|+|||||||+...|+..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999976
No 472
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.013 Score=54.06 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=25.6
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|..|+|||||++.|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555579999999999999999999864
No 473
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.03 E-value=0.012 Score=52.85 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=24.0
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+...-.++|+|+.|+|||||++.|.+..
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444569999999999999999999864
No 474
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.02 E-value=0.013 Score=53.68 Aligned_cols=31 Identities=35% Similarity=0.304 Sum_probs=25.7
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|..|+|||||++.|.+..
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555679999999999999999999864
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.01 E-value=0.012 Score=52.80 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHc
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+++...-.++|+|+.|+|||||++.+..
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3455556799999999999999999863
No 476
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.01 E-value=0.014 Score=54.21 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=25.5
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|..|||||||++.|++..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555579999999999999999999864
No 477
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.013 Score=53.64 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=25.8
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|+.|||||||++.|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455556679999999999999999999864
No 478
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.00 E-value=0.014 Score=53.99 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=25.8
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.++..-.++|+|+.|+|||||++.|++..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445556679999999999999999999864
No 479
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.00 E-value=0.015 Score=51.19 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=26.5
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.++..-.++|+|..|+|||||++.|.+..
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455666679999999999999999999864
No 480
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.97 E-value=0.013 Score=53.99 Aligned_cols=31 Identities=35% Similarity=0.348 Sum_probs=25.7
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|+.|+|||||++.|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455555679999999999999999999864
No 481
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.013 Score=53.52 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=25.4
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|..|+|||||++.|++..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555579999999999999999999864
No 482
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.014 Score=52.19 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|+|||||++.|.+..
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455556679999999999999999999864
No 483
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=94.93 E-value=0.13 Score=50.84 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
...++|.+||+.++|||||...|.+..
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nya 127 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYA 127 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHH
Confidence 458999999999999999999998653
No 484
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.92 E-value=0.013 Score=50.59 Aligned_cols=30 Identities=43% Similarity=0.514 Sum_probs=24.9
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
++++..--++|+|.+|+|||||++.|.+..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 445555578999999999999999999864
No 485
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.92 E-value=0.014 Score=53.76 Aligned_cols=30 Identities=33% Similarity=0.355 Sum_probs=25.2
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...-.++|+|+.|+|||||++.|.+..
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445555579999999999999999999874
No 486
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.92 E-value=0.014 Score=53.44 Aligned_cols=31 Identities=29% Similarity=0.244 Sum_probs=25.6
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|..|+|||||++.|.+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555579999999999999999999864
No 487
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.90 E-value=0.015 Score=54.25 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=25.9
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.++++..-.++|+|+.|+|||||++.|.+.
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445556667999999999999999999986
No 488
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.90 E-value=0.014 Score=53.42 Aligned_cols=32 Identities=34% Similarity=0.349 Sum_probs=26.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|+|||||++.|.+..
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34455556679999999999999999999864
No 489
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.90 E-value=0.015 Score=53.18 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=24.9
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++...-.++|+|+.|+|||||++.|++..
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344455579999999999999999999874
No 490
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.014 Score=53.88 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=25.8
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|+.|||||||++.|.+..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455555679999999999999999999874
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.89 E-value=0.016 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.2
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++..-.++|+|+.|+|||||++.|++..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34445579999999999999999999864
No 492
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.87 E-value=0.014 Score=53.64 Aligned_cols=30 Identities=33% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++..-.++|+|++|+|||||++.|.+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444555579999999999999999999874
No 493
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.87 E-value=0.015 Score=54.19 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=25.6
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|+.|+|||||++.|.+..
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3445555679999999999999999999864
No 494
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.85 E-value=0.024 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.765 Sum_probs=19.4
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 016700 179 VGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~ 199 (384)
|+|.|.|||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 495
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.84 E-value=0.016 Score=54.25 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=25.7
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|+.|+|||||++.|.+..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3445555679999999999999999999864
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.84 E-value=0.015 Score=53.28 Aligned_cols=30 Identities=40% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++..-.++|+|..|+|||||++.|++..
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555579999999999999999999864
No 497
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.82 E-value=0.017 Score=52.28 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=25.8
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|.+|+|||||++.|.+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555679999999999999999999874
No 498
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.82 E-value=0.016 Score=52.63 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=26.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.+...-.++|+|+.|+|||||++.|++..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455556679999999999999999999864
No 499
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.82 E-value=0.015 Score=53.44 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.1
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++...-.++|+|..|+|||||++.|++..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 444555579999999999999999999864
No 500
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.82 E-value=0.015 Score=53.90 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++...-.++|+|..|||||||++.|.+..
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444555579999999999999999999874
Done!