Query 016700
Match_columns 384
No_of_seqs 392 out of 3126
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 8.9E-70 3.1E-74 534.4 21.9 309 13-351 9-330 (342)
2 1udx_A The GTP-binding protein 100.0 1.4E-62 4.9E-67 494.1 24.1 306 13-351 9-325 (416)
3 1xzp_A Probable tRNA modificat 99.9 2.3E-27 7.9E-32 242.5 -6.0 282 21-350 92-404 (482)
4 4a9a_A Ribosome-interacting GT 99.9 1.1E-23 3.6E-28 208.7 12.2 126 174-309 70-195 (376)
5 3iev_A GTP-binding protein ERA 99.9 4.7E-21 1.6E-25 185.2 15.9 163 178-353 12-184 (308)
6 3tkl_A RAS-related protein RAB 99.8 5.3E-21 1.8E-25 170.0 11.2 163 174-351 14-179 (196)
7 2dyk_A GTP-binding protein; GT 99.8 1.1E-20 3.7E-25 162.3 12.2 159 176-349 1-160 (161)
8 1g16_A RAS-related protein SEC 99.8 1.1E-20 3.8E-25 163.5 11.5 160 176-350 3-164 (170)
9 1wf3_A GTP-binding protein; GT 99.8 3.2E-20 1.1E-24 178.9 14.5 162 178-351 9-173 (301)
10 4dsu_A GTPase KRAS, isoform 2B 99.8 1.9E-20 6.5E-25 165.0 11.6 160 177-351 5-166 (189)
11 3tw8_B RAS-related protein RAB 99.8 1.3E-20 4.4E-25 164.7 9.9 161 175-351 8-171 (181)
12 2il1_A RAB12; G-protein, GDP, 99.8 1.4E-20 4.9E-25 168.0 10.4 160 175-349 25-188 (192)
13 1wms_A RAB-9, RAB9, RAS-relate 99.8 4E-20 1.4E-24 161.4 12.7 162 176-350 7-173 (177)
14 1c1y_A RAS-related protein RAP 99.8 6E-20 2.1E-24 158.4 13.5 158 177-349 4-165 (167)
15 3clv_A RAB5 protein, putative; 99.8 6.3E-20 2.2E-24 162.9 14.0 163 176-349 7-202 (208)
16 2efe_B Small GTP-binding prote 99.8 7.8E-20 2.7E-24 160.2 14.3 161 176-351 12-175 (181)
17 3q72_A GTP-binding protein RAD 99.8 2.3E-20 7.9E-25 161.3 10.7 157 176-349 2-162 (166)
18 1z0j_A RAB-22, RAS-related pro 99.8 7.7E-20 2.6E-24 158.1 14.0 158 176-350 6-168 (170)
19 2q3h_A RAS homolog gene family 99.8 1E-20 3.6E-25 169.4 8.8 161 173-350 17-194 (201)
20 3cph_A RAS-related protein SEC 99.8 3E-20 1E-24 167.5 11.8 163 173-350 17-181 (213)
21 1x3s_A RAS-related protein RAB 99.8 4.9E-20 1.7E-24 163.4 12.9 162 176-351 15-178 (195)
22 2gj8_A MNME, tRNA modification 99.8 5.2E-21 1.8E-25 168.5 6.5 160 176-350 4-165 (172)
23 1ky3_A GTP-binding protein YPT 99.8 4.8E-20 1.6E-24 161.2 12.6 163 175-349 7-176 (182)
24 1z0f_A RAB14, member RAS oncog 99.8 6.9E-20 2.4E-24 159.8 13.4 159 176-349 15-176 (179)
25 1r2q_A RAS-related protein RAB 99.8 8.3E-20 2.8E-24 157.7 13.6 157 177-350 7-168 (170)
26 2qu8_A Putative nucleolar GTP- 99.8 3.6E-20 1.2E-24 170.2 12.0 165 176-351 29-205 (228)
27 1ek0_A Protein (GTP-binding pr 99.8 7.3E-20 2.5E-24 158.1 12.9 158 177-349 4-167 (170)
28 2fg5_A RAB-22B, RAS-related pr 99.8 8.9E-20 3.1E-24 162.7 13.8 160 175-351 22-186 (192)
29 2bme_A RAB4A, RAS-related prot 99.8 6.2E-20 2.1E-24 161.7 12.6 161 175-350 9-172 (186)
30 2y8e_A RAB-protein 6, GH09086P 99.8 4.5E-20 1.5E-24 161.0 11.5 159 177-350 15-176 (179)
31 2g6b_A RAS-related protein RAB 99.8 9.8E-20 3.3E-24 159.4 13.7 159 176-350 10-173 (180)
32 2hxs_A RAB-26, RAS-related pro 99.8 1.1E-20 3.8E-25 165.2 7.5 164 176-351 6-173 (178)
33 2hup_A RAS-related protein RAB 99.8 5.7E-20 2E-24 165.6 12.2 163 173-350 26-192 (201)
34 2nzj_A GTP-binding protein REM 99.8 1.2E-19 4.2E-24 157.8 13.9 160 176-349 4-167 (175)
35 3gee_A MNME, tRNA modification 99.8 4.6E-20 1.6E-24 188.3 12.9 165 173-350 230-397 (476)
36 2wji_A Ferrous iron transport 99.8 9.1E-20 3.1E-24 158.9 13.0 155 177-349 4-163 (165)
37 2ew1_A RAS-related protein RAB 99.8 9.7E-20 3.3E-24 164.8 13.1 162 174-350 24-188 (201)
38 1u8z_A RAS-related protein RAL 99.8 7.8E-20 2.7E-24 157.3 11.9 158 177-349 5-165 (168)
39 2bov_A RAla, RAS-related prote 99.8 7.8E-20 2.7E-24 163.7 12.2 161 176-351 14-177 (206)
40 1wxq_A GTP-binding protein; st 99.8 3E-21 1E-25 192.9 3.3 166 177-343 1-262 (397)
41 4dhe_A Probable GTP-binding pr 99.8 1.2E-19 4.2E-24 165.1 13.7 163 176-351 29-211 (223)
42 2h57_A ADP-ribosylation factor 99.8 8.9E-20 3E-24 162.1 12.4 158 175-350 20-186 (190)
43 3q85_A GTP-binding protein REM 99.8 6.9E-20 2.4E-24 158.7 11.4 161 176-349 2-165 (169)
44 1vg8_A RAS-related protein RAB 99.8 5.5E-20 1.9E-24 165.0 11.1 164 175-351 7-175 (207)
45 4bas_A ADP-ribosylation factor 99.8 1.1E-19 3.8E-24 161.8 13.0 159 176-350 17-188 (199)
46 1zbd_A Rabphilin-3A; G protein 99.8 1.3E-19 4.6E-24 162.4 13.6 161 175-350 7-170 (203)
47 2gf9_A RAS-related protein RAB 99.8 7.1E-20 2.4E-24 162.6 11.6 161 174-349 20-183 (189)
48 3iby_A Ferrous iron transport 99.8 1.7E-20 5.8E-25 176.7 7.8 155 176-348 1-164 (256)
49 2bcg_Y Protein YP2, GTP-bindin 99.8 9.7E-20 3.3E-24 163.9 12.5 162 175-351 7-171 (206)
50 1r8s_A ADP-ribosylation factor 99.8 1.5E-19 5E-24 155.9 13.0 154 177-350 1-161 (164)
51 2a5j_A RAS-related protein RAB 99.8 5.7E-20 1.9E-24 163.7 10.6 161 175-350 20-183 (191)
52 3bc1_A RAS-related protein RAB 99.8 2.4E-19 8.4E-24 158.2 14.5 167 176-350 11-184 (195)
53 1upt_A ARL1, ADP-ribosylation 99.8 1.6E-19 5.5E-24 156.5 13.0 156 174-349 5-167 (171)
54 1z08_A RAS-related protein RAB 99.8 4.7E-20 1.6E-24 159.7 9.6 159 176-349 6-167 (170)
55 1m2o_B GTP-binding protein SAR 99.8 1.2E-19 4E-24 162.1 12.4 152 177-348 24-189 (190)
56 1z2a_A RAS-related protein RAB 99.8 4.4E-20 1.5E-24 159.3 9.4 158 176-349 5-165 (168)
57 2fu5_C RAS-related protein RAB 99.8 2E-20 6.8E-25 164.7 7.0 161 175-350 7-170 (183)
58 1f6b_A SAR1; gtpases, N-termin 99.8 9E-20 3.1E-24 164.1 11.3 153 177-349 26-197 (198)
59 2atx_A Small GTP binding prote 99.8 2.3E-19 7.7E-24 159.8 13.7 157 176-349 18-191 (194)
60 2a9k_A RAS-related protein RAL 99.8 1.6E-19 5.5E-24 158.5 12.6 160 176-350 18-180 (187)
61 4dkx_A RAS-related protein RAB 99.8 1.8E-19 6.1E-24 165.6 13.3 157 177-351 14-176 (216)
62 1zj6_A ADP-ribosylation factor 99.8 1.8E-19 6E-24 159.8 12.8 157 175-351 15-178 (187)
63 2erx_A GTP-binding protein DI- 99.8 1.3E-19 4.4E-24 156.8 11.5 160 177-350 4-166 (172)
64 1mky_A Probable GTP-binding pr 99.8 1.2E-19 4.2E-24 183.4 12.9 158 177-350 2-165 (439)
65 1z06_A RAS-related protein RAB 99.8 1.2E-19 4.1E-24 161.1 11.3 161 175-349 19-186 (189)
66 3cbq_A GTP-binding protein REM 99.8 9.3E-20 3.2E-24 163.8 10.7 162 176-350 23-187 (195)
67 3t5g_A GTP-binding protein RHE 99.8 1.2E-19 4.1E-24 159.4 11.0 161 176-351 6-169 (181)
68 2iwr_A Centaurin gamma 1; ANK 99.8 1.4E-19 4.9E-24 158.5 11.5 154 177-350 8-168 (178)
69 3reg_A RHO-like small GTPase; 99.8 1.7E-19 5.8E-24 160.8 11.8 160 175-351 22-188 (194)
70 2p5s_A RAS and EF-hand domain 99.8 1.6E-19 5.6E-24 161.9 11.7 162 174-350 26-196 (199)
71 2j0v_A RAC-like GTP-binding pr 99.8 9.8E-20 3.4E-24 164.6 10.3 160 176-352 9-181 (212)
72 1zd9_A ADP-ribosylation factor 99.8 2.7E-19 9.2E-24 159.1 12.9 158 174-350 20-184 (188)
73 2lkc_A Translation initiation 99.8 5.3E-20 1.8E-24 160.8 8.1 153 175-350 7-170 (178)
74 2oil_A CATX-8, RAS-related pro 99.8 1.6E-19 5.4E-24 160.7 11.3 161 174-349 23-186 (193)
75 2ce2_X GTPase HRAS; signaling 99.8 4.3E-19 1.5E-23 152.1 13.6 158 177-349 4-163 (166)
76 1kao_A RAP2A; GTP-binding prot 99.8 3.5E-19 1.2E-23 153.1 13.0 158 177-349 4-164 (167)
77 3kkq_A RAS-related protein M-R 99.8 3.7E-19 1.3E-23 156.5 13.4 158 176-349 18-180 (183)
78 3dz8_A RAS-related protein RAB 99.8 4.6E-20 1.6E-24 164.2 7.6 159 174-349 21-184 (191)
79 1ksh_A ARF-like protein 2; sma 99.8 1.4E-19 4.7E-24 159.9 10.6 156 175-350 17-179 (186)
80 3bwd_D RAC-like GTP-binding pr 99.8 7.6E-20 2.6E-24 160.4 8.8 158 176-350 8-180 (182)
81 1fzq_A ADP-ribosylation factor 99.8 2.6E-19 9E-24 158.5 12.4 155 176-350 16-177 (181)
82 3t1o_A Gliding protein MGLA; G 99.8 8.8E-19 3E-23 155.2 15.8 167 176-350 14-191 (198)
83 2gf0_A GTP-binding protein DI- 99.8 3.2E-19 1.1E-23 158.8 13.0 162 176-352 8-172 (199)
84 2fn4_A P23, RAS-related protei 99.8 2E-19 6.9E-24 157.1 11.4 160 176-350 9-171 (181)
85 2h17_A ADP-ribosylation factor 99.8 2E-19 6.7E-24 158.8 11.4 154 175-348 20-180 (181)
86 3b1v_A Ferrous iron uptake tra 99.8 1.6E-19 5.6E-24 171.6 11.5 156 176-350 3-163 (272)
87 3pqc_A Probable GTP-binding pr 99.8 1.4E-18 4.6E-23 153.8 16.6 159 175-350 22-193 (195)
88 4djt_A GTP-binding nuclear pro 99.8 6.4E-20 2.2E-24 166.5 8.2 166 175-356 10-180 (218)
89 2f7s_A C25KG, RAS-related prot 99.8 6.4E-20 2.2E-24 166.4 7.8 169 174-350 23-198 (217)
90 3con_A GTPase NRAS; structural 99.8 4.1E-19 1.4E-23 157.4 12.8 159 177-350 22-182 (190)
91 2o52_A RAS-related protein RAB 99.8 8.7E-20 3E-24 164.1 8.5 162 174-350 23-187 (200)
92 4gzl_A RAS-related C3 botulinu 99.8 1.9E-19 6.5E-24 162.6 10.4 158 175-349 29-203 (204)
93 1svi_A GTP-binding protein YSX 99.8 1.1E-18 3.8E-23 155.0 15.1 158 175-349 22-193 (195)
94 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.6E-19 5.6E-24 158.6 9.6 158 177-351 6-180 (186)
95 1jal_A YCHF protein; nucleotid 99.8 5.2E-19 1.8E-23 174.2 13.6 111 177-287 3-132 (363)
96 3oes_A GTPase rhebl1; small GT 99.8 1.7E-19 5.9E-24 162.0 9.0 164 173-351 21-187 (201)
97 3i8s_A Ferrous iron transport 99.8 9.8E-20 3.4E-24 173.0 7.7 158 177-351 4-169 (274)
98 3cpj_B GTP-binding protein YPT 99.8 2.3E-19 8E-24 164.1 9.8 163 175-352 12-177 (223)
99 2dby_A GTP-binding protein; GD 99.8 2E-19 7E-24 177.8 9.9 111 177-287 2-135 (368)
100 2hjg_A GTP-binding protein ENG 99.8 1.4E-19 4.7E-24 182.9 8.8 162 176-351 175-349 (436)
101 2hjg_A GTP-binding protein ENG 99.8 1.6E-19 5.5E-24 182.4 9.3 156 177-350 4-164 (436)
102 2gco_A H9, RHO-related GTP-bin 99.8 5.1E-19 1.8E-23 159.0 11.1 157 176-349 25-198 (201)
103 3ihw_A Centg3; RAS, centaurin, 99.8 9.7E-19 3.3E-23 155.5 12.8 153 176-349 20-178 (184)
104 2qtf_A Protein HFLX, GTP-bindi 99.8 1E-18 3.5E-23 172.7 14.1 163 176-349 179-352 (364)
105 1m7b_A RND3/RHOE small GTP-bin 99.8 5.6E-19 1.9E-23 156.3 11.0 157 176-349 7-181 (184)
106 2j1l_A RHO-related GTP-binding 99.8 3.4E-19 1.2E-23 162.1 9.8 158 176-350 34-208 (214)
107 2b6h_A ADP-ribosylation factor 99.8 5.5E-19 1.9E-23 158.0 10.9 155 175-349 28-189 (192)
108 2atv_A RERG, RAS-like estrogen 99.8 1.1E-18 3.6E-23 156.0 12.6 158 176-349 28-189 (196)
109 1moz_A ARL1, ADP-ribosylation 99.8 2.3E-19 7.9E-24 157.7 8.1 155 175-349 17-178 (183)
110 4dcu_A GTP-binding protein ENG 99.8 3.4E-19 1.2E-23 181.0 10.4 164 175-352 194-370 (456)
111 3r7w_A Gtpase1, GTP-binding pr 99.8 1E-18 3.5E-23 168.6 13.2 164 177-350 4-180 (307)
112 3a1s_A Iron(II) transport prot 99.8 2.7E-19 9.4E-24 168.6 8.9 155 177-349 6-165 (258)
113 3q3j_B RHO-related GTP-binding 99.8 6.9E-19 2.4E-23 160.3 11.1 160 175-351 26-203 (214)
114 2wjg_A FEOB, ferrous iron tran 99.8 3.4E-19 1.2E-23 157.4 8.4 157 177-351 8-169 (188)
115 3lxw_A GTPase IMAP family memb 99.8 1.6E-18 5.5E-23 162.2 13.4 166 176-350 21-207 (247)
116 2yc2_C IFT27, small RAB-relate 99.8 3E-19 1E-23 159.9 8.0 165 175-350 19-191 (208)
117 2fv8_A H6, RHO-related GTP-bin 99.8 5.7E-19 2E-23 159.5 9.9 157 177-350 26-199 (207)
118 1gwn_A RHO-related GTP-binding 99.8 7E-19 2.4E-23 159.5 10.4 158 175-349 27-202 (205)
119 2e87_A Hypothetical protein PH 99.8 7E-18 2.4E-22 166.1 18.1 164 175-350 166-335 (357)
120 3l0i_B RAS-related protein RAB 99.8 1.2E-20 4.1E-25 169.4 -1.8 162 174-350 31-195 (199)
121 2fh5_B SR-beta, signal recogni 99.8 2.7E-18 9.3E-23 155.3 13.3 158 176-348 7-213 (214)
122 2x77_A ADP-ribosylation factor 99.8 8.5E-19 2.9E-23 155.4 9.6 156 175-350 21-183 (189)
123 1ega_A Protein (GTP-binding pr 99.8 1.6E-18 5.4E-23 167.0 12.0 160 178-352 10-176 (301)
124 3lxx_A GTPase IMAP family memb 99.8 1.3E-18 4.6E-23 161.1 10.9 165 175-349 28-212 (239)
125 3lvq_E ARF-GAP with SH3 domain 99.8 2E-18 6.9E-23 176.8 13.1 157 175-351 321-484 (497)
126 3llu_A RAS-related GTP-binding 99.8 4.8E-18 1.6E-22 152.1 13.7 161 175-349 19-195 (196)
127 2g3y_A GTP-binding protein GEM 99.8 1.7E-18 5.7E-23 158.5 10.4 162 175-349 36-201 (211)
128 3c5c_A RAS-like protein 12; GD 99.8 1.9E-18 6.5E-23 153.7 10.4 159 176-349 21-184 (187)
129 3gj0_A GTP-binding nuclear pro 99.8 3.7E-19 1.3E-23 162.2 5.4 157 176-351 15-175 (221)
130 3geh_A MNME, tRNA modification 99.8 2.2E-19 7.5E-24 182.7 4.3 163 172-351 220-384 (462)
131 2cxx_A Probable GTP-binding pr 99.7 5.5E-18 1.9E-22 149.5 12.0 155 176-350 1-183 (190)
132 1mky_A Probable GTP-binding pr 99.7 5.1E-18 1.7E-22 171.5 13.2 162 176-351 180-355 (439)
133 3o47_A ADP-ribosylation factor 99.7 4.2E-18 1.5E-22 165.9 10.7 155 176-350 165-326 (329)
134 3th5_A RAS-related C3 botulinu 99.6 1.7E-19 5.9E-24 162.2 0.0 158 174-348 28-202 (204)
135 2cjw_A GTP-binding protein GEM 99.7 4.1E-18 1.4E-22 152.6 8.9 161 176-349 6-170 (192)
136 4dcu_A GTP-binding protein ENG 99.7 4.9E-18 1.7E-22 172.5 9.6 157 176-350 23-184 (456)
137 3k53_A Ferrous iron transport 99.7 6.4E-18 2.2E-22 159.8 9.1 158 176-350 3-165 (271)
138 2wkq_A NPH1-1, RAS-related C3 99.7 8.4E-18 2.9E-22 161.7 9.8 160 173-349 152-328 (332)
139 2xtp_A GTPase IMAP family memb 99.7 3.1E-17 1E-21 153.7 12.5 165 176-351 22-208 (260)
140 3qq5_A Small GTP-binding prote 99.7 5.6E-18 1.9E-22 170.4 7.4 160 175-351 33-196 (423)
141 2zej_A Dardarin, leucine-rich 99.7 2E-17 6.9E-22 146.5 9.9 162 177-350 3-177 (184)
142 3dpu_A RAB family protein; roc 99.7 7.2E-18 2.4E-22 174.5 7.5 160 176-352 41-209 (535)
143 3sjy_A Translation initiation 99.7 2.5E-16 8.6E-21 157.4 15.9 165 176-351 8-192 (403)
144 3t5d_A Septin-7; GTP-binding p 99.7 2.6E-16 9E-21 149.0 14.7 164 177-350 9-203 (274)
145 2f9l_A RAB11B, member RAS onco 99.7 1.7E-16 5.8E-21 142.3 11.6 160 176-350 5-167 (199)
146 2aka_B Dynamin-1; fusion prote 99.7 8.9E-17 3E-21 153.0 8.8 169 175-348 25-250 (299)
147 1nrj_B SR-beta, signal recogni 99.7 3E-16 1E-20 142.2 11.7 117 176-311 12-135 (218)
148 2ohf_A Protein OLA1, GTP-bindi 99.7 2.2E-16 7.7E-21 156.9 11.7 119 172-290 18-155 (396)
149 1oix_A RAS-related protein RAB 99.7 4E-16 1.4E-20 139.3 10.9 161 174-349 27-190 (191)
150 1wb1_A Translation elongation 99.7 8E-16 2.7E-20 157.3 14.5 153 176-349 19-187 (482)
151 3j2k_7 ERF3, eukaryotic polype 99.6 1.1E-15 3.9E-20 154.4 15.1 149 174-343 15-217 (439)
152 3def_A T7I23.11 protein; chlor 99.6 1.1E-15 3.7E-20 143.8 13.6 126 176-309 36-164 (262)
153 1jwy_B Dynamin A GTPase domain 99.6 5.6E-16 1.9E-20 148.8 11.5 115 231-350 131-261 (315)
154 3tr5_A RF-3, peptide chain rel 99.6 5.3E-16 1.8E-20 160.2 11.9 119 172-311 9-149 (528)
155 1h65_A Chloroplast outer envel 99.6 9.8E-16 3.4E-20 144.7 12.8 128 176-311 39-169 (270)
156 3c5h_A Glucocorticoid receptor 99.6 3.1E-16 1.1E-20 147.1 8.3 172 176-349 19-253 (255)
157 1kk1_A EIF2gamma; initiation o 99.6 2E-15 6.9E-20 151.1 14.0 165 175-351 9-200 (410)
158 3r7w_B Gtpase2, GTP-binding pr 99.6 1.1E-15 3.8E-20 148.3 11.4 156 178-351 1-174 (331)
159 3izy_P Translation initiation 99.6 5.1E-17 1.7E-21 167.7 1.8 155 176-350 4-167 (537)
160 2ged_A SR-beta, signal recogni 99.6 1.5E-15 5.2E-20 134.6 11.1 122 175-311 47-171 (193)
161 2ywe_A GTP-binding protein LEP 99.6 3.3E-15 1.1E-19 156.0 15.3 162 173-352 3-185 (600)
162 1s0u_A EIF-2-gamma, translatio 99.6 2.9E-15 9.9E-20 149.9 14.2 165 175-351 7-198 (408)
163 2c78_A Elongation factor TU-A; 99.6 3E-15 1E-19 149.6 13.2 155 175-350 10-211 (405)
164 3p26_A Elongation factor 1 alp 99.6 7E-16 2.4E-20 157.7 8.5 148 174-340 31-227 (483)
165 3cb4_D GTP-binding protein LEP 99.6 3.6E-15 1.2E-19 155.9 13.7 162 175-352 3-183 (599)
166 2j69_A Bacterial dynamin-like 99.6 3E-15 1E-19 159.4 12.2 167 173-349 66-323 (695)
167 3izq_1 HBS1P, elongation facto 99.6 3.8E-15 1.3E-19 156.4 12.4 149 174-341 165-362 (611)
168 2elf_A Protein translation elo 99.6 5.5E-15 1.9E-19 146.3 12.7 142 178-350 23-179 (370)
169 1d2e_A Elongation factor TU (E 99.6 1.2E-14 4.1E-19 145.0 14.4 155 176-351 3-195 (397)
170 1zun_B Sulfate adenylate trans 99.6 1.2E-14 4.2E-19 146.5 14.1 148 174-341 22-214 (434)
171 1pui_A ENGB, probable GTP-bind 99.5 5.4E-14 1.9E-18 126.3 13.8 162 172-350 22-198 (210)
172 1jny_A EF-1-alpha, elongation 99.5 1.5E-14 5E-19 146.0 10.8 146 175-340 5-202 (435)
173 1zo1_I IF2, translation initia 99.5 5.7E-16 2E-20 158.6 -0.3 152 176-348 4-164 (501)
174 3mca_A HBS1, elongation factor 99.5 8.4E-16 2.9E-20 160.8 0.3 155 174-349 175-395 (592)
175 2qpt_A EH domain-containing pr 99.5 4.8E-14 1.7E-18 146.3 13.2 132 175-313 64-235 (550)
176 1f60_A Elongation factor EEF1A 99.5 1.4E-14 4.7E-19 147.3 8.9 144 176-340 7-201 (458)
177 2x2e_A Dynamin-1; nitration, h 99.5 7.6E-15 2.6E-19 144.1 6.6 167 176-347 31-254 (353)
178 3t34_A Dynamin-related protein 99.5 1.4E-14 4.9E-19 142.4 7.8 134 174-311 32-218 (360)
179 1g7s_A Translation initiation 99.5 6E-14 2.1E-18 146.7 12.2 161 176-349 5-216 (594)
180 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 4.7E-14 1.6E-18 140.3 10.1 101 173-273 17-127 (392)
181 3avx_A Elongation factor TS, e 99.5 2.5E-13 8.5E-18 149.2 16.1 155 175-350 295-485 (1289)
182 1dar_A EF-G, elongation factor 99.5 1.4E-13 4.8E-18 146.5 13.5 117 174-311 10-144 (691)
183 1r5b_A Eukaryotic peptide chai 99.5 4.1E-14 1.4E-18 144.1 8.7 149 174-342 41-243 (467)
184 2h5e_A Peptide chain release f 99.5 3.9E-13 1.3E-17 138.8 15.2 130 172-322 9-162 (529)
185 2qag_A Septin-2, protein NEDD5 99.4 1.4E-13 4.7E-18 135.7 9.5 161 177-349 38-231 (361)
186 2xex_A Elongation factor G; GT 99.4 3.4E-13 1.2E-17 143.6 12.2 127 175-322 9-155 (693)
187 3zvr_A Dynamin-1; hydrolase, D 99.4 1.5E-13 5.3E-18 146.4 8.8 169 175-348 50-275 (772)
188 2www_A Methylmalonic aciduria 99.4 1.3E-13 4.5E-18 135.3 7.6 98 232-349 168-277 (349)
189 2rdo_7 EF-G, elongation factor 99.4 1.8E-12 6.3E-17 138.1 16.3 124 174-311 8-149 (704)
190 3p32_A Probable GTPase RV1496/ 99.4 4.2E-13 1.4E-17 131.9 10.6 100 231-350 172-283 (355)
191 2dy1_A Elongation factor G; tr 99.4 1.8E-12 6.1E-17 137.4 15.3 116 173-309 6-139 (665)
192 3vqt_A RF-3, peptide chain rel 99.4 8.1E-12 2.8E-16 129.5 16.5 132 169-321 24-179 (548)
193 2p67_A LAO/AO transport system 99.3 2.5E-12 8.7E-17 125.6 10.5 158 172-349 52-259 (341)
194 1n0u_A EF-2, elongation factor 99.3 1.6E-12 5.3E-17 141.2 9.0 121 174-309 17-163 (842)
195 3ec1_A YQEH GTPase; atnos1, at 99.3 3.1E-13 1E-17 133.6 0.3 119 176-311 162-289 (369)
196 2wsm_A Hydrogenase expression/ 99.3 7.5E-12 2.6E-16 113.4 9.2 159 173-351 27-214 (221)
197 1yrb_A ATP(GTP)binding protein 99.3 7.2E-12 2.5E-16 116.6 8.9 113 232-349 110-255 (262)
198 3h2y_A GTPase family protein; 99.2 2.1E-12 7.1E-17 127.6 2.9 120 176-312 160-289 (368)
199 2qm8_A GTPase/ATPase; G protei 99.2 3E-11 1E-15 117.9 11.0 161 169-349 48-259 (337)
200 2qnr_A Septin-2, protein NEDD5 99.2 3.9E-11 1.3E-15 115.2 11.5 161 177-350 19-213 (301)
201 3j25_A Tetracycline resistance 99.2 4.3E-11 1.5E-15 126.2 12.8 114 176-310 2-133 (638)
202 2qag_C Septin-7; cell cycle, c 99.2 1.8E-10 6E-15 115.6 14.7 165 177-350 32-226 (418)
203 4fn5_A EF-G 1, elongation fact 99.1 8.6E-10 2.9E-14 117.7 14.0 136 173-322 10-165 (709)
204 4fid_A G protein alpha subunit 99.0 5.2E-10 1.8E-14 109.1 9.7 71 232-310 162-242 (340)
205 2hf9_A Probable hydrogenase ni 98.9 1.5E-09 5.1E-14 98.4 7.5 155 174-349 36-222 (226)
206 1puj_A YLQF, conserved hypothe 98.8 8.5E-10 2.9E-14 105.0 2.2 59 176-245 120-179 (282)
207 3sop_A Neuronal-specific septi 98.8 1.9E-08 6.5E-13 95.0 10.9 140 177-328 3-175 (270)
208 1cip_A Protein (guanine nucleo 98.8 1.4E-09 4.9E-14 106.7 2.7 111 232-350 194-343 (353)
209 1u0l_A Probable GTPase ENGC; p 98.7 2.5E-08 8.7E-13 95.5 8.5 103 232-348 64-170 (301)
210 1zcb_A G alpha I/13; GTP-bindi 98.7 3.4E-09 1.2E-13 104.3 2.1 110 232-349 202-351 (362)
211 2qag_B Septin-6, protein NEDD5 98.7 4.8E-08 1.6E-12 97.9 10.0 140 169-322 33-201 (427)
212 1f5n_A Interferon-induced guan 98.7 3.2E-08 1.1E-12 103.1 8.2 101 175-281 37-140 (592)
213 2j37_W Signal recognition part 98.6 6.4E-08 2.2E-12 99.1 9.6 161 176-348 101-310 (504)
214 1azs_C GS-alpha; complex (lyas 98.6 2.5E-08 8.6E-13 99.3 5.6 110 232-349 218-383 (402)
215 3l82_B F-box only protein 4; T 98.6 5.7E-08 2E-12 88.1 6.9 116 232-350 97-222 (227)
216 1tq4_A IIGP1, interferon-induc 98.6 6.7E-07 2.3E-11 89.4 14.8 156 178-354 71-256 (413)
217 2xtz_A Guanine nucleotide-bind 98.6 2.1E-08 7.1E-13 98.4 3.7 110 232-349 184-343 (354)
218 3cnl_A YLQF, putative uncharac 98.5 7.2E-08 2.5E-12 90.6 5.2 58 177-245 100-158 (262)
219 3ohm_A Guanine nucleotide-bind 98.4 6.5E-08 2.2E-12 93.8 2.5 111 232-350 168-317 (327)
220 3l2o_B F-box only protein 4; s 98.3 4.7E-07 1.6E-11 85.9 6.3 100 249-350 198-307 (312)
221 1puj_A YLQF, conserved hypothe 98.3 2.1E-06 7.3E-11 81.4 8.9 100 235-349 3-104 (282)
222 2yv5_A YJEQ protein; hydrolase 98.2 2.8E-06 9.6E-11 81.3 9.1 86 257-347 75-165 (302)
223 3szr_A Interferon-induced GTP- 98.2 5.6E-06 1.9E-10 86.7 10.1 25 176-200 45-69 (608)
224 2v3c_C SRP54, signal recogniti 98.1 4.8E-06 1.6E-10 83.7 9.1 68 232-311 182-253 (432)
225 3dm5_A SRP54, signal recogniti 98.1 1.3E-05 4.4E-10 80.6 11.5 149 177-339 101-279 (443)
226 3ec1_A YQEH GTPase; atnos1, at 97.9 1E-05 3.5E-10 79.5 6.7 87 254-348 63-159 (369)
227 3h2y_A GTPase family protein; 97.9 1.2E-05 4.2E-10 79.0 6.2 86 254-347 61-156 (368)
228 3cnl_A YLQF, putative uncharac 97.8 1.7E-05 5.8E-10 74.3 5.7 94 238-348 4-98 (262)
229 3q5d_A Atlastin-1; G protein, 97.7 2.8E-05 9.5E-10 78.3 6.2 69 176-244 67-153 (447)
230 3kl4_A SRP54, signal recogniti 97.7 3.6E-05 1.2E-09 77.2 6.5 71 231-311 180-253 (433)
231 1j8m_F SRP54, signal recogniti 97.6 0.00021 7.2E-09 68.1 10.3 94 232-338 182-278 (297)
232 2px0_A Flagellar biosynthesis 97.3 0.0011 3.9E-08 62.9 10.1 93 231-337 183-277 (296)
233 4dzz_A Plasmid partitioning pr 97.2 0.00091 3.1E-08 58.8 8.5 67 232-309 77-143 (206)
234 1t9h_A YLOQ, probable GTPase E 97.2 0.00017 5.8E-09 69.1 3.7 29 172-200 169-197 (307)
235 3e70_C DPA, signal recognition 97.2 0.00034 1.2E-08 67.6 5.7 24 176-199 129-152 (328)
236 3ney_A 55 kDa erythrocyte memb 97.2 0.0001 3.4E-09 66.2 1.8 42 178-219 21-64 (197)
237 2xxa_A Signal recognition part 97.1 0.0021 7.1E-08 64.4 10.5 122 177-310 101-254 (433)
238 2yv5_A YJEQ protein; hydrolase 97.1 0.0011 3.6E-08 63.2 7.8 39 161-200 150-188 (302)
239 2rcn_A Probable GTPase ENGC; Y 97.1 0.00028 9.6E-09 69.0 3.8 57 176-243 215-280 (358)
240 2yhs_A FTSY, cell division pro 97.0 0.00046 1.6E-08 70.2 5.1 24 175-198 292-315 (503)
241 1vma_A Cell division protein F 96.9 0.0017 5.7E-08 62.1 7.7 23 176-198 104-126 (306)
242 1u0l_A Probable GTPase ENGC; p 96.9 0.0013 4.5E-08 62.5 6.6 42 159-200 152-193 (301)
243 1rj9_A FTSY, signal recognitio 96.8 0.004 1.4E-07 59.3 9.6 22 177-198 103-124 (304)
244 1t9h_A YLOQ, probable GTPase E 96.8 0.0011 3.8E-08 63.4 5.3 82 258-343 83-169 (307)
245 1zu4_A FTSY; GTPase, signal re 96.8 0.0035 1.2E-07 60.2 8.8 151 174-338 103-293 (320)
246 2rcn_A Probable GTPase ENGC; Y 96.5 0.0093 3.2E-07 58.2 9.7 81 259-345 128-213 (358)
247 3cwq_A Para family chromosome 96.5 0.021 7.3E-07 50.8 11.2 80 232-327 69-150 (209)
248 1kgd_A CASK, peripheral plasma 96.4 0.0015 5.1E-08 56.9 2.8 40 178-217 7-48 (180)
249 1ex7_A Guanylate kinase; subst 96.3 0.0017 5.7E-08 57.6 2.6 43 179-221 4-48 (186)
250 2ffh_A Protein (FFH); SRP54, s 96.2 0.019 6.6E-07 57.2 9.9 22 177-198 99-120 (425)
251 1ls1_A Signal recognition part 96.1 0.016 5.4E-07 54.9 8.7 22 177-198 99-120 (295)
252 1ye8_A Protein THEP1, hypothet 96.0 0.003 1E-07 55.3 3.0 23 178-200 2-24 (178)
253 1z6g_A Guanylate kinase; struc 95.9 0.0037 1.3E-07 56.3 2.8 33 169-201 16-48 (218)
254 3end_A Light-independent proto 95.8 0.032 1.1E-06 52.4 9.4 68 231-308 157-225 (307)
255 1lvg_A Guanylate kinase, GMP k 95.8 0.0042 1.4E-07 55.0 2.8 24 177-200 5-28 (198)
256 1zp6_A Hypothetical protein AT 95.8 0.0051 1.7E-07 53.4 3.3 22 178-199 11-32 (191)
257 3tr0_A Guanylate kinase, GMP k 95.7 0.0048 1.6E-07 54.1 2.9 25 177-201 8-32 (205)
258 1s96_A Guanylate kinase, GMP k 95.7 0.0044 1.5E-07 56.2 2.6 39 175-213 15-56 (219)
259 3tau_A Guanylate kinase, GMP k 95.7 0.0062 2.1E-07 54.3 3.4 39 178-216 10-50 (208)
260 1kag_A SKI, shikimate kinase I 95.6 0.0057 2E-07 52.2 2.8 23 177-199 5-27 (173)
261 2qor_A Guanylate kinase; phosp 95.6 0.0043 1.5E-07 54.9 2.0 37 178-214 14-52 (204)
262 1htw_A HI0065; nucleotide-bind 95.5 0.0064 2.2E-07 52.3 2.7 30 171-200 28-57 (158)
263 3a00_A Guanylate kinase, GMP k 95.4 0.0064 2.2E-07 53.1 2.7 23 179-201 4-26 (186)
264 2pcj_A ABC transporter, lipopr 95.4 0.0045 1.5E-07 56.2 1.7 31 170-200 24-54 (224)
265 2v9p_A Replication protein E1; 95.4 0.0075 2.6E-07 57.5 3.2 31 169-199 119-149 (305)
266 1znw_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 53.6 3.0 28 174-201 18-45 (207)
267 3vaa_A Shikimate kinase, SK; s 95.4 0.0078 2.7E-07 53.0 3.0 31 169-199 18-48 (199)
268 3tif_A Uncharacterized ABC tra 95.3 0.005 1.7E-07 56.3 1.6 31 170-200 25-55 (235)
269 1g6h_A High-affinity branched- 95.3 0.0055 1.9E-07 56.8 1.7 32 169-200 26-57 (257)
270 3c8u_A Fructokinase; YP_612366 95.2 0.007 2.4E-07 53.8 2.3 23 177-199 23-45 (208)
271 2j41_A Guanylate kinase; GMP, 95.2 0.009 3.1E-07 52.3 2.9 25 176-200 6-30 (207)
272 2cbz_A Multidrug resistance-as 95.2 0.0061 2.1E-07 55.8 1.6 31 170-200 25-55 (237)
273 4gp7_A Metallophosphoesterase; 95.1 0.0059 2E-07 52.7 1.4 22 176-197 9-30 (171)
274 2onk_A Molybdate/tungstate ABC 95.1 0.0064 2.2E-07 55.9 1.7 31 169-200 18-48 (240)
275 1sgw_A Putative ABC transporte 95.1 0.0058 2E-07 55.2 1.4 32 169-200 28-59 (214)
276 2pze_A Cystic fibrosis transme 95.1 0.0061 2.1E-07 55.5 1.6 31 170-200 28-58 (229)
277 1mv5_A LMRA, multidrug resista 95.1 0.0061 2.1E-07 56.0 1.5 31 170-200 22-52 (243)
278 1b0u_A Histidine permease; ABC 95.1 0.0062 2.1E-07 56.7 1.6 32 169-200 25-56 (262)
279 2bdt_A BH3686; alpha-beta prot 95.1 0.0098 3.3E-07 51.7 2.8 21 178-198 4-24 (189)
280 2ff7_A Alpha-hemolysin translo 95.1 0.0064 2.2E-07 56.1 1.6 32 169-200 28-59 (247)
281 4g1u_C Hemin import ATP-bindin 95.1 0.0065 2.2E-07 56.7 1.6 32 169-200 30-61 (266)
282 3gfo_A Cobalt import ATP-bindi 95.1 0.0065 2.2E-07 57.1 1.6 32 169-200 27-58 (275)
283 2olj_A Amino acid ABC transpor 95.0 0.0068 2.3E-07 56.5 1.6 31 170-200 44-74 (263)
284 3lnc_A Guanylate kinase, GMP k 95.0 0.0046 1.6E-07 55.8 0.5 29 172-200 23-52 (231)
285 1ji0_A ABC transporter; ATP bi 95.0 0.007 2.4E-07 55.5 1.6 31 170-200 26-56 (240)
286 2d2e_A SUFC protein; ABC-ATPas 95.0 0.0077 2.6E-07 55.6 1.8 30 170-199 23-52 (250)
287 1bif_A 6-phosphofructo-2-kinas 95.0 0.0069 2.4E-07 61.0 1.6 104 177-290 40-148 (469)
288 2jeo_A Uridine-cytidine kinase 95.0 0.011 3.8E-07 53.9 2.8 31 169-199 18-48 (245)
289 2zu0_C Probable ATP-dependent 95.0 0.008 2.7E-07 56.1 1.9 29 171-199 41-69 (267)
290 2qi9_C Vitamin B12 import ATP- 94.9 0.0074 2.5E-07 55.8 1.6 31 170-200 20-50 (249)
291 4eun_A Thermoresistant glucoki 94.9 0.012 4E-07 51.9 2.8 23 177-199 30-52 (200)
292 2ihy_A ABC transporter, ATP-bi 94.9 0.0075 2.6E-07 56.7 1.6 31 170-200 41-71 (279)
293 2ghi_A Transport protein; mult 94.9 0.0077 2.6E-07 56.0 1.6 32 169-200 39-70 (260)
294 1vpl_A ABC transporter, ATP-bi 94.9 0.0079 2.7E-07 55.8 1.6 32 169-200 34-65 (256)
295 3asz_A Uridine kinase; cytidin 94.9 0.013 4.4E-07 51.8 2.9 22 178-199 8-29 (211)
296 2ixe_A Antigen peptide transpo 94.9 0.0081 2.8E-07 56.2 1.6 30 171-200 40-69 (271)
297 1np6_A Molybdopterin-guanine d 94.9 0.013 4.6E-07 51.1 3.0 25 175-199 5-29 (174)
298 2if2_A Dephospho-COA kinase; a 94.8 0.015 5.1E-07 51.1 3.2 22 177-198 2-23 (204)
299 2nq2_C Hypothetical ABC transp 94.8 0.0087 3E-07 55.4 1.5 30 171-200 26-55 (253)
300 2yz2_A Putative ABC transporte 94.7 0.0095 3.3E-07 55.5 1.6 30 171-200 28-57 (266)
301 3kb2_A SPBC2 prophage-derived 94.7 0.017 6E-07 48.7 3.1 22 178-199 3-24 (173)
302 1knq_A Gluconate kinase; ALFA/ 94.7 0.015 5.3E-07 49.6 2.8 22 178-199 10-31 (175)
303 2gza_A Type IV secretion syste 94.6 0.02 7E-07 55.6 3.9 33 168-200 167-199 (361)
304 2pjz_A Hypothetical protein ST 94.6 0.01 3.4E-07 55.4 1.6 31 169-200 24-54 (263)
305 2bbw_A Adenylate kinase 4, AK4 94.6 0.017 5.7E-07 52.7 3.0 21 177-197 28-48 (246)
306 1cke_A CK, MSSA, protein (cyti 94.6 0.016 5.6E-07 51.6 2.9 23 177-199 6-28 (227)
307 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.019 6.6E-07 55.2 3.5 33 168-200 163-195 (330)
308 4a74_A DNA repair and recombin 94.6 0.017 5.8E-07 51.3 2.9 23 177-199 26-48 (231)
309 2i3b_A HCR-ntpase, human cance 94.5 0.017 5.8E-07 51.0 2.7 22 178-199 3-24 (189)
310 3nh6_A ATP-binding cassette SU 94.5 0.0083 2.8E-07 57.3 0.7 32 169-200 73-104 (306)
311 3b85_A Phosphate starvation-in 94.5 0.012 4.1E-07 52.8 1.7 27 173-199 19-45 (208)
312 3lw7_A Adenylate kinase relate 94.5 0.018 6.2E-07 48.4 2.8 19 178-196 3-21 (179)
313 2ehv_A Hypothetical protein PH 94.5 0.018 6.3E-07 51.8 2.9 23 175-197 29-51 (251)
314 3uie_A Adenylyl-sulfate kinase 94.4 0.019 6.4E-07 50.6 2.8 23 177-199 26-48 (200)
315 2bbs_A Cystic fibrosis transme 94.3 0.014 4.7E-07 55.2 1.8 30 171-200 59-88 (290)
316 2eyu_A Twitching motility prot 94.3 0.02 6.9E-07 53.2 2.8 25 175-199 24-48 (261)
317 1ly1_A Polynucleotide kinase; 94.3 0.023 7.7E-07 48.4 2.9 21 178-198 4-24 (181)
318 1lw7_A Transcriptional regulat 94.2 0.018 6.2E-07 55.8 2.6 32 169-200 161-194 (365)
319 3tui_C Methionine import ATP-b 94.2 0.015 5E-07 56.9 1.9 32 169-200 47-78 (366)
320 1nks_A Adenylate kinase; therm 94.2 0.026 8.8E-07 48.6 3.3 22 178-199 3-24 (194)
321 2f1r_A Molybdopterin-guanine d 94.2 0.014 4.9E-07 50.7 1.6 23 177-199 3-25 (171)
322 4ido_A Atlastin-1; GTPase, GTP 94.2 0.044 1.5E-06 55.0 5.3 23 175-197 66-88 (457)
323 3fvq_A Fe(3+) IONS import ATP- 94.2 0.016 5.5E-07 56.5 2.0 32 169-200 23-54 (359)
324 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.023 7.9E-07 57.2 3.2 32 169-200 131-162 (460)
325 3t61_A Gluconokinase; PSI-biol 94.2 0.022 7.6E-07 50.0 2.8 23 177-199 19-41 (202)
326 1jjv_A Dephospho-COA kinase; P 94.2 0.024 8.2E-07 49.8 3.0 21 178-198 4-24 (206)
327 1via_A Shikimate kinase; struc 94.2 0.025 8.5E-07 48.4 3.0 23 177-199 5-27 (175)
328 3cm0_A Adenylate kinase; ATP-b 94.2 0.025 8.5E-07 48.7 3.0 23 176-198 4-26 (186)
329 2jaq_A Deoxyguanosine kinase; 94.1 0.026 9.1E-07 49.0 3.0 22 178-199 2-23 (205)
330 1z47_A CYSA, putative ABC-tran 94.0 0.017 5.8E-07 56.3 1.8 32 169-200 34-65 (355)
331 2yyz_A Sugar ABC transporter, 94.0 0.017 5.9E-07 56.3 1.9 32 169-200 22-53 (359)
332 1qhx_A CPT, protein (chloramph 94.0 0.027 9.3E-07 48.1 2.9 22 178-199 5-26 (178)
333 3nwj_A ATSK2; P loop, shikimat 94.0 0.029 1E-06 51.8 3.3 30 169-198 38-70 (250)
334 3aez_A Pantothenate kinase; tr 94.0 0.024 8.2E-07 54.1 2.8 24 176-199 90-113 (312)
335 3ec2_A DNA replication protein 93.9 0.023 7.9E-07 48.9 2.3 24 176-199 38-61 (180)
336 2it1_A 362AA long hypothetical 93.9 0.019 6.4E-07 56.1 1.9 32 169-200 22-53 (362)
337 3rlf_A Maltose/maltodextrin im 93.9 0.019 6.5E-07 56.4 1.9 32 169-200 22-53 (381)
338 2oap_1 GSPE-2, type II secreti 93.8 0.036 1.2E-06 56.5 3.9 33 168-200 252-284 (511)
339 1v43_A Sugar-binding transport 93.8 0.02 6.7E-07 56.2 1.9 32 169-200 30-61 (372)
340 1g29_1 MALK, maltose transport 93.8 0.02 6.9E-07 56.1 1.8 32 169-200 22-53 (372)
341 3fb4_A Adenylate kinase; psych 93.7 0.034 1.2E-06 49.2 3.2 21 178-198 2-22 (216)
342 2qt1_A Nicotinamide riboside k 93.7 0.032 1.1E-06 49.2 2.8 24 176-199 21-44 (207)
343 1y63_A LMAJ004144AAA protein; 93.7 0.03 1E-06 48.6 2.6 24 176-199 10-33 (184)
344 2rhm_A Putative kinase; P-loop 93.7 0.033 1.1E-06 48.0 2.9 23 177-199 6-28 (193)
345 3gd7_A Fusion complex of cysti 93.7 0.023 7.7E-07 56.1 2.0 32 169-200 40-71 (390)
346 3dl0_A Adenylate kinase; phosp 93.7 0.036 1.2E-06 49.1 3.2 22 178-199 2-23 (216)
347 2bwj_A Adenylate kinase 5; pho 93.6 0.045 1.5E-06 47.4 3.7 27 173-199 9-35 (199)
348 3d31_A Sulfate/molybdate ABC t 93.6 0.017 5.9E-07 56.0 1.0 32 169-200 19-50 (348)
349 1kht_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 47.6 2.9 22 177-198 4-25 (192)
350 2v54_A DTMP kinase, thymidylat 93.6 0.034 1.1E-06 48.5 2.8 23 177-199 5-27 (204)
351 2c95_A Adenylate kinase 1; tra 93.6 0.045 1.5E-06 47.3 3.6 25 174-198 7-31 (196)
352 1nij_A Hypothetical protein YJ 93.5 0.025 8.7E-07 53.9 2.1 26 175-200 3-28 (318)
353 1sq5_A Pantothenate kinase; P- 93.5 0.043 1.5E-06 52.0 3.6 24 176-199 80-103 (308)
354 3trf_A Shikimate kinase, SK; a 93.5 0.042 1.4E-06 47.2 3.2 24 176-199 5-28 (185)
355 1oxx_K GLCV, glucose, ABC tran 93.4 0.016 5.4E-07 56.4 0.3 32 169-200 24-55 (353)
356 1aky_A Adenylate kinase; ATP:A 93.3 0.044 1.5E-06 48.8 3.1 24 176-199 4-27 (220)
357 2pt5_A Shikimate kinase, SK; a 93.3 0.046 1.6E-06 46.1 3.1 21 178-198 2-22 (168)
358 1e4v_A Adenylate kinase; trans 93.2 0.049 1.7E-06 48.3 3.3 21 178-198 2-22 (214)
359 1rz3_A Hypothetical protein rb 93.2 0.044 1.5E-06 48.3 2.9 22 177-198 23-44 (201)
360 2x8a_A Nuclear valosin-contain 93.2 0.04 1.4E-06 51.4 2.7 22 178-199 46-67 (274)
361 3b60_A Lipid A export ATP-bind 93.2 0.034 1.2E-06 57.5 2.5 32 169-200 362-393 (582)
362 3jvv_A Twitching mobility prot 93.2 0.04 1.4E-06 53.6 2.8 22 178-199 125-146 (356)
363 1xjc_A MOBB protein homolog; s 93.2 0.048 1.7E-06 47.4 3.1 24 176-199 4-27 (169)
364 1gtv_A TMK, thymidylate kinase 93.1 0.026 9E-07 49.6 1.3 22 178-199 2-23 (214)
365 1zd8_A GTP:AMP phosphotransfer 93.1 0.053 1.8E-06 48.5 3.4 24 176-199 7-30 (227)
366 2plr_A DTMP kinase, probable t 93.0 0.048 1.7E-06 47.6 2.9 23 177-199 5-27 (213)
367 4b4t_L 26S protease subunit RP 93.0 0.2 6.8E-06 50.0 7.7 23 177-199 216-238 (437)
368 3iij_A Coilin-interacting nucl 93.0 0.049 1.7E-06 46.7 2.9 24 176-199 11-34 (180)
369 2kjq_A DNAA-related protein; s 93.0 0.03 1E-06 47.3 1.4 23 177-199 37-59 (149)
370 2yvu_A Probable adenylyl-sulfa 93.0 0.047 1.6E-06 47.1 2.8 23 177-199 14-36 (186)
371 2pez_A Bifunctional 3'-phospho 92.9 0.049 1.7E-06 46.7 2.8 22 178-199 7-28 (179)
372 3n70_A Transport activator; si 92.9 0.25 8.5E-06 40.9 7.1 24 176-199 24-47 (145)
373 1nn5_A Similar to deoxythymidy 92.9 0.056 1.9E-06 47.4 3.2 23 176-198 9-31 (215)
374 4e22_A Cytidylate kinase; P-lo 92.9 0.05 1.7E-06 49.9 2.9 22 176-197 27-48 (252)
375 2wwf_A Thymidilate kinase, put 92.9 0.054 1.8E-06 47.5 3.0 22 177-198 11-32 (212)
376 1ixz_A ATP-dependent metallopr 92.9 0.048 1.6E-06 49.6 2.8 22 178-199 51-72 (254)
377 1tev_A UMP-CMP kinase; ploop, 92.9 0.054 1.8E-06 46.6 2.9 21 178-198 5-25 (196)
378 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.055 1.9E-06 49.8 3.1 23 176-198 4-26 (260)
379 1sxj_E Activator 1 40 kDa subu 92.8 0.27 9.1E-06 46.7 8.0 22 177-198 37-58 (354)
380 2obl_A ESCN; ATPase, hydrolase 92.8 0.044 1.5E-06 53.1 2.4 30 171-200 66-95 (347)
381 2iyv_A Shikimate kinase, SK; t 92.7 0.06 2.1E-06 46.2 3.0 22 177-198 3-24 (184)
382 1e6c_A Shikimate kinase; phosp 92.7 0.06 2E-06 45.6 2.9 23 177-199 3-25 (173)
383 3kta_A Chromosome segregation 92.7 0.062 2.1E-06 46.1 3.1 21 178-198 28-48 (182)
384 2w0m_A SSO2452; RECA, SSPF, un 92.7 0.054 1.9E-06 47.8 2.8 21 178-198 25-45 (235)
385 2pbr_A DTMP kinase, thymidylat 92.6 0.065 2.2E-06 46.0 3.2 21 178-198 2-22 (195)
386 2ewv_A Twitching motility prot 92.6 0.051 1.8E-06 53.1 2.7 25 175-199 135-159 (372)
387 1zak_A Adenylate kinase; ATP:A 92.6 0.062 2.1E-06 47.8 3.0 23 177-199 6-28 (222)
388 3be4_A Adenylate kinase; malar 92.6 0.078 2.7E-06 47.2 3.6 23 177-199 6-28 (217)
389 2z0h_A DTMP kinase, thymidylat 92.5 0.065 2.2E-06 46.3 2.9 22 178-199 2-23 (197)
390 2cdn_A Adenylate kinase; phosp 92.5 0.07 2.4E-06 46.6 3.2 22 178-199 22-43 (201)
391 1cr0_A DNA primase/helicase; R 92.4 0.062 2.1E-06 50.2 2.9 28 172-199 31-58 (296)
392 2yl4_A ATP-binding cassette SU 92.4 0.034 1.2E-06 57.7 1.2 32 169-200 363-394 (595)
393 1qf9_A UMP/CMP kinase, protein 92.4 0.071 2.4E-06 45.7 3.1 23 177-199 7-29 (194)
394 3tqc_A Pantothenate kinase; bi 92.4 0.059 2E-06 51.6 2.8 22 178-199 94-115 (321)
395 3b9q_A Chloroplast SRP recepto 92.4 0.044 1.5E-06 52.0 1.8 27 173-199 97-123 (302)
396 1in4_A RUVB, holliday junction 92.3 0.075 2.6E-06 50.8 3.4 23 177-199 52-74 (334)
397 3qf4_B Uncharacterized ABC tra 92.3 0.039 1.3E-06 57.3 1.5 32 169-200 374-405 (598)
398 1iy2_A ATP-dependent metallopr 92.3 0.064 2.2E-06 49.6 2.8 22 178-199 75-96 (278)
399 4a82_A Cystic fibrosis transme 92.2 0.033 1.1E-06 57.5 0.9 32 169-200 360-391 (578)
400 1p9r_A General secretion pathw 92.2 0.062 2.1E-06 53.4 2.8 22 178-199 169-190 (418)
401 3h4m_A Proteasome-activating n 92.2 0.2 6.8E-06 46.0 6.1 24 176-199 51-74 (285)
402 1uf9_A TT1252 protein; P-loop, 92.2 0.077 2.6E-06 46.0 3.0 23 177-199 9-31 (203)
403 2vp4_A Deoxynucleoside kinase; 92.2 0.051 1.8E-06 48.9 1.9 22 178-199 22-43 (230)
404 2xb4_A Adenylate kinase; ATP-b 92.2 0.079 2.7E-06 47.5 3.2 22 178-199 2-23 (223)
405 3b5x_A Lipid A export ATP-bind 92.2 0.049 1.7E-06 56.3 2.0 32 169-200 362-393 (582)
406 2qz4_A Paraplegin; AAA+, SPG7, 92.1 0.38 1.3E-05 43.3 7.8 23 177-199 40-62 (262)
407 1m7g_A Adenylylsulfate kinase; 92.1 0.08 2.7E-06 46.8 3.1 28 172-199 21-48 (211)
408 2dpy_A FLII, flagellum-specifi 92.1 0.062 2.1E-06 53.7 2.6 30 171-200 152-181 (438)
409 1ukz_A Uridylate kinase; trans 92.1 0.085 2.9E-06 46.0 3.2 23 177-199 16-38 (203)
410 3tlx_A Adenylate kinase 2; str 92.0 0.092 3.2E-06 47.8 3.5 24 175-198 28-51 (243)
411 3ozx_A RNAse L inhibitor; ATP 92.0 0.068 2.3E-06 54.9 2.8 23 178-200 27-49 (538)
412 1vht_A Dephospho-COA kinase; s 91.9 0.077 2.6E-06 47.0 2.8 22 177-198 5-26 (218)
413 3sr0_A Adenylate kinase; phosp 91.9 0.09 3.1E-06 47.0 3.2 22 178-199 2-23 (206)
414 2vli_A Antibiotic resistance p 91.9 0.056 1.9E-06 46.2 1.7 23 177-199 6-28 (183)
415 1yqt_A RNAse L inhibitor; ATP- 91.8 0.077 2.6E-06 54.4 3.0 27 174-200 45-71 (538)
416 1svm_A Large T antigen; AAA+ f 91.8 0.083 2.8E-06 51.8 3.1 27 173-199 166-192 (377)
417 2ze6_A Isopentenyl transferase 91.7 0.081 2.8E-06 48.6 2.8 22 178-199 3-24 (253)
418 1xwi_A SKD1 protein; VPS4B, AA 91.7 0.67 2.3E-05 43.9 9.3 23 177-199 46-68 (322)
419 1n0w_A DNA repair protein RAD5 91.6 0.086 3E-06 47.0 2.8 22 177-198 25-46 (243)
420 1zuh_A Shikimate kinase; alpha 91.6 0.096 3.3E-06 44.3 2.9 22 177-198 8-29 (168)
421 4b4t_H 26S protease regulatory 91.4 0.41 1.4E-05 48.1 7.7 23 177-199 244-266 (467)
422 2og2_A Putative signal recogni 91.4 0.065 2.2E-06 52.2 1.8 26 174-199 155-180 (359)
423 3euj_A Chromosome partition pr 91.4 0.059 2E-06 54.5 1.6 27 171-198 25-51 (483)
424 3j16_B RLI1P; ribosome recycli 91.4 0.09 3.1E-06 54.8 3.0 23 178-200 105-127 (608)
425 1gvn_B Zeta; postsegregational 91.4 0.081 2.8E-06 49.6 2.4 23 177-199 34-56 (287)
426 4b4t_K 26S protease regulatory 91.4 0.4 1.4E-05 47.7 7.6 21 179-199 209-229 (428)
427 2cvh_A DNA repair and recombin 91.4 0.096 3.3E-06 46.0 2.8 21 178-198 22-42 (220)
428 1odf_A YGR205W, hypothetical 3 91.3 0.094 3.2E-06 49.4 2.8 23 177-199 32-54 (290)
429 1ak2_A Adenylate kinase isoenz 91.3 0.11 3.9E-06 46.6 3.2 23 177-199 17-39 (233)
430 1jbk_A CLPB protein; beta barr 91.3 0.1 3.5E-06 44.0 2.8 23 177-199 44-66 (195)
431 1f2t_A RAD50 ABC-ATPase; DNA d 91.2 0.12 3.9E-06 43.6 2.9 19 179-197 26-44 (149)
432 4eaq_A DTMP kinase, thymidylat 90.9 0.1 3.6E-06 47.1 2.6 25 175-199 25-49 (229)
433 2p5t_B PEZT; postsegregational 90.8 0.07 2.4E-06 48.8 1.3 23 177-199 33-55 (253)
434 1yqt_A RNAse L inhibitor; ATP- 90.8 0.09 3.1E-06 53.9 2.2 27 175-201 311-337 (538)
435 3bk7_A ABC transporter ATP-bin 90.7 0.11 3.7E-06 54.2 2.8 24 177-200 118-141 (607)
436 3qf4_A ABC transporter, ATP-bi 90.6 0.056 1.9E-06 56.0 0.6 32 169-200 362-393 (587)
437 4b4t_J 26S protease regulatory 90.6 0.65 2.2E-05 45.8 8.1 23 177-199 183-205 (405)
438 3qf7_A RAD50; ABC-ATPase, ATPa 90.5 0.12 4.3E-06 50.1 2.9 19 179-197 26-44 (365)
439 1lv7_A FTSH; alpha/beta domain 90.5 0.12 4.3E-06 46.9 2.8 23 177-199 46-68 (257)
440 4b4t_I 26S protease regulatory 90.4 0.62 2.1E-05 46.4 7.8 23 177-199 217-239 (437)
441 4b4t_M 26S protease regulatory 90.4 0.48 1.6E-05 47.2 7.0 23 177-199 216-238 (434)
442 3ozx_A RNAse L inhibitor; ATP 90.3 0.097 3.3E-06 53.7 2.0 27 174-200 292-318 (538)
443 1ltq_A Polynucleotide kinase; 90.3 0.14 4.8E-06 47.6 2.9 21 178-198 4-24 (301)
444 2grj_A Dephospho-COA kinase; T 90.1 0.16 5.4E-06 44.8 2.9 23 177-199 13-35 (192)
445 3bk7_A ABC transporter ATP-bin 90.0 0.11 3.9E-06 54.0 2.2 27 175-201 381-407 (607)
446 1nlf_A Regulatory protein REPA 90.0 0.15 5.2E-06 47.1 2.9 24 175-198 29-52 (279)
447 1uj2_A Uridine-cytidine kinase 89.9 0.17 5.8E-06 46.1 3.1 22 177-198 23-44 (252)
448 4f4c_A Multidrug resistance pr 89.8 0.06 2.1E-06 61.1 -0.0 31 169-199 1098-1128(1321)
449 4f4c_A Multidrug resistance pr 89.8 0.13 4.3E-06 58.5 2.5 32 169-200 437-468 (1321)
450 3ake_A Cytidylate kinase; CMP 89.7 0.17 5.7E-06 44.0 2.8 21 178-198 4-24 (208)
451 3r20_A Cytidylate kinase; stru 89.6 0.19 6.6E-06 45.8 3.2 22 177-198 10-31 (233)
452 3bos_A Putative DNA replicatio 89.6 0.17 5.7E-06 44.7 2.8 24 176-199 52-75 (242)
453 2f6r_A COA synthase, bifunctio 89.6 0.18 6.2E-06 47.0 3.1 22 177-198 76-97 (281)
454 3j16_B RLI1P; ribosome recycli 89.5 0.17 5.6E-06 52.8 3.0 24 178-201 380-403 (608)
455 2w58_A DNAI, primosome compone 89.3 0.18 6.3E-06 43.8 2.8 23 177-199 55-77 (202)
456 3cr8_A Sulfate adenylyltranfer 89.3 0.15 5E-06 52.5 2.4 25 175-199 368-392 (552)
457 1tue_A Replication protein E1; 89.3 0.19 6.7E-06 45.1 2.9 27 173-199 52-81 (212)
458 1q3t_A Cytidylate kinase; nucl 89.2 0.2 6.7E-06 45.1 2.9 22 177-198 17-38 (236)
459 3gmt_A Adenylate kinase; ssgci 89.2 0.21 7.3E-06 45.5 3.2 22 177-198 9-30 (230)
460 1qhl_A Protein (cell division 89.2 0.041 1.4E-06 50.1 -1.7 21 179-199 30-50 (227)
461 3k9g_A PF-32 protein; ssgcid, 89.1 1.1 3.8E-05 40.6 8.1 64 232-308 146-209 (267)
462 2iw3_A Elongation factor 3A; a 89.1 0.08 2.7E-06 58.0 0.3 32 169-200 692-723 (986)
463 2p65_A Hypothetical protein PF 89.1 0.14 4.8E-06 43.1 1.8 24 176-199 43-66 (187)
464 4aby_A DNA repair protein RECN 89.0 0.056 1.9E-06 52.9 -0.9 27 170-197 55-81 (415)
465 3umf_A Adenylate kinase; rossm 88.9 0.23 7.8E-06 44.8 3.1 26 174-199 27-52 (217)
466 3te6_A Regulatory protein SIR3 88.9 0.44 1.5E-05 45.5 5.3 24 176-199 45-68 (318)
467 3g5u_A MCG1178, multidrug resi 88.9 0.13 4.6E-06 58.1 1.9 32 169-200 409-440 (1284)
468 2zan_A Vacuolar protein sortin 88.8 0.96 3.3E-05 44.9 8.0 23 177-199 168-190 (444)
469 3g5u_A MCG1178, multidrug resi 88.8 0.18 6.1E-06 57.1 2.8 32 169-200 1052-1083(1284)
470 2iw3_A Elongation factor 3A; a 88.7 0.13 4.5E-06 56.3 1.6 30 170-199 455-484 (986)
471 1njg_A DNA polymerase III subu 88.6 0.27 9.4E-06 42.8 3.5 22 178-199 47-68 (250)
472 3vfd_A Spastin; ATPase, microt 88.5 0.99 3.4E-05 43.7 7.7 23 177-199 149-171 (389)
473 2dr3_A UPF0273 protein PH0284; 88.5 0.25 8.5E-06 44.0 3.1 20 178-197 25-44 (247)
474 3qks_A DNA double-strand break 88.2 0.25 8.7E-06 43.6 2.9 19 179-197 26-44 (203)
475 3zvl_A Bifunctional polynucleo 88.1 0.23 7.8E-06 49.1 2.8 22 178-199 260-281 (416)
476 3ea0_A ATPase, para family; al 88.0 1.1 3.8E-05 39.8 7.2 67 232-310 120-186 (245)
477 3b9p_A CG5977-PA, isoform A; A 87.8 0.25 8.5E-06 45.7 2.7 23 177-199 55-77 (297)
478 2chg_A Replication factor C sm 87.7 0.27 9.3E-06 42.4 2.8 23 177-199 39-61 (226)
479 2ga8_A Hypothetical 39.9 kDa p 87.5 0.31 1.1E-05 47.3 3.2 22 177-198 25-46 (359)
480 1zcb_A G alpha I/13; GTP-bindi 87.5 0.27 9.3E-06 47.8 2.8 25 173-197 30-54 (362)
481 3ux8_A Excinuclease ABC, A sub 87.4 0.12 4E-06 54.4 0.2 29 169-197 341-369 (670)
482 1pzn_A RAD51, DNA repair and r 87.3 0.29 9.8E-06 47.2 2.9 27 173-199 128-154 (349)
483 2qby_A CDC6 homolog 1, cell di 87.2 0.3 1E-05 46.4 2.9 23 177-199 46-68 (386)
484 3pvs_A Replication-associated 87.1 1.4 4.6E-05 44.0 7.8 24 176-199 50-73 (447)
485 3cf0_A Transitional endoplasmi 86.8 0.31 1E-05 45.7 2.7 23 177-199 50-72 (301)
486 3t15_A Ribulose bisphosphate c 86.7 0.33 1.1E-05 45.3 2.9 22 178-199 38-59 (293)
487 1sxj_D Activator 1 41 kDa subu 86.7 0.43 1.5E-05 44.9 3.7 23 177-199 59-81 (353)
488 1sxj_C Activator 1 40 kDa subu 86.6 0.37 1.3E-05 45.8 3.2 24 176-199 46-69 (340)
489 2ius_A DNA translocase FTSK; n 86.4 0.28 9.4E-06 50.0 2.3 30 169-198 160-189 (512)
490 1tf7_A KAIC; homohexamer, hexa 86.4 0.3 1E-05 49.7 2.6 25 172-196 35-59 (525)
491 2qmh_A HPR kinase/phosphorylas 86.3 0.35 1.2E-05 43.2 2.7 24 177-200 35-58 (205)
492 1l8q_A Chromosomal replication 86.3 0.34 1.2E-05 45.6 2.7 23 177-199 38-60 (324)
493 2ocp_A DGK, deoxyguanosine kin 86.2 0.4 1.4E-05 43.1 3.1 22 178-199 4-25 (241)
494 1hyq_A MIND, cell division inh 86.1 1.4 4.7E-05 39.8 6.7 66 232-311 112-177 (263)
495 1p5z_B DCK, deoxycytidine kina 86.1 0.24 8.1E-06 45.3 1.5 25 175-199 23-47 (263)
496 1fnn_A CDC6P, cell division co 86.0 0.35 1.2E-05 46.1 2.8 22 178-199 46-67 (389)
497 1wcv_1 SOJ, segregation protei 85.9 2.1 7.1E-05 38.7 7.8 69 232-310 113-183 (257)
498 1g3q_A MIND ATPase, cell divis 85.8 1.2 4E-05 39.5 6.0 65 232-310 113-177 (237)
499 2h92_A Cytidylate kinase; ross 85.5 0.42 1.4E-05 42.0 2.8 22 178-199 5-26 (219)
500 3kjh_A CO dehydrogenase/acetyl 85.4 1.1 3.8E-05 39.7 5.6 62 232-307 133-194 (254)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=8.9e-70 Score=534.42 Aligned_cols=309 Identities=40% Similarity=0.652 Sum_probs=280.5
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
.+++|+|| ||+||+| ||||| |||+||||||++|++++||++|+++++|+|++|+||+ +++++
T Consensus 9 ~~~~g~gg~g~~~~~r~~~~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~------~~~~~ 78 (342)
T 1lnz_A 9 YVKGGDGGNGMVAFRREKYVPKGGPAGG----DGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHGM------SKNQH 78 (342)
T ss_dssp EEECCCCCCCCCCBCCCSSSCCCCBCCC----CCCCCCCEEEEECTTCCCSCGGGTCCEEECCCCCCCC------STTCC
T ss_pred EEEecCCCCceeeeehhhcccCCCCCCC----CCCCCCeEEEEeCCCcChHHHhCccceEEcCCCCCCC------CCCCc
Confidence 58999999 9999988 89999 9999999999999999999999999999999999986 57899
Q ss_pred CCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|+| +++++|+||++++|++++|+||.||+||++|.+.. +++|++++.|++
T Consensus 79 g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~-------------~~~p~~~~~g~~ 145 (342)
T 1lnz_A 79 GRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPA-------------NPAPQLSENGEP 145 (342)
T ss_dssp CCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTT-------------BSSCCCCCCCCC
T ss_pred CCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCcccccccc-------------ccccccccCCCC
Confidence 9999999999999999998 57999999999999999999999999998876532 246788999999
Q ss_pred ccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 164 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 164 ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
|+++++.+|||.+++|+|+|+||||||||||+|+++++.+++|+|||+.|+++.+..... ..++||||||+++
T Consensus 146 g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-------~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 146 GKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-------RSFVMADLPGLIE 218 (342)
T ss_dssp CCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-------CEEEEEEHHHHHH
T ss_pred cchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-------ceEEEecCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999876531 3799999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCC---CCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE 320 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~---~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~ 320 (384)
.++...++...|++|+++||++|||+|+++ .++++++..|..+|..|.+.+.++|+++|+||+|+....+..+.+.+
T Consensus 219 ~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~ 298 (342)
T 1lnz_A 219 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKE 298 (342)
T ss_dssp HTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHH
Confidence 888888999999999999999999999998 78889999999999999877788999999999999876655555555
Q ss_pred HHHh-cCCcccccccccCHHHHHHHHHhccCc
Q 016700 321 EILK-IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 321 ~~~~-~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.+.. ..+.++|+.++.++++++++|.+.+..
T Consensus 299 ~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 299 KLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 5433 356789999999999999999987754
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=1.4e-62 Score=494.09 Aligned_cols=306 Identities=41% Similarity=0.637 Sum_probs=275.4
Q ss_pred CeeccCCC-ceeeeec-------cCCCCCcCCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCC
Q 016700 13 KLAKENPW-KKSSFKR-------DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRG 84 (384)
Q Consensus 13 ~~~~~~~~-~~~~~~~-------g~~g~~~~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~ 84 (384)
++++|+|| ||+||+| ||||| |||+||||||++|++++||++| ++++|+|++|+||+ +++++
T Consensus 9 ~~~~g~gg~g~~~f~re~~~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~-~~~~~~a~~g~~g~------~~~~~ 77 (416)
T 1udx_A 9 TVAAGRGGDGAVSFRREKFVPKGGPDGG----DGGRGGSVYLRARGSVDSLSRL-SKRTYKAEDGEHGR------GSQQH 77 (416)
T ss_dssp EEECCCCCCCCCCBCCBTTBSCCCBCCC----CCCCCCCEEEEECTTCCSSTTS-CSSCEECCCCCCCB------TTTBC
T ss_pred EEEecCCCCceeeeeccccccCCCCCCC----CCCCCCeEEEEeCCCcCchhhh-hhceEEcCCCCCCC------CCCCc
Confidence 58999999 9999988 89999 9999999999999999999999 99999999999986 57899
Q ss_pred CCCCCCEEEecCCCcEEEc-cCCceeeccCCCCcEEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCcc
Q 016700 85 GLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 163 (384)
Q Consensus 85 g~~g~d~~i~vP~gt~v~~-~~~~~~~~l~~~~~~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (384)
|++|+|++|+||+||+|+| +++++|+||++++|++++|+||.||+||++|.+.+ +++|++++.|++
T Consensus 78 g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~-------------~~~p~~~~~g~~ 144 (416)
T 1udx_A 78 GRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPT-------------RQAPRFAEAGEE 144 (416)
T ss_dssp CCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSS-------------CSSCCEEECCCC
T ss_pred CCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeeccc-------------ccCcccccCCCC
Confidence 9999999999999999998 68999999999999999999999999998876532 357889999999
Q ss_pred ccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 164 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 164 ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
||++.+.|+|+.+++|+|+|+|||||||||++|++..+.+++|+|||+.|+.+.+..... ..++++||||+++
T Consensus 145 g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-------~~~~l~DtpGli~ 217 (416)
T 1udx_A 145 GEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-------ERFTLADIPGIIE 217 (416)
T ss_dssp CCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-------CEEEEEECCCCCC
T ss_pred ceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-------ceEEEEecccccc
Confidence 999999999999999999999999999999999999998999999999999999876531 3689999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL 323 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~ 323 (384)
.++...++...|++++++|+.+|+|+|++ ..+..++..+..++..|...+..+|.++|+||+|+... +.++.+.+.+.
T Consensus 218 ~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~ 295 (416)
T 1udx_A 218 GASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALA 295 (416)
T ss_dssp CGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHH
Confidence 88888888889999999999999999998 67788888888888888765667999999999999876 66667777666
Q ss_pred hcC--CcccccccccCHHHHHHHHHhccCc
Q 016700 324 KIG--CDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 324 ~~~--~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..+ +..+|+.++.+++++++.|.+.+..
T Consensus 296 ~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 296 REGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 543 5678999999999999999887654
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=2.3e-27 Score=242.55 Aligned_cols=282 Identities=19% Similarity=0.179 Sum_probs=190.0
Q ss_pred ceeeeeccCCCCCc---CCCCCCCCeEEEEecCCcCchhhccccceEEeecCCCCCCCCcCCccCCCCCCCCCEEEecCC
Q 016700 21 KKSSFKRDFDGSLI---LPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPL 97 (384)
Q Consensus 21 ~~~~~~~g~~g~~~---~~~Gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~~~~~~~g~~g~d~~i~vP~ 97 (384)
..+.|++||...++ ++-+||||.||++ ..+++|+++ ....|+.|+.++ +. ..+|+
T Consensus 92 ~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~--~~l~~l~~~---g~r~A~~Geft~------ra---f~nGk-------- 149 (482)
T 1xzp_A 92 VVVVFYKSPKSYTGEDMVEVMCHGGPLVVK--KLLDLFLKS---GARMAEPGEFTK------RA---FLNGK-------- 149 (482)
T ss_dssp EEEEEECTTSSSSSSCEEEEEECSCHHHHH--HHHHHHHTT---TCEECCTTHHHH------HH---HHTTS--------
T ss_pred EEEEEEeCCCcCCCCCEeeecCcCcHHHHH--HHHHHHHHc---CCEeCCCCCcCC------cC---CCcCC--------
Confidence 67888998887766 4469999999976 668888876 456688887643 22 33444
Q ss_pred CcEEEcc-CCceeeccCCCCc---EEEEecCCCCCCCCCCCcchhhcccccccccccccchhhhhccCccc-------cc
Q 016700 98 GTVVKHK-RGKLFSDLAHPGD---EVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHG-------EE 166 (384)
Q Consensus 98 gt~v~~~-~~~~~~~l~~~~~---~~~~a~GG~GG~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-------e~ 166 (384)
.|. +.+.++||..... ..+.++++.|+.+|.. .. .+..-..+... .+..+.+.+. .++ +.
T Consensus 150 ----~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~-~~-~r~~l~~~~~~--ie~~idf~ee-i~~~~~~i~~~~ 220 (482)
T 1xzp_A 150 ----MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFV-DS-LRRELIEVLAE--IRVELDYPDE-IETNTGEVVTRL 220 (482)
T ss_dssp ----SCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHH-HH-HHHHHHHHHHH--HHHHHHSTTT-CCCCHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHH-HH-HHHHHHHHHHH--hhhcCCCCcc-ccchHHHHHHHH
Confidence 143 3578899986653 3478899999988631 00 00000000000 0011222221 121 12
Q ss_pred hhhhHHhhhc-------------ceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCc
Q 016700 167 VSLELILRVV-------------ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSE 232 (384)
Q Consensus 167 ~~~~l~lk~~-------------~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~ 232 (384)
..+..+|+.+ ++|+|+|.||||||||+|+|++.+. .++++|+||.++....+.... ..
T Consensus 221 ~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--------~~ 292 (482)
T 1xzp_A 221 ERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--------IL 292 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--------EE
T ss_pred HHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--------eE
Confidence 3344455444 8999999999999999999999864 469999999999988887654 27
Q ss_pred eEEEeCCCCc-cccccccchh-HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 233 ATLADLPGLI-EGAHLGKGLG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 233 i~i~DtPG~~-~~a~~~~gl~-~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
+.||||||+. +....-+.++ ..++.+++.||++|+|+|++++.+.++.+.+ +.+ .++|+++|+||+|+..
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-------TTSSEEEEEEECSSCC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-------cCCCEEEEEECccccc
Confidence 9999999998 6654444443 2346789999999999999988777665433 333 2689999999999975
Q ss_pred hHHHHHHHHHHHHh-cCCcccccccccCHHHHHHHHHhccC
Q 016700 311 ARDRLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 311 ~~e~~~~l~~~~~~-~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
... .+++.+.+.. ..+.++|+.++.|+++++++|.+.+.
T Consensus 365 ~~~-~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 365 KIN-EEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp CCC-HHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred ccC-HHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 311 2333333221 24668999999999999999988653
No 4
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-23 Score=208.73 Aligned_cols=126 Identities=32% Similarity=0.531 Sum_probs=110.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
.-.++|+|||+||||||||+|+|+++++.+++|||||++|+.|.+.+.+. +++|+||||++++++.+++++.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--------~i~l~D~pGl~~~a~~~~~~g~ 141 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--------KIQMLDLPGIIDGAKDGRGRGK 141 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--------EEEEEECGGGCCC-----CHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--------EEEEEeCCCccCCchhhhHHHH
Confidence 34578999999999999999999999999999999999999999987653 7999999999999999999999
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.|+.+++.||++++|+|+++ +..+++.+..||..+...+.++|.++++||+|..
T Consensus 142 ~~l~~i~~ad~il~vvD~~~--p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 142 QVIAVARTCNLLFIILDVNK--PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHCSEEEEEEETTS--HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhcCccccccccCc--cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999999999999984 5778888999999988777789999999999964
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=4.7e-21 Score=185.21 Aligned_cols=163 Identities=28% Similarity=0.312 Sum_probs=124.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCC-CCCCccccCCceEEEeCCCCcccc---ccccchh
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGA---HLGKGLG 252 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~-~~~~~~~~~~~i~i~DtPG~~~~a---~~~~gl~ 252 (384)
.|+|+|.||||||||+|+|++.+..+ ++.+.||.....+.+... . .+++||||||+.+.. ..++.+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--------~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--------AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--------EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--------CeEEEEECcCCCccccchhHHHHHH
Confidence 49999999999999999999998765 889999998888877654 2 279999999997643 1223345
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-ChHHHHHHHHHHHHhc----CC
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-EARDRLQSLTEEILKI----GC 327 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~-~~~e~~~~l~~~~~~~----~~ 327 (384)
..+..++..+|++|+|+|+++....++...|...+.. .+.|+++|+||+|+. ......+.+.+....+ .+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 5667788999999999999988888777665666665 358999999999997 4333222222222223 35
Q ss_pred cccccccccCHHHHHHHHHhccCccc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGEAD 353 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~~~ 353 (384)
.++|+.++.|++++++.|...+.+..
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 68899999999999999999886543
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=170.04 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=120.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.||||||..+ +..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~ 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQER-------FRT 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GCT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE------EEEEEEEECCCcHh-------hhh
Confidence 34678999999999999999999987765555666666665555544321 12689999999744 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~ 330 (384)
.+..++..+|++|+|+|+++..+++....|+.++..+.. .+.|+++|+||+|+....+. .+...+....+ .+.++
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 456678899999999999998777888888888877653 36899999999999754321 12223333333 56688
Q ss_pred ccccccCHHHHHHHHHhccCc
Q 016700 331 TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~ 351 (384)
|+.++.++++++++|.+.+..
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887643
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=1.1e-20 Score=162.28 Aligned_cols=159 Identities=26% Similarity=0.295 Sum_probs=107.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
+++|+++|.+|||||||+++|.+.... ..+++.+|.+.....+.... ..+.+|||||+.+.......+...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 72 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--------GRFLLVDTGGLWSGDKWEKKIQEK 72 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--------EEEEEEECGGGCSSSSCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--------ceEEEEECCCCCCccchHHHHHHH
Confidence 368999999999999999999988754 46778888777766665443 268999999997643222334555
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCccccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 334 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t 334 (384)
+..++..+|++++|+|+++...... ..+...+.. .+.|+++|+||+|+...++..+++. .+....+.++|+++
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 73 VDRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp HHHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTT
T ss_pred HHHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEeccc
Confidence 6677899999999999998655433 233344443 3589999999999986543333322 11111456899999
Q ss_pred ccCHHHHHHHHHhcc
Q 016700 335 ELSSEDAVKSLSTEG 349 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~ 349 (384)
+.++++++++|.+.+
T Consensus 146 ~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 146 ARGLEELLEAIWERL 160 (161)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHhC
Confidence 999999999998754
No 8
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.84 E-value=1.1e-20 Score=163.49 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=110.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|.+.+......+.++.+.....+..... ...+.+|||||..+. ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK------KVKLQIWDTAGQERF-------RTIT 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC------EEEEEEECCTTGGGT-------SCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEeCCCChhh-------hhhH
Confidence 368999999999999999999987654444444444444444443321 126899999997543 2234
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCcccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa~ 333 (384)
..+++.+|++++|+|++++.+++....|+.++..+.. .+.|+++|+||+|+.......+...+.... +.+.++|+.
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 147 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECC
Confidence 5567889999999999987777777778777776542 368999999999995422112222233333 356688999
Q ss_pred cccCHHHHHHHHHhccC
Q 016700 334 TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~ 350 (384)
++.++++++++|...+.
T Consensus 148 ~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=3.2e-20 Score=178.93 Aligned_cols=162 Identities=24% Similarity=0.247 Sum_probs=117.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 255 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~f 255 (384)
.|+|+|.||||||||+|+|++.+..+ ++.|.||.+...+.+.... .+++||||||+.+... .++.+...+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--------~~l~l~DTpG~~~~~~~l~~~~~~~~ 80 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--------RQIVFVDTPGLHKPMDALGEFMDQEV 80 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--------EEEEEEECCCCCCCCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--------cEEEEecCccccchhhHHHHHHHHHH
Confidence 69999999999999999999988765 7788899877766654332 3799999999975321 122245556
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-HhcCCccccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGCDKVTSET 334 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~-~~~~~~~~sa~t 334 (384)
..+++.+|++|+|+|+++.....+ ..+++.+..+. .+.|+++|+||+|+....+...+..+.+ ....+.++|+.+
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTC
T ss_pred HHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCC
Confidence 778899999999999998655443 33445666542 2689999999999986544122222222 011235788999
Q ss_pred ccCHHHHHHHHHhccCc
Q 016700 335 ELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~~~ 351 (384)
+.+++++++.|...+.+
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999987654
No 10
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=1.9e-20 Score=165.03 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=113.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|++... ...++.|+.......+..... ...+.||||||+.+. ...+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 70 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRD 70 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTE------EEEEEEEECCCC----------CTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCc------EEEEEEEECCCcHHH-------HHHHH
Confidence 5899999999999999999997653 345556665444444433221 125788999997543 23344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa~t 334 (384)
.++..+|++++|+|+++..+++....+..++..+.. ..+.|+++|+||+|+.......+...+.... ..+.++|+.+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKT 149 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 567789999999999988777787778777776542 2468999999999997533222333333333 3566889999
Q ss_pred ccCHHHHHHHHHhccCc
Q 016700 335 ELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~~~ 351 (384)
+.|+++++++|.+.+..
T Consensus 150 g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 150 RQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887743
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=164.72 Aligned_cols=161 Identities=14% Similarity=0.043 Sum_probs=115.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.+|||||..+. ...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~ 74 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE------KVKLQIWDTAGQERF-------RTI 74 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE------EEEEEEEEETTGGGC-------SSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE------EEEEEEEcCCCchhh-------hhh
Confidence 4578999999999999999999987765555666666665555543321 126899999997543 223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~s 331 (384)
+..++..+|++++|+|++++.+++.+..|+.++.... .+.|+++|+||+|+...... .+...+.... ..+.++|
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 3456788999999999999877777777877777654 36899999999998753211 1222223333 3566899
Q ss_pred cccccCHHHHHHHHHhccCc
Q 016700 332 SETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~ 351 (384)
+.++.++++++++|.+.+..
T Consensus 152 a~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 152 AKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877643
No 12
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=168.04 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=110.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||..+ +...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~~ 91 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK------KIRLQIWDTAGQER-------FNSI 91 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCe------EEEEEEEeCCCcHH-------HHHH
Confidence 3468999999999999999999987654433344444444444433211 12689999999743 4455
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh---cCCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK---IGCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~---~~~~~~ 330 (384)
+..+++.+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+. .++..+.... ..+.++
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 66778899999999999998788887778778876643 36899999999998653221 1222233333 345688
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.++++++++|...+
T Consensus 170 SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 170 SAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 13
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=4e-20 Score=161.42 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=112.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.+|||||..+ +...+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH------FVTMQIWDTAGQER-------FRSLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE------EEEEEEEECCCCGG-------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCE------EEEEEEEeCCCchh-------hhhhH
Confidence 468999999999999999999987654333333333333333332210 12689999999743 34455
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV 330 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~---~~~~~~~ 330 (384)
..+++.+|++++|+|+++..+++....|..++..+.. ...+.|+++|+||+|+.......++..+... ...+.++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFET 153 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEE
Confidence 5678899999999999988777777777777765432 1246899999999999743222233333333 3456789
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++++|...+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 154 SAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987653
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=6e-20 Score=158.36 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=108.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.... ..+..|+.......+..... ...+.+|||||+.+. ...+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~ 69 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQ------QCMLEILDTAGTEQF-------TAMRD 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSC------EEEEEEEEECSSCSS-------TTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCE------EEEEEEEECCChHHH-------HHHHH
Confidence 57999999999999999999986532 23333333332223332211 126899999998543 23445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 332 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~sa 332 (384)
.++..+|++++|+|++++.+++....++.++..+.. ..+.|+++|+||+|+.... +....+.+.+....+.++|+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 567789999999999987777777777777665421 2468999999999996532 22233322222334668899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.|+++++++|.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 15
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=6.3e-20 Score=162.86 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=110.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCC-------------------------------
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL------------------------------- 224 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~------------------------------- 224 (384)
..+|+|+|.+|||||||+++|++........+.+..+.....+......
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999876432222222222222333322110
Q ss_pred CccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 016700 225 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 304 (384)
Q Consensus 225 ~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~N 304 (384)
........+.||||||+.+. ...+..+++.+|++|+|+|++++.+++.+..|+.++..+. ..|+++|+|
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~N 155 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERY-------ASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVAN 155 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGC-------TTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEE
T ss_pred cCccceeEEEEEECCCcHHH-------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEE
Confidence 00000036899999997542 3345667889999999999998877777777877777654 389999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcC--CcccccccccCHHHHHHHHHhcc
Q 016700 305 KIDLPEARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 305 K~Dl~~~~e~~~~l~~~~~~~~--~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
|+|+.......+++.+.+...+ +.++|+.++.++++++++|...+
T Consensus 156 K~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9994322222344555555554 45789999999999999998765
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=7.8e-20 Score=160.16 Aligned_cols=161 Identities=15% Similarity=0.057 Sum_probs=112.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.||||||+.+ +...+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND------ATVKFEIWDTAGQER-------YHSLA 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT------EEEEEEEEECCCSGG-------GGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC------EEEEEEEEeCCCChh-------hhhhh
Confidence 36899999999999999999998765433222222222222222211 012689999999754 33345
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa 332 (384)
..+++.+|++|+|+|++++.+++....|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++|+
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 5668889999999999987777777778777776542 3689999999999965322 1233444444444 568899
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.++++++++|+..+..
T Consensus 157 ~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 157 KTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SSCTTHHHHHHHHHHTCC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987744
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.82 E-value=2.3e-20 Score=161.29 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=98.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+|+|.+|||||||+++|++..... .+.+++|..... .+... ...+.+|||||+.+. ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~i~D~~g~~~~-------~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGE--------EASLMVYDIWEQDGG-------RWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTE--------EEEEEEEECC---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCE--------EEEEEEEECCCCccc-------hhh
Confidence 4689999999999999999999876533 455666654322 22211 126899999998542 333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~s 331 (384)
+..++..+|++++|+|++++.+++....++.++..+.. ..+.|+++|+||+|+....+. .+...+..... .+.++|
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS 144 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence 44567889999999999998888888888877776432 246899999999999754221 12222223333 456889
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
+.++.++++++++|...+
T Consensus 145 a~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=7.7e-20 Score=158.13 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=111.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc--cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i--a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
..+|+++|.+|||||||+++|.+..... .+..+++.......+... ...+.+|||||+.+ +..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dt~G~~~-------~~~ 70 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE--------LHKFLIWDTAGLER-------FRA 70 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------EEEEEEEEECCSGG-------GGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe--------EEEEEEEcCCCchh-------hhc
Confidence 3689999999999999999999876322 333333433322222211 12689999999843 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~ 330 (384)
.+..++..+|++++|+|++++.+++....|..++..+.. ...|+++|+||+|+....+. .+...+..... .+.++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 445667889999999999988777777778888877643 46899999999999753221 22233333333 35578
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++++|.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999987653
No 19
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=169.42 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=107.8
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
.....+|+|+|.+|||||||+++|++.. ....++.|+.+.....+..+.. ...+.||||||+.+..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~------- 82 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGR------PVRLQLCDTAGQDEFD------- 82 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTE------EEEEEEEECCCSTTCS-------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCE------EEEEEEEECCCCHHHH-------
Confidence 3456799999999999999999999765 3345555554444333332211 1257899999986532
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----------------HHH
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRL 315 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----------------e~~ 315 (384)
..+..++..+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+.... +..
T Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 12334678899999999999887777775 67777776643 68999999999997532 122
Q ss_pred HHHHHHHHhcCCcccccccccCHHHHHHHHHhccC
Q 016700 316 QSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 316 ~~l~~~~~~~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+.+.+....+.++|+.++.++++++++|...+.
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 22222222224568999999999999999987664
No 20
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=3e-20 Score=167.54 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=113.9
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
.....+|+|+|.+|||||||+++|++.+......+.++.+.....+..... ...+.||||||+.+. .
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~ 83 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK------KVKLQLWDTAGQERF-------R 83 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTE------EEEEEEECCTTGGGG-------T
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------H
Confidence 345679999999999999999999987654444444444444444433220 126899999997543 2
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKV 330 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~ 330 (384)
..+..++..+|++|+|+|++++.+++.+..|+.++..+.. ...|+++|+||+|+.......+...+.... +.+.++
T Consensus 84 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (213)
T 3cph_A 84 TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIES 161 (213)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEE
Confidence 2345667899999999999987777777778777776543 368999999999995322112222222232 356688
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
++.++.++++++++|...+.
T Consensus 162 Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 162 SAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp BTTTTBSSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987664
No 21
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=4.9e-20 Score=163.40 Aligned_cols=162 Identities=16% Similarity=0.048 Sum_probs=113.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||+.+. ...+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN------KAKLAIWDTAGQERF-------RTLT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE------EEEEEEEEECSSGGG-------CCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCe------EEEEEEEeCCCchhh-------hhhh
Confidence 468999999999999999999987644333333233333333332211 126899999998542 3335
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Ccccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSE 333 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~--~~~~sa~ 333 (384)
..+++.+|++|+|+|++++.+++.+..|+.++..+.. ....|+++|+||+|+.......++..+.....+ +.++++.
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 5678899999999999987777777777777766532 236899999999999643222233334444444 4578999
Q ss_pred cccCHHHHHHHHHhccCc
Q 016700 334 TELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~~ 351 (384)
++.++++++++|...+..
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887643
No 22
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.82 E-value=5.2e-21 Score=168.45 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=113.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh-H
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-R 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~-~ 253 (384)
..+|+|+|.+|||||||+++|++.... +.+++++|.+...+.+..+. ..+.+|||||+.+....-+.+. .
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 75 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--------MPLHIIDTAGLREASDEVERIGIE 75 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--------EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--------eEEEEEECCCcccchhHHHHHHHH
Confidence 357999999999999999999987654 57889999877777765543 2589999999965321111111 1
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcccccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 333 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~ 333 (384)
....+++.+|++++|+|+++..+++. ..|+.++..... .+.|+++|+||+|+...... +.+ .....+.++|++
T Consensus 76 ~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~---~~~-~~~~~~~~~SA~ 148 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP--AKLPITVVRNKADITGETLG---MSE-VNGHALIRLSAR 148 (172)
T ss_dssp HHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCE---EEE-ETTEEEEECCTT
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc--cCCCEEEEEECccCCcchhh---hhh-ccCCceEEEeCC
Confidence 12356889999999999998777654 345566655432 36899999999998542110 000 012345689999
Q ss_pred cccCHHHHHHHHHhccC
Q 016700 334 TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~ 350 (384)
++.++++++++|.+.+.
T Consensus 149 ~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TCTTHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999987663
No 23
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=4.8e-20 Score=161.22 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=108.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+.++.+.....+..... ....+.+|||||..+ +...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~-------~~~~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD-----KVATMQVWDTAGQER-------FQSL 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSS-----CCEEEEEECCC---------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCC-----cEEEEEEEECCCChH-------hhhh
Confidence 3568999999999999999999987644333343344444445543311 113689999999743 3334
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCh-----HHHHHHHHHHHHhcCC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA-----RDRLQSLTEEILKIGC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~-----~e~~~~l~~~~~~~~~ 327 (384)
+..+++.+|++|+|+|+++..+++....|+.++..+.. ...+.|+++|+||+|+... .+....+.+......+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 55678899999999999988777777777777765431 1246899999999999543 2223333332233456
Q ss_pred cccccccccCHHHHHHHHHhcc
Q 016700 328 DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.++|+.++.++++++++|...+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=6.9e-20 Score=159.77 Aligned_cols=159 Identities=17% Similarity=0.075 Sum_probs=111.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+.++.+.....+.... ....+.+|||||..+ +...+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~~ 81 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG------QKIKLQIWDTAGQER-------FRAVT 81 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT------EEEEEEEEECTTGGG-------TCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC------eEEEEEEEECCCChH-------hhhhH
Confidence 56899999999999999999998764322112111121222222211 012689999999743 34456
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa 332 (384)
..+++.+|++++|+|+++..+++....|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++|+
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA 159 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 6778899999999999988777777788877776543 3689999999999964321 1233444444444 557899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.++++++++|...+
T Consensus 160 ~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=8.3e-20 Score=157.70 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=109.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCcc--CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia--~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.+|+|+|.+|||||||+++|++...... +...++.......+... ...+.+|||||+.+ +...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~G~~~-------~~~~ 71 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--------TVKFEIWDTAGQER-------YHSL 71 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------EEEEEEEEECCSGG-------GGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE--------EEEEEEEeCCCcHH-------hhhh
Confidence 5899999999999999999997654321 22222222222222111 12689999999854 3444
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Ccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~s 331 (384)
+..++..+|++++|+|++++.+++....|+.++..+.. ...|+++|+||+|+....+ ..++..+.....+ +.++|
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 56678899999999999987777777777777776532 3689999999999864321 1233334444444 45789
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.++++++++|++.+.
T Consensus 150 a~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987764
No 26
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=3.6e-20 Score=170.24 Aligned_cols=165 Identities=18% Similarity=0.277 Sum_probs=111.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc-h-hH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-L-GR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g-l-~~ 253 (384)
..+|+|+|.+|||||||+++|++......+++++|.......+.... ..+.||||||+.+....... + ..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--------NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--------EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--------CeEEEEECCCCcCcccchhhhHHHH
Confidence 46899999999999999999998876667788888877776655432 27899999999654322221 1 12
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHh--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHh---
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILK--- 324 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e----~~~~l~~~~~~--- 324 (384)
.+...+..+|++|+|+|+++..+++ ....+...+... ..+.|+++|+||+|+....+ ..+.+.+....
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 2233467789999999999876643 223444555442 23689999999999975422 12233333343
Q ss_pred -cCCcccccccccCHHHHHHHHHhccCc
Q 016700 325 -IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 325 -~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..+.++|+.++.|+++++++|+..+..
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 346689999999999999999987643
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=7.3e-20 Score=158.05 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=110.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+........+..+.+.....+..... ...+.+|||||..+ +...+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~-------~~~~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH------TVKFEIWDTAGQER-------FASLAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCChh-------hhhhhh
Confidence 57999999999999999999987644333333333332333322210 12689999999754 334456
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh---HHH-HHHHHHHHHh--cCCccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDR-LQSLTEEILK--IGCDKV 330 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~---~e~-~~~l~~~~~~--~~~~~~ 330 (384)
.+++.+|++++|+|++++.+++....|+.++..+.. .+.|+++|+||+|+... .+. .+...+.... ..+.++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET 148 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 778899999999999988777777777777776542 46899999999998643 111 1222222333 345688
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.++++++++|.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 149 SAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHTTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=8.9e-20 Score=162.69 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=115.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC--ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~--ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
...+|+|+|.+|||||||+++|++.... ..+..++|.......+... ...+.||||||..+ +.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~~ 86 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE--------LHKFLIWDTAGQER-------FH 86 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS--------EEEEEEEEECCSGG-------GG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE--------EEEEEEEcCCCchh-------hH
Confidence 4578999999999999999999987632 2344444433322222111 12689999999744 33
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Ccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDK 329 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~ 329 (384)
..+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.+
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 3455678899999999999998888888888888877652 3689999999999964221 1334444445554 457
Q ss_pred cccccccCHHHHHHHHHhccCc
Q 016700 330 VTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+|+.++.++++++++|.+.+..
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC-
T ss_pred EeCCCCcCHHHHHHHHHHHHHh
Confidence 8999999999999999987643
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.82 E-value=6.2e-20 Score=161.74 Aligned_cols=161 Identities=15% Similarity=0.044 Sum_probs=117.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.+|||||+.+ +...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~ 75 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK------YVKLQIWDTAGQER-------FRSV 75 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEeCCCcHH-------HHHH
Confidence 3578999999999999999999987665545555555444444433221 12689999999743 4455
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Ccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~s 331 (384)
+..++..+|++++|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++|
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 153 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence 67788999999999999998777777778777776543 4689999999999964321 1223333444444 55789
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.+++++++++...+.
T Consensus 154 a~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 30
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=4.5e-20 Score=160.95 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=113.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.+|||||..+ +...+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~-------~~~~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR------TVRLQLWDTAGQER-------FRSLIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GGGGSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCe------EEEEEEEECCCcHH-------HHHHHH
Confidence 58999999999999999999977655444455555554444433221 12689999999754 233445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa~ 333 (384)
.++..+|++++|+|++++.+++....|+.++..+.. .+.|+++|+||+|+....+. .++..+..... .+.++|+.
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 667889999999999987777777777777765432 36899999999998643211 12223333333 45688999
Q ss_pred cccCHHHHHHHHHhccC
Q 016700 334 TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~ 350 (384)
++.++++++++|.+.+.
T Consensus 160 ~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTBSHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987663
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.8e-20 Score=159.40 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=109.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccC-CCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~-~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+|+|.+|||||||+++|++....... .+.++.+.....+..... ...+.+|||||..+ +...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~-------~~~~ 76 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV------KVKLQMWDTAGQER-------FRSV 76 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE------EEEEEEEECCCC-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE------EEEEEEEeCCCcHH-------HHHH
Confidence 468999999999999999999987754322 333333333333222210 12689999999744 3344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~ 330 (384)
+..+++.+|++++|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+.... +..+.+.+.. .+.+.++
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFMET 153 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEEC
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEEE
Confidence 56678899999999999988777777778888776643 468999999999997532 2223332222 2456688
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++++|...+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.82 E-value=1.1e-20 Score=165.18 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=110.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........|.++.+.....+..... ....+.+|||||..+. ...+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~~Dt~G~~~~-------~~~~ 73 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN-----LNVTLQIWDIGGQTIG-------GKML 73 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT-----EEEEEEEEECTTCCTT-------CTTH
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCCccc-------cchh
Confidence 368999999999999999999976533211122222333333332210 0127899999998542 3345
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~s 331 (384)
..+++.+|++++|+|++++.+++.+..|+.++..+.......| +++|+||+|+....+. .++..+.... +.+.++|
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVS 153 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEe
Confidence 5668899999999999988777777778777776532112456 8999999999643211 1222233333 3456889
Q ss_pred cccccCHHHHHHHHHhccCc
Q 016700 332 SETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~ 351 (384)
+.++.++++++++|+..+..
T Consensus 154 a~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 154 AKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp TTTCTTHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987644
No 33
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=165.62 Aligned_cols=163 Identities=15% Similarity=0.085 Sum_probs=113.0
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
.....+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||..+ +.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~ 92 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK------RVKLQIWDTAGQER-------FR 92 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE------EEEEEEECCTTCGG-------GH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE------EEEEEEEECCCcHh-------HH
Confidence 355679999999999999999999987643222222122222333332210 12689999999843 44
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcCC---c
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC---D 328 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~~---~ 328 (384)
..+..+++.+|++|+|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....++ .
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence 4566778999999999999988778887788888876642 4689999999999975321 12334444444544 6
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|++++.++++++++|...+.
T Consensus 171 ~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 171 ETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999987663
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=157.79 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+|+|.+|||||||+++|++..... .+.+++|.......+... ...+.+|||||+.... ....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~g~~~~~-----~~~~ 70 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGE--------DTTLVVVDTWEAEKLD-----KSWS 70 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTE--------EEEEEEECCC------------CHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCE--------EEEEEEEecCCCCccc-----hhhh
Confidence 3689999999999999999999876443 333333332222222211 1268999999985420 1122
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~s 331 (384)
...++..+|++++|+|++++.+++....|+.++..+.. ..+.|+++|+||+|+....+. .++....... ..+.++|
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (175)
T 2nzj_A 71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETS 149 (175)
T ss_dssp HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence 23456789999999999988888887778777776531 236899999999999753221 1222222223 3466899
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
+.++.|+++++++|...+
T Consensus 150 a~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 35
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=4.6e-20 Score=188.34 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=98.5
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
++...+|+|+|.||||||||+|+|++.+.. ++++++||.+.....+.... ..+.||||||+.+....-+.+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--------~~l~liDT~G~~~~~~~ve~~ 301 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--------TMFRLTDTAGLREAGEEIEHE 301 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--------EEEEEEC--------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--------eEEEEEECCCCCcchhHHHHH
Confidence 345678999999999999999999998654 58899999998887776653 279999999997643221211
Q ss_pred h-HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHhcCCcc
Q 016700 252 G-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIGCDK 329 (384)
Q Consensus 252 ~-~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-~~l~~~~~~~~~~~ 329 (384)
+ ...+.+++.||++|||+|++++.+.+....+...+... .++|+++|+||+|+....... +.+.+. ....+.+
T Consensus 302 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i~ 376 (476)
T 3gee_A 302 GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALIRAIADG-TGTEVIG 376 (476)
T ss_dssp ------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEEE
T ss_pred HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhHHHHHhc-CCCceEE
Confidence 1 23456789999999999999988776444444444433 268999999999998654321 112221 1145678
Q ss_pred cccccccCHHHHHHHHHhccC
Q 016700 330 VTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+|++++.|+++++++|.+.+.
T Consensus 377 vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 36
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=9.1e-20 Score=158.89 Aligned_cols=155 Identities=22% Similarity=0.376 Sum_probs=105.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~~ 254 (384)
.+|+|+|.+|||||||+++|++....+..+|++|.+...+.+.... ..+.+|||||+.+.... .+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--------EEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--------cEEEEEECCCcccCCCcchhHHHHHH
Confidence 5799999999999999999998876677888888888877776442 26899999998753211 1122233
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~~~~~~s 331 (384)
+++. ..+|++++|+|+++. +....|..++.. .+.|+++|+||+|+..... ..+.+.+.+ ...+.++|
T Consensus 76 ~~~~-~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 145 (165)
T 2wji_A 76 YIIN-EKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 145 (165)
T ss_dssp HHHH-HCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHhc-CCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHh-CCCEEEEE
Confidence 3221 379999999999863 333445555554 2589999999999853211 123333332 24567899
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
++++.++++++++|+..+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998654
No 37
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=9.7e-20 Score=164.78 Aligned_cols=162 Identities=16% Similarity=0.091 Sum_probs=115.7
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
....+|+|+|.+|||||||+++|++........+..+.+.....+..+.. ...+.||||||... +..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~ 90 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE------KVKLQIWDTAGQER-------FRS 90 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCcHH-------HHH
Confidence 34578999999999999999999987654444444444443334433221 12689999999743 444
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHH--hcCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~--~~~~~~~ 330 (384)
.+..+++.+|++|+|+|+++..+++.+..|+.++..+.. ...|+++|+||+|+....+. .++..+... ...+.++
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 168 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 556778999999999999988777777888888877643 46899999999999643211 122222222 2456689
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++++|...+.
T Consensus 169 Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 169 SAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.81 E-value=7.8e-20 Score=157.32 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=110.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+... ...++.|+.......+..... ...+.+|||||..+ +...+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~D~~G~~~-------~~~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQED-------YAAIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCC----------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCE------EEEEEEEECCCcch-------hHHHHH
Confidence 5899999999999999999998763 234444544443333332211 12689999999743 344556
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~sa~ 333 (384)
.++..+|++++|+|++++.+++....|..++..+.. ..+.|+++|+||+|+....+ ..++..+..... .+.++|+.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCC
Confidence 677889999999999988777777777777766542 23689999999999865321 123333344433 45688999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.++++++++|...+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 39
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=163.72 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=116.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|.+... ...++.|+.......+..... ...+.||||||+.+ +...+
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~~ 79 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQED-------YAAIR 79 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTC-------CHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCE------EEEEEEEcCCChhh-------hHHHH
Confidence 46899999999999999999998763 345556655444444433221 12689999999744 34445
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~sa 332 (384)
..++..+|++++|+|+++..+++....|+.++..+.. ..+.|+++|+||+|+....+ ..++..+..... .+.++|+
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 158 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence 5667889999999999988777777778777776542 23689999999999975321 123333444433 4568899
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.|+++++++|...+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 40
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.81 E-value=3e-21 Score=192.93 Aligned_cols=166 Identities=34% Similarity=0.587 Sum_probs=96.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCC----C-CCCc----------ccc-CCceEEEeCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD----P-TLGA----------EKY-SSEATLADLPG 240 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~----~-~~~~----------~~~-~~~i~i~DtPG 240 (384)
.+|+|+|.||||||||+|+|++.+..++++||||++|+.+.+... . .+.. ... ...+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 379999999999999999999988666899999999999874311 0 0000 000 12589999999
Q ss_pred CccccccccchhHHHHHHcccCCeEEEEeeCCCC-----------CCHhHHHHHHHHHHhcC------------------
Q 016700 241 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMYN------------------ 291 (384)
Q Consensus 241 ~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~-----------~~~~~~~~l~~eL~~~~------------------ 291 (384)
+.++++..++++..|+.+++.||++++|+|+++. ++.++++.+..||..+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~ 160 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 9988888888888888999999999999999886 67777766666665330
Q ss_pred ------------------------------C-------------------CCCCCCEEEEEeCCCCCChHHHHHHHHHHH
Q 016700 292 ------------------------------P-------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 322 (384)
Q Consensus 292 ------------------------------~-------------------~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~ 322 (384)
. .+..+|+++|+||+|+. ..+.++.+.+.+
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~~l~~~~ 239 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIKRLVREE 239 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHHHHHHHH
Confidence 0 01249999999999988 445566666655
Q ss_pred HhcC--CcccccccccCHHHHHH
Q 016700 323 LKIG--CDKVTSETELSSEDAVK 343 (384)
Q Consensus 323 ~~~~--~~~~sa~t~~gv~e~l~ 343 (384)
...+ +.++|+..+.++.++++
T Consensus 240 ~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 240 EKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHTTCEEEEECHHHHHHHHSCSS
T ss_pred hhcCCcEEEEeccchhhHHHHHh
Confidence 5333 45677777777665443
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=1.2e-19 Score=165.06 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=115.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC-C-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc-----
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK-P-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----- 248 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~-~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~----- 248 (384)
.++|+|+|.+|||||||+|+|++.+ . .+.+++++|.......+.... ...+.||||||+.+.....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHHH
Confidence 4689999999999999999999886 2 457888888877666654211 1379999999986532111
Q ss_pred -cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHh
Q 016700 249 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK 324 (384)
Q Consensus 249 -~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~ 324 (384)
..+...+++....+|+++||+|+++.....+ ..+...+.. .+.|+++|+||+|+....+ ..+.+.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 1123344555556889999999987655443 334455554 3589999999999987544 23344444444
Q ss_pred c---------CCcccccccccCHHHHHHHHHhccCc
Q 016700 325 I---------GCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 325 ~---------~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
. .+.++|+.++.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 2 35688999999999999999887744
No 42
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=8.9e-20 Score=162.09 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=111.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.......+. +|.......+.... ..+.||||||+.+ +...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~~ 83 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSS--------LSFTVFDMSGQGR-------YRNL 83 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSS--------CEEEEEEECCSTT-------TGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECC--------EEEEEEECCCCHH-------HHHH
Confidence 346899999999999999999998763333332 34444555555442 2799999999754 3344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEARDRLQSLTEEIL-------KI 325 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l--~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~ 325 (384)
+..++..+|++|+|+|+++..+++....++.++.... .. .+.|+++|+||+|+..... .+++.+.+. .+
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCce
Confidence 5567889999999999998776777666666665432 11 3689999999999975422 233443332 12
Q ss_pred CCcccccccccCHHHHHHHHHhccC
Q 016700 326 GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 326 ~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.+.++|+.++.|+++++++|.+.+.
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHH
Confidence 3568899999999999999987763
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.81 E-value=6.9e-20 Score=158.73 Aligned_cols=161 Identities=18% Similarity=0.101 Sum_probs=104.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+.+|.+.....+..+.. ...+.+|||||+.+... ...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~D~~g~~~~~~------~~~ 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKE------EVTLIVYDIWEQGDAGG------WLQ 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTE------EEEEEEECCCCC--------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCe------EEEEEEEECCCccccch------hhh
Confidence 468999999999999999999976654444444454444444443321 12688999999854311 012
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa 332 (384)
..++..+|++++|+|++++.+++....++.++..+.+ ..+.|+++|+||+|+....+ ..++..+.....+ +.++|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 2335679999999999998888888888877776543 23689999999999974322 1222333334444 568899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.++++++++|...+
T Consensus 149 ~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 44
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=5.5e-20 Score=165.02 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=115.0
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.||||||+.+.. ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~~-------~~ 73 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR------LVTMQIWDTAGQERFQ-------SL 73 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC------EEEEEEEEECSSGGGS-------CS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE------EEEEEEEeCCCcHHHH-------Hh
Confidence 3568999999999999999999987654444444444544444443321 1268999999985432 22
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCcc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDK 329 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~---~~~~~~ 329 (384)
+..++..+|++|+|+|++++.+++.+..|..++..+.. ...+.|+++|+||+|+.......+...+... ...+.+
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEE
Confidence 33557889999999999988777777777777665431 1136899999999999743222233333332 335668
Q ss_pred cccccccCHHHHHHHHHhccCc
Q 016700 330 VTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+|+.++.|+++++++|...+..
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.81 E-value=1.1e-19 Score=161.81 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=108.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++.......+.. |.......+.... ..+.||||||+.+ +...+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~--------~~~~i~Dt~G~~~-------~~~~~ 80 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGR--------VAFTVFDMGGAKK-------FRGLW 80 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETT--------EEEEEEEECCSGG-------GGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCC--------EEEEEEECCCCHh-------HHHHH
Confidence 468999999999999999999987654422222 3333333343222 3799999999854 33344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhc------CCCCCCCCEEEEEeCCCCCChH---HHHHHHHHH-H-Hh
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY------NPDYLERPFIVVLNKIDLPEAR---DRLQSLTEE-I-LK 324 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~------~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~-~-~~ 324 (384)
..+++.+|++|+|+|+++.++++....++..+... .+...+.|+++|+||+|+.... +..+.+... + ..
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 56688999999999999988887776666665432 1111268999999999998652 222222111 1 11
Q ss_pred --cCCcccccccccCHHHHHHHHHhccC
Q 016700 325 --IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 325 --~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.+.++|+.++.++++++++|...+.
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 23568899999999999999988764
No 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=162.40 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=112.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.||||||+.+ +...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~ 73 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND------KRIKLQIWDTAGLER-------YRTI 73 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGG-------GHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC------eEEEEEEEECCCchh-------hcch
Confidence 356899999999999999999998764332222222222222222211 012689999999843 4455
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~s 331 (384)
+..+++.+|++|+|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..+...+....+ .+.++|
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 67778999999999999988777777788888877642 4689999999999975321 112222333333 456889
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.++++++++|...+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987653
No 47
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=7.1e-20 Score=162.57 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=111.2
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.||||||..+. ..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~ 86 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD------KRIKLQIWDTAGQERY-------RT 86 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT------EEEEEEEEECCSCCSS-------CC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC------eEEEEEEEeCCCcHHH-------hh
Confidence 3457899999999999999999998764332222222222222222111 0126899999997542 22
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~ 330 (384)
.+..++..+|++|+|+|+++..+++....|+.++..+.. .+.|+++|+||+|+....+. .++..+....+ .+.++
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 345667899999999999988777777778888877642 36899999999999753211 22233333333 45688
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.++++++++|...+
T Consensus 165 Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 165 SAKENINVKQVFERLVDVI 183 (189)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 48
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=1.7e-20 Score=176.74 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=113.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc------ccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGK 249 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~------~~~ 249 (384)
+++|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.||||||+.+... ..+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--------~~~~lvDtpG~~~~~~~~~~~~~~e 72 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--------HLIEITDLPGVYSLVANAEGISQDE 72 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--------EEEEEEECCCCSSCC------CHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--------eEEEEEeCCCcccccccccCCCHHH
Confidence 36899999999999999999999987789999999999888887543 2789999999976432 112
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHHhcC
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIG 326 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~~~~~~ 326 (384)
.+...++.. +.+|++|+|+|+++. +....+...+.. .+.|+++|+||+|+.... ...+.+.+.+ ...
T Consensus 73 ~i~~~~~~~-~~~d~vi~VvDas~~---~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~ 142 (256)
T 3iby_A 73 QIAAQSVID-LEYDCIINVIDACHL---ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCS 142 (256)
T ss_dssp HHHHHHHHH-SCCSEEEEEEEGGGH---HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSC
T ss_pred HHHHHHHhh-CCCCEEEEEeeCCCc---hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCC
Confidence 233333221 789999999999873 333334444443 368999999999986432 1233343333 245
Q ss_pred CcccccccccCHHHHHHHHHhc
Q 016700 327 CDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+.++|+.++.|++++++.|.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6688999999999999999876
No 49
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.81 E-value=9.7e-20 Score=163.89 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=116.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||+.+. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~ 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK------TVKLQIWDTAGQERF-------RTI 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE------EEEEEEECCTTTTTT-------TCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEeCCChHHH-------HHH
Confidence 3568999999999999999999987655444454444444444433211 126899999997543 223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~s 331 (384)
+..+++.+|++|+|+|++++.+++.+..|+.++..+.. ...|+++|+||+|+....+ ..+...+..... .+.++|
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 44567899999999999998888888888888876653 3689999999999975321 122233333333 456889
Q ss_pred cccccCHHHHHHHHHhccCc
Q 016700 332 SETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~ 351 (384)
+.++.++++++++|...+..
T Consensus 152 a~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 50
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=1.5e-19 Score=155.89 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=108.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.... ...| |.......+.... ..+.+|||||+.+ +...+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~--------~~~~i~Dt~G~~~-------~~~~~~ 62 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLWR 62 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS--------CEEEEEECCCCGG-------GHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC--------EEEEEEEcCCChh-------hHHHHH
Confidence 37999999999999999999876532 2222 4434444454432 3799999999843 344556
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~~~~ 329 (384)
.++..+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+.. +.+.+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEE
Confidence 67899999999999998877777666665554321 224689999999999976422 2233332221 12558
Q ss_pred cccccccCHHHHHHHHHhccC
Q 016700 330 VTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+|+.++.++++++++|...+.
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCCCcCHHHHHHHHHHHHh
Confidence 899999999999999987663
No 51
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.81 E-value=5.7e-20 Score=163.66 Aligned_cols=161 Identities=16% Similarity=0.039 Sum_probs=111.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.+......+..+.+.....+..+.. ...+.||||||..+. ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~ 86 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK------QIKLQIWDTAGQESF-------RSI 86 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE------EEEEEEECCTTGGGT-------SCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEECCCchhh-------hhh
Confidence 3468999999999999999999987654433333333333333332210 126899999997543 223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~s 331 (384)
+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+. .++..+..... .+.++|
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 164 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 45567889999999999988777887778888876542 36899999999999643211 22233333333 456889
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.++++++++|+..+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987663
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.81 E-value=2.4e-19 Score=158.18 Aligned_cols=167 Identities=16% Similarity=0.059 Sum_probs=113.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecc-eEEecCCCCCCcc---ccCCceEEEeCCCCccccccccch
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAE---KYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~-~g~v~~~~~~~~~---~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
..+|+|+|.+|||||||+++|++........+..+.+.. ...+......... .....+.||||||+.+ +
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~ 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------F 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------G
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------H
Confidence 468999999999999999999986543322222222222 2233322110000 0012689999999843 4
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCD 328 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~ 328 (384)
...+..+++.+|++|+|+|++++.+++.+..++.++..+.. ..+.|+++|+||+|+....+ ..+.+.+.... ..+.
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 55677788999999999999988777777778777776542 13689999999999975321 12223333333 3566
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+.++.++++++++|...+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999987763
No 53
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.81 E-value=1.6e-19 Score=156.51 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=108.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+|+|.+|||||||+++|.+.... .. ..|.......+.... ..+.+|||||+.+ +..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~-------~~~ 66 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKN--------LKFQVWDLGGLTS-------IRP 66 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETT--------EEEEEEEECCCGG-------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECC--------EEEEEEECCCChh-------hhH
Confidence 34578999999999999999999876532 11 123333333343332 2789999999854 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----h--cC
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IG 326 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-----~--~~ 326 (384)
.+..+++.+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+....+ .+++.+.+. . +.
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCceE
Confidence 45567889999999999999888877766665554321 124689999999999976422 122333221 1 13
Q ss_pred CcccccccccCHHHHHHHHHhcc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+.++|+.++.++++++++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 54
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=4.7e-20 Score=159.73 Aligned_cols=159 Identities=18% Similarity=0.088 Sum_probs=108.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.+|||||+.+. ...+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~ 72 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK------RVNLAIWDTAGQERF-------HALG 72 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC------EEEEEEEECCCC--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCE------EEEEEEEECCCcHhh-------hhhH
Confidence 468999999999999999999987644333333333333334433221 126899999997542 2233
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa 332 (384)
..+++.+|++++|+|+++..+++....|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++|+
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA 150 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 4457889999999999987777777777777765432 3589999999999965321 1223333444444 557899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.++++++++|.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 55
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=1.2e-19 Score=162.15 Aligned_cols=152 Identities=24% Similarity=0.251 Sum_probs=109.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.+.. .+ .+|..+....+..+. ..+.+|||||+.+. ...+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~ 85 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN--------IKFTTFDLGGHIQA-------RRLWK 85 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT--------EEEEEEECCCSGGG-------TTSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC--------EEEEEEECCCCHHH-------HHHHH
Confidence 58999999999999999999986543 22 235555555555443 27899999998543 22334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh------------
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 324 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~------------ 324 (384)
.+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+.... ..+++.+.+..
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTCSSCCC---CCSS
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCC-CHHHHHHHhCCcccccccccccc
Confidence 56789999999999999888887777766665431 12468999999999997521 12334444332
Q ss_pred --cCCcccccccccCHHHHHHHHHhc
Q 016700 325 --IGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 325 --~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
..+.++|+.++.|+++++++|++.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 235688999999999999998754
No 56
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.81 E-value=4.4e-20 Score=159.34 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=109.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||+++|.+........+..+.+.....+..... ...+.+|||||..+. ...+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE------DVRLMLWDTAGQEEF-------DAIT 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE------EEEEEEECCTTGGGT-------TCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCE------EEEEEEEcCCCcHhH-------HHHH
Confidence 468999999999999999999987543322332222332333332210 126899999997543 2223
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~sa 332 (384)
..++..+|++++|+|++++.+++....|..++..+. .+.|+++|+||+|+....+ ..++..+..... .+.++|+
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 456788999999999998777777777777776543 3689999999999865321 122333333333 4568899
Q ss_pred ccccCHHHHHHHHHhcc
Q 016700 333 ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~ 349 (384)
.++.++++++++|.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp TTTBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
No 57
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.81 E-value=2e-20 Score=164.72 Aligned_cols=161 Identities=13% Similarity=0.098 Sum_probs=89.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........|.++.+.....+..+.. ...+.||||||+.+. ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~ 73 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK------RIKLQIWDTAGQERF-------RTI 73 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE------EEEEEEEEC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEcCCCChhh-------hhh
Confidence 3568999999999999999999976543333333343333333332210 126899999998542 222
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~s 331 (384)
+..+++.+|++|+|+|++++.+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..++..+..... .+.++|
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 34557889999999999988777777778888776532 3689999999999975321 122233333333 456889
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.++++++++|...+.
T Consensus 152 a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIK 170 (183)
T ss_dssp C---CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987763
No 58
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=9e-20 Score=164.11 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=105.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++.+.. .+. +|..+..+.+..+. ..+.+|||||+.+. ...+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~-------~~~~~ 87 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAG--------MTFTTFDLGGHIQA-------RRVWK 87 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT--------EEEEEEEECC-----------CCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECC--------EEEEEEECCCcHhh-------HHHHH
Confidence 58999999999999999999876532 221 34445555555432 27899999998543 22344
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh------------
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 324 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~------------ 324 (384)
.+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+... ...+++.+.+..
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccccc
Confidence 56788999999999999888877777766665431 1246999999999999752 112334443321
Q ss_pred -------cCCcccccccccCHHHHHHHHHhcc
Q 016700 325 -------IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 325 -------~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
..+.++|++++.|+++++++|++.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 2355789999999999999998654
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=2.3e-19 Score=159.79 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=110.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++... ...+..|+.......+..... ...+.||||||+.+. ...+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~D~~G~~~~-------~~~~ 83 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGK------QYLLGLYDTAGQEDY-------DRLR 83 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSC------EEEEEEECCCCSSSS-------TTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCE------EEEEEEEECCCCcch-------hHHH
Confidence 46899999999999999999998742 234455544443334433221 126899999998543 2233
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------------HHHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------------~~~l~~~ 321 (384)
..+++.+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+....+. .++..+.
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence 45678899999999999877777765 67777776543 6899999999999764211 1222222
Q ss_pred HHhc---CCcccccccccCHHHHHHHHHhcc
Q 016700 322 ILKI---GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 322 ~~~~---~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
...+ .+.++|+.++.|+++++++|...+
T Consensus 161 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 161 AKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3332 566889999999999999998754
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.81 E-value=1.6e-19 Score=158.51 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=114.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|.+... ...++.|+.......+..... ...+.||||||+.+ +...+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~~ 83 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQED-------YAAIR 83 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTC-------CHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCE------EEEEEEEECCCCcc-------cHHHH
Confidence 36899999999999999999998653 344555554444333332211 12689999999754 34455
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa 332 (384)
..++..+|++++|+|+++..+++....|+.++..+.. ..+.|+++|+||+|+....+ ..++..+.....+ +.++++
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 6678889999999999987777777777777766542 23689999999999865321 1334444445444 457899
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
.++.++++++++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987663
No 61
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.81 E-value=1.8e-19 Score=165.64 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=109.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
.||+|+|.+|||||||+++++...... .|. .|+ +.....+..... ...+.||||+|+.+ +...
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~-~Tig~d~~~k~~~~~~~------~v~l~iwDtaGqe~-------~~~l 78 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQ-ATIGIDFLSKTMYLEDR------TIRLQLWDTAGLER-------FRSL 78 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSC------EEEEEEECCSCTTT-------CGGG
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCC-CcC-CccceEEEEEEEEecce------EEEEEEEECCCchh-------hhhH
Confidence 489999999999999999998764321 221 122 111222222211 12689999999854 3344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e~~~~l~~~~~~~~~~~~ 330 (384)
...+++.++++++|+|+++..+++.+..|+.++..+.. .+.|++||+||+|+...+ +..+.+.+.+. +.+.++
T Consensus 79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~ 155 (216)
T 4dkx_A 79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIET 155 (216)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEE
T ss_pred HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEE
Confidence 55678899999999999999999999999988876543 368999999999997532 22333333322 346689
Q ss_pred ccccccCHHHHHHHHHhccCc
Q 016700 331 TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~ 351 (384)
||+++.+++++|+.|+..+..
T Consensus 156 SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC--
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 62
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=159.75 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=108.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.+.. .. ..|.......+.... ..+.+|||||+.+. ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~ 76 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVINN--------TRFLMWDIGGQESL-------RSS 76 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EE--ECCSCSSCEEEEETT--------EEEEEEECCC-----------CGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cC--cCCCccceEEEEECC--------EEEEEEECCCCHhH-------HHH
Confidence 4578999999999999999999976532 11 113323333343322 27899999998542 333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----hc--CC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-----~~--~~ 327 (384)
+..+++.+|++++|+|++++++++....++.++..+. ...+.|+++|+||+|+..... .+++.+.+. .. .+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEE
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCcEE
Confidence 4566789999999999999888888877777766431 124689999999999975321 223333332 12 34
Q ss_pred cccccccccCHHHHHHHHHhccCc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.++|+.++.|+++++++|++.+..
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EEccCCCCcCHHHHHHHHHHHHHH
Confidence 588999999999999999987644
No 63
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=156.79 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=106.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++........+ |........+.... ....+.+|||||+.+ +...+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~-------~~~~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-TVEDTYRQVISCDK------SICTLQITDTTGSHQ-------FPAMQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-CSCEEEEEEEEETT------EEEEEEEEECCSCSS-------CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccccEEEEEEECC------EEEEEEEEECCCchh-------hHHHHH
Confidence 5799999999999999999998654322111 11111111121111 012689999999854 334455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
.++..+|++++|+|++++.+++....++.++..+.....+.|+++|+||+|+....+. .+........ ..+.++|+.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 149 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCC
Confidence 6678899999999999877777777777777765433347999999999998643221 1122222233 345689999
Q ss_pred cccCHHHHHHHHHhccC
Q 016700 334 TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~~ 350 (384)
++.++++++++|.+.+.
T Consensus 150 ~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 150 LNHNVKELFQELLNLEK 166 (172)
T ss_dssp TTBSHHHHHHHHHHTCC
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999987664
No 64
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=1.2e-19 Score=183.44 Aligned_cols=158 Identities=22% Similarity=0.269 Sum_probs=107.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc--cccchhH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 253 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~--~~~gl~~ 253 (384)
++|+|||.||||||||+|+|++.+.. +.++|++|.+...+.+...+ ..+.+|||||+..... ..+.+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~~ 73 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--------KTFKLVDTCGVFDNPQDIISQKMKE 73 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--------EEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--------eEEEEEECCCccccccchHHHHHHH
Confidence 68999999999999999999998765 48999999999888876543 2689999999875321 1234566
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---ccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~---~~~ 330 (384)
.+..+++.||++|+|+|+++..+..+. .+.+.+.. .++|+++|+||+|+... ........+..+++ .++
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~-~i~~~l~~-----~~~p~ilv~NK~D~~~~--~~~~~~~~~~~lg~~~~~~i 145 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDE-SLADFLRK-----STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPV 145 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHH-HHHHHHHH-----HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEEC
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEeCCCCccc--cHHHHHHHHHhcCCCCEEEE
Confidence 677889999999999999876665442 23344443 25899999999998632 11222122334444 468
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.|++++++++.+.+.
T Consensus 146 SA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHhcc
Confidence 99999999999999987663
No 65
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.80 E-value=1.2e-19 Score=161.10 Aligned_cols=161 Identities=16% Similarity=0.036 Sum_probs=110.0
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh-H
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-R 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~-~ 253 (384)
...+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||..+ +. .
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~ 85 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE------RIKIQLWDTAGQER-------FRKS 85 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE------EEEEEEEECCCSHH-------HHTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCE------EEEEEEEECCCchh-------hhhh
Confidence 4578999999999999999999977644333333333333333332210 12689999999743 22 3
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~ 330 (384)
.+..+++.+|++|+|+|+++..+++.+..|..++..+.. ..+.|+++|+||+|+....+. .+...+..... .+.++
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 164 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFET 164 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEC
T ss_pred hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEE
Confidence 345667899999999999988777777778777776542 246899999999999653221 12222333333 45688
Q ss_pred ccccc---cCHHHHHHHHHhcc
Q 016700 331 TSETE---LSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~---~gv~e~l~~l~~~~ 349 (384)
|+.++ .++++++++|+..+
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC---
T ss_pred eCCcCCcccCHHHHHHHHHHHH
Confidence 99999 99999999998665
No 66
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.80 E-value=9.3e-20 Score=163.76 Aligned_cols=162 Identities=19% Similarity=0.130 Sum_probs=114.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........+.++.+.....+..+.. ...+.+|||||..... ....
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~Dt~g~~~~~------~~~~ 90 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE------EVTLVVYDIWEQGDAG------GWLR 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTE------EEEEEEECCCCCSGGG------HHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCE------EEEEEEEecCCCccch------hhhH
Confidence 468999999999999999999865544445565555544444433321 1268899999985321 1122
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~sa 332 (384)
..++..+|++|+|+|++++.+++.+..|+.++..+.. ....|+++|+||+|+....+ ..++..+..... .+.++|+
T Consensus 91 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa 169 (195)
T 3cbq_A 91 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 169 (195)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcC
Confidence 3456789999999999998888888888888776542 13689999999999975321 122233333333 4568999
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
.++.++++++++|...+.
T Consensus 170 ~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 170 ALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987663
No 67
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.80 E-value=1.2e-19 Score=159.43 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=111.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++... ...++.|+.......+..... ...+.+|||||+.+.. ..+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~~-------~~~ 71 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQ------EYHLQLVDTAGQDEYS-------IFP 71 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCCCCTTC-------CCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCE------EEEEEEEeCCCchhhh-------HHH
Confidence 35899999999999999999996652 344555554443333433221 1267999999986531 222
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~~--~~~~sa 332 (384)
..+++.+|++++|+|+++..+++.+..|..++..+.. ..+.|+++|+||+|+....+. .++..+.....+ +.++|+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 150 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence 3457789999999999998888888778777765432 236899999999999643221 233333444444 567899
Q ss_pred ccccCHHHHHHHHHhccCc
Q 016700 333 ETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~ 351 (384)
.++.+++++++.|...+..
T Consensus 151 ~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 68
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.80 E-value=1.4e-19 Score=158.46 Aligned_cols=154 Identities=11% Similarity=0.106 Sum_probs=106.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|++..... +..|+.+.....+..+.. ...+.+|||||+.. .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQ------THLVLIREEAGAPD------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTE------EEEEEEEECSSSCC------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCE------EEEEEEEECCCCch------------h
Confidence 589999999999999999999876432 222222222222322210 12689999999843 2
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCC------hHHHHHHHHHHHHhcCCcc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPE------ARDRLQSLTEEILKIGCDK 329 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~~p~ivV~NK~Dl~~------~~e~~~~l~~~~~~~~~~~ 329 (384)
.+++.+|++++|+|++++.+++.+..|++++..+.. ...+.|+++|+||+|+.. ..+..+.+.+.+....+.+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 456779999999999998888888776666654422 124689999999999942 1222333333333345678
Q ss_pred cccccccCHHHHHHHHHhccC
Q 016700 330 VTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+|++++.++++++++|...+.
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHH
Confidence 999999999999999987663
No 69
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.80 E-value=1.7e-19 Score=160.80 Aligned_cols=160 Identities=15% Similarity=0.071 Sum_probs=111.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++... ...+..|+.......+..... ...+.||||||..+. ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~ 87 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE------EFILHLWDTAGQEEY-------DRL 87 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGGG-------TTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCE------EEEEEEEECCCcHHH-------HHH
Confidence 457899999999999999999998764 233333433332223322211 125799999997542 333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh---HHHHHHHHHHHHhcC---C
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRLQSLTEEILKIG---C 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~---~e~~~~l~~~~~~~~---~ 327 (384)
+..++..+|++++|+|++++.+++.+ ..|..++..+. .+.|+++|+||+|+... ....++..+....++ +
T Consensus 88 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
T 3reg_A 88 RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAY 164 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCE
T ss_pred hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEE
Confidence 44567889999999999998777775 66777777654 36899999999998642 111223333333333 6
Q ss_pred cccccccccCHHHHHHHHHhccCc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.++|+.++.++++++++|.+.+..
T Consensus 165 ~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 165 IEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEeecCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999887643
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=161.90 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=106.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+|+|.+|||||||+++|++........+....+.....+..+.. ...+.||||||..+ +..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~ 92 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE------RTVLQLWDTAGQER-------FRS 92 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTE------EEEEEEEECTTCTT-------CHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCE------EEEEEEEECCCCcc-------hhh
Confidence 44579999999999999999999987643211121111222222222210 12689999999743 445
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh------HHH-HHHHHHHHHhc-
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDR-LQSLTEEILKI- 325 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~------~e~-~~~l~~~~~~~- 325 (384)
.+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+... .+. .+...+.....
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~ 170 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG 170 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence 566778899999999999988777777778888776542 36899999999998621 110 11222222333
Q ss_pred -CCcccccccccCHHHHHHHHHhccC
Q 016700 326 -GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 326 -~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.+.++|+.++.++++++++|+..+.
T Consensus 171 ~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 171 ALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999987653
No 71
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.80 E-value=9.8e-20 Score=164.60 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=113.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.||||||+.+. ...+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 74 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQ------IVNLGLWDTAGQEDY-------SRLR 74 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSC------EEEEEEECCCCCCCC-------CC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCE------EEEEEEEECCCcHHH-------HHHH
Confidence 36899999999999999999997653 234444444433333433221 126899999998543 2233
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---------HHHHHHHHHhc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---------LQSLTEEILKI 325 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~---------~~~l~~~~~~~ 325 (384)
..++..+|++|+|+|++++.+++.+. .|..++..+.+ +.|+++|+||+|+....+. .++..+....+
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 45678999999999999887777765 67788877643 6899999999998754321 23333333333
Q ss_pred ---CCcccccccccCHHHHHHHHHhccCcc
Q 016700 326 ---GCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 326 ---~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
.+.++|+.++.++++++++|...+...
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 456899999999999999999877543
No 72
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.80 E-value=2.7e-19 Score=159.06 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=109.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+|+|.+|||||||+++|++.+...... .|.......+.... ..+.||||||+.+ +..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~ 82 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGN--------VTIKLWDIGGQPR-------FRS 82 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETT--------EEEEEEEECCSHH-------HHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCC--------EEEEEEECCCCHh-------HHH
Confidence 455789999999999999999999776432222 23333333333222 2789999999854 333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cC
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IG 326 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~ 326 (384)
.+..+++.+|++|+|+|+++..+++....++.++.... ...+.|+++|+||+|+....+ .+++.+.+.. ..
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREIC 160 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCee
Confidence 45667889999999999998877777766666654321 124689999999999975422 1223332221 13
Q ss_pred CcccccccccCHHHHHHHHHhccC
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.++|+.++.|+++++++|...+.
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999997764
No 73
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=5.3e-20 Score=160.81 Aligned_cols=153 Identities=21% Similarity=0.220 Sum_probs=108.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.......++.+|.+.....+.... ..+.+|||||+.+.. ..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~-------~~ 71 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--------KKITFLDTPGHEAFT-------TM 71 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--------EEEEESCCCSSSSSS-------CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--------ceEEEEECCCCHHHH-------HH
Confidence 346899999999999999999998876656666666655554444332 268999999985532 22
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh----------
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---------- 324 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~---------- 324 (384)
+..++..+|++++|+|+++....+.+..+. .+.. .+.|+++|+||+|+.... .+++.+.+..
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~-~~~~-----~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 143 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAIN-HAKA-----ANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGG 143 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHH-HHGG-----GSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTS
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHh-----CCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCC
Confidence 335678899999999998876655554442 3322 368999999999998632 1122222221
Q ss_pred -cCCcccccccccCHHHHHHHHHhccC
Q 016700 325 -IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 325 -~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+.++|+.++.++++++++|...+.
T Consensus 144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 144 DTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 23557899999999999999987653
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=160.65 Aligned_cols=161 Identities=18% Similarity=0.067 Sum_probs=110.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
....+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.||||||+.+ +..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~ 89 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT------AAVKAQIWDTAGLER-------YRA 89 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT------EEEEEEEEEESCCCT-------TCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEeCCCchh-------hhh
Confidence 4567999999999999999999998765432222211111111222111 012689999999854 233
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~ 330 (384)
.+..++..+|++|+|+|++++.+++....|+.++..+.. .+.|+++|+||+|+....+ ..+...+.....+ +.++
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 167 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 455678899999999999987777777777777765432 4689999999999975321 1223333333444 5578
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.++.++++++++|...+
T Consensus 168 Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEI 186 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=4.3e-19 Score=152.07 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=109.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|.+.... ..+..|+.......+..... ...+.+|||||..+ +...+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~-------~~~~~~ 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEE-------YSAMRD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTE------EEEEEEEECCCCSS-------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCE------EEEEEEEECCCchh-------hhHHHH
Confidence 47999999999999999999976532 23333333322222322210 12589999999754 233445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa~t 334 (384)
.++..+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.......+...+.... ..+.++|+.+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKT 148 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCC
Confidence 567889999999999987777777777777766542 2368999999999987532222233333333 3466889999
Q ss_pred ccCHHHHHHHHHhcc
Q 016700 335 ELSSEDAVKSLSTEG 349 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~ 349 (384)
+.++++++++|.+.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 149 RQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 76
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.80 E-value=3.5e-19 Score=153.08 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=108.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|.+.... ..+..|+.......+..... ...+.+|||||+.+ +...+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~-------~~~~~~ 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSS------PSVLEILDTAGTEQ-------FASMRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTC-------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCE------EEEEEEEECCCchh-------hHHHHH
Confidence 58999999999999999999976543 23333333222233322211 12589999999743 344455
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 333 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~sa~ 333 (384)
.+++.+|++++|+|++++.+++....+..++..+.. ..+.|+++|+||+|+....+. .+...+.... ..+.++|+.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCC
Confidence 667889999999999987777777777777665432 246999999999998643221 1222223333 346688999
Q ss_pred cccCHHHHHHHHHhcc
Q 016700 334 TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 t~~gv~e~l~~l~~~~ 349 (384)
++.++++++++|.+.+
T Consensus 149 ~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 149 SKTMVDELFAEIVRQM 164 (167)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998754
No 77
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=3.7e-19 Score=156.51 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=109.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++.... ..+..|+.......+..... ...+.+|||||..+. ...+
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~ 83 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQ------WAILDVLDTAGQEEF-------SAMR 83 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE------EEEEEEEECCSCGGG-------CSSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCc------EEEEEEEECCCchhh-------HHHH
Confidence 468999999999999999999976432 33334443333333332211 124778999998543 2334
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh----HHHHHHHHHHHHhcCCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~----~e~~~~l~~~~~~~~~~~~s 331 (384)
..+++.+|++++|+|++++.+++.+..|..++..+.. ..+.|+++|+||+|+... .+..+.+.+.+. ..+.++|
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 161 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEec
Confidence 4567789999999999998777777777777755321 246899999999998652 222333333332 4566889
Q ss_pred cc-cccCHHHHHHHHHhcc
Q 016700 332 SE-TELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~-t~~gv~e~l~~l~~~~ 349 (384)
+. ++.++++++++|++.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 99 9999999999998754
No 78
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.6e-20 Score=164.24 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=112.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCcc--CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 251 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia--~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl 251 (384)
....+|+|+|.+|||||||+++|++...... +...++.......+... ...+.||||||..+ +
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~ 85 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK--------RVKLQIWDTAGQER-------Y 85 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT--------TEEEEEECHHHHHH-------C
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE--------EEEEEEEeCCChHH-------H
Confidence 4567999999999999999999998653221 11122222222222211 12689999999743 4
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCD 328 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~ 328 (384)
...+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+...... .++....... ..+.
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 45566778999999999999998888888888888887653 46899999999998643211 1222222233 3456
Q ss_pred ccccccccCHHHHHHHHHhcc
Q 016700 329 KVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~ 349 (384)
++|++++.++++++++|.+.+
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 164 EASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 889999999999999998765
No 79
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=1.4e-19 Score=159.92 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=109.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+++|.+|||||||+++|++.+ ...+. .|.......+.... ..+.+|||||+.+ +...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~-------~~~~ 78 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG--------FKLNIWDVGGQKS-------LRSY 78 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT--------EEEEEEEECCSHH-------HHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC--------EEEEEEECCCCHh-------HHHH
Confidence 45689999999999999999999876 32222 23333333443322 2789999999854 2333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~ 327 (384)
+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+. ...+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEE
Confidence 4566889999999999999887777766666655421 124689999999999976422 233333332 1235
Q ss_pred cccccccccCHHHHHHHHHhccC
Q 016700 328 DKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.++|+.++.++++++++|.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHH
Confidence 58899999999999999987653
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=7.6e-20 Score=160.40 Aligned_cols=158 Identities=17% Similarity=0.111 Sum_probs=103.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|..... ...+..|+.......+.... ....+.||||||+.+. ...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNG------ATVNLGLWDTAGQEDY-------NRLR 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------------CEEECCCC-CTT-------TTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECC------EEEEEEEEECCCChhh-------hhhH
Confidence 46899999999999999999997653 23333333222111111111 1125789999998542 2333
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-----------HHHHHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-----------LQSLTEEIL 323 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-----------~~~l~~~~~ 323 (384)
..+++.+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+....+. .++..+...
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 45678899999999999877777775 57777877643 6899999999998754331 222233333
Q ss_pred hc---CCcccccccccCHHHHHHHHHhccC
Q 016700 324 KI---GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 324 ~~---~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.. .+.++|+.++.++++++++|...+.
T Consensus 151 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 151 LIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33 4568999999999999999987653
No 81
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=2.6e-19 Score=158.47 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=106.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+++|.+|||||||+++|.+..... + ..|.......+.... ..+.+|||||+.. +...+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~--~-~~t~g~~~~~~~~~~--------~~l~i~Dt~G~~~-------~~~~~ 77 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISH--I-TPTQGFNIKSVQSQG--------FKLNVWDIGGQRK-------IRPYW 77 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEE--E-EEETTEEEEEEEETT--------EEEEEEECSSCGG-------GHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--c-cCcCCeEEEEEEECC--------EEEEEEECCCCHH-------HHHHH
Confidence 4689999999999999999999764321 1 011111122333221 2789999999843 45556
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-------~~~~~ 328 (384)
..++..+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+. .+.+.
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~ 155 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQ 155 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEE
Confidence 778899999999999998877777666655543211 124689999999999976432 233333321 12355
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+.++.|+++++++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC-
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999987763
No 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.80 E-value=8.8e-19 Score=155.19 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=106.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCc----eeecceEEecCCCCC-CccccCCceEEEeCCCCccccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT----TLMPNLGRLDGDPTL-GAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~t----T~~p~~g~v~~~~~~-~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
..+|+|+|.+|||||||++.|.+........... ...|..+.-...... ........+.||||||+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 86 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF------- 86 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS-------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH-------
Confidence 4689999999999999999998765432111000 011222211111000 0001112689999999843
Q ss_pred hhHHHHHHcccCCeEEEEeeCCCCCCH---hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC-
Q 016700 251 LGRNFLRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG- 326 (384)
Q Consensus 251 l~~~fl~~i~~ad~il~VvD~s~~~~~---~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~- 326 (384)
+...+..+++.+|++|+|+|++++... +.+..+...+..+.....+.|+++|+||+|+... ...+++.+.+...+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGK 165 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHHHHHHHHHhcCC
Confidence 445566778999999999999954222 2333344444444444467999999999999764 22344555555544
Q ss_pred --CcccccccccCHHHHHHHHHhccC
Q 016700 327 --CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 --~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.++|+.++.++++++++|+..+.
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 458899999999999999987663
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.2e-19 Score=158.84 Aligned_cols=162 Identities=12% Similarity=0.106 Sum_probs=109.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecc-eEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~-~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+|+|.+|||||||+++|++........+ |.... ...+..+. ....+.||||||+.+ +...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~ 72 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDK------SVCTLQITDTTGSHQ-------FPAM 72 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEEEEEEEEETT------EEEEEEEEECCGGGS-------CHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccceeEEEEECC------EEEEEEEEeCCChHH-------hHHH
Confidence 36899999999999999999998654321111 11111 11111111 012689999999754 3344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~--~~~~~sa 332 (384)
+..++..+|++++|+|++++.+++....++..+..+.....+.|+++|+||+|+.......+...+....+ .+.++|+
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSA 152 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence 55667889999999999987777766666666665433334689999999999975322222333333333 3568899
Q ss_pred ccccCHHHHHHHHHhccCcc
Q 016700 333 ETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~~~ 352 (384)
.++.|+++++++|.+.+...
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999877543
No 84
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.80 E-value=2e-19 Score=157.06 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=110.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++... ...++.|+.......+..... ...+.||||||+.+. ...+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~~~ 74 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGI------PARLDILDTAGQEEF-------GAMR 74 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTTT-------SCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCE------EEEEEEEECCCchhh-------HHHH
Confidence 35899999999999999999998742 344555554443333433211 126899999998543 2233
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~sa 332 (384)
..++..+|++++|+|+++..+++.+..++.++.... ...+.|+++|+||+|+....+. .+...+..... .+.++|+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 153 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 153 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 455778999999999998777777777776663321 1246899999999998753221 12222333333 3568899
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
.++.|+++++++|...+.
T Consensus 154 ~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987663
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.80 E-value=2e-19 Score=158.79 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=105.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.+... ...|.......+.... ..+.||||||+.+. ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~ 81 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVH---TSPTIGSNVEEIVINN--------TRFLMWDIGGQESL-------RSS 81 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEE---EECCSSSSCEEEEETT--------EEEEEEEESSSGGG-------TCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCc---cCCcCceeeEEEEECC--------EEEEEEECCCCHhH-------HHH
Confidence 34689999999999999999999876411 1112222223333222 27999999998542 333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----hc--CC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-----~~--~~ 327 (384)
+..+++.+|++++|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+. .. .+
T Consensus 82 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 82 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEE
Confidence 4566889999999999999888887776666655321 124689999999999976321 222333221 11 35
Q ss_pred cccccccccCHHHHHHHHHhc
Q 016700 328 DKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~ 348 (384)
.++|+.++.|+++++++|.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 688999999999999998754
No 86
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=1.6e-19 Score=171.60 Aligned_cols=156 Identities=20% Similarity=0.353 Sum_probs=114.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~ 253 (384)
..+|+|+|.||||||||+|+|++....++++|++|.++..+.+.. . ..+.+|||||+...... .+.+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~--------~~l~l~DtpG~~~~~~~~~~e~v~~ 73 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N--------KDLEIQDLPGIYSMSPYSPEAKVAR 73 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C--------TTEEEEECCCCSCSSCSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C--------CeEEEEECCCcCccCCCChHHHHHH
Confidence 358999999999999999999998877899999999988888764 2 27999999998653211 122333
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHHhcCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~~~~~~~~~~ 330 (384)
.++.. +.+|++++|+|+++. +....|..++.. .+.|+++|+||+|+.... ...+.+.+.+ ...+.++
T Consensus 74 ~~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~ 143 (272)
T 3b1v_A 74 DYLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVAT 143 (272)
T ss_dssp HHHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEEC
T ss_pred HHHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEE
Confidence 44332 469999999999863 333445555554 368999999999985321 1223343333 2456688
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.|++++++++...+.
T Consensus 144 SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 144 SALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp BTTTTBSHHHHHHHHHHSCT
T ss_pred EccCCCCHHHHHHHHHHHHh
Confidence 99999999999999988654
No 87
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=1.4e-18 Score=153.82 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=110.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc---c--
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---G-- 248 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~---~-- 248 (384)
..++|+|+|.+|||||||+++|++.... ..+.+++|......... .++.+|||||+...... .
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN-----------SKYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET-----------TTEEEEECCCBSSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC-----------CcEEEEECCCCccccCChhhHHH
Confidence 3468999999999999999999988743 36677777666554432 36899999997542111 0
Q ss_pred -cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHh
Q 016700 249 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK 324 (384)
Q Consensus 249 -~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~ 324 (384)
..+...+++....+|++++|+|++........ .+...+... +.|+++|+||+|+....+ ..+.+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 11233344455566999999999876555443 334445442 589999999999976433 23344444444
Q ss_pred c---CCcccccccccCHHHHHHHHHhccC
Q 016700 325 I---GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 325 ~---~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
. .+.++|+.++.++++++++|.+.+.
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 2 4668999999999999999987653
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.80 E-value=6.4e-20 Score=166.55 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=110.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc--cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i--a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
...+|+|+|.+|||||||+++|++..... .....++...... ..... ....+.||||||+.+. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~------~~~~~~l~Dt~G~~~~-------~ 75 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF-LDDQG------NVIKFNVWDTAGQEKK-------A 75 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE-EBTTS------CEEEEEEEEECSGGGT-------S
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE-EeCCC------cEEEEEEEecCCchhh-------c
Confidence 34689999999999999999999765332 1111222211111 11110 0125899999998543 2
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-HHHHHHHhcC--Ccc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEILKIG--CDK 329 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~-~l~~~~~~~~--~~~ 329 (384)
..+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+... ...+.....+ +.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence 2233457789999999999998877888778777776543 3589999999999976433222 2223333333 558
Q ss_pred cccccccCHHHHHHHHHhccCcccccc
Q 016700 330 VTSETELSSEDAVKSLSTEGGEADLLS 356 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~~~~~~ 356 (384)
+|+.++.++++++++|...+.......
T Consensus 154 ~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 154 ISAKTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp EBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccccc
Confidence 899999999999999998876554433
No 89
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.79 E-value=6.4e-20 Score=166.40 Aligned_cols=169 Identities=17% Similarity=0.095 Sum_probs=109.3
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC----ccccCCceEEEeCCCCcccccccc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----AEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~----~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
....+|+|+|.+|||||||+++|++........+..+.+.....+.+..... .......+.||||||+.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------ 96 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER------ 96 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh------
Confidence 3457899999999999999999998754322222222222222222211000 000012689999999743
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--C
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--G 326 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~ 326 (384)
+...+..+++.+|++|+|+|+++..+++.+..|+.++..+. ...+.|+++|+||+|+....+. .+...+..... .
T Consensus 97 -~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 97 -FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174 (217)
T ss_dssp -HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred -HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence 44556677899999999999998766666655555444322 1146899999999999753221 22333333333 4
Q ss_pred CcccccccccCHHHHHHHHHhccC
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.++|+.++.++++++++|...+.
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 568899999999999999987663
No 90
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.79 E-value=4.1e-19 Score=157.39 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=106.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+++|.+|||||||+++|++... ...+..|+.......+..... ...+.||||||..+ +...+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~~~ 87 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEE-------YSAMRD 87 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCC----------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCE------EEEEEEEECCChHH-------HHHHHH
Confidence 5899999999999999999997653 234444544333333332211 12589999999754 233445
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCccccccc
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 334 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~--~~~~~~sa~t 334 (384)
.+++.+|++++|+|+++..+++++..|..++..+.. ..+.|+++|+||+|+.......+++.+.... +.+.++|+.+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 166 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKT 166 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 668899999999999988777777777777776542 2368999999999987532222333333333 3466889999
Q ss_pred ccCHHHHHHHHHhccC
Q 016700 335 ELSSEDAVKSLSTEGG 350 (384)
Q Consensus 335 ~~gv~e~l~~l~~~~~ 350 (384)
+.++++++++|...+.
T Consensus 167 ~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 167 RQGVEDAFYTLVREIR 182 (190)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987663
No 91
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.79 E-value=8.7e-20 Score=164.14 Aligned_cols=162 Identities=14% Similarity=0.024 Sum_probs=109.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
....+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||+.+. ..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~ 89 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK------TVKLQIWDTAGQERF-------RS 89 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTE------EEEEEEECCTTHHHH-------SC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCe------eeEEEEEcCCCcHhH-------HH
Confidence 45679999999999999999999987654444444443433333332210 126899999997542 22
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~ 330 (384)
.+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 244567889999999999988777777778777776543 4689999999999864321 1223333344444 5578
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++++|...+.
T Consensus 168 SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987764
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=1.9e-19 Score=162.56 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=111.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|+.... ...+..|+.+.....+..... ...+.||||||+.+. ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 94 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK------PVNLGLWDTAGLEDY-------DRL 94 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-C------EEEEEEEEECCSGGG-------TTT
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCE------EEEEEEEECCCchhh-------HHH
Confidence 346899999999999999999997643 234455555444444443321 125679999998542 333
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHH
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTE 320 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~ 320 (384)
+..+++.+|++++|+|+++..+++... .|..++..+. .+.|+++|+||+|+....+.. ++..+
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 445688999999999999887777775 6777777654 368999999999997654322 12222
Q ss_pred HHHhcC---CcccccccccCHHHHHHHHHhcc
Q 016700 321 EILKIG---CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 321 ~~~~~~---~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.....+ +.++|+.++.|+++++++|.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 333333 56789999999999999998654
No 93
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=1.1e-18 Score=155.03 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=101.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC--CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc---cc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---GK 249 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~--~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~---~~ 249 (384)
...+|+|+|.+|||||||+++|++.. ....+.+++|.......+. .++.+|||||+.+.... .+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~l~Dt~G~~~~~~~~~~~~ 90 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----------DELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----------TTEEEEECCCBCCCSSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-----------CcEEEEECCCCCccccCHHHHH
Confidence 35789999999999999999999875 2346667777765544431 26999999997543211 11
Q ss_pred chh---HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH---HHHHHHHH
Q 016700 250 GLG---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL 323 (384)
Q Consensus 250 gl~---~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~---~~l~~~~~ 323 (384)
.+. ..+++....+|++++|+|+++..+..+.. +...+.. .+.|+++|+||+|+....+.. +++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence 122 23333334449999999999877766543 3344443 368999999999998754432 33333332
Q ss_pred h---cCCcccccccccCHHHHHHHHHhcc
Q 016700 324 K---IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 324 ~---~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
. ..+.++|+.++.++++++++|.+.+
T Consensus 165 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 165 IDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 2 2355789999999999999998654
No 94
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.79 E-value=1.6e-19 Score=158.57 Aligned_cols=158 Identities=18% Similarity=0.109 Sum_probs=108.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|++.... ..+..|+.......+.... ....+.+|||||+.+. ...+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 71 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDY-------DRLRP 71 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETT------EEEEEEEECCCCSGGG-------TTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECC------EEEEEEEEECCCCHhH-------HHHHH
Confidence 58999999999999999999976432 3333333322222222221 0126789999998543 22233
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~~ 322 (384)
.++..+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+....... ++..+..
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 4678899999999999877777765 57777776543 68999999999987543211 1222233
Q ss_pred Hhc---CCcccccccccCHHHHHHHHHhccCc
Q 016700 323 LKI---GCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 323 ~~~---~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
... .+.++|+.++.|+++++++|.+.+..
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 333 35688999999999999999987754
No 95
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=5.2e-19 Score=174.21 Aligned_cols=111 Identities=38% Similarity=0.643 Sum_probs=85.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCC---------CccccCCceEEEeCCCCcccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL 247 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~---------~~~~~~~~i~i~DtPG~~~~a~~ 247 (384)
.+|+|||.||||||||+|+|++....+++|||||+.|+.+.+...... ........+.||||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 579999999999999999999988778999999999999988764310 00000126999999999998888
Q ss_pred ccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHH
Q 016700 248 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 287 (384)
Q Consensus 248 ~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL 287 (384)
+++++..|+.++++||++++|+|+++ .++.+++..+..||
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 88999999999999999999999986 25667776665555
No 96
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=161.99 Aligned_cols=164 Identities=14% Similarity=0.047 Sum_probs=110.9
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
.+...+|+|+|.+|||||||+++|++.... ..+..|+.......+..... ...+.||||||..+. .
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~ 86 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD------EFHLHLVDTAGQDEY-------S 86 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------CEEEEEEEECCCCTT-------C
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE------EEEEEEEECCCccch-------H
Confidence 345679999999999999999999987644 33334443333333332211 126899999997543 2
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCcc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDK 329 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~ 329 (384)
..+..++..+|++++|+|+++..+++.+..|+.++..+.. ..+.|+++|+||+|+....+. .++..+.... ..+.+
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 2234567889999999999988888888888877765432 236899999999998743211 1222222233 34568
Q ss_pred cccccccCHHHHHHHHHhccCc
Q 016700 330 VTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+|+.++.++++++++|...+..
T Consensus 166 ~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 166 SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999887643
No 97
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=9.8e-20 Score=173.04 Aligned_cols=158 Identities=23% Similarity=0.351 Sum_probs=115.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc--cchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~--~gl~~~ 254 (384)
.+|+|+|.+|||||||+|+|++....++++|++|.++..+.+.... ..+.+|||||+.+..... ..+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--------HQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--------CEEEEEECCCCSCSCC----CCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--------CceEEEECcCCCccccccccCCHHHH
Confidence 5799999999999999999999987779999999999888887653 278999999997643211 122222
Q ss_pred HHHH---cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCc
Q 016700 255 FLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD 328 (384)
Q Consensus 255 fl~~---i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~~~~ 328 (384)
+.++ .+.+|++|+|+|+++. +....+...+... +.|+++|+||+|+..... ..+.+.+.+ ...+.
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i 146 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNL---ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVI 146 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEE
T ss_pred HHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEE
Confidence 2222 3789999999999863 3333444455442 589999999999864321 233343333 24566
Q ss_pred ccccccccCHHHHHHHHHhccCc
Q 016700 329 KVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
++|+.++.|++++++.|.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 88999999999999999887653
No 98
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-19 Score=164.05 Aligned_cols=163 Identities=15% Similarity=0.062 Sum_probs=109.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++........+..+.+.....+..... ...+.||||||+.+. ...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~ 78 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK------RIKAQIWDTAGQERY-------RAI 78 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTE------EEEEEEECCTTTTTT-------TCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEECCCccch-------hhh
Confidence 4578999999999999999999987655433343333333333332210 126899999997543 223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Ccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~~--~~~~s 331 (384)
+..+++.+|++|+|+|++++.+++.+..|+.++..+.. ...|+++|+||+|+....+. .++..+.....+ +.++|
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 156 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETS 156 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 34567889999999999998888888888888876542 36899999999999643211 122333333443 45789
Q ss_pred cccccCHHHHHHHHHhccCcc
Q 016700 332 SETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~~ 352 (384)
+.++.++++++++|...+...
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999877543
No 99
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.78 E-value=2e-19 Score=177.80 Aligned_cols=111 Identities=39% Similarity=0.672 Sum_probs=87.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCC--------Ccc-----ccCCceEEEeCCCCcc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAE-----KYSSEATLADLPGLIE 243 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~--------~~~-----~~~~~i~i~DtPG~~~ 243 (384)
.+|+|+|.||||||||+|+|++..+.+++|||+|+.|+.+.+...... ... .....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999999987778999999999999987543200 000 0113699999999999
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 287 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL 287 (384)
+++.+++++..|+.+++.||++++|+|+++ .++.+++..+..||
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL 135 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETEL 135 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHH
Confidence 998889999999999999999999999986 25666665554444
No 100
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.4e-19 Score=182.93 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=111.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh--
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-- 252 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~-- 252 (384)
..+|+|+|.||||||||+|+|++.+.. ++++++||.+.....+..+. ..+.||||||+.+.....+.+.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~~ 246 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEKY 246 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--------EEEEETTHHHHTCBTTBCCCCSHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--------eEEEEEECCCcCcCccccchHHHH
Confidence 468999999999999999999998765 58899999988777776543 2699999999976443222211
Q ss_pred --HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-----HHHHHHHHHHh-
Q 016700 253 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILK- 324 (384)
Q Consensus 253 --~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-----~~~~l~~~~~~- 324 (384)
...+.+++.||++|+|+|+++..+.++.. |...+.. .++|+++|+||+|+....+ ..+.+.+.+..
T Consensus 247 ~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~ 320 (436)
T 2hjg_A 247 SVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 320 (436)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC
Confidence 12346788999999999999988877764 4455543 3689999999999975422 22222333322
Q ss_pred --cCCcccccccccCHHHHHHHHHhccCc
Q 016700 325 --IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 325 --~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..+.++|+.++.+++++++.+...+..
T Consensus 321 ~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 321 DYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 245688999999999999999877654
No 101
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.6e-19 Score=182.40 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=100.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~~ 254 (384)
++|+|+|.||||||||+|+|++.+..+ .++|++|.+...+.+.... ..+.||||||+..... ..+.+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~~ 75 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQQ 75 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--------SCCEEEC---------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--------ceEEEEECCCCCCcchhHHHHHHHH
Confidence 689999999999999999999887654 8899999998888876553 3799999999963221 11234555
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Ccccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~---~~~~s 331 (384)
+..+++.||++|||+|+++..+..+. .+...+.. .++|+++|+||+|+....+. ..+ +..++ +.++|
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d~-~~~~~l~~-----~~~pvilv~NK~D~~~~~~~---~~~-~~~lg~~~~~~iS 145 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRAN---IYD-FYSLGFGEPYPIS 145 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHTT-----CCSCEEEEEECCCC-----C---CCS-SGGGSSCCCEECB
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCccchhh---HHH-HHHcCCCCeEEEe
Confidence 66788999999999999987666553 24344432 46899999999998753221 111 22333 45789
Q ss_pred cccccCHHHHHHHHHhccC
Q 016700 332 SETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~ 350 (384)
+.++.|++++++++.+.+.
T Consensus 146 A~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGG
T ss_pred CcCCCChHHHHHHHHHhcC
Confidence 9999999999999988774
No 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.78 E-value=5.1e-19 Score=159.05 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=107.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|.+..... .+..|+.......+..... ...+.||||||+.+. ...+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~ 90 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGK------QVELALWDTAGQEDY-------DRLR 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTE------EEEEEEECCCCSGGG-------TTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCE------EEEEEEEECCCchhH-------HHHH
Confidence 3589999999999999999999876432 2222322222222322210 126899999998542 2233
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~ 321 (384)
..+++.+|++++|+|++++.+++.. ..|..++..+. .+.|+++|+||+|+....+.. ++..+.
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 4567899999999999987777766 56777777654 368999999999997653221 122233
Q ss_pred HHhcC---CcccccccccCHHHHHHHHHhcc
Q 016700 322 ILKIG---CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 322 ~~~~~---~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
...++ +.++|+.++.|+++++++|...+
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 168 ANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333 45789999999999999998654
No 103
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.78 E-value=9.7e-19 Score=155.50 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=106.7
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|+|+|.+|||||||+++|++........+ |.......+..... ...+.||||||+... .
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~--- 81 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQ------SYLLLIRDEGGPPEL-------Q--- 81 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTE------EEEEEEEECSSSCCH-------H---
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCE------EEEEEEEECCCChhh-------h---
Confidence 36899999999999999999998654322112 22222223332221 126788999998432 1
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh------HHHHHHHHHHHHhcCCcc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDRLQSLTEEILKIGCDK 329 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~------~e~~~~l~~~~~~~~~~~ 329 (384)
++..+|++++|+|+++..+++.+..|+.++..+.. ..+.|+++|+||+|+... .+..+.+.+.+....+.+
T Consensus 82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence 56789999999999998888887888888876531 236899999999998421 222333333332344668
Q ss_pred cccccccCHHHHHHHHHhcc
Q 016700 330 VTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~ 349 (384)
+|++++.++++++++|+..+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 104
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.78 E-value=1e-18 Score=172.66 Aligned_cols=163 Identities=21% Similarity=0.282 Sum_probs=108.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc-cc-ccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HL-GKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a-~~-~~gl~~ 253 (384)
+..|+|+|+||||||||+|+|++....+.+++++|+++..+.+.... ..+.+|||||++... +. -+.+ .
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--------~~v~l~DT~G~i~~lp~~lve~f-~ 249 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--------RKIMLVDTVGFIRGIPPQIVDAF-F 249 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--------EEEEEEECCCBCSSCCGGGHHHH-H
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--------EEEEEEeCCCchhcCCHHHHHHH-H
Confidence 33499999999999999999999887678899999999998887653 268999999986531 11 0112 2
Q ss_pred HHHHHcccCCeEEEEeeCCCCC--CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHHHHhc----
Q 016700 254 NFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKI---- 325 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~~~~~---- 325 (384)
..+.++..+|++++|+|++++. ..+....+.+.+..+. ..+.|+++|+||+|+.... +..+.+......+
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 3456788999999999998765 3444455555555543 2468999999999997532 1122221122222
Q ss_pred -CCcccccccccCHHHHHHHHHhcc
Q 016700 326 -GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 326 -~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.++|+.++.|++++++.|.+.+
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHh
Confidence 356789999999999999988754
No 105
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.78 E-value=5.6e-19 Score=156.28 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=106.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++.... ..+..|+.......+..... ...+.||||||+.+. ....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYY-------DNVR 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSC------EEEEEEEEECCSGGG-------TTTG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCE------EEEEEEEECCCChhh-------hhhH
Confidence 368999999999999999999986532 22333322222223332211 126899999998543 2223
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------------HHHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------------~~~l~~~ 321 (384)
..++..+|++|+|+|++++.+++.+ ..|..++..+. .+.|+++|+||+|+...... .++..+.
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 3457889999999999987777776 56777777664 36899999999999742110 1222233
Q ss_pred HHh---cCCcccccc-cccCHHHHHHHHHhcc
Q 016700 322 ILK---IGCDKVTSE-TELSSEDAVKSLSTEG 349 (384)
Q Consensus 322 ~~~---~~~~~~sa~-t~~gv~e~l~~l~~~~ 349 (384)
... ..+.++|++ ++.+++++++.+...+
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 333 346688998 6899999999988654
No 106
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=162.06 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=98.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
-.+|+|+|.+|||||||+++|++.... ..+..|+.......+..... ...+.||||||+.+. ...+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~~~ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGK------PVHLHIWDTAGQDDY-------DRLR 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTE------EEEEEEEEC-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCE------EEEEEEEECCCchhh-------hHHH
Confidence 468999999999999999999976532 33333443333333322210 126899999998542 3334
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHH
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE 321 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~~~ 321 (384)
..++..+|++++|+|++++.+++... .|..++..+. .+.|+++|+||+|+....... ++..+.
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 45678899999999999877777764 5777777654 368999999999997654221 122333
Q ss_pred HHhcC---CcccccccccCHHHHHHHHHhccC
Q 016700 322 ILKIG---CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 322 ~~~~~---~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
...++ +.++|+.++.++++++++|...+.
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 33444 468899999999999999987663
No 107
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.78 E-value=5.5e-19 Score=158.02 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=104.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|+..+.. .. ..|.......+.... ..+.+|||||+.+ +...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~-------~~~~ 89 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN--------ICFTVWDVGGQDK-------IRPL 89 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETT--------EEEEEEECC------------CTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECC--------EEEEEEECCCCHh-------HHHH
Confidence 3468999999999999999999876532 11 123333333343322 2789999999854 2334
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~~ 327 (384)
+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+.. +.+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 5566789999999999998877777766665554321 124689999999999976422 2333333221 125
Q ss_pred cccccccccCHHHHHHHHHhcc
Q 016700 328 DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.++|+.++.++++++++|+..+
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHT
T ss_pred EECcCCCcCCHHHHHHHHHHHH
Confidence 5889999999999999998765
No 108
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.1e-18 Score=156.02 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=109.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++.+... .+..|+.......+.... ....+.||||||+.+ ...+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~--------~~~~ 92 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDD------EVVSMEILDTAGQED--------TIQR 92 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCC--------CHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECC------EEEEEEEEECCCCCc--------ccch
Confidence 4689999999999999999999875432 233332222222222221 012689999999854 2344
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~--~~~~~~sa 332 (384)
..++..+|++++|+|++++.+++.+..|+.++..+.. ..+.|+++|+||+|+....+ ..++..+.... ..+.++|+
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 171 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSA 171 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCT
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECC
Confidence 5667889999999999988778777777777766432 23689999999999865311 11222222233 34568899
Q ss_pred cccc-CHHHHHHHHHhcc
Q 016700 333 ETEL-SSEDAVKSLSTEG 349 (384)
Q Consensus 333 ~t~~-gv~e~l~~l~~~~ 349 (384)
.++. ++++++++|+..+
T Consensus 172 ~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 172 CTGEGNITEIFYELCREV 189 (196)
T ss_dssp TTCTTCHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHH
Confidence 9999 9999999998765
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=2.3e-19 Score=157.65 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=103.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.+... + ..|.......+.... ..+.+|||||+.+. ...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~ 78 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVT--T-KPTIGFNVETLSYKN--------LKLNVWDLGGQTSI-------RPY 78 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE--E-CSSTTCCEEEEEETT--------EEEEEEEEC----C-------CTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCc--c-CCcCccceEEEEECC--------EEEEEEECCCCHhH-------HHH
Confidence 34689999999999999999998654311 1 112222223333222 27899999998542 223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~~ 327 (384)
+..++..+|++++|+|++++.+++....++.++..+. ...+.|+++|+||+|+..... .+++.+.+.. ..+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 4456789999999999999888887776666655432 134689999999999976421 2333333321 134
Q ss_pred cccccccccCHHHHHHHHHhcc
Q 016700 328 DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.++|+.++.|+++++++|.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHH
Confidence 5789999999999999998765
No 110
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=3.4e-19 Score=181.01 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=114.4
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc---cc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---KG 250 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~---~g 250 (384)
...+|+++|.+|+|||||+|+|++.+. .++++++||.+.....+.... ..+.||||||+.+..... +.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~ 265 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEK 265 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--------EEEEETTGGGTTTBTTBCCCCSH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--------ceEEEEECCCCCcCcccchHHHH
Confidence 457899999999999999999998764 448899999998877776543 279999999987644321 11
Q ss_pred h-hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh----
Q 016700 251 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---- 324 (384)
Q Consensus 251 l-~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e~~~~l~~~~~~---- 324 (384)
+ ....+.++++||++|+|+|+++....++. .+...+.. .++|+++|+||+|+.... ...+++.+.+..
T Consensus 266 ~~~~~~~~~~~~ad~~llviD~~~~~~~~~~-~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T 4dcu_A 266 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF 339 (456)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCcCHHHH-HHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc
Confidence 2 22345688999999999999986665543 44455544 369999999999997532 223333333332
Q ss_pred ---cCCcccccccccCHHHHHHHHHhccCcc
Q 016700 325 ---IGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 325 ---~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
..+.++||.++.+++++++.+.+.+...
T Consensus 340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 3456889999999999999998876443
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=1e-18 Score=168.65 Aligned_cols=164 Identities=17% Similarity=0.090 Sum_probs=116.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+|+|.+|||||||+++|++... ...+++++|+....+.+.... ...+.||||||+..... .-+...+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~--~~~~~~~ 74 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFME--NYFTKQK 74 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHH--HHHTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhh--hhhhhHH
Confidence 5899999999999999999988754 446788999988888766422 13799999999854200 0002234
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------HHHHHHHHhcC--
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------QSLTEEILKIG-- 326 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------~~l~~~~~~~~-- 326 (384)
..+++.+|++|+|+|+++..+++++..|...+........+.|+++|+||+|+....+.. +++.+....++
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 456788999999999999888887766655444332112369999999999998732221 34444455554
Q ss_pred ---CcccccccccCHHHHHHHHHhccC
Q 016700 327 ---CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 ---~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.++|+.+ .++.+++..+...+.
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 34778888 888888888877654
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=2.7e-19 Score=168.62 Aligned_cols=155 Identities=23% Similarity=0.289 Sum_probs=112.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~~ 254 (384)
.+|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.||||||+...... .+.+...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~e~v~~~ 77 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--------YTINLIDLPGTYSLGYSSIDEKIARD 77 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSSCCSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--------eEEEEEECCCcCccCCCCHHHHHHHH
Confidence 5799999999999999999999887788999999988888876543 27999999998654221 1223344
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~~~~~~s 331 (384)
++.. +.+|++++|+|+++.+ ....+...+.. .+.|+++|+||+|+..... ..+.+.+.+ .+.+.++|
T Consensus 78 ~~~~-~~~d~ii~V~D~t~~~---~~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~S 147 (258)
T 3a1s_A 78 YLLK-GDADLVILVADSVNPE---QSLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTS 147 (258)
T ss_dssp HHHH-SCCSEEEEEEETTSCH---HHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEECC
T ss_pred HHhh-cCCCEEEEEeCCCchh---hHHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEEE
Confidence 4332 6899999999998743 22334455543 3699999999999854221 123333332 24566889
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
+.++.|++++++.+....
T Consensus 148 A~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHh
Confidence 999999999999998754
No 113
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.78 E-value=6.9e-19 Score=160.32 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=111.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.... ..+..|+.......+..... ...+.||||||..+. ...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 91 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQ------RVELSLWDTSGSPYY-------DNV 91 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--C------EEEEEEEEECCSGGG-------TTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCE------EEEEEEEECCCCHhH-------HHH
Confidence 3468999999999999999999987543 33333333222223332211 126899999998543 223
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-------------HHHHHHHH
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------DRLQSLTE 320 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-------------e~~~~l~~ 320 (384)
+..++..+|++|+|+|+++..+++. +..|+.++..+. .+.|+++|+||+|+.... ...++..+
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 3456788999999999999888877 678888888765 368999999999996421 11222333
Q ss_pred HHHhc---CCcccccccccC-HHHHHHHHHhccCc
Q 016700 321 EILKI---GCDKVTSETELS-SEDAVKSLSTEGGE 351 (384)
Q Consensus 321 ~~~~~---~~~~~sa~t~~g-v~e~l~~l~~~~~~ 351 (384)
....+ .+.++|+.++.+ ++++|+.|...+..
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 33333 346889999998 99999999877643
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=3.4e-19 Score=157.41 Aligned_cols=157 Identities=22% Similarity=0.376 Sum_probs=112.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc--ccchhHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 254 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~--~~gl~~~ 254 (384)
.+|+|+|.+|||||||+++|++....+..+|++|.++..+.+.... ..+.+|||||+.+.... .+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--------cEEEEEECCCcCccccccHHHHHHHH
Confidence 5799999999999999999998776667888889888888776543 27899999998654211 0112222
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHHhcCCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~~~~~~~~~~s 331 (384)
+++. ..+|++++|+|+++ .+....+..++.. .+.|+++|+||+|+.... +..+.+.+.+ ...+.++|
T Consensus 80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 149 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 149 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEE
Confidence 2221 35899999999875 4445556666654 368999999999985432 1233333332 24566899
Q ss_pred cccccCHHHHHHHHHhccCc
Q 016700 332 SETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~ 351 (384)
+.++.+++++++++...+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887754
No 115
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=1.6e-18 Score=162.16 Aligned_cols=166 Identities=19% Similarity=0.134 Sum_probs=107.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCC--ceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc-cchh
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPF--TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLG 252 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~--tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~-~gl~ 252 (384)
-.+|+|+|.+|||||||+|+|++.+..+..+++ +|..+..+.+.... ..++||||||+.+..... ..+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~i~liDTPG~~~~~~~~~~~~~ 92 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--------CHVEVVDTPDIFSSQVSKTDPGC 92 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--------EEEEEEECCSCSSTTHHHHSTTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--------cEEEEEECCCCCCCCCCcHHHHH
Confidence 357999999999999999999999887755544 77777777765443 379999999997543322 3333
Q ss_pred HHHHHHc----ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHH-----HHHHHH
Q 016700 253 RNFLRHL----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL-----QSLTEE 321 (384)
Q Consensus 253 ~~fl~~i----~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~~-----~~l~~~ 321 (384)
..+.+.+ ..+|++|+|+|++. ....+...+......+.+...+.|+++|.||+|+... .+.+ +.+.+.
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL 171 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH
Confidence 3344443 89999999999985 3444434333333344444457899999999999653 2222 234555
Q ss_pred HHhcCCccc--ccc-----cccCHHHHHHHHHhccC
Q 016700 322 ILKIGCDKV--TSE-----TELSSEDAVKSLSTEGG 350 (384)
Q Consensus 322 ~~~~~~~~~--sa~-----t~~gv~e~l~~l~~~~~ 350 (384)
++.++...+ +.. .+.+++++++.+.+.+.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 172 VAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 555554322 222 25788899888876654
No 116
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.77 E-value=3e-19 Score=159.93 Aligned_cols=165 Identities=20% Similarity=0.181 Sum_probs=85.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCce-eecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT-~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
...+|+|+|.+|||||||+++|++..... ..+..|+ .+.....+...... ....+.||||||+.+ +.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~-------~~ 87 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT----VSVELFLLDTAGSDL-------YK 87 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS----EEEEEEEEETTTTHH-------HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc----cEEEEEEEECCCcHH-------HH
Confidence 34689999999999999999999874333 3444444 24444455443210 012689999999853 34
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCC-hHHH-HHHHHHHHHhcC--C
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE-ARDR-LQSLTEEILKIG--C 327 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~~p~ivV~NK~Dl~~-~~e~-~~~l~~~~~~~~--~ 327 (384)
..+..+++.+|++|+|+|++++.+++....|+.++..+... ..+.|+++|+||+|+.. ..+. .++..+....++ +
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 167 (208)
T 2yc2_C 88 EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDF 167 (208)
T ss_dssp HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEE
Confidence 44566788999999999999988888888888888776431 23689999999999976 2211 233444444444 5
Q ss_pred ccccccc-ccCHHHHHHHHHhccC
Q 016700 328 DKVTSET-ELSSEDAVKSLSTEGG 350 (384)
Q Consensus 328 ~~~sa~t-~~gv~e~l~~l~~~~~ 350 (384)
.++|+.+ +.++++++++|...+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC-------CHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHH
Confidence 5789999 9999999999987663
No 117
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=5.7e-19 Score=159.45 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=105.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
.+|+|+|.+|||||||+++|++..... .+..|+.......+.... ....+.||||||+.+. ...+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDG------KQVELALWDTAGQEDY-------DRLRP 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT------EEEEEEEEECTTCTTC-------TTTGG
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECC------EEEEEEEEECCCcHHH-------HHHHH
Confidence 589999999999999999999876432 232233222222222221 0126899999998543 22334
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH-------------HHHHH
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-------------LTEEI 322 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~-------------l~~~~ 322 (384)
.+++.+|++++|+|+++..+++.. ..|..++..+. .+.|+++|+||+|+....+..+. ..+..
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMA 168 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHH
Confidence 567889999999999987777666 56777777654 36899999999999764322221 12222
Q ss_pred HhcC---CcccccccccCHHHHHHHHHhccC
Q 016700 323 LKIG---CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 323 ~~~~---~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
...+ +.++|+.++.|+++++++|...+.
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 169 VRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3333 467899999999999999987753
No 118
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.77 E-value=7e-19 Score=159.48 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=107.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++.... ..+..|+.......+..... ...+.||||||+... ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~ 92 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYY-------DNV 92 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSS------EEEEEEEEECCSGGG-------TTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCE------EEEEEEEeCCCcHhh-------hHH
Confidence 4578999999999999999999987543 22333332222223332211 126899999998543 122
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------------HHHHHH
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTE 320 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------------~~~l~~ 320 (384)
...++..+|++|+|+|+++..+++.+ ..|..++..+. .+.|+++|+||+|+...... .++..+
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 23457889999999999987777776 66777787764 36899999999999742111 122223
Q ss_pred HHHh---cCCcccccc-cccCHHHHHHHHHhcc
Q 016700 321 EILK---IGCDKVTSE-TELSSEDAVKSLSTEG 349 (384)
Q Consensus 321 ~~~~---~~~~~~sa~-t~~gv~e~l~~l~~~~ 349 (384)
.... ..+.++|++ ++.+++++++.|.+.+
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 3333 345688998 6889999999988654
No 119
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.77 E-value=7e-18 Score=166.06 Aligned_cols=164 Identities=27% Similarity=0.402 Sum_probs=121.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc-h-h
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-L-G 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g-l-~ 252 (384)
...+|+++|.+|||||||+|+|++..+.+.+++++|..+..+.+.... ..+.+|||||+.+....... + .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 237 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--------FRYQIIDTPGLLDRPISERNEIEK 237 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--------EEEEEEECTTTSSSCSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--------ceEEEEeCCCccccchhhhhHHHH
Confidence 456899999999999999999999887778899999988877765432 26899999999764322111 1 1
Q ss_pred HHHHHHcccCCeEEEEeeCCCCC--CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCc
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCD 328 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~--~~~ 328 (384)
..+......+|++|+|+|+++.. ..+....+..++..... ++|+++|+||+|+....+ .++..+.+... .+.
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 313 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPI 313 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeE
Confidence 22333334699999999998765 56666667777765432 699999999999987543 34444444433 466
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+.++.|+++++++|++.+.
T Consensus 314 ~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 314 KISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHHH
Confidence 8899999999999999988763
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.77 E-value=1.2e-20 Score=169.35 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=108.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
....+|+|+|.+|||||||+++|++........+.++.+.....+..... ...+.||||||..+. ..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~ 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQERF-------RT 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTE------EEEEEEECCTTCTTC-------CC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCE------EEEEEEEECCCcHhH-------HH
Confidence 34579999999999999999999987655444455555555555443321 126899999997543 22
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~ 330 (384)
.+..++..+|++|+|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+. .+...+.... ..+.++
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 175 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 175 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEE
Confidence 234467889999999999998888888888888876543 36899999999999753211 0112222233 356688
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.++++++++|.+.+.
T Consensus 176 SA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 176 SAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CC---HHHHHHHHHHTTTTT
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 121
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=2.7e-18 Score=155.27 Aligned_cols=158 Identities=23% Similarity=0.171 Sum_probs=99.1
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH-H
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-N 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~-~ 254 (384)
..+|+|+|.+|||||||+++|++.. ....++.++. ....+..... ....+.||||||+.+ +.. .
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~--~~~~~~~~~~-----~~~~~~i~Dt~G~~~-------~~~~~ 71 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITD--SSAIYKVNNN-----RGNSLTLIDLPGHES-------LRFQL 71 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSC--EEEEEECSST-----TCCEEEEEECCCCHH-------HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCcce--eeEEEEecCC-----CccEEEEEECCCChh-------HHHHH
Confidence 4689999999999999999999875 2344543332 2233433311 013699999999854 233 3
Q ss_pred HHHHcccCCeEEEEeeCCCCC-CHhH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHH------
Q 016700 255 FLRHLRRTRLLVHVIDAAAEN-PVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEIL------ 323 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~-~~~~-~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~l~~~~~------ 323 (384)
+..+++.+|++|+|+|+++.. .... ...|...+........+.|+++|+||+|+.... +..+.+.+.+.
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 151 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151 (214)
T ss_dssp HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccc
Confidence 445688999999999998622 1222 233433443321112368999999999997532 23333433333
Q ss_pred -------------------------------hcCCcccccccc------cCHHHHHHHHHhc
Q 016700 324 -------------------------------KIGCDKVTSETE------LSSEDAVKSLSTE 348 (384)
Q Consensus 324 -------------------------------~~~~~~~sa~t~------~gv~e~l~~l~~~ 348 (384)
...+.++|++++ .|+++++++|++.
T Consensus 152 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 152 SAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp C------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 122457899999 9999999998754
No 122
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.77 E-value=8.5e-19 Score=155.40 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=106.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+++|.+|||||||+++|...+.. ...| |.......+.... ..+.+|||||+.+.. ..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~-------~~ 82 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN--------ISFEVWDLGGQTGVR-------PY 82 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT--------EEEEEEEECCSSSSC-------CC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC--------EEEEEEECCCCHhHH-------HH
Confidence 3468999999999999999999865432 1112 2223333343322 278999999985432 22
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----h--cCC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-----~--~~~ 327 (384)
+..+++.+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+....+ .+++.+.+. . +.+
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEE
Confidence 3345788999999999999888877766665554321 234689999999999976422 122333221 1 135
Q ss_pred cccccccccCHHHHHHHHHhccC
Q 016700 328 DKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.++|+.++.++++++++|.+.+.
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEccCCCccCHHHHHHHHHHHHH
Confidence 57899999999999999987663
No 123
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=1.6e-18 Score=166.96 Aligned_cols=160 Identities=24% Similarity=0.305 Sum_probs=112.3
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCc-cccc-cccchhHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAH-LGKGLGRN 254 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~-~~a~-~~~gl~~~ 254 (384)
.|+|+|.||||||||+|+|++.+..+ ++.+.||.+...+.+.... .+++++||||+. .... .++.+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--------~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--------YQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--------EEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--------eeEEEEECcCCCccchhhHHHHHHHH
Confidence 69999999999999999999987654 6788888877777765432 278999999996 2110 11112222
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-hcCC---ccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGC---DKV 330 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~-~~~~---~~~ 330 (384)
...+++.+|++++|+|+++ ....+ ..+.+.+.. .+.|+++|+||+|+....+......+.+. .+++ .++
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 3456788999999999987 33333 334444442 36899999999999873333333333343 3443 467
Q ss_pred ccccccCHHHHHHHHHhccCcc
Q 016700 331 TSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
|++++.+++++++.+...+.+.
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBC
T ss_pred ECCCCCCHHHHHHHHHHhCCcC
Confidence 8899999999999999876543
No 124
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=161.09 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=99.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCC--CceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc--
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-- 250 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~--~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g-- 250 (384)
...+|+|+|.+|||||||+|+|++.......++ ++|..+....+.... ..+.||||||+.+.......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--------TELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--------EEEEEEECCSCC-----CHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--------ceEEEEECCCccCCCCCHHHHH
Confidence 457899999999999999999999887666666 677777766665443 37999999999876543332
Q ss_pred --hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------HHHHHH
Q 016700 251 --LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------QSLTEE 321 (384)
Q Consensus 251 --l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------~~l~~~ 321 (384)
+...+..+++.+|++|+|+|++.... .+...+...+..+... ..+|+++|+||+|+....+.. +.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 33334444566799999999986444 3333333333322211 236999999999987543211 234444
Q ss_pred HHhcCCccc--ccc-----cccCHHHHHHHHHhcc
Q 016700 322 ILKIGCDKV--TSE-----TELSSEDAVKSLSTEG 349 (384)
Q Consensus 322 ~~~~~~~~~--sa~-----t~~gv~e~l~~l~~~~ 349 (384)
+..++...+ +.. ...++.+++..+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 555554322 222 2357888888776655
No 125
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=2e-18 Score=176.76 Aligned_cols=157 Identities=16% Similarity=0.186 Sum_probs=116.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.||||||||+++|++.+. +. .++|+......+.+.. ..+.||||||+.+ +...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~~ 382 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKN--------VKFNVWDVGGQDK-------IRPL 382 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSS--------CEEEEEEECCCGG-------GSGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCC--------EEEEEEECCCcHH-------HHHH
Confidence 457899999999999999999998762 22 3457777777776643 2799999999754 3444
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCC
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 327 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~-------~~~ 327 (384)
+..+++.+|++|+|+|+++..+++....++.++.... ...++|+|+|+||+|+..... .+++.+.+.. ..+
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 460 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYV 460 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhh-hcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEE
Confidence 6678899999999999999888887776766664321 224699999999999976422 2233333221 125
Q ss_pred cccccccccCHHHHHHHHHhccCc
Q 016700 328 DKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 328 ~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.++|+.++.|+++++++|.+.+..
T Consensus 461 ~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp EECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 688999999999999999987643
No 126
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=4.8e-18 Score=152.09 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=98.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCcc--CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia--~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
...+|+|+|.+|||||||+++|.+...... ...+++ ......+.... ...+.||||||...... +.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~----~~ 86 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN-KIYKDDISNSS-------FVNFQIWDFPGQMDFFD----PT 86 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCC-SCEEEEECCTT-------SCCEEEEECCSSCCTTC----TT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeecccc-ceeeeeccCCC-------eeEEEEEECCCCHHHHh----hh
Confidence 456899999999999999999988533210 011111 11111111111 13799999999854211 11
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------HHHHHHHHHh-
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK- 324 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------~~~l~~~~~~- 324 (384)
.....+++.||++|+|+|+++. ..+.+..+...+........+.|+++|+||+|+...... .....+.+..
T Consensus 87 ~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 87 FDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp CCHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 0004567889999999999986 444444444444432111237899999999998764321 1111222222
Q ss_pred ----c--CCcccccccccCHHHHHHHHHhcc
Q 016700 325 ----I--GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 325 ----~--~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
. .+.++|+++ .+++++|+.|+..+
T Consensus 166 ~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 GLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2 345889999 99999999998754
No 127
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.7e-18 Score=158.47 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=105.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+|+|+|.+|||||||+++|++....+ ..++.++.+.....+..+.. ...+.+|||+|.... ...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~------~~~l~~~Dt~g~~~~------~~~ 103 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE------SATIILLDMWENKGE------NEW 103 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTE------EEEEEEECCTTTTHH------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCe------eeEEEEeecCCCcch------hhh
Confidence 34789999999999999999999765433 33443333322233332211 125789999997321 111
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~--~~~~~~ 330 (384)
....+++.++++|+|+|+++..+++....|+.++..... ..+.|+++|+||+|+...++. .++....... +.+.++
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~ 182 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIET 182 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEE
Confidence 112335678999999999998888887777777764321 236899999999999643211 1111122222 346688
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
||+++.+++++|++|+..+
T Consensus 183 SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 128
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=153.71 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=106.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++... ...+..|+.......+.... ....+.||||||+.... .+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~---- 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDH------QPVHLRVMDTADLDTPR----NC---- 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCC---CC----CT----
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECC------EEEEEEEEECCCCCcch----hH----
Confidence 46899999999999999999998752 23444444332222222211 01268899999985431 12
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCcccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~s 331 (384)
..++..+|++++|+|+++..+++....|+.++..+.. ...+.|+++|+||+|+....+ ..++..+..... .+.++|
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 3467889999999999988888887778777775421 013689999999999964321 112223333333 456889
Q ss_pred c-ccccCHHHHHHHHHhcc
Q 016700 332 S-ETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a-~t~~gv~e~l~~l~~~~ 349 (384)
+ .++.+++++++.|+..+
T Consensus 166 a~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHH
Confidence 9 89999999999998754
No 129
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.75 E-value=3.7e-19 Score=162.20 Aligned_cols=157 Identities=12% Similarity=0.054 Sum_probs=113.2
Q ss_pred cceEEEEecCCCcHHHHHHHHH-cCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAIT-HAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~-~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
..+|+|+|.+|||||||+++|+ +... ...+.+++|.......+.... ..+.||||||+... ..
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~ 79 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP--------IKFNVWDTAGQEKF-------GG 79 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEE--------EEEEEEEECSGGGT-------SC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE--------EEEEEEeCCChHHH-------hH
Confidence 4689999999999999999944 4322 235566667666555543321 26899999997543 22
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCcccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVT 331 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~--~~~~~~~s 331 (384)
.+..++..+|++++|+|+++..+++.+..|+.++..+. .+.|+++|+||+|+...... .+..+... ...+.++|
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S 155 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQYYDIS 155 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCEEEECB
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccccc-HHHHHHHHHcCCEEEEEe
Confidence 23455778999999999999888888888888887764 36899999999999753211 11112222 24466899
Q ss_pred cccccCHHHHHHHHHhccCc
Q 016700 332 SETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~~~ 351 (384)
+.++.++++++++|...+..
T Consensus 156 a~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987644
No 130
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=2.2e-19 Score=182.68 Aligned_cols=163 Identities=25% Similarity=0.276 Sum_probs=108.6
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
.++...+|+|+|.||||||||+|+|++.+.. +.++++||.+.....+.... ..+.||||||+.+....-+.
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--------~~v~liDT~G~~~~~~~ve~ 291 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--------IPVQVLDTAGIRETSDQVEK 291 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--------EEEEECC-------------
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--------EEEEEEECCccccchhHHHH
Confidence 4556778999999999999999999987654 58889999888766665543 27899999999764322222
Q ss_pred hh-HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcc
Q 016700 251 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 329 (384)
Q Consensus 251 l~-~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~ 329 (384)
++ ...+.++..+|++|+|+|++++....+ ..++..+. .+|+++|+||+|+...... ..+.+......+.+
T Consensus 292 ~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-------~~piivV~NK~Dl~~~~~~-~~~~~~~~~~~~i~ 362 (462)
T 3geh_A 292 IGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-------HRPLILVMNKIDLVEKQLI-TSLEYPENITQIVH 362 (462)
T ss_dssp -------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-------TSCEEEEEECTTSSCGGGS-TTCCCCTTCCCEEE
T ss_pred HHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-------CCcEEEEEECCCCCcchhh-HHHHHhccCCcEEE
Confidence 21 223567889999999999998766555 33444442 3799999999999865431 11111112234568
Q ss_pred cccccccCHHHHHHHHHhccCc
Q 016700 330 VTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 330 ~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+|++++.|++++++.|.+.+..
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 8999999999999999887654
No 131
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=5.5e-18 Score=149.50 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=100.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccc----ccch
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GKGL 251 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~----~~gl 251 (384)
+.+|+|+|.+|||||||+++|++........|++|.......+. .+.+|||||+...... .+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~------------~~~l~Dt~G~~~~~~~~~~~~~~~ 68 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK------------NHKIIDMPGFGFMMGLPKEVQERI 68 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET------------TEEEEECCCBSCCTTSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC------------CEEEEECCCccccccCCHHHHHHH
Confidence 36899999999999999999999876667777777655443331 6899999996432110 1112
Q ss_pred hH---HHHHH-cccCCeEEEEeeCCCCCCHhHH-HHHH------------HHHHhcCCCCCCCCEEEEEeCCCCCChH-H
Q 016700 252 GR---NFLRH-LRRTRLLVHVIDAAAENPVNDY-RTVK------------EELRMYNPDYLERPFIVVLNKIDLPEAR-D 313 (384)
Q Consensus 252 ~~---~fl~~-i~~ad~il~VvD~s~~~~~~~~-~~l~------------~eL~~~~~~l~~~p~ivV~NK~Dl~~~~-e 313 (384)
.. .+++. ...++++++|+|.++ +... ..|. ..+.. .+.|+++|+||+|+.... +
T Consensus 69 ~~~~~~~~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~ 140 (190)
T 2cxx_A 69 KDEIVHFIEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNVQE 140 (190)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCHHH
T ss_pred HHHHHHHHHhhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcHHH
Confidence 22 23333 455667777777643 3322 2222 12221 368999999999998653 2
Q ss_pred HHHHHHHHHHh------cCCcccccccccCHHHHHHHHHhccC
Q 016700 314 RLQSLTEEILK------IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 314 ~~~~l~~~~~~------~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+.+.+.+.. ..+.++|+.++.++++++++|...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 141 VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 33444433321 01368899999999999999987663
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=5.1e-18 Score=171.54 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=109.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc----cc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----KG 250 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~----~g 250 (384)
..+|+|+|.||||||||+|+|++.... ++++++||.++..+.+..++ ..+.+|||||+....... +.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--------~~~~l~Dt~G~~~~~~~~~~~~e~ 251 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--------RKYVFVDTAGLRRKSRVEPRTVEK 251 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--------EEEEESSCSCC-----------CC
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--------EEEEEEECCCCccccccchhhHHH
Confidence 468999999999999999999998764 58999999999888886553 268999999985432211 11
Q ss_pred h-hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHH----HHHHHh
Q 016700 251 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSL----TEEILK 324 (384)
Q Consensus 251 l-~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l----~~~~~~ 324 (384)
+ ....+.+++.+|++++|+|++...+.++.. +...+.. .++|+++|+||+|+....+ ..+++ .+.+..
T Consensus 252 ~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 325 (439)
T 1mky_A 252 YSNYRVVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF 325 (439)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc
Confidence 1 122356788999999999999876665533 3344443 3689999999999975432 12222 222222
Q ss_pred c---CCcccccccccCHHHHHHHHHhccCc
Q 016700 325 I---GCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 325 ~---~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
. .+.++|+.++.+++++++.+.+.+..
T Consensus 326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 326 IDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp GTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 34578999999999999999876543
No 133
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=165.95 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=107.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++... +..+| |.......+.... ..+.||||||... +...+
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~--------~~l~i~Dt~G~~~-------~~~~~ 226 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN--------ISFTVWDVGGQDK-------IRPLW 226 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT--------EEEEEEECC------------CCSH
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc--------EEEEEEECCCCHh-------HHHHH
Confidence 35899999999999999999987653 22222 5444444554332 2799999999744 33345
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 328 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~-------~~~ 328 (384)
..+++.+|++|+|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+... .+.
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~ 304 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQ 304 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEEE
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEEE
Confidence 566889999999999999888887766655554321 124689999999999986432 23344443322 245
Q ss_pred ccccccccCHHHHHHHHHhccC
Q 016700 329 KVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 329 ~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++|+.++.|++++++.|...+.
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHHHHHH
Confidence 7899999999999999987664
No 134
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.59 E-value=1.7e-19 Score=162.21 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=106.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
+...+|+|+|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.||||||+.+. ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDY-------DR 93 (204)
Confidence 4457899999999999999999986543 23333444333322222221 1125779999998542 33
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHH
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLT 319 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l~ 319 (384)
.+..+++.+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+....+.. ++..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 3445678899999999999988777765 56666665432 68999999999997542111 1111
Q ss_pred HHHHhc---CCcccccccccCHHHHHHHHHhc
Q 016700 320 EEILKI---GCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 320 ~~~~~~---~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+..... .+.++|+.++.|++++++.|.+.
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 222222 45688999999999999988754
No 135
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.73 E-value=4.1e-18 Score=152.61 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=104.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+|+|.+|||||||+++|++....+ ..++.++.+.....+..+.. ...+.+|||+|.... ...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~Dt~~~~~~---~~~~~~- 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE------SATIILLDMWENKGE---NEWLHD- 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTE------EEEEEEECCCCC-------CTTGG-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCe------EEEEEEEEeccCcch---hhhHHH-
Confidence 4689999999999999999999754333 33444333332233332211 125789999997431 112222
Q ss_pred HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCcccc
Q 016700 255 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 331 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-~~~l~~~~~~~--~~~~~s 331 (384)
.+++.+|++++|+|+++..+++....|+..+..... ..+.|+++|+||+|+...+.. .++........ .+.++|
T Consensus 76 --~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S 152 (192)
T 2cjw_A 76 --HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETS 152 (192)
T ss_dssp --GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred --hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEec
Confidence 235668999999999998888887777777765432 136899999999998642211 11111222223 356899
Q ss_pred cccccCHHHHHHHHHhcc
Q 016700 332 SETELSSEDAVKSLSTEG 349 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~~~ 349 (384)
|+++.+++++|++|+..+
T Consensus 153 A~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 153 AAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 999999999999998876
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=4.9e-18 Score=172.47 Aligned_cols=157 Identities=18% Similarity=0.250 Sum_probs=101.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccc-cccchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~~ 253 (384)
.++|+|+|.||||||||+|+|++.+.. +.++|++|.+.....+.... ..+.||||||+..... ..+.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--------SCCEEECCCC------CCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--------ceEEEEECCCCCCcchHHHHHHHH
Confidence 478999999999999999999988765 48899999998888776543 3799999999864221 1234555
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---ccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~---~~~ 330 (384)
.+..+++.||++|||+|+.......+. .+.+.+.. .++|+++|+||+|+....+. . ..+..+++ .++
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~---~-~e~~~lg~~~~~~i 164 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRAN---I-YDFYSLGFGEPYPI 164 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC-------------CCSGGGSSSSEEEC
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhh---H-HHHHHcCCCceEEe
Confidence 667788999999999998876555543 34444443 46999999999998753221 1 11223333 368
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+.++.|+.++++.+...+.
T Consensus 165 SA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGG
T ss_pred ecccccchHHHHHHHHhhcc
Confidence 99999999999999987653
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=6.4e-18 Score=159.82 Aligned_cols=158 Identities=22% Similarity=0.337 Sum_probs=111.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc--cchhH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGR 253 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~--~gl~~ 253 (384)
..+|+|+|.||||||||+|+|++....++++|++|.+...+.+.... ..+.||||||+.+..... +.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--------KEFLVVDLPGIYSLTAHSIDELIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--------EEEEEEECCCCSCCCSSCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--------ceEEEEeCCCccccccCCHHHHHHH
Confidence 46899999999999999999999887778899999988888776543 268999999997542211 11222
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~~~~~~ 330 (384)
.++. ...+|++++|+|+++. +....+...+..+ ...|+++|+||+|+..... ..+.+.+.+ ...+.++
T Consensus 75 ~~~~-~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~ 145 (271)
T 3k53_A 75 NFIL-DGNADVIVDIVDSTCL---MRNLFLTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPT 145 (271)
T ss_dssp HHHH-TTCCSEEEEEEEGGGH---HHHHHHHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEEC
T ss_pred Hhhh-ccCCcEEEEEecCCcc---hhhHHHHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEE
Confidence 2221 2679999999999863 2223333444432 1289999999999754321 133343333 2456688
Q ss_pred ccccccCHHHHHHHHHhccC
Q 016700 331 TSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~ 350 (384)
++.++.|++++++.+...+.
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHh
Confidence 99999999999999987653
No 138
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.72 E-value=8.4e-18 Score=161.74 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=112.6
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
++...+|+++|.+|||||||++++++... ...+..|+.+.....+..+.. ...+.||||||+... .
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~ 217 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK------PVNLGLWDTAGLEDY-------D 217 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTE------EEEEEEEEECCCGGG-------T
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCE------EEEEEEEeCCCchhh-------h
Confidence 45568999999999999999999997643 344555655444444433221 125679999998543 2
Q ss_pred HHHHHHcccCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHH
Q 016700 253 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSL 318 (384)
Q Consensus 253 ~~fl~~i~~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~-------------~~l 318 (384)
..+..++..+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+....+.. ++.
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 33345678999999999999877777765 56677776543 68999999999986542211 122
Q ss_pred HHHHHhc---CCcccccccccCHHHHHHHHHhcc
Q 016700 319 TEEILKI---GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 319 ~~~~~~~---~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+..... .+.++|+.++.|++++++.|...+
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 2233333 345789999999999999998765
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.72 E-value=3.1e-17 Score=153.66 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=106.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccC-CCC-ceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc---
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--- 250 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~-~~~-tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g--- 250 (384)
..+|+|+|.+|||||||+|+|++....+.. .+. +|.....+.+.... ..+.||||||+.+.......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~iiDTpG~~~~~~~~~~~~~ 93 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--------REIVIIDTPDMFSWKDHCEALYK 93 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--------EEEEEEECCGGGGSSCCCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--------CEEEEEECcCCCCCCCCHHHHHH
Confidence 468999999999999999999988755533 333 56666655554432 37999999999875433222
Q ss_pred -hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCChHHHHH--------HHHH
Q 016700 251 -LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEARDRLQ--------SLTE 320 (384)
Q Consensus 251 -l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~N-K~Dl~~~~e~~~--------~l~~ 320 (384)
+...+..++..+|++|+|+|++. .... ...++..+..+.......|.++|+| |+|+.... ... .+.+
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~~~-~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGR-YTSQ-DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTC-CCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCC-CCHH-HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHH
Confidence 13334456788999999999985 2222 2333344443321112467777777 99997531 111 1222
Q ss_pred HHHhcC-----C--cccccccccCHHHHHHHHHhccCc
Q 016700 321 EILKIG-----C--DKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 321 ~~~~~~-----~--~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.+..++ + .++|+.++.++++++..|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 333332 3 467888999999999999876543
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=5.6e-18 Score=170.38 Aligned_cols=160 Identities=26% Similarity=0.274 Sum_probs=112.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
...+|+|+|.+|+|||||+|+|++.+.. +.+++++|.++....+..... ..+.||||||+.+..........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHH
Confidence 3568999999999999999999988764 478899999998887765432 26999999999876544444445
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~---~~~~~~~ 330 (384)
.+..++..||++|+|+|++ ..+....++.++..+ +.|+++|+||+|+...... +..+.+. ...+.++
T Consensus 106 ~~~~~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSA---PTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHTSCSEEEEECSSS---CCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHhcCCEEEEEEeCC---ChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 5677889999999999992 234445677777763 6899999999999865432 2222222 2356688
Q ss_pred ccccccCHHHHHHHHHhccCc
Q 016700 331 TSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~~~ 351 (384)
|++++.+++++++.|.+.+..
T Consensus 176 SAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999988743
No 141
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.71 E-value=2e-17 Score=146.53 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=98.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.+|+|+|.+|||||||+++|++.... ...+.. |.............. .......+.+|||||+.+.. ..+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~-t~g~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-------~~~ 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSA-TVGIDVKDWPIQIRD-KRKRDLVLNVWDFAGREEFY-------STH 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC----------CEEEEEEECSHHHHH-------TTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcce-eccEEeEEeeecccc-CCCCceEEEEEecCCCHHHH-------Hhh
Confidence 57999999999999999999986322 222222 221111111111000 00001368999999985431 122
Q ss_pred HHHcccCCeEEEEeeCCCC-CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH---HHHHHHHH-hcC----
Q 016700 256 LRHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL-KIG---- 326 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~---~~l~~~~~-~~~---- 326 (384)
..++..++++++|+|++++ .+++.+..|+.++.... .+.|+++|+||+|+....... ....+.+. ..+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 3446679999999999886 35666777777776543 268999999999998654322 12222222 233
Q ss_pred --Cccccccccc-CHHHHHHHHHhccC
Q 016700 327 --CDKVTSETEL-SSEDAVKSLSTEGG 350 (384)
Q Consensus 327 --~~~~sa~t~~-gv~e~l~~l~~~~~ 350 (384)
+.++|++++. +++++++.+...+.
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred hheEEEecccCchhHHHHHHHHHHHHh
Confidence 4578899986 89999988876653
No 142
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.71 E-value=7.2e-18 Score=174.51 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=106.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC------CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~------~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
..+|+|+|.||||||||+++|++.+ +.++.+.+++..|+.+.+..... .....+.+|||||+... .
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~----~ 112 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIM----H 112 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTT----T
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHH----H
Confidence 4689999999999999999999876 33333334444444444433211 01237999999996443 2
Q ss_pred chhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--
Q 016700 250 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG-- 326 (384)
Q Consensus 250 gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~-- 326 (384)
.+...| ++.+|++|+|+|+++. +....|..++..+.+ +.|+++|+||+|+....+ ..+.+.+.+...+
T Consensus 113 ~~~~~~---l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 183 (535)
T 3dpu_A 113 ASHQFF---MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIENR 183 (535)
T ss_dssp TTCHHH---HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC
T ss_pred HHHHHH---ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcCCc
Confidence 233333 5669999999999854 666778888888764 689999999999975433 2344555555555
Q ss_pred CcccccccccCHHHHHHHHHhccCcc
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
+.++|+.++.|++++++.|.+.+...
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTCT
T ss_pred eEEEecCcccCHHHHHHHHHHHHhcc
Confidence 66899999999999999999877553
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=2.5e-16 Score=157.42 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=109.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecc-------eEEecCC----CCCCccccCCceEEEeCCCCcc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPN-------LGRLDGD----PTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~-------~g~v~~~----~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
..+|+++|.+|+|||||+++|++..... ..++.+|.... ....... ...........+.||||||+.
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~- 86 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE- 86 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH-
Confidence 4689999999999999999999864322 22333332110 0000000 000000001368999999983
Q ss_pred ccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHH
Q 016700 244 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTE 320 (384)
Q Consensus 244 ~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~ 320 (384)
.+...+...+..+|++|+|+|+++..+..+...++..+..+. .+|+++|+||+|+.+.++ ..+++.+
T Consensus 87 ------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 87 ------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp ------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHHHHHHHHHHHH
Confidence 466778888999999999999998765555555555555443 368999999999987543 2333334
Q ss_pred HHHh-----cCCcccccccccCHHHHHHHHHhccCc
Q 016700 321 EILK-----IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 321 ~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.+.. ..+.++|+.++.+++++++.|.+.+..
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 3332 245688999999999999999986644
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=2.6e-16 Score=149.03 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=89.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCC------CceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 250 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~g 250 (384)
.+|+|+|.+|+|||||+|+|++.+.....++ .+|............. .....+.||||||+.+.......
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG----GVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC------CCEEEEEEECCCCSCCSCCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC----CeEEEEEEEECCCccccccchhh
Confidence 5799999999999999999998877665553 3444433333322110 01126899999999653222111
Q ss_pred hh-------HHHHHHcc-------------cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 251 LG-------RNFLRHLR-------------RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 251 l~-------~~fl~~i~-------------~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
+. ..|..++. ++|+++|++|.+.......-..+...+.. .+|+++|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 11 12233333 37899999987763322222334445542 689999999999986
Q ss_pred hHHH---HHHHHHHHHhcC--CcccccccccCHHHHHHHHHhccC
Q 016700 311 ARDR---LQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 311 ~~e~---~~~l~~~~~~~~--~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+. .+.+.+.+...+ +..+++.++.++++++++|.+.+.
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 5432 233444554444 456788899999999999987653
No 145
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=1.7e-16 Score=142.29 Aligned_cols=160 Identities=20% Similarity=0.108 Sum_probs=108.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
..+|+|+|.+|||||||+++|++........|..+.++..+.+..+.. ...+.+|||||.... ..+ .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~------~~~~~i~Dt~g~~~~----~~~---~ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK------TIKAQIWDTAGQERY----RRI---T 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE------EEEEEEEECSSGGGT----TCC---C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCchhh----hhh---h
Confidence 468999999999999999999987654444444445555565554321 125789999997542 112 2
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cccccc
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 332 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~~--~~~~sa 332 (384)
..+++.++++++|+|+++..+++....|..++..+.. ...|+++|+||+|+....+ ..+.........+ +.++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sa 149 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeC
Confidence 3345678999999999987666666667666655432 3589999999999964221 1122223333333 456899
Q ss_pred ccccCHHHHHHHHHhccC
Q 016700 333 ETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 333 ~t~~gv~e~l~~l~~~~~ 350 (384)
.++.+++++++.|.+.+.
T Consensus 150 l~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.67 E-value=8.9e-17 Score=152.98 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=101.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC------ccCCCC----------------------ceeecceEEe-------c
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGRL-------D 219 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~------ia~~~~----------------------tT~~p~~g~v-------~ 219 (384)
..++|+|+|.||||||||+|+|++.+.. ++..|. ||.+.....+ .
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999987642 233443 3322100000 0
Q ss_pred C--CCCCCc-------cccCCceEEEeCCCCccccc--ccc----chhHHHHHHcccCCeEE-EEeeCCCCCCHhHHHHH
Q 016700 220 G--DPTLGA-------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTV 283 (384)
Q Consensus 220 ~--~~~~~~-------~~~~~~i~i~DtPG~~~~a~--~~~----gl~~~fl~~i~~ad~il-~VvD~s~~~~~~~~~~l 283 (384)
. ...... ......++||||||+.+... ..+ .+...+..+++.++.++ +|+|+++.....+...+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0 000000 00013799999999975321 011 34556677888888665 79999875444443334
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhc
Q 016700 284 KEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 284 ~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
...+.. .+.|+++|+||+|+....+ ..+.+...+.. ..+.++|+.++.+++++++.|..+
T Consensus 185 ~~~~~~-----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHCT-----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHhCC-----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 444432 3689999999999975432 12222221111 124578999999999999998764
No 147
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=3e-16 Score=142.20 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=77.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.++|+|+|.+|||||||+++|++...... .++..|..+. .+. ...+.+|||||+.+. ...+
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~-------~~~~ 72 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD--------GSGVTLVDFPGHVKL-------RYKL 72 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-TGG--------GSSCEEEECCCCGGG-------THHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-Eee--------CceEEEEECCCcHHH-------HHHH
Confidence 46899999999999999999998763221 0111122111 111 137999999999543 2233
Q ss_pred HHHcc----cCCeEEEEeeCC-CCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCh
Q 016700 256 LRHLR----RTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 256 l~~i~----~ad~il~VvD~s-~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~ 311 (384)
..++. .+|++|+|+|++ +..++.....++.++..... ...+.|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 33343 489999999999 77777666555555543210 1136999999999999764
No 148
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=156.94 Aligned_cols=119 Identities=33% Similarity=0.597 Sum_probs=72.7
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCC---------ccccCCceEEEeCCCCc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------AEKYSSEATLADLPGLI 242 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~---------~~~~~~~i~i~DtPG~~ 242 (384)
.++...+|+|+|.||||||||+|+|++.+..++++||||++|+.+.+...+..- .......+.+|||||+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 345567899999999999999999999988779999999999999987643100 00011258999999999
Q ss_pred cccccccchhHHHHHHcccCCeEEEEeeCCCC----------CCHhHHHHHHHHHHhc
Q 016700 243 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRMY 290 (384)
Q Consensus 243 ~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~----------~~~~~~~~l~~eL~~~ 290 (384)
++++.+++++..|+.+++.||++++|+|+++. ++.+++..+..||..+
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~ 155 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLK 155 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhh
Confidence 99888889999999999999999999999752 5677777777777543
No 149
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.65 E-value=4e-16 Score=139.32 Aligned_cols=161 Identities=20% Similarity=0.119 Sum_probs=110.0
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhH
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 253 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~ 253 (384)
....+|+|+|.+|||||||+++|++........+..+.+...+.+..+.. ...+.+|||||+... ..+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~------~~~~~i~Dt~g~~~~----~~~-- 94 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK------TIKAQIWDTAGLERY----RAI-- 94 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE------EEEEEEEEECSCCSS----SCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEECCCCcch----hhh--
Confidence 34578999999999999999999988765544555555556666654321 114678999998543 122
Q ss_pred HHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCccc
Q 016700 254 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKV 330 (384)
Q Consensus 254 ~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-~~~~l~~~~~~~--~~~~~ 330 (384)
+..+++.++++++|+|.++..+++.+..|..++..+.. ...|+++|+||+|+....+ ..+......... .+.++
T Consensus 95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~ 171 (191)
T 1oix_A 95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIET 171 (191)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 23445778999999999876666666666666655432 3589999999999864211 112222333333 34468
Q ss_pred ccccccCHHHHHHHHHhcc
Q 016700 331 TSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 331 sa~t~~gv~e~l~~l~~~~ 349 (384)
++.+..+++++++.|.+.+
T Consensus 172 Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999987643
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.65 E-value=8e-16 Score=157.32 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=103.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC-------CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 248 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~-------~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~ 248 (384)
-.+|+++|.+++|||||+++|++.. ......+++|++.....+.... ..++||||||+.+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--------~~i~iiDtPGh~~----- 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--------YRITLVDAPGHAD----- 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--------EEEEECCCSSHHH-----
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--------EEEEEEECCChHH-----
Confidence 3689999999999999999999876 1223455667766555554332 2799999999843
Q ss_pred cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhc
Q 016700 249 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI 325 (384)
Q Consensus 249 ~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~ 325 (384)
+...+...+..||++|+|+|+++....+..+.+. .+.. .+.|+++|+||+|+...+. ..+++.+.+...
T Consensus 86 --~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 86 --LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML-ILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp --HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH-HHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 5666778889999999999999765545444332 3333 3588899999999986422 233444444433
Q ss_pred ------CCcccccccccCHHHHHHHHHhcc
Q 016700 326 ------GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 326 ------~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.++|+.++.+++++++.|.+.+
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 355789999999999999998754
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=1.1e-15 Score=154.44 Aligned_cols=149 Identities=20% Similarity=0.196 Sum_probs=99.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~ 222 (384)
+...+|+++|.+|+|||||+++|+.....+ ...+++|++.....+....
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 345689999999999999999996543221 1124567766666665443
Q ss_pred CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCC-------HhHHHHHHHHHHhcCCCCC
Q 016700 223 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYL 295 (384)
Q Consensus 223 ~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~-------~~~~~~l~~eL~~~~~~l~ 295 (384)
..++||||||+.+ +...+...+..||++|+|||+++... .+..+.+ ..+.. .
T Consensus 95 --------~~~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l-~~~~~-----~ 153 (439)
T 3j2k_7 95 --------KHFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKT-----A 153 (439)
T ss_pred --------eEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHH-HHHHH-----c
Confidence 2799999999843 56667788899999999999987543 1222222 22222 3
Q ss_pred CCC-EEEEEeCCCCCCh---HHH----HHHHHHHHHhcC--------CcccccccccCHHHHHH
Q 016700 296 ERP-FIVVLNKIDLPEA---RDR----LQSLTEEILKIG--------CDKVTSETELSSEDAVK 343 (384)
Q Consensus 296 ~~p-~ivV~NK~Dl~~~---~e~----~~~l~~~~~~~~--------~~~~sa~t~~gv~e~l~ 343 (384)
+.| +++|+||+|+... ++. .+++.+.+..++ +.++|+.++.++.++.+
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 466 9999999999642 222 233333444433 45789999999998543
No 152
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=1.1e-15 Score=143.83 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=87.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
-.+|+|+|.+|||||||+|+|++.+. .+.+++++|.......+.... ..+.||||||+.+.....+...+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~liDTpG~~~~~~~~~~~~~~ 107 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--------FTINIIDTPGLVEAGYVNHQALEL 107 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--------eeEEEEECCCCCCcccchHHHHHH
Confidence 46899999999999999999999876 457788888888777665543 279999999998764433322222
Q ss_pred HHHHc--ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 255 FLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 255 fl~~i--~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
+.+++ ..+|++|||+|++.....+....+...+.........+|+++|+||+|+.
T Consensus 108 i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 108 IKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 22222 27899999988876443222234555565432211235999999999985
No 153
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.64 E-value=5.6e-16 Score=148.81 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=69.8
Q ss_pred CceEEEeCCCCccccc------cccchhHHHHHHcccCCeEEEEeeCCCCCCH-hHHHHHHHHHHhcCCCCCCCCEEEEE
Q 016700 231 SEATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYLERPFIVVL 303 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~------~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~-~~~~~l~~eL~~~~~~l~~~p~ivV~ 303 (384)
..++||||||+.+.+. ..+.+...+..++..+|++++|+|+++.... .+...+...+.. .+.|+++|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~ 205 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVI 205 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEE
Confidence 3799999999975321 1233556677889999999999998543222 222234444432 368999999
Q ss_pred eCCCCCChHH-HHHHHHHHHHh--cCCc---cccccc---ccCHHHHHHHHHhccC
Q 016700 304 NKIDLPEARD-RLQSLTEEILK--IGCD---KVTSET---ELSSEDAVKSLSTEGG 350 (384)
Q Consensus 304 NK~Dl~~~~e-~~~~l~~~~~~--~~~~---~~sa~t---~~gv~e~l~~l~~~~~ 350 (384)
||+|+....+ ..+.+...+.. .++. ..++.+ +.++.++++.+.+.+.
T Consensus 206 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp ECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9999975433 22222221112 2333 334444 6788999888776553
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.64 E-value=5.3e-16 Score=160.22 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=86.9
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCC----------------ccC------CCCceeecceEEecCCCCCCcccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD----------------IAD------YPFTTLMPNLGRLDGDPTLGAEKY 229 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~----------------ia~------~~~tT~~p~~g~v~~~~~~~~~~~ 229 (384)
++..+.+|+|+|.+|||||||+++|+..... ..+ .+++|+......+.+..
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------- 81 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD------- 81 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-------
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-------
Confidence 4566789999999999999999999622111 111 23445555555554432
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
..+.||||||+.+ +...+.+++..+|++|+|+|+++....+....| ..+.. .+.|+++|+||+|+.
T Consensus 82 -~~i~liDTPG~~d-------f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~-----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 82 -YLINLLDTPGHAD-------FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL-----RHTPIMTFINKMDRD 147 (528)
T ss_dssp -EEEEEECCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT-----TTCCEEEEEECTTSC
T ss_pred -EEEEEEECCCchh-------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEeCCCCc
Confidence 3799999999954 456678899999999999999987777665544 44443 368999999999997
Q ss_pred Ch
Q 016700 310 EA 311 (384)
Q Consensus 310 ~~ 311 (384)
..
T Consensus 148 ~~ 149 (528)
T 3tr5_A 148 TR 149 (528)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 155
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.64 E-value=9.8e-16 Score=144.69 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=85.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-ccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
..+|+++|.+|+|||||+|+|++.... +.+++.+|..+....+.... ..+.||||||+.+.......+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~iiDTpG~~~~~~~~~~~~~~ 110 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--------FTLNIIDTPGLIEGGYINDMALNI 110 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--------eEEEEEECCCCCCCccchHHHHHH
Confidence 468999999999999999999988753 46777888766655554332 279999999997754332222223
Q ss_pred HHHH--cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 255 FLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 255 fl~~--i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
+.++ ...+|++|||+|++..........+...+..........|+++|+||+|+...
T Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3233 24799999998886532222223455555433111112699999999999754
No 156
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=147.08 Aligned_cols=172 Identities=15% Similarity=0.101 Sum_probs=103.7
Q ss_pred cceEEEEecC---------CCcHHHHHHHHHcCC--CCccCCCCce--eecceEEecCCC--------CCCccccCCceE
Q 016700 176 VADVGLVGLP---------NAGKSTLLAAITHAK--PDIADYPFTT--LMPNLGRLDGDP--------TLGAEKYSSEAT 234 (384)
Q Consensus 176 ~~~V~lvG~p---------naGKSSLln~L~~~~--~~ia~~~~tT--~~p~~g~v~~~~--------~~~~~~~~~~i~ 234 (384)
..+|+|+|.+ |||||||+++|++.+ ..+.++..|| .+.....+.... ..........+.
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 98 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH 98 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEE
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEE
Confidence 4689999999 999999999999852 2334444444 222111111100 000000113688
Q ss_pred EEe------CCCCcccccc--------------------------ccchhHHHHHHcc-----cCCeEEEEeeCCCC--C
Q 016700 235 LAD------LPGLIEGAHL--------------------------GKGLGRNFLRHLR-----RTRLLVHVIDAAAE--N 275 (384)
Q Consensus 235 i~D------tPG~~~~a~~--------------------------~~gl~~~fl~~i~-----~ad~il~VvD~s~~--~ 275 (384)
||| |||....... ..++...|.+++. .||++|+|+|++++ .
T Consensus 99 i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~ 178 (255)
T 3c5h_A 99 IVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNR 178 (255)
T ss_dssp EEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----
T ss_pred EEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchh
Confidence 898 5554321110 0111122222222 69999999999998 8
Q ss_pred CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCcccccccccCHHHHHHHHHhcc
Q 016700 276 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 276 ~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~---~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
+++.+..|+.++..+.. ..+.|+++|+||+|+....+ .++..+.... +.+.++|+.++.++++++++|+..+
T Consensus 179 s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 179 NFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHH-HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHH-HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 88888888887765410 13589999999999976543 3444444433 3456789999999999999998654
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.63 E-value=2e-15 Score=151.12 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=107.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEecCC-----------CCCC--cccc--CCceEEE
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGD-----------PTLG--AEKY--SSEATLA 236 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v~~~-----------~~~~--~~~~--~~~i~i~ 236 (384)
...+|+++|.+++|||||+++|++..... ...++.|++......... .... ...+ ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34689999999999999999999654221 223455654432221110 0000 0000 1368999
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-- 313 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e-- 313 (384)
||||+.+ +...+.+.+..+|++|+|||+++.. ..+..+.+ ..+..+. ..|+++|+||+|+....+
T Consensus 89 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~~----~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 89 DAPGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQIIG----QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp ECSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHHT----CCCEEEEEECGGGSCHHHHH
T ss_pred ECCChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC----CCcEEEEEECccCCCHHHHH
Confidence 9999843 5566777788999999999999764 33333333 2333322 368999999999987542
Q ss_pred -HHHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccCc
Q 016700 314 -RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 314 -~~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
..+++.+.+.. ..+.++|+.++.+++++++.|.+.+..
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 34445555443 345688999999999999999886654
No 158
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.62 E-value=1.1e-15 Score=148.31 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=101.3
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 256 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl 256 (384)
||+|+|..|||||||++++.+..... .....+|+......+.. ..++.||||||+.+... ..+ ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~---------~v~LqIWDTAGQErf~~--~~l--~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST---------LIDLAVMELPGQLNYFE--PSY--DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECS---------SSCEEEEECCSCSSSCC--CSH--HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEcc---------EEEEEEEECCCchhccc--hhh--hhh
Confidence 68999999999999999987653221 12223455444444321 13799999999954310 000 235
Q ss_pred HHcccCCeEEEEeeCCCCCCHhHHHHH---HHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------HHHHHHHHHh--
Q 016700 257 RHLRRTRLLVHVIDAAAENPVNDYRTV---KEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK-- 324 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~~~~~~~~l---~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~-------~~~l~~~~~~-- 324 (384)
.+++.|+++|+|+|+++. ..+....| +.++..+. .+.|+++|+||+|+....++ ..+..+.+.+
T Consensus 68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 668899999999999987 44444444 33344433 36899999999999865332 1222222322
Q ss_pred -----cCCcccccccccCHHHHHHHHHhccCc
Q 016700 325 -----IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 325 -----~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+.+.++||.+ .++.++|..++..+..
T Consensus 144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred ccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 2345789987 5899999999987754
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.62 E-value=5.1e-17 Score=167.70 Aligned_cols=155 Identities=16% Similarity=0.126 Sum_probs=109.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.++|+++|.+|+|||||+++|++........+++|.+.....+.... ...++||||||+.+ +...+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~-------f~~~~ 69 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAA-------FSAMR 69 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCC-------TTTSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHH-------HHHHH
Confidence 46899999999999999999998765556677888777666554421 13689999999854 33334
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHH---HHh----cC
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---ILK----IG 326 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~~---~~~----~~ 326 (384)
.+++..+|++|+|+|+++....+....+. .+.. .+.|+++|+||+|+.... +....+.+. +.. ..
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~-~~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESIQ-HAKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHHH-HHHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCce
Confidence 45678899999999999877766655443 3332 368999999999987431 111112111 111 13
Q ss_pred CcccccccccCHHHHHHHHHhccC
Q 016700 327 CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+.++|+.++.|++++++.|...+.
T Consensus 144 iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 144 AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCchhHHHHHHHhhh
Confidence 457899999999999999987654
No 160
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-15 Score=134.58 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=75.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 254 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~ 254 (384)
...+|+|+|.+|||||||+++|++..... ...+..|.... .+. ...+.+|||||+..... .+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~~---~~~~~ 111 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLRY---KLSDY 111 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC--------CTTCSEEEETTCCBSSC---CHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-eec--------CCeEEEEECCCCchHHH---HHHHH
Confidence 45789999999999999999999875322 01111222211 111 13789999999965421 12233
Q ss_pred HHHHcccCCeEEEEeeCC-CCCCHhHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCh
Q 016700 255 FLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 255 fl~~i~~ad~il~VvD~s-~~~~~~~~~~l~~eL~~~~~--~l~~~p~ivV~NK~Dl~~~ 311 (384)
+...+..+|++|+|+|++ +..++.....++.++..... ...+.|+++|+||+|+...
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 334456699999999998 55555555444444432210 1136899999999999754
No 161
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.62 E-value=3.3e-15 Score=156.03 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=106.7
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCcc---------C------CCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~ia---------~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
++.+.+|+|+|.+++|||||+++|+.....+. + ..+.|+......+.+... +.. ...+.|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg~--~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DGN--TYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TSC--EEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CCC--eEEEEEEE
Confidence 34577899999999999999999975321111 0 123344333333322100 000 12688999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS 317 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~ 317 (384)
|||+.+ +...+.+++..||++|+|+|+++....+....|...+. .+.|+++|+||+|+.... .+.
T Consensus 80 TPGh~d-------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~ 144 (600)
T 2ywe_A 80 TPGHVD-------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDR 144 (600)
T ss_dssp CCCSGG-------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHH
T ss_pred CCCcHh-------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHH
Confidence 999965 45567788899999999999999877777776655543 368999999999997642 122
Q ss_pred HHHHH-HhcC-----CcccccccccCHHHHHHHHHhccCcc
Q 016700 318 LTEEI-LKIG-----CDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 318 l~~~~-~~~~-----~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
..+.+ ..++ +.++|+.++.|++++++++.+.+...
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 22222 2233 45789999999999999999877543
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.62 E-value=2.9e-15 Score=149.93 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=101.0
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCc---cCCCCceeecceEEecC-----------CCCCC--cccc--CCceEEE
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLA 236 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~i---a~~~~tT~~p~~g~v~~-----------~~~~~--~~~~--~~~i~i~ 236 (384)
...+|+++|.+++|||||+++|++..... ...++.|++........ ....+ ...+ ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34689999999999999999999654321 22344565443222111 00000 0000 1369999
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--- 312 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--- 312 (384)
||||+.+ +...+.+.+..+|++|+|+|+++.. ..+..+.+ ..+..+ ..+|+++|+||+|+....
T Consensus 87 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l----~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 87 DSPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEIL----GIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp ECSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHT----TCCCEEEEEECTTSSCTTTTT
T ss_pred ECCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHc----CCCeEEEEEEccCCCCHHHHH
Confidence 9999843 4556677788899999999999765 33333333 233332 236899999999997643
Q ss_pred HHHHHHHHHHHh-----cCCcccccccccCHHHHHHHHHhccCc
Q 016700 313 DRLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 313 e~~~~l~~~~~~-----~~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
+..+++.+.+.. ..+.++|+.++.+++++++.|...+..
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 345556665543 345688999999999999999986653
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.61 E-value=3e-15 Score=149.63 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=102.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC---CCC--c-c-----------CCCCceeecceEEecCCCCCCccccCCceEEEe
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA---KPD--I-A-----------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~---~~~--i-a-----------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
...+|+++|.+|+|||||+++|++. .-. . . ...+.|++.....+... ...+.|||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiD 81 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVD 81 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEE
Confidence 3468999999999999999999873 100 0 0 01233444333333322 13799999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHH-
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL- 315 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~- 315 (384)
|||+.+ +...+...+..+|++|+|+|+++....+.. .++..+.. .+.| +++|+||+|+....+..
T Consensus 82 tpG~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-~~l~~~~~-----~~ip~iivviNK~Dl~~~~~~~~ 148 (405)
T 2c78_A 82 CPGHAD-------YIKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-----VGVPYIVVFMNKVDMVDDPELLD 148 (405)
T ss_dssp CCCSGG-------GHHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH-----TTCCCEEEEEECGGGCCCHHHHH
T ss_pred CCChHH-------HHHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCEEEEEEECccccCcHHHHH
Confidence 999954 456677888999999999999987655443 34444544 2577 89999999998533322
Q ss_pred ---HHHHHHHHhcC-------CcccccccccC------------------HHHHHHHHHhccC
Q 016700 316 ---QSLTEEILKIG-------CDKVTSETELS------------------SEDAVKSLSTEGG 350 (384)
Q Consensus 316 ---~~l~~~~~~~~-------~~~~sa~t~~g------------------v~e~l~~l~~~~~ 350 (384)
+++.+.+..++ +.++|+.++.+ +.++++.|.+.+.
T Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 23444555444 34677777765 6777777776554
No 164
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.61 E-value=7e-16 Score=157.74 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=96.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~ 222 (384)
+...+|+++|.+|+|||||+++|+.....+ ...+++|++.....+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 456799999999999999999997552111 2234556665555555432
Q ss_pred CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCH------hHHHHHHHHHHhcCCCCCC
Q 016700 223 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE 296 (384)
Q Consensus 223 ~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~ 296 (384)
..+.||||||+. .+...+..++..||++|+|||+++...+ .+.......+... ..
T Consensus 111 --------~~~~iiDTPG~~-------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~ 171 (483)
T 3p26_A 111 --------ANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI 171 (483)
T ss_dssp --------CEEEEECCCCCG-------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TC
T ss_pred --------ceEEEEECCCcH-------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CC
Confidence 379999999994 3667788889999999999999885322 1222222223321 23
Q ss_pred CCEEEEEeCCCCCCh-HHHHH----HHHHHHHhc-------CCcccccccccCHHH
Q 016700 297 RPFIVVLNKIDLPEA-RDRLQ----SLTEEILKI-------GCDKVTSETELSSED 340 (384)
Q Consensus 297 ~p~ivV~NK~Dl~~~-~e~~~----~l~~~~~~~-------~~~~~sa~t~~gv~e 340 (384)
+|+|+|+||+|+... ++..+ .+.+.+..+ .+.++|+.++.|+++
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 679999999999762 22233 333334333 345789999988764
No 165
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.60 E-value=3.6e-15 Score=155.92 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=103.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCcc---------C------CCCceeecceEEecCCCCCCccccCCceEEEeCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIA---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia---------~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtP 239 (384)
.+.+|+|+|.+++|||||+++|+.....+. + ..+.|+......+.+... ... ...+.|||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g~--~~~l~liDTP 79 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DGE--TYQLNFIDTP 79 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TSC--EEEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CCC--eEEEEEEECC
Confidence 467899999999999999999986332211 0 123344333333322110 000 1268999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHH
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 317 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~ 317 (384)
|+.+ +...+.+++..||++|+|+|+++....+....|...+. .+.|+++|+||+|+.... +..++
T Consensus 80 Gh~d-------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~~~~v~~e 146 (599)
T 3cb4_D 80 GHVD-------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAADPERVAEE 146 (599)
T ss_dssp CCGG-------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCCHHHHHHH
T ss_pred CchH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCcccccHHHHHHH
Confidence 9954 55667788899999999999999877777776665543 368999999999997642 22333
Q ss_pred HHHHHHh--cCCcccccccccCHHHHHHHHHhccCcc
Q 016700 318 LTEEILK--IGCDKVTSETELSSEDAVKSLSTEGGEA 352 (384)
Q Consensus 318 l~~~~~~--~~~~~~sa~t~~gv~e~l~~l~~~~~~~ 352 (384)
+.+.+.. ..+.++|+.++.|++++++++.+.+...
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 3333211 0256789999999999999999877543
No 166
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.59 E-value=3e-15 Score=159.41 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=107.8
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCCceeecceE--------EecC-CCC---------------CCc-
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLG--------RLDG-DPT---------------LGA- 226 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~tT~~p~~g--------~v~~-~~~---------------~~~- 226 (384)
.+...+|+|+|.+|||||||+|+|++.+..+ +..|.|+. +..- ++.. +.. ...
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~-~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAV-LTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCC-CEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccc-eEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 3456799999999999999999999987544 55565521 0000 0000 000 000
Q ss_pred -------------------------cccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHH
Q 016700 227 -------------------------EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR 281 (384)
Q Consensus 227 -------------------------~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~ 281 (384)
......+.||||||+.+... ....+..+++.||++|||+|+++..+..+..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 00003699999999976421 3445667889999999999999887777766
Q ss_pred HHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----H---HHH----HHH----HHHHh-----------cCCcccccc--
Q 016700 282 TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----D---RLQ----SLT----EEILK-----------IGCDKVTSE-- 333 (384)
Q Consensus 282 ~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~----e---~~~----~l~----~~~~~-----------~~~~~~sa~-- 333 (384)
.|.+.+.. ...|+++|+||+|+.... + .++ .+. ..+.. ..+.++|+.
T Consensus 221 ~l~~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a 295 (695)
T 2j69_A 221 YLENYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA 295 (695)
T ss_dssp HHHHHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred HHHHHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence 56544432 257899999999986432 0 111 121 12211 134567888
Q ss_pred ------------cccCHHHHHHHHHhcc
Q 016700 334 ------------TELSSEDAVKSLSTEG 349 (384)
Q Consensus 334 ------------t~~gv~e~l~~l~~~~ 349 (384)
++.|++++++.|...+
T Consensus 296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 296 LRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 8999999998887755
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.8e-15 Score=156.37 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=100.3
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccC-------------------------------CCCceeecceEEecCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDP 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~-------------------------------~~~tT~~p~~g~v~~~~ 222 (384)
+...+|+++|.+|+|||||+++|+.....+.. .+++|++.....+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45679999999999999999999976544322 14667777666665543
Q ss_pred CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC------CHhHHHHHHHHHHhcCCCCCC
Q 016700 223 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLE 296 (384)
Q Consensus 223 ~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~ 296 (384)
..++||||||+. .+...+..++..||++|+|||+++.. ...+.......+... ..
T Consensus 245 --------~~~~iiDTPG~e-------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l----gi 305 (611)
T 3izq_1 245 --------ANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI 305 (611)
T ss_dssp --------CEEEEEECCSSS-------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT----TC
T ss_pred --------ceEEEEECCCCc-------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc----CC
Confidence 379999999994 36667778889999999999998631 011112222222221 12
Q ss_pred CCEEEEEeCCCCCCh-HHH----HHHHHHHHHhcC-------CcccccccccCHHHH
Q 016700 297 RPFIVVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDA 341 (384)
Q Consensus 297 ~p~ivV~NK~Dl~~~-~e~----~~~l~~~~~~~~-------~~~~sa~t~~gv~e~ 341 (384)
.|+|+|+||+|+... .+. .+.+...+..++ +.++|+.++.|+.++
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 459999999999862 222 333334444333 457899999998764
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=5.5e-15 Score=146.27 Aligned_cols=142 Identities=12% Similarity=0.093 Sum_probs=100.3
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 257 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~ 257 (384)
+|+++|.+|+|||||+++|+. .++|++.....+.... ..+.||||||+.+ +......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~--------~~i~iiDtPGh~~-------f~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG--------RNMVFVDAHSYPK-------TLKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS--------SEEEEEECTTTTT-------CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC--------eEEEEEECCChHH-------HHHHHHH
Confidence 899999999999999999982 3556665555554432 2699999999944 4556677
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCCCChHH---HHHHHHHHHHhc-----CC
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDLPEARD---RLQSLTEEILKI-----GC 327 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~-ivV~N-K~Dl~~~~e---~~~~l~~~~~~~-----~~ 327 (384)
.+..+|++|+||| +... ..+...++..+.. .+.|. ++|+| |+|+ ..+. ..+++.+.+... .+
T Consensus 80 ~~~~aD~ailVvd-~~g~-~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~i 151 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGL-DAHTGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWEC 151 (370)
T ss_dssp HHHTCSEEEEEEC-TTCC-CHHHHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEE
T ss_pred HHHHCCEEEEEEc-CCCC-cHHHHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 7899999999999 5443 3333444444544 35777 99999 9999 5322 123344444333 23
Q ss_pred cc--ccccc---ccCHHHHHHHHHhccC
Q 016700 328 DK--VTSET---ELSSEDAVKSLSTEGG 350 (384)
Q Consensus 328 ~~--~sa~t---~~gv~e~l~~l~~~~~ 350 (384)
.+ +|+.+ +.|++++++.|.+.+.
T Consensus 152 i~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 152 ISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp EECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EecccccccCcCCCCHHHHHHHHHhhcc
Confidence 46 88999 9999999998887653
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.58 E-value=1.2e-14 Score=145.00 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=102.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCc----------------cCCCCceeecceEEecCCCCCCccccCCceEEEeCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~i----------------a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtP 239 (384)
..+|+++|.+++|||||+++|++..... ....+.|++.....+... ...+.|||||
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtp 74 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCP 74 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECS
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECC
Confidence 3589999999999999999998741000 012344554433333322 1379999999
Q ss_pred CCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHH---
Q 016700 240 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL--- 315 (384)
Q Consensus 240 G~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~--- 315 (384)
|+.+ +...+...+..+|++|+|+|+++....+..+.+ ..+.. .+.| +++|+||+|+...++..
T Consensus 75 G~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~ 141 (397)
T 1d2e_A 75 GHAD-------YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQDSEMVELV 141 (397)
T ss_dssp SHHH-------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred ChHH-------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCCHHHHHHH
Confidence 9854 445667778999999999999987665555444 44443 3577 78999999998533322
Q ss_pred -HHHHHHHHhcC-------CcccccccccC----------HHHHHHHHHhccCc
Q 016700 316 -QSLTEEILKIG-------CDKVTSETELS----------SEDAVKSLSTEGGE 351 (384)
Q Consensus 316 -~~l~~~~~~~~-------~~~~sa~t~~g----------v~e~l~~l~~~~~~ 351 (384)
+++.+.+..++ +.++|+.++.+ +.++++.|.+.+..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 34445555544 34667777553 78888888776543
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=1.2e-14 Score=146.53 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=94.7
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-----------cCCCCce----------------------eecceEEecC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTT----------------------LMPNLGRLDG 220 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-----------a~~~~tT----------------------~~p~~g~v~~ 220 (384)
+...+|+++|.+|+|||||+++|+.....+ +.++.|| ++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 445789999999999999999998654222 1122332 2222222222
Q ss_pred CCCCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE
Q 016700 221 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 300 (384)
Q Consensus 221 ~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i 300 (384)
. ...+.||||||+.+ +...+..++..||++|+|+|+++....+..+ ++..+... .-+|++
T Consensus 102 ~--------~~~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~----~~~~iI 161 (434)
T 1zun_B 102 A--------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLL----GIKHIV 161 (434)
T ss_dssp S--------SEEEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHT----TCCEEE
T ss_pred C--------CceEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc----CCCeEE
Confidence 1 13689999999843 5566778889999999999999876544433 33333332 124699
Q ss_pred EEEeCCCCCCh-HHH----HHHHHHHHHhcC-------CcccccccccCHHHH
Q 016700 301 VVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDA 341 (384)
Q Consensus 301 vV~NK~Dl~~~-~e~----~~~l~~~~~~~~-------~~~~sa~t~~gv~e~ 341 (384)
+|+||+|+... ++. .+++.+.+..++ +.++|+.++.+++++
T Consensus 162 vviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 162 VAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp EEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred EEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 99999999862 232 334444455555 346788899988763
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=5.4e-14 Score=126.32 Aligned_cols=162 Identities=22% Similarity=0.199 Sum_probs=98.2
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCC--CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc-
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 248 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~--~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~- 248 (384)
.+....+|+|+|.+|||||||+++|++... .+.+.+++|.... .+.. ...+.+|||||+.......
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~---------~~~~~l~Dt~G~~~~~~~~~ 90 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV---------ADGKRLVDLPGYGYAEVPEE 90 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE---------ETTEEEEECCCCC------C
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe---------cCCEEEEECcCCcccccCHH
Confidence 445567899999999999999999998762 2255566665432 2211 1258999999985421100
Q ss_pred --cchh---HHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHH
Q 016700 249 --KGLG---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTE 320 (384)
Q Consensus 249 --~gl~---~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~---~~~l~~ 320 (384)
+.+. ..++.+...++.+++|+|++......+. .+...+.. ...|+++|.||+|+....+. .+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~ 164 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVRE 164 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHH
Confidence 0111 1233334678999999999886554332 23333332 35899999999999875332 334444
Q ss_pred HHHhcC----CcccccccccCHHHHHHHHHhccC
Q 016700 321 EILKIG----CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 321 ~~~~~~----~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.+.... ..++++.++.+++++++.|.+...
T Consensus 165 ~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 165 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 444432 347899999999999999887653
No 172
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.54 E-value=1.5e-14 Score=146.05 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=91.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCcc-------------------------------CCCCceeecceEEecCCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPT 223 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia-------------------------------~~~~tT~~p~~g~v~~~~~ 223 (384)
...+|+++|.+|+|||||+++|+.....+. ...++|++.....+....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 346899999999999999999986411110 024456555544444332
Q ss_pred CCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHh-------HHHHHHHHHHhcCCCCCC
Q 016700 224 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN-------DYRTVKEELRMYNPDYLE 296 (384)
Q Consensus 224 ~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~-------~~~~l~~eL~~~~~~l~~ 296 (384)
..+.||||||+.+ +...+..++..+|++|+|+|+++ .+++ +.......+..+ .-
T Consensus 84 -------~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~----~~ 144 (435)
T 1jny_A 84 -------YFFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM----GL 144 (435)
T ss_dssp -------CEEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT----TC
T ss_pred -------eEEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc----CC
Confidence 3799999999854 55667888999999999999997 3222 222232333322 12
Q ss_pred CCEEEEEeCCCCCCh---HH----HHHHHHHHHHhcC-------CcccccccccCHHH
Q 016700 297 RPFIVVLNKIDLPEA---RD----RLQSLTEEILKIG-------CDKVTSETELSSED 340 (384)
Q Consensus 297 ~p~ivV~NK~Dl~~~---~e----~~~~l~~~~~~~~-------~~~~sa~t~~gv~e 340 (384)
.|+++|+||+|+... ++ ..+++.+.+..++ +.++|+.++.++.+
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 468999999999762 22 2344555555544 44678888888864
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=5.7e-16 Score=158.60 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=100.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchhHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 255 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~f 255 (384)
.++|+++|.+++|||||+++|.+........+++|.+.....+..+. ..++||||||+.+. ...+
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--------~~i~~iDTPGhe~f-------~~~~ 68 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--------GMITFLDTPGHAAF-------TSMR 68 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--------SCCCEECCCTTTCC-------TTSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--------EEEEEEECCCcHHH-------HHHH
Confidence 46799999999999999999987543334445566554433333322 37899999998553 2233
Q ss_pred HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHH--HH-Hh----cC
Q 016700 256 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTE--EI-LK----IG 326 (384)
Q Consensus 256 l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~--e~~~~l~~--~~-~~----~~ 326 (384)
.+.+..||++|+|+|+++....+..+.+. .+.. .+.|+++|+||+|+.... +....+.+ .+ .. ..
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~-~~~~-----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~ 142 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQ-HAKA-----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQ 142 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHH-HHHH-----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCE
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHH-HHHh-----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCcc
Confidence 45678899999999998854444444332 3332 368999999999997531 11111100 00 11 23
Q ss_pred CcccccccccCHHHHHHHHHhc
Q 016700 327 CDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 327 ~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
+.++|+.++.|+++++++|...
T Consensus 143 ~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 143 FVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EEECCTTTCTTCTTHHHHTTTT
T ss_pred EEEEeeeeccCcchhhhhhhhh
Confidence 5578999999999999998754
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.53 E-value=8.4e-16 Score=160.83 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=82.2
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------------cCCCCceeecceEEecCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------------a~~~~tT~~p~~g~v~~~~ 222 (384)
+...+|+|+|.+|+|||||+++|+.....+ ...+++|++.....+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456789999999999999999996421111 1134556665555544332
Q ss_pred CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-------CHhHHHHHHHHHHhcCCCCC
Q 016700 223 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL 295 (384)
Q Consensus 223 ~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-------~~~~~~~l~~eL~~~~~~l~ 295 (384)
..++||||||+.+. ...+...+..||++|+|||+++.. ..+... ....+.. .
T Consensus 255 --------~~i~iiDTPGh~~f-------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~-----l 313 (592)
T 3mca_A 255 --------KIYEIGDAPGHRDF-------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA-----L 313 (592)
T ss_dssp ------------CCEEESSSEE-------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH-----S
T ss_pred --------eEEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH-----c
Confidence 37899999999653 233345567899999999998642 222222 2223333 2
Q ss_pred CCC-EEEEEeCCCCCC-hHHHH----HHHHHHH-HhcCC-------cccccccccCHH--------------HHHHHHHh
Q 016700 296 ERP-FIVVLNKIDLPE-ARDRL----QSLTEEI-LKIGC-------DKVTSETELSSE--------------DAVKSLST 347 (384)
Q Consensus 296 ~~p-~ivV~NK~Dl~~-~~e~~----~~l~~~~-~~~~~-------~~~sa~t~~gv~--------------e~l~~l~~ 347 (384)
+.| +|+|+||+|+.. ..+.. +++.+.+ ..+++ .++|+.++.|+. .+++.|..
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 455 999999999975 23333 3344444 33343 478999999987 67777665
Q ss_pred cc
Q 016700 348 EG 349 (384)
Q Consensus 348 ~~ 349 (384)
..
T Consensus 394 ~~ 395 (592)
T 3mca_A 394 LV 395 (592)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 175
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.52 E-value=4.8e-14 Score=146.29 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=85.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC---ccCCCCceeecceEEecCCC-------C------CCc---cccC-----
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------T------LGA---EKYS----- 230 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~---ia~~~~tT~~p~~g~v~~~~-------~------~~~---~~~~----- 230 (384)
..+.|+|+|.+|||||||+|+|++.+.. +++.|.||... +.+.... . ... ..++
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4578999999999999999999998763 56677664321 1111100 0 000 0000
Q ss_pred ------------CceEEEeCCCCccccc--cccc--hhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCC
Q 016700 231 ------------SEATLADLPGLIEGAH--LGKG--LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY 294 (384)
Q Consensus 231 ------------~~i~i~DtPG~~~~a~--~~~g--l~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l 294 (384)
..++||||||+.+... .++. +......++.++|++|+|+|+++....+....++..+..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----- 216 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----- 216 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----
Confidence 2689999999976322 1222 335556678899999999999875444444555555543
Q ss_pred CCCCEEEEEeCCCCCChHH
Q 016700 295 LERPFIVVLNKIDLPEARD 313 (384)
Q Consensus 295 ~~~p~ivV~NK~Dl~~~~e 313 (384)
...|+++|+||+|+...++
T Consensus 217 ~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp CGGGEEEEEECGGGSCHHH
T ss_pred cCCCEEEEEECCCccCHHH
Confidence 3579999999999987544
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.52 E-value=1.4e-14 Score=147.26 Aligned_cols=144 Identities=18% Similarity=0.159 Sum_probs=93.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCcc-------------------------C------CCCceeecceEEecCCCCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTL 224 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia-------------------------~------~~~tT~~p~~g~v~~~~~~ 224 (384)
..+|+++|.+|+|||||+++|+.....+. + ..+.|++.....+....
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-- 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence 36899999999999999999986411110 0 13456555555544332
Q ss_pred CccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCH-------hHHHHHHHHHHhcCCCCCCC
Q 016700 225 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-------NDYRTVKEELRMYNPDYLER 297 (384)
Q Consensus 225 ~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~-------~~~~~l~~eL~~~~~~l~~~ 297 (384)
..++||||||+. .+...+...+..+|++|+|||+++.... +..+ .+..+.. .+.
T Consensus 85 ------~~~~iiDtPGh~-------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~-----~~v 145 (458)
T 1f60_A 85 ------YQVTVIDAPGHR-------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT-----LGV 145 (458)
T ss_dssp ------EEEEEEECCCCT-------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH-----TTC
T ss_pred ------ceEEEEECCCcH-------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH-----cCC
Confidence 379999999984 3566677888999999999999864211 2222 2222322 245
Q ss_pred C-EEEEEeCCCCCC-hHHHH----HHHHHHHHhcC-------CcccccccccCHHH
Q 016700 298 P-FIVVLNKIDLPE-ARDRL----QSLTEEILKIG-------CDKVTSETELSSED 340 (384)
Q Consensus 298 p-~ivV~NK~Dl~~-~~e~~----~~l~~~~~~~~-------~~~~sa~t~~gv~e 340 (384)
| +++|+||+|+.. .++.+ +++.+.+..++ +.++|+.++.++.+
T Consensus 146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 5 999999999974 22322 33444444433 45778888888764
No 177
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=7.6e-15 Score=144.09 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=93.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCC-----c-cCCCC----------------------ceeecc-------------
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPN------------- 214 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~-----i-a~~~~----------------------tT~~p~------------- 214 (384)
.++|+|+|.||||||||+|+|++.+.. + +..|. +|.+..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999987642 1 33333 221100
Q ss_pred --eEEecCCCCCC-ccccCCceEEEeCCCCcccccc--c----cchhHHHHHHcccC-CeEEEEeeCCCCCCHhHHHHHH
Q 016700 215 --LGRLDGDPTLG-AEKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHLRRT-RLLVHVIDAAAENPVNDYRTVK 284 (384)
Q Consensus 215 --~g~v~~~~~~~-~~~~~~~i~i~DtPG~~~~a~~--~----~gl~~~fl~~i~~a-d~il~VvD~s~~~~~~~~~~l~ 284 (384)
.+......... .......++||||||+...+.. . +.+......++..+ +++|+|+|++......+...+.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 00000000000 0000237999999999763321 1 13344555666554 5666677776532222322233
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-HHHHHh--c---CCcccccccccCHHHHHHHHHh
Q 016700 285 EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILK--I---GCDKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 285 ~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l-~~~~~~--~---~~~~~sa~t~~gv~e~l~~l~~ 347 (384)
.++ .+ .+.|+++|+||+|+....+....+ ...... . .+..+|+.++.+++++++.+.+
T Consensus 191 ~~~---~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEV---DP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHH---CT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHh---Cc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 333 32 468999999999997543211111 111111 1 2446788899999998888876
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.51 E-value=1.4e-14 Score=142.39 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=80.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecce-------------EEecCCCCC----------------
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-------------GRLDGDPTL---------------- 224 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~-------------g~v~~~~~~---------------- 224 (384)
..++.|+|+|.+|||||||+|+|++..........+|..|.. +.+......
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 456799999999999999999999965322111122222111 111100000
Q ss_pred ----------C--------ccccCCceEEEeCCCCccccc------cccchhHHHHHHcccCCeEEEEeeCCCCCCHhHH
Q 016700 225 ----------G--------AEKYSSEATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY 280 (384)
Q Consensus 225 ----------~--------~~~~~~~i~i~DtPG~~~~a~------~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~ 280 (384)
. .......++||||||+..... ....+...+..+++.+|++|+|+|.++.+...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0 000023689999999987432 11223555677889999999999987644332
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 281 RTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 281 ~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
..+...+....+ .+.|+++|+||+|+...
T Consensus 190 ~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 SDAIKISREVDP--SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CHHHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence 122333444333 46899999999998753
No 179
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.50 E-value=6e-14 Score=146.65 Aligned_cols=161 Identities=19% Similarity=0.133 Sum_probs=97.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCC------CCC-Cccc--c-CCceEEEeCCCCcccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD------PTL-GAEK--Y-SSEATLADLPGLIEGA 245 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~------~~~-~~~~--~-~~~i~i~DtPG~~~~a 245 (384)
.++|+|+|.+|+|||||+++|++...........|.+.....+... ... .... + ...++||||||+.+..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 3679999999999999999998653211110122221111111100 000 0000 0 1148999999996543
Q ss_pred ccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--------------
Q 016700 246 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------- 311 (384)
Q Consensus 246 ~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~-------------- 311 (384)
.+ ..+.+..||++|+|+|+++....+.+..|. .+.. .+.|+++|+||+|+...
T Consensus 85 ~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~-----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 85 TL-------RKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp TS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH-----cCCeEEEEecccccccccccccCCchHHHHH
Confidence 22 234567899999999999866556555443 4443 36899999999998641
Q ss_pred ---HH-------HHHHHHHHHHhc-----------------CCcccccccccCHHHHHHHHHhcc
Q 016700 312 ---RD-------RLQSLTEEILKI-----------------GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 312 ---~e-------~~~~l~~~~~~~-----------------~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+ .+.++.+.+... .+.++|+.++.|+++++++|...+
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 11 111223333322 244689999999999999988654
No 180
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=4.7e-14 Score=140.32 Aligned_cols=101 Identities=33% Similarity=0.525 Sum_probs=83.2
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCC--------Cc-cccCCceEEEeCCCCc
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLI 242 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~--------~~-~~~~~~i~i~DtPG~~ 242 (384)
++...+|+|+|+||||||||+|+|++... .++++||||++|+.|.+...+.. .. ......+.++||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34456899999999999999999999887 67999999999999988654200 00 0001247999999999
Q ss_pred cccccccchhHHHHHHcccCCeEEEEeeCCC
Q 016700 243 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 273 (384)
Q Consensus 243 ~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~ 273 (384)
.+++.+++++..|+.+++.+|++++|+|+++
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988889999999999999999999999875
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.49 E-value=2.5e-13 Score=149.22 Aligned_cols=155 Identities=19% Similarity=0.142 Sum_probs=100.4
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC-----C-----------ccCCCCceeecceEEecCCCCCCccccCCceEEEeC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP-----D-----------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~-----~-----------ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~Dt 238 (384)
...+|+++|.+++|||||+++|++... . .....+.|++.....+... ...+.||||
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IIDT 366 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVDC 366 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEEC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEEC
Confidence 447899999999999999999986310 0 0112333443332223222 237999999
Q ss_pred CCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHH--
Q 016700 239 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL-- 315 (384)
Q Consensus 239 PG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl~~~~e~~-- 315 (384)
||+.+ +.......+..+|++|+|||+++....+..+ ++..+.. .+.| +|+|+||+|+...++..
T Consensus 367 PGHed-------F~~~mi~gas~AD~aILVVDAtdGv~~QTrE-hL~ll~~-----lgIP~IIVVINKiDLv~d~e~le~ 433 (1289)
T 3avx_A 367 PGHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLGRQ-----VGVPYIIVFLNKCDMVDDEELLEL 433 (1289)
T ss_dssp CCHHH-------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHH-HHHHHHH-----HTCSCEEEEEECCTTCCCHHHHHH
T ss_pred CChHH-------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHH-HHHHHHH-----cCCCeEEEEEeecccccchhhHHH
Confidence 99954 4556677789999999999999865544443 3344443 2577 78999999998643332
Q ss_pred --HHHHHHHHhcC-------Ccccccccc--------cCHHHHHHHHHhccC
Q 016700 316 --QSLTEEILKIG-------CDKVTSETE--------LSSEDAVKSLSTEGG 350 (384)
Q Consensus 316 --~~l~~~~~~~~-------~~~~sa~t~--------~gv~e~l~~l~~~~~ 350 (384)
+++.+.+...+ +.++|+.++ .++.++++.|...+.
T Consensus 434 i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 434 VEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 34445555544 346788877 468888888887654
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.49 E-value=1.4e-13 Score=146.45 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=80.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC------Cc------cC------CCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP------DI------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~------~i------a~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
+.+.+|+|+|.+|+|||||+++|+.... .+ .+ ....|+......+.+.. ..++|
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--------~~i~l 81 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--------HRINI 81 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--------EEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--------eEEEE
Confidence 4567899999999999999999983210 01 11 23445444444443322 37999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
|||||+.+ +...+.+++..||++|+|+|+++....+....|. .+.. .+.|+++|+||+|+...
T Consensus 82 iDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 82 IDTPGHVD-------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ECCCSSTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCEEEEEECTTSTTC
T ss_pred EECcCccc-------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH-----cCCCEEEEEECCCcccC
Confidence 99999954 4566788889999999999999987777665554 3443 36899999999999753
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.48 E-value=4.1e-14 Score=144.10 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=82.9
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-------------------------c------CCCCceeecceEEecCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------A------DYPFTTLMPNLGRLDGDP 222 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-------------------------a------~~~~tT~~p~~g~v~~~~ 222 (384)
+...+|+++|.+++|||||+++|+.....+ . ...++|++.....+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 556799999999999999999997422111 0 012344444433343321
Q ss_pred CCCccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCC---H---hHHHHHHHHHHhcCCCCCC
Q 016700 223 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP---V---NDYRTVKEELRMYNPDYLE 296 (384)
Q Consensus 223 ~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~---~---~~~~~l~~eL~~~~~~l~~ 296 (384)
..+.||||||+.+ +...+...+..+|++|+|||+++... + .+....+..+.. .+
T Consensus 121 --------~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-----~~ 180 (467)
T 1r5b_A 121 --------RRFSLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-----QG 180 (467)
T ss_dssp --------EEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-----TT
T ss_pred --------eEEEEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-----cC
Confidence 3799999999954 44556777889999999999987521 1 111112222222 35
Q ss_pred CC-EEEEEeCCCCCCh---HHH----HHHHHHHHHhc---------CCcccccccccCHHHHH
Q 016700 297 RP-FIVVLNKIDLPEA---RDR----LQSLTEEILKI---------GCDKVTSETELSSEDAV 342 (384)
Q Consensus 297 ~p-~ivV~NK~Dl~~~---~e~----~~~l~~~~~~~---------~~~~~sa~t~~gv~e~l 342 (384)
.| +++|+||+|+... ++. .+++.+.+..+ .+.++|+.++.++.+++
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 66 9999999999641 222 23344444433 24577888888887643
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.47 E-value=3.9e-13 Score=138.84 Aligned_cols=130 Identities=20% Similarity=0.276 Sum_probs=84.6
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCCCCc----------------c------CCCCceeecceEEecCCCCCCcccc
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------A------DYPFTTLMPNLGRLDGDPTLGAEKY 229 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i----------------a------~~~~tT~~p~~g~v~~~~~~~~~~~ 229 (384)
+++...+|+|+|.+|||||||+++|+.....+ . ...+.|+......+.+.
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------- 80 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH-------- 80 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence 45667899999999999999999998643221 0 01122332222333322
Q ss_pred CCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 230 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 230 ~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
...+.||||||+.+ +...+.+++..+|++|+|+|+++....+. ..++..+.. .+.|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-----~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHED-------FSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-----RDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChh-------HHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence 13799999999954 44567788999999999999998654433 333333332 368999999999997
Q ss_pred ChH--HHHHHHHHHH
Q 016700 310 EAR--DRLQSLTEEI 322 (384)
Q Consensus 310 ~~~--e~~~~l~~~~ 322 (384)
... +.++++.+.+
T Consensus 148 ~~~~~~~~~~i~~~l 162 (529)
T 2h5e_A 148 IRDPMELLDEVENEL 162 (529)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHh
Confidence 542 3344454443
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=135.73 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=72.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCC-------CceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc-
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 248 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~-------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~- 248 (384)
.+|+|+|.+|+|||||+++|.+.......+. ..|.......+.... ......+++|||||+.+.....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~----~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE----RGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC--------CEEEEEEEEC------------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec----CCcccceEEEEeccccccCccHH
Confidence 6899999999999999999987654332221 123222221221110 0011268999999995432111
Q ss_pred --cchhH----HHHHHcc-------------cCCeEEEEeeCCCCCCHhHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 249 --KGLGR----NFLRHLR-------------RTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 249 --~gl~~----~fl~~i~-------------~ad~il~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
..+.. .|..++. ++|+++|+||.+. .++.... .+...+ . ...|+|+|+||+|+
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-~~l~~~d~~~~~~l---~---~~~piIlV~NK~Dl 186 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H---NKVNIVPVIAKADT 186 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-SSCCHHHHHHHHHT---C---S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-CCcchhHHHHHHHh---c---cCCCEEEEEECCCC
Confidence 12222 2223332 2356788887633 2223222 233333 2 36899999999999
Q ss_pred CChHHHHH---HHHHHHHhc--CCcccccccccCHHHHHHHHHhcc
Q 016700 309 PEARDRLQ---SLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 309 ~~~~e~~~---~l~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
....+... .+.+.+... .+.++|+.++.+ ++.+.++...+
T Consensus 187 ~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 187 LTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 87654322 333334333 345677777776 55555555443
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.44 E-value=3.4e-13 Score=143.57 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=85.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC------------ccC------CCCceeecceEEecCCCCCCccccCCceEEE
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD------------IAD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 236 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~------------ia~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~ 236 (384)
.+.+|+|+|.+|+|||||+++|+..... +.+ .+++|+......+.+.. ..++||
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--------~~i~li 80 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--------HRVNII 80 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--------EEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--------eeEEEE
Confidence 4578999999999999999999842111 111 23455555554444332 379999
Q ss_pred eCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHH
Q 016700 237 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDR 314 (384)
Q Consensus 237 DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~e~ 314 (384)
||||+.+ +...+.+++..||++|+|+|+++....++...|. .+.. .+.|+++|+||+|+... .+.
T Consensus 81 DTPG~~d-------f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~-----~~~p~ilviNK~Dl~~~~~~~~ 147 (693)
T 2xex_A 81 DTPGHVD-------FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT-----YGVPRIVFVNKMDKLGANFEYS 147 (693)
T ss_dssp CCCCCSS-------CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH-----TTCCEEEEEECTTSTTCCHHHH
T ss_pred ECcCCcc-------hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH-----cCCCEEEEEECCCccccchHHH
Confidence 9999954 4556778889999999999999877776655544 4444 36899999999999764 233
Q ss_pred HHHHHHHH
Q 016700 315 LQSLTEEI 322 (384)
Q Consensus 315 ~~~l~~~~ 322 (384)
++.+.+.+
T Consensus 148 ~~~l~~~l 155 (693)
T 2xex_A 148 VSTLHDRL 155 (693)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 187
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.43 E-value=1.5e-13 Score=146.41 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=101.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCCCC----------C--------------------
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT----------L-------------------- 224 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~~~----------~-------------------- 224 (384)
.+++|+|+|.+|+|||||+|+|++...-......+|..|..-.+...+. .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999997642211123343332111100000 0
Q ss_pred ------C--------ccccCCceEEEeCCCCcccccc--c----cchhHHHHHHc-ccCCeEEEEeeCCCCCCHhHHHHH
Q 016700 225 ------G--------AEKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRTV 283 (384)
Q Consensus 225 ------~--------~~~~~~~i~i~DtPG~~~~a~~--~----~gl~~~fl~~i-~~ad~il~VvD~s~~~~~~~~~~l 283 (384)
. .......++|+||||+...... . ..+......++ ..+|++|+|+|++.....++...+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0 0001135899999999873311 1 12333444444 578999999999875544454345
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH-HHHh--cC---CcccccccccCHHHHHHHHHhc
Q 016700 284 KEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EILK--IG---CDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 284 ~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~-~~~~--~~---~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
..++.. .++|+++|+||+|+....+....+.+ .+.. .+ +..+|+.++.|++++++.+.++
T Consensus 210 l~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 AKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 455543 36899999999999864332222221 0100 12 3467899999999998888763
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=135.28 Aligned_cols=98 Identities=9% Similarity=0.066 Sum_probs=59.9
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+||||+... .....+.+|++++|+|++..+..+. +... +...|.++|+||+|+...
T Consensus 168 ~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~~~~~~---i~~~-------il~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 168 DIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGGDELQG---IKRG-------IIEMADLVAVTKSDGDLI 227 (349)
T ss_dssp SEEEEECCCC--C----------HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGH
T ss_pred CEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcchhHHH---hHHH-------HHhcCCEEEEeeecCCCc
Confidence 7899999998532 1233578999999999986532221 1111 135688999999999753
Q ss_pred HH---HHHHHHHHHHh---------cCCcccccccccCHHHHHHHHHhcc
Q 016700 312 RD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 312 ~e---~~~~l~~~~~~---------~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.. ....+...+.. ..+..+|+.++.|+++++++|.+..
T Consensus 228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 228 VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 22 12223322211 1134579999999999999998765
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.42 E-value=1.8e-12 Score=138.11 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=81.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCC------c------cC------CCCceeecceEEecCCCCCCccccCCceEE
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~------i------a~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i 235 (384)
+.+.+|+|+|.+|+|||||+++|+...-. + .+ ..+.|+......+.+.... ...-...+.|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA-KQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc-ccCCceeEEE
Confidence 34678999999999999999999743211 1 11 1233443333333322100 0000137999
Q ss_pred EeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 236 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 236 ~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
|||||+.+ +...+.+++..||++|+|+|+++....+....| ..+.. .+.|+++|+||+|+...
T Consensus 87 iDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVD-------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccc-------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEeCCCcccc
Confidence 99999954 445667788899999999999987665554444 33333 36899999999998753
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.42 E-value=4.2e-13 Score=131.87 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=67.7
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
..++|+||||+.+ .....++.+|++|+|+|++..+..+.+. ..+.+.|.++|+||+|+..
T Consensus 172 ~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~~~~~l~----------~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 172 FDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGDQLQGIK----------KGVLELADIVVVNKADGEH 231 (355)
T ss_dssp CCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTCTTTTCC----------TTSGGGCSEEEEECCCGGG
T ss_pred CCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCccHHHHH----------HhHhhcCCEEEEECCCCcC
Confidence 3799999999743 2223358899999999987654332211 1223579999999999975
Q ss_pred hHH---HHHHHHHHHHh---------cCCcccccccccCHHHHHHHHHhccC
Q 016700 311 ARD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 311 ~~e---~~~~l~~~~~~---------~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
... ..+.+.+.+.. ..+..+|+.++.|+++++++|.+.+.
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 232 HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 432 12233333321 23557899999999999999987653
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.41 E-value=1.8e-12 Score=137.43 Aligned_cols=116 Identities=24% Similarity=0.225 Sum_probs=79.8
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCCCCc------------cCC------CCceeecceEEecCCCCCCccccCCceE
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI------------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEAT 234 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~~~i------------a~~------~~tT~~p~~g~v~~~~~~~~~~~~~~i~ 234 (384)
++...+|+|+|.+|+|||||+++|++....+ .++ .+.|.......+... ...+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~n 77 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVF 77 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEE
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEE
Confidence 3456789999999999999999998433211 110 122333333333322 12689
Q ss_pred EEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 235 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
||||||+.+ +...+.+++..+|++++|+|+++....+.. .++..+.. .+.|+++|+||+|+.
T Consensus 78 liDTpG~~~-------f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 78 LLDAPGYGD-------FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEECCCSGG-------GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred EEeCCCccc-------hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-----ccCCEEEEecCCchh
Confidence 999999854 455677888999999999998876555443 34445544 368999999999986
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.37 E-value=8.1e-12 Score=129.49 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=90.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCCC----------------Cc------cCCCCceeecceEEecCCCCCCc
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAKP----------------DI------ADYPFTTLMPNLGRLDGDPTLGA 226 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~----------------~i------a~~~~tT~~p~~g~v~~~~~~~~ 226 (384)
+.-+...+..|+|+|...+|||||..+|+-..- .+ ...-+.|+......+.+..
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---- 99 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---- 99 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT----
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC----
Confidence 444677788999999999999999999962211 11 1122334444444444432
Q ss_pred cccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 227 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 227 ~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
..+.|+||||+.+ |.....+.++-||.+|+|||+......+....| ..+.. .+.|+++++||+
T Consensus 100 ----~~iNlIDTPGHvD-------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~-----~~lp~i~fINK~ 162 (548)
T 3vqt_A 100 ----RVVNLLDTPGHQD-------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM-----RATPVMTFVNKM 162 (548)
T ss_dssp ----EEEEEECCCCGGG-------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH-----TTCCEEEEEECT
T ss_pred ----EEEEEEeCCCcHH-------HHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH-----hCCceEEEEecc
Confidence 3799999999976 556678889999999999999987776665555 44444 369999999999
Q ss_pred CCCCh--HHHHHHHHHH
Q 016700 307 DLPEA--RDRLQSLTEE 321 (384)
Q Consensus 307 Dl~~~--~e~~~~l~~~ 321 (384)
|...+ .+.++++.+.
T Consensus 163 Dr~~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 163 DREALHPLDVMADIEQH 179 (548)
T ss_dssp TSCCCCHHHHHHHHHHH
T ss_pred cchhcchhHhhhhhhhh
Confidence 98753 3344444443
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.34 E-value=2.5e-12 Score=125.61 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=88.9
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcC------CCCc-cCCCCceee-----------------cceEEecCC--CCCC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYPFTTLM-----------------PNLGRLDGD--PTLG 225 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~------~~~i-a~~~~tT~~-----------------p~~g~v~~~--~~~~ 225 (384)
.......|+++|+||+|||||++.|++. +..+ ...+++|.. +........ ....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence 3445678999999999999999999742 2222 233333321 100000000 0000
Q ss_pred c----------c--ccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC
Q 016700 226 A----------E--KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 293 (384)
Q Consensus 226 ~----------~--~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~ 293 (384)
. . ..+..++|+||||+.+.. . ..+..+|++|+|+|++..+..+.+. ...
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~-------~---~~~~~aD~vl~Vvd~~~~~~~~~l~---~~~------ 192 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSE-------T---EVARMVDCFISLQIAGGGDDLQGIK---KGL------ 192 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH-------H---HHHTTCSEEEEEECC------CCCC---HHH------
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchH-------H---HHHHhCCEEEEEEeCCccHHHHHHH---Hhh------
Confidence 0 0 012379999999986421 1 1357899999999997643221111 111
Q ss_pred CCCCCEEEEEeCCCCCChHHH---HHHHHHHHHhcC---------CcccccccccCHHHHHHHHHhcc
Q 016700 294 YLERPFIVVLNKIDLPEARDR---LQSLTEEILKIG---------CDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 294 l~~~p~ivV~NK~Dl~~~~e~---~~~l~~~~~~~~---------~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.|.++|+||+|+....+. .+.+.+.+..+. +.++|+.++.|++++++.|.+.+
T Consensus 193 -~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 193 -MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp -HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 13688999999999864332 123333333222 23678889999999999998765
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.33 E-value=1.6e-12 Score=141.21 Aligned_cols=121 Identities=22% Similarity=0.213 Sum_probs=81.4
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCCCc-cC---------------CCCceeecceEEecCCC----------CCCcc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDP----------TLGAE 227 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~~i-a~---------------~~~tT~~p~~g~v~~~~----------~~~~~ 227 (384)
..+.+|+|+|.+|+|||||+++|+.....+ .. ....|+......+.+.. .....
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456789999999999999999998642211 10 12223333222222210 00000
Q ss_pred ccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 228 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 228 ~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
...+.||||||+.+ +...+.++++.||++|+|+|+++....++...|...+. .+.|+++|+||+|
T Consensus 97 --~~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 --SFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVD 161 (842)
T ss_dssp --EEEEEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHH
T ss_pred --CceEEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCeEEEEECCC
Confidence 23689999999965 45567788899999999999999877777665554332 3589999999999
Q ss_pred CC
Q 016700 308 LP 309 (384)
Q Consensus 308 l~ 309 (384)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 195
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.29 E-value=3.1e-13 Score=133.65 Aligned_cols=119 Identities=24% Similarity=0.212 Sum_probs=85.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC------CCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 249 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~------~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~ 249 (384)
..+|+++|.||+|||||+|+|++. ...++++|+||..+....+. ..+.++||||+.+......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~ 230 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMAH 230 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGGG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHHH
Confidence 457999999999999999999986 45568899999987765432 2589999999987654455
Q ss_pred chhHHHHHHc---ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 250 GLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 250 gl~~~fl~~i---~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.+....+.++ .+.+.++|++|+........+.. +.... ..+.|+++++||+|....
T Consensus 231 ~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~--~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 231 FVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIK--GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp GSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE--SSSEEEEEEECTTSCEEE
T ss_pred HHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEcc--CCCceEEEEecCCccccc
Confidence 5666667777 88999999999843211111100 11111 135799999999998643
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.28 E-value=7.5e-12 Score=113.37 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=92.5
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCC-----CC-ccCCCCceeecc------e--EEecCCCCCCc----------cc
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPN------L--GRLDGDPTLGA----------EK 228 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~-----~~-ia~~~~tT~~p~------~--g~v~~~~~~~~----------~~ 228 (384)
.+..+.|+|+|++|||||||+++|+... .. +...+++|.+.. . ..+........ ..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 3456789999999999999999998641 11 122233332111 0 11111100000 01
Q ss_pred cCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 229 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 229 ~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
....+++|||||+...... + -..++.+++|+|++..... .. ..... ...|.++|+||+|+
T Consensus 107 ~~~d~iiidt~G~~~~~~~-------~---~~~~~~~i~vvd~~~~~~~--~~---~~~~~-----~~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVD-------F---DLGENYRVVMVSVTEGDDV--VE---KHPEI-----FRVADLIVINKVAL 166 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGG-------C---CCSCSEEEEEEEGGGCTTH--HH---HCHHH-----HHTCSEEEEECGGG
T ss_pred CCCCEEEEeCCCCCCCCch-------h---ccccCcEEEEEeCCCcchh--hh---hhhhh-----hhcCCEEEEecccC
Confidence 1237899999996221100 0 0246789999999865321 11 11111 14789999999998
Q ss_pred CChH-HHHHHHHHHHHhc----CCcccccccccCHHHHHHHHHhccCc
Q 016700 309 PEAR-DRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLSTEGGE 351 (384)
Q Consensus 309 ~~~~-e~~~~l~~~~~~~----~~~~~sa~t~~gv~e~l~~l~~~~~~ 351 (384)
.... ...+.+.+.+... .+.++|+.++.++++++++|.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 167 AEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 6431 1234444444432 34578999999999999999877643
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.27 E-value=7.2e-12 Score=116.61 Aligned_cols=113 Identities=22% Similarity=0.233 Sum_probs=70.6
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHH-HHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~-eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.++|+||||+.+.... ..+...+.+++.. +++++|+|++......++..... .+.... ..+.|+++|+||+|+..
T Consensus 110 d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp SEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 7999999999764322 1234445566777 89999999876544443322211 111000 12589999999999976
Q ss_pred hHHHHHHHHH----------H------------------HHhc----CCcccccccccCHHHHHHHHHhcc
Q 016700 311 ARDRLQSLTE----------E------------------ILKI----GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 311 ~~e~~~~l~~----------~------------------~~~~----~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
..+ .+++.+ . +..+ .+.++|+.++.++++++++|.+.+
T Consensus 186 ~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 186 EEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 432 111111 1 1221 456789999999999999988655
No 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.23 E-value=2.1e-12 Score=127.64 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=79.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC-------CCCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA-------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 248 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~-------~~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~ 248 (384)
..+|+++|.||+|||||+|+|++. ...++++|+||.......+. ..+.++||||+.+.....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQMA 228 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSGG
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHHH
Confidence 468999999999999999999975 23358899999887665432 258999999998765444
Q ss_pred cchhHHHHHH---cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH
Q 016700 249 KGLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 312 (384)
Q Consensus 249 ~gl~~~fl~~---i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~ 312 (384)
..+....+++ ..+.+.++|++|.........+.. .+.+. ..+.|+++|+||+|.....
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~-----~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS-----GGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec-----CCCceEEEEecCccccccc
Confidence 4555566665 467889999999743111111100 01111 1358999999999987543
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=3e-11 Score=117.93 Aligned_cols=161 Identities=18% Similarity=0.184 Sum_probs=88.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHc------CCCCc-cCCCCcee-----------------ecceEEecCC--C
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITH------AKPDI-ADYPFTTL-----------------MPNLGRLDGD--P 222 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~------~~~~i-a~~~~tT~-----------------~p~~g~v~~~--~ 222 (384)
+.+.+.....|+|+|+||||||||+++|.+ .+..+ +..+.++. ++........ +
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 127 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG 127 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccc
Confidence 334455667899999999999999999984 23222 21221111 0111000000 0
Q ss_pred CCC------------ccccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhc
Q 016700 223 TLG------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 290 (384)
Q Consensus 223 ~~~------------~~~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~ 290 (384)
... ....+..++|+||||+.+.. ....+.+|++++|+|++..+..+. +...+
T Consensus 128 ~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~~~~---i~~~i--- 191 (337)
T 2qm8_A 128 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDELQG---IKKGI--- 191 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH---
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCcccHHH---HHHHH---
Confidence 000 00012379999999996531 122478999999999864322111 11111
Q ss_pred CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh----c---------CCcccccccccCHHHHHHHHHhcc
Q 016700 291 NPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----I---------GCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 291 ~~~l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~----~---------~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
...+.++|+||+|+....+......+.+.. + .+..+|+.++.|++++++.|.+..
T Consensus 192 ----~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 192 ----FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ----HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 124568888999975433322222222211 1 233578999999999999887754
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.23 E-value=3.9e-11 Score=115.23 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=75.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-cCCCC------ceee-cceEEecCCCCCCccccCCceEEEeCCCCcccccc-
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF------TTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL- 247 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a~~~~------tT~~-p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~- 247 (384)
.+|+|+|.+|||||||+++|.+..... ...++ .|.. ...+.+.... .....+++|||||+......
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~-----~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER-----GVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--------CCEEEEEEEEC---------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC-----CcccCcchhhhhhhhhhcCcH
Confidence 578999999999999999998753221 11110 1111 1112211110 11236899999998432100
Q ss_pred --ccchhH-------HHHHHc----------ccCCeEEEEeeCCCC-CCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 248 --GKGLGR-------NFLRHL----------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 248 --~~gl~~-------~fl~~i----------~~ad~il~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
-..+.. .+.+.+ .+++++||+++.+.. -...+. +.+.... ...|+++|+||+|
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~---~~~~iilV~~K~D 166 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH---NKVNIVPVIAKAD 166 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT---TTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH---hcCCEEEEEEeCC
Confidence 011221 222222 234557777775432 222222 2333332 2479999999999
Q ss_pred CCChHHH---HHHHHHHHHhcC--CcccccccccCHHHHHHHHHhccC
Q 016700 308 LPEARDR---LQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 308 l~~~~e~---~~~l~~~~~~~~--~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
+....+. .+++.+.+...+ +.++|+.++ +++++|..++..+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 9865432 234444455444 557888899 99999988887653
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.22 E-value=4.3e-11 Score=126.22 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=78.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC---CCC---c------cCCC------CceeecceEEecCCCCCCccccCCceEEEe
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA---KPD---I------ADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~---~~~---i------a~~~------~tT~~p~~g~v~~~~~~~~~~~~~~i~i~D 237 (384)
|.+|+|+|...+|||||..+|... -.. + .++. +.|+......+.+. +..++|+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------~~~iNlID 73 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------NTKVNIID 73 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--------SCBCCCEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--------CEEEEEEE
Confidence 457999999999999999998632 111 1 1110 22332222223222 23799999
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
|||+.+ |.....+.++-||.+|+|||+...-..+....| ..+..+ +.|.++++||+|.+.
T Consensus 74 TPGH~D-------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~-----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 74 TPGHMD-------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM-----GIPTIFFINKIDQNG 133 (638)
T ss_dssp CCCSSS-------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH-----TCSCEECCEECCSSS
T ss_pred CCCcHH-------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc-----CCCeEEEEecccccc
Confidence 999965 566778889999999999999987666654444 444443 588999999999864
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.8e-10 Score=115.58 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=72.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCCcee--ecce--EEecCCCCCCccccCCceEEEeCCCCcccccccc---
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--- 249 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~--~p~~--g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~--- 249 (384)
.+|+|+|.+|||||||+++|++.......+...+. .+.. ..+.+... .......+++|||||+........
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q--~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK--EGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------CEEEEEEECC-----------CH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe--cCCcccceeeeechhhhhhccchhhHH
Confidence 46799999999999999999987642211111110 0111 11111100 001123689999999965321100
Q ss_pred ch----hHHHHHH-----------c--ccCCeEEEEeeCC-CCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 250 GL----GRNFLRH-----------L--RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 250 gl----~~~fl~~-----------i--~~ad~il~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.+ ...+..+ + .+++++||+++.+ ......+. .+...|. ...|+|+|+||+|+...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccCccH
Confidence 00 0111111 2 2345677777765 23333332 3444553 25899999999999875
Q ss_pred HHHH---HHHHHHHHhc--CCcccccccccCHHHHHHHHHhccC
Q 016700 312 RDRL---QSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 312 ~e~~---~~l~~~~~~~--~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
.+.. +.+.+.+... .+..+++.+..++++.+..+...+.
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 4422 3344444443 4556777888888887777776543
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.07 E-value=8.6e-10 Score=117.68 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=86.3
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcCC------CCc------cC------CCCceeecceEEecCCCCCCccccCCceE
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHAK------PDI------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEAT 234 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~~------~~i------a~------~~~tT~~p~~g~v~~~~~~~~~~~~~~i~ 234 (384)
+..+..|+|+|...+|||||..+|.... ..+ .+ .-+.|+....-.+.+.... ...-...++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~-~~~~~~~iN 88 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR-GQYDNYRVN 88 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT-SCSCCEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc-CCCCCEEEE
Confidence 4567789999999999999999986321 011 11 1122332222223221100 000013699
Q ss_pred EEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--H
Q 016700 235 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--R 312 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~--~ 312 (384)
|+||||+.+ |.....+.++-||.+|+|||+...-..+....|...+. .+.|.++++||+|.... .
T Consensus 89 lIDTPGHvD-------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~a~~~ 155 (709)
T 4fn5_A 89 VIDTPGHVD-------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK------YGVPRIVYVNKMDRQGANFL 155 (709)
T ss_dssp EECCCSCTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH------HTCCEEEEEECSSSTTCCHH
T ss_pred EEeCCCCcc-------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEccccccCccHH
Confidence 999999976 56667888899999999999998877777665655444 26899999999998754 3
Q ss_pred HHHHHHHHHH
Q 016700 313 DRLQSLTEEI 322 (384)
Q Consensus 313 e~~~~l~~~~ 322 (384)
..++++.+.+
T Consensus 156 ~~~~ei~~~l 165 (709)
T 4fn5_A 156 RVVEQIKKRL 165 (709)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhc
Confidence 3445555444
No 204
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.04 E-value=5.2e-10 Score=109.10 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=53.8
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCC----------CCCCHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.||||+|+ +.+...|..+++.++++|||+|++ +..++.+...++..+... +.+.+.|+++
T Consensus 162 ~l~iwDtaGQ-------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~-~~~~~~piiL 233 (340)
T 4fid_A 162 PFHLIDVGGQ-------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN-EFLKGAVKLI 233 (340)
T ss_dssp EEEEEECCSC-------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC-GGGTTSEEEE
T ss_pred eeccccCCCc-------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh-hccCCCeEEE
Confidence 5899999998 446778888999999999999998 344455555555555432 2235689999
Q ss_pred EEeCCCCCC
Q 016700 302 VLNKIDLPE 310 (384)
Q Consensus 302 V~NK~Dl~~ 310 (384)
++||+|+..
T Consensus 234 v~NK~DL~~ 242 (340)
T 4fid_A 234 FLNKMDLFE 242 (340)
T ss_dssp EEECHHHHH
T ss_pred EEECchhhh
Confidence 999999864
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=1.5e-09 Score=98.42 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=85.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC------CccCCCCceeec--------ceEEecCCCCCCc------------c
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMP--------NLGRLDGDPTLGA------------E 227 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~------~ia~~~~tT~~p--------~~g~v~~~~~~~~------------~ 227 (384)
+...+|+|+|.+|||||||+++|+.... .+...+.++.+. ..-.+........ .
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 4568999999999999999999986521 111111111110 0111110000000 0
Q ss_pred ccCCceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 228 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 228 ~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
.....+.++|++|.+.... .| -...+.++.|+|+.... ....+. .+ ...|.++|+||+
T Consensus 116 ~~~~d~~~id~~g~i~~~~-------s~---~~~~~~~~~v~~~~~~~~~~~~~~----~~-------~~~~~iiv~NK~ 174 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA-------DF---DLGTHKRIVVISTTEGDDTIEKHP----GI-------MKTADLIVINKI 174 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG-------GC---CCSCSEEEEEEEGGGCTTTTTTCH----HH-------HTTCSEEEEECG
T ss_pred cCCCCEEEEeCCCCccCcc-------hh---hhccCcEEEEEecCcchhhHhhhh----hH-------hhcCCEEEEecc
Confidence 0112688999999643210 11 12345667888864321 111111 11 147899999999
Q ss_pred CCCChH-HHHHHHHHHHHh----cCCcccccccccCHHHHHHHHHhcc
Q 016700 307 DLPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 307 Dl~~~~-e~~~~l~~~~~~----~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
|+.... ...+++.+.+.. ..+.++|+.++.+++++++.|.+.+
T Consensus 175 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 175 DLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp GGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 986432 123444444443 2355789999999999999988654
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.82 E-value=8.5e-10 Score=105.01 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=38.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC-CCccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~-~~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
..+|+++|.||||||||+|+|++.+ ..+++.|++|.......+ ...+.++||||+....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCC
Confidence 4579999999999999999999987 456889999987764333 2378999999998653
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.81 E-value=1.9e-08 Score=95.02 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=76.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCc-c-------CCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 248 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~i-a-------~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~ 248 (384)
..|+|+|++|||||||+|.|++..... + +.+.++....++.+.... .+...++++|+||+.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccH
Confidence 469999999999999999999754221 1 122222223333332211 122368999999986432211
Q ss_pred c---c----hhHHHHHH--------------cccCCeEEEEeeCC-CCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 249 K---G----LGRNFLRH--------------LRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 249 ~---g----l~~~fl~~--------------i~~ad~il~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
. . +...+..+ +.+++++++++|.. .+....+.. +...|.. ..++|+|+||+
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~-~l~~L~~------~~~vI~Vi~K~ 150 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE-FMKHLSK------VVNIIPVIAKA 150 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-HHHHHHT------TSEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-HHHHHHh------cCcEEEEEecc
Confidence 1 0 11112111 23578899999965 444444543 3344542 27899999999
Q ss_pred CCCChHHH---HHHHHHHHHhcCCc
Q 016700 307 DLPEARDR---LQSLTEEILKIGCD 328 (384)
Q Consensus 307 Dl~~~~e~---~~~l~~~~~~~~~~ 328 (384)
|.....+. .+.+.+.+...++.
T Consensus 151 D~lt~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99875442 22333444544443
No 208
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.79 E-value=1.4e-09 Score=106.69 Aligned_cols=111 Identities=10% Similarity=0.113 Sum_probs=77.5
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC----------CHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.||||+|+. .+...|..+++.++++|||+|+++.+ ++++...+++.+... +.+.+.|+|+
T Consensus 194 ~l~iwDt~GQe-------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~-~~~~~~piiL 265 (353)
T 1cip_A 194 HFKMFDVGGQR-------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWFTDTSIIL 265 (353)
T ss_dssp EEEEEEECCSG-------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEE
T ss_pred eEEEEeCCCch-------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC-ccccCCcEEE
Confidence 68999999984 45667778899999999999999843 355555555555432 1234689999
Q ss_pred EEeCCCCCChH----------------HHHHHHHHHHH----h---------cCCcccccccccCHHHHHHHHHhccC
Q 016700 302 VLNKIDLPEAR----------------DRLQSLTEEIL----K---------IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 302 V~NK~Dl~~~~----------------e~~~~l~~~~~----~---------~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
|+||+|+.... ...++..+.+. . +.+.+++|.++.+++++|+++.+.+.
T Consensus 266 v~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 266 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 99999985211 01222222222 1 23457899999999999999987653
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=2.5e-08 Score=95.48 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=74.7
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.+.|||| +.. +...+..+++.+|++|+|+|++++. +++.+..|+.++.. .+.|+++|+||+||..
T Consensus 64 ~~~iwD~--qer-------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHR-------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCC-------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccc-------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 6899999 322 2222235689999999999999876 56777777777664 3689999999999986
Q ss_pred hHHH--HHHHHHHHHh-cCCcccccccccCHHHHHHHHHhc
Q 016700 311 ARDR--LQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 311 ~~e~--~~~l~~~~~~-~~~~~~sa~t~~gv~e~l~~l~~~ 348 (384)
..+. .+.+.+.+.. ..+.++||+++.++++++..+...
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 5432 2333333332 456689999999999999887654
No 210
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.70 E-value=3.4e-09 Score=104.34 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=72.3
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.||||+|+. .+...|..+++.++++|||+|+++ ..++.+...++..+... +.+.+.|+|+
T Consensus 202 ~l~i~Dt~Gq~-------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~~~~~~piIL 273 (362)
T 1zcb_A 202 PFKMVDVGGQR-------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSIIL 273 (362)
T ss_dssp EEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEE
T ss_pred EEEEEeccchh-------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-hhhCCCCEEE
Confidence 68999999984 345566777899999999999998 34555555566665532 1234689999
Q ss_pred EEeCCCCCChH-----------------HHHHHHHHH----HH---------hcCCcccccccccCHHHHHHHHHhcc
Q 016700 302 VLNKIDLPEAR-----------------DRLQSLTEE----IL---------KIGCDKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 302 V~NK~Dl~~~~-----------------e~~~~l~~~----~~---------~~~~~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
|+||+|+.... ...++..+. +. .+.+.+++|.++.+++++|.++.+.+
T Consensus 274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 99999985211 112222222 11 12344789999999999999988765
No 211
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=4.8e-08 Score=97.86 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=74.2
Q ss_pred hhHHhhhcce--EEEEecCCCcHHHHHHHHHcCCCC---ccC-CCCceeecceEEecCCCCCCccccCCceEEEeCCCCc
Q 016700 169 LELILRVVAD--VGLVGLPNAGKSTLLAAITHAKPD---IAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 242 (384)
Q Consensus 169 ~~l~lk~~~~--V~lvG~pnaGKSSLln~L~~~~~~---ia~-~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~ 242 (384)
+.+.++.... |+|+|.+|||||||+|.|++.... +.. .+..+.. .++.+.... .+...++++|+||+.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~-----~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQES-----NVRLKLTIVSTVGFG 106 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecC-----ccccccchhhhhhhh
Confidence 4445555555 999999999999999999987421 111 2333333 233332111 011368999999986
Q ss_pred cccccc-------cchhHHHHHHc-------------ccC--C-eEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCE
Q 016700 243 EGAHLG-------KGLGRNFLRHL-------------RRT--R-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF 299 (384)
Q Consensus 243 ~~a~~~-------~gl~~~fl~~i-------------~~a--d-~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ 299 (384)
...... ..+...|..++ ..+ | +++||+|+.......++..+ ..|. ...|+
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieil-k~L~------~~~~v 179 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTM-KKLD------SKVNI 179 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHH-HHTC------SCSEE
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHH-HHHh------hCCCE
Confidence 431100 00112221111 122 2 46677787765555553322 2232 36899
Q ss_pred EEEEeCCCCCChHHHHHHHHHHH
Q 016700 300 IVVLNKIDLPEARDRLQSLTEEI 322 (384)
Q Consensus 300 ivV~NK~Dl~~~~e~~~~l~~~~ 322 (384)
|+|+||+|.....+ ...+.+.+
T Consensus 180 I~Vi~KtD~Lt~~E-~~~l~~~I 201 (427)
T 2qag_B 180 IPIIAKADAISKSE-LTKFKIKI 201 (427)
T ss_dssp EEEESCGGGSCHHH-HHHHHHHH
T ss_pred EEEEcchhccchHH-HHHHHHHH
Confidence 99999999987654 34444433
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.66 E-value=3.2e-08 Score=103.06 Aligned_cols=101 Identities=21% Similarity=0.133 Sum_probs=60.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCCccCCCCceeecceEEecCC-CCCCccccCCceEEEeCCCCccccc-cccchh
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAH-LGKGLG 252 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~tT~~p~~g~v~~~-~~~~~~~~~~~i~i~DtPG~~~~a~-~~~gl~ 252 (384)
....|+|+|.||+|||||+|+|++....+ ++++||...+.+.+.+. +.. ......+.|+||||+.+... ....-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~--~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHP--KKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECS--SSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccc--cCCCceEEEecCCCcCcccccchhHHH
Confidence 34679999999999999999999987544 66777766655554210 000 00123799999999986533 111111
Q ss_pred HHH-HHHcccCCeEEEEeeCCCCCCHhHHH
Q 016700 253 RNF-LRHLRRTRLLVHVIDAAAENPVNDYR 281 (384)
Q Consensus 253 ~~f-l~~i~~ad~il~VvD~s~~~~~~~~~ 281 (384)
..| +..+- ++ ++|||++..-..+++.
T Consensus 114 ~~fala~ll-ss--~lv~n~~~~i~~~dl~ 140 (592)
T 1f5n_A 114 WIFALAVLL-SS--TFVYNSIGTINQQAMD 140 (592)
T ss_dssp HHHHHHHHH-CS--EEEEEEESCSSHHHHH
T ss_pred HHHHHHHHh-cC--eEEEECCCCccHHHHH
Confidence 122 22222 33 5667766654444443
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.64 E-value=6.4e-08 Score=99.06 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=84.0
Q ss_pred cceEEEEecCCCcHHHHHHHHH------cCCCCc-cCCCCc--ee--------ecceEEecCCCCCC-----------cc
Q 016700 176 VADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFT--TL--------MPNLGRLDGDPTLG-----------AE 227 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~------~~~~~i-a~~~~t--T~--------~p~~g~v~~~~~~~-----------~~ 227 (384)
...|+|+|.+||||||+++.|. +.++.+ +.-++. +. ...+..+......+ ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998 555433 110100 00 00011111000000 00
Q ss_pred ccCCceEEEeCCCCccccccccchhHHHHH--HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCE-EEEEe
Q 016700 228 KYSSEATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN 304 (384)
Q Consensus 228 ~~~~~i~i~DtPG~~~~a~~~~gl~~~fl~--~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~-ivV~N 304 (384)
.....++|+||||..... ..+...... .+-.+|.+++|+|++.... .+.. ...+.. ..|+ ++|+|
T Consensus 181 ~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~-a~~~~~------~~~i~gvVlN 248 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQ-AKAFKD------KVDVASVIVT 248 (504)
T ss_dssp HTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHH-HHHHHH------HHCCCCEEEE
T ss_pred HCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccccc--HHHH-HHHHHh------hcCceEEEEe
Confidence 012379999999986421 112211111 1226899999999987532 2222 222322 1564 89999
Q ss_pred CCCCCChHHHHHHHHHHHHh-------------c-CC---cccccccccC-HHHHHHHHHhc
Q 016700 305 KIDLPEARDRLQSLTEEILK-------------I-GC---DKVTSETELS-SEDAVKSLSTE 348 (384)
Q Consensus 305 K~Dl~~~~e~~~~l~~~~~~-------------~-~~---~~~sa~t~~g-v~e~l~~l~~~ 348 (384)
|+|..........+.+.+.. + .+ ..+++..+.+ +.++++.+.+.
T Consensus 249 K~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99987543322223222210 0 01 1345566777 88888888765
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.61 E-value=2.5e-08 Score=99.30 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=77.9
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCC----------CCCHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.||||+|+. .+...|..+++.++++|||+|+++ ..+++....|++++.... ...+.|++|
T Consensus 218 ~l~iwDtaGQe-------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiL 289 (402)
T 1azs_C 218 NFHMFDVGGQR-------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVIL 289 (402)
T ss_dssp EEEEEEECCSG-------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEE
T ss_pred cceecccchhh-------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEE
Confidence 68999999984 356677788899999999999998 566777777777766432 235689999
Q ss_pred EEeCCCCCChHH----------------------------------HHHHH-HHHHHh-----------cCCcccccccc
Q 016700 302 VLNKIDLPEARD----------------------------------RLQSL-TEEILK-----------IGCDKVTSETE 335 (384)
Q Consensus 302 V~NK~Dl~~~~e----------------------------------~~~~l-~~~~~~-----------~~~~~~sa~t~ 335 (384)
|+||+|+..... ....+ .+.+.. +.+.+++|.+.
T Consensus 290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~ 369 (402)
T 1azs_C 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 369 (402)
T ss_dssp EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCH
T ss_pred EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecC
Confidence 999999843211 11111 111111 12347899999
Q ss_pred cCHHHHHHHHHhcc
Q 016700 336 LSSEDAVKSLSTEG 349 (384)
Q Consensus 336 ~gv~e~l~~l~~~~ 349 (384)
.+++++|..+.+.+
T Consensus 370 ~nV~~vF~~v~~~I 383 (402)
T 1azs_C 370 ENIRRVFNDCRDII 383 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999987655
No 215
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.60 E-value=5.7e-08 Score=88.14 Aligned_cols=116 Identities=11% Similarity=-0.023 Sum_probs=67.1
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHh-cCCC--CCCCCEEEEEeCC-C
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPD--YLERPFIVVLNKI-D 307 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~-~~~~--l~~~p~ivV~NK~-D 307 (384)
++....+||-.+ .--...++..|..|++.+|++|||||+++.+..+....+ .+|.. ..++ +.+.|++|.+||. |
T Consensus 97 k~~~~~~~~~~~-~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL-~eL~~mL~ee~~L~gapLLVlANKqqD 174 (227)
T 3l82_B 97 KMFSRHNEGDDQ-QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQG 174 (227)
T ss_dssp ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHH-HHHHHHSCTTSSCSCSCEEEEEEESST
T ss_pred hcccccCCCccc-cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHH-HHHHHHhcchhhhCCCeEEEEeCCCcC
Confidence 455666775211 111245777888999999999999999987655433333 22232 2232 3678999999995 7
Q ss_pred CCChHHHHHHHHHHH------HhcCCcccccccccCHHHHHHHHHhccC
Q 016700 308 LPEARDRLQSLTEEI------LKIGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 308 l~~~~e~~~~l~~~~------~~~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++.+.. ..++.+.+ ..+.+..++|.+++|+.+.++||++.+.
T Consensus 175 lp~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 175 DVKRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TSCBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred ccCCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 865432 22333332 2334568999999999999999997764
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.58 E-value=6.7e-07 Score=89.35 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=85.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCC----Cc-cCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccchh
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 252 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~----~i-a~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl~ 252 (384)
.|+|+|.+|||||||+|+|++... .+ ....-+|.. +.+...+ ....++++|+||+... ....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~------~~~~ltv~D~~g~~~~----~~~~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHP------NIPNVVFWDLPGIGST----NFPP 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECS------SCTTEEEEECCCGGGS----SCCH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEecccc------ccCCeeehHhhcccch----HHHH
Confidence 799999999999999999998532 11 111111211 2221111 1136899999998532 1112
Q ss_pred HHHHHH--cccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC------------ChHHHHHHH
Q 016700 253 RNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP------------EARDRLQSL 318 (384)
Q Consensus 253 ~~fl~~--i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~------------~~~e~~~~l 318 (384)
..++.. +...+..++ ++... -..+.. .+...|.. .++|+++|+||.|+. ...+..+.+
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv-~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR-FKKNDI-DIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC-CCHHHH-HHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC-ccHHHH-HHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 233333 344455554 66543 123333 34444443 358999999999864 122233333
Q ss_pred HHHH----HhcC--C---cccccccc--cCHHHHHHHHHhccCcccc
Q 016700 319 TEEI----LKIG--C---DKVTSETE--LSSEDAVKSLSTEGGEADL 354 (384)
Q Consensus 319 ~~~~----~~~~--~---~~~sa~t~--~gv~e~l~~l~~~~~~~~~ 354 (384)
.+.. ...+ . ..++++.. .+++++.+.+.+.+.+...
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 3332 2322 1 23455433 4699999999888866553
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.58 E-value=2.1e-08 Score=98.42 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=76.5
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCC----------CCCCHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.||||+|+. .+...|..+++.++++|+|+|++ +..+++....+++++.... ...+.|+++
T Consensus 184 ~l~iwDtaGQe-------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiL 255 (354)
T 2xtz_A 184 VYRLFDVGGQR-------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFML 255 (354)
T ss_dssp EEEEEEECCST-------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEE
T ss_pred eeEEEECCCch-------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEE
Confidence 68999999984 35666777889999999999998 4555666666666665421 234689999
Q ss_pred EEeCCCCCChH-------------------------HHHHHH-HHHHHh------------cC--CcccccccccCHHHH
Q 016700 302 VLNKIDLPEAR-------------------------DRLQSL-TEEILK------------IG--CDKVTSETELSSEDA 341 (384)
Q Consensus 302 V~NK~Dl~~~~-------------------------e~~~~l-~~~~~~------------~~--~~~~sa~t~~gv~e~ 341 (384)
|+||+|+.... +....+ .+.+.. .. +.+++|.++.+++++
T Consensus 256 vgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~v 335 (354)
T 2xtz_A 256 FLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 335 (354)
T ss_dssp EEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHH
T ss_pred EEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHH
Confidence 99999984211 111122 222211 12 358999999999999
Q ss_pred HHHHHhcc
Q 016700 342 VKSLSTEG 349 (384)
Q Consensus 342 l~~l~~~~ 349 (384)
|+++.+.+
T Consensus 336 F~~v~~~I 343 (354)
T 2xtz_A 336 FKLVDETL 343 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 218
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.50 E-value=7.2e-08 Score=90.62 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=39.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC-CccCCCCceeecceEEecCCCCCCccccCCceEEEeCCCCcccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 245 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~-~ia~~~~tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a 245 (384)
.+|+++|.||+|||||+|+|.+... .+++.|++|.......+ ...+.+|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-----------ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-----------TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-----------CCCEEEEECCCcccCc
Confidence 6899999999999999999998775 45778888876543222 1368999999998653
No 219
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.42 E-value=6.5e-08 Score=93.84 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=74.3
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCC----------CCCCHhHHHHHHHHHHhcCCCCCCCCEEE
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 301 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~~p~iv 301 (384)
.+.||||+|+. .+...|..+++.++++|||+|++ +..++++...+++++... +.+.+.|+++
T Consensus 168 ~l~iwDtgGQe-------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~-~~~~~~~iiL 239 (327)
T 3ohm_A 168 IFRMVDVGGQR-------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVIL 239 (327)
T ss_dssp EEEEEEECCSH-------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS-GGGTTCEEEE
T ss_pred eeEEEEcCCch-------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh-hccCCceEEE
Confidence 68999999984 45667778899999999999776 233344444444444431 2235789999
Q ss_pred EEeCCCCCChH--------------------HHHH-HHHHHHHh--------cCCcccccccccCHHHHHHHHHhccC
Q 016700 302 VLNKIDLPEAR--------------------DRLQ-SLTEEILK--------IGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 302 V~NK~Dl~~~~--------------------e~~~-~l~~~~~~--------~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
++||+|+.... +... -+.+.+.. +.+.+++|.+..+++.+|..+.+.+.
T Consensus 240 ~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 240 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp EEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 99999985321 1111 12222221 23447889999999999999887664
No 220
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=85.92 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=69.3
Q ss_pred cchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHH-HhcCCC--CCCCCEEEEEeC-CCCCChHHHHHHHHHHH--
Q 016700 249 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPD--YLERPFIVVLNK-IDLPEARDRLQSLTEEI-- 322 (384)
Q Consensus 249 ~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL-~~~~~~--l~~~p~ivV~NK-~Dl~~~~e~~~~l~~~~-- 322 (384)
..++..|..|++.+|++|||||+++.+..+..+.+. +| ....++ +.+.|++|.+|| .|++.+.. ..++.+.+
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~-eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L 275 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS-HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHL 275 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHH-HHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHH-HHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCC
Confidence 557888999999999999999999977654333222 22 111111 357899999997 58876432 22333332
Q ss_pred ----HhcCCcccccccccCHHHHHHHHHhccC
Q 016700 323 ----LKIGCDKVTSETELSSEDAVKSLSTEGG 350 (384)
Q Consensus 323 ----~~~~~~~~sa~t~~gv~e~l~~l~~~~~ 350 (384)
..+.+..++|.+++|+.+.++||++.+.
T Consensus 276 ~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 276 NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred ccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 2234568999999999999999998774
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.26 E-value=2.1e-06 Score=81.39 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=67.8
Q ss_pred EEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH
Q 016700 235 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR 314 (384)
Q Consensus 235 i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~ 314 (384)
|-+.||+... ..+.++++++++|++++|+|+.++..... .++..+. .++|.++|+||+|+.+. +.
T Consensus 3 i~w~PGhm~k------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~l---~~kp~ilVlNK~DL~~~-~~ 67 (282)
T 1puj_A 3 IQWFPGHMAK------ARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDIL---KNKPRIMLLNKADKADA-AV 67 (282)
T ss_dssp ------CTTH------HHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHHC---SSSCEEEEEECGGGSCH-HH
T ss_pred CcCCchHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHHH---CCCCEEEEEECcccCCH-HH
Confidence 4567998542 45678899999999999999998765542 1222222 36999999999999874 44
Q ss_pred HHHHHHHHHhcCC--cccccccccCHHHHHHHHHhcc
Q 016700 315 LQSLTEEILKIGC--DKVTSETELSSEDAVKSLSTEG 349 (384)
Q Consensus 315 ~~~l~~~~~~~~~--~~~sa~t~~gv~e~l~~l~~~~ 349 (384)
.+.+.+.++..++ ..+++.++.+++++++.+.+.+
T Consensus 68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 5566666665444 4678889999999887765543
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.23 E-value=2.8e-06 Score=81.27 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=65.3
Q ss_pred HHcccCCeEEEEeeCCCCC-CHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHhcCC--cccc
Q 016700 257 RHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVT 331 (384)
Q Consensus 257 ~~i~~ad~il~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e--~~~~l~~~~~~~~~--~~~s 331 (384)
.++..+|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+..+ ..+++.+.++..++ .++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEE
Confidence 3688999999999999875 66666667666654 3689999999999986542 24555566665554 5789
Q ss_pred cccccCHHHHHHHHHh
Q 016700 332 SETELSSEDAVKSLST 347 (384)
Q Consensus 332 a~t~~gv~e~l~~l~~ 347 (384)
++++.|++++++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999987654
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=5.6e-06 Score=86.69 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
++.|+|+|.+|||||||+++|++..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3569999999999999999999874
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.15 E-value=4.8e-06 Score=83.70 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=40.4
Q ss_pred ceEEEeCCCCccccccccchhHHH--HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCC-C-EEEEEeCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P-FIVVLNKID 307 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~f--l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~-p-~ivV~NK~D 307 (384)
.++|+||||..... ..+.... ...+..+|.+++|+|++... +... .+..+.. .. | ..+|+||+|
T Consensus 182 D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~----~~~~~~~---~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 182 DVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGI----QAKAFKE---AVGEIGSIIVTKLD 249 (432)
T ss_dssp SEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHH----HHHHHHT---TSCSCEEEEEECSS
T ss_pred CEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHHH----HHHHHhh---cccCCeEEEEeCCC
Confidence 79999999986421 1111111 12233689999999987532 2222 2233322 24 5 899999999
Q ss_pred CCCh
Q 016700 308 LPEA 311 (384)
Q Consensus 308 l~~~ 311 (384)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8643
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=1.3e-05 Score=80.60 Aligned_cols=149 Identities=14% Similarity=0.166 Sum_probs=75.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHc------CCCCc-cCCCCc--------ee--ecceEEecCCCCCCc-----------cc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH------AKPDI-ADYPFT--------TL--MPNLGRLDGDPTLGA-----------EK 228 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~------~~~~i-a~~~~t--------T~--~p~~g~v~~~~~~~~-----------~~ 228 (384)
.-|+++|.+||||||++..|.. .++.+ +.-++. +. ...+..+......+. ..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999873 33222 111110 00 001111111100000 00
Q ss_pred cCCceEEEeCCCCccccccccchhHHH--HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 016700 229 YSSEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 306 (384)
Q Consensus 229 ~~~~i~i~DtPG~~~~a~~~~gl~~~f--l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~ 306 (384)
....++|+||||..... ..+.... +..+..+|.+++|+|++... +... ....+.. .-.+..+|+||+
T Consensus 181 ~~~DvVIIDTaGrl~~d---~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~-~a~~f~~-----~~~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKED---KALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYN-QALAFKE-----ATPIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHH-HHHHHHH-----SCTTEEEEEECC
T ss_pred CCCCEEEEECCCcccch---HHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHH-HHHHHHh-----hCCCeEEEEECC
Confidence 11379999999975421 1111111 12334579999999998532 2222 2233332 124678999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCcccccccccCHH
Q 016700 307 DLPEARDRLQSLTEEILKIGCDKVTSETELSSE 339 (384)
Q Consensus 307 Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv~ 339 (384)
|.......+. ......+.+...+.++++++
T Consensus 250 D~~~~gG~~l---s~~~~~g~PI~fig~Ge~vd 279 (443)
T 3dm5_A 250 DGSAKGGGAL---SAVAATGAPIKFIGTGEKID 279 (443)
T ss_dssp SSCSSHHHHH---HHHHTTCCCEEEEECSSSTT
T ss_pred CCcccccHHH---HHHHHHCCCEEEEEcCCChH
Confidence 9876433222 23334455443344555543
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.94 E-value=1e-05 Score=79.53 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=60.7
Q ss_pred HHHHHc-ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHH-HHHHHHHHhcCC-
Q 016700 254 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRL-QSLTEEILKIGC- 327 (384)
Q Consensus 254 ~fl~~i-~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~-~~l~~~~~~~~~- 327 (384)
.+++++ ++++++++|+|+++... .+..++..+. .++|+++|+||+|+.+.. +.. +.+.+.++..++
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l---~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA---ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC---TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh---CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 355555 88999999999997542 2333444442 368999999999997642 222 233344566665
Q ss_pred ----cccccccccCHHHHHHHHHhc
Q 016700 328 ----DKVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 328 ----~~~sa~t~~gv~e~l~~l~~~ 348 (384)
..+|+.++.|++++++.+...
T Consensus 135 ~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 135 PVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp CSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999988653
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.89 E-value=1.2e-05 Score=78.99 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=59.1
Q ss_pred HHHHHcc-cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHH-HHHHHHhcCC-
Q 016700 254 NFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQS-LTEEILKIGC- 327 (384)
Q Consensus 254 ~fl~~i~-~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~---e~~~~-l~~~~~~~~~- 327 (384)
.+++++. .++++|+|+|++++ ...|..++..+. .++|+++|+||+|+.+.. +..++ +.+.++..++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~-----~~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDF-----NGSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSH-----HHHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCcEEEEEEECCCC-----cccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 3455554 56699999999863 134555566553 368999999999997543 22222 2333455555
Q ss_pred ----cccccccccCHHHHHHHHHh
Q 016700 328 ----DKVTSETELSSEDAVKSLST 347 (384)
Q Consensus 328 ----~~~sa~t~~gv~e~l~~l~~ 347 (384)
..+|+.++.|++++++.+..
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhh
Confidence 46799999999999999865
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.82 E-value=1.7e-05 Score=74.32 Aligned_cols=94 Identities=26% Similarity=0.268 Sum_probs=63.2
Q ss_pred CCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH
Q 016700 238 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS 317 (384)
Q Consensus 238 tPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e~~~~ 317 (384)
.||+... ..+.++++++++|++++|+|+.++...... ++. + + ++|.++|+||+||.+. +..+.
T Consensus 4 ~PGhm~k------a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l---l-~k~~iivlNK~DL~~~-~~~~~ 66 (262)
T 3cnl_A 4 YPGHIEK------AKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F---S-RKETIILLNKVDIADE-KTTKK 66 (262)
T ss_dssp -----CC------TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C---T-TSEEEEEEECGGGSCH-HHHHH
T ss_pred CchHHHH------HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h---c-CCCcEEEEECccCCCH-HHHHH
Confidence 3676532 345788999999999999999876544321 111 1 1 6999999999999874 33455
Q ss_pred HHHHHHhcCCc-ccccccccCHHHHHHHHHhc
Q 016700 318 LTEEILKIGCD-KVTSETELSSEDAVKSLSTE 348 (384)
Q Consensus 318 l~~~~~~~~~~-~~sa~t~~gv~e~l~~l~~~ 348 (384)
+.+.++..++. .+++.++.|++++++.+...
T Consensus 67 ~~~~~~~~g~~v~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 67 WVEFFKKQGKRVITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHTTCCEEECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHcCCeEEEECCCCcCHHHHHHHHHHh
Confidence 56666554322 78888999999988877653
No 229
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=2.8e-05 Score=78.33 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=43.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC---------------CCCccCCCCceeecceEEecCCCCC-C--ccccCCceEEEe
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGDPTL-G--AEKYSSEATLAD 237 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~---------------~~~ia~~~~tT~~p~~g~v~~~~~~-~--~~~~~~~i~i~D 237 (384)
+.-|+|+|.+++|||||||.|.+. +..+-....||...+.|++...... . ...-...++++|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 456999999999999999999864 2233223336666666765432100 0 000012699999
Q ss_pred CCCCccc
Q 016700 238 LPGLIEG 244 (384)
Q Consensus 238 tPG~~~~ 244 (384)
|||+.+.
T Consensus 147 TeG~~~~ 153 (447)
T 3q5d_A 147 TQGTFDS 153 (447)
T ss_dssp EECCCSS
T ss_pred CCccccc
Confidence 9999653
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.72 E-value=3.6e-05 Score=77.19 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=40.3
Q ss_pred CceEEEeCCCCccccccccchhHH---HHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~---fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
..++|+||||..... ....+... +.+. -..+.+++|+|+.... +.. .+...+... -.+..+|+||+|
T Consensus 180 ~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq--~a~-~~a~~f~~~-----~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYG-EETKLLEEMKEMYDV-LKPDDVILVIDASIGQ--KAY-DLASRFHQA-----SPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSC-CTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGG--GGH-HHHHHHHHH-----CSSEEEEEECGG
T ss_pred CCEEEEECCCCcccc-CCHHHHHHHHHHHHh-hCCcceEEEEeCccch--HHH-HHHHHHhcc-----cCCcEEEEeccc
Confidence 379999999964310 11122222 1222 2468999999997532 222 222333321 256789999999
Q ss_pred CCCh
Q 016700 308 LPEA 311 (384)
Q Consensus 308 l~~~ 311 (384)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8754
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=0.00021 Score=68.10 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=50.1
Q ss_pred ceEEEeCCCCccccccccchhHHH--HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL 308 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~f--l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~NK~Dl 308 (384)
.++|+||||..... ....+.... +..+..+|.+++|+|+... .+.+..+ ..+.. ..| ..+|+||+|.
T Consensus 182 D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~-~~~~~------~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 182 EIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA-SKFNQ------ASKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH-HHHHH------TCTTEEEEEECGGG
T ss_pred CEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH-HHHHh------hCCCCEEEEeCCCC
Confidence 69999999985410 001111110 1234568999999998742 2232222 22222 244 7899999997
Q ss_pred CChHHHHHHHHHHHHhcCCcccccccccCH
Q 016700 309 PEARDRLQSLTEEILKIGCDKVTSETELSS 338 (384)
Q Consensus 309 ~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv 338 (384)
..... .........+.+.....+++++
T Consensus 252 ~~~~g---~~~~~~~~~~~pi~~i~~Ge~v 278 (297)
T 1j8m_F 252 TAKGG---GALSAVAATGATIKFIGTGEKI 278 (297)
T ss_dssp CTTHH---HHHHHHHTTTCCEEEEECSSST
T ss_pred CcchH---HHHHHHHHHCcCEEEEeCCCCh
Confidence 64322 2333444455444443455554
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.26 E-value=0.0011 Score=62.92 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=47.5
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcc--cCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~--~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
..++|+||||..... ..+...+.+.+. .++.+++|+|++.. .+++..+ ...+. . . ...-+|+||.|.
T Consensus 183 ~dlvIiDT~G~~~~~---~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~---~~~~~-~-l-~~~giVltk~D~ 251 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD---PQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHI---VKRFS-S-V-PVNQYIFTKIDE 251 (296)
T ss_dssp SSEEEEECCCCCTTS---HHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHH---TTTTS-S-S-CCCEEEEECTTT
T ss_pred CCEEEEeCCCCChhh---HHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHH---HHHHh-c-C-CCCEEEEeCCCc
Confidence 379999999986431 112222223333 35678999998742 2333322 22222 1 1 234567899997
Q ss_pred CChHHHHHHHHHHHHhcCCcccccccccC
Q 016700 309 PEARDRLQSLTEEILKIGCDKVTSETELS 337 (384)
Q Consensus 309 ~~~~e~~~~l~~~~~~~~~~~~sa~t~~g 337 (384)
..... .+.......+.+.....+++.
T Consensus 252 ~~~~g---~~~~~~~~~~~pi~~i~~ge~ 277 (296)
T 2px0_A 252 TTSLG---SVFNILAESKIGVGFMTNGQN 277 (296)
T ss_dssp CSCCH---HHHHHHHTCSCCCSEECCSSC
T ss_pred ccchh---HHHHHHHHHCcCEEEEECCCC
Confidence 64322 333444455544333333333
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.23 E-value=0.00091 Score=58.84 Aligned_cols=67 Identities=4% Similarity=-0.102 Sum_probs=47.3
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~ 309 (384)
.++|+|||+... ......+..||.++++++.+... .....+.+.+..........++.+|+|++|..
T Consensus 77 D~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 77 DFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 789999998742 23445567799999999987655 55666667776543222245779999999954
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.21 E-value=0.00017 Score=69.14 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=23.0
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+...-.++|+|++|||||||+|+|.+..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 33445579999999999999999999764
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.20 E-value=0.00034 Score=67.59 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.--|+|+|++|||||||++.|.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999863
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.19 E-value=0.0001 Score=66.20 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=33.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC-c-cCCCCceeecceEEec
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLD 219 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~-i-a~~~~tT~~p~~g~v~ 219 (384)
-|+|+|++|||||||+++|.+..+. + ...+.||..|..+.++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~ 64 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEED 64 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeec
Confidence 4899999999999999999987652 3 5567788888766543
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.10 E-value=0.0021 Score=64.43 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=62.5
Q ss_pred ceEEEEecCCCcHHHHHHHHH-------cCCCCc-cCCCCce--e--------ecceEEecCCCCCC----------ccc
Q 016700 177 ADVGLVGLPNAGKSTLLAAIT-------HAKPDI-ADYPFTT--L--------MPNLGRLDGDPTLG----------AEK 228 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~-------~~~~~i-a~~~~tT--~--------~p~~g~v~~~~~~~----------~~~ 228 (384)
..|+++|.+|+||||+...|. +.++.+ ..-++.+ . ...+-.+....... ...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~ 180 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999987 433322 1111110 0 01111111100000 000
Q ss_pred -cCCceEEEeCCCCccccccccchhHHH--HHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCC-EEEEEe
Q 016700 229 -YSSEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLN 304 (384)
Q Consensus 229 -~~~~i~i~DtPG~~~~a~~~~gl~~~f--l~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p-~ivV~N 304 (384)
....++|+||||..... ..+.... ...+..++.+++|+|+.... +.+..+ ..+.. ..+ .-+|+|
T Consensus 181 ~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~-~~f~~------~l~i~gvVln 248 (433)
T 2xxa_A 181 LKFYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTA-KAFNE------ALPLTGVVLT 248 (433)
T ss_dssp HTTCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHH-HHHHH------HSCCCCEEEE
T ss_pred hCCCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHH-HHHhc------cCCCeEEEEe
Confidence 12379999999975421 1111111 12344688999999987542 222222 22221 123 357999
Q ss_pred CCCCCC
Q 016700 305 KIDLPE 310 (384)
Q Consensus 305 K~Dl~~ 310 (384)
|+|...
T Consensus 249 K~D~~~ 254 (433)
T 2xxa_A 249 KVDGDA 254 (433)
T ss_dssp CTTSSS
T ss_pred cCCCCc
Confidence 999754
No 238
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.08 E-value=0.0011 Score=63.23 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=26.4
Q ss_pred CccccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 161 GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 161 g~~ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
...|+-..-.++.....-++|+|++|||||||+|+|. ..
T Consensus 150 A~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3444433322233334568999999999999999999 54
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.07 E-value=0.00028 Score=69.02 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=36.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCCC-C-ccCCCC-------ceeecceEEecCCCCCCccccCCceEEEeCCCCcc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAKP-D-IADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 243 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~~-~-ia~~~~-------tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~ 243 (384)
.-.++|+|++|||||||+|+|.+... . .+.... +|....++.+. ....++||||+.+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-----------q~~~l~dtpgv~e 280 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-----------HGGDVIDSPGVRE 280 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-----------TSCEEEECHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-----------CCCEecCcccHHH
Confidence 34699999999999999999998654 2 222211 33333334332 1346799999865
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.04 E-value=0.00046 Score=70.16 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.8
Q ss_pred hcceEEEEecCCCcHHHHHHHHHc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..--|+|+|.+|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 344689999999999999999975
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.93 E-value=0.0017 Score=62.13 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..-|+|+|.+|+||||++..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34589999999999999999874
No 242
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.89 E-value=0.0013 Score=62.46 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=28.5
Q ss_pred ccCccccchhhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 159 VLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 159 ~~g~~ge~~~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
..+..|+-..-.+......-++|+|++|||||||||+|.+..
T Consensus 152 ~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 152 TSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp CCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred EECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 334444433322233334568999999999999999999864
No 243
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.85 E-value=0.004 Score=59.35 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
--|+|+|++|||||||++.|.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999985
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.0011 Score=63.43 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=51.8
Q ss_pred HcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCc--cccc
Q 016700 258 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD--KVTS 332 (384)
Q Consensus 258 ~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e---~~~~l~~~~~~~~~~--~~sa 332 (384)
.+..+|.+++|+|+..++.... .+-..|.... ..++|.++|+||+||.+..+ ..+.+.+.+...++. .+++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec
Confidence 4788999999999986554433 2222232110 13689999999999987543 356677777666554 3455
Q ss_pred ccccCHHHHHH
Q 016700 333 ETELSSEDAVK 343 (384)
Q Consensus 333 ~t~~gv~e~l~ 343 (384)
.++.++++++.
T Consensus 159 ~~~~g~~~L~~ 169 (307)
T 1t9h_A 159 KDQDSLADIIP 169 (307)
T ss_dssp HHHTTCTTTGG
T ss_pred CCCCCHHHHHh
Confidence 55555554443
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.80 E-value=0.0035 Score=60.24 Aligned_cols=151 Identities=16% Similarity=0.076 Sum_probs=74.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcC------CCCc--cCCCC-------cee-----ecceEEe-cCCCCCCc------
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHA------KPDI--ADYPF-------TTL-----MPNLGRL-DGDPTLGA------ 226 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~------~~~i--a~~~~-------tT~-----~p~~g~v-~~~~~~~~------ 226 (384)
+...-|+|+|.+|+||||++..|... +..+ .+... .+. ...+..+ ........
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 34446899999999999999988642 1111 11100 011 2333444 11100000
Q ss_pred -----cccCCceEEEeCCCCccccccccchhHH---HHHHc-----ccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC
Q 016700 227 -----EKYSSEATLADLPGLIEGAHLGKGLGRN---FLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 293 (384)
Q Consensus 227 -----~~~~~~i~i~DtPG~~~~a~~~~gl~~~---fl~~i-----~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~ 293 (384)
..-...++|+||||...... .+... +.+.+ ..+|.+++|+|+... .+.+.. +..+.+.
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~---~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKT---NLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHH---HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccccH---HHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHhhc
Confidence 00123699999999864311 01111 11111 237899999998732 333333 2334332
Q ss_pred CCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcccccccccCH
Q 016700 294 YLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSS 338 (384)
Q Consensus 294 l~~~p~ivV~NK~Dl~~~~e~~~~l~~~~~~~~~~~~sa~t~~gv 338 (384)
. ...-+|+||+|....-.. +.......+.+...+.+++.+
T Consensus 254 ~--~i~GvVltk~d~~~~~g~---~~~~~~~~~~Pi~~i~~Ge~~ 293 (320)
T 1zu4_A 254 A--DVSGIILTKMDSTSKGGI---GLAIKELLNIPIKMIGVGEKV 293 (320)
T ss_dssp S--CCCEEEEECGGGCSCTTH---HHHHHHHHCCCEEEEECSSST
T ss_pred C--CCcEEEEeCCCCCCchhH---HHHHHHHHCcCEEEEeCCCCc
Confidence 1 234588999996543222 223333444443333344444
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.52 E-value=0.0093 Score=58.18 Aligned_cols=81 Identities=21% Similarity=0.134 Sum_probs=51.3
Q ss_pred cccCCeEEEEeeCCCCCCHh-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHhcCCc--ccccc
Q 016700 259 LRRTRLLVHVIDAAAENPVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCD--KVTSE 333 (384)
Q Consensus 259 i~~ad~il~VvD~s~~~~~~-~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~~e--~~~~l~~~~~~~~~~--~~sa~ 333 (384)
+..+|.+++| |+..+.... .+..++-.... .++|.++|+||+||.+..+ ..+.+...+...++. .+++.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~-----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCET-----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHH-----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 5788999876 444443322 22222111111 2578899999999987543 255566667776665 56778
Q ss_pred cccCHHHHHHHH
Q 016700 334 TELSSEDAVKSL 345 (384)
Q Consensus 334 t~~gv~e~l~~l 345 (384)
++.+++++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 888998887654
No 247
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.47 E-value=0.021 Score=50.80 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=49.9
Q ss_pred ceEEEeCCCC-ccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 232 EATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 232 ~i~i~DtPG~-~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.++|+|||+. ... .....+..||.+|++++.+. ........+.+.+.... +.++.+|+|++|...
T Consensus 69 D~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG----NNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC----SSSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc----CCCEEEEEEecCCcc
Confidence 6999999986 331 23455678999999998763 22333444555555432 456899999999764
Q ss_pred -hHHHHHHHHHHHHhcCC
Q 016700 311 -ARDRLQSLTEEILKIGC 327 (384)
Q Consensus 311 -~~e~~~~l~~~~~~~~~ 327 (384)
.. .+++.+.+++++.
T Consensus 135 ~~~--~~~~~~~l~~~g~ 150 (209)
T 3cwq_A 135 SKD--GDEARQLLTTAGL 150 (209)
T ss_dssp SCH--HHHHHHHHHHTTC
T ss_pred chH--HHHHHHHHHHcCC
Confidence 22 2344444554543
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0015 Score=56.89 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=27.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC-c-cCCCCceeecceEE
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR 217 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~-i-a~~~~tT~~p~~g~ 217 (384)
-|+|+|++|||||||++.|.+..+. . .....||..|..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 4899999999999999999876441 2 34455666665543
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.29 E-value=0.0017 Score=57.63 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=34.2
Q ss_pred EEEEecCCCcHHHHHHHHHcCCCC-c-cCCCCceeecceEEecCC
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD 221 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~~-i-a~~~~tT~~p~~g~v~~~ 221 (384)
|+|+|++|||||||+++|....+. + -..+.||..|..+.+++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~ 48 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGK 48 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCc
Confidence 789999999999999999876653 3 456788888877766543
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.17 E-value=0.019 Score=57.20 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
.-|+++|.+|+||||++..|..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999874
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.13 E-value=0.016 Score=54.86 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
.-|+++|.+|+||||++..|..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999874
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.04 E-value=0.003 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++|+|++|||||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.85 E-value=0.0037 Score=56.29 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=23.4
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
+.+.+...--++|+|++|||||||++.|.+..+
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 334455555699999999999999999998643
No 254
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.84 E-value=0.032 Score=52.44 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=41.7
Q ss_pred CceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 016700 231 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 308 (384)
Q Consensus 231 ~~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~i-vV~NK~Dl 308 (384)
..++|+|||+..... .+...+..||.+|+|++.+. ........+.+.+..... ..+.+++ +|+|+++.
T Consensus 157 yD~ViiD~p~~~~~~--------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCG--------GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCG--------GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchH--------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCc
Confidence 378999998764321 12234678999999997653 223444455556654321 1234444 99999984
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.79 E-value=0.0042 Score=55.03 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=21.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
..++|+|++|||||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998753
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.77 E-value=0.0051 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.5
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999875
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.71 E-value=0.0048 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
.-|+|+|++|||||||++.|.+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999987643
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.68 E-value=0.0044 Score=56.15 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=28.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCCC--c-cCCCCceeec
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMP 213 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~~--i-a~~~~tT~~p 213 (384)
..--++|+|++|||||||++.|.+..+. . .....+|..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 3345899999999999999999986542 2 3444555443
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.65 E-value=0.0062 Score=54.26 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=28.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC-c-cCCCCceeecceE
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLG 216 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~-i-a~~~~tT~~p~~g 216 (384)
-|+|+|++|||||||++.|....+. . .....+|..|..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 4899999999999999999987542 2 3444555555443
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.58 E-value=0.0057 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999874
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.57 E-value=0.0043 Score=54.95 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=26.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCCC-c-cCCCCceeecc
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPN 214 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~~-i-a~~~~tT~~p~ 214 (384)
-|+|+|++|||||||.+.|....+. . .....||..|.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~ 52 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKR 52 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCC
Confidence 4899999999999999999865432 2 22334555544
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.48 E-value=0.0064 Score=52.25 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=24.6
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++..--++|+|+.|||||||++.|.+..
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 333555569999999999999999999864
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.45 E-value=0.0064 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHcCCC
Q 016700 179 VGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
|+|+|++|||||||++.|.+..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999997643
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.44 E-value=0.0045 Score=56.18 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=25.4
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...--++|+|+.|||||||++.|.+-.
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555579999999999999999999864
No 265
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.41 E-value=0.0075 Score=57.54 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.+.++..-.|+|+|++|+|||||++.|.+-
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4455666678999999999999999999864
No 266
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.39 E-value=0.0075 Score=53.55 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=22.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
...--++|+|++|||||||++.|.+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3344589999999999999999998654
No 267
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.37 E-value=0.0078 Score=53.04 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=22.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.+.+.....|+|+|++||||||+.+.|...
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455666678999999999999999999853
No 268
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.33 E-value=0.005 Score=56.34 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=25.3
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...--++|+|+.|||||||++.|.+-.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445555579999999999999999999864
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.25 E-value=0.0055 Score=56.79 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|++-.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999864
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.23 E-value=0.007 Score=53.78 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|++|||||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 271
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.22 E-value=0.009 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcCC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
..-|+|+|++|||||||++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998764
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.16 E-value=0.0061 Score=55.84 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=25.5
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+...-.++|+|+.|||||||++.|.+..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555579999999999999999999863
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.14 E-value=0.0059 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.0
Q ss_pred cceEEEEecCCCcHHHHHHHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~ 197 (384)
.--++|+|++|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3358999999999999999865
No 274
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.14 E-value=0.0064 Score=55.89 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.6
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++. --++|+|+.|||||||++.|.+-.
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 4445556 679999999999999999999864
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.14 E-value=0.0058 Score=55.23 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=26.1
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|||||||++.|.+..
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455556679999999999999999999863
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.13 E-value=0.0061 Score=55.49 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=25.7
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|+.|||||||++.|.+..
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445556679999999999999999999864
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.0061 Score=56.00 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=25.6
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|+.|||||||++.|.+-.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555679999999999999999999864
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.13 E-value=0.0062 Score=56.67 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455555679999999999999999999864
No 279
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.11 E-value=0.0098 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.3
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-|+|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999985
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.09 E-value=0.0064 Score=56.10 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=26.4
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|||||||++.|.+-.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455566679999999999999999999864
No 281
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.07 E-value=0.0065 Score=56.73 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=26.1
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33455555679999999999999999999864
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.07 E-value=0.0065 Score=57.08 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34455556679999999999999999999864
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.04 E-value=0.0068 Score=56.52 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.3
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..--++|+|+.|||||||++.|.+-.
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3445555579999999999999999999864
No 284
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.03 E-value=0.0046 Score=55.79 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=18.1
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHH-cCC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAIT-HAK 200 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~-~~~ 200 (384)
.++...-|+|+|++|||||||++.|. +..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34445569999999999999999999 764
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.01 E-value=0.007 Score=55.51 Aligned_cols=31 Identities=35% Similarity=0.358 Sum_probs=25.4
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...--++|+|+.|||||||++.|.+-.
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555579999999999999999999864
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.98 E-value=0.0077 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=25.1
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+++...--++|+|+.|||||||++.|.+-
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555557999999999999999999985
No 287
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.96 E-value=0.0069 Score=61.01 Aligned_cols=104 Identities=16% Similarity=0.051 Sum_probs=52.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCCCCccCCCC-ceeecceEEecCCCCCCccccCCceEEEeCCCCccccccccch----
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL---- 251 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~~~ia~~~~-tT~~p~~g~v~~~~~~~~~~~~~~i~i~DtPG~~~~a~~~~gl---- 251 (384)
..|.|+|+|||||||+.+.|...-. +.+ .|...+...+..... .. .....+||..|.... ...+..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~----~~~~~t~~~~~d~~r~~~~---g~-~~~~~ifd~~g~~~~-r~re~~~~~~ 110 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN----FIGVPTREFNVGQYRRDMV---KT-YKSFEFFLPDNEEGL-KIRKQCALAA 110 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHHHHHHH---CS-CCCGGGGCTTCHHHH-HHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh----ccCCCceEEecchhhhhhc---cC-CCcccccCCCCHHHH-HHHHHHHHHH
Confidence 4699999999999999999975411 011 111110000000000 00 012346777765110 000000
Q ss_pred hHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhc
Q 016700 252 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 290 (384)
Q Consensus 252 ~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~ 290 (384)
......++..++..++|+|+++. ..+....|.++++.+
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 01113455567888999999986 455556666666653
No 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.96 E-value=0.011 Score=53.93 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=23.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.+.++...-|+|+|+.|||||||++.|.+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455666667999999999999999999874
No 289
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.95 E-value=0.008 Score=56.07 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+++...--++|+|+.|||||||++.|.+-
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445557999999999999999999985
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.95 E-value=0.0074 Score=55.80 Aligned_cols=31 Identities=39% Similarity=0.345 Sum_probs=25.4
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+++...-.++|+|+.|||||||++.|.+..
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445555579999999999999999999864
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.93 E-value=0.012 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999764
No 292
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.93 E-value=0.0075 Score=56.74 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.4
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.++++..-.++|+|+.|||||||++.|++..
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445555579999999999999999999864
No 293
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.93 E-value=0.0077 Score=55.97 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.+...-.++|+|+.|||||||++.|.+..
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34455566679999999999999999999864
No 294
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.90 E-value=0.0079 Score=55.84 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+++...--++|+|+.|||||||++.|.+-.
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455556679999999999999999999864
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.88 E-value=0.013 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|.+|||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.87 E-value=0.0081 Score=56.21 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...-.++|+|+.|||||||++.|.+..
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455579999999999999999999864
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.87 E-value=0.013 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+.-++|+|++|+|||||+++|...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999864
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.82 E-value=0.015 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 299
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.75 E-value=0.0087 Score=55.39 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+++...--++|+|+.|||||||++.|.+..
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444555579999999999999999999864
No 300
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.70 E-value=0.0095 Score=55.50 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...--++|+|+.|||||||++.|.+-.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444555579999999999999999999864
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.66 E-value=0.017 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 302
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.66 E-value=0.015 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|++|||||||++.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999753
No 303
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.64 E-value=0.02 Score=55.65 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.5
Q ss_pred hhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 168 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 168 ~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+.++..-.|+|+|.+|||||||+++|.+.-
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456677777889999999999999999999864
No 304
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.62 E-value=0.01 Score=55.37 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=25.8
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+++. .-.++|+|+.|||||||++.|.+..
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566 6679999999999999999999864
No 305
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.60 E-value=0.017 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.8
Q ss_pred ceEEEEecCCCcHHHHHHHHH
Q 016700 177 ADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~ 197 (384)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999999
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.59 E-value=0.016 Score=51.57 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 307
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.57 E-value=0.019 Score=55.15 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=27.9
Q ss_pred hhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 168 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 168 ~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+.++..-.|+|+|++|||||||++.|.+.-
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355666777789999999999999999999864
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.55 E-value=0.017 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
--++|+|++|||||||++.|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999873
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.50 E-value=0.017 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|++|||||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999874
No 310
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.49 E-value=0.0083 Score=57.25 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=26.1
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.++..-.|+|+|+.|||||||++.|.+-.
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 33455566679999999999999999999853
No 311
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.49 E-value=0.012 Score=52.83 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=23.4
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+...-.++|+|+.|||||||++.|.+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345557999999999999999999986
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.48 E-value=0.018 Score=48.39 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=18.0
Q ss_pred eEEEEecCCCcHHHHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAI 196 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L 196 (384)
-|+|+|+|||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.46 E-value=0.018 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.1
Q ss_pred hcceEEEEecCCCcHHHHHHHHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~ 197 (384)
..--++|+|++|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 33458999999999999999988
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.40 E-value=0.019 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|+|+|++|||||||.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.30 E-value=0.014 Score=55.23 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...-.++|+|+.|||||||++.|.+..
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344455579999999999999999999864
No 316
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.28 E-value=0.02 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..--|+|+|++|||||||++.|.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3346999999999999999999874
No 317
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.26 E-value=0.023 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.5
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-|+|+|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 388999999999999999986
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.24 E-value=0.018 Score=55.84 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.3
Q ss_pred hhHHhhh--cceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRV--VADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~--~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.+.. ..+++|+|.+|||||||++.|.+..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555 6789999999999999999999853
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.24 E-value=0.015 Score=56.93 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=25.9
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+++...--++|+|+.|||||||++.|.+-.
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33445555579999999999999999999864
No 320
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.23 E-value=0.026 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|.|.|||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.22 E-value=0.014 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.+|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 322
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.21 E-value=0.044 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHH
Q 016700 175 VVADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~ 197 (384)
.+.-|+|+|.+++|||+|+|.|.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 35668899999999999999665
No 323
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.18 E-value=0.016 Score=56.52 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=25.9
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+++...--++|+|+.|||||||++.|.+-.
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33445555569999999999999999999864
No 324
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.023 Score=57.22 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.++....|+|+|+.|||||||++.|.+..
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45566677889999999999999999998753
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.18 E-value=0.022 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.+|||||||.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999754
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.17 E-value=0.024 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
.|+|+|++||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 327
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.17 E-value=0.025 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|+|||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.15 E-value=0.025 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
...|+|+|.|||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.05 E-value=0.026 Score=49.01 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 330
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.03 E-value=0.017 Score=56.28 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=26.4
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44555566679999999999999999999864
No 331
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.02 E-value=0.017 Score=56.29 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=25.9
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|++|||||||++.|.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34455555579999999999999999999864
No 332
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.01 E-value=0.027 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|.|+|+|||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999864
No 333
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.01 E-value=0.029 Score=51.79 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=25.2
Q ss_pred hhHHhhh---cceEEEEecCCCcHHHHHHHHHc
Q 016700 169 LELILRV---VADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 169 ~~l~lk~---~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+.+.++. ...|+|+|++||||||+.+.|..
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4455565 67899999999999999999975
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.99 E-value=0.024 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..-|+|+|.+|||||||++.|.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 346999999999999999999874
No 335
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.92 E-value=0.023 Score=48.90 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..-++|+|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.91 E-value=0.019 Score=56.13 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34455555579999999999999999999864
No 337
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.88 E-value=0.019 Score=56.44 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|++|||||||++.|.+-.
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34455555569999999999999999999864
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.84 E-value=0.036 Score=56.54 Aligned_cols=33 Identities=30% Similarity=0.209 Sum_probs=27.1
Q ss_pred hhhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 168 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 168 ~~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.+.++....|+|+|++|||||||+++|++.-
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345556666679999999999999999999753
No 339
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.83 E-value=0.02 Score=56.18 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.||||||||+.|.+-.
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34455555579999999999999999999864
No 340
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.76 E-value=0.02 Score=56.09 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=25.8
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+++...--++|+|+.|||||||++.|.+-.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 33445555569999999999999999999864
No 341
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.75 E-value=0.034 Score=49.16 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=19.4
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
+|+|+|.|||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.70 E-value=0.032 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.4
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|+|+|.+|||||||.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999999999999875
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.69 E-value=0.03 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|+|+|+|||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999865
No 344
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.68 E-value=0.033 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|+|+|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 345
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.68 E-value=0.023 Score=56.08 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=26.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.|+++..--++|+|+.|||||||++.|.+-.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34455556679999999999999999999854
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.66 E-value=0.036 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.65 E-value=0.045 Score=47.40 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
++....|+|+|.|||||||+.+.|...
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 444567999999999999999999753
No 348
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.61 E-value=0.017 Score=56.04 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=25.8
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33445555569999999999999999999864
No 349
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.60 E-value=0.036 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|.|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 350
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.59 E-value=0.034 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.58 E-value=0.045 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHc
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+....|+|+|.|||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999975
No 352
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.54 E-value=0.025 Score=53.87 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=22.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.+.-++|+|+.|||||||++.|.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35568999999999999999999753
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.52 E-value=0.043 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..-|+|+|.+|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 354
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.49 E-value=0.042 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|+|+|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 355
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.38 E-value=0.016 Score=56.41 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.1
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..--++|+|+.|||||||++.|.+-.
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455555579999999999999999999864
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.31 E-value=0.044 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|+|+|.|||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999753
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.29 E-value=0.046 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.6
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 358
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.25 E-value=0.049 Score=48.32 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
+|+|+|.|||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.21 E-value=0.044 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
.-|+|+|.+|||||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.18 E-value=0.04 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|+||+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
No 361
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.18 E-value=0.034 Score=57.49 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=26.6
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|||||||++.|.+-.
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 44555666689999999999999999999863
No 362
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.16 E-value=0.04 Score=53.62 Aligned_cols=22 Identities=41% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|++|||||||+++|.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999864
No 363
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.16 E-value=0.048 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.-|+|+|++|+|||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999853
No 364
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.12 E-value=0.026 Score=49.62 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|.+|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3899999999999999999753
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.09 E-value=0.053 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|+|+|.|||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999753
No 366
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.04 E-value=0.048 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|.|.|||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35999999999999999999763
No 367
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.2 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|.+++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999864
No 368
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.01 E-value=0.049 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|+|+|+|||||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345899999999999999999743
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.01 E-value=0.03 Score=47.31 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-++|+|++|+|||||++++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.00 E-value=0.047 Score=47.14 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|+|+|.+||||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999754
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.95 E-value=0.049 Score=46.74 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|.+||||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 372
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.93 E-value=0.25 Score=40.92 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.2
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|.|.|.||+|||+|..+|...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999865
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.93 E-value=0.056 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..-|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.90 E-value=0.05 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred cceEEEEecCCCcHHHHHHHHH
Q 016700 176 VADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~ 197 (384)
...|+|+|++|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.88 E-value=0.054 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 376
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.88 E-value=0.048 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|+||+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999875
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.87 E-value=0.054 Score=46.56 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.2
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
.|+|+|.|+|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.81 E-value=0.055 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred cceEEEEecCCCcHHHHHHHHHc
Q 016700 176 VADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..-|+|+|+|||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999975
No 379
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.81 E-value=0.27 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+.+.|.|++|+|||||+++|.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999987
No 380
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.76 E-value=0.044 Score=53.12 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=25.6
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...-.++|+|.+|||||||++.|++..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 555566689999999999999999999863
No 381
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.70 E-value=0.06 Score=46.24 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+.|+|+|.|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999975
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.69 E-value=0.06 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.|||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.68 E-value=0.062 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.0
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-.+|+|..|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 384
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.68 E-value=0.054 Score=47.81 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.2
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-++|+|++|+|||||+..|..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.64 E-value=0.065 Score=46.04 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.4
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.62 E-value=0.051 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..-.|+|+|++|||||||++.|.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446999999999999999999864
No 387
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.59 E-value=0.062 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|+|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.55 E-value=0.078 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.|+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 389
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.47 E-value=0.065 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999764
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.46 E-value=0.07 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|.|+|||||+.+.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.42 E-value=0.062 Score=50.15 Aligned_cols=28 Identities=18% Similarity=0.016 Sum_probs=22.6
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+...--++|+|.||+|||||+..|.+.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3444446899999999999999998764
No 392
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.41 E-value=0.034 Score=57.66 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=26.4
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|||||||++.|.+-.
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34455666689999999999999999999863
No 393
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.40 E-value=0.071 Score=45.68 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|+|+|.|||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 394
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.38 E-value=0.059 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999754
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.38 E-value=0.044 Score=52.01 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.3
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+..--|+|+|++|||||||++.|.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 344456899999999999999999863
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.30 E-value=0.075 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..++|+|+||+|||||++.|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 397
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.29 E-value=0.039 Score=57.31 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.5
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|++|||||||++.|.+-.
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44455666689999999999999999999864
No 398
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.27 E-value=0.064 Score=49.63 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|+||+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999875
No 399
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.24 E-value=0.033 Score=57.54 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=26.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|||||||++.|.+..
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34455666689999999999999999998863
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.23 E-value=0.062 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|++|||||||+++|.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999875
No 401
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.21 E-value=0.2 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..-|.|.|+||+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999864
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.16 E-value=0.077 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.+||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35999999999999999999875
No 403
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.16 E-value=0.051 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|..|||||||++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.16 E-value=0.079 Score=47.45 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 405
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.15 E-value=0.049 Score=56.31 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.4
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|+.|||||||++.|.+-.
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44455666689999999999999999999864
No 406
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.10 E-value=0.38 Score=43.31 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|+.++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999864
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.10 E-value=0.08 Score=46.83 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=22.9
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+....-|+|+|.+||||||+.+.|...
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444556999999999999999999754
No 408
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.08 E-value=0.062 Score=53.74 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.8
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+...-.++|+|.+|||||||++.|.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 555666789999999999999999999863
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.07 E-value=0.085 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.+||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999854
No 410
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.04 E-value=0.092 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.3
Q ss_pred hcceEEEEecCCCcHHHHHHHHHc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
....|+|+|.|||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999975
No 411
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.96 E-value=0.068 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
-++|+|+.|||||||++.|++..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999864
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.94 E-value=0.077 Score=47.02 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=20.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
.-|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999976
No 413
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.88 E-value=0.09 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|.|+|+|||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999854
No 414
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.85 E-value=0.056 Score=46.17 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|+|.|.|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999753
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.82 E-value=0.077 Score=54.43 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.1
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
...-.++|+|+.|||||||++.|.+..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344469999999999999999999864
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.82 E-value=0.083 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.4
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+....-|+|+|++|+|||||++.|.+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 334456999999999999999999863
No 417
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.74 E-value=0.081 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3789999999999999999753
No 418
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.69 E-value=0.67 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|.+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35899999999999999999864
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.60 E-value=0.086 Score=47.04 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
--++|+|++|+|||||+..|..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999987
No 420
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.56 E-value=0.096 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 421
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.41 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|.+++.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 45999999999999999999864
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.41 E-value=0.065 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.8
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+..--|+|+|++|||||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34446899999999999999999863
No 423
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.39 E-value=0.059 Score=54.55 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHhhhcceEEEEecCCCcHHHHHHHHHc
Q 016700 171 LILRVVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 171 l~lk~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+.++. --++|+|+.|||||||+++|.+
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 34444 5689999999999999999986
No 424
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.39 E-value=0.09 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.2
Q ss_pred eEEEEecCCCcHHHHHHHHHcCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
-++|+|+.|||||||++.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999864
No 425
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.38 E-value=0.081 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|+|+||||||||.+.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999754
No 426
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.4 Score=47.67 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 016700 179 VGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~ 199 (384)
|.|.|+||+|||+|.+++.+.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 427
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.37 E-value=0.096 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.6
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-++|+|.||+|||||+..|..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 428
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.29 E-value=0.094 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|+|+|.+|||||||.+.|...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.28 E-value=0.11 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.|||||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 430
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.25 E-value=0.1 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|.||+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.16 E-value=0.12 Score=43.60 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.6
Q ss_pred EEEEecCCCcHHHHHHHHH
Q 016700 179 VGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~ 197 (384)
.+|+|+.|+|||||+.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999986
No 432
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.90 E-value=0.1 Score=47.14 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...-|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999865
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.78 E-value=0.07 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|.|+|+|||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.77 E-value=0.09 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.4
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
..-.++|+|+.|||||||++.|.+..+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445789999999999999999998753
No 435
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.71 E-value=0.11 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
-.++|+|+.|||||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 369999999999999999999864
No 436
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.61 E-value=0.056 Score=55.99 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=26.2
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|++|||||||++.|.+-.
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34455566689999999999999999998753
No 437
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.57 E-value=0.65 Score=45.82 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 35999999999999999999864
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.55 E-value=0.12 Score=50.08 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=17.9
Q ss_pred EEEEecCCCcHHHHHHHHH
Q 016700 179 VGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~ 197 (384)
++|+|+.|||||||+++|+
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999987
No 439
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.53 E-value=0.12 Score=46.85 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|+|+||+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999864
No 440
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.43 E-value=0.62 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|.+++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 35999999999999999999864
No 441
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.36 E-value=0.48 Score=47.22 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|.+++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.32 E-value=0.097 Score=53.69 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.2
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+..--++|+|+.|||||||++.|++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999864
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.27 E-value=0.14 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.4
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
-|.|+|.|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.08 E-value=0.16 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..|+|+|.++|||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999764
No 445
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.03 E-value=0.11 Score=54.02 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.2
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcCCC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
..-.++|+|+.|||||||++.|.+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999998643
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.01 E-value=0.15 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=20.6
Q ss_pred hcceEEEEecCCCcHHHHHHHHHc
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..--++|+|++|+|||||+..|..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344589999999999999999875
No 447
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.85 E-value=0.17 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|.|.++|||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.83 E-value=0.06 Score=61.06 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.5
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.+.++..-+|+|||.+|||||||++.|.+-
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4455666778999999999999999999875
No 449
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.76 E-value=0.13 Score=58.46 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=27.3
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|||+.|+|||||++.|.+.-
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 45566777789999999999999999999863
No 450
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.68 E-value=0.17 Score=44.03 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred eEEEEecCCCcHHHHHHHHHc
Q 016700 178 DVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~ 198 (384)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 451
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.62 E-value=0.19 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|.|++||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 452
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.61 E-value=0.17 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.8
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|.|.|+||+|||||+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999753
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.56 E-value=0.18 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.9
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|.|.+||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999973
No 454
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.46 E-value=0.17 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEEecCCCcHHHHHHHHHcCCC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHAKP 201 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~~~ 201 (384)
-++|+|+.|||||||++.|.+...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999999999998754
No 455
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.33 E-value=0.18 Score=43.79 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|.||+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.32 E-value=0.15 Score=52.53 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
....|+|+|++|||||||+++|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4456999999999999999999865
No 457
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.26 E-value=0.19 Score=45.09 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.8
Q ss_pred hhhcc---eEEEEecCCCcHHHHHHHHHcC
Q 016700 173 LRVVA---DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 173 lk~~~---~V~lvG~pnaGKSSLln~L~~~ 199 (384)
++.++ .+.+.|+||+||||+..+|...
T Consensus 52 ~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 52 LKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 34455 5999999999999999888753
No 458
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.21 E-value=0.2 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999985
No 459
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.21 E-value=0.21 Score=45.45 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
++++|+|.|+|||||+...|..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 460
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.17 E-value=0.041 Score=50.10 Aligned_cols=21 Identities=48% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEecCCCcHHHHHHHHHcC
Q 016700 179 VGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~~~ 199 (384)
++|+|++|||||||+++|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999875
No 461
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.12 E-value=1.1 Score=40.61 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=45.0
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 308 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl 308 (384)
.++|+|+|.... ......+..||.+|+|+..+. ........+.+.+..+.. +.++.+|+|+++.
T Consensus 146 D~viiD~pp~~~---------~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~---~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 146 DYIVIDTNPSLD---------VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNL---FLPIFLIITRFKK 209 (267)
T ss_dssp SEEEEEECSSCS---------HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTC---CCCEEEEEEEECT
T ss_pred CEEEEECcCCcc---------HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhc---cCCEEEEEecccC
Confidence 689999998642 234455677999999998754 344555666666766542 4578899999953
No 462
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.12 E-value=0.08 Score=58.02 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.5
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.+.++..-.++|+|+.|||||||++.|++..
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45666677789999999999999999999864
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.11 E-value=0.14 Score=43.13 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...|.|.|+||+|||+|+.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998754
No 464
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.04 E-value=0.056 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=22.4
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHH
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~ 197 (384)
.+++... .++|+|..|||||||+++|.
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3455556 79999999999999999885
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.94 E-value=0.23 Score=44.76 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.6
Q ss_pred hhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 174 RVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 174 k~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+...-|.|+|+|||||+|....|...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33334678999999999999999753
No 466
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.92 E-value=0.44 Score=45.49 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=20.9
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...+.|.|+||+|||++++.+...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999754
No 467
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.86 E-value=0.13 Score=58.09 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.8
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.++|+|++|||||||++.|.+..
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666789999999999999999998764
No 468
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.82 E-value=0.96 Score=44.88 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|..+|...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999864
No 469
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.75 E-value=0.18 Score=57.08 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=27.0
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHcCC
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
+.++++..-.|+|+|+.|||||||++.|.+-.
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44556667789999999999999999999853
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.68 E-value=0.13 Score=56.34 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=24.5
Q ss_pred hHHhhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 170 ELILRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 170 ~l~lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.+.++..-.++|+|+.|||||||++.|.+.
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555567999999999999999999853
No 471
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.65 E-value=0.27 Score=42.82 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.4
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-+.|.|++|+|||||+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998753
No 472
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.55 E-value=0.99 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|.||+|||+|+.+|...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999764
No 473
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.45 E-value=0.25 Score=44.00 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.4
Q ss_pred eEEEEecCCCcHHHHHHHHH
Q 016700 178 DVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~ 197 (384)
-++|+|.||+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999977664
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.23 E-value=0.25 Score=43.61 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.4
Q ss_pred EEEEecCCCcHHHHHHHHH
Q 016700 179 VGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 179 V~lvG~pnaGKSSLln~L~ 197 (384)
.+|+|+.++|||||+.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999985
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.08 E-value=0.23 Score=49.09 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|+|+||||||||.+.|...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999753
No 476
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.04 E-value=1.1 Score=39.76 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=44.8
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.++|+|+|+.... .....+..||.+++|+..+. ........+.+.+..+.. ....+.+|+|++|...
T Consensus 120 D~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 120 DYIIVDFGASIDH---------VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEFEK--PISRIEIILNRADTNS 186 (245)
T ss_dssp SEEEEEEESSCCT---------THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTCSS--CCSCEEEEEESTTSCT
T ss_pred CEEEEeCCCCCch---------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhCC--CccceEEEEecCCCCC
Confidence 6899999986431 23455778999999998753 233444555566655432 2356889999998653
No 477
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.75 E-value=0.25 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||||++++...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 478
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.71 E-value=0.27 Score=42.36 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..+.|.|++|+|||+|+..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999753
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.48 E-value=0.31 Score=47.33 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHc
Q 016700 177 ADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~ 198 (384)
..|+|+|++|+|||||...|..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4599999999999999998875
No 480
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.46 E-value=0.27 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.3
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHH
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~ 197 (384)
.+...+|.|+|.+++|||||++.+.
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHH
Confidence 3567899999999999999998863
No 481
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.38 E-value=0.12 Score=54.36 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=22.9
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHH
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAIT 197 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~ 197 (384)
+.+.+...-.++|+|+.|||||||++.+.
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 34555566679999999999999998653
No 482
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.32 E-value=0.29 Score=47.20 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred hhhcceEEEEecCCCcHHHHHHHHHcC
Q 016700 173 LRVVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 173 lk~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+...--+.|+|.+|+|||||+..|...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344456899999999999999999865
No 483
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.18 E-value=0.3 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 484
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.06 E-value=1.4 Score=43.97 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.3
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
+.-|.|.|+||+|||||.+.|...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999865
No 485
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.81 E-value=0.31 Score=45.66 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-|.|.|+||+|||+|+++|.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45999999999999999999864
No 486
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.69 E-value=0.33 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.0
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|.|.|+||+|||+|..++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3667799999999999999864
No 487
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.66 E-value=0.43 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
..+.|.|+||+|||||+++|...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999864
No 488
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.58 E-value=0.37 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.0
Q ss_pred cceEEEEecCCCcHHHHHHHHHcC
Q 016700 176 VADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 176 ~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
++.+.|.|+||+|||||+.+|.+.
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999864
No 489
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.43 E-value=0.28 Score=50.01 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=25.4
Q ss_pred hhHHhhhcceEEEEecCCCcHHHHHHHHHc
Q 016700 169 LELILRVVADVGLVGLPNAGKSTLLAAITH 198 (384)
Q Consensus 169 ~~l~lk~~~~V~lvG~pnaGKSSLln~L~~ 198 (384)
+.+.|.....++|+|.+|+|||+++++|..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 445566789999999999999999999864
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.39 E-value=0.3 Score=49.65 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=20.8
Q ss_pred HhhhcceEEEEecCCCcHHHHHHHH
Q 016700 172 ILRVVADVGLVGLPNAGKSTLLAAI 196 (384)
Q Consensus 172 ~lk~~~~V~lvG~pnaGKSSLln~L 196 (384)
.+...--++|+|.+|||||||++.|
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3445557999999999999999994
No 491
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.33 E-value=0.35 Score=43.20 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.0
Q ss_pred ceEEEEecCCCcHHHHHHHHHcCC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHAK 200 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~~ 200 (384)
.-|+|+|++++|||||...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998753
No 492
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.26 E-value=0.34 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHcC
Q 016700 177 ADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 177 ~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.-+.|.|+||+|||||++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999863
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.17 E-value=0.4 Score=43.10 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-|+|.|.+||||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999865
No 494
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.14 E-value=1.4 Score=39.77 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 311 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~~ 311 (384)
.++|+|+|+... ......+..||.+|+|++.+. ........+.+.+.... ....-+|+|++|....
T Consensus 112 D~viiD~~~~~~---------~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 112 DILLLDAPAGLE---------RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERLG----TKVLGVVVNRITTLGI 177 (263)
T ss_dssp SEEEEECCSSSS---------HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHHT----CEEEEEEEEEECTTTH
T ss_pred CEEEEeCCCCCC---------hHHHHHHHHCCEEEEEeCCCh-hHHHHHHHHHHHHHhcC----CCeeEEEEccCCcccc
Confidence 689999997532 233455677999999988653 22334444555555431 2456799999997543
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.11 E-value=0.24 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.7
Q ss_pred hcceEEEEecCCCcHHHHHHHHHcC
Q 016700 175 VVADVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 175 ~~~~V~lvG~pnaGKSSLln~L~~~ 199 (384)
...-|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999865
No 496
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.04 E-value=0.35 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
-+.|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999864
No 497
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.91 E-value=2.1 Score=38.69 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=40.8
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCC-CCCCCE-EEEEeCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPF-IVVLNKIDLP 309 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~~p~-ivV~NK~Dl~ 309 (384)
.++|+|||+.... .....+..||.+|+|++.+.. .......+.+.+...... ..+.++ -+|+|+.|..
T Consensus 113 D~iiiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 113 DLVLLDAPPSLSP---------LTLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp SEEEEECCSSCCH---------HHHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CEEEEeCCCCCCH---------HHHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 7999999986431 233445679999999987642 233333333444322100 013455 4899999865
Q ss_pred C
Q 016700 310 E 310 (384)
Q Consensus 310 ~ 310 (384)
.
T Consensus 183 ~ 183 (257)
T 1wcv_1 183 T 183 (257)
T ss_dssp C
T ss_pred c
Confidence 4
No 498
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=85.83 E-value=1.2 Score=39.48 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=42.8
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 310 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~Dl~~ 310 (384)
.++|+|+|+... ......+..||.+|+|++.+. ........+.+.+.... .....+|+|+.|...
T Consensus 113 D~viiD~~~~~~---------~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 113 DFILIDCPAGLQ---------LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKAG----LAILGFVLNRYGRSD 177 (237)
T ss_dssp SEEEEECCSSSS---------HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHTT----CEEEEEEEEEETSCT
T ss_pred CEEEEECCCCcC---------HHHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhCC----CceEEEEEecCCccc
Confidence 689999998643 234556788999999998753 22334444555555431 245678999998643
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.52 E-value=0.42 Score=42.04 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHHcC
Q 016700 178 DVGLVGLPNAGKSTLLAAITHA 199 (384)
Q Consensus 178 ~V~lvG~pnaGKSSLln~L~~~ 199 (384)
.|+|+|.+||||||+.+.|...
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 500
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.45 E-value=1.1 Score=39.70 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=40.8
Q ss_pred ceEEEeCCCCccccccccchhHHHHHHcccCCeEEEEeeCCCCCCHhHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 016700 232 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 307 (384)
Q Consensus 232 ~i~i~DtPG~~~~a~~~~gl~~~fl~~i~~ad~il~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~~p~ivV~NK~D 307 (384)
.++|+|||+.... .....+..||.+|+|++.+. ........+.+.+..+. -..+.+|+|+.+
T Consensus 133 D~viiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~~----~~~~~~v~N~~~ 194 (254)
T 3kjh_A 133 EAVVMDMGAGIEH---------LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDLG----IKKVRYVINKVR 194 (254)
T ss_dssp SEEEEEECTTCTT---------CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHHT----CSCEEEEEEEEC
T ss_pred CEEEEeCCCcccH---------HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHcC----CccEEEEEeCCC
Confidence 7899999976432 22344678999999998753 22344444444444432 255889999998
Done!