Citrus Sinensis ID: 016701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYLR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEccccccEEEEccHHHHHHHHccccccccHHHHHHHHHccccEEcccccEEEEccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccHEccHHHHHcHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHccccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
megvrvkeeeTVTYAATTataasasssssssnfmpqpleglhdagpppfltKTYEMVEDLSTDAIVSWSRTRnsfivwdshqfsttllpkyfkhsnfsSFIRQLNtygfrkvdpdrwefanegflgGQKHLLKTIKRRRHVSQSMQQRGGEAclevgqygldgelerlKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRrelggvqtgrkrrltatpsmenLQETisvapvgldcgpvvdytvqdqnelTSMETEIETFlsspvdnesssdidnpnagsvpapsggnfssvnETIWEDfmaddliagdpeevvvkDQSEAEVELEDlvatptdwGEELQDLVDQMGYLR
Flexible Loop (DISEMBL)
megvrvkeeeTVTYAATtataasassssssSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRlrqhqqqsrdQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAhrrelggvqtgrkrrltatpsmenlQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKDQSEAEVELEdlvatptdwgeELQDLVDQMGYLR
Low Complexity Region (SEG)
MEGVRVKEEETVTYaattataasasssssssNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYLR
Disordered region (IsUnstruct)
************************************************FLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKR*************EACLEVGQYGLDGELERLKRDRNVLMAEIVR******************************************************************************TISVAPVGLDCGPVVDYTVQ***********************************************NETIWEDFMADDLIAGDPEEVVV***********DLVATPTDWG**************
Disordered Region (DISOPRED)
*************************************************LTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLL**********************************************IVRLRQHQQQSRDQLSAME*******KKQQQMMTFLAKAL***********************************************************************************************************************************************LVATPTDWGEELQDLVDQMGYL*
Disordered Region (DISEMBL)
*********ETVTYAAT*****************PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKR************GEACLEVGQYGLDGELERLKRDRNVLMAEIVRL*************MEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFL*************NPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYLR
Disordered Region (DISPRO)
**GVRVKEEETVTYAA*******************QP*E*LHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRR********************YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRE****************************************************************************************SVNETIWEDFMADDLIA**********QSEAEVELEDLVATPTDWGEELQDLVDQMGYLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGExxxxxxxxxxxxxxxxxxxxxQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
P41152	351	Heat shock factor protein	N/A	no	0.859	0.940	0.595	1e-113
O80982	345	Heat stress transcription	yes	no	0.794	0.884	0.529	1e-102
Q6VBB2	372	Heat stress transcription	yes	no	0.872	0.900	0.451	5e-83
Q6F388	357	Heat stress transcription	no	no	0.640	0.689	0.536	7e-77
Q338B0	358	Heat stress transcription	no	no	0.697	0.748	0.532	9e-77
Q9LUH8	406	Heat stress transcription	no	no	0.588	0.556	0.557	2e-75
Q84MN7	376	Heat stress transcription	no	no	0.635	0.648	0.553	4e-74
Q8H7Y6	359	Heat stress transcription	no	no	0.520	0.557	0.610	9e-73
Q84T61	506	Heat stress transcription	no	no	0.526	0.399	0.599	2e-69
P41151	495	Heat stress transcription	no	no	0.544	0.422	0.548	5e-67

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/349 (59%), Positives = 261/349 (74%), Gaps = 19/349 (5%)

Query: 37  PLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSN 96
           P+EGLHD GPPPFL+KTYEMVED STD ++SWS TRNSFIVWDSH+FSTTLLP++FKHSN
Sbjct: 20  PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSN 79

Query: 97  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEV 156
           FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR+V QSM Q+G  AC+E+
Sbjct: 80  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEI 139

Query: 157 GQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 216
           G YG++ ELERLKRD+NVLM EIV+LRQ QQ +R+Q+ AM +++ + E+KQ QMM+FLAK
Sbjct: 140 GYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAK 199

Query: 217 ALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDY 276
              NP+F QQ      HR++   ++ G+KRRLT TPS+     T S  P+          
Sbjct: 200 IFSNPTFLQQYLDKQVHRKDKQRIEVGQKRRLTMTPSV-----TGSDQPMNYSSS----- 249

Query: 277 TVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMA 336
             + + EL S    IE   S+ +DNESSS++  P+  SV   +G +   V + IWE+ ++
Sbjct: 250 LQESEAELAS----IEMLFSAAMDNESSSNV-RPD--SVVTANGTDMEPVADDIWEELLS 302

Query: 337 DDLIAGD--PEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYL 383
           +DLI+GD   EEVVV +Q E +VE+EDLV    +WGEELQDLVDQ+G+L
Sbjct: 303 EDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGFL 351

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Solanum peruvianum (taxid: 4082)

>sp|O80982|HSFA2_ARATH Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/355 (52%), Positives = 249/355 (70%), Gaps = 50/355 (14%)

Query: 35  PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
           P+P+EGL++ GPPPFLTKTYEMVED +TD +VSWS  RNSF+VWDSH+FSTTLLP+YFKH
Sbjct: 31  PRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKH 90

Query: 95  SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVS-QSMQQRG-GEA 152
           SNFSSFIRQLNTYGFRK+DPDRWEFANEGFL GQKHLLK IKRRR++  Q++ Q+G G +
Sbjct: 91  SNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMS 150

Query: 153 CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 212
           C+EVGQYG DGE+ERLKRD  VL+AE+VRLRQ Q  S+ Q++AME RLL TEK+QQQMMT
Sbjct: 151 CVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMT 210

Query: 213 FLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGP 272
           FLAKAL NP+F QQ A  +  ++ L G+  GRKRRLT+TPS+  ++E +           
Sbjct: 211 FLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENL----------- 259

Query: 273 VVDYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWE 332
                + DQ E   M+ ++E   ++ +D+E+++        S+P        ++N     
Sbjct: 260 -----LHDQ-EFDRMKDDMEMLFAAAIDDEANN--------SMPTKEEQCLEAMN----- 300

Query: 333 DFMADDLIAGDPEEVVVKD---QSEAEVELEDLVATPTDW-GEELQDLVDQMGYL 383
                         V+++D   ++  +V++EDLV +P DW  ++L D+VDQMG+L
Sbjct: 301 --------------VMMRDGNLEAALDVKVEDLVGSPLDWDSQDLHDMVDQMGFL 341

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  308 bits (789), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/354 (45%), Positives = 227/354 (64%), Gaps = 19/354 (5%)

Query: 6   VKEEET-VTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDA 64
           VKEEE+          A    +++ ++   P+P+EGLHDAGPPPFLTKTY+MV+D  TDA
Sbjct: 9   VKEEESHGDGGGLEVVAGEDGAAAVAAGVAPRPMEGLHDAGPPPFLTKTYDMVDDAGTDA 68

Query: 65  IVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGF 124
            VSWS T NSF+VWD H F+T LLP++FKH+NFSSF+RQLNTYGFRKVDPDRWEFANE F
Sbjct: 69  AVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENF 128

Query: 125 LGGQKHLLKTIKRRR---HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVR 181
           L GQ+HLLK IKRR+   H + + Q  G    LEVG +G D E++RLKRD+ +LMAE+V+
Sbjct: 129 LRGQRHLLKNIKRRKPPSHTASNQQSLG--PYLEVGHFGYDAEIDRLKRDKQLLMAEVVK 186

Query: 182 LRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRREL-GGV 240
           LRQ QQ ++  L AMEDRL  TE++QQQMM FLA+ +KNP F +QL   N  R+EL   +
Sbjct: 187 LRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMRKELQDAI 246

Query: 241 QTGRKRRLTATPSMENLQETISV---APVGLDCGPVVDYTVQDQNELTSMETEIETFLSS 297
              R+RR+   P ++++  + S+   +P   D    V++ +        + +++E   +S
Sbjct: 247 SKKRRRRIDQGPEVDDVGTSSSIEQESPALFDPQESVEFLI------DGIPSDLE---NS 297

Query: 298 PVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKD 351
            +D     +  + + G+      G    +N+  WE+ + + L+  + +  VV+D
Sbjct: 298 AMDAGGLVEPQDFDVGASEQQQIGPQGELNDNFWEELLNEGLVGEENDNPVVED 351

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  288 bits (736), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 180/248 (72%), Gaps = 2/248 (0%)

Query: 12  VTYAATTATAASASSSSSSSNFMP-QPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSR 70
           + Y         +  S+  +N  P +P++GL D GPPPFLTKTY+MV+D +TDA+VSWS 
Sbjct: 1   MNYRVVNPVKVESGPSTGVANGQPPRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSA 60

Query: 71  TRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKH 130
           T NSF+VWD H F   LLP+YFKH+NFSSF+RQLNTYGFRKVDPD+WEFANEGFL GQKH
Sbjct: 61  TNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKH 120

Query: 131 LLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSR 190
           LLK+IKRR+  + S  Q+   + LEVG +G +GE+++LKRD+++LMAE+V+LRQ QQ ++
Sbjct: 121 LLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTK 180

Query: 191 DQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGG-VQTGRKRRLT 249
             L AME +L  TE+KQQ MM FL++ + NP F +QL   +  R+EL   V   R+RR+ 
Sbjct: 181 SDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRID 240

Query: 250 ATPSMENL 257
             P ++++
Sbjct: 241 QGPELDSM 248

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2

 Score =  287 bits (735), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 146/274 (53%), Positives = 193/274 (70%), Gaps = 6/274 (2%)

Query: 35  PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
           P+P+EGLH+ GPPPFLTKTY++VED +TD +VSWSR  NSF+VWD H F+  LLP+ FKH
Sbjct: 29  PRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKH 88

Query: 95  SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS--MQQRGGEA 152
           +NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQ+HLLKTIKRR+  S +   QQ+   +
Sbjct: 89  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTS 148

Query: 153 CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 212
           CLEVG++G + E++RLKRD+N+L+ E+V+LRQ QQ ++D + AMEDRL + E+KQ QMM 
Sbjct: 149 CLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMG 208

Query: 213 FLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISV----APVGL 268
           FLA+A++NP FFQQLAQ    R+EL    + ++RR        +  ET       +P   
Sbjct: 209 FLARAMRNPEFFQQLAQQKEKRKELEDAISKKRRRPIDNVPFYDPGETSQTEQLDSPYLF 268

Query: 269 DCGPVVDYTVQDQNELTSMETEIETFLSSPVDNE 302
           D G + + +     EL ++   I+      VD E
Sbjct: 269 DSGVLNELSEPGIPELENLAVNIQDLGKGKVDEE 302

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/235 (55%), Positives = 179/235 (76%), Gaps = 9/235 (3%)

Query: 22  ASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSH 81
           A A+ +  ++   PQPLEGLH++GPPPFLTKTY++VED  T+ +VSWS++ NSFIVWD  
Sbjct: 35  AEAAINDPTTLSYPQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQ 94

Query: 82  QFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV 141
            FS TLLP++FKH+NFSSF+RQLNTYGFRKV+PDRWEFANEGFL GQKHLLK I+RR+  
Sbjct: 95  AFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTS 154

Query: 142 SQSMQQRGGEA---------CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192
           + S Q +  ++         C+EVG+YGLDGE++ L+RD+ VLM E+VRLRQ QQ ++  
Sbjct: 155 NNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMY 214

Query: 193 LSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRR 247
           L+ +E++L  TE KQ+QMM+FLA+A++NP F QQL +    R+E+    + +++R
Sbjct: 215 LTLIEEKLKKTESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQR 269

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q84MN7|HFA2A_ORYSJ Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1

 Score =  278 bits (711), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/264 (55%), Positives = 181/264 (68%), Gaps = 20/264 (7%)

Query: 4   VRVKEEET-VTYAATTATAASASSSSSSSNFM--PQPLEGLHDAGPPPFLTKTYEMVEDL 60
           V VKEEE     AA  A A   S SS +   M  P+P+EGL +AGPPPFL KTYE+V+D 
Sbjct: 6   VIVKEEELDFAAAAAAAAAGEGSPSSWAVGVMDLPRPMEGLGEAGPPPFLCKTYEVVDDP 65

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
            TD ++SW    NSF+VWD++ F+  LLP+YFKHSNFSSF+RQLNTYGFRKVDPDRWEFA
Sbjct: 66  GTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFA 125

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQSM------------QQRGGEACLEVGQYGLDGELERL 168
           NEGFL G+K LLKTIKRRR    S             QQ+   ACLEVGQ+G DG + RL
Sbjct: 126 NEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRL 185

Query: 169 KRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQL- 227
           +RD++VL+AE+V+LRQ QQ +R Q+ AME+R+ + E+KQQQM  FLA+A+KNP F Q L 
Sbjct: 186 QRDKSVLIAEVVKLRQEQQTTRAQMQAMEERISAAEQKQQQMTVFLARAMKNPGFLQMLV 245

Query: 228 ----AQSNAHRRELGGVQTGRKRR 247
                Q  A  R L    + ++RR
Sbjct: 246 DRQAGQHGARNRVLEDALSKKRRR 269

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7Y6|HFA2D_ORYSJ Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2

 Score =  274 bits (700), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 159/203 (78%), Gaps = 3/203 (1%)

Query: 27  SSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTT 86
           SS      P+P+EGLH+ GPPPFLTKT+++V D +TD +VSW R  +SF+VWD H F+  
Sbjct: 16  SSPEEGEAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAV 75

Query: 87  LLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQ--S 144
            LP++FKH+NFSSF+RQLNTYGFRK+DPDRWEFAN+GFL GQ+HLLK IKRRR +S    
Sbjct: 76  FLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPG 135

Query: 145 MQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204
            QQ  G  CLEVGQ+GLD E++RLKRD+N+L+AE+V+LR  QQ ++  + AME+RL   E
Sbjct: 136 SQQALG-TCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAE 194

Query: 205 KKQQQMMTFLAKALKNPSFFQQL 227
           +KQ QMM FLA+A++NP FF QL
Sbjct: 195 QKQVQMMGFLARAMQNPDFFHQL 217

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 158/212 (74%), Gaps = 10/212 (4%)

Query: 45  GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQL 104
            PPPFL KTYEMV+D +TDA+VSW    NSF+VW++ +F+  LLPKYFKHSNFSSF+RQL
Sbjct: 34  APPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQL 93

Query: 105 NTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQ-----RGGEACLEVG 157
           NTYGFRKVDPDRWEFANEGFL GQKHLLKTI RR+  H +  +QQ         AC+EVG
Sbjct: 94  NTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVG 153

Query: 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217
           ++G++ E+E LKRD+NVLM E+VRLRQ QQ +  QL  +  RL   E++QQQMM+FLAKA
Sbjct: 154 KFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKA 213

Query: 218 LKNPSFFQQLAQSNAH-RRELGGVQTGRKRRL 248
           + +P F  Q  Q N + RR +  V + +KRRL
Sbjct: 214 MHSPGFLAQFVQQNENSRRRI--VASNKKRRL 243

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  255 bits (651), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 129/235 (54%), Positives = 161/235 (68%), Gaps = 26/235 (11%)

Query: 35  PQPLEGLH-DAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFK 93
           P P   L+ ++ PPPFL+KTY+MVED +TDAIVSWS T NSFIVWD  +FS  LLPKYFK
Sbjct: 38  PHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFK 97

Query: 94  HSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV------------ 141
           H+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLK I RR+ V            
Sbjct: 98  HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQS 157

Query: 142 ----SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 197
                         +C+EVG++GL+ E+E+LKRD+NVLM E+V+LRQ QQ + ++L  + 
Sbjct: 158 QQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLV 217

Query: 198 DRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQ----SNAHRRELGGVQTGRKRRL 248
             L   E++QQQ+M+FLAKA++NP+F  Q  Q    SN H  E       +KRRL
Sbjct: 218 KHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTE-----ANKKRRL 267

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
224092170	345	predicted protein [Populus trichocarpa]	0.888	0.988	0.704	1e-139
385880839	377	heat shock transcription factor A2 [Viti	0.960	0.978	0.663	1e-137
225429510	388	PREDICTED: heat shock factor protein HSF	0.960	0.951	0.663	1e-136
255550065	371	Heat shock factor protein HSF30, putativ	0.898	0.929	0.710	1e-133
356506986	372	PREDICTED: heat shock factor protein HSF	0.942	0.973	0.570	1e-124
356552370	364	PREDICTED: heat shock factor protein HSF	0.934	0.986	0.605	1e-124
357465753	378	Heat stress transcription factor A-2 [Me	0.958	0.973	0.605	1e-123
356564043	355	PREDICTED: heat stress transcription fac	0.901	0.974	0.582	1e-121
406047594	362	heat stress transcription factor A2 [Cap	0.888	0.941	0.610	1e-120
449450361	364	PREDICTED: heat shock factor protein HSF	0.932	0.983	0.596	1e-118

>gi|224092170|ref|XP_002309492.1| predicted protein [Populus trichocarpa] gi|222855468|gb|EEE93015.1| predicted protein [Populus trichocarpa]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/348 (70%), Positives = 289/348 (83%), Gaps = 7/348 (2%)

Query: 38  LEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNF 97
           +EGL++ GPPPFLTKTYEMVED STD +VSWS  RNSFIVWDSH+FSTTLLPK+FKHSNF
Sbjct: 1   MEGLNEVGPPPFLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSHKFSTTLLPKHFKHSNF 60

Query: 98  SSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVG 157
           SSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKR+RH+SQ+ QQ+GG AC+E+G
Sbjct: 61  SSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRKRHLSQTTQQQGGGACIELG 120

Query: 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217
           Q+  +GELERLKRDRNVLMAEIVRLRQ QQQSR+ ++AMEDRL STE+KQQ++MTFLAKA
Sbjct: 121 QFEFEGELERLKRDRNVLMAEIVRLRQQQQQSREHIAAMEDRLRSTERKQQRVMTFLAKA 180

Query: 218 LKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYT 277
           L NPSF +Q AQ  A RRE+ GV+ GRKRRLTA+PS+ENLQE   VA V L     VDY 
Sbjct: 181 LNNPSFIEQFAQRAAQRREIRGVEIGRKRRLTASPSVENLQE---VASVALGSSQFVDYM 237

Query: 278 VQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGN-FSSVNETIWEDFMA 336
            QD   L ++E E+ET  S+ +DNESSSDI +P A S+   SGG+   +VNETIWE+ + 
Sbjct: 238 NQD---LPTIENEMETLFSAVLDNESSSDIKDPIASSMDTASGGSTLDAVNETIWEELLT 294

Query: 337 DDLIAGDPEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYLR 384
           DDL++G+P EVVV D+ E +VE+EDLVA P DW ++ QDLVDQMGYLR
Sbjct: 295 DDLVSGEPNEVVVSDEPEVDVEVEDLVAKPVDWSDDFQDLVDQMGYLR 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385880839|gb|AFI98399.1| heat shock transcription factor A2 [Vitis vinifera]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/389 (66%), Positives = 299/389 (76%), Gaps = 20/389 (5%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           M+GV VKEEE V     + T  S+SSSSSS  F P PLEGLH+ GPPPFLTKT++MVED 
Sbjct: 1   MDGVMVKEEEPVV----SWTMGSSSSSSSSPGFAPHPLEGLHEVGPPPFLTKTFDMVEDP 56

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
           +TD++VSWSR RNSFIVWDSH+FSTTLLP+YFKHSNFSSFIRQLNTYGFRKVDPDRWEFA
Sbjct: 57  ATDSVVSWSRARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 116

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIV 180
           NEGFLGGQKHLLK IKRRRHVSQ+ QQ G  AC+E+GQYGL+ ELERLKRDRNVLMAEI 
Sbjct: 117 NEGFLGGQKHLLKNIKRRRHVSQNTQQGGLGACVELGQYGLEDELERLKRDRNVLMAEIG 176

Query: 181 RLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGV 240
           +LRQ QQ SR++L AME R+ +TEKKQ QMMTFLAKAL NPSF QQ  Q    RREL G 
Sbjct: 177 KLRQQQQNSRNELVAMEGRMQNTEKKQMQMMTFLAKALNNPSFVQQFIQ---QRRELRGA 233

Query: 241 QTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVD 300
           + GRKRRLT + S ENLQE I+VA +         YT QD  +++ +E+EIETF S   D
Sbjct: 234 EIGRKRRLTTSQSAENLQEVITVASI----DQAFSYTNQDDGDMSGIESEIETFFSGGWD 289

Query: 301 NESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVV---VKDQSEAE- 356
           NESS DI +P A S+      N  SVN+ IWE+ ++DDLIAG+ EEV    + D  E E 
Sbjct: 290 NESSEDIKDPKADSI----DNNLGSVNDVIWEELLSDDLIAGNEEEVPPLRLGDHHEPET 345

Query: 357 -VELEDLVATPTDWGEELQDLVDQMGYLR 384
            VE+EDLVATP+DWGE+ QDLVDQM +LR
Sbjct: 346 DVEVEDLVATPSDWGEDFQDLVDQMAFLR 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429510|ref|XP_002278709.1| PREDICTED: heat shock factor protein HSF30-like [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/389 (66%), Positives = 299/389 (76%), Gaps = 20/389 (5%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           M+GV VKEEE V     + T  S+SSSSSS  F P PLEGLH+ GPPPFLTKT++MVED 
Sbjct: 1   MDGVMVKEEEPVV----SWTMGSSSSSSSSPGFAPHPLEGLHEVGPPPFLTKTFDMVEDP 56

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
           +TD++VSWSR RNSFIVWDSH+FSTTLLP+YFKHSNFSSFIRQLNTYGFRKVDPDRWEFA
Sbjct: 57  ATDSVVSWSRARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 116

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIV 180
           NEGFLGGQKHLLK IKRRRHVSQ+ QQ G  AC+E+GQYGL+ ELERLKRDRNVLMAEI 
Sbjct: 117 NEGFLGGQKHLLKNIKRRRHVSQNTQQGGLGACVELGQYGLEDELERLKRDRNVLMAEIG 176

Query: 181 RLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGV 240
           +LRQ QQ SR++L AME R+ +TEKKQ QMMTFLAKAL NPSF QQ  Q    RREL G 
Sbjct: 177 KLRQQQQNSRNELVAMEGRMQNTEKKQMQMMTFLAKALNNPSFVQQFIQ---QRRELRGA 233

Query: 241 QTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVD 300
           + GRKRRLT + S ENLQE I+VA +         YT QD  +++ +E+EIETF S   D
Sbjct: 234 EIGRKRRLTTSQSAENLQEVITVASI----DQAFSYTNQDDGDMSGIESEIETFFSGGWD 289

Query: 301 NESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEEVV---VKDQSEAE- 356
           NESS DI +P A S+      N  SVN+ IWE+ ++DDLIAG+ EEV    + D  E E 
Sbjct: 290 NESSEDIKDPKADSI----DNNLGSVNDVIWEELLSDDLIAGNEEEVPPLRLGDHHEPET 345

Query: 357 -VELEDLVATPTDWGEELQDLVDQMGYLR 384
            VE+EDLVATP+DWGE+ QDLVDQM +LR
Sbjct: 346 DVEVEDLVATPSDWGEDFQDLVDQMAFLR 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550065|ref|XP_002516083.1| Heat shock factor protein HSF30, putative [Ricinus communis] gi|223544569|gb|EEF46085.1| Heat shock factor protein HSF30, putative [Ricinus communis]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/352 (71%), Positives = 290/352 (82%), Gaps = 7/352 (1%)

Query: 35  PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
           PQP EGLH+ GPPPFLTKT+EMVED STD++VSWSR RNSFIVWDSH+FSTTLLPKYFKH
Sbjct: 22  PQPKEGLHEMGPPPFLTKTFEMVEDPSTDSVVSWSRARNSFIVWDSHKFSTTLLPKYFKH 81

Query: 95  SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACL 154
           SNFSSFIRQLNTYGFRK+DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQ+ G A +
Sbjct: 82  SNFSSFIRQLNTYGFRKIDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQQSGGAYV 141

Query: 155 EVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214
           E+G++GLDGELERLKRDRNVL  EI+RLRQ QQQSR+Q++AMEDRLLSTEKKQQQ+  FL
Sbjct: 142 ELGKFGLDGELERLKRDRNVLTVEIIRLRQQQQQSREQIAAMEDRLLSTEKKQQQITAFL 201

Query: 215 AKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVV 274
           AKAL NPSF QQ AQ +A R EL GV  G KRRL A+PS+ENL+E  +   VG+  G VV
Sbjct: 202 AKALNNPSFIQQFAQRSAQREELRGVGVGHKRRLAASPSVENLEEEAASGSVGI--GQVV 259

Query: 275 DYTVQDQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGN-FSSVNETIWED 333
           DYT +    L +M TEIETFLS+ +DNESS+D+ +  AGS    SG +   S NET WED
Sbjct: 260 DYTDEG---LETMGTEIETFLSAALDNESSTDVRDSIAGSGQGSSGMDKLGSFNETAWED 316

Query: 334 FMADDLIAGDP-EEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYLR 384
            + DD+IA +P EE +  +++E +VE+EDLVA P DWGE+LQDLVDQMGYLR
Sbjct: 317 LLNDDIIAQNPDEETIPSEEAELDVEVEDLVANPEDWGEDLQDLVDQMGYLR 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506986|ref|XP_003522253.1| PREDICTED: heat shock factor protein HSF30-like isoform 1 [Glycine max] gi|356506988|ref|XP_003522254.1| PREDICTED: heat shock factor protein HSF30-like isoform 2 [Glycine max] gi|402715725|gb|AFQ93676.1| heat shock transcription factor HSFA2 [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/389 (57%), Positives = 292/389 (75%), Gaps = 27/389 (6%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           M+GV VK EET+ YA      A+++S ++SSN  PQP+EGLH+ GPPPFLTKT+++VED 
Sbjct: 1   MKGVTVKVEETMAYAN-----AASTSPTTSSNLSPQPMEGLHEVGPPPFLTKTFDVVEDP 55

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
           ST+ IVSWSR+RNSF+VWDSH+FSTT+LP+YFKH+NFSSF+RQLNTYGFRK+DPD+WEFA
Sbjct: 56  STNDIVSWSRSRNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFA 115

Query: 121 NEGFLGGQKHLLKTIKRRRH--VSQSMQQRGGE-ACLEVGQYGLDGELERLKRDRNVLMA 177
           NEGFL GQ+ LLKTIKRRRH  V+Q+    GG  AC+E+G++GL+GE+ERL+RDR VLMA
Sbjct: 116 NEGFLAGQRQLLKTIKRRRHVTVTQTQSHEGGSGACVELGEFGLEGEMERLRRDRTVLMA 175

Query: 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRREL 237
           EIVRLRQ Q  SR+QL +ME RL +TEKK QQMM FLAKAL N +F QQ  Q NA  +EL
Sbjct: 176 EIVRLRQQQHNSREQLLSMETRLQATEKKHQQMMNFLAKALNNQAFIQQFLQRNAQNKEL 235

Query: 238 GGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSS 297
            G +  RKRRLTATPS+ENLQ+                + +  +    ++E+++E+F S+
Sbjct: 236 QGAR--RKRRLTATPSVENLQQD--------------HFALSIEEGSATIESQMESFFSA 279

Query: 298 PVDN--ESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDP-EEVVVKDQSE 354
             ++  ES+S++ +P   SVP  SG N   V++++WED +  DL+AGDP EEVV+ D S+
Sbjct: 280 ACNDPLESNSELKDPILSSVPVASGSNLGEVSDSVWEDLLNQDLVAGDPEEEVVIGDFSQ 339

Query: 355 AEVELEDLVATPTDWGEELQDLVDQMGYL 383
            +V +EDL+A   +W E+LQ+LVD MGYL
Sbjct: 340 VDVPVEDLIADADEWSEDLQNLVDHMGYL 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552370|ref|XP_003544541.1| PREDICTED: heat shock factor protein HSF30-like [Glycine max]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/385 (60%), Positives = 290/385 (75%), Gaps = 26/385 (6%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           ME +RVKEEE VT    +++++S+SSS S     PQP+EGLH+ GPPPFL+K ++MVED 
Sbjct: 3   MERIRVKEEEAVTCGGGSSSSSSSSSSFS-----PQPMEGLHEVGPPPFLSKIFDMVEDS 57

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
           STD+IVSWS  RNSF+VWDSH+FS  +LP+YFKH NFSSFIRQLN YGFRKVDPDRWEFA
Sbjct: 58  STDSIVSWSMARNSFVVWDSHKFSADILPRYFKHGNFSSFIRQLNAYGFRKVDPDRWEFA 117

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGGE-ACLEVGQYGLDGELERLKRDRNVLMAEI 179
           NEGFL GQ+HLLKTIKRRR+VSQS+QQ+GG  AC+EVG++GL+GELERLKRDRN+LMAEI
Sbjct: 118 NEGFLAGQRHLLKTIKRRRNVSQSLQQKGGSGACVEVGEFGLEGELERLKRDRNILMAEI 177

Query: 180 VRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGG 239
           VRLR  Q  SR+QL++ME RL +TEKKQQQMM+FLAKAL NPSF +QL Q     RE+ G
Sbjct: 178 VRLRHQQLNSREQLNSMETRLQATEKKQQQMMSFLAKALSNPSFTKQLVQKTPQSREVLG 237

Query: 240 VQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPV 299
           V+  RKRRLTA+PS+ENLQ+         D    +DY   D++ L +MET+++TF S   
Sbjct: 238 VEINRKRRLTASPSVENLQQD------DQDLA-TLDYPSHDRD-LATMETDMDTFFSPAY 289

Query: 300 DNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPE-EVVVKDQSEAEVE 358
           DNE SS+ + P +            SV +TI EDF+  DL+  +PE EV++ D S+ +V 
Sbjct: 290 DNELSSETNEPAS-----------ISVEDTILEDFLNKDLVTWNPEDEVIIGDSSQVDVP 338

Query: 359 LEDLVATPTDWGEELQDLVDQMGYL 383
           +EDLVA P DW E+LQDLVD M YL
Sbjct: 339 VEDLVANPDDWSEQLQDLVDHMDYL 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465753|ref|XP_003603161.1| Heat stress transcription factor A-2 [Medicago truncatula] gi|355492209|gb|AES73412.1| Heat stress transcription factor A-2 [Medicago truncatula]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/390 (60%), Positives = 300/390 (76%), Gaps = 22/390 (5%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           M+G+RVKEEET+ Y +   + +S+SSS S  N  P+P+EGLH+ GPPPFLTKT+++VED 
Sbjct: 1   MKGIRVKEEETLAYVSVVGSTSSSSSSCS--NLTPKPMEGLHEMGPPPFLTKTFDVVEDP 58

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
           STD+IVSWS  RNSF+VWD H+FST +LP+YFKHSNFSSF+RQLNTYGFRKVDPDRWEFA
Sbjct: 59  STDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFA 118

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQS--MQQRGGEACLEVGQYGLDGELERLKRDRNVLMAE 178
           NEGFL GQ++LLKTIKRRR+++QS  MQQ  G +C+E+G++GL+GE+ERL+RDR VLMAE
Sbjct: 119 NEGFLAGQRNLLKTIKRRRNLTQSQAMQQETGGSCIELGEFGLEGEIERLRRDRAVLMAE 178

Query: 179 IVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELG 238
           IV+LRQ Q  SR+QLSAME RLL TEKK QQMM FLAKAL N SF QQLAQ+    REL 
Sbjct: 179 IVKLRQQQHNSREQLSAMEARLLVTEKKHQQMMNFLAKALSNQSFIQQLAQN----RELK 234

Query: 239 GVQTGRKRRLTATPSMENLQE---TISVAPVGLDCGPVVDYTVQDQNE-LTSMETEIETF 294
           GV+  RKRRLTA+ S+ENLQ     I   P+      VVDY+ Q+Q E LT++E+E+ET 
Sbjct: 235 GVEMKRKRRLTASLSLENLQNDSGAIRAVPI----ESVVDYSCQEQQEGLTTIESEMETL 290

Query: 295 LSSPVDNESSSDIDNPNA-GSVPAPSGGNFSSVNETIWEDFMADDLIAGDPE-EVVVKDQ 352
           LS+  DNESSS++ +  A  SVP    GN S++ + +WED +  +L+ G+PE EVV+ D 
Sbjct: 291 LSA-YDNESSSEVKDYTALSSVPT---GNESNLGDAVWEDLLNQELVGGNPEDEVVIGDF 346

Query: 353 SEAEVELEDLVATPTDWGEELQDLVDQMGY 382
           S+ +V +EDLV    +W  +LQ LVDQMG+
Sbjct: 347 SQIDVPVEDLVEKNDNWTVDLQKLVDQMGF 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564043|ref|XP_003550266.1| PREDICTED: heat stress transcription factor A-2-like [Glycine max]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/386 (58%), Positives = 277/386 (71%), Gaps = 40/386 (10%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           ME +RVKEEE +T     ++++S  S  +      QP+EGLH+ GPPPFL+K ++MVED 
Sbjct: 3   MERIRVKEEEAMTCGGGGSSSSSFISPQA------QPMEGLHEVGPPPFLSKIFDMVEDP 56

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
           STD+IVSWS  RNSF+VWDSH+FS  +LP+YFKH+NFSSFIRQLNTYGFRKVDPD+WEFA
Sbjct: 57  STDSIVSWSMARNSFVVWDSHKFSAHILPRYFKHANFSSFIRQLNTYGFRKVDPDKWEFA 116

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGGE-ACLEVGQYGLDGELERLKRDRNVLMAEI 179
           NEGFL GQ+HLLKTIKRRR+VS S QQ+GG  AC+EVG++GL+GELERLKRDRN+LMAEI
Sbjct: 117 NEGFLAGQRHLLKTIKRRRNVSHSNQQKGGSGACVEVGKFGLEGELERLKRDRNILMAEI 176

Query: 180 VRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRE-LG 238
           VRLR  Q  SRDQLSAME R+ +TEKKQQQMM+FLAKAL NPSF QQL       RE L 
Sbjct: 177 VRLRHQQLNSRDQLSAMEARMQATEKKQQQMMSFLAKALSNPSFMQQLVHKTPQSREVLL 236

Query: 239 GVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSP 298
           GV+  RKRRL A PS+ENLQ                    QD  +L +MET+++TF +  
Sbjct: 237 GVEINRKRRLPACPSVENLQ--------------------QDNQDLATMETDMDTFFAPA 276

Query: 299 VDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPE-EVVVKDQSEAEV 357
            DNE  ++ID P +             V ++I EDF+  DLI G+PE EV++ D ++ +V
Sbjct: 277 YDNEFGNEIDEPAS-----------ILVEDSILEDFLNKDLITGNPEDEVIIGDCTQVDV 325

Query: 358 ELEDLVATPTDWGEELQDLVDQMGYL 383
            +EDLVA P DW E+LQDLVD M YL
Sbjct: 326 PMEDLVANPDDWSEQLQDLVDHMDYL 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406047594|gb|AFS33109.1| heat stress transcription factor A2 [Capsicum annuum]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/349 (61%), Positives = 268/349 (76%), Gaps = 8/349 (2%)

Query: 37  PLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSN 96
           P+EGLHD GPPPFL+KTYE VED STD ++SWSR RNSFIVWDSH+FSTTLLP++FKHSN
Sbjct: 20  PMEGLHDVGPPPFLSKTYETVEDSSTDEVISWSRERNSFIVWDSHKFSTTLLPRFFKHSN 79

Query: 97  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEV 156
           FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR+V QSM Q+G   C+EV
Sbjct: 80  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMSQQGSGPCIEV 139

Query: 157 GQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 216
           G YG++ ELERLKRD+NVLM EIV+LRQ QQ +R+Q+ AM +++ STEKKQ+QM+ FLAK
Sbjct: 140 GYYGMEEELERLKRDKNVLMTEIVKLRQQQQSARNQIIAMGEKIESTEKKQEQMVNFLAK 199

Query: 217 ALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDY 276
              NP+F QQ    +  R++   ++ G+KRRLT TPS+ENLQ+  SVA         ++Y
Sbjct: 200 IFSNPTFLQQYLDKHVQRKDKQRIEVGQKRRLTMTPSIENLQDVASVATA---SDQPMNY 256

Query: 277 TVQDQN-ELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFM 335
           + Q++  ELT++ T+IE   S+ ++NESSS++    + SV   SG +   V E IWE+ +
Sbjct: 257 SNQEREAELTNIGTDIEMLFSAALENESSSNV---RSASVVTASGTDMEPVPENIWEELL 313

Query: 336 ADDLIAGD-PEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYL 383
            DD I+GD  EEV + DQ E  VE+EDLV+    WGEEL+DLVDQ+G+L
Sbjct: 314 GDDHISGDGAEEVPIVDQPEFVVEVEDLVSKTPVWGEELEDLVDQLGFL 362

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450361|ref|XP_004142931.1| PREDICTED: heat shock factor protein HSF30-like [Cucumis sativus] gi|449494431|ref|XP_004159544.1| PREDICTED: heat shock factor protein HSF30-like [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/387 (59%), Positives = 288/387 (74%), Gaps = 29/387 (7%)

Query: 1   MEGVRVKEEETVTYAATTATAASASSSSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDL 60
           M+ ++VK EE++     TATA+S+S SSSSS+  PQP+EGLHD GPPPFLTKT+EMVED 
Sbjct: 1   MDELKVKPEESL---VATATASSSSFSSSSSSVTPQPIEGLHDVGPPPFLTKTFEMVEDP 57

Query: 61  STDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 120
            TD+IVSWSR RNSFIVWD H+FS+TLLP+YFKHSNFSSFIRQLNTYGFRKVDPDRWEFA
Sbjct: 58  LTDSIVSWSRARNSFIVWDYHKFSSTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFA 117

Query: 121 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIV 180
           NEGFLGGQ++LL+TIKRRRH  QS+Q  GG  C+E+GQ+GL+ +LERL+RDR+ LMAE+V
Sbjct: 118 NEGFLGGQRNLLRTIKRRRHSQQSIQHHGG-TCVELGQFGLEADLERLRRDRSTLMAELV 176

Query: 181 RLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGV 240
           RLRQ  Q SRD++  MEDRL   E KQ+Q+MTFL+KALKNPSF Q+   SN   REL GV
Sbjct: 177 RLRQQHQSSRDKIMTMEDRLEKAESKQKQIMTFLSKALKNPSFIQKFINSN-QGRELRGV 235

Query: 241 QTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVD 300
           + GRKRRLTA+PS+ENL +     PV L            Q EL + E +IET L+   +
Sbjct: 236 EIGRKRRLTASPSVENLLD--ENVPVAL-----------KQEELETSEPDIETLLTVNFE 282

Query: 301 NESSSDIDNP--NAGSVPAPSGGNFSSVNETIWEDFMADDLIAGDPEE-VVVKDQSEAEV 357
           +ESS +I +P  + G       G FS     +W     +DL+AG PEE  ++ +QS+ +V
Sbjct: 283 DESSIEIADPVSDLGHSVHEESGIFSH----LW----VEDLVAGHPEEPTIIVNQSDIDV 334

Query: 358 ELEDLVATPTDWGEELQDLVDQMGYLR 384
           E+EDL+A P DW E+LQ+LVDQMG+LR
Sbjct: 335 EVEDLIAEPLDWTEDLQELVDQMGFLR 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.825	0.918	0.526	1.6e-96
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.583	0.551	0.572	1.1e-69
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.713	0.585	0.460	6.1e-64
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.838	0.663	0.434	3e-62
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.700	0.559	0.482	4.8e-62
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.554	0.430	0.558	5.5e-61
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.544	0.768	0.528	9.6e-57
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.583	0.794	0.502	1.6e-54
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.617	0.840	0.463	1.7e-52
TAIR|locus:2166562	331	HSFA9 "AT5G54070" [Arabidopsis	0.669	0.776	0.408	4.7e-48

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
 Identities = 182/346 (52%), Positives = 237/346 (68%)

Query:     1 MEGVRVK-EEETVTYXXXXXXXXXXXXXXXXXNFMPQPLEGLHDAGPPPFLTKTYEMVED 59
             ME ++V+ EEETVT+                    P+P+EGL++ GPPPFLTKTYEMVED
Sbjct:     1 MEELKVEMEEETVTFTGSVAASSSVGSSSS-----PRPMEGLNETGPPPFLTKTYEMVED 55

Query:    60 LSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEF 119
              +TD +VSWS  RNSF+VWDSH+FSTTLLP+YFKHSNFSSFIRQLNTYGFRK+DPDRWEF
Sbjct:    56 PATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEF 115

Query:   120 ANEGFLGGQKHLLKTIKRRRHVS-QSMQQRG-GEACLEVGQYGLDGELERLKRDRNVLMA 177
             ANEGFL GQKHLLK IKRRR++  Q++ Q+G G +C+EVGQYG DGE+ERLKRD  VL+A
Sbjct:   116 ANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVA 175

Query:   178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRREL 237
             E+VRLRQ Q  S+ Q++AME RLL TEK+QQQMMTFLAKAL NP+F QQ A  +  ++ L
Sbjct:   176 EVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKSL 235

Query:   238 GGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSS 297
              G+  GRKRRLT+TPS+  ++E +                + DQ E   M+ ++E   ++
Sbjct:   236 FGLDVGRKRRLTSTPSLGTMEENL----------------LHDQ-EFDRMKDDMEMLFAA 278

Query:   298 PVDNESSSDIDNPNAGSVPAPS----GGNFSSVNETIWEDFMADDL 339
              +D+E+++ +       + A +     GN  +  +   ED +   L
Sbjct:   279 AIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAALDVKVEDLVGSPL 324

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 134/234 (57%), Positives = 177/234 (75%)

Query:    35 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
             PQPLEGLH++GPPPFLTKTY++VED  T+ +VSWS++ NSFIVWD   FS TLLP++FKH
Sbjct:    48 PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKH 107

Query:    95 SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQ-RGGE 151
             +NFSSF+RQLNTYGFRKV+PDRWEFANEGFL GQKHLLK I+RR+  + S  MQQ +  E
Sbjct:   108 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSE 167

Query:   152 A------CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205
                    C+EVG+YGLDGE++ L+RD+ VLM E+VRLRQ QQ ++  L+ +E++L  TE 
Sbjct:   168 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 227

Query:   206 KQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQE 259
             KQ+QMM+FLA+A++NP F QQL +    R+E+      +KR+        N+++
Sbjct:   228 KQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEA-ISKKRQRPIDQGKRNVED 280

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 133/289 (46%), Positives = 184/289 (63%)

Query:    47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
             PPFL+KTY+MV+D  TD +VSWS   NSF+VW+  +F+   LPKYFKH+NFSSF+RQLNT
Sbjct:    22 PPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNT 81

Query:   107 YGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVS-QSMQQRGGE-----ACLEVGQYG 160
             YGFRKVDPDRWEFANEGFL GQK +LK+I RR+    Q  QQ   +     AC+EVG++G
Sbjct:    82 YGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFG 141

Query:   161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKN 220
             L+ E+ERL+RD+NVLM E+VRLRQ QQ +   L  +  ++   E++QQQMM+FLAKA+++
Sbjct:   142 LEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQS 201

Query:   221 PSFFQQLAQ-SNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQ 279
             P F  Q +Q SN   + +   ++ +KRRL     M +    ++    GL    +V Y   
Sbjct:   202 PGFLNQFSQQSNEANQHIS--ESNKKRRLPVEDQMNSGSHGVN----GLS-RQIVRYQSS 254

Query:   280 DQNELTSMETEIETFLSSPVDNESSSDIDNPNAGSVPAPS-GGNFSSVN 327
               +   +M  +I+   ++P     SS+  +   G VP  +   N SS N
Sbjct:   255 MNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGDVPNSNISDNGSSSN 303

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 153/352 (43%), Positives = 204/352 (57%)

Query:    35 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
             PQP   L    PPPFL+KTY+MV+D +TD+IVSWS   NSFIVW   +F+  LLPK FKH
Sbjct:    24 PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKH 83

Query:    95 SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVS----QSMQQR 148
             +NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLL++I RR+  H      Q  Q  
Sbjct:    84 NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHS 143

Query:   149 GGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203
              G+     AC+EVG++GL+ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  M  RL   
Sbjct:   144 NGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGM 203

Query:   204 EKKQQQMMTFLAKALKNP----SFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQE 259
             E +QQQ+M+FLAKA+++P     F QQ  Q N   R +    T +KRR      + N   
Sbjct:   204 ENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRIS--DTSKKRRFKRDGIVRNND- 260

Query:   260 TISVAPVGLDCGPVVDYTVQDQNELTSMETEI---ETFLSSPVDNESSSDIDNPNAGSVP 316
               S  P   D G +V Y      +  +M  ++   E + +   D     +  +   G+  
Sbjct:   261 --SATP---D-GQIVKYQPPMHEQAKAMFKQLMKMEPYKTGD-DGFLLGNGTSTTEGTEM 313

Query:   317 APSGGNFSSVNETIWEDFMADDLIAGDPEEVVVKDQSEAEVELEDLVATPTD 368
               S    S +  T+ E   A ++ +  P E   ++ S A    E+ + +P D
Sbjct:   314 ETSSNQVSGI--TLKEMPTASEIQSSSPIETTPENVSAASEATENCIPSPDD 363

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 142/294 (48%), Positives = 196/294 (66%)

Query:    47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
             PPFL+KTY+MV+D  T+ +VSWS   NSF+VW + +FS  LLPKYFKH+NFSSF+RQLNT
Sbjct:    26 PPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNT 85

Query:   107 YGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQRGGE-----ACLEVGQY 159
             YGFRKVDPDRWEFANEGFL G+K LLK+I RR+  HV Q+ QQ   +     AC+EVG++
Sbjct:    86 YGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKF 145

Query:   160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219
             G++ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  +  ++   E++QQQMM+FLAKA++
Sbjct:   146 GIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQ 205

Query:   220 NPSFFQQLAQSNAH--RRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYT 277
             +P F  QL Q N +   R++ G  + +KRRL      EN  + ++    GL+   +V Y 
Sbjct:   206 SPGFLNQLVQQNNNDGNRQIPG--SNKKRRLPVD-EQENRGDNVAN---GLN-RQIVRYQ 258

Query:   278 VQDQNELTSMETEIETFLSSPVDNESSSDIDNPNA---GSVPAPSG---GNFSS 325
                 NE  + +  +  FL++       S  +NP++   G VP+ +    GN SS
Sbjct:   259 -PSINE--AAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSS 309

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 129/231 (55%), Positives = 164/231 (70%)

Query:    35 PQPLEGLH-DAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFK 93
             P P   L+ ++ PPPFL+KTY+MVED +TDAIVSWS T NSFIVWD  +FS  LLPKYFK
Sbjct:    38 PHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFK 97

Query:    94 HSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-----------S 142
             H+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLK I RR+ V           S
Sbjct:    98 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQS 157

Query:   143 QSMQQRGGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 197
             Q + Q  G      +C+EVG++GL+ E+E+LKRD+NVLM E+V+LRQ QQ + ++L  + 
Sbjct:   158 QQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLV 217

Query:   198 DRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRL 248
               L   E++QQQ+M+FLAKA++NP+F  Q  Q       +   +  +KRRL
Sbjct:   218 KHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSN-MHVTEANKKRRL 267

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 119/225 (52%), Positives = 158/225 (70%)

Query:    35 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
             PQP+EGLH+  PPPFLTKT+EMV+D +TD IVSW+R   SF+VWD H FST LLP++FKH
Sbjct:    16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKH 75

Query:    95 SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACL 154
             SNFSSFIRQLNTYGFRK++ +RWEFANE FL GQ+ LLK IKRR   + S      +AC 
Sbjct:    76 SNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSP-SHDACN 134

Query:   155 EVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214
             E            L+R++ VLM EIV LRQ QQ ++  + AME R+  TE+KQ+QMM+FL
Sbjct:   135 E------------LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFL 182

Query:   215 AKALKNPSFFQQLAQSNAHR-RELGGVQTGRKRRLTATPSMENLQ 258
             A+A+++PSF  QL +    + +EL   ++ +++R   + SM  L+
Sbjct:   183 ARAMQSPSFLHQLLKQRDKKIKELEDNESAKRKR--GSSSMSELE 225

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 116/231 (50%), Positives = 155/231 (67%)

Query:    35 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKH 94
             P P+EGL +AGP PFLTKT+EMV D +T+ IVSW+R   SF+VWD H FS T+LP YFKH
Sbjct:    15 PVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKH 74

Query:    95 SNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACL 154
             +NFSSF+RQLNTYGFRK++ +RWEF NEGFL GQ+ LLK+IKRR   S        ++  
Sbjct:    75 NNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQP 134

Query:   155 EVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214
             E    G+  EL +L+ +R+VLM EI  LRQ +Q++R  + AME R+   EKKQ+ MM+FL
Sbjct:   135 EAHDPGV--ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFL 192

Query:   215 AKALKNPSFFQQLAQSNAHRRELGGV-QTGRKRRLTATPSMENLQETISVA 264
              +A++NPS  QQ+ +    R E   + Q G    L     +E+L E  ++A
Sbjct:   193 RRAVENPSLLQQIFEQKRDREEAAMIDQAG----LIKMEEVEHLSELEALA 239

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 121/261 (46%), Positives = 160/261 (61%)

Query:    34 MPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFK 93
             +P PLEGL +  P  FLTKTY +VED ST+ IVSWSR  NSFIVW+   F+   LP+ FK
Sbjct:     5 LPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFK 64

Query:    94 HSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEAC 153
             H+NFSSF+RQLNTYGF+K+D +RWEFANE FL G++HLLK IKRR+  SQ+  Q      
Sbjct:    65 HNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQ------ 118

Query:   154 LEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTF 213
                    L+GE+  L+RDR  L  E+VRLR+ Q+  +  L  ME++L  TE KQ+ MM F
Sbjct:   119 ------SLEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNF 172

Query:   214 LAKALKNPSFFQQLAQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAP--VGLD-- 269
             L K +K PSF Q L + N      G     +K+ + ++  +E+  + +   P   G D  
Sbjct:   173 LLKKIKKPSFLQSLRKRNLQ----GIKNREQKQEVISSHGVEDNGKFVKAEPEEYGDDID 228

Query:   270 --CGPVVDYTVQDQNELTSME 288
               CG V DY   D+  + SME
Sbjct:   229 DQCGGVFDYG--DELHIASME 247

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2166562 HSFA9 "AT5G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 112/274 (40%), Positives = 165/274 (60%)

Query:    41 LHDAGP-PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSS 99
             LH+ G   PFL KT+E+V+D  TD +VSWS TR SFI+WDS++FS  LLPKYFKH NFSS
Sbjct:    63 LHEIGLITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSS 122

Query:   100 FIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQY 159
             FIRQLN+YGF+KVD DRWEFANEGF GG+KHLLK IKRR   ++   +       E    
Sbjct:   123 FIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTET--- 179

Query:   160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219
                 E+E LK +++ +  E+++L+Q Q++S+ Q+  +++++   + +QQ M++F AK  K
Sbjct:   180 ----EVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAK 235

Query:   220 NPSFFQQLAQSNAHR--RELGGVQTGRKRRLTATP-SMENLQ--ETISVAPVGLDCGPVV 274
             +  F ++L +    +  REL   +  +K +L     + +NL   E   +A    +  P  
Sbjct:   236 DQRFVERLVKKRKMKIQRELEAAEFVKKLKLLQDQETQKNLLDVEREFMAMAATEHNPEP 295

Query:   275 DYTVQDQNELTSMETEIETFLSSPVDNESSSDID 308
             D  V +Q+  T  +   E  L   VD   S D++
Sbjct:   296 DILVNNQSGNTRCQLNSEDLL---VDG-GSMDVN 325

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P41152	HSF30_SOLPE	No assigned EC number	0.5959	0.8593	0.9401	N/A	no
O80982	HSFA2_ARATH	No assigned EC number	0.5295	0.7942	0.8840	yes	no
Q6VBB2	HFA2B_ORYSJ	No assigned EC number	0.4519	0.8723	0.9005	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	4e-54
smart00415	105	smart00415, HSF, heat shock factor	7e-53
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	7e-28

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  173 bits (441), Expect = 4e-54
 Identities = 58/94 (61%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

Query: 48  PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTY 107
           PFL K YE++ED S D I+SWS   NSFI+WD  +F+  +LPKYFKH+NFSSF+RQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 108 GFRKVDPDR--WEFANEGFLGGQKHLLKTIKRRR 139
           GF KV  DR  WEFA+  F  GQK LL  IKRR+
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRK 94

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  170 bits (433), Expect = 7e-53
 Identities = 61/105 (58%), Positives = 75/105 (71%), Gaps = 11/105 (10%)

Query: 45  GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQL 104
            PPPFLTK Y +VED STD I+SWS +  SF++WD  +F+  LLP+YFKH+NFSSF+RQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 105 NTYGFRKVDP-----------DRWEFANEGFLGGQKHLLKTIKRR 138
           N YGFRKVDP           D+WEFAN  F+ GQ  LL+ IKR+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  110 bits (277), Expect = 7e-28
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 35/229 (15%)

Query: 27  SSSSSNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTT 86
            S SS +            P  F+ K Y+++E+     ++ WS    SF++ D  +F+  
Sbjct: 1   MSMSSRWSQ----------PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKV 50

Query: 87  LLPKYFKHSNFSSFIRQLNTYGFRKV----------DPDRWEFANEGFLGGQKHLLKTIK 136
           +LP+YFKH NF+SF+RQLN YGF KV          + + WEF N+ F  G   LLK IK
Sbjct: 51  ILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIK 110

Query: 137 RRR---------HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVL---MAEIVRLRQ 184
           R++         + S+          + + Q  L   L  L      L   + E+     
Sbjct: 111 RKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNY 170

Query: 185 HQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAH 233
              ++ D ++AM   L              +   +    ++++A+  + 
Sbjct: 171 RNLRTIDDINAM---LADLSMSPFADEHLKSFLQELFGAYKEVAEPQSP 216

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.98
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	95.87
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	94.57
smart00413	87	ETS erythroblast transformation specific domain. v	93.91
KOG3806	177	consensus Predicted transcription factor [Transcri	89.42
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.38
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.97
PRK15422	79	septal ring assembly protein ZapB; Provisional	81.34
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	80.53

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=1.6e-44  Score=353.77  Aligned_cols=187  Identities=47%  Similarity=0.833  Sum_probs=171.2

Q ss_pred             CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC--CCCccccCC
Q 016701           45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD--PDRWEFANE  122 (384)
Q Consensus        45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~~eF~h~  122 (384)
                      ++++|+.|||.||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+|||||+.  +++|+|+|+
T Consensus        11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~   90 (304)
T KOG0627|consen   11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP   90 (304)
T ss_pred             CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence            689999999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             CcCcCcccchhhhcccccCCcccc---c-cC------CccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016701          123 GFLGGQKHLLKTIKRRRHVSQSMQ---Q-RG------GEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ  192 (384)
Q Consensus       123 ~F~Rg~~~LL~~IkRk~~~s~~~~---~-~~------~~~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~q  192 (384)
                      +|+||+++||++|+||++......   . ..      ...++......+..++.+|+++++.|+.|+.+||+++..++.+
T Consensus        91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~  170 (304)
T KOG0627|consen   91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT  170 (304)
T ss_pred             hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999998854421   1 10      1122334556889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHhhH
Q 016701          193 LSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN  231 (384)
Q Consensus       193 l~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~~~  231 (384)
                      ++.+.+++...+.+|.+|+.|++++++.|.|+.++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            999999999999999999999999999999999998754

>smart00415 HSF heat shock factor

Probab=100.00  E-value=1.2e-34  Score=243.86  Aligned_cols=94  Identities=65%  Similarity=1.213  Sum_probs=90.7

Q ss_pred             CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccCC----------
Q 016701           45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDP----------  114 (384)
Q Consensus        45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~----------  114 (384)
                      .+|+|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3699999999999999999999999999999999999999999999999999999999999999999865          


Q ss_pred             -CCccccCCCcCcCcccchhhhccc
Q 016701          115 -DRWEFANEGFLGGQKHLLKTIKRR  138 (384)
Q Consensus       115 -~~~eF~h~~F~Rg~~~LL~~IkRk  138 (384)
                       +.|+|+||+|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999996

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=8.9e-35  Score=243.31  Aligned_cols=93  Identities=55%  Similarity=0.975  Sum_probs=81.5

Q ss_pred             chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccCCC---------Ccc
Q 016701           48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPD---------RWE  118 (384)
Q Consensus        48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~---------~~e  118 (384)
                      +||.|||+||+||+++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999643         399


Q ss_pred             ccCCCcCcCcccchhhhccccc
Q 016701          119 FANEGFLGGQKHLLKTIKRRRH  140 (384)
Q Consensus       119 F~h~~F~Rg~~~LL~~IkRk~~  140 (384)
                      |+||+|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.98  E-value=2.5e-33  Score=271.49  Aligned_cols=140  Identities=36%  Similarity=0.684  Sum_probs=112.7

Q ss_pred             CCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC-C---------
Q 016701           45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD-P---------  114 (384)
Q Consensus        45 ~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-~---------  114 (384)
                      .++.|+.|||.||++|++.++|+|+|+|+||||+|++.|.+.|||+||||+||+|||||||+|||+||. .         
T Consensus         9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~   88 (282)
T COG5169           9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE   88 (282)
T ss_pred             chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence            357899999999999999999999999999999999999999999999999999999999999999996 1         


Q ss_pred             CCccccCCCcCcCcccchhhhcccccCCccccccC-Cccc---ccccc-----CCchHHHHHHHHHHHHHHHHHHHHHH
Q 016701          115 DRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRG-GEAC---LEVGQ-----YGLDGELERLKRDRNVLMAEIVRLRQ  184 (384)
Q Consensus       115 ~~~eF~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~-~~~~---~e~~~-----~~l~~eie~LKrd~~~L~~El~~LrQ  184 (384)
                      ..|+|.|++|++|..++|++|+|++.++....-.. ...+   .++..     ..+..++.+|....+.++..+..|+.
T Consensus        89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~  167 (282)
T COG5169          89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKE  167 (282)
T ss_pred             hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccc
Confidence            25999999999999999999999887765421111 1111   12222     24556666777777777666666654

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=95.87  E-value=0.0048  Score=50.57  Aligned_cols=57  Identities=23%  Similarity=0.334  Sum_probs=44.9

Q ss_pred             HHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhc-cCCcCCCChhhHHhhhcccc
Q 016701           52 KTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLL-PKYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        52 KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vL-p~~Fkh~nfsSFvRQLN~YG  108 (384)
                      =|.++|.|+++.++|+|.. .+.-|.|.||+++++.=- -+.-...+|.++-|-|..|.
T Consensus         7 FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    7 FLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             HHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             HHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence            3678899999999999999 999999999999986311 12234568899999998774

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=94.57  E-value=0.086  Score=45.89  Aligned_cols=73  Identities=21%  Similarity=0.338  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHhhHHhhhccc-CcccCccccC
Q 016701          173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELG-GVQTGRKRRL  248 (384)
Q Consensus       173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~~~~~~k~~~-~~~~~rkR~L  248 (384)
                      +.++.||..|++.+..+...+.+|.+++...++.+++|..+-|+++++   |...+.+-+-++++- ++..++++++
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~i   75 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQI   75 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT-------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCc
Confidence            457889999999999999999999999999999999999999999997   777777665455554 4444444444

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>smart00413 ETS erythroblast transformation specific domain

Probab=93.91  E-value=0.081  Score=43.62  Aligned_cols=56  Identities=18%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             HHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhc-cCCcCCCChhhHHhhhcccc
Q 016701           53 TYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLL-PKYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        53 L~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vL-p~~Fkh~nfsSFvRQLN~YG  108 (384)
                      |.++|.||++.++|+|.. ++.-|.+.|+++.++.-= -+-=...||..+-|-|..|-
T Consensus         8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            678999999999999998 688999999988776311 12223567888888887774

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=89.42  E-value=0.41  Score=44.33  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccc
Q 016701           50 LTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY  107 (384)
Q Consensus        50 l~KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y  107 (384)
                      ..=|-++|+|++..++|+|.. +|--|.+.||++-++.-=- +-=...||.-.-|-|..|
T Consensus        72 wqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   72 WQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             HHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            334556789999999999998 6879999999999874211 211245666666666655

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.38  E-value=4.8  Score=32.02  Aligned_cols=46  Identities=33%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016701          161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK  206 (384)
Q Consensus       161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k  206 (384)
                      |..+++.||..+..|..+...|+++.+..+.+-.+..+|++++-.+
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566666666666666666666666666555555555555554433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.97  E-value=9.4  Score=30.45  Aligned_cols=42  Identities=19%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016701          161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS  202 (384)
Q Consensus       161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~  202 (384)
                      +.-||+.||..++.|..|+..+++.......+...+.+...+
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~   64 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG   64 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888888888888887777666655555554444443

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=81.34  E-value=6.5  Score=31.92  Aligned_cols=42  Identities=29%  Similarity=0.455  Sum_probs=27.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 016701          161 LDGELERLKRDRNVLMAEIVR-------LRQHQQQSRDQLSAMEDRLLS  202 (384)
Q Consensus       161 l~~eie~LKrd~~~L~~El~~-------LrQqqq~~~~ql~~meeRl~~  202 (384)
                      |.-||+.||.++..|..|+..       |+++.+.++.+..+-++|+++
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888888888777       444444444444444444443

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=80.53  E-value=7.2  Score=28.28  Aligned_cols=41  Identities=22%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016701          161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL  201 (384)
Q Consensus       161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~  201 (384)
                      ++.+.+.||+....|..+-..|.++.+....++..+...++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45667778888888888888888887777777777766553

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		3e-22
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		1e-15
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		6e-15
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		1e-14
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		8e-14
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		8e-14
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		9e-14

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 14/109 (12%)
Query: 44  AGP---PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSF 100
           AGP   P FLTK + +V D  TDA++ WS + NSF V+D  QF+  +LPKYFKH+N +SF
Sbjct: 12  AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 101 IRQLNTYGFRK---------VDPDR--WEFANEGFLGGQKHLLKTIKRR 138
           +RQLN YGFRK         V P+R   EF +  FL GQ+ LL+ IKR+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 44  AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQ 103
           +G P FL K + +V+D  T+ ++ W++   SF++ +  QF+  LLP  +KH+N +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 104 LNTYGFRKV----------DPDRWEFANEGFLGGQKHLLKTIKRR 138
           LN YGF K+          D D  EF++  F      LL  IKR+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 47  PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
           P F+ K + MV D S +  + WS +  S +V +  +F   +LPKYFKHSNF+SF+RQLN 
Sbjct: 13  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 107 YGFRKV-----------DPDRWEFANE 122
           YG+ KV           +  RWEF NE
Sbjct: 73  YGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 47  PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
           P F+ K + MV D S +  + WS +  S +V +  +F   +LPKYFKHSNF+SF+RQLN 
Sbjct: 3   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 107 YGFRKV-----------DPDRWEFANE 122
           YG+ KV           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 47  PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
           P F+ K + MV D S +  + WS +  S +V +  +F   +LPKYFKHSNF+SF+RQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 107 YGFRKV-----------DPDRWEFANE 122
           YG+ KV           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 47  PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
           P F+ K +  V D S +  + WS +  S +V +  +F   +LPKYFKHSNF+SF+RQLN 
Sbjct: 3   PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 107 YGFRKV-----------DPDRWEFANE 122
           YG+ KV           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 47  PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
           P F+ K + MV D S +  + WS +  S +V +  +F   +L KYFKHSNF+SF+RQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 107 YGFRKV-----------DPDRWEFANE 122
           YG+ KV           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 47  PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNT 106
           P F+ K + MV D S +  + WS +  S +V +  +F   +L KYFKHSNF+SF+RQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 107 YGFRKV-----------DPDRWEFANE 122
           YG+ KV           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
1hks_A	106	Heat-shock transcription factor; transcription reg	1e-54
2ldu_A	125	Heat shock factor protein 1; structural genomics,	3e-52
3hts_B	102	Heat shock transcription factor; transcription reg	1e-45

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  174 bits (444), Expect = 1e-54
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 10/105 (9%)

Query: 44  AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQ 103
           +G P FL K + +V+D  T+ ++ W++   SF++ +  QF+  LLP  +KH+N +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 104 LNTYGFRKV----------DPDRWEFANEGFLGGQKHLLKTIKRR 138
           LN YGF K+          D D  EF++  F      LL  IKR+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  169 bits (429), Expect = 3e-52
 Identities = 55/111 (49%), Positives = 71/111 (63%), Gaps = 14/111 (12%)

Query: 42  HDAGP---PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFS 98
           H AGP   P FLTK + +V D  TDA++ WS + NSF V+D  QF+  +LPKYFKH+N +
Sbjct: 10  HMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMA 69

Query: 99  SFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRR 138
           SF+RQLN YGFRKV           + D  EF +  FL GQ+ LL+ IKR+
Sbjct: 70  SFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  151 bits (383), Expect = 1e-45
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 11/91 (12%)

Query: 45  GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQL 104
             P F+ K + MV D S +  + WS +  S +V +  +F   +LPKYFKHSNF+SF+RQL
Sbjct: 11  ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 70

Query: 105 NTYGFRKV-----------DPDRWEFANEGF 124
           N YG+ KV           +  RWEF NE  
Sbjct: 71  NMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	89.69
1awc_A	110	Protein (GA binding protein alpha); complex (trans	89.49
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	89.21
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	88.66
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	88.24
4avp_A	106	ETS translocation variant 1; transcription, transc	87.97
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	84.49
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	83.35
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.53
2dao_A	118	Transcription factor ETV6; ETS domain, structural	81.82
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	81.32

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=7.6e-40  Score=275.09  Aligned_cols=95  Identities=41%  Similarity=0.787  Sum_probs=91.4

Q ss_pred             CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016701           44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD----------  113 (384)
Q Consensus        44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------  113 (384)
                      +++|+||.|||.||+||+++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4679999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCccccCCCcCcCcccchhhhccc
Q 016701          114 PDRWEFANEGFLGGQKHLLKTIKRR  138 (384)
Q Consensus       114 ~~~~eF~h~~F~Rg~~~LL~~IkRk  138 (384)
                      ++.|+|+||+|+||+|+||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=4.8e-39  Score=277.66  Aligned_cols=98  Identities=52%  Similarity=0.872  Sum_probs=93.6

Q ss_pred             CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016701           44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD----------  113 (384)
Q Consensus        44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------  113 (384)
                      .++|+||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.          
T Consensus        15 ~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~   94 (125)
T 2ldu_A           15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKP   94 (125)
T ss_dssp             CCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSC
T ss_pred             CCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccC
Confidence            4579999999999999999999999999999999999999999999999999999999999999999983          


Q ss_pred             -CCCccccCCCcCcCcccchhhhcccccC
Q 016701          114 -PDRWEFANEGFLGGQKHLLKTIKRRRHV  141 (384)
Q Consensus       114 -~~~~eF~h~~F~Rg~~~LL~~IkRk~~~  141 (384)
                       ++.|+|+||+|+||+++||.+|+||++.
T Consensus        95 ~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           95 ERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             SSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             CCCccEEECccccCCCHHHHhhCcCCCCC
Confidence             4689999999999999999999999875

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=4.6e-33  Score=232.19  Aligned_cols=80  Identities=48%  Similarity=0.907  Sum_probs=76.7

Q ss_pred             CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016701           44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD----------  113 (384)
Q Consensus        44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------  113 (384)
                      ..+|+||.|||.||+||+++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.          
T Consensus        10 ~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~   89 (102)
T 3hts_B           10 MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSN   89 (102)
T ss_dssp             CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------C
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCC
Confidence            4569999999999999999999999999999999999999999999999999999999999999999996          


Q ss_pred             -CCCccccCCC
Q 016701          114 -PDRWEFANEG  123 (384)
Q Consensus       114 -~~~~eF~h~~  123 (384)
                       +++|||+|++
T Consensus        90 ~~~~wEF~n~~  100 (102)
T 3hts_B           90 NDSRWEFENER  100 (102)
T ss_dssp             CSCCEEEEECC
T ss_pred             CcCCeEecCCC
Confidence             6899999986

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=89.69  E-value=0.11  Score=42.96  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccccc----cccCCCCcccc
Q 016701           48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA  120 (384)
Q Consensus        48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~  120 (384)
                      ....=|.++|+|+++.++|+|...+.-|.+.||++.++.-=. +-=...||..+.|-|..|-=    +||...+..|.
T Consensus         9 ~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk   86 (102)
T 2ypr_A            9 QLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR   86 (102)
T ss_dssp             CHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred             eHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            344446788999999999999988899999999888863211 11146788889888887743    24454455443

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=89.49  E-value=0.14  Score=42.83  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=42.9

Q ss_pred             HHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016701           53 TYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        53 L~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG  108 (384)
                      |.++|.||++.++|+|...+.-|.+.||++.++.-=. +-=...||...-|-|..|.
T Consensus         7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   63 (110)
T 1awc_A            7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence            5788999999999999998889999999888763221 1113467888888887774

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=89.21  E-value=0.14  Score=41.91  Aligned_cols=61  Identities=18%  Similarity=0.292  Sum_probs=45.7

Q ss_pred             chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016701           48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG  108 (384)
                      ....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-
T Consensus         7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            344446778899999999999998889999999888763211 1214678888888888774

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=88.66  E-value=0.11  Score=42.10  Aligned_cols=74  Identities=12%  Similarity=0.285  Sum_probs=52.9

Q ss_pred             CchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----ccCCCCcccc
Q 016701           47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRWEFA  120 (384)
Q Consensus        47 ~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~  120 (384)
                      .....=|.++|.||+..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+    |+...+..|.
T Consensus         5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            3344457889999999999999988889999999888864221 122467899999999887522    4444455554

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=88.24  E-value=0.11  Score=45.31  Aligned_cols=83  Identities=22%  Similarity=0.339  Sum_probs=59.1

Q ss_pred             cccCCCCCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----cc
Q 016701           38 LEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KV  112 (384)
Q Consensus        38 ~e~~~~~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv  112 (384)
                      +.|....++.....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+    |+
T Consensus        31 ~~~~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv  110 (146)
T 1gvj_A           31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT  110 (146)
T ss_dssp             HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred             ccCCCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEec
Confidence            3333345566677778899999999999999999889999999988863211 122356888888888887543    44


Q ss_pred             CCCCcccc
Q 016701          113 DPDRWEFA  120 (384)
Q Consensus       113 ~~~~~eF~  120 (384)
                      ...+..|.
T Consensus       111 ~GkrlvY~  118 (146)
T 1gvj_A          111 AGKRYVYR  118 (146)
T ss_dssp             TTSSSEEE
T ss_pred             CCCeEEEE
Confidence            54455554

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=87.97  E-value=0.21  Score=41.50  Aligned_cols=74  Identities=16%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             CchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccccc----cccCCCCcccc
Q 016701           47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA  120 (384)
Q Consensus        47 ~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~  120 (384)
                      -....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=...||..+.|-|..|-=    +||...+..|.
T Consensus        12 i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk   90 (106)
T 4avp_A           12 LQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK   90 (106)
T ss_dssp             CCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred             EeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence            3444557788999999999999998889999999888863211 22246789999999888742    35555555553

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=84.49  E-value=0.42  Score=42.74  Aligned_cols=78  Identities=21%  Similarity=0.325  Sum_probs=55.5

Q ss_pred             CCCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----ccCCCCc
Q 016701           43 DAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRW  117 (384)
Q Consensus        43 ~~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~  117 (384)
                      ..++.....=|.++|.|+...++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+    |+...+.
T Consensus        61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  140 (171)
T 2nny_A           61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  140 (171)
T ss_dssp             TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence            34556666667889999999999999999899999999888863211 112356788888888887544    4444444


Q ss_pred             ccc
Q 016701          118 EFA  120 (384)
Q Consensus       118 eF~  120 (384)
                      .|.
T Consensus       141 vY~  143 (171)
T 2nny_A          141 VYR  143 (171)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=83.35  E-value=0.69  Score=38.13  Aligned_cols=69  Identities=13%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             HHHHHHhcCCC-CCCeEEEcCC-CCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccccc----cccCCCCccc
Q 016701           51 TKTYEMVEDLS-TDAIVSWSRT-RNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEF  119 (384)
Q Consensus        51 ~KL~~ml~d~~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF  119 (384)
                      .=|.++|.||+ ..++|+|... ..-|.+.||++.++.-=. +-=...||..+.|-|..|-=    +|+...+..|
T Consensus         9 qFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY   84 (103)
T 3jtg_A            9 EFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVY   84 (103)
T ss_dssp             HHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEE
T ss_pred             HHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEE
Confidence            34667889998 5689999984 458999999888863111 11146789999999988732    2444444444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.53  E-value=8.4  Score=30.35  Aligned_cols=51  Identities=18%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016701          161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM  211 (384)
Q Consensus       161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~  211 (384)
                      +.-+++.||.++..|..|...++........+...+.+.+..-..+...|+
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888887777555444444444444444444443333333

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.82  E-value=0.49  Score=39.95  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCchHHHHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc---c-cccCCCCccc
Q 016701           46 PPPFLTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG---F-RKVDPDRWEF  119 (384)
Q Consensus        46 ~~~Fl~KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG---F-~Kv~~~~~eF  119 (384)
                      ....-.=|.++|.||++.++|+|.. ++.-|.+.||++.++.-=. +-=...||...-|-|..|-   + +|+...+..|
T Consensus         8 ~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY   87 (118)
T 2dao_A            8 CRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLF   87 (118)
T ss_dssp             CCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEE
T ss_pred             chHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEE
Confidence            3444555788899999999999987 4568999999888764222 2224578999999998883   2 3455555555


Q ss_pred             c
Q 016701          120 A  120 (384)
Q Consensus       120 ~  120 (384)
                      .
T Consensus        88 ~   88 (118)
T 2dao_A           88 R   88 (118)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=81.32  E-value=0.31  Score=42.93  Aligned_cols=74  Identities=12%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----ccCCCCccccC
Q 016701           48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRWEFAN  121 (384)
Q Consensus        48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~h  121 (384)
                      ....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+    |+...+..|..
T Consensus         7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF   85 (157)
T 1hbx_G            7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   85 (157)
T ss_dssp             CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence            344446788999999999999988889999999888864222 222467889999999887532    44445555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	2e-42
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	2e-38

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  141 bits (357), Expect = 2e-42
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 10/105 (9%)

Query: 44  AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQ 103
           +G P FL K + +V+D  T+ ++ W++   SF++ +  QF+  LLP  +KH+N +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 104 LNTYGFRKV----------DPDRWEFANEGFLGGQKHLLKTIKRR 138
           LN YGF K+          D D  EF++  F      LL  IKR+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  131 bits (330), Expect = 2e-38
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 11/89 (12%)

Query: 45  GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQL 104
             P F+ K + MV D S +  + WS +  S +V +  +F   +LPKYFKHSNF+SF+RQL
Sbjct: 1   ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 60

Query: 105 NTYGFRKV-----------DPDRWEFANE 122
           N YG+ KV           +  RWEF NE
Sbjct: 61  NMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	94.53
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	91.74
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	91.37
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	90.3
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	89.15
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	85.54
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	84.03

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.5e-36  Score=252.95  Aligned_cols=95  Identities=41%  Similarity=0.787  Sum_probs=90.3

Q ss_pred             CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016701           44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD----------  113 (384)
Q Consensus        44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------  113 (384)
                      +++|+||.|||+||+||++++||+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            4679999999999999999999999999999999999999999999999999999999999999999973          


Q ss_pred             CCCccccCCCcCcCcccchhhhccc
Q 016701          114 PDRWEFANEGFLGGQKHLLKTIKRR  138 (384)
Q Consensus       114 ~~~~eF~h~~F~Rg~~~LL~~IkRk  138 (384)
                      ++.++|+||+|+||+|+||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            3568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=9.4e-31  Score=212.72  Aligned_cols=78  Identities=49%  Similarity=0.931  Sum_probs=73.7

Q ss_pred             CCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC-----------C
Q 016701           46 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD-----------P  114 (384)
Q Consensus        46 ~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-----------~  114 (384)
                      .|+||.|||+||+||++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999984           3


Q ss_pred             CCccccCCC
Q 016701          115 DRWEFANEG  123 (384)
Q Consensus       115 ~~~eF~h~~  123 (384)
                      +.|+|+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            579999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=94.53  E-value=0.0045  Score=50.19  Aligned_cols=74  Identities=14%  Similarity=0.295  Sum_probs=53.5

Q ss_pred             CchHHHHHHHhc----CCCCCCe--EEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccCCC---Cc
Q 016701           47 PPFLTKTYEMVE----DLSTDAI--VSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPD---RW  117 (384)
Q Consensus        47 ~~Fl~KL~~ml~----d~~~~~i--IsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~---~~  117 (384)
                      ..|+.|||.+|.    +|++...  |.|.+++. |.| +...|+..+      -.+-.|.-.-|..|||..+.++   .|
T Consensus        28 ~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lL------giK~ntlN~Nfr~~gF~q~~~d~~~~~   99 (114)
T d1pp7u_          28 SRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVM------GIKLNTLNVNLRDLAFEQLQHDKGGWT   99 (114)
T ss_dssp             GSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHH------TCCHHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHH------CCChhhhcCcccccCceeeecCCCcce
Confidence            579999999996    4443222  79999996 655 888999754      2234666777888999988543   35


Q ss_pred             cccCCCcCcCc
Q 016701          118 EFANEGFLGGQ  128 (384)
Q Consensus       118 eF~h~~F~Rg~  128 (384)
                      .+.++.|.|..
T Consensus       100 ~w~~~~F~~nS  110 (114)
T d1pp7u_         100 QWKRSGFTRNS  110 (114)
T ss_dssp             EEECTTEETTE
T ss_pred             eeccCCccccc
Confidence            57889997754

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.74  E-value=0.031  Score=44.77  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=43.0

Q ss_pred             HHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016701           53 TYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        53 L~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG  108 (384)
                      |.++|.||++.++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|.
T Consensus         7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            5778999999999999998889999999888763111 1223567888888887773

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.034  Score=43.66  Aligned_cols=59  Identities=19%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016701           50 LTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        50 l~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG  108 (384)
                      ..=|.++|.|+++.++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-
T Consensus         9 w~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           9 WQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             HHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            3446778999999999999887778999999888763211 1112468888888887764

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.035  Score=42.62  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=42.0

Q ss_pred             HHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhc-cCCcCCCChhhHHhhhcccc
Q 016701           53 TYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLL-PKYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        53 L~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vL-p~~Fkh~nfsSFvRQLN~YG  108 (384)
                      |.++|.|+++.++|+|.. ++.-|.+.|+++.++.== -+.=...||...-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY   64 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY   64 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            456788999999999998 688999999988886321 12222468888888887763

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.15  E-value=0.029  Score=46.76  Aligned_cols=71  Identities=23%  Similarity=0.343  Sum_probs=50.0

Q ss_pred             cccCCCCCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016701           38 LEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG  108 (384)
Q Consensus        38 ~e~~~~~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG  108 (384)
                      ..|....+...--.=|.++|.|+++.++|+|...+-.|.+.|+++.++.-=. +-=...||...-|-|..|-
T Consensus        31 ~~~~~~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY  102 (142)
T d1gvja_          31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY  102 (142)
T ss_dssp             HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHh
Confidence            3333334445455557789999999999999998888999999998863211 1122467888888887764

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.09  Score=44.35  Aligned_cols=68  Identities=13%  Similarity=0.337  Sum_probs=50.4

Q ss_pred             HHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc----ccccCCCCcccc
Q 016701           53 TYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG----FRKVDPDRWEFA  120 (384)
Q Consensus        53 L~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG----F~Kv~~~~~eF~  120 (384)
                      |.++|.||++.++|+|...+.-|.+.|+++.++.-=. +.=...||...-|-|..|-    .+||...+..|.
T Consensus        10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_          10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            4567899999999999998889999999998874211 2224578899999988874    334555666664

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.03  E-value=0.11  Score=39.98  Aligned_cols=54  Identities=13%  Similarity=0.269  Sum_probs=37.3

Q ss_pred             HHHHhcCCCCCCeEEEcCCCC-eEEEe--CCchhhhhhcc--C-CcCCCChhhHHhhhccc
Q 016701           53 TYEMVEDLSTDAIVSWSRTRN-SFIVW--DSHQFSTTLLP--K-YFKHSNFSSFIRQLNTY  107 (384)
Q Consensus        53 L~~ml~d~~~~~iIsWs~~G~-sFiI~--d~~~F~~~vLp--~-~Fkh~nfsSFvRQLN~Y  107 (384)
                      |.++|.||++.++|+|...+. .|-+.  ++++.++. -.  + .=...||...-|-|..|
T Consensus         8 L~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~l-WG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHR-WGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHH-HHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHH-HHhhcCCCCCCcHHHHHHHHHHH
Confidence            567889999999999987664 46555  45556642 11  1 12356888998888877