Query 016702
Match_columns 384
No_of_seqs 299 out of 1298
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 18:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 9.1E-91 3.1E-95 672.9 31.7 267 97-381 6-281 (283)
2 3mwb_A Prephenate dehydratase; 100.0 8.7E-90 3E-94 673.8 29.8 273 96-382 5-284 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 4E-89 1.4E-93 656.2 27.9 261 96-379 2-267 (267)
4 3luy_A Probable chorismate mut 100.0 1.2E-86 4.1E-91 655.5 25.3 270 95-383 4-291 (329)
5 1phz_A Protein (phenylalanine 99.8 1.3E-20 4.6E-25 189.8 9.4 81 282-377 30-111 (429)
6 2d8d_A Aroag, phospho-2-dehydr 98.6 3.6E-09 1.2E-13 85.1 -0.3 61 37-97 14-87 (90)
7 3nvt_A 3-deoxy-D-arabino-heptu 98.3 2.4E-07 8E-12 93.0 3.3 60 14-87 30-94 (385)
8 1ecm_A Endo-oxabicyclic transi 98.2 9.6E-08 3.3E-12 79.4 -0.9 51 37-87 16-72 (109)
9 3ret_A Salicylate biosynthesis 98.2 3.1E-07 1.1E-11 75.4 1.2 50 37-87 19-74 (101)
10 2vkl_A RV0948C/MT0975; helical 98.1 4.5E-07 1.6E-11 73.1 0.7 43 37-79 23-70 (90)
11 3rmi_A Chorismate mutase prote 98.1 3.3E-07 1.1E-11 77.0 -0.2 51 37-87 23-79 (114)
12 1ybz_A Chorismate mutase; cons 98.0 8.9E-07 3E-11 71.5 0.9 41 37-77 28-73 (91)
13 2gtv_X CM, chorismate mutase; 97.9 4.1E-07 1.4E-11 75.2 -2.8 51 37-87 14-78 (104)
14 2gbb_A Putative chorismate mut 97.6 5.3E-06 1.8E-10 73.3 -1.4 48 40-87 4-57 (156)
15 2fp1_A Chorismate mutase; alph 97.5 1.7E-05 5.9E-10 70.7 0.2 49 39-87 6-60 (166)
16 2ko1_A CTR148A, GTP pyrophosph 96.9 0.0048 1.6E-07 47.4 9.1 68 285-370 4-71 (88)
17 1zpv_A ACT domain protein; str 96.6 0.015 5.3E-07 45.1 9.7 38 286-323 5-42 (91)
18 2f1f_A Acetolactate synthase i 96.3 0.023 7.7E-07 50.3 10.2 71 286-373 3-73 (164)
19 2pc6_A Probable acetolactate s 96.1 0.03 1E-06 49.6 9.8 71 286-373 4-74 (165)
20 2fgc_A Acetolactate synthase, 96.0 0.041 1.4E-06 50.0 10.1 72 286-374 29-100 (193)
21 1wdn_A GLNBP, glutamine bindin 93.3 0.65 2.2E-05 39.8 10.7 98 97-212 109-206 (226)
22 2jhe_A Transcription regulator 93.3 0.44 1.5E-05 40.5 9.5 62 289-371 3-64 (190)
23 1y7p_A Hypothetical protein AF 92.9 0.17 6E-06 46.7 6.4 65 286-368 4-70 (223)
24 2f06_A Conserved hypothetical 92.2 0.54 1.8E-05 39.5 8.3 36 286-321 71-107 (144)
25 2f06_A Conserved hypothetical 91.7 0.67 2.3E-05 38.9 8.4 35 287-321 7-41 (144)
26 3h7m_A Sensor protein; histidi 91.1 1 3.6E-05 38.8 9.3 98 97-212 117-214 (234)
27 1u8s_A Glycine cleavage system 91.0 2.4 8.1E-05 37.3 11.6 36 286-321 93-128 (192)
28 3mpk_A Virulence sensor protei 91.0 0.58 2E-05 42.3 7.8 99 97-213 139-238 (267)
29 1xt8_A Putative amino-acid tra 90.6 1.2 4.2E-05 40.5 9.7 95 97-212 153-249 (292)
30 4f3p_A Glutamine-binding perip 90.6 1.4 4.9E-05 38.8 9.9 84 97-187 130-213 (249)
31 3kzg_A Arginine 3RD transport 90.5 0.76 2.6E-05 40.2 7.9 101 97-212 110-214 (237)
32 3k4u_A Binding component of AB 90.3 0.63 2.1E-05 41.0 7.2 98 97-212 115-212 (245)
33 4i62_A Amino acid ABC transpor 86.1 1.1 3.7E-05 39.7 5.9 49 97-147 150-198 (269)
34 3del_B Arginine binding protei 86.0 2.7 9.2E-05 36.5 8.4 48 97-147 118-165 (242)
35 2y7i_A STM4351; arginine-bindi 85.8 1.2 4.2E-05 38.2 5.9 49 97-147 112-160 (229)
36 2nyi_A Unknown protein; protei 85.3 2.6 8.8E-05 37.4 8.0 35 286-320 93-127 (195)
37 3kbr_A Cyclohexadienyl dehydra 85.3 1.1 3.8E-05 39.0 5.5 49 97-147 125-173 (239)
38 3lou_A Formyltetrahydrofolate 84.9 4.7 0.00016 38.5 10.0 67 286-367 10-81 (292)
39 4h5g_A Amino acid ABC superfam 84.5 1.3 4.5E-05 39.3 5.7 49 97-147 123-171 (243)
40 3i6v_A Periplasmic His/Glu/Gln 84.1 4.5 0.00015 35.3 9.0 90 99-212 108-201 (232)
41 2yjp_A Putative ABC transporte 83.8 1.5 5.1E-05 40.2 5.8 50 97-148 164-213 (291)
42 3qax_A Probable ABC transporte 83.8 3.8 0.00013 36.0 8.4 93 97-212 139-237 (268)
43 2pfz_A Putative exported prote 83.7 27 0.00091 32.5 14.7 170 97-274 2-214 (301)
44 3tql_A Arginine-binding protei 83.6 1.3 4.6E-05 37.7 5.1 49 97-147 109-158 (227)
45 3obi_A Formyltetrahydrofolate 82.4 7.1 0.00024 37.1 10.1 67 286-367 6-75 (288)
46 3o1l_A Formyltetrahydrofolate 81.0 8.8 0.0003 36.8 10.3 67 286-367 22-91 (302)
47 2vha_A Periplasmic binding tra 80.8 3.3 0.00011 37.3 6.9 49 97-147 130-182 (287)
48 1lst_A Lysine, arginine, ornit 80.8 2.2 7.6E-05 36.9 5.5 50 97-148 111-162 (239)
49 2qpq_A Protein BUG27; alpha/be 80.5 3.6 0.00012 39.1 7.3 51 97-148 130-184 (301)
50 3n0v_A Formyltetrahydrofolate 80.3 6 0.00021 37.6 8.8 67 286-367 8-76 (286)
51 3k5p_A D-3-phosphoglycerate de 80.1 11 0.00037 37.8 10.9 69 286-373 343-411 (416)
52 1u8s_A Glycine cleavage system 79.6 7.3 0.00025 34.0 8.6 35 287-321 7-41 (192)
53 3nrb_A Formyltetrahydrofolate 79.5 5.2 0.00018 38.1 8.0 67 286-367 7-74 (287)
54 2vpn_A Periplasmic substrate b 79.3 31 0.0011 32.3 13.5 172 97-274 2-217 (316)
55 4dz1_A DALS D-alanine transpor 78.8 1.6 5.4E-05 39.0 4.0 81 97-187 137-225 (259)
56 2pfy_A Putative exported prote 78.4 20 0.00067 33.4 11.7 155 97-259 3-199 (301)
57 2pyy_A Ionotropic glutamate re 77.8 8 0.00027 32.7 8.1 81 97-186 112-192 (228)
58 2q88_A EHUB, putative ABC tran 77.3 3.4 0.00012 36.3 5.7 49 97-147 124-173 (257)
59 2pvu_A ARTJ; basic amino acid 76.9 3 0.0001 37.4 5.3 50 97-148 147-197 (272)
60 3ksx_A Nitrate transport prote 76.6 29 0.00099 32.0 12.3 133 93-233 26-177 (324)
61 3un6_A Hypothetical protein sa 75.8 38 0.0013 31.5 13.0 130 95-233 51-201 (341)
62 1sc6_A PGDH, D-3-phosphoglycer 75.1 11 0.00037 37.5 9.3 64 286-368 331-394 (404)
63 3hv1_A Polar amino acid ABC up 74.3 1.7 5.9E-05 38.7 2.9 98 97-212 127-232 (268)
64 1ygy_A PGDH, D-3-phosphoglycer 73.1 12 0.00043 38.2 9.4 71 286-374 454-525 (529)
65 2nyi_A Unknown protein; protei 72.4 11 0.00039 33.2 7.8 35 287-321 6-40 (195)
66 2xwv_A Sialic acid-binding per 72.3 64 0.0022 30.2 13.7 173 97-274 4-220 (312)
67 2hpg_A ABC transporter, peripl 72.2 12 0.0004 35.7 8.4 161 94-259 7-219 (327)
68 1ii5_A SLR1257 protein; membra 70.9 5.7 0.00019 33.9 5.4 48 97-148 116-163 (233)
69 3mtj_A Homoserine dehydrogenas 69.2 9.9 0.00034 38.4 7.4 68 286-368 357-426 (444)
70 2yln_A Putative ABC transporte 68.4 8.7 0.0003 34.8 6.3 48 97-148 164-211 (283)
71 3p96_A Phosphoserine phosphata 67.4 16 0.00056 35.5 8.5 35 288-322 14-48 (415)
72 3kzg_A Arginine 3RD transport 67.1 10 0.00035 32.7 6.3 115 121-250 45-165 (237)
73 2v25_A Major cell-binding fact 65.6 5.1 0.00017 34.9 4.0 50 97-148 148-201 (259)
74 2x26_A Periplasmic aliphatic s 65.0 42 0.0014 30.4 10.4 139 96-244 3-160 (308)
75 2ozz_A Hypothetical protein YH 64.4 17 0.00057 33.5 7.4 113 117-242 40-161 (231)
76 3uif_A Sulfonate ABC transport 64.4 57 0.0019 30.4 11.4 115 121-245 46-175 (348)
77 2re1_A Aspartokinase, alpha an 61.6 10 0.00035 32.5 5.1 34 286-319 25-59 (167)
78 3jv9_A OXYR, transcriptional r 61.3 67 0.0023 26.4 12.5 145 94-248 2-164 (219)
79 1ixc_A CBNR, LYSR-type regulat 61.0 86 0.0029 27.5 13.5 144 94-247 89-247 (294)
80 3i6v_A Periplasmic His/Glu/Gln 60.6 19 0.00066 31.1 6.9 111 120-248 45-157 (232)
81 3mpk_A Virulence sensor protei 60.3 54 0.0018 28.9 10.0 113 120-248 72-192 (267)
82 4eq9_A ABC transporter substra 60.2 24 0.00083 30.2 7.4 49 97-147 115-169 (246)
83 2zzv_A ABC transporter, solute 59.9 57 0.0019 31.1 10.7 133 95-233 33-210 (361)
84 2dvz_A BUGE, putative exported 58.0 11 0.00038 35.9 5.1 51 97-148 143-197 (314)
85 3tql_A Arginine-binding protei 57.8 44 0.0015 27.8 8.6 113 121-249 43-164 (227)
86 1tdj_A Biosynthetic threonine 56.4 14 0.00048 38.0 5.9 69 286-372 338-406 (514)
87 2f5x_A BUGD; periplasmic bindi 56.1 11 0.00038 35.9 4.8 51 97-148 139-193 (312)
88 3s1t_A Aspartokinase; ACT doma 55.4 27 0.00091 30.5 6.8 59 292-366 23-82 (181)
89 2pyy_A Ionotropic glutamate re 54.9 91 0.0031 25.9 12.4 115 120-249 41-164 (228)
90 4go7_X Aspartokinase; transfer 54.6 22 0.00075 31.9 6.2 31 292-322 42-72 (200)
91 3del_B Arginine binding protei 54.3 35 0.0012 29.2 7.4 114 120-250 51-172 (242)
92 3qsl_A Putative exported prote 54.0 13 0.00044 34.1 4.8 49 98-147 139-194 (346)
93 3mah_A Aspartokinase; aspartat 53.8 12 0.00039 31.8 4.0 50 294-367 29-78 (157)
94 4ab5_A Transcriptional regulat 52.7 70 0.0024 26.4 8.9 146 94-249 6-163 (222)
95 3ix1_A N-formyl-4-amino-5-amin 51.6 63 0.0022 29.1 9.1 87 121-214 36-129 (302)
96 1ii5_A SLR1257 protein; membra 51.0 1.1E+02 0.0037 25.5 12.1 117 120-249 45-168 (233)
97 1us5_A Putative GLUR0 ligand b 50.9 1E+02 0.0035 27.8 10.4 146 95-243 18-187 (314)
98 3ho7_A OXYR; beta-alpha-barrel 50.0 30 0.001 29.1 6.1 144 95-248 10-167 (232)
99 3qax_A Probable ABC transporte 48.5 1.1E+02 0.0036 26.3 9.7 114 120-250 71-193 (268)
100 2dtj_A Aspartokinase; protein- 48.0 19 0.00065 31.2 4.6 34 286-319 15-49 (178)
101 4i62_A Amino acid ABC transpor 48.0 51 0.0017 28.5 7.5 114 120-249 82-204 (269)
102 2dt9_A Aspartokinase; protein- 47.8 32 0.0011 29.2 6.0 29 292-320 23-51 (167)
103 2h9b_A HTH-type transcriptiona 47.8 1.5E+02 0.0053 26.4 12.6 141 97-247 91-248 (312)
104 1wdn_A GLNBP, glutamine bindin 46.9 84 0.0029 26.0 8.5 114 120-249 42-163 (226)
105 4ddd_A Immunogenic protein; ss 46.5 23 0.00079 33.5 5.3 51 97-148 146-203 (327)
106 3qsl_A Putative exported prote 46.0 88 0.003 28.3 9.2 130 96-233 33-186 (346)
107 1zbm_A Hypothetical protein AF 45.7 23 0.0008 31.8 5.0 51 97-149 103-153 (280)
108 3hn0_A Nitrate transport prote 45.3 19 0.00066 33.1 4.4 50 97-147 96-150 (283)
109 2y7p_A LYSR-type regulatory pr 44.8 71 0.0024 27.0 7.8 143 94-247 6-161 (218)
110 3uif_A Sulfonate ABC transport 44.2 21 0.00071 33.5 4.5 48 97-147 119-173 (348)
111 3n5l_A Binding protein compone 43.9 41 0.0014 31.3 6.6 84 96-188 115-213 (310)
112 1xs5_A 29 kDa protein, membran 43.6 16 0.00056 33.4 3.6 110 96-214 3-124 (241)
113 2yln_A Putative ABC transporte 42.5 65 0.0022 28.8 7.5 113 120-248 97-215 (283)
114 3h7m_A Sensor protein; histidi 42.5 1.5E+02 0.005 24.7 10.7 112 120-248 51-170 (234)
115 3fzv_A Probable transcriptiona 41.6 1.1E+02 0.0037 27.0 8.9 133 94-233 93-238 (306)
116 4f3p_A Glutamine-binding perip 41.3 1.3E+02 0.0044 25.7 9.1 114 120-249 63-184 (249)
117 2hxr_A HTH-type transcriptiona 41.2 1.6E+02 0.0054 24.7 13.8 144 95-248 29-185 (238)
118 3kbr_A Cyclohexadienyl dehydra 39.6 11 0.00039 32.3 1.7 114 121-250 56-180 (239)
119 2pvu_A ARTJ; basic amino acid 39.0 90 0.0031 27.3 7.8 114 120-249 81-202 (272)
120 3fxq_A LYSR type regulator of 38.7 2E+02 0.0069 25.4 10.3 120 117-248 117-248 (305)
121 4ddd_A Immunogenic protein; ss 38.3 1.8E+02 0.0061 27.1 10.1 136 95-233 31-194 (327)
122 4dz1_A DALS D-alanine transpor 38.2 2E+02 0.0067 24.9 10.3 116 120-249 69-197 (259)
123 1uth_A LYSR-type regulatory pr 37.7 62 0.0021 29.3 6.6 121 117-248 130-259 (315)
124 3hv1_A Polar amino acid ABC up 37.0 14 0.00049 32.5 2.0 113 121-249 62-188 (268)
125 3ab4_A Aspartokinase; aspartat 36.3 1.5E+02 0.0052 29.0 9.6 66 286-367 264-331 (421)
126 3onm_A Transcriptional regulat 36.0 2E+02 0.0067 24.3 12.8 135 93-247 24-171 (238)
127 2x7q_A Ca3427, possible thiami 35.7 2.5E+02 0.0087 25.5 11.8 131 95-233 14-165 (321)
128 3tvi_A Aspartokinase; structur 35.7 1.6E+02 0.0053 29.5 9.6 100 246-369 253-363 (446)
129 1p99_A Hypothetical protein PG 35.5 21 0.00072 33.6 3.0 88 96-193 39-134 (295)
130 2iee_A ORF2, probable ABC tran 35.2 29 0.001 30.7 3.9 46 97-147 132-179 (271)
131 3oxn_A Putative transcriptiona 34.9 1.2E+02 0.0043 25.5 7.8 145 93-249 16-173 (241)
132 2h98_A HTH-type transcriptiona 34.0 2.6E+02 0.0089 25.1 13.2 141 97-247 91-248 (313)
133 4gvo_A LMO2349 protein; struct 32.6 1.4E+02 0.0049 25.6 8.0 80 97-187 118-205 (243)
134 3k4u_A Binding component of AB 32.1 58 0.002 27.9 5.2 113 121-249 46-169 (245)
135 2ql3_A Probable transcriptiona 31.4 2.1E+02 0.0072 23.2 12.5 139 96-244 5-156 (209)
136 3ksx_A Nitrate transport prote 31.0 59 0.002 29.8 5.3 48 97-147 131-185 (324)
137 2dtj_A Aspartokinase; protein- 30.1 1E+02 0.0034 26.5 6.3 33 286-318 97-130 (178)
138 1sw5_A Osmoprotection protein 29.8 88 0.003 28.4 6.2 137 121-258 36-207 (275)
139 2x26_A Periplasmic aliphatic s 29.6 54 0.0019 29.6 4.7 47 98-147 106-159 (308)
140 4eq9_A ABC transporter substra 27.3 2.1E+02 0.0071 24.0 7.9 115 121-249 49-175 (246)
141 2yjp_A Putative ABC transporte 26.9 1E+02 0.0034 27.6 6.0 113 121-249 99-218 (291)
142 2re1_A Aspartokinase, alpha an 26.2 46 0.0016 28.3 3.4 33 286-318 105-138 (167)
143 4ef1_A Pheromone COB1/lipoprot 25.9 3.9E+02 0.013 24.5 10.0 149 96-257 4-190 (246)
144 2czl_A Hypothetical protein TT 25.8 78 0.0027 28.1 5.0 49 97-147 96-144 (272)
145 2hzl_A Trap-T family sorbitol/ 24.5 38 0.0013 32.3 2.8 121 96-220 32-196 (365)
146 2rc8_A Glutamate [NMDA] recept 24.2 61 0.0021 29.3 4.0 80 97-187 170-259 (294)
147 2dt9_A Aspartokinase; protein- 24.2 58 0.002 27.6 3.6 34 285-318 96-130 (167)
148 4esw_A Pyrimidine biosynthesis 24.2 1.4E+02 0.0048 27.6 6.7 88 121-215 40-134 (342)
149 3p7i_A PHND, subunit of alkylp 24.1 61 0.0021 30.5 4.1 82 97-187 126-221 (321)
150 1r9l_A Glycine betaine-binding 24.0 3E+02 0.01 25.5 8.9 160 96-259 8-210 (309)
151 3n5l_A Binding protein compone 22.0 86 0.0029 29.1 4.6 53 95-147 3-64 (310)
152 1tdj_A Biosynthetic threonine 21.7 85 0.0029 32.1 4.8 33 289-322 436-468 (514)
153 3fxb_A Trap dicarboxylate tran 21.4 1.1E+02 0.0037 28.9 5.2 161 94-261 13-217 (326)
154 3lte_A Response regulator; str 21.1 85 0.0029 23.9 3.8 38 196-233 12-49 (132)
155 3cg4_A Response regulator rece 20.6 2.8E+02 0.0097 21.0 7.4 109 196-307 13-124 (142)
156 1atg_A MODA, periplasmic molyb 20.5 86 0.003 26.1 4.0 51 99-149 106-166 (231)
157 2ozz_A Hypothetical protein YH 20.5 91 0.0031 28.5 4.3 47 98-146 113-161 (231)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=9.1e-91 Score=672.92 Aligned_cols=267 Identities=48% Similarity=0.726 Sum_probs=255.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
+++||||||+|||||+||+++| +++||+||+|||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4699999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCcee
Q 016702 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNIL 255 (384)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il 255 (384)
||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++++++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 9999999999999999999999999999999999997 899999999999999999987788999999999999999999
Q ss_pred eccccCCCCCeeEEEEEeeCCCC--------CCCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCC
Q 016702 256 ADRIQDEPDNITRFLVLARDPII--------PRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPL 327 (384)
Q Consensus 256 ~~~I~D~~~N~TRF~vi~~~~~~--------~~~~~~~Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~ 327 (384)
+++|||.++|+|||+||++++.. +. .+.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~- 240 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA- 240 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST-
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC-
Confidence 99999999999999999998754 22 125799999999999999999999999999999999999999864
Q ss_pred ccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCC
Q 016702 328 RVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 381 (384)
Q Consensus 328 ~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~~~vkvLGsYp~~ 381 (384)
|+|.||||++||.+|++++++|++|++.+.++|+|||||..
T Consensus 241 -------------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 -------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp -------------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred -------------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999975
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=8.7e-90 Score=673.81 Aligned_cols=273 Identities=30% Similarity=0.480 Sum_probs=256.6
Q ss_pred CceEEEEECCCCcHHHHHHHHHCC--CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccC-CeEEEE
Q 016702 96 TKVRISFKGLPGSFSEDAALKAYP--KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH-RLHIVG 172 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS~~AA~~~f~--~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~-~l~I~g 172 (384)
.+++||||||+|||||+||+++|+ +.+++||.||+|||++|++|++||||||||||++|+|.+|||+|.++ +|+|+|
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Ivg 84 (313)
T 3mwb_A 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIR 84 (313)
T ss_dssp --CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEE
T ss_pred cccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEE
Confidence 357999999999999999999984 47899999999999999999999999999999999999999999985 799999
Q ss_pred EEEEeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHc
Q 016702 173 EVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (384)
Q Consensus 173 Ei~l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~y 250 (384)
|+.+||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++++++++++.|||||+.||++|
T Consensus 85 E~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 164 (313)
T 3mwb_A 85 EALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQ 164 (313)
T ss_dssp EEEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHC
T ss_pred EEEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHc
Confidence 99999999999999999999999999999999999999986 6899999999999999998766689999999999999
Q ss_pred C-CceeeccccCCCCCeeEEEEEeeCCCCCCCCCCceEEEEEEeC-CCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCc
Q 016702 251 G-LNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLD-EGPGVLFKALAVFALREINLTKIESRPQRKRPLR 328 (384)
Q Consensus 251 g-L~il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~Ktsl~f~~~-~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~ 328 (384)
| |+||+++|||.++|+|||+||+++...+...+.+||||+|+++ |+||+|+++|++|+.+|||||||||||+++.+
T Consensus 165 g~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-- 242 (313)
T 3mwb_A 165 PGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL-- 242 (313)
T ss_dssp TTCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST--
T ss_pred CChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCC--
Confidence 9 9999999999999999999999987544334568999999997 99999999999999999999999999999864
Q ss_pred cccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCCC
Q 016702 329 VVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDA 382 (384)
Q Consensus 329 ~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~~~vkvLGsYp~~~ 382 (384)
|+|+||||++||.+|++++++|++|+..|.++|+|||||+..
T Consensus 243 ------------~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~ 284 (313)
T 3mwb_A 243 ------------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARAD 284 (313)
T ss_dssp ------------TSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred ------------ccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCc
Confidence 999999999999999999999999999999999999999854
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=4e-89 Score=656.23 Aligned_cols=261 Identities=27% Similarity=0.397 Sum_probs=249.5
Q ss_pred CceEEEEECCCCcHHHHHHHHHCCCC--cccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEE
Q 016702 96 TKVRISFKGLPGSFSEDAALKAYPKC--ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGE 173 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS~~AA~~~f~~~--~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gE 173 (384)
.+++||||||+|||||+||+++|++. +++||+||+|||++|++|++||||||||||++|+|.+|||+|.+++++|+||
T Consensus 2 ~~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE 81 (267)
T 2qmw_A 2 NAMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGE 81 (267)
T ss_dssp --CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEE
T ss_pred CccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEE
Confidence 46899999999999999999999875 4999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCc
Q 016702 174 VQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLN 253 (384)
Q Consensus 174 i~l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~ 253 (384)
+.+||+|||++++|.++++|++||||||||+||++||++++++.+++.|||+||+++++ + .|||||+.||++|||+
T Consensus 82 ~~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~ 157 (267)
T 2qmw_A 82 IRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFT 157 (267)
T ss_dssp EEEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCC
T ss_pred EEEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCc
Confidence 99999999999999899999999999999999999999988999999999999999986 3 9999999999999999
Q ss_pred eeeccccCCCCCeeEEEEEeeCCCCCCCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccc
Q 016702 254 ILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTL---DEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVV 330 (384)
Q Consensus 254 il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~Ktsl~f~~---~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~ 330 (384)
||+++|||.++|+|||+||++++ .+ + .+||||+|++ +|+||+|+++|++|+.+|||||||||||+++.+
T Consensus 158 il~~~I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~---- 229 (267)
T 2qmw_A 158 PIDTHIEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL---- 229 (267)
T ss_dssp EEEECCCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST----
T ss_pred EeeccccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCC----
Confidence 99999999999999999999987 33 2 5799999999 899999999999999999999999999999864
Q ss_pred cCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEcccc
Q 016702 331 DDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYP 379 (384)
Q Consensus 331 ~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~~~vkvLGsYp 379 (384)
|+|.||||++ |.+|+.++++|++|+..+.++|+|||||
T Consensus 230 ----------~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~kiLGsY~ 267 (267)
T 2qmw_A 230 ----------GMYRFFVQAD-SAITTDIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp ----------TCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ----------ccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEEEeeeC
Confidence 9999999999 9999999999999999999999999997
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=1.2e-86 Score=655.50 Aligned_cols=270 Identities=24% Similarity=0.360 Sum_probs=249.3
Q ss_pred CCceEEEEECCCCcHHHHHHHHHCC--------CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccC
Q 016702 95 GTKVRISFKGLPGSFSEDAALKAYP--------KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH 166 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS~~AA~~~f~--------~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~ 166 (384)
..++|||||||+|||||+||+++|+ +.+++||.||+|||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 4 ~~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~ 82 (329)
T 3luy_A 4 MSARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDA 82 (329)
T ss_dssp CCCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTC
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhcc
Confidence 3578999999999999999999752 468899999999999999999 9999999999999999999999875
Q ss_pred -CeEEEEEEEEeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHH
Q 016702 167 -RLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASAR 245 (384)
Q Consensus 167 -~l~I~gEi~l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~ 245 (384)
+|+|+||+.+||+|||++.+|.++++|++||||||||+||++||++++++.+++.|||+||++++. +.|||||+.
T Consensus 83 ~~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~~----~~AAIas~~ 158 (329)
T 3luy_A 83 KDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLIP----GEIAFGPAI 158 (329)
T ss_dssp SSCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCCT----TEEEEECTT
T ss_pred CCcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhCC----CCceeCCHH
Confidence 899999999999999999999999999999999999999999999999999999999999998753 689999999
Q ss_pred HHHHcCCceeeccccCCCCCeeEEEEEeeCCCC------CCC-CCCceEEEEEEeC--CCcchHHHHHHHHHhCCceeee
Q 016702 246 AAEIYGLNILADRIQDEPDNITRFLVLARDPII------PRT-DKLFKTSIVFTLD--EGPGVLFKALAVFALREINLTK 316 (384)
Q Consensus 246 aA~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~------~~~-~~~~Ktsl~f~~~--~~pGaL~~~L~~F~~~~INLtk 316 (384)
||++|||+||+++|||.++|+|||+||++++.. +.. ...+|||++|.++ |+||+|+++|++|+.+||||||
T Consensus 159 AAelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtk 238 (329)
T 3luy_A 159 CGELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTS 238 (329)
T ss_dssp HHHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred HHHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEE
Confidence 999999999999999999999999999997642 111 1236888888876 5899999999999999999999
Q ss_pred eeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCCCC
Q 016702 317 IESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDAT 383 (384)
Q Consensus 317 IESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~~~vkvLGsYp~~~~ 383 (384)
|||||+++.+ |+|+||||++||.+|++++++|++|+..|.++|+|||||+...
T Consensus 239 IESRP~~~~~--------------~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~~ 291 (329)
T 3luy_A 239 FISRPIKGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRREH 291 (329)
T ss_dssp EEEEEETTEE--------------EEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCCC
T ss_pred EEeeECCCCC--------------ccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEEEeeccCCCc
Confidence 9999999864 9999999999999999999999999999999999999998653
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.82 E-value=1.3e-20 Score=189.78 Aligned_cols=81 Identities=30% Similarity=0.432 Sum_probs=77.2
Q ss_pred CCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHH
Q 016702 282 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNA 361 (384)
Q Consensus 282 ~~~~Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~a 361 (384)
++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+ |+|.|||||+ |.+|++++++
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~--------------~eY~FfVD~e-h~~d~~v~~A 94 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------DEYEFFTYLD-KRTKPVLGSI 94 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCT--------------TEEEEEECBC-GGGHHHHHHH
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCC--------------ccEEEEEEEe-eCCCHHHHHH
Confidence 345799999999999999999999999999999999999999864 9999999999 9999999999
Q ss_pred HHHHHHh-cCceEEEcc
Q 016702 362 LGHLQEF-ATFLRVLGC 377 (384)
Q Consensus 362 l~~L~~~-~~~vkvLGs 377 (384)
|++|+.. +.++|+||+
T Consensus 95 L~eL~~~~~~~vkiLGs 111 (429)
T 1phz_A 95 IKSLRNDIGATVHELSR 111 (429)
T ss_dssp HHHHHHTTCCCEEEEET
T ss_pred HHHHHhhccceEEECCC
Confidence 9999999 999999999
No 6
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=98.62 E-value=3.6e-09 Score=85.10 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=49.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhCCCCCCccc-------ee-eccCCCCc
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPKPLTVAD-------FT-VTPNDGTK 97 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n~GPL~~e~-------i~-~s~~~~~~ 97 (384)
.+|.+|++||++|+.++.+||++|...| + | ||+++|.++...++++|+++. || .|+.+|.+
T Consensus 14 ~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~vl~~~~~~~~~~l~~~~i~~if~~ii~~s~~~q~~ 87 (90)
T 2d8d_A 14 RVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEIFKASLDLEER 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999998877 3 4 999999999999999999874 45 45566553
No 7
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=98.30 E-value=2.4e-07 Score=93.04 Aligned_cols=60 Identities=7% Similarity=-0.111 Sum_probs=49.8
Q ss_pred CCCCccCceeccccCCCCCCCcccchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhCCCCCCccc
Q 016702 14 SGSRASGLVFNGVRNSNRTPRKCVCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPKPLTVAD 87 (384)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n~GPL~~e~ 87 (384)
+..-|.+|| -+|.||++||+||++++++||++|.+.| + + ||+++|+++.+.++++|+.+.
T Consensus 30 L~~lR~~ID--------------~ID~~il~LL~eR~~~~~~Va~~K~~~g~~i~dp~RE~~vl~~~~~~~~~~l~~~~ 94 (385)
T 3nvt_A 30 LEELRTQVD--------------QLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANEGPFEDST 94 (385)
T ss_dssp --CCTTTTT--------------HHHHHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHCCSSSCHHH
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHhccCCCCHHH
Confidence 445677777 8999999999999999999999999887 3 4 999999999999999999863
No 8
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=98.24 E-value=9.6e-08 Score=79.38 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=45.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhh-CCCCCCccc
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLIS-LPKPLTVAD 87 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~-n~GPL~~e~ 87 (384)
.+|.+|++||++|+.++.+||++|...| + | ||+++|.++... +.++|+++.
T Consensus 16 ~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~ 72 (109)
T 1ecm_A 16 ALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHY 72 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHH
Confidence 8999999999999999999999999877 3 4 999999999886 778898764
No 9
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=98.19 E-value=3.1e-07 Score=75.38 Aligned_cols=50 Identities=10% Similarity=-0.108 Sum_probs=44.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhh-CCCCCCccc
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLIS-LPKPLTVAD 87 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~-n~GPL~~e~ 87 (384)
.+|.+|++||++|+.++.+||++|.. | + | ||+++|.++... +.++|+.+.
T Consensus 19 ~iD~~il~LL~~R~~~~~~i~~~K~~-~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~ 74 (101)
T 3ret_A 19 RIDLDIVQALGRRMDYVKAASRFEAS-EAAIPAPERVAAMLPERARWAEENGLDAPF 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCSS-GGGTTCHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHhhhCCCCHHH
Confidence 79999999999999999999999998 7 3 4 999999999885 457888753
No 10
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=98.12 E-value=4.5e-07 Score=73.06 Aligned_cols=43 Identities=7% Similarity=-0.206 Sum_probs=39.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhC
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISL 79 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n 79 (384)
.+|.+|++||++|++++.+||++|...| + | ||+++|.++.+.+
T Consensus 23 ~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~a 70 (90)
T 2vkl_A 23 RLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELG 70 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHc
Confidence 8999999999999999999999998776 3 4 9999999998866
No 11
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=98.11 E-value=3.3e-07 Score=77.01 Aligned_cols=51 Identities=2% Similarity=-0.232 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhC-CCCCCccc
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISL-PKPLTVAD 87 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n-~GPL~~e~ 87 (384)
.+|.+|++||++|+.++.+||++|...| + + ||++||.++.... .++|+.+.
T Consensus 23 ~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~ 79 (114)
T 3rmi_A 23 NFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDF 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 7999999999999999999999999887 3 4 9999999998874 78888653
No 12
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=98.03 E-value=8.9e-07 Score=71.52 Aligned_cols=41 Identities=10% Similarity=-0.076 Sum_probs=37.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhh
Q 016702 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLI 77 (384)
Q Consensus 37 ~~~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~ 77 (384)
.+|.+|++||++|++++.+||++|...| + | ||+++|.++..
T Consensus 28 ~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~ 73 (91)
T 1ybz_A 28 KIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGE 73 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHH
Confidence 7999999999999999999999999877 3 4 99999999876
No 13
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=97.94 E-value=4.1e-07 Score=75.24 Aligned_cols=51 Identities=4% Similarity=-0.186 Sum_probs=46.3
Q ss_pred cchhhHH--------HHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhCCC-CCCccc
Q 016702 37 VCRGGFS--------GLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPK-PLTVAD 87 (384)
Q Consensus 37 ~~~~~il--------~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n~G-PL~~e~ 87 (384)
.+|.+|+ +||++|+.++.+||++|...| + | ||+++|.++...+.+ +++.+.
T Consensus 14 ~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~ 78 (104)
T 2gtv_X 14 EIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENI 78 (104)
T ss_dssp HHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHH
Confidence 7999999 999999999999999998877 3 4 999999999998888 888764
No 14
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=97.60 E-value=5.3e-06 Score=73.32 Aligned_cols=48 Identities=8% Similarity=0.046 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhCCC-CCCccc
Q 016702 40 GGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPK-PLTVAD 87 (384)
Q Consensus 40 ~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n~G-PL~~e~ 87 (384)
.+|++||++|++++.+||++|.+.| + | ||++||.++...+.+ +|+.+.
T Consensus 4 ~qLl~LL~eR~~la~~Va~~K~~~g~pI~Dp~RE~evL~~l~~~a~~~gL~~~~ 57 (156)
T 2gbb_A 4 GQTAPLINERLSYMKDVAGYKAENHLPIEDRIQEEKVINSAMAQAESLGLNGES 57 (156)
T ss_dssp SCSHHHHHHHHTTHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHhhcCCCCHHH
Confidence 4799999999999999999999887 4 4 999999999999888 888764
No 15
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=97.48 E-value=1.7e-05 Score=70.71 Aligned_cols=49 Identities=6% Similarity=-0.055 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCC--C--C-chhHHHHHhhhhCC-CCCCccc
Q 016702 39 RGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLP-KPLTVAD 87 (384)
Q Consensus 39 ~~~il~LLn~Ra~~a~eig~~K~~~~--~--~-RE~~il~~~~~~n~-GPL~~e~ 87 (384)
-.+|++||++|+.++.+||++|...| + + ||++||.++...+. ++|+.+.
T Consensus 6 ~~~Lv~LLaeR~~la~~Va~~K~~~~~pI~dp~RE~eVL~r~~~~a~~~gL~~~~ 60 (166)
T 2fp1_A 6 LAELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDPDY 60 (166)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhCCCCHHH
Confidence 36899999999999999999998877 4 4 99999999998877 6888753
No 16
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.94 E-value=0.0048 Score=47.42 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=49.9
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHH
Q 016702 285 FKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGH 364 (384)
Q Consensus 285 ~Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~ 364 (384)
..+.|.+..+|+||.|.++.+.|+++|+|+..+...+... . ....|-+++. +...++++++.
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-~--------------~~~~i~v~~~---~~~~l~~l~~~ 65 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-I--------------FTCNLMIFVK---NTDKLTTLMDK 65 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-E--------------EEEEEEEEES---SHHHHHHHHHH
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-E--------------EEEEEEEEEC---CHHHHHHHHHH
Confidence 3567778889999999999999999999999999876422 1 2233333432 34677888888
Q ss_pred HHHhcC
Q 016702 365 LQEFAT 370 (384)
Q Consensus 365 L~~~~~ 370 (384)
|++...
T Consensus 66 L~~~~~ 71 (88)
T 2ko1_A 66 LRKVQG 71 (88)
T ss_dssp HTTCTT
T ss_pred HhcCCC
Confidence 886543
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.58 E-value=0.015 Score=45.07 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCC
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 323 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~ 323 (384)
+..|.+..+|+||.|.++.+.|+.+|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 45677888999999999999999999999999887643
No 18
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.33 E-value=0.023 Score=50.35 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L 365 (384)
+-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... .-..+.+-+++ ++..++++.+.|
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~---------------~~sriti~V~~--d~~~leqI~kqL 65 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP---------------TLSRMTIQTVG--DEKVLEQIEKQL 65 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS---------------SEEEEEEEEES--CHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCC---------------CEEEEEEEEec--cHHHHHHHHHHH
Confidence 3456677889999999999999999999999999997542 12344455554 367788888888
Q ss_pred HHhcCceE
Q 016702 366 QEFATFLR 373 (384)
Q Consensus 366 ~~~~~~vk 373 (384)
++.-.=++
T Consensus 66 ~Kl~dV~~ 73 (164)
T 2f1f_A 66 HKLVDVLR 73 (164)
T ss_dssp HHSTTEEE
T ss_pred cCCCCEEE
Confidence 87655333
No 19
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.11 E-value=0.03 Score=49.60 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=52.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L 365 (384)
|-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... .-..+.|-+++. +..++++.+.|
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~---------------g~sritivV~~d--~~~leql~kQL 66 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP---------------TLSRMTLVTNGP--DEIVEQITKQL 66 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST---------------TEEEEEEEEEEC--HHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCC---------------CEEEEEEEEecc--HHHHHHHHHHh
Confidence 4567777889999999999999999999999999987542 123344444443 67788888888
Q ss_pred HHhcCceE
Q 016702 366 QEFATFLR 373 (384)
Q Consensus 366 ~~~~~~vk 373 (384)
.+.-.=++
T Consensus 67 ~Kl~dV~~ 74 (165)
T 2pc6_A 67 NKLIEVVK 74 (165)
T ss_dssp HHSTTEEE
T ss_pred cCCCCEEE
Confidence 87655333
No 20
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=95.95 E-value=0.041 Score=49.97 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=53.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L 365 (384)
+-.|.+.+.|+||.|.++...|+.+|+|+..+-.-|.... .-..+.|-++|. +..++++.+.|
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~---------------gisRitIvV~g~--e~~ieqL~kQL 91 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP---------------GLSRLVIMVKGD--DKTIEQIEKQA 91 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST---------------TEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCC---------------CEEEEEEEEECC--HHHHHHHHHHh
Confidence 4567777899999999999999999999999999887542 123344444553 56788888888
Q ss_pred HHhcCceEE
Q 016702 366 QEFATFLRV 374 (384)
Q Consensus 366 ~~~~~~vkv 374 (384)
.+.-.-+++
T Consensus 92 ~KLidVikV 100 (193)
T 2fgc_A 92 YKLVEVVKV 100 (193)
T ss_dssp TTSTTEEEE
T ss_pred cCcCceEEE
Confidence 876554444
No 21
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=93.30 E-value=0.65 Score=39.75 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=64.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
..+|++ +.|+..+....+.+++.+++.+.+..+++++|.+|++|+.+.+-.. ....+ ......++.+.+....
T Consensus 109 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~~~~~----~~~~~~~l~~~~~~~~ 181 (226)
T 1wdn_A 109 GKVVAV--KSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPN-ILYFI----KTAGNGQFKAVGDSLE 181 (226)
T ss_dssp TCEEEE--ETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHHHH----HTTTTTTEEEEEEEEE
T ss_pred CCEEEE--EcCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH-HHHHH----HhCCCCceEEecCCcc
Confidence 468998 4677777777777777788889999999999999999998876321 11111 1111135777776655
Q ss_pred eeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
+...+++.+++ +|+-..+-.++|.+
T Consensus 182 ~~~~~~~~~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 182 AQQYGIAFPKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred cCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 66666766653 35555555666654
No 22
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=93.29 E-value=0.44 Score=40.52 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=48.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHh
Q 016702 289 IVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEF 368 (384)
Q Consensus 289 l~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~ 368 (384)
|-+...|++|.|.+++++++.+++|+..++.+|. + + +|+.++. .+...+..+...+++.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g------------------~-i~~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-G------------------R-IYLNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-T------------------E-EEEEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-C------------------E-EEEEEEe-CCHHHHHHHHHHHHcC
Confidence 5567789999999999999999999999999875 1 2 6777764 3445677777777776
Q ss_pred cCc
Q 016702 369 ATF 371 (384)
Q Consensus 369 ~~~ 371 (384)
...
T Consensus 62 ~~~ 64 (190)
T 2jhe_A 62 AGV 64 (190)
T ss_dssp TTE
T ss_pred CCe
Confidence 553
No 23
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=92.87 E-value=0.17 Score=46.70 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=44.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCC-CC-CCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR-KR-PLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALG 363 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~-~~-~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~ 363 (384)
...|.+...|+||.|.++++.++++++|+..+..+... +. . .....+||++.. .++++++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~n--------------g~A~I~IEV~d~----~Le~LL~ 65 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHE--------------GKALIYFEIEGG----DFEKILE 65 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTT--------------TEEEEEEEECSS----CHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcC--------------CEEEEEEEECCC----CHHHHHH
Confidence 46788889999999999999999999999999986643 21 1 112333777643 5667788
Q ss_pred HHHHh
Q 016702 364 HLQEF 368 (384)
Q Consensus 364 ~L~~~ 368 (384)
+|++.
T Consensus 66 kLrkI 70 (223)
T 1y7p_A 66 RVKTF 70 (223)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 87754
No 24
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.20 E-value=0.54 Score=39.48 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=30.3
Q ss_pred eEEEE-EEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 016702 286 KTSIV-FTLDEGPGVLFKALAVFALREINLTKIESRP 321 (384)
Q Consensus 286 Ktsl~-f~~~~~pGaL~~~L~~F~~~~INLtkIESRP 321 (384)
.++++ +..+|+||.|.++++.++++|||+..+.+.+
T Consensus 71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~ 107 (144)
T 2f06_A 71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA 107 (144)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence 34554 4789999999999999999999998877765
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=91.71 E-value=0.67 Score=38.86 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=30.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 016702 287 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 321 (384)
Q Consensus 287 tsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP 321 (384)
..|.+.++|+||.|.++.+.|+++|||+..|.--+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 44666789999999999999999999999886544
No 26
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=91.14 E-value=1 Score=38.76 Aligned_cols=98 Identities=12% Similarity=-0.010 Sum_probs=64.1
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
..+|++. .|+..+....+.+.+.+++.+.+.++++++|.+|++|+.+.+-.. . ...+......++.+.+....
T Consensus 117 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3h7m_A 117 GRKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVP-G----MYIIRENRLTNLVPVARSIA 189 (234)
T ss_dssp TSCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHH-H----HHHHHHTTCTTEEEEEEEEE
T ss_pred CCEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccHH-H----HHHHHhcCCCceEEeccccC
Confidence 4588885 577666655555556788899999999999999999999885321 1 11111111135777777666
Q ss_pred eeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
+...+++..++ +|+-..+-.++|.+
T Consensus 190 ~~~~~~~~~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 190 AQRYGYAVRQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp EEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 66667766553 45555566666654
No 27
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.03 E-value=2.4 Score=37.27 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=31.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 321 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP 321 (384)
.+.|.+..+|+||.|+++.+.|+.+|+|+..+...-
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t 128 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 128 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence 455667779999999999999999999999887763
No 28
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=91.02 E-value=0.58 Score=42.27 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=66.8
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..-. .....+. -....++.+.+....
T Consensus 139 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~~~~~~~----~~~~~~l~~~~~~~~ 211 (267)
T 3mpk_A 139 GRTVALV--RNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-SASYYVN----RYFAGKLRIASALDL 211 (267)
T ss_dssp TCEEEEE--TTCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-HHHHHHH----HHCTTTEEEEEECSS
T ss_pred CCEEEEe--CCchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-HHHHHHH----hcCCCceEEEeccCC
Confidence 4689987 46666666667788888999999999999999999999998622 1111111 111345888877553
Q ss_pred -eeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHhc
Q 016702 177 -AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL 213 (384)
Q Consensus 177 -~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~~ 213 (384)
+...+++.+++ +|+-..+..++|.+.
T Consensus 212 ~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 212 PPAEIALATTRG-----------QTELMSILNKALYSI 238 (267)
T ss_dssp CCEEEEEEEETT-----------CHHHHHHHHHHHHTS
T ss_pred CceeEEEEEcCC-----------CHHHHHHHHHHHHhC
Confidence 55556665543 566666677777653
No 29
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=90.63 E-value=1.2 Score=40.51 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=63.3
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeecccccccccccccccc-CCeEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR-HRLHIVGEVQ 175 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~-~~l~I~gEi~ 175 (384)
..+|++ +.|+..+....+.+++.+++.+.+.++++++|.+|++|+++..-. .... ++.+ .++.+.+...
T Consensus 153 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~-~~~~-------~~~~~~~l~~~~~~~ 222 (292)
T 1xt8_A 153 DKTLLL--NKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNT-LLFA-------WVKDHPDFKMGIKEL 222 (292)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHH-------HHHHCTTEEEEEEEE
T ss_pred CCEEEE--eCCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHH-HHHH-------HHHhCCCeEEccccc
Confidence 468988 478888777777777778888999999999999999999988522 1111 1111 2367776554
Q ss_pred Eeeee-eeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 176 LAANF-CLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 176 l~I~h-~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
-+..+ .++.+++ +|+-.....++|.+
T Consensus 223 ~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 223 GNKDVIAPAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp EEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred ccCceeEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 45555 5555442 45555666666655
No 30
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=90.60 E-value=1.4 Score=38.79 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=60.1
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
..+|++. .|+..+....+.++..+++.+++.++++++|.+|++|+.+..-.. ....+......++.+.++...
T Consensus 130 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-----~~~~~~~~~~~~l~~~~~~~~ 202 (249)
T 4f3p_A 130 GKVIAAK--TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPN-----VLFFVNNEGKGRVKVAGAPVS 202 (249)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHH-----HHHHHHTTTTTTEEEEEEEEE
T ss_pred CCEEEEe--CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHH-----HHHHHHhCCCCceEEecCCCC
Confidence 4689874 687777777777888888999999999999999999999986331 111111111245788888777
Q ss_pred eeeeeeecCCC
Q 016702 177 AANFCLLALPG 187 (384)
Q Consensus 177 ~I~h~Ll~~~g 187 (384)
+....++..++
T Consensus 203 ~~~~~~~~~k~ 213 (249)
T 4f3p_A 203 GDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEETT
T ss_pred CccEEEEEcCC
Confidence 77777777664
No 31
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=90.50 E-value=0.76 Score=40.21 Aligned_cols=101 Identities=10% Similarity=0.175 Sum_probs=63.4
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc---cCCeEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHRLHIVGE 173 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~---~~~l~I~gE 173 (384)
..+||+. .|+..+....+.++..+++.+.+.++++++|.+|++|+.+..-. .....+.. ...+. ..++.+.+.
T Consensus 110 g~~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~~ 185 (237)
T 3kzg_A 110 GKKIGVR--KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE-AAKYWMAS-EPYAYKLIGKKYKLIGK 185 (237)
T ss_dssp TCEEEEE--TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHHHHTT-SSTTHHHHCCSEEEEEE
T ss_pred CCEEEEe--cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH-HHHHHHHh-CCccccccCCceEEecC
Confidence 4689885 56665555556677788899999999999999999999988632 11111111 00000 226778776
Q ss_pred EE-EeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 174 VQ-LAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 174 i~-l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
.. .+...+++.+++ +|+-..+-.++|.+
T Consensus 186 ~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 186 KISIGEGYSIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp EEECTTCBCCEECGG-----------GHHHHHHHHHHHHH
T ss_pred ccccCccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 44 444555554432 46666666777665
No 32
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=90.29 E-value=0.63 Score=40.99 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=63.7
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..-. ..... +.......+.+.++...
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~ 187 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLP-FNVAF----MAQKGQGYLVHLDTSLT 187 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHH-HHHHH----HHHTTTTTEEEECCCCS
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHH-HHHHH----HhcCCccceeecCCCcc
Confidence 5689985 78888887777888888999999999999999999999988631 11111 11111223555544444
Q ss_pred eeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
+...+++.+++ +|+-..+..++|.+
T Consensus 188 ~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 212 (245)
T 3k4u_A 188 YEPLGWAIKKG-----------DPDFLNWLNHFLAQ 212 (245)
T ss_dssp CEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred cccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 45555655543 45555666666654
No 33
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=86.14 E-value=1.1 Score=39.66 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=42.1
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+|++ +.|+..+....+.+++.+++.+++.++++++|.+|++|+++.+
T Consensus 150 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 150 QKKVGA--QKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp -CEEEE--ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred CCeEEE--ecCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 468998 4688877777778888888999999999999999999999986
No 34
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=86.03 E-value=2.7 Score=36.55 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=40.1
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+||+. .|+..+....+ +++.+++.+.+.++++++|.+|++|+++..
T Consensus 118 g~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 165 (242)
T 3del_B 118 YRSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLE 165 (242)
T ss_dssp SSCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEEC
T ss_pred CCEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEec
Confidence 4578874 68877776665 777888889999999999999999999876
No 35
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=85.75 E-value=1.2 Score=38.24 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=41.2
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+||+ +.|+..+....+.+++.+++.+.+..+++++|.+|++|+.+.+
T Consensus 112 g~~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 112 GKKVGL--ENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp TCEEEE--ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEE--ecCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 468888 4677777766667777788899999999999999999999886
No 36
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=85.34 E-value=2.6 Score=37.43 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=30.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeee
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESR 320 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESR 320 (384)
++.|.+.-+|+||-++++-+.|+.+|+|+..+...
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 55666777999999999999999999999988775
No 37
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=85.31 E-value=1.1 Score=38.98 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=42.7
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+||+ +.|+..+....+.+++.+++.+++.++++++|.+|++|+.+..
T Consensus 125 g~~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIV--NPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEE--CTTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEE--cCCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 568888 5788888877778888889999999999999999999999875
No 38
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=84.89 E-value=4.7 Score=38.50 Aligned_cols=67 Identities=6% Similarity=0.121 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecC-----CCcHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS-----MADPRAQN 360 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~-----~~d~~v~~ 360 (384)
+..|.+.-+|+||-..++-+.++++|+|+..+...-.... ..|++-++++.. .+.+.+++
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~~~L~~ 74 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---------------ARFFVRCVFHATDDADALRVDALRR 74 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEECC----CCHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---------------CceEEEEEEEccCcccCCCHHHHHH
Confidence 4567777899999999999999999999999998842221 234444566554 23467777
Q ss_pred HHHHHHH
Q 016702 361 ALGHLQE 367 (384)
Q Consensus 361 al~~L~~ 367 (384)
.++.+.+
T Consensus 75 ~f~~la~ 81 (292)
T 3lou_A 75 EFEPIAE 81 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 39
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=84.53 E-value=1.3 Score=39.32 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=42.8
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+|+.. .|+..+....+.++..+++.+++..+++++|.+|++|+.+..
T Consensus 123 g~~i~v~--~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 123 SANIAAQ--KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CCEEEec--CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 3578874 688888888888998899999999999999999999998874
No 40
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=84.12 E-value=4.5 Score=35.31 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=59.2
Q ss_pred EEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeecccccccccccc-cccc--CCeEEEEEE-
Q 016702 99 RISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR--HRLHIVGEV- 174 (384)
Q Consensus 99 ~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlD-lL~~--~~l~I~gEi- 174 (384)
+||+. .|+..+....+. +.+++.+++.++++++|.+|++|+.+..-. ++. ++.+ .++.+.++.
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~~~~~~~~ 174 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD---------YLVPIVAESGGELMFVGDDV 174 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHTTTSSEEEEEEE
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH---------HHHHHHHhCCCCeEEecCCC
Confidence 89884 688777666654 578889999999999999999999987632 111 1112 457787753
Q ss_pred EEeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 175 QLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 175 ~l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
..+...+++.+++ +|+-..+..++|.+
T Consensus 175 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 175 PLGGGVGMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp ECSSCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 3344555555543 44445555555554
No 41
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=83.82 E-value=1.5 Score=40.19 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=42.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+|++ +.|+..+....+.+++.+++.+.+..+++++|.+|++|+++++-
T Consensus 164 gk~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~ 213 (291)
T 2yjp_A 164 DQTLLV--NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDN 213 (291)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CCEEEE--ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEecH
Confidence 468988 57888887777777777888899999999999999999999863
No 42
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=83.76 E-value=3.8 Score=35.96 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=59.7
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeecccccccccccc-cccc-CCeEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR-HRLHIVGEV 174 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlD-lL~~-~~l~I~gEi 174 (384)
..+|++. .|+..+....+ +++.+++++.+.++++++|.+|++|+++..-. ++. ++.+ .++.+.+..
T Consensus 139 g~~i~~~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~ 206 (268)
T 3qax_A 139 YSSVAVQ--TGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPS---------VGRVVLKDFPNLVATRLE 206 (268)
T ss_dssp SSCEEEE--TTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEECHH---------HHHHHGGGCTTEEEEEEE
T ss_pred CCEEEEe--cCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCcEEecCc
Confidence 4578874 67777766554 66778888999999999999999999987522 111 1122 236666644
Q ss_pred EEeee----eeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 175 QLAAN----FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 175 ~l~I~----h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
.-+.. .+++.+++ +|+-..+-.++|.+
T Consensus 207 ~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 237 (268)
T 3qax_A 207 LPPECWVLGCGLGVAKD-----------RPEEIQTIQQAITD 237 (268)
T ss_dssp CCGGGCBCCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 43333 45555442 45555666666655
No 43
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=83.67 E-value=27 Score=32.53 Aligned_cols=170 Identities=11% Similarity=0.020 Sum_probs=94.3
Q ss_pred ceEEEEECCCCcHHHHHHHHHC--------CCCcccCC-----CCHHHHHHHHHhCCCCeEEEeeeccccccc-------
Q 016702 97 KVRISFKGLPGSFSEDAALKAY--------PKCETVPC-----DEFEDTFKAVELWLADKAVLPIENSSSGSI------- 156 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f--------~~~~~~~~-----~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V------- 156 (384)
.+|++..-|+|+..++++..+- |..++..+ -+-.+++++|..|.+|++++..-+ ..|.+
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 80 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDG 80 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGG
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhc
Confidence 4689999999998888776542 23444332 234899999999999999986421 11110
Q ss_pred ------------------cccc-cccccCCeEEEEEEEEeeeeeeecCCC-CCcCCcc--EEEecHHHHHHHHHHHHhcC
Q 016702 157 ------------------HRNY-DLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLG 214 (384)
Q Consensus 157 ------------------~~tl-DlL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqAl~QC~~fL~~~~ 214 (384)
.+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... -..+++..|
T Consensus 81 lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 156 (301)
T 2pfz_A 81 LPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVG 156 (301)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcC
Confidence 0001 12334678887754444444 444333 3556666 55552 222 257888889
Q ss_pred CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccccCCCCCee-EEEEEee
Q 016702 215 VARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNIT-RFLVLAR 274 (384)
Q Consensus 215 ~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~D~~~N~T-RF~vi~~ 274 (384)
+..++. +.++....+..+ .-.|+..+.......++.=+.+.+....+.++ -++++.+
T Consensus 157 a~pv~~-~~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 157 AQPVTV-QQAELAQAMATG--VIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNK 214 (301)
T ss_dssp CEEEEC-CGGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEH
T ss_pred Ccceec-CHHHHHHHHhcC--eeeEEecCccccccccHHHHhhhheecccccceeEEEEcH
Confidence 877765 334444444443 23455666666555565433444433232333 3444443
No 44
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=83.62 E-value=1.3 Score=37.75 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=39.8
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCC-CcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPK-CETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~-~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+||+. .|+..+....+.++. .+++.+.+.++++++|.+|++|+.+..
T Consensus 109 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 158 (227)
T 3tql_A 109 GKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGD 158 (227)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESC
T ss_pred CCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeC
Confidence 4689885 566666666666666 788999999999999999999998875
No 45
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=82.44 E-value=7.1 Score=37.11 Aligned_cols=67 Identities=7% Similarity=0.177 Sum_probs=47.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecC---CCcHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS---MADPRAQNAL 362 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~---~~d~~v~~al 362 (384)
+..|.+.-+|+||-..++-+.++.+|+|+..+........ ..|++-+.++.. .+-..+++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~L~~~f 70 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTES---------------GHFFMRVVFNAAAKVIPLASLRTGF 70 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEESSCCCCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCC---------------CceEEEEEEEcCCCCCCHHHHHHHH
Confidence 4456777799999999999999999999999988743322 223333455432 3346778888
Q ss_pred HHHHH
Q 016702 363 GHLQE 367 (384)
Q Consensus 363 ~~L~~ 367 (384)
+.+.+
T Consensus 71 ~~la~ 75 (288)
T 3obi_A 71 GVIAA 75 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 46
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=81.03 E-value=8.8 Score=36.79 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=47.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecC---CCcHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS---MADPRAQNAL 362 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~---~~d~~v~~al 362 (384)
+..|.+.-+|+||-..++-+.++.+|+|+..+...-.+.. ..|++-++++.. .+.+.+++.+
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~---------------g~FfMr~~~~~~~~~~~~~~L~~~l 86 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLS---------------GWFFMRHEIRADTLPFDLDGFREAF 86 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTT---------------TEEEEEEEEEGGGSSSCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCC---------------CeEEEEEEEecCCCCCCHHHHHHHH
Confidence 5567777899999999999999999999999988753322 223333455542 2346777777
Q ss_pred HHHHH
Q 016702 363 GHLQE 367 (384)
Q Consensus 363 ~~L~~ 367 (384)
+.+.+
T Consensus 87 ~~la~ 91 (302)
T 3o1l_A 87 TPIAE 91 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 47
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=80.81 E-value=3.3 Score=37.32 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=39.3
Q ss_pred ceEEEEECCCCcHHHHHHHHHC----CCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAY----PKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f----~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+|++. .|+..+....+++ .+.+++++.+.++++.+|.+|++|+++..
T Consensus 130 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~ 182 (287)
T 2vha_A 130 GKAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMD 182 (287)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeC
Confidence 3589874 7887776666554 24678889999999999999999999875
No 48
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=80.75 E-value=2.2 Score=36.92 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred ceEEEEECCCCcHHHHHHHHHC--CCCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAY--PKCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f--~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+||+. .|+..+....+.+ .+.+++.+.+.++++++|.+|++|+.+.+-
T Consensus 111 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVL--QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDE 162 (239)
T ss_dssp TCEEEEE--TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCEEEEE--cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCc
Confidence 3579884 7887777766666 346788899999999999999999999863
No 49
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=80.51 E-value=3.6 Score=39.07 Aligned_cols=51 Identities=18% Similarity=0.016 Sum_probs=40.4
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C-CCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
+.+++..|+ ||-+|.++..+. | +...+|+.+..+++.++..|++|+++...
T Consensus 130 ~~~~g~~g~-Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~ 184 (301)
T 2qpq_A 130 QVTYGSCGN-GTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTA 184 (301)
T ss_dssp CCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEH
T ss_pred ceEEecCCC-CcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcH
Confidence 456666555 899998887654 3 34578999999999999999999999864
No 50
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=80.27 E-value=6 Score=37.58 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=46.5
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecC--CCcHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS--MADPRAQNALG 363 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~--~~d~~v~~al~ 363 (384)
+..|.+.-+|+||-..++-+.|+.+|+|+..+.+.-.... ..|+.-++++.. .+-..+++.++
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQS---------------GRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCC---------------CeeEEEEEEecCCCCCHHHHHHHHH
Confidence 4456777799999999999999999999999988842221 123333444432 23467777777
Q ss_pred HHHH
Q 016702 364 HLQE 367 (384)
Q Consensus 364 ~L~~ 367 (384)
.+.+
T Consensus 73 ~la~ 76 (286)
T 3n0v_A 73 ERSE 76 (286)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 7654
No 51
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=80.13 E-value=11 Score=37.81 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L 365 (384)
...|.+...|.||.|.++-++|+++|||+....++-... +-| --+|+++- ++.-++++++|
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~----------------~~y-~~~d~~~~--~~~~~~~~~~l 403 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE----------------VGY-LVMEADGV--GEASDAVLQEI 403 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS----------------CEE-EEEEECCC--HHHHHHHHHHH
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc----------------eEE-EEEEecCC--CCCcHHHHHHH
Confidence 577888889999999999999999999999888775322 334 35699722 13345677788
Q ss_pred HHhcCceE
Q 016702 366 QEFATFLR 373 (384)
Q Consensus 366 ~~~~~~vk 373 (384)
+..-.-+|
T Consensus 404 ~~~~~~~~ 411 (416)
T 3k5p_A 404 REIPGTIR 411 (416)
T ss_dssp HTSTTEEE
T ss_pred HhCCCEEE
Confidence 76655443
No 52
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=79.64 E-value=7.3 Score=34.04 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=29.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 016702 287 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 321 (384)
Q Consensus 287 tsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP 321 (384)
.-|.+..+|+||-+.++-+.|+.+|+|+..+.---
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~ 41 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM 41 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee
Confidence 44566679999999999999999999998765544
No 53
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=79.49 E-value=5.2 Score=38.05 Aligned_cols=67 Identities=12% Similarity=0.249 Sum_probs=45.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCC-CcHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASM-ADPRAQNALGH 364 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~-~d~~v~~al~~ 364 (384)
+..|.+.-+|+||-..++-+.++.+|+|+..+........ ..|+.-++++... +...+++.++.
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDS---------------SKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCC---CHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCC---------------CeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 4567777799999999999999999999999988743322 2233334554322 22467777777
Q ss_pred HHH
Q 016702 365 LQE 367 (384)
Q Consensus 365 L~~ 367 (384)
+.+
T Consensus 72 la~ 74 (287)
T 3nrb_A 72 VVE 74 (287)
T ss_dssp HHG
T ss_pred HHH
Confidence 654
No 54
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=79.29 E-value=31 Score=32.30 Aligned_cols=172 Identities=9% Similarity=-0.009 Sum_probs=93.9
Q ss_pred ceEEEEECCCCcHHHHHHHHHC------CCCcccCCCC-----HHHHHHHHHhCCCCeEEEeeec---------------
Q 016702 97 KVRISFKGLPGSFSEDAALKAY------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIEN--------------- 150 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f------~~~~~~~~~s-----~~~Vf~aV~~g~~d~gVvPiEN--------------- 150 (384)
.+|+++..|+|+..++++.++- |..++..+.+ -.+++++|..|.+|++++..-+
T Consensus 2 ~lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 81 (316)
T 2vpn_A 2 NWRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPY 81 (316)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCe
Confidence 4689999999998888876542 3344443333 4899999999999999886211
Q ss_pred ---c-c-------cc--cccc-cccccccCCeEEEEEEEEeeeeeeecCCC-CCcCCcc--EEEecHHHHHHHHHHHHhc
Q 016702 151 ---S-S-------SG--SIHR-NYDLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQL 213 (384)
Q Consensus 151 ---S-~-------~G--~V~~-tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqAl~QC~~fL~~~ 213 (384)
+ . .| .+.+ ..+.+.+.++++.+-......|.. .++. .+++|++ +|..-+-+. -.++++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~l 158 (316)
T 2vpn_A 82 LMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAF 158 (316)
T ss_dssp CSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHH
T ss_pred ecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHc
Confidence 0 0 01 1111 112233467888876655544433 4333 3566766 566533222 24788888
Q ss_pred CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccccCCCCCee-EEEEEee
Q 016702 214 GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNIT-RFLVLAR 274 (384)
Q Consensus 214 ~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~D~~~N~T-RF~vi~~ 274 (384)
|+..++.+- ++.-..+..+ .-.|+..+.......++.=+.+.+-+..+..+ -++++.+
T Consensus 159 Ga~pv~m~~-~Evy~ALq~G--~VDg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 159 GATPTPLPW-GEVYGGLQTG--IIDGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp TCEEEECCG-GGHHHHHHHT--SCSEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC--CcceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 987765532 3333334443 23455566555544455333444443333343 3444443
No 55
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=78.83 E-value=1.6 Score=39.02 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=55.4
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCC------CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc--cCCe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPK------CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL--RHRL 168 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~------~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~--~~~l 168 (384)
..+||+. .|+..+....+.++. .+++.+.+.++++++|.+|++|+.+..-.. .. .++. ..++
T Consensus 137 g~~v~v~--~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~-~~-------~~~~~~~~~~ 206 (259)
T 4dz1_A 137 KYSIGYP--RGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPV-YF-------TFKNKKKMPI 206 (259)
T ss_dssp GSCEEEE--TTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHH-HH-------HHHHTSCCCE
T ss_pred CCEEEEe--CCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHH-HH-------HHhccCCCce
Confidence 4589884 688777777777654 678889999999999999999999986331 11 1111 2346
Q ss_pred EEEEEEEEeeeeeeecCCC
Q 016702 169 HIVGEVQLAANFCLLALPG 187 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g 187 (384)
.+.....-+...+++.+++
T Consensus 207 ~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 207 ESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEETT
T ss_pred EeecccCCCceEEEEEeCC
Confidence 6666555566666666654
No 56
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=78.39 E-value=20 Score=33.40 Aligned_cols=155 Identities=9% Similarity=-0.023 Sum_probs=86.5
Q ss_pred ceEEEEECCCCcHHHHHHHHHC--------CCCcccCCC-----CHHHHHHHHHhCCCCeEEEeeecccccccc------
Q 016702 97 KVRISFKGLPGSFSEDAALKAY--------PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSSSGSIH------ 157 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f--------~~~~~~~~~-----s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~------ 157 (384)
.+|+++.-|+|+..+.++..+- |..++..++ +-.+++++|..|.+|++++..-+ ..|.+.
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 81 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSA-LGNEDPLFEIDS 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGG-GTTTCGGGGGGG
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhh-hhccCccccccc
Confidence 4789999999988787776532 233443333 34799999999999999886421 111110
Q ss_pred -------------------ccc-cccccCCeEEEEEEEEeeeeeeecCCC-CCcCCcc--EEEecHHHHHHHHHHHHhcC
Q 016702 158 -------------------RNY-DLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLG 214 (384)
Q Consensus 158 -------------------~tl-DlL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqAl~QC~~fL~~~~ 214 (384)
+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... -..+++..|
T Consensus 82 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 157 (301)
T 2pfy_A 82 VPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMG 157 (301)
T ss_dssp STTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcC
Confidence 001 12234678877654444433 444333 3556666 55542 222 256888889
Q ss_pred CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccc
Q 016702 215 VARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRI 259 (384)
Q Consensus 215 ~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I 259 (384)
+..++.+ .++.-..+..+ .-.|+..+.......++.=+.+.+
T Consensus 158 a~pv~~~-~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~k~~ 199 (301)
T 2pfy_A 158 AVPTTVQ-TPEVPQAFSTG--VIDAMLTSPATGVDSQAWDYVKYY 199 (301)
T ss_dssp SEEEECC-GGGHHHHHHTT--SCSBEEECHHHHHHTTGGGTCCEE
T ss_pred Ccceecc-HHHHHHHHhcc--eeeeEecCccccccccHHHHhhhh
Confidence 8777653 34444444443 234556666555555553333333
No 57
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=77.82 E-value=8 Score=32.72 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=49.9
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (384)
..+|++. .|+..+....+ .+.+++.+.+..+++++|.+|++|+.+.+-.. ....+. ......+.+.+...-
T Consensus 112 g~~i~~~--~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 182 (228)
T 2pyy_A 112 GKVVATT--AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPV-LLFYAA----NEGKGKVEIVGSILR 182 (228)
T ss_dssp TCEEEEE--TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHH-HHHHHH----TTTTTTEEEEEEEEE
T ss_pred CCeEEEE--cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHH-HHHHHH----hCCCCcEEEeccccc
Confidence 4688884 56665554443 24567888999999999999999999987431 111111 111125666666544
Q ss_pred eeeeeeecCC
Q 016702 177 AANFCLLALP 186 (384)
Q Consensus 177 ~I~h~Ll~~~ 186 (384)
+....++.++
T Consensus 183 ~~~~~~~~~~ 192 (228)
T 2pyy_A 183 EESYGIILPN 192 (228)
T ss_dssp EEEECCEECT
T ss_pred ceeEEEEEeC
Confidence 4455565554
No 58
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=77.25 E-value=3.4 Score=36.31 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=39.0
Q ss_pred ceEEEEECCCCcHHHHHHHHH-CCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKA-YPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~-f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+||+ +.|+..+....++ ++..+++.+.+.++++++|.+|++|+++..
T Consensus 124 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 124 DAKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp TCCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred CceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 457887 5788777665554 445678889999999999999999999886
No 59
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=76.91 E-value=3 Score=37.37 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=40.5
Q ss_pred ceEEEEECCCCcHHHHHHHHHCC-CCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAYP-KCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+|++. .|+..+....+.++ ..+++.+.+..+++++|.+|++|+++.+-
T Consensus 147 g~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~ 197 (272)
T 2pvu_A 147 GKTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDN 197 (272)
T ss_dssp TSCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeCH
Confidence 3578885 57777776676666 56778889999999999999999999863
No 60
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=76.58 E-value=29 Score=31.98 Aligned_cols=133 Identities=16% Similarity=0.060 Sum_probs=75.4
Q ss_pred CCCCceEEEEECCCCcHHHHHHHHHC-----C-CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccC
Q 016702 93 NDGTKVRISFKGLPGSFSEDAALKAY-----P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH 166 (384)
Q Consensus 93 ~~~~~~~Va~LGP~GTfS~~AA~~~f-----~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~ 166 (384)
.-...++|++......|.-.-...+| | +++++++.+..++++++.+|++|++++..... ........
T Consensus 26 ~~~~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~-------~~~~~~g~ 98 (324)
T 3ksx_A 26 AEPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPP-------LFAQAAGA 98 (324)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHH-------HHHHHTTC
T ss_pred CCCCeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCHHH-------HHHHhcCC
Confidence 34567999998543222111112233 2 25778888999999999999999998743211 11111234
Q ss_pred CeEEEEEEEE-eeeeeeecCCCC---CcCCcc--EEEecHHH--HHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhc
Q 016702 167 RLHIVGEVQL-AANFCLLALPGI---KADQLK--RVLSHPQA--LASSDIVLTQLGV-----ARENVDDTASAAQYVASN 233 (384)
Q Consensus 167 ~l~I~gEi~l-~I~h~Ll~~~g~---~l~~I~--~VySHpqA--l~QC~~fL~~~~~-----~~i~~~STA~AA~~v~~~ 233 (384)
++.+++-... +-...++++++. +++|++ +|...+-. ...-..+|.+.++ +.+.. +.+++...+..+
T Consensus 99 ~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G 177 (324)
T 3ksx_A 99 DLLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG 177 (324)
T ss_dssp CEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT
T ss_pred CEEEEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC
Confidence 6777665432 223566666542 345553 56554322 2234567777653 44444 667777777664
No 61
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=75.76 E-value=38 Score=31.54 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=73.6
Q ss_pred CCceEEEEECCCCcHHHHHHHH---HCCC----CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCC
Q 016702 95 GTKVRISFKGLPGSFSEDAALK---AYPK----CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHR 167 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS~~AA~~---~f~~----~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~ 167 (384)
..+++|++..-.+...-..|.+ +|.. +++++..+..++++++.+|++|+++......+.. .-...+
T Consensus 51 ~~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-------~~~g~~ 123 (341)
T 3un6_A 51 QQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKS-------KQKGSN 123 (341)
T ss_dssp CCEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHH-------HHTTCC
T ss_pred CceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHH-------HHCCCC
Confidence 3568999874322233333433 5532 5788999999999999999999998765422111 011235
Q ss_pred eEEEEEEEEeeeeeeecCCCC---CcCCc---cEEEecHH-H--HHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhc
Q 016702 168 LHIVGEVQLAANFCLLALPGI---KADQL---KRVLSHPQ-A--LASSDIVLTQLGV-----ARENVDDTASAAQYVASN 233 (384)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~---~l~~I---~~VySHpq-A--l~QC~~fL~~~~~-----~~i~~~STA~AA~~v~~~ 233 (384)
+.+++-.. +-...++++++. +++|+ ++|..... . ....+.+|.+.++ +.+.. +.+++...+..+
T Consensus 124 ~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G 201 (341)
T 3un6_A 124 IKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH 201 (341)
T ss_dssp CEEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT
T ss_pred eEEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC
Confidence 55555422 223456666542 35666 46654321 1 1223567877654 34444 455666666654
No 62
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=75.11 E-value=11 Score=37.45 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L 365 (384)
...|++.-.|+||.+.++-+.|.++|||+......- ++ ..-+..+|++... +.-++++++|
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g----------------~~A~~vidvD~~~--~~~~~~l~~l 391 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SA----------------QMGYVVIDIEADE--DVAEKALQAM 391 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CS----------------SEEEEEEEEECCH--HHHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CC----------------CEEEEEEEcCCCC--CCCHHHHHHH
Confidence 455888888999999999999999999998766543 32 1235567998741 1234677888
Q ss_pred HHh
Q 016702 366 QEF 368 (384)
Q Consensus 366 ~~~ 368 (384)
++.
T Consensus 392 ~~i 394 (404)
T 1sc6_A 392 KAI 394 (404)
T ss_dssp HTS
T ss_pred hcC
Confidence 764
No 63
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=74.33 E-value=1.7 Score=38.74 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=57.6
Q ss_pred ceEEEEECCCCcHHHHHHHHH-------CCCCcccCCCCHHHHHHHHHhCCCCeEEEeeecccccccccccccccc-CCe
Q 016702 97 KVRISFKGLPGSFSEDAALKA-------YPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR-HRL 168 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~-------f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~-~~l 168 (384)
..+||+. .|+..+....++ +++.+++.+.+.++++++|.+|++|+.+..-.. . ...+..... .++
T Consensus 127 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-~----~~~~~~~~~~~~l 199 (268)
T 3hv1_A 127 GKTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVY-A----NYYLEKSGVLDQY 199 (268)
T ss_dssp TCCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHH-H----HHHHHHTTCGGGE
T ss_pred CCEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHH-H----HHHHHhCCCCCce
Confidence 4688885 566666443322 223567889999999999999999999986431 1 111111111 346
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 016702 169 HIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I~~VySHpqAl~QC~~fL~~ 212 (384)
.+.+...-+...+++.+++ +|+-..+-.++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 232 (268)
T 3hv1_A 200 NVMPAGYEGESFAVGARKV-----------DKTLIKKINQGFET 232 (268)
T ss_dssp EEEECSSCCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred EECCCCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 6665544444455555442 45555555666554
No 64
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=73.09 E-value=12 Score=38.21 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=49.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeee-eeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIES-RPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGH 364 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIES-RP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~ 364 (384)
-..|++..+|+||.+.++...+.++|||+..+.- |..++ .+-+..|+++....++ +.+.|++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~----------------~~a~~~i~vd~~~~~~-~l~~l~~ 516 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG----------------PGATILLRLDQDVPDD-VRTAIAA 516 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS----------------SCEEEEEEESSCCCHH-HHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC----------------CEEEEEEEECCCCCHH-HHHHHhc
Confidence 4668888899999999999999999999998864 43322 3467888998876544 3333444
Q ss_pred HHHhcCceEE
Q 016702 365 LQEFATFLRV 374 (384)
Q Consensus 365 L~~~~~~vkv 374 (384)
+... ..+++
T Consensus 517 ~~~i-~~v~~ 525 (529)
T 1ygy_A 517 AVDA-YKLEV 525 (529)
T ss_dssp HHTE-EEEEE
T ss_pred CCCc-cEEEE
Confidence 4332 33444
No 65
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=72.37 E-value=11 Score=33.16 Aligned_cols=35 Identities=6% Similarity=-0.052 Sum_probs=29.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 016702 287 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 321 (384)
Q Consensus 287 tsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP 321 (384)
.-|.+..+|+||-..++-+.++.+|+|+....---
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~ 40 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC 40 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE
Confidence 34556679999999999999999999999665553
No 66
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=72.28 E-value=64 Score=30.18 Aligned_cols=173 Identities=8% Similarity=-0.042 Sum_probs=95.8
Q ss_pred ceEEEEECCCCcHHHHHHHHHC--------CCCcccCCC-----CHHHHHHHHHhCCCCeEEEeeecc------------
Q 016702 97 KVRISFKGLPGSFSEDAALKAY--------PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENS------------ 151 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f--------~~~~~~~~~-----s~~~Vf~aV~~g~~d~gVvPiENS------------ 151 (384)
.+|+++.-|+|+..+.++..+- |..++..++ +-.+++++|..|.+|++++..-+-
T Consensus 4 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~l 83 (312)
T 2xwv_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (312)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcC
Confidence 5789998888988888876532 223333332 358999999999999999864210
Q ss_pred -------------c-ccccc-cccccc-ccCCeEEEEEEEEeeeeeeecCCCCCcCCcc--EEEecHHHHHHHHHHHHhc
Q 016702 152 -------------S-SGSIH-RNYDLL-LRHRLHIVGEVQLAANFCLLALPGIKADQLK--RVLSHPQALASSDIVLTQL 213 (384)
Q Consensus 152 -------------~-~G~V~-~tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~--~VySHpqAl~QC~~fL~~~ 213 (384)
. +|.+. +.++-+ .+.++++.+-......|....++=.+++|++ +|..-+-. -...+++..
T Consensus 84 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~al 161 (312)
T 2xwv_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAA--TNLAYAKYV 161 (312)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCH--HHHHHHHHH
T ss_pred CcccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceeeecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHHc
Confidence 0 01111 011111 2357888887777766543323323566766 56554422 235788888
Q ss_pred CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccccCCCCCeeE-EEEEee
Q 016702 214 GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITR-FLVLAR 274 (384)
Q Consensus 214 ~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~D~~~N~TR-F~vi~~ 274 (384)
|+..++.+- ++....+..+ .-.|+..+.......++.=+.+.+....+..+- ++++++
T Consensus 162 Ga~pv~m~~-~Evy~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 162 GASPTPMAF-SEVYLALQTN--AVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp TCEEEECCG-GGHHHHHHTT--SSSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC--CcceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 987665533 3333334443 234566555555445554444455443344443 344443
No 67
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=72.20 E-value=12 Score=35.73 Aligned_cols=161 Identities=13% Similarity=0.020 Sum_probs=88.8
Q ss_pred CCCceEEEEECCCCcHHHHHHHHHC--------CCCcccCCC-----CHHHHHHHHHhCCCCeEEEeeecc---------
Q 016702 94 DGTKVRISFKGLPGSFSEDAALKAY--------PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENS--------- 151 (384)
Q Consensus 94 ~~~~~~Va~LGP~GTfS~~AA~~~f--------~~~~~~~~~-----s~~~Vf~aV~~g~~d~gVvPiENS--------- 151 (384)
-+..+|+++..|+|+..+.++.++- |..++..+. +-.+++++|..|.+|++++..-..
T Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~ 86 (327)
T 2hpg_A 7 AKYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGV 86 (327)
T ss_dssp CSEEEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGG
T ss_pred cceEEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHh
Confidence 3456899999999987777765531 223333332 347899999999999998864210
Q ss_pred -------------------------ccccccc-ccccccc-CCeEEEEE-EEEeeeeeeecCCCCCcCCcc--EEEecHH
Q 016702 152 -------------------------SSGSIHR-NYDLLLR-HRLHIVGE-VQLAANFCLLALPGIKADQLK--RVLSHPQ 201 (384)
Q Consensus 152 -------------------------~~G~V~~-tlDlL~~-~~l~I~gE-i~l~I~h~Ll~~~g~~l~~I~--~VySHpq 201 (384)
..|.+.. ..+.+.+ .++++.+- ......+....++=.+++|++ +|..-+-
T Consensus 87 ~~lPfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~~~~~~pI~s~~DLkG~KiRv~~~ 166 (327)
T 2hpg_A 87 MNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVTNKPIRKPEDLNGLRIRTPGA 166 (327)
T ss_dssp GGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEESSCCSSGGGGTTCEEECCSS
T ss_pred ccCCeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCcceeEecCCCCCCHHHHCCCEEEeCCC
Confidence 1121111 1112233 67888776 444444333323323566776 6665432
Q ss_pred HHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccc
Q 016702 202 ALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRI 259 (384)
Q Consensus 202 Al~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I 259 (384)
+ -...+++..|+..++.+ .++....+..+ .-.|+..+.......++.=+.+.+
T Consensus 167 ~--~~~~~~~alGa~pv~m~-~~Evy~ALq~G--~VDg~~~p~~~~~~~~~~ev~ky~ 219 (327)
T 2hpg_A 167 P--AWQESIRSLGAIPVAVN-FGEIYTAVQTR--AVDGAELTYANVYNGGLYEVLKYM 219 (327)
T ss_dssp H--HHHHHHHHHTSEEECCC-GGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEE
T ss_pred H--HHHHHHHHcCCEeeecC-HHHHHHHHHcC--CeeEEECCHHHHHHcChhhhccEE
Confidence 2 23578888898766543 33444444443 234666666554444553333333
No 68
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=70.91 E-value=5.7 Score=33.91 Aligned_cols=48 Identities=4% Similarity=0.010 Sum_probs=37.4
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+|++. .|+..+....+. +.+++.+.+..+++++|.+|++|+.+.+-
T Consensus 116 g~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 163 (233)
T 1ii5_A 116 NKEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDR 163 (233)
T ss_dssp TCEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeCH
Confidence 4688884 577666554443 46778899999999999999999999863
No 69
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=69.19 E-value=9.9 Score=38.38 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=44.4
Q ss_pred eEEE--EEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHH
Q 016702 286 KTSI--VFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALG 363 (384)
Q Consensus 286 Ktsl--~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~ 363 (384)
.+.. -|.+.|+||.|.++-.+|.++||++..+-.+|..... + .- -+.++ .-...+.+++++++
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~---------~---~~-~~v~~--th~~~e~~~~~~~~ 421 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGE---------E---QV-DIILL--THVTLEKNVNAAIA 421 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------------------CE-EEEEE--ECSEEHHHHHHHHH
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCC---------C---Cc-eEEEE--eccCCHHHHHHHHH
Confidence 4544 4566899999999999999999999988777643110 0 01 12222 22235688999999
Q ss_pred HHHHh
Q 016702 364 HLQEF 368 (384)
Q Consensus 364 ~L~~~ 368 (384)
+|+..
T Consensus 422 ~~~~~ 426 (444)
T 3mtj_A 422 KIEAL 426 (444)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 99864
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=68.43 E-value=8.7 Score=34.81 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=38.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+|++ +.|+..+....++ +.+++++.+..+++.+|.+|++|+++++-
T Consensus 164 G~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~ 211 (283)
T 2yln_A 164 GVKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDE 211 (283)
T ss_dssp TSEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEH
T ss_pred CCEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecH
Confidence 468987 7787776655543 46788899999999999999999999863
No 71
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=67.36 E-value=16 Score=35.47 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=30.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 016702 288 SIVFTLDEGPGVLFKALAVFALREINLTKIESRPQ 322 (384)
Q Consensus 288 sl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~ 322 (384)
.|.++-+|+||-...+-+.++.+|+|+..+.....
T Consensus 14 ~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~ 48 (415)
T 3p96_A 14 LITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI 48 (415)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE
Confidence 44555699999999999999999999999988753
No 72
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=67.13 E-value=10 Score=32.73 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=64.5
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc--E
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 195 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~ 195 (384)
.+++++ ++.++++++.+|++|+++.++--+-+..- .++ ...+ +......++++++. +++|++ +
T Consensus 45 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~--~~~--fs~p-------~~~~~~~~~~~~~~~~~~~~dL~g~~ 112 (237)
T 3kzg_A 45 CTFEAY-IFDDLFPALKNREVDLVIASMIITDERKK--HFI--FSLP-------YMESNSQYITTVDSKISTFDDLHGKK 112 (237)
T ss_dssp EEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGGG--TCE--ECCC-------SBCCEEEEEEETTCSCCSGGGGTTCE
T ss_pred eEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHhc--cce--eeee-------eeecceEEEEECCCCCCCHHHhCCCE
Confidence 567776 68999999999999987654332221110 000 0011 12233445554442 233332 3
Q ss_pred EEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHc
Q 016702 196 VLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (384)
Q Consensus 196 VySHpqAl~QC~~fL~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~y 250 (384)
|.... .-.....++... +...+.+.|..++.+++..+ .-.|++.....+..+
T Consensus 113 i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 113 IGVRK-GTPYARQVLSENRNNQVIFYELIQDMLLGLSNN--QVDASLMDYEAAKYW 165 (237)
T ss_dssp EEEET-TSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHHH
T ss_pred EEEec-CCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcC--CCCEEEeCcHHHHHH
Confidence 43322 222233344444 56788899999999999886 356777777666543
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=65.63 E-value=5.1 Score=34.85 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=37.3
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCC----CcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPK----CETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~----~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+|++. .|+..+....+++.. .+.+++.+..+++++|.+|++|+++.+-
T Consensus 148 g~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 201 (259)
T 2v25_A 148 GANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDK 201 (259)
T ss_dssp TCEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CCEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEecH
Confidence 4578885 566666555554422 3677899999999999999999999853
No 74
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=65.01 E-value=42 Score=30.36 Aligned_cols=139 Identities=15% Similarity=0.020 Sum_probs=72.8
Q ss_pred CceEEEEECCCCcHHHHHH-----HHHCCC--CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCe
Q 016702 96 TKVRISFKGLPGSFSEDAA-----LKAYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS~~AA-----~~~f~~--~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l 168 (384)
..++|++......| ..|. .+.+++ ++++.+.+..++++++.+|++|+++....... ...-...++
T Consensus 3 ~~lrig~~~~~~~~-~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~-------~~~~~g~~~ 74 (308)
T 2x26_A 3 EALRIGYQKGSIGM-VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPI-------FAQAAGADL 74 (308)
T ss_dssp SEEEEEECTTCHHH-HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHH-------HHHHTTCCE
T ss_pred eEEEEEccCCchHH-HHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCcHHH-------HHHhcCCCe
Confidence 46789987532212 2221 122333 56778888889999999999999986432110 000012345
Q ss_pred EEEEEEE-EeeeeeeecCCCC---CcCCcc--EEEecHHH--HHHHHHHHHhcCCe---E-EecCCHHHHHHHHHhcCCC
Q 016702 169 HIVGEVQ-LAANFCLLALPGI---KADQLK--RVLSHPQA--LASSDIVLTQLGVA---R-ENVDDTASAAQYVASNGLR 236 (384)
Q Consensus 169 ~I~gEi~-l~I~h~Ll~~~g~---~l~~I~--~VySHpqA--l~QC~~fL~~~~~~---~-i~~~STA~AA~~v~~~~~~ 236 (384)
.+++... .+....++++++. +++|++ +|...+-. ......+|.+.++. . ....+..++...+..+.
T Consensus 75 ~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~-- 152 (308)
T 2x26_A 75 VYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN-- 152 (308)
T ss_dssp EEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS--
T ss_pred EEEEEecCCCCceEEEEeCCCCCCCHHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC--
Confidence 5544332 1234556665542 344543 55543321 23345677776542 2 12345667777776652
Q ss_pred CeEEEcCH
Q 016702 237 DAGAVASA 244 (384)
Q Consensus 237 ~~AAIas~ 244 (384)
-.|++...
T Consensus 153 vDa~~~~~ 160 (308)
T 2x26_A 153 VDAWAIWD 160 (308)
T ss_dssp SSEEEEET
T ss_pred CCEEEecc
Confidence 34555443
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=64.44 E-value=17 Score=33.48 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=73.0
Q ss_pred HCCC--CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEe---eeeeeecCCCCCcC
Q 016702 117 AYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLA---ANFCLLALPGIKAD 191 (384)
Q Consensus 117 ~f~~--~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~---I~h~Ll~~~g~~l~ 191 (384)
.|.+ .++.++++++..+.++.+|.+|++|+-.- .|-..+.+.++.++-++.-| -.|.|+.+++ ...
T Consensus 40 ~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~--------aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~ 110 (231)
T 2ozz_A 40 QFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRL--------AAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESG 110 (231)
T ss_dssp TTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGG
T ss_pred HhcCCcEEEEEccChHHHHHHHHcCCCCEEEEecc--------cchhhhcccCeEEEEEcCCCccccCeEEEEeCC-Ccc
Confidence 4543 57889999999999999999999998532 12222222344444444332 2366666654 345
Q ss_pred CccEEEecHHHHHHHHHHHHh---cCCeEEec-CCHHHHHHHHHhcCCCCeEEEc
Q 016702 192 QLKRVLSHPQALASSDIVLTQ---LGVARENV-DDTASAAQYVASNGLRDAGAVA 242 (384)
Q Consensus 192 ~I~~VySHpqAl~QC~~fL~~---~~~~~i~~-~STA~AA~~v~~~~~~~~AAIa 242 (384)
.|++|--.+-...|+ ||.+ .+.+...+ .+.+++...+..+. -.|+|-
T Consensus 111 ~ikrVGvd~gS~dq~--~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~--IDA~Iw 161 (231)
T 2ozz_A 111 NVKRVGLDSRSADQK--IMTDVFFGDSDVERVDLSYHESLQRIVKGD--VDAVIW 161 (231)
T ss_dssp GCCEEEECTTCHHHH--HHHHHHHTTSCCEEEECCHHHHHHHHHHTS--CCEEEE
T ss_pred ccEEEEecCCChhHH--HHHhhhcCCCeEEEEECCHHHHHHHHHcCC--ccEEEE
Confidence 679999888877776 3333 35555555 67888888888763 456665
No 76
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=64.38 E-value=57 Score=30.39 Aligned_cols=115 Identities=14% Similarity=-0.015 Sum_probs=63.8
Q ss_pred Ccc--cCCCC-HHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc
Q 016702 121 CET--VPCDE-FEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK 194 (384)
Q Consensus 121 ~~~--~~~~s-~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~ 194 (384)
+++ ....+ ..++++++.+|++|+++......+. ..-...++.+++.....-...|+++++. +++|++
T Consensus 46 v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~-------~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DLk 118 (348)
T 3uif_A 46 VEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPII-------LNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDLK 118 (348)
T ss_dssp EEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHH-------HHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGGT
T ss_pred EEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHH-------HHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHcC
Confidence 566 55654 7889999999999999964331110 1111235666655444444556665542 345553
Q ss_pred --EEEecHH--HHHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhcCCCCeEEEcCHH
Q 016702 195 --RVLSHPQ--ALASSDIVLTQLGV-----ARENVDDTASAAQYVASNGLRDAGAVASAR 245 (384)
Q Consensus 195 --~VySHpq--Al~QC~~fL~~~~~-----~~i~~~STA~AA~~v~~~~~~~~AAIas~~ 245 (384)
+|...+- .......+|.+.++ +.+.. +.+++...+..+. -.|++....
T Consensus 119 Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~--vDa~~~~~~ 175 (348)
T 3uif_A 119 GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT--VDGFFSLFD 175 (348)
T ss_dssp TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS--SSEEEESTT
T ss_pred CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC--CCEEEechH
Confidence 5654322 22335677777653 34433 5666666666652 335554443
No 77
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=61.62 E-value=10 Score=32.50 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=28.3
Q ss_pred eEEEEEE-eCCCcchHHHHHHHHHhCCceeeeeee
Q 016702 286 KTSIVFT-LDEGPGVLFKALAVFALREINLTKIES 319 (384)
Q Consensus 286 Ktsl~f~-~~~~pGaL~~~L~~F~~~~INLtkIES 319 (384)
-+.|.+. ++++||.+.++++.|+++|||+-.|-+
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 3444443 789999999999999999999999865
No 78
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=61.30 E-value=67 Score=26.35 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=73.1
Q ss_pred CCCceEEEEECCCCcHH-HHHH---HHHCCCCcccC-CCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCe
Q 016702 94 DGTKVRISFKGLPGSFS-EDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (384)
Q Consensus 94 ~~~~~~Va~LGP~GTfS-~~AA---~~~f~~~~~~~-~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l 168 (384)
+.+..+||+...-+.+- -... .+.+++.++.. ..+..++.+.+.+|++|+|++.-.....+... ..|.+.++
T Consensus 2 ~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~---~~l~~~~~ 78 (219)
T 3jv9_A 2 LEGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVT---EPLYDEPF 78 (219)
T ss_dssp -CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCCTTEEE---EEEEEEEE
T ss_pred cCCcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCCCCeeE---EEeeeceE
Confidence 35677888864433321 1111 23456655433 34677899999999999999975422211111 11111111
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCc---cEEEecHH--HHHHHHHHHHh-----c--C-CeEEecCCHHHHHHHHHhcCC
Q 016702 169 HIVGEVQLAANFCLLALPGIKADQL---KRVLSHPQ--ALASSDIVLTQ-----L--G-VARENVDDTASAAQYVASNGL 235 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I---~~VySHpq--Al~QC~~fL~~-----~--~-~~~i~~~STA~AA~~v~~~~~ 235 (384)
.+ ..+-.|-|..+...+++++ .-|...+. -..+..+|+.+ . . .....++|...+.+++..+
T Consensus 79 ~~----v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g-- 152 (219)
T 3jv9_A 79 FV----IVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASG-- 152 (219)
T ss_dssp EE----EEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHT--
T ss_pred EE----EEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcC--
Confidence 11 2233344443333344444 34443321 22445555543 2 1 2235677777777787775
Q ss_pred CCeEEEcCHHHHH
Q 016702 236 RDAGAVASARAAE 248 (384)
Q Consensus 236 ~~~AAIas~~aA~ 248 (384)
...||.+...+.
T Consensus 153 -~gi~~~p~~~~~ 164 (219)
T 3jv9_A 153 -LAISVLPATALT 164 (219)
T ss_dssp -SCEEEEEGGGCC
T ss_pred -CcEEehhHHHHH
Confidence 356666665443
No 79
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=61.02 E-value=86 Score=27.50 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=72.8
Q ss_pred CCCceEEEEECCCCc-HHHHHH---HHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCe
Q 016702 94 DGTKVRISFKGLPGS-FSEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (384)
Q Consensus 94 ~~~~~~Va~LGP~GT-fS~~AA---~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l 168 (384)
..+..+|++...-+. +--... .+.++++++. -..+-+++.+.+.+|++|+|++.......+... ..|.+.++
T Consensus 89 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~ 165 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEI---VNIAQEDL 165 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEE---EEEEEEEE
T ss_pred CCceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceE---EEEeeccE
Confidence 345678887544332 222222 2335765442 234567899999999999999865432211111 11111122
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCc---cEEEec----HHHHHHHHHHHHhcCC--e-EEecCCHHHHHHHHHhcCCCCe
Q 016702 169 HIVGEVQLAANFCLLALPGIKADQL---KRVLSH----PQALASSDIVLTQLGV--A-RENVDDTASAAQYVASNGLRDA 238 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I---~~VySH----pqAl~QC~~fL~~~~~--~-~i~~~STA~AA~~v~~~~~~~~ 238 (384)
.+ ..+-.|-|...+..+++|+ .-|... +..-....+|+.+.+. . ...++|...+.+++..+ ..
T Consensus 166 ~~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~G 238 (294)
T 1ixc_A 166 YL----AVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG---AA 238 (294)
T ss_dssp EE----EEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT---SC
T ss_pred EE----EEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC---Ce
Confidence 11 2233444433222333443 344433 1223456677777654 2 34566777777777764 34
Q ss_pred EEEcCHHHH
Q 016702 239 GAVASARAA 247 (384)
Q Consensus 239 AAIas~~aA 247 (384)
.|+.+...+
T Consensus 239 ia~lp~~~~ 247 (294)
T 1ixc_A 239 SSIVPASVA 247 (294)
T ss_dssp BEEEEHHHH
T ss_pred EEEechhhh
Confidence 566666553
No 80
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=60.61 E-value=19 Score=31.10 Aligned_cols=111 Identities=7% Similarity=0.032 Sum_probs=67.7
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC--CCcCCccEEE
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG--IKADQLKRVL 197 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g--~~l~~I~~Vy 197 (384)
..++++. ++.+++.++.+|++|.++.++-. |-+. +..+... .-++.....++.+++ .++.. +|.
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~r--~~~~~fs-~p~~~~~~~~~~~~~~~~dL~g--~ig 110 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSI--------TDER--DEVIDFT-QNYIPPTASSYVATSDGADLSG--IVA 110 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTSEEE-EEEECCCEEEEEESSTTCCTTS--EEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcC--------CHHH--HhhcCcc-cccccCCeEEEEECCChHHhCC--CEE
Confidence 4567775 89999999999999986644321 1111 1122222 234445556666554 23444 333
Q ss_pred ecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHH
Q 016702 198 SHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (384)
Q Consensus 198 SHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~ 248 (384)
...- .. -..||.+.++..+.+.|..++.+++..+ .-.|+|+....+.
T Consensus 111 v~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 157 (232)
T 3i6v_A 111 AQTA-TI-QAGYIAESGATLVEFATPEETIAAVRNG--EADAVFADRDYLV 157 (232)
T ss_dssp EETT-SH-HHHHHHHSSSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EecC-ch-HHHHHHhcCCeEEEeCCHHHHHHHHHcC--CcCEEEEChHHHH
Confidence 3221 11 2456666688888999999999999886 3567787776664
No 81
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=60.28 E-value=54 Score=28.88 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=65.1
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCcc-
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~- 194 (384)
..++++..++.++++++.+|++|... ++-.+.+-. . .+....++ ......++++++. +++|++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r~--~--~~~fs~p~-------~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSARE--S--FLSFSRPY-------VRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGGT--T--TEEECSCS-------EEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChhhh--c--ceEechhh-------ccCceEEEEECCCCCCCCHHHHCC
Confidence 36778888999999999999999843 443222110 0 00001111 2223445554431 233332
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHH
Q 016702 195 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (384)
Q Consensus 195 -~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~ 248 (384)
+|....-. . -..||.+. ++..+.+.|..++.+++..+ .-.|+|.....+.
T Consensus 140 ~~i~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~G--rvDa~i~~~~~~~ 192 (267)
T 3mpk_A 140 RTVALVRNS-A-AIPLLQRRYPQAKVVTADNPSEAMLMVANG--QADAVVQTQISAS 192 (267)
T ss_dssp CEEEEETTC-T-HHHHHHHHCTTSEEEEESSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred CEEEEeCCc-h-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 33332211 1 23466653 67888999999999999886 3567787766554
No 82
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=60.15 E-value=24 Score=30.16 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=37.4
Q ss_pred ceEEEEECCCCcHHHHHHHH---HCCC--Cccc-CCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALK---AYPK--CETV-PCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~---~f~~--~~~~-~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+||+ +.|+..+....+ .++. .++. ...+.++++++|.+|++|+.+..
T Consensus 115 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 169 (246)
T 4eq9_A 115 GKSTEV--VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFD 169 (246)
T ss_dssp TCEEEE--CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEE--ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEec
Confidence 468988 578877766665 4553 3444 34699999999999999999986
No 83
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=59.90 E-value=57 Score=31.08 Aligned_cols=133 Identities=14% Similarity=0.021 Sum_probs=78.3
Q ss_pred CCceEEEEECCCCcHHHHHHHHHC--------CCCcccCCC-----CHHHHHHHHHhCCCCeEEEeeecccccc------
Q 016702 95 GTKVRISFKGLPGSFSEDAALKAY--------PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSSSGS------ 155 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS~~AA~~~f--------~~~~~~~~~-----s~~~Vf~aV~~g~~d~gVvPiENS~~G~------ 155 (384)
+..+|+++..|+|+..+.++..+. |.+++..+. +..+++++|..|.+|++++..-.. .+.
T Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~ 111 (361)
T 2zzv_A 33 RYRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYW-AGRMPVTAF 111 (361)
T ss_dssp CEEEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGG-TTTCGGGGG
T ss_pred ceEEEEeccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccc-cccCcHHHH
Confidence 346899999999977777665431 224433332 568999999999999998864221 111
Q ss_pred ---ccccc-------------------c-ccccCCeEEEEEEEEeeeeeeecCCC-CCcCCcc--EEEecHHHHHHHHHH
Q 016702 156 ---IHRNY-------------------D-LLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIV 209 (384)
Q Consensus 156 ---V~~tl-------------------D-lL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqAl~QC~~f 209 (384)
....+ + .+.+.++++.+ ......+.+..+++ .+++|++ +|..-. +. ...+
T Consensus 112 ~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~~--~~~~ 187 (361)
T 2zzv_A 112 LSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-GM--IAEV 187 (361)
T ss_dssp SSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-HH--HHHH
T ss_pred HhcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-HH--HHHH
Confidence 00100 0 12345788887 65544454444333 3567776 555443 22 3578
Q ss_pred HHhcCCeEEecCCHHHHHHHHHhc
Q 016702 210 LTQLGVARENVDDTASAAQYVASN 233 (384)
Q Consensus 210 L~~~~~~~i~~~STA~AA~~v~~~ 233 (384)
++..|+..++. +.++....+..+
T Consensus 188 ~~~lGa~pv~~-~~~e~~~ALq~G 210 (361)
T 2zzv_A 188 FAAAGASTVLL-PGGEVYPALERG 210 (361)
T ss_dssp HHHTTCEEECC-CGGGHHHHHHTT
T ss_pred HHHcCCeeeec-ChHHHHHHHHcC
Confidence 88888877665 445555555554
No 84
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=57.99 E-value=11 Score=35.94 Aligned_cols=51 Identities=8% Similarity=-0.151 Sum_probs=40.9
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C-CCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
+.+++..|+ ||.+|.++..++ | +...+|+....+++.+|..|++|.++...
T Consensus 143 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 143 KYSYGSSGT-CGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp TCEEEESCT-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEH
T ss_pred cEEEeCCCC-CcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcH
Confidence 456666655 999999887654 3 34578999999999999999999999865
No 85
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=57.79 E-value=44 Score=27.85 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=64.4
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCcc--
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK-- 194 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~-- 194 (384)
.++++. ++.++++++++|++|.++-++--+-+.. . ......+ +......++++++. +++|++
T Consensus 43 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~--~--~~~~s~p-------~~~~~~~l~~~~~~~~~~~~~dL~g~ 110 (227)
T 3tql_A 43 CTISNQ-PWDSLIPSLKLGKFDALFGGMNITTARQ--K--EVDFTDP-------YYTNSVSFIADKNTPLTLSKQGLKGK 110 (227)
T ss_dssp EEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTGG--G--TEEECSC-------SBCCEEEEEEETTSCCCCSTTTTTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhHH--h--heecccc-------eeccceEEEEeCCCCCCCCHHHhCCC
Confidence 567775 7999999999999998764332111110 0 0000111 11223445554432 344443
Q ss_pred EEEecHHHHHHHHHHHHhc--C-CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 RVLSHPQALASSDIVLTQL--G-VARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 ~VySHpqAl~QC~~fL~~~--~-~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....-... ..+|.+. . +..+.+.|..++.+++..+ .-.|++.....+..
T Consensus 111 ~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 111 IIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp EEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred EEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4433322211 3455553 3 7888899999999998875 45688888776654
No 86
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=56.39 E-value=14 Score=37.98 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=50.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHH
Q 016702 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365 (384)
Q Consensus 286 Ktsl~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L 365 (384)
+..+.+.+|++||+|.++++.+. +-|+++++=|-+ .. .+-..+|.+|..-..+..+++++.|
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~--~~--------------~~~~~~~~~e~~~~~~~~~~~~~~l 399 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA--DA--------------KNACIFVGVRLSRGLEERKEILQML 399 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC--CS--------------SBCEEEEEEECSSTHHHHHHHHHHH
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc--CC--------------CeEEEEEEEEeCCcHHHHHHHHHHH
Confidence 56788899999999999999887 689999998832 11 2345567777543246788889888
Q ss_pred HHhcCce
Q 016702 366 QEFATFL 372 (384)
Q Consensus 366 ~~~~~~v 372 (384)
++..-.+
T Consensus 400 ~~~g~~~ 406 (514)
T 1tdj_A 400 NDGGYSV 406 (514)
T ss_dssp TSSSCEE
T ss_pred HhCCCCe
Confidence 8765433
No 87
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=56.14 E-value=11 Score=35.86 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=40.9
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C-CCcccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
+.+++..|+ ||-+|.++..+. | +...+|+....+++.++..|++|.++...
T Consensus 139 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 139 KISLANAGI-GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp GCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEH
T ss_pred ceEEeCCCC-CcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEech
Confidence 456666665 899999887654 3 34568999999999999999999999865
No 88
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=55.42 E-value=27 Score=30.55 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=39.9
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeeeeeCCC-CCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHH
Q 016702 292 TLDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQ 366 (384)
Q Consensus 292 ~~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~-~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~ 366 (384)
.++++||.+.++++.|+++|||+-.|..-.+.. . | .-...|.|+-+ +-+...++|+++.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~----------g---~~~isftv~~~---~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVED----------G---KTDITFTCSRD---VGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTT----------C---EEEEEEEEETT---THHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccC----------C---ccEEEEEEehh---HHHHHHHHHHHHH
Confidence 568999999999999999999999886432221 1 1 12467887642 1134556666654
No 89
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=54.86 E-value=91 Score=25.85 Aligned_cols=115 Identities=9% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC-------CCcCC
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-------IKADQ 192 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-------~~l~~ 192 (384)
+.++++++++.++++++.+|++|+++-++.-+.+- .. .+....++.- ....++.+++ .+++|
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r--~~--~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~d 109 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISITAER--EQ--NFDFSLPIFA-------SGLQIMVRNLESGTGDIRSIDD 109 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHH--HH--HSEECSCSEE-------EEEEEEEEC-----CCCCSGGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHH--Hc--cceecccchh-------cceEEEEECCccccCCcCCHHH
Confidence 46788888999999999999999986432211000 00 0111112221 1223333221 12333
Q ss_pred cc--EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 193 LK--RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 193 I~--~VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
++ +|....... -..||.++++..+.+.|..++.+++..+ .-.|++.....+..
T Consensus 110 L~g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~~~~~~ 164 (228)
T 2pyy_A 110 LPGKVVATTAGST--AATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDAPVLLF 164 (228)
T ss_dssp CTTCEEEEETTSH--HHHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred cCCCeEEEEcCcH--HHHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 32 343322211 3467877788888889999999999875 34577777665543
No 90
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=54.62 E-value=22 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=27.4
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 016702 292 TLDEGPGVLFKALAVFALREINLTKIESRPQ 322 (384)
Q Consensus 292 ~~~~~pGaL~~~L~~F~~~~INLtkIESRP~ 322 (384)
.++++||.+.++++.|+++|||+-.|-.-++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s 72 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVS 72 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccc
Confidence 5799999999999999999999999965443
No 91
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=54.33 E-value=35 Score=29.19 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE--eeeeeeecCCCC---CcCCcc
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL--AANFCLLALPGI---KADQLK 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l--~I~h~Ll~~~g~---~l~~I~ 194 (384)
+.+++++ ++.+++.++++|++|+++-++- .|-+. ...+.. .-+. .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMS--------ITPSR--LKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBB--------CCHHH--HTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCc--------CCHHH--Hhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 3677888 8999999999999998753221 11110 112222 3333 445566665442 344443
Q ss_pred --EEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHc
Q 016702 195 --RVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (384)
Q Consensus 195 --~VySHpqAl~QC~~fL~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~y 250 (384)
+|.... .... ..++.+. +...+.+.|..++.+++..+ .-.|+|+....+..+
T Consensus 118 g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQT-GTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHG--KSPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEET-TSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEEc-CcHH-HHHHHhCCCceEEEECCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 343322 2222 3455544 67788889999999999886 356888887766644
No 92
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=54.03 E-value=13 Score=34.15 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=37.9
Q ss_pred eEEEEECCCCcHHHHHHHHHC---C----CCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 98 VRISFKGLPGSFSEDAALKAY---P----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 98 ~~Va~LGP~GTfS~~AA~~~f---~----~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
.+|++.|+ ||-++.....++ | +.+++++.+..+++.++.+|++|.++++
T Consensus 139 k~i~~~~~-gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 139 RKIGVTAP-GSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp CEEEESST-TSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CEEEECCC-CcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 58998764 777776555443 3 2567888888999999999999999986
No 93
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=53.85 E-value=12 Score=31.85 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=38.7
Q ss_pred CCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHH
Q 016702 294 DEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQE 367 (384)
Q Consensus 294 ~~~pGaL~~~L~~F~~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~ 367 (384)
++.||.+.++++.|+++|||+-.|-+-+ -...|.|+= . + ..++++++|++
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~-------------------~~Isf~v~~-~---~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE-------------------VGVSLTIDN-D---K-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS-------------------SEEEEEESC-C---T-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC-------------------CEEEEEECC-h---H-HHHHHHHHHhc
Confidence 5789999999999999999999887532 246788872 1 2 56778888875
No 94
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=52.72 E-value=70 Score=26.38 Aligned_cols=146 Identities=17% Similarity=0.080 Sum_probs=69.9
Q ss_pred CCCceEEEEECCCCcH-HHHHH---HHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCe
Q 016702 94 DGTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (384)
Q Consensus 94 ~~~~~~Va~LGP~GTf-S~~AA---~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l 168 (384)
..+..+||+...-+.+ --... .+.+++.++. ...+..++.+.+.+|++|+|++.-.....|... ..|.+.++
T Consensus 6 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~---~~l~~~~~ 82 (222)
T 4ab5_A 6 EAGELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNGISF---QPLFAYEM 82 (222)
T ss_dssp TTEEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCTTEEE---EEEEEEEE
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcCCeEE---EEeecCcE
Confidence 3456777765433332 11111 2235664432 223446789999999999999853321111110 01111111
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCc---cEEEec-H-HHHHHHHHHHHhcCCe--EEecCCHHHHHHHHHhcCCCCeEEE
Q 016702 169 HIVGEVQLAANFCLLALPGIKADQL---KRVLSH-P-QALASSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAV 241 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I---~~VySH-p-qAl~QC~~fL~~~~~~--~i~~~STA~AA~~v~~~~~~~~AAI 241 (384)
.+ ..+-.|-|...+..+++++ .-|.-. . ....+..+|+.+.+.. ...++|...+.++++.+ ...+|
T Consensus 83 ~~----v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~ 155 (222)
T 4ab5_A 83 VG----ICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR---RGIAA 155 (222)
T ss_dssp EE----EECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT---SCBEE
T ss_pred EE----EecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC---CeEEE
Confidence 11 1222232332222233333 333322 1 2224556666665432 56677777777777764 45667
Q ss_pred cCHHHHHH
Q 016702 242 ASARAAEI 249 (384)
Q Consensus 242 as~~aA~~ 249 (384)
.+...+..
T Consensus 156 ~p~~~~~~ 163 (222)
T 4ab5_A 156 LPYWTVMP 163 (222)
T ss_dssp EEHHHHHH
T ss_pred cchHHhHH
Confidence 77766543
No 95
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=51.55 E-value=63 Score=29.13 Aligned_cols=87 Identities=10% Similarity=-0.106 Sum_probs=51.2
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCc--cE
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQL--KR 195 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I--~~ 195 (384)
+++++..+..+.++++.+|++|+++......+. ..-...++.+++.....-...|+++++. +++|+ |+
T Consensus 36 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk~ 108 (302)
T 3ix1_A 36 VDIVFPTNPTDPIQLTASGAIPLALSYQPDVIL-------ARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLT 108 (302)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSEEEECHHHHHH-------HHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSE
T ss_pred EEEecCCCCchHHHHHHCCCCCEEecCHHHHHH-------HHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCCE
Confidence 577888877799999999999999874221111 1112245666666554434667765532 34444 35
Q ss_pred EEecHH--HHHHHHHHHHhcC
Q 016702 196 VLSHPQ--ALASSDIVLTQLG 214 (384)
Q Consensus 196 VySHpq--Al~QC~~fL~~~~ 214 (384)
|...+- .....+.+|.+++
T Consensus 109 i~~~~~~~~~~~~~~~l~~~G 129 (302)
T 3ix1_A 109 VGYPGIPVNEPILKTMVEAAG 129 (302)
T ss_dssp EEECSCTTHHHHHHHHHHHTT
T ss_pred EEeCCCcchHHHHHHHHHHcC
Confidence 544322 2233567777765
No 96
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=51.00 E-value=1.1e+02 Score=25.55 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=67.0
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCcc
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (384)
+.+++++.++.++++++.+|++|+++-++.-+.+-.-...++ ...++. .....++.+++ .+++|++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~--~s~p~~-------~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGIT--FTQPYF-------SSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEE--ECCCCE-------EEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCccccccceeE--Ecccee-------ecCeEEEEECCCCCCCCCHHHhC
Confidence 467888889999999999999999875543111100000111 111221 22233443332 1234433
Q ss_pred --EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 --RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 --~VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....-. . ...+|.+.+...+.+.|..++.+++..+ .-.|+|.....+..
T Consensus 116 g~~v~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRDT-T-AVDWANFYQADVRETNNLTAAITLLQKK--QVEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCeEEEECCc-c-HHHHHHHcCCCeEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 34332211 1 2346776678888889999999999876 35677777665543
No 97
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=50.86 E-value=1e+02 Score=27.77 Aligned_cols=146 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCceEEEEECCCCcHH------HHHHHHHCCC--CcccCCCCHHHHHHHHHhCCCCeEEEeeec---ccccccccccccc
Q 016702 95 GTKVRISFKGLPGSFS------EDAALKAYPK--CETVPCDEFEDTFKAVELWLADKAVLPIEN---SSSGSIHRNYDLL 163 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS------~~AA~~~f~~--~~~~~~~s~~~Vf~aV~~g~~d~gVvPiEN---S~~G~V~~tlDlL 163 (384)
+++.+|++..|.|+|. .+...+.+.+ +++.+..+-.+.+++|.+|++|++++.... ...|.....++-.
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGK 97 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTC
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCC
Q ss_pred ccCCeEEEEEEEEeeeeeeecCCCCCcCCccEEEecHHHH--------HHHHHHHHhcCCe-----EEecCCHHHHHHHH
Q 016702 164 LRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQAL--------ASSDIVLTQLGVA-----RENVDDTASAAQYV 230 (384)
Q Consensus 164 ~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~~VySHpqAl--------~QC~~fL~~~~~~-----~i~~~STA~AA~~v 230 (384)
...++..++ ....-...|+++++..+..+..+..++-+. .....++++.++. .+...+.+++...+
T Consensus 98 ~~~~~~~v~-~~~~~~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 176 (314)
T 1us5_A 98 PVKTIRALA-ALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLM 176 (314)
T ss_dssp CCTTEEEEE-EEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHH
T ss_pred Cccchhehh-hcCcceEEEEEECCCCCCcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHH
Q ss_pred HhcCCCCeEEEcC
Q 016702 231 ASNGLRDAGAVAS 243 (384)
Q Consensus 231 ~~~~~~~~AAIas 243 (384)
..+ .-.+++.+
T Consensus 177 ~~G--~vda~~~~ 187 (314)
T 1us5_A 177 QDK--RADALFYT 187 (314)
T ss_dssp HTT--SCSEEEEE
T ss_pred HcC--CccEEEEc
No 98
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=50.04 E-value=30 Score=29.10 Aligned_cols=144 Identities=11% Similarity=0.000 Sum_probs=70.8
Q ss_pred CCceEEEEECCCCcH-HHHHH---HHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeE
Q 016702 95 GTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLH 169 (384)
Q Consensus 95 ~~~~~Va~LGP~GTf-S~~AA---~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~ 169 (384)
.+..+||+...-+.+ --... .+.+++.++. ...+..++.+.+.+|++|+|++.-.....+... ..|.+..+.
T Consensus 10 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 86 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLED---DLLYYEEFL 86 (232)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE---EEEEEEEEE
T ss_pred ceeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCeEE---EEecccCEE
Confidence 456777775433222 11111 2235665443 235678999999999999999864322211110 111111111
Q ss_pred EEEEEEEeeeeeeecCCCCCcCCcc---EEEecHH--HHHHHHHHHHhcCC---e-EEecCCHHHHHHHHHhcCCCCeEE
Q 016702 170 IVGEVQLAANFCLLALPGIKADQLK---RVLSHPQ--ALASSDIVLTQLGV---A-RENVDDTASAAQYVASNGLRDAGA 240 (384)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I~---~VySHpq--Al~QC~~fL~~~~~---~-~i~~~STA~AA~~v~~~~~~~~AA 240 (384)
+ ..+-.|-|...+..+++++. -|...+. ...+...|+.+.+. . ...++|...+..+++.+ ...|
T Consensus 87 ~----v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~ 159 (232)
T 3ho7_A 87 G----YVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESG---QGIT 159 (232)
T ss_dssp E----EECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHTT---CCEE
T ss_pred E----EEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHcC---CcEE
Confidence 1 12223333333323333332 2222211 12345667766543 2 35667777777777764 4566
Q ss_pred EcCHHHHH
Q 016702 241 VASARAAE 248 (384)
Q Consensus 241 Ias~~aA~ 248 (384)
|.+...+.
T Consensus 160 ~~p~~~~~ 167 (232)
T 3ho7_A 160 FIPQLTVE 167 (232)
T ss_dssp EEEGGGGG
T ss_pred EecHHHhh
Confidence 66666554
No 99
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=48.48 E-value=1.1e+02 Score=26.32 Aligned_cols=114 Identities=10% Similarity=0.043 Sum_probs=68.4
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEE--eeeeeeecCCC----CCcCCc
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL--AANFCLLALPG----IKADQL 193 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l--~I~h~Ll~~~g----~~l~~I 193 (384)
+.++++. ++.++++++.+|++|+++.++.. +-+. ...+.. .-+. .....++.+++ .+++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~r--~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMSI--------TPSR--QKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCBC--------CHHH--HTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCcc--------CHhH--hcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 3577777 89999999999999987633221 1111 112222 3333 44456666543 134444
Q ss_pred c--EEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHc
Q 016702 194 K--RVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (384)
Q Consensus 194 ~--~VySHpqAl~QC~~fL~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~y 250 (384)
+ +|....-. .. ..++.+. +...+.+.|..++.+++..+ .-.|++.....+..+
T Consensus 138 ~g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTGT-YQ-EHYLLSQPGICVRSFDSTLEVIMEVRYG--KSPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETTS-HH-HHHHHTSTTCCEEEESCHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCCEEEEecCc-HH-HHHHHhCCCceEEecCCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 3 44433222 11 3455554 57788888999999998876 356778777766654
No 100
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=48.03 E-value=19 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=27.1
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeeee
Q 016702 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIES 319 (384)
Q Consensus 286 Ktsl~f-~~~~~pGaL~~~L~~F~~~~INLtkIES 319 (384)
-+.|.+ .++++||.+.++++.|+++|||+-.|-.
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 344433 3589999999999999999999988754
No 101
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=47.97 E-value=51 Score=28.49 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCcc
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (384)
+.++++. ++.++++++.+|++|+++.++..+.+. ...+.. ..-.......++.+++ .+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKTDER----------SKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCCHHH----------HTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCCHhH----------hhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 3677888 999999999999999976433211110 001111 1111222334444332 1344443
Q ss_pred --EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 --RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 --~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....-.. ...|+.+. +...+.+.|..++.+++..+ .-.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSG--QVDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcC--CCCEEEeChHHHHH
Confidence 444332221 24566653 57788899999999999886 35677777665543
No 102
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=47.83 E-value=32 Score=29.22 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.6
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeeee
Q 016702 292 TLDEGPGVLFKALAVFALREINLTKIESR 320 (384)
Q Consensus 292 ~~~~~pGaL~~~L~~F~~~~INLtkIESR 320 (384)
..+++||.+.++++.|+++|||+-.|-.-
T Consensus 23 g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 23 GIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 35889999999999999999999988653
No 103
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=47.80 E-value=1.5e+02 Score=26.43 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=71.7
Q ss_pred ceEEEEECCCCc-HHHHHH---HHHCCCCcccC-CCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEE
Q 016702 97 KVRISFKGLPGS-FSEDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIV 171 (384)
Q Consensus 97 ~~~Va~LGP~GT-fS~~AA---~~~f~~~~~~~-~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~ 171 (384)
..+|++...-+. +--... .+.++++++.. ..+..++.+.+.+|++|+|++.......+... ..|.+.++.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~-- 165 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKH---SLLRNERLM-- 165 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEE---EEEEEEEEE--
T ss_pred eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceE---EEeecceEE--
Confidence 677887543332 111221 22356655432 34578999999999999999864322111111 111111221
Q ss_pred EEEEEeeeeeeec-CCC-CCcCCc---cEEEecH----HHHHHHHHHHHhcCC--e-EEecCCHHHHHHHHHhcCCCCeE
Q 016702 172 GEVQLAANFCLLA-LPG-IKADQL---KRVLSHP----QALASSDIVLTQLGV--A-RENVDDTASAAQYVASNGLRDAG 239 (384)
Q Consensus 172 gEi~l~I~h~Ll~-~~g-~~l~~I---~~VySHp----qAl~QC~~fL~~~~~--~-~i~~~STA~AA~~v~~~~~~~~A 239 (384)
+..+-.|-|.. ... .+++|+ .-|.-.+ ....+..+|+.+.+. . ...++|...+..+|+.+ ...
T Consensus 166 --~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (312)
T 2h9b_A 166 --VAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAG---EGI 240 (312)
T ss_dssp --EEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcC---CcE
Confidence 22344455554 332 344444 3443211 123456677776654 2 35567777777777764 345
Q ss_pred EEcCHHHH
Q 016702 240 AVASARAA 247 (384)
Q Consensus 240 AIas~~aA 247 (384)
|+.+...+
T Consensus 241 a~lp~~~~ 248 (312)
T 2h9b_A 241 SLVPASTQ 248 (312)
T ss_dssp EEEEGGGG
T ss_pred EEecchhh
Confidence 55565543
No 104
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=46.90 E-value=84 Score=26.03 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=64.5
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCcc-
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~- 194 (384)
+.++++. ++.++++++.+|++|+++.++.-+.+- ...++ ...++. .....++.+++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r--~~~~~--~~~p~~-------~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITITDER--KKAID--FSDGYY-------KSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECCHHH--HTTSE--ECSCCE-------EEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCCHHH--hCccc--cccchh-------cCceEEEEeCCCCCCCCHHHhCC
Confidence 3566665 689999999999999987654311110 00011 111221 223344444332 234442
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 -~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....-. . ...||.+. +...+.+.|..++.+++..+ .-.|++.+...+..
T Consensus 110 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 163 (226)
T 1wdn_A 110 KVVAVKSGT-G-SVDYAKANIKTKDLRQFPNIDNAYMELGTN--RADAVLHDTPNILY 163 (226)
T ss_dssp CEEEEETTS-H-HHHHHHHHCCCSEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CEEEEEcCC-c-HHHHHHHhCCCceEEEeCCHHHHHHHHHcC--CcCEEEeCcHHHHH
Confidence 44433221 1 24577764 67778889999999998876 35677777665543
No 105
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=46.50 E-value=23 Score=33.46 Aligned_cols=51 Identities=22% Similarity=0.081 Sum_probs=39.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C-CC---cccCCCCHHHHHHHHHhCCCCeEEEee
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P-KC---ETVPCDEFEDTFKAVELWLADKAVLPI 148 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~-~~---~~~~~~s~~~Vf~aV~~g~~d~gVvPi 148 (384)
..+|+| |+.||-+|.++..++ | +. ..+++.+..+++.++.+|++|..+...
T Consensus 146 gk~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 146 GKRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp TSEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 458886 678998898776654 2 11 347899999999999999999998753
No 106
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=45.99 E-value=88 Score=28.33 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=74.4
Q ss_pred CceEEEEECCCCcHH---HHHHHH-HC---C-CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc-cC
Q 016702 96 TKVRISFKGLPGSFS---EDAALK-AY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RH 166 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS---~~AA~~-~f---~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~-~~ 166 (384)
.+.+|.+-+..+++. ..|..+ +| | ++++++..+..+++++|.+|++|+++.+..... .... ..
T Consensus 33 ~~~~i~~~~~~~~~~~~~~~a~~~g~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~--------~~~~~~~ 104 (346)
T 3qsl_A 33 AKVQIAVGGKPLIYYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTL--------SLQAKGQ 104 (346)
T ss_dssp SEEEEEESCTTSGGGHHHHHHHHTTHHHHTTCEEEEEECSSHHHHHHHHHTTSCSEEEEETHHHH--------HHHHTTC
T ss_pred CceEEEecCccchhhhHHHHHHHCCchHhhCCeEEEEecCChHHHHHHHHCCCCCEEccchHHHH--------HHHhCCC
Confidence 356676655555432 222211 23 2 257788899999999999999999997654321 1111 23
Q ss_pred CeEEEEEEEEeeeeeeecCCC-----CCcCCcc--EEEec-HH--HHHHHHHHHHhcC-----CeEEecCCHHHHHHHHH
Q 016702 167 RLHIVGEVQLAANFCLLALPG-----IKADQLK--RVLSH-PQ--ALASSDIVLTQLG-----VARENVDDTASAAQYVA 231 (384)
Q Consensus 167 ~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~--~VySH-pq--Al~QC~~fL~~~~-----~~~i~~~STA~AA~~v~ 231 (384)
++.+.+.....-...++.+++ .+++|++ +|... +- .....+.+|.+.+ ++.+...+.+++...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~ 184 (346)
T 3qsl_A 105 FYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALR 184 (346)
T ss_dssp CEEEEEESBSSCCEEEEEETTTCTTCCSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHH
T ss_pred CeEEEEecccCCCcEEEEecCcccCCCChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHH
Confidence 455554433322344555442 2345553 56544 32 2334567887765 35677777777777777
Q ss_pred hc
Q 016702 232 SN 233 (384)
Q Consensus 232 ~~ 233 (384)
.+
T Consensus 185 ~G 186 (346)
T 3qsl_A 185 SG 186 (346)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 107
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=45.74 E-value=23 Score=31.79 Aligned_cols=51 Identities=22% Similarity=0.044 Sum_probs=38.7
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEeee
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIE 149 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiE 149 (384)
..+||+. +.||.++...+.++.+.+++.. ++.+...++.+|++|.+++.-+
T Consensus 103 GK~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~~ 153 (280)
T 1zbm_A 103 GKRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIHE 153 (280)
T ss_dssp TCEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECSG
T ss_pred CCEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEech
Confidence 4689986 4578778767767766666554 5689999999999999887543
No 108
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=45.28 E-value=19 Score=33.10 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=37.9
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C-CCcccCCC-CHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCD-EFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~-~~~~~~~~-s~~~Vf~aV~~g~~d~gVvP 147 (384)
..|||+-| .||-+|...+.++ | ++++++.. ++.++..++.+|++|.+++|
T Consensus 96 GK~Iav~~-~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 96 EPALYVFG-NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp SCCEECSS-TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCEEEecC-CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 35888754 5787776544432 3 56777777 89999999999999999986
No 109
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=44.78 E-value=71 Score=27.04 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=71.1
Q ss_pred CCCceEEEEECCCCcH-HHHHH---HHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCe
Q 016702 94 DGTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (384)
Q Consensus 94 ~~~~~~Va~LGP~GTf-S~~AA---~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l 168 (384)
.++..+||+...-+.+ --.+. ++.++++++. -..+..++.+++.+|++|+|++.......+. ....|.+.++
T Consensus 6 ~~g~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l---~~~~l~~~~~ 82 (218)
T 2y7p_A 6 STRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF---FQRRLFRHRY 82 (218)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTE---EEEEEEEECE
T ss_pred cceEEEEEecHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCcce---eEEEeeeccE
Confidence 3566778764222211 11111 2345765442 2345578899999999999997532111111 1111222222
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCcc---EEEe-cHH-HHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEE
Q 016702 169 HIVGEVQLAANFCLLALPGIKADQLK---RVLS-HPQ-ALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGA 240 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS-Hpq-Al~QC~~fL~~~~~~---~i~~~STA~AA~~v~~~~~~~~AA 240 (384)
.+ .+|-.|-|.. +..+++|+. -|.. .+. ...+..+++.+.+.. ...++|...+..+|+.+ ...|
T Consensus 83 ~~----v~~~~hpla~-~~i~l~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g---~Gia 154 (218)
T 2y7p_A 83 VC----MFRKDHPSAK-SPMSLKQFTELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIA 154 (218)
T ss_dssp EE----EEETTCSSCC-SSCCHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBE
T ss_pred EE----EEcCCCCCCC-CCCCHHHHhhCCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCC---CEEE
Confidence 22 2455566654 334455543 2322 221 123355566665543 34566766677777764 3456
Q ss_pred EcCHHHH
Q 016702 241 VASARAA 247 (384)
Q Consensus 241 Ias~~aA 247 (384)
|.++.++
T Consensus 155 ilp~~~~ 161 (218)
T 2y7p_A 155 TVPQRFA 161 (218)
T ss_dssp EEEHHHH
T ss_pred EcHHHHH
Confidence 6666544
No 110
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=44.20 E-value=21 Score=33.49 Aligned_cols=48 Identities=15% Similarity=-0.081 Sum_probs=36.2
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C----CCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~----~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+|++ |.||.++.....++ | +++++++ ++.+++.++.+|++|.++++
T Consensus 119 Gk~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 119 GKKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp TSEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred CCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 358998 57888887665544 3 2455655 68899999999999998875
No 111
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=43.90 E-value=41 Score=31.33 Aligned_cols=84 Identities=13% Similarity=-0.031 Sum_probs=52.5
Q ss_pred CceEEEEECCCCcHHHHHHHHHC-CC--C------cccCCCCHHHHHHHHHhCCCCeEEEeeecccccccccccccccc-
Q 016702 96 TKVRISFKGLPGSFSEDAALKAY-PK--C------ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR- 165 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS~~AA~~~f-~~--~------~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~- 165 (384)
+..+|+|-.|-.+..|.+...++ .. . ..++..+.++++.+|.+|++|.+++... ++..+.+
T Consensus 115 kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~ 185 (310)
T 3n5l_A 115 KSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELT 185 (310)
T ss_dssp GGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHH
T ss_pred CCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHh
Confidence 34589986665555566655433 21 2 2344578899999999999999998743 2222221
Q ss_pred -----CCeEEEEEEEEeeeeeeecCCCC
Q 016702 166 -----HRLHIVGEVQLAANFCLLALPGI 188 (384)
Q Consensus 166 -----~~l~I~gEi~l~I~h~Ll~~~g~ 188 (384)
.++++.++...--.+.++.+++.
T Consensus 186 ~~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 186 QPEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp CHHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred CccchhCEEEEEECCCCCCCcEEEECCC
Confidence 35788776544345667777653
No 112
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=43.62 E-value=16 Score=33.37 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=64.2
Q ss_pred CceEEEEECCCCcHHHHHHHHHCC----CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc---cCCe
Q 016702 96 TKVRISFKGLPGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHRL 168 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS~~AA~~~f~----~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~---~~~l 168 (384)
.+.+||+.+...+.-..++.++|. +++++.+.+..+..+|+.+|++|++..-- ...++.+. ..++
T Consensus 3 ~~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~--------~~~l~~~~~~~g~~l 74 (241)
T 1xs5_A 3 ETVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH--------VPHMQQFNQEHNGDL 74 (241)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE--------HHHHHHHHHHHTCCE
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCC--------HHHHHHHHHHCCCCE
Confidence 357999986543322344455663 26899999999999999999999976421 11233322 2467
Q ss_pred EEEEEEEEeeeeeeecCCCCCcCCcc---EEEe--cHHHHHHHHHHHHhcC
Q 016702 169 HIVGEVQLAANFCLLALPGIKADQLK---RVLS--HPQALASSDIVLTQLG 214 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS--HpqAl~QC~~fL~~~~ 214 (384)
.+++.+...- ..+.+.+-.+++|++ +|.- -|--..-...+|.+.|
T Consensus 75 ~~v~~~~~~p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aG 124 (241)
T 1xs5_A 75 VSVGNVHVEP-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAG 124 (241)
T ss_dssp EEEEEEEECC-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEEeecccc-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCC
Confidence 7777554332 345555444667772 4432 2333333444565544
No 113
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=42.53 E-value=65 Score=28.82 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=64.2
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeec-cccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc-
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIEN-SSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK- 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiEN-S~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~- 194 (384)
++++++++ +.+++.++.+|++|+++..+.- +.+- ...++. ..++ ......++++++. +++|++
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~t~~r--~~~~~~--~~p~-------~~~~~~l~~~~~~~i~s~~dL~G 164 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGLTSPER--QATFDK--SEPY-------SWSGAVLVAHNDSNIKSIADIKG 164 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCCCSHHH--HHHEEE--CSCS-------EEECEEEEEETTCSCCSGGGCTT
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCccCChhh--hcceEe--ccCe-------eeecEEEEEECCCCCCCHHHhCC
Confidence 36777777 8999999999999998743321 1000 000110 1111 1223345554432 344442
Q ss_pred -EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHH
Q 016702 195 -RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (384)
Q Consensus 195 -~VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~ 248 (384)
+|..-.-.. -..+|.+.+++.+.+.+..++.+.+..+ .-.|++.....+.
T Consensus 165 ~~v~v~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~i~~~~~~~ 215 (283)
T 2yln_A 165 VKTAQSLTSN--YGEKAKAAGAQLVPVDGLAQSLTLIEQK--RADATLNDELAVL 215 (283)
T ss_dssp SEEEECTTSH--HHHHHHHTTCEEEECSSHHHHHHHHHTT--SCCEEEEEHHHHH
T ss_pred CEEEEecCch--HHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 454322111 2346776688888888999999988876 3467777665544
No 114
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=42.52 E-value=1.5e+02 Score=24.68 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCCC----cCCcc-
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIK----ADQLK- 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~----l~~I~- 194 (384)
+.++++. ++.++++++++|++|+ +.++--+ -+. ...+. ...-.......++.+++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~~--------~~r--~~~~~-~s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISWS--------EKR--ARQID-FTPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEECC--------HHH--HTTEE-EEEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccCC--------HhH--HhhcC-CCccccccceEEEEECCCCCCCCHHHhCC
Confidence 3566655 7899999999999998 4443211 110 11122 2223445556677665432 33332
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHH
Q 016702 195 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (384)
Q Consensus 195 -~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~ 248 (384)
+|....-.. -..+|.+. ++..+.+.|..++.+++..+ .-.|++.....+.
T Consensus 118 ~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDGI--MHEYLAERGYGKDLVLTPTPADALRLLAAG--GCDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTSH--HHHHHHTTTCGGGEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEEeCch--HHHHHHhcCCCceEEEeCCHHHHHHHHHcC--CceEEEeccHHHH
Confidence 333222111 13567665 36788899999999999886 3567777776554
No 115
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=41.61 E-value=1.1e+02 Score=26.99 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=67.0
Q ss_pred CCCceEEEEECCCCcH-HHHHH---HHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc-cCC
Q 016702 94 DGTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHR 167 (384)
Q Consensus 94 ~~~~~~Va~LGP~GTf-S~~AA---~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~-~~~ 167 (384)
..+..+|++...-+.+ --... .+.++++++. -..+-.++.+.+.+|++|+|++.-.....+.. ...|. +..
T Consensus 93 ~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~ 169 (306)
T 3fzv_A 93 IAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIE---TEPLMPPQR 169 (306)
T ss_dssp CCEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEE---EEESSCCBC
T ss_pred CCceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccc---eeeeeeccc
Confidence 3456788876433321 11111 2235665432 23567888999999999999986443322211 11222 223
Q ss_pred eEEEEEEEEeeeeeeecCCCCCc---CCccEEEec-HHHHHHHHHHHHhcCC--e-EEecCCHHHHHHHHHhc
Q 016702 168 LHIVGEVQLAANFCLLALPGIKA---DQLKRVLSH-PQALASSDIVLTQLGV--A-RENVDDTASAAQYVASN 233 (384)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l---~~I~~VySH-pqAl~QC~~fL~~~~~--~-~i~~~STA~AA~~v~~~ 233 (384)
+.+ .++-.|-|...+..++ .+..-|.-. +..-....+|+.+.+. . ...++|...+..++..+
T Consensus 170 ~~~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g 238 (306)
T 3fzv_A 170 PHA----LLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG 238 (306)
T ss_dssp CEE----EEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT
T ss_pred cEE----EecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC
Confidence 322 2344555544332222 333344432 2223445566666553 2 34566666666677664
No 116
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=41.27 E-value=1.3e+02 Score=25.73 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCcc-
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~- 194 (384)
..++++. ++.+++.++.+|++|.++.++.-+.+..- ......++ ......++.+++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~----~~~~s~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEERRK----AIDFSDPY-------YDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHHHHT----TEEECSCC-------EEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHHHHc----Ccceecce-------eeccEEEEEECCCCCcCChHHhCC
Confidence 3566665 67999999999999997755432211100 01111122 2233445544332 233432
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 -~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|..-.- ... ..||.+. +...+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 131 ~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKTG-TAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEETT-SHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CEEEEeCC-ChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHHH
Confidence 3433221 122 3566664 57788899999999999886 45678877766653
No 117
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=41.23 E-value=1.6e+02 Score=24.68 Aligned_cols=144 Identities=16% Similarity=0.050 Sum_probs=71.7
Q ss_pred CCceEEEEECCCCc-HHHHH---HHHHCCCCcccC-CCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeE
Q 016702 95 GTKVRISFKGLPGS-FSEDA---ALKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLH 169 (384)
Q Consensus 95 ~~~~~Va~LGP~GT-fS~~A---A~~~f~~~~~~~-~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~ 169 (384)
.+..+||+...-+. +--.+ -++.+++.++.. ..+-+++.+.+.+|++|+|++.......+... ..|.+.++.
T Consensus 29 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 105 (238)
T 2hxr_A 29 RGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEA---IPLLTESLA 105 (238)
T ss_dssp --CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEEE---EEEEEEEEE
T ss_pred CCeEEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCccccee---eeeccCcEE
Confidence 45678887543221 11111 123467665432 34678899999999999999864321111111 111111221
Q ss_pred EEEEEEEeeeeeeecCCCCCcCCcc---EEE-ecHHHH-HHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEE
Q 016702 170 IVGEVQLAANFCLLALPGIKADQLK---RVL-SHPQAL-ASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAV 241 (384)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I~---~Vy-SHpqAl-~QC~~fL~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAI 241 (384)
+ .++-.|-|...+..+++++. -|. +..... .....|+.+.+.. ...++|...+..++..+ ...|+
T Consensus 106 ~----v~~~~hpl~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi~~ 178 (238)
T 2hxr_A 106 L----VVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRT---SLSTL 178 (238)
T ss_dssp E----EEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHS---SCBEE
T ss_pred E----EEcCCCcccccCCCCHHHHhcCCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CcEEE
Confidence 1 22334444433333444543 333 222222 3455666665542 34566777777777775 34566
Q ss_pred cCHHHHH
Q 016702 242 ASARAAE 248 (384)
Q Consensus 242 as~~aA~ 248 (384)
.+...+.
T Consensus 179 lp~~~~~ 185 (238)
T 2hxr_A 179 LPAAIAT 185 (238)
T ss_dssp EETHHHH
T ss_pred ecHHHhc
Confidence 6666554
No 118
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=39.62 E-value=11 Score=32.33 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=64.6
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCcc-
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK- 194 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~- 194 (384)
.+++++ ++.++++++++|++|.++.++.-+-+-. -.+....++ +.....++.+++ .+++|++
T Consensus 56 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~----~~~~fs~p~-------~~~~~~~~~~~~~~~~i~~~~dL~~ 123 (239)
T 3kbr_A 56 LVVVPT-SWPNLMRDFADDRFDIAMSGISINLERQ----RQAYFSIPY-------LRDGKTPITLCSEEARFQTLEQIDQ 123 (239)
T ss_dssp EEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHHHH----TTCEECSCS-------EEECEEEEEEGGGGGGGSSHHHHSS
T ss_pred eEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHHHc----CccccchHH-------hccCcEEEEECCcccccCCHHHhcC
Confidence 567777 8999999999999998865433211100 001011122 122233443332 1334443
Q ss_pred ---EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHc
Q 016702 195 ---RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (384)
Q Consensus 195 ---~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~y 250 (384)
+|....... -..||.+. +...+.+.|..++.+++..+ .-.|+|.....+..+
T Consensus 124 ~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 124 PGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDG--KADLMMTDAIEARLQ 180 (239)
T ss_dssp TTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTT--SCSEEEEEHHHHHHH
T ss_pred CCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcC--CcCEEEEchHHHHHH
Confidence 454332221 13466653 57788888999999998876 356778777766543
No 119
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=39.05 E-value=90 Score=27.32 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc--
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK-- 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~-- 194 (384)
+.++++.+ +.++++++.+|++|+++.++.-+.+- ...+... .-+......++++++. +++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~r----------~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITITDER----------KQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCCHHH----------HTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCCHHH----------HhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 35677765 99999999999999987432211100 0011110 1112233445554432 233332
Q ss_pred EEEecHHHHHHHHHHHHhc---CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 RVLSHPQALASSDIVLTQL---GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 ~VySHpqAl~QC~~fL~~~---~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....-. .. ..||.+. +...+.+.|..++.+++..+ .-.|++.....+..
T Consensus 149 ~i~~~~g~-~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNAT-TG-QEAAEKLFGKGPHIKKFETTVVAIMELLNG--GVDAVITDNAVANE 202 (272)
T ss_dssp CEEEETTS-HH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred eEEEEcCc-hH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 34332211 11 2455543 46677888999999998876 35677777665543
No 120
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=38.71 E-value=2e+02 Score=25.38 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=62.9
Q ss_pred HCCCCcccCC-CCHHHHHHHHHhCCCCeEEEeeecc--ccccccccccccccCCeEEEEEEEEeeeeeeecCCCCCcCC-
Q 016702 117 AYPKCETVPC-DEFEDTFKAVELWLADKAVLPIENS--SSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQ- 192 (384)
Q Consensus 117 ~f~~~~~~~~-~s~~~Vf~aV~~g~~d~gVvPiENS--~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~- 192 (384)
.++++++... .+.+++.+.+.+|++|+|+...... ..+... ..|.+..+.++ .+-.|-|... .++++
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~~---~~L~~~~~~~v----~~~~hpla~~--~~~~dL 187 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEA---QPLYVSDVVIV----GQRQHPMANA--TRLAEL 187 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEE---EEEEECCEEEE----EETTCTTTTC--CSGGGG
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCeeE---EEeecCcEEEE----EcCCCCCCCC--CCHHHH
Confidence 4666554322 3456788899999999999864322 112111 12223333332 2333433321 12333
Q ss_pred --ccEEEe-cHHH-HHHHHHHHHhcCC-e---EEecCCHHHHHHHHHhcCCCCeEEEcCHHHHH
Q 016702 193 --LKRVLS-HPQA-LASSDIVLTQLGV-A---RENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (384)
Q Consensus 193 --I~~VyS-HpqA-l~QC~~fL~~~~~-~---~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~ 248 (384)
..-|.. .+.. -....+|+.+.+. . ...++|...+..+++.+ ...|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 188 QECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp TTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred hCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 334433 2222 2456778877664 2 34566766667777764 346777777665
No 121
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=38.30 E-value=1.8e+02 Score=27.14 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=77.1
Q ss_pred CCceEEEEECCCCcHHHHH---H---HHH----CC-CCcccCCCCHHHHHHHHHhCCCCeEEEeeecc---ccccccccc
Q 016702 95 GTKVRISFKGLPGSFSEDA---A---LKA----YP-KCETVPCDEFEDTFKAVELWLADKAVLPIENS---SSGSIHRNY 160 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS~~A---A---~~~----f~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS---~~G~V~~tl 160 (384)
.++++|+.-+|-|+|--.+ | .+. .| ++++.+...-.+.+.++.+|++|++++..... ..|.. .+
T Consensus 31 ~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~--~f 108 (327)
T 4ddd_A 31 REYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLG--FY 108 (327)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCG--GG
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcC--cc
Confidence 4567888877777774322 1 122 12 24667778888999999999999999864311 11110 01
Q ss_pred ccc-ccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc--EEEe-cHH--HHHHHHHHHHhcCC-----eEEecCCHHHH
Q 016702 161 DLL-LRHRLHIVGEVQLAANFCLLALPGI---KADQLK--RVLS-HPQ--ALASSDIVLTQLGV-----ARENVDDTASA 226 (384)
Q Consensus 161 DlL-~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~VyS-Hpq--Al~QC~~fL~~~~~-----~~i~~~STA~A 226 (384)
|-= ...++..++-+.- -...|+++++. +++|++ +|.- .+- .....+.|+++.++ ..++..+.+++
T Consensus 109 ~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a 187 (327)
T 4ddd_A 109 EKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQ 187 (327)
T ss_dssp TTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHH
T ss_pred cccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHH
Confidence 100 1235666665543 34556665542 344443 4432 221 12335667776665 34677888999
Q ss_pred HHHHHhc
Q 016702 227 AQYVASN 233 (384)
Q Consensus 227 A~~v~~~ 233 (384)
...+..+
T Consensus 188 ~~aL~~G 194 (327)
T 4ddd_A 188 AQALCDN 194 (327)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8888775
No 122
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=38.18 E-value=2e+02 Score=24.88 Aligned_cols=116 Identities=12% Similarity=0.011 Sum_probs=62.4
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCcc
Q 016702 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (384)
Q Consensus 120 ~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (384)
+.++++. ++.++++++.+|++|.++-++-.+-+.. ..++ ...++. .....++.+++ .+++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~~~--fs~p~~-------~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITDKRK--KVID--FSEPYY-------INSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHHH--TTEE--ECCCSE-------EEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHHh--hccc--cccchh-------hCceEEEEEcCCCCCCCCHHHhC
Confidence 3677777 8999999999999999876543222111 0000 111221 12233333221 1334442
Q ss_pred --EEEecHH--HHHHHHHHHHhcC----CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 --RVLSHPQ--ALASSDIVLTQLG----VARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 --~VySHpq--Al~QC~~fL~~~~----~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....- ....-++++...+ ...+.+.|..++.+++..+ .-.|++.....+..
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 197 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNG--NLDLAFIEEPVYFT 197 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 3433221 1111222333323 5677888999999999886 35677777765543
No 123
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=37.66 E-value=62 Score=29.28 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=61.0
Q ss_pred HCCCCcccC-CCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCCCcCCcc-
Q 016702 117 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK- 194 (384)
Q Consensus 117 ~f~~~~~~~-~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~- 194 (384)
.++++++.- ..+.+++.+.+.+|++|+|++.......+... ..|.+.++.++ .+-.|-|.. +..+++|+.
T Consensus 130 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~v----~~~~hpl~~-~~i~~~dL~~ 201 (315)
T 1uth_A 130 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVCM----FRKDHPSAK-SPMSLKQFSE 201 (315)
T ss_dssp HCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEEE----EETTCSSCC-SSCCHHHHHH
T ss_pred HCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEEE----EeCCCCCcC-CCCCHHHHhc
Confidence 356654422 23446788999999999999864322222111 11222222222 233343432 223344432
Q ss_pred --EE-EecHH-HHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcCHHHHH
Q 016702 195 --RV-LSHPQ-ALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (384)
Q Consensus 195 --~V-ySHpq-Al~QC~~fL~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~ 248 (384)
.| +..+. .......|+.+.+.. ...++|......+++.+ ...||.+...+.
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~ 259 (315)
T 1uth_A 202 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAV 259 (315)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHH
T ss_pred CCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHH
Confidence 23 22221 123456777776542 34566766666667664 345666766554
No 124
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=36.96 E-value=14 Score=32.49 Aligned_cols=113 Identities=9% Similarity=-0.049 Sum_probs=59.3
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc--E
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 195 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~ 195 (384)
.++++++ +.+++.++.+|++|+++-++- .|-+.- ..+... .-+......++++++. +++|++ +
T Consensus 62 ~~~~~~~-~~~~~~~l~~g~~D~~~~~~~--------~t~~r~--~~~~fs-~p~~~~~~~~~~~~~~~i~~~~dL~g~~ 129 (268)
T 3hv1_A 62 VEWQAID-WDMKETELKNGTIDLIWNGYS--------VTDERK--QSADFT-EPYMVNEQVLVTKKSSGIDSVAGMAGKT 129 (268)
T ss_dssp EEEEECC-GGGHHHHHHHTSCSEECSSCB--------CCHHHH--TTCEEC-CCCEEECEEEEEEGGGCCCSSGGGTTCC
T ss_pred EEEEECC-HHHHHHHHHCCCCCEEEecCc--------cCHHHH--hcCcCc-HHHeeCceEEEEECCCCCCCHHHhCCCE
Confidence 5677774 999999999999998762221 111100 001000 0112223344444321 233332 2
Q ss_pred EEecHHHHHHHHHHHHhc---------CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 196 VLSHPQALASSDIVLTQL---------GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 196 VySHpqAl~QC~~fL~~~---------~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
|..-. .... ..+|.+. +...+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 130 i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 188 (268)
T 3hv1_A 130 LGAQA-GSSG-YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSG--RIDGLLIDRVYANY 188 (268)
T ss_dssp EEEET-TCHH-HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred EEEEe-CCch-HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcC--CCCEEEeCHHHHHH
Confidence 32211 1111 2233322 25778889999999999986 35677777765543
No 125
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=36.34 E-value=1.5e+02 Score=29.05 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=42.1
Q ss_pred eEEEEEE-eCCCcchHHHHHHHHHhCCceeeeeeeeeCCC-CCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHH
Q 016702 286 KTSIVFT-LDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALG 363 (384)
Q Consensus 286 Ktsl~f~-~~~~pGaL~~~L~~F~~~~INLtkIESRP~~~-~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~ 363 (384)
-+.|.+. .+++||.+.++++.|+++|||+-.|-. ++.. .. | .-...|.|+-+ +..+..++|+
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q-~~s~~~~---------g---~~~isf~v~~~---~~~~a~~~l~ 327 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ-NVFSVED---------G---TTDITFTCPRS---DGRRAMEILK 327 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE-CCCC--C---------C---EEEEEEEEETT---THHHHHHHHH
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc-cCccccC---------C---cceEEEEEech---hHHHHHHHHH
Confidence 4445444 689999999999999999999998843 2210 00 0 02356777642 2244566777
Q ss_pred HHHH
Q 016702 364 HLQE 367 (384)
Q Consensus 364 ~L~~ 367 (384)
+++.
T Consensus 328 ~~~~ 331 (421)
T 3ab4_A 328 KLQV 331 (421)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 126
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=36.04 E-value=2e+02 Score=24.26 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=69.2
Q ss_pred CCCCceEEEEECCCCc-HHHHHHH---HHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCC
Q 016702 93 NDGTKVRISFKGLPGS-FSEDAAL---KAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHR 167 (384)
Q Consensus 93 ~~~~~~~Va~LGP~GT-fS~~AA~---~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~ 167 (384)
...+.++|++...-+. +--.+.. +.|+++++. -..+-.++.+.+.+|++|+|++.... .+
T Consensus 24 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~~------------- 88 (238)
T 3onm_A 24 NMEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--DS------------- 88 (238)
T ss_dssp ---CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC---C-------------
T ss_pred CCceeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--CC-------------
Confidence 4566788887543222 2222222 235665542 34667889999999999999986431 11
Q ss_pred eEEEEEEEEeeeeeeecCCCCC---cCCccEEEe-cHHH-HHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeE
Q 016702 168 LHIVGEVQLAANFCLLALPGIK---ADQLKRVLS-HPQA-LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAG 239 (384)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~---l~~I~~VyS-HpqA-l~QC~~fL~~~~~~---~i~~~STA~AA~~v~~~~~~~~A 239 (384)
+..+.......++++.++-. ...+.-|.- +... .....+|+.+.+.. ...++|...+.++|+.+ ...
T Consensus 89 --~~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi 163 (238)
T 3onm_A 89 --HPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGV 163 (238)
T ss_dssp --CCEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCB
T ss_pred --cceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeE
Confidence 11111122223333333222 223443432 2222 34456777776543 24566777777777764 345
Q ss_pred EEcCHHHH
Q 016702 240 AVASARAA 247 (384)
Q Consensus 240 AIas~~aA 247 (384)
||.+...+
T Consensus 164 ailp~~~~ 171 (238)
T 3onm_A 164 TARPIEMM 171 (238)
T ss_dssp EEEEGGGC
T ss_pred EEechHHc
Confidence 56555443
No 127
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=35.74 E-value=2.5e+02 Score=25.48 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=70.7
Q ss_pred CCceEEEEECCCCcHH-HHHHHH--HC---C-CCcccCCCCHH-HHHHHHHhCCCCeEEEeeeccccccccccccccccC
Q 016702 95 GTKVRISFKGLPGSFS-EDAALK--AY---P-KCETVPCDEFE-DTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH 166 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS-~~AA~~--~f---~-~~~~~~~~s~~-~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~ 166 (384)
..+++|+|. |...+. -..|.+ +| | +++++++.+-. .++.++.+|++|+++......+.. .....
T Consensus 14 ~~~l~ig~~-~~~~~~p~~~A~~~G~~~~~Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~~-------~~~g~ 85 (321)
T 2x7q_A 14 LPTLKVAYI-PEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFIAD-------IAKGN 85 (321)
T ss_dssp CCCEEEEEC-CSGGGHHHHHHHHTTHHHHTTCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHHHHHHH-------HHTTC
T ss_pred CceEEEEee-CCccchHHHHHHHCCcHHHCCceEEEEECCCCHHHHHHHHHcCCccEEecCcHHHHHH-------HHCCC
Confidence 346899997 433322 223332 44 2 35677766644 589999999999998754311110 01123
Q ss_pred C-eEEEEEEEE-eeeeeeecCCC----CCcCCccEEEecH-HHHH-HHHHHH-HhcCC----eEEecCCHHHHHHHHHhc
Q 016702 167 R-LHIVGEVQL-AANFCLLALPG----IKADQLKRVLSHP-QALA-SSDIVL-TQLGV----ARENVDDTASAAQYVASN 233 (384)
Q Consensus 167 ~-l~I~gEi~l-~I~h~Ll~~~g----~~l~~I~~VySHp-qAl~-QC~~fL-~~~~~----~~i~~~STA~AA~~v~~~ 233 (384)
+ +.+++-+.- |....++++++ .+++|+|+|.... -.-. ....+| .+.++ +.+.+.+.+++...+..+
T Consensus 86 ~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DLK~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 86 ENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp TTEEEEEEEECSCCEEEEEEESSCTTCSSGGGCCEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred CcEEEEEEecCCCcceEEEECCCCCCCCChHHcceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 4 777665442 22235665432 2345667776553 1111 123344 44554 556666777777766654
No 128
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=35.68 E-value=1.6e+02 Score=29.51 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=61.2
Q ss_pred HHHHcCCceeeccccCCCCCeeEEEEEeeCCCC-C-----CC--CCCceEEEEEE---eCCCcchHHHHHHHHHhCCcee
Q 016702 246 AAEIYGLNILADRIQDEPDNITRFLVLARDPII-P-----RT--DKLFKTSIVFT---LDEGPGVLFKALAVFALREINL 314 (384)
Q Consensus 246 aA~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~-~-----~~--~~~~Ktsl~f~---~~~~pGaL~~~L~~F~~~~INL 314 (384)
-|..+|+++.-.|..+...-=|.|. ..... + ++ ...+-+.|.+. .++.||.+.++++.|++++||.
T Consensus 253 ~a~~~~ipi~i~~~~~p~~~GT~i~---~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v 329 (446)
T 3tvi_A 253 PVKDSGIPINIKNTNKPSDPGTLIL---SDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSF 329 (446)
T ss_dssp HHHHSSCCEEEEETTBTTSCCEEEE---CTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCE
T ss_pred HHHHcCCeEEEecCCCCCCCCEEEe---cCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcE
Confidence 3556899998888766444457663 22111 1 11 11122333333 2578999999999999999999
Q ss_pred eeeeeeeCCCCCCccccCCCCCCcccccEEEEEEeecCCCcHHHHHHHHHHHHhc
Q 016702 315 TKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFA 369 (384)
Q Consensus 315 tkIESRP~~~~~~~~~~~~~~~~~~~~~Y~FfID~eg~~~d~~v~~al~~L~~~~ 369 (384)
-.|.+-+ -...|.|+-+.-. ...++++++|+..+
T Consensus 330 d~i~~~~-------------------~~is~~V~~~d~~--~~~~~~~~el~~~~ 363 (446)
T 3tvi_A 330 EHMPSGV-------------------DSVSLVIEDCKLD--GKCDKIIEEIKKQC 363 (446)
T ss_dssp EEBCEET-------------------TEEEEEEEHHHHT--TTHHHHHHHHHHHS
T ss_pred EEEecCC-------------------CEEEEEEecchHH--HHHHHHHHHHHHhc
Confidence 9885421 2467888753211 14567788887654
No 129
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=35.55 E-value=21 Score=33.61 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=55.4
Q ss_pred CceEEEEECCCCcHHHHHHHHHCC----CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc----cCC
Q 016702 96 TKVRISFKGLPGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL----RHR 167 (384)
Q Consensus 96 ~~~~Va~LGP~GTfS~~AA~~~f~----~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~----~~~ 167 (384)
.+.+||+.+|.... ..++.++|. +++++.+.+..+..+++.+|++|++...-. ..++.+. ..+
T Consensus 39 ~~i~IG~~~~~~~~-~~~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~~--------~~l~~~~~~~~g~~ 109 (295)
T 1p99_A 39 KKVTIGVASNDTKA-WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHF--------AFLDQYKKAHKGTK 109 (295)
T ss_dssp -CEEEEESSSCCHH-HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEH--------HHHHHHHHHCTTCC
T ss_pred CeEEEEEeCCcHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCCH--------HHHHHHHHhcCCCC
Confidence 46899999765533 344555674 368899999999999999999999874221 1122222 246
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCc
Q 016702 168 LHIVGEVQLAANFCLLALPGIKADQL 193 (384)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I 193 (384)
+.+++.+...- ..+.+.+-.+++|+
T Consensus 110 l~~v~~~~~~p-~g~ys~~iksl~DL 134 (295)
T 1p99_A 110 ISALSTTVLAP-LGIYSDKIKDVKKV 134 (295)
T ss_dssp EEEEEEEEECC-CEEECSSCSCGGGC
T ss_pred EEEEEeecccc-ceeecCCCCChHHc
Confidence 77777654331 34444433456666
No 130
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=35.21 E-value=29 Score=30.75 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=35.7
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHH--HHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDT--FKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~V--f~aV~~g~~d~gVvP 147 (384)
..+||+ +.|+..+....+ ++. +++.+.+..++ +++|.+|++| +++.
T Consensus 132 g~~i~v--~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~ 179 (271)
T 2iee_A 132 GKKAAG--AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILN 179 (271)
T ss_dssp TCEEES--CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEE
T ss_pred CCEEEE--eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEec
Confidence 468887 578877665543 444 77888999999 9999999999 7765
No 131
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=34.86 E-value=1.2e+02 Score=25.48 Aligned_cols=145 Identities=12% Similarity=-0.050 Sum_probs=72.2
Q ss_pred CCCCceEEEEECCCCcH-HHHHH---HHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCC
Q 016702 93 NDGTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHR 167 (384)
Q Consensus 93 ~~~~~~~Va~LGP~GTf-S~~AA---~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~ 167 (384)
...+..+||+...-+++ --... .+.|+++++. -..+-.++.+++.+|++|+|++.......+.. ...|.+.+
T Consensus 16 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~---~~~l~~~~ 92 (241)
T 3oxn_A 16 QCDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLR---SEILGRVG 92 (241)
T ss_dssp SCCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTTEE---EEEEECCC
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCccce---eEEeeccc
Confidence 34567888875432221 11111 2235665442 23456788999999999999996432222211 11222333
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCcc---EEEecH--HHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeE
Q 016702 168 LHIVGEVQLAANFCLLALPGIKADQLK---RVLSHP--QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAG 239 (384)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VySHp--qAl~QC~~fL~~~~~~---~i~~~STA~AA~~v~~~~~~~~A 239 (384)
+.++ ++-.|-|.. +..+++++. -|.-.+ ....+..+|+.+. .. ...++|...+..+++.+ ...
T Consensus 93 ~~~v----~~~~hpl~~-~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g---~gi 163 (241)
T 3oxn_A 93 VLCL----LSKQHPLAN-QEMSLDDYLSHPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL---PII 163 (241)
T ss_dssp EEEE----EETTSGGGG-SCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C---CCE
T ss_pred EEEE----EeCCCCccc-CCCCHHHHhcCCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC---CeE
Confidence 3332 244444443 323333332 332222 1123444455544 32 24667777777777764 456
Q ss_pred EEcCHHHHHH
Q 016702 240 AVASARAAEI 249 (384)
Q Consensus 240 AIas~~aA~~ 249 (384)
||.+...+..
T Consensus 164 ailp~~~~~~ 173 (241)
T 3oxn_A 164 ITVPADLAYL 173 (241)
T ss_dssp EEEEHHHHHH
T ss_pred EEcHHHHHHH
Confidence 6777766653
No 132
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=34.01 E-value=2.6e+02 Score=25.08 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=71.2
Q ss_pred ceEEEEECCCCc-HHHHHH---HHHCCCCcccC-CCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEE
Q 016702 97 KVRISFKGLPGS-FSEDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIV 171 (384)
Q Consensus 97 ~~~Va~LGP~GT-fS~~AA---~~~f~~~~~~~-~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~ 171 (384)
..+|++...-+. +--.+. .+.++++++.. ..+..++.+.+.+|++|+|++.......+... ..|.+.++.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~-- 165 (313)
T 2h98_A 91 TLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRR---IMLHKEQLK-- 165 (313)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE---EEEEEEEEE--
T ss_pred EEEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCCCCCCeeE---EEeeeCcEE--
Confidence 677877543332 111111 23467655432 34568999999999999999854321111111 111111221
Q ss_pred EEEEEeeeeeeec-CCC-CCcCCc---cEEEecH----HHHHHHHHHHHhcCC---eEEecCCHHHHHHHHHhcCCCCeE
Q 016702 172 GEVQLAANFCLLA-LPG-IKADQL---KRVLSHP----QALASSDIVLTQLGV---ARENVDDTASAAQYVASNGLRDAG 239 (384)
Q Consensus 172 gEi~l~I~h~Ll~-~~g-~~l~~I---~~VySHp----qAl~QC~~fL~~~~~---~~i~~~STA~AA~~v~~~~~~~~A 239 (384)
+..+-.|-|.. ... .+++|+ .-|.-.+ ....+..+|+.+.+. ....++|...+..+++.+ ...
T Consensus 166 --~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (313)
T 2h98_A 166 --LAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAG---EGV 240 (313)
T ss_dssp --EEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCcccccCCCCcCHHHHcCCCEEEecCCCCchHHHHHHHHHHHcCCCCCceEEeCCHHHHHHHHHcC---CcE
Confidence 12344454544 322 344444 3444221 123445667776543 245667777777777764 345
Q ss_pred EEcCHHHH
Q 016702 240 AVASARAA 247 (384)
Q Consensus 240 AIas~~aA 247 (384)
|+.+...+
T Consensus 241 a~lp~~~~ 248 (313)
T 2h98_A 241 CIVPASAM 248 (313)
T ss_dssp EEEEGGGG
T ss_pred EEeehhhh
Confidence 56565543
No 133
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=32.64 E-value=1.4e+02 Score=25.62 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=49.4
Q ss_pred ceEEEEECCCCcHHHHHHHHH---CC-CC-cccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc-c--CCe
Q 016702 97 KVRISFKGLPGSFSEDAALKA---YP-KC-ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-R--HRL 168 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~---f~-~~-~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~-~--~~l 168 (384)
..+|++. .||..+....++ .+ .. ......+.++++.+|.+|++|+.+.. .. +++.+. . .++
T Consensus 118 g~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~---~~------~~~~~~~~~~~~~ 186 (243)
T 4gvo_A 118 GKRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST---PF------AVDFQNKTSAIKE 186 (243)
T ss_dssp TCEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC---HH------HHHHHHHTCSSCE
T ss_pred CCeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc---HH------HHHHHHhhCCCce
Confidence 3688875 577666554433 22 22 24578899999999999999976542 11 122222 2 246
Q ss_pred EEEEEEEEeeeeeeecCCC
Q 016702 169 HIVGEVQLAANFCLLALPG 187 (384)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g 187 (384)
.+.++..-+....++.+++
T Consensus 187 ~~~~~~~~~~~~~~~~~k~ 205 (243)
T 4gvo_A 187 KVVGDVLSNAKVYFMLGKD 205 (243)
T ss_dssp EEEEEEEECCEECCEECTT
T ss_pred EEeccCCCCCcEEEEEeCC
Confidence 7788777666666666553
No 134
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=32.10 E-value=58 Score=27.92 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=64.2
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCC-----CCcCCcc-
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK- 194 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~- 194 (384)
.+++++ ++.+++.++.+|++|..+-++-.+.+.. -.+....++ +.....++++++ .+++|++
T Consensus 46 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~----~~~~~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~~ 113 (245)
T 3k4u_A 46 LKLVPT-SWDGLIPGLVTEKFDIIISGMTISQERN----LRVNFVEPY-------IVVGQSLLVKKGLEKGVKSYKDLDK 113 (245)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHHHH----TTSEECSCS-------EEECEEEEEETTTTTTCCSGGGGCC
T ss_pred EEEEEc-cHHHHHHHHhCCCcCEEEecCcCCHHHH----hhcCcchhh-------heeceEEEEECCcccccCCHHHhcc
Confidence 566665 6999999999999998654332211100 001111122 122334555443 2345554
Q ss_pred ---EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 ---RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 ---~VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|....- ... ..+|.+. +...+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 114 ~g~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 169 (245)
T 3k4u_A 114 PELTLVTKFG-VSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNVA 169 (245)
T ss_dssp SSCEEEEETT-SHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHHH
T ss_pred CCcEEEEeCC-cHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHHH
Confidence 3433322 222 3466553 57888899999999999876 46788888755543
No 135
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=31.42 E-value=2.1e+02 Score=23.22 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=70.8
Q ss_pred CceEEEEECCCCc-H-HHHH--HHHHCCCCccc-CCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEE
Q 016702 96 TKVRISFKGLPGS-F-SEDA--ALKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHI 170 (384)
Q Consensus 96 ~~~~Va~LGP~GT-f-S~~A--A~~~f~~~~~~-~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I 170 (384)
+..+||+...-+. + ...- -++.+++.++. ...+-.++.+.+.+|++|+|++.-.....+... ..|.+.++.+
T Consensus 5 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~ 81 (209)
T 2ql3_A 5 GPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQT---VPLMTREPMV 81 (209)
T ss_dssp EEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEEE---EEEEEECCEE
T ss_pred eeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCceE---EEeecCceEE
Confidence 4567887544332 2 2211 12346765442 345678899999999999999864322122111 1122223222
Q ss_pred EEEEEEeeeeeeecCC-CCCcCCc---cEEEecHHHH-HHHHHHHHhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEEc
Q 016702 171 VGEVQLAANFCLLALP-GIKADQL---KRVLSHPQAL-ASSDIVLTQLGV--A-RENVDDTASAAQYVASNGLRDAGAVA 242 (384)
Q Consensus 171 ~gEi~l~I~h~Ll~~~-g~~l~~I---~~VySHpqAl-~QC~~fL~~~~~--~-~i~~~STA~AA~~v~~~~~~~~AAIa 242 (384)
..+-.|-|...+ ..+++++ .-|...+... .+..+|+.+.+. . ...++|...+.++++.+ ...|+.
T Consensus 82 ----v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi~~l 154 (209)
T 2ql3_A 82 ----VLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRG---LGWTLL 154 (209)
T ss_dssp ----EEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHT---SCBEEE
T ss_pred ----EEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcC---CeEEEe
Confidence 234445454433 3444444 3443322222 345566766553 2 35667777777777775 234454
Q ss_pred CH
Q 016702 243 SA 244 (384)
Q Consensus 243 s~ 244 (384)
+.
T Consensus 155 p~ 156 (209)
T 2ql3_A 155 LQ 156 (209)
T ss_dssp SC
T ss_pred eC
Confidence 43
No 136
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=31.02 E-value=59 Score=29.79 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=36.3
Q ss_pred ceEEEEECCCCcHHHHHHHHHC---C----CCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAY---P----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f---~----~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+|++ |.||.++.....++ | +++++++ ++.+++.++.+|++|.++++
T Consensus 131 Gk~i~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 131 GKRIAF--QKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp TCEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred CCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 468987 47998887665543 3 2456666 79999999999999998875
No 137
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=30.12 E-value=1e+02 Score=26.47 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=27.8
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeee
Q 016702 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 318 (384)
Q Consensus 286 Ktsl~f-~~~~~pGaL~~~L~~F~~~~INLtkIE 318 (384)
+.|++- ..++.||.+.++++.+++.|||+.-|-
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 556664 357899999999999999999999885
No 138
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=29.83 E-value=88 Score=28.41 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=71.5
Q ss_pred CcccC-CCCHHHHHHHHHhCCCCeEEEeeec---ccccc--c-----cccccccc-----cCCeEEEEEEEEeeeeeeec
Q 016702 121 CETVP-CDEFEDTFKAVELWLADKAVLPIEN---SSSGS--I-----HRNYDLLL-----RHRLHIVGEVQLAANFCLLA 184 (384)
Q Consensus 121 ~~~~~-~~s~~~Vf~aV~~g~~d~gVvPiEN---S~~G~--V-----~~tlDlL~-----~~~l~I~gEi~l~I~h~Ll~ 184 (384)
+++.+ +.+-..+++++.+|++|+++-=.-+ +..+. . .+.++.+. +.++.+.+-....-.+.|++
T Consensus 36 Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V 115 (275)
T 1sw5_A 36 AEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAV 115 (275)
T ss_dssp EEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEE
T ss_pred EEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEEE
Confidence 57777 7788999999999999998520000 00110 0 01222221 13788888775555577776
Q ss_pred CC------C-CCcCCccE------EEecHHHHH---HHHHHHHhcCCe--EEecCCHHHHHHHHHhcCCCCeEEEc-CHH
Q 016702 185 LP------G-IKADQLKR------VLSHPQALA---SSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAVA-SAR 245 (384)
Q Consensus 185 ~~------g-~~l~~I~~------VySHpqAl~---QC~~fL~~~~~~--~i~~~STA~AA~~v~~~~~~~~AAIa-s~~ 245 (384)
++ + .+++|++. +-+-+.-.. .-..+++.++.. .+..-+.+.+.+.+.++ ...++.+- +..
T Consensus 116 ~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~~ 194 (275)
T 1sw5_A 116 RADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNK-QVDVIPAYTTDS 194 (275)
T ss_dssp EHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTT-SCSEEEEETTCH
T ss_pred eHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcC-CCeEEEEeCCCc
Confidence 54 2 23445432 222222110 122266666542 23333555555555554 35555553 333
Q ss_pred HHHHcCCceeecc
Q 016702 246 AAEIYGLNILADR 258 (384)
Q Consensus 246 aA~~ygL~il~~~ 258 (384)
....|+|.+|...
T Consensus 195 ~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 195 RVDLFNLKILEDD 207 (275)
T ss_dssp HHHHTTEEECBCT
T ss_pred chhcCCeEEccCC
Confidence 3456899988754
No 139
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=29.57 E-value=54 Score=29.57 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=33.5
Q ss_pred eEEEEECCCCcHHHHHHHHHC---CC----CcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 98 VRISFKGLPGSFSEDAALKAY---PK----CETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 98 ~~Va~LGP~GTfS~~AA~~~f---~~----~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
.+|++ +.|+.++.....++ |- ++++ ..+..+++.++.+|++|.++++
T Consensus 106 k~i~~--~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~vDa~~~~ 159 (308)
T 2x26_A 106 HKVAF--QKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGNVDAWAIW 159 (308)
T ss_dssp SEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTSSSEEEEE
T ss_pred CEEee--eCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCCCCEEEec
Confidence 58998 56888876655443 31 2223 3458899999999999999875
No 140
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=27.27 E-value=2.1e+02 Score=23.99 Aligned_cols=115 Identities=7% Similarity=-0.032 Sum_probs=60.7
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCC-CC---CcCCcc--
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALP-GI---KADQLK-- 194 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~-g~---~l~~I~-- 194 (384)
.+++++ ++.+++.++.+|++|.++-++--+-+.. +. +.. ..-+......+++++ +. +++|++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~~-----~~~-s~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYTKERA-----EK-----YLY-AAPIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCCHHHH-----HH-----EEE-CCCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccChhhh-----hc-----eee-ccceecCceEEEEECCCCCCCCHHHhCCC
Confidence 467777 8999999999999998763322111100 00 000 011122234455544 22 234442
Q ss_pred EEEecH--HHHHHHHHHHHhcC---CeEEec-CCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 195 RVLSHP--QALASSDIVLTQLG---VARENV-DDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 195 ~VySHp--qAl~QC~~fL~~~~---~~~i~~-~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
+|.... .....-.+++..++ +..... .|..++.+++..+ .-.|+|+....+..
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~ 175 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDG--QFDYKIFDKIGVET 175 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcC--CceEEEecHHHHHH
Confidence 443322 11233344444443 444434 4888899988876 35677777765553
No 141
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=26.86 E-value=1e+02 Score=27.58 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=63.8
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC---CcCCcc--E
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 195 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~ 195 (384)
+++++.+ +.+++.++.+|++|+++.++.-+ .+. ...+... .-+......++++++. +++|++ +
T Consensus 99 v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~--------~~r--~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk~ 166 (291)
T 2yjp_A 99 VEFVLTE-AANRVEYVRSGKVDLILANFTQT--------PER--AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQT 166 (291)
T ss_dssp EEEEECC-GGGHHHHHHTTSCSEECSSCBCC--------HHH--HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTSE
T ss_pred EEEEEcc-HHHHHHHHhCCCeeEEEeCCCCC--------hHH--Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCCE
Confidence 5666665 68999999999999887533211 110 0011111 1122334456665542 234443 4
Q ss_pred EEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHH
Q 016702 196 VLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (384)
Q Consensus 196 VySHpqAl~QC~~fL~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ 249 (384)
|..- ..... ..||.+. +...+.+.+..++.+++..+ .-.|++.....+..
T Consensus 167 v~~~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 167 LLVN-KGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDG--RGVALAHDNALLWA 218 (291)
T ss_dssp EEEE-TTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEe-cCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcC--CccEEEecHHHHHH
Confidence 5432 22222 3455553 56778888999999998876 35677777665543
No 142
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=26.19 E-value=46 Score=28.26 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=26.8
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeee
Q 016702 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 318 (384)
Q Consensus 286 Ktsl~f-~~~~~pGaL~~~L~~F~~~~INLtkIE 318 (384)
+.+++- ...+.||.+.++++.|+++|||+..|-
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 445543 246789999999999999999999985
No 143
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=25.85 E-value=3.9e+02 Score=24.49 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=84.4
Q ss_pred CceEEEEEC-CCCcHHHHHHHHHC---C-CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc---cCC
Q 016702 96 TKVRISFKG-LPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHR 167 (384)
Q Consensus 96 ~~~~Va~LG-P~GTfS~~AA~~~f---~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~---~~~ 167 (384)
.+.+||+.+ |....-+. +.+.| | .++++.+++..+.-.|+.+|++|.+..=-. ..++.+. .++
T Consensus 4 ~~i~VG~~~~p~~~i~~~-v~~~l~k~Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~--------pyl~~~~k~~g~~ 74 (246)
T 4ef1_A 4 SVLKVGASPVPHAEILEH-VKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHV--------PFFNEAVKENDYD 74 (246)
T ss_dssp EEEEEEECTTTHHHHHHH-HHHHHHHTTEEEEEEECSSSSHHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHTCC
T ss_pred cEEEEEEeCCChHHHHHH-HHHHHHhcCCEEEEEEeCCchhHHHHHHCCCCCEEecCCH--------HHHHHHHHHCCCC
Confidence 467999983 43332223 33444 2 367899999999999999999999886322 1122221 356
Q ss_pred eEEEEEEEEeeeeeeecCCCCCcCCcc---EEEe--cHHHHHHHHHHHHhcCC------------------------eE-
Q 016702 168 LHIVGEVQLAANFCLLALPGIKADQLK---RVLS--HPQALASSDIVLTQLGV------------------------AR- 217 (384)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS--HpqAl~QC~~fL~~~~~------------------------~~- 217 (384)
|..+|.+.+.- ..|.+.+-.+++|++ +|.- -|--.+..-..|.+.|. ++
T Consensus 75 Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~ 153 (246)
T 4ef1_A 75 FVNAGAIHLEP-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFN 153 (246)
T ss_dssp EEEEEEEEECC-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEEE
T ss_pred EEEEeeccccc-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEEe
Confidence 77777765443 466776656788887 4432 23222334455655442 23
Q ss_pred EecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeec
Q 016702 218 ENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILAD 257 (384)
Q Consensus 218 i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~ 257 (384)
++. +.++.++.+.++ .-++|+|-+.. |-..||.....
T Consensus 154 ~el-~aaql~~al~dg-~vDaavin~n~-a~~agl~p~~d 190 (246)
T 4ef1_A 154 HES-DPAIMTTLYDNE-EGAAVLINSNF-AVDQGLNPKKD 190 (246)
T ss_dssp EEE-CGGGHHHHHHTT-CSSEEEECHHH-HHHTTCCHHHH
T ss_pred eec-CHHHHHHHhccc-cccEEEEechH-HHHcCCCCccC
Confidence 333 345555554432 23455555555 44558865433
No 144
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=25.83 E-value=78 Score=28.06 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=35.1
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCCCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..|||+-+ .|+-++...+.+....+++.. .+.++..++.+|++|.++++
T Consensus 96 Gk~Ia~~~-~~~~~~~ll~~ll~~~~~~~~-~~~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 96 GLRVAVPG-RHTTAYFLLSLYAQGFVPVEV-RYDRILPMVAQGEVEAGLII 144 (272)
T ss_dssp TCEEEESC-TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEEC
T ss_pred CCEEEeCC-CCchHHHHHHHHhccCceeec-ChHHHHHHHHCCCCCEEEEe
Confidence 46899875 355556655555655555544 34689999999999999987
No 145
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=24.49 E-value=38 Score=32.32 Aligned_cols=121 Identities=9% Similarity=-0.051 Sum_probs=70.5
Q ss_pred CceEEEEECCCC-cHHHHHHHHH-------C-CCCcccCCC-----CHHHHHHHHHhCCCCeEEEeeeccc--------c
Q 016702 96 TKVRISFKGLPG-SFSEDAALKA-------Y-PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSS--------S 153 (384)
Q Consensus 96 ~~~~Va~LGP~G-TfS~~AA~~~-------f-~~~~~~~~~-----s~~~Vf~aV~~g~~d~gVvPiENS~--------~ 153 (384)
..+|+++..|+| +..+.++..+ - |.+++..++ +..+++++|..|.+|++++..-... -
T Consensus 32 ~~l~~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~ 111 (365)
T 2hzl_A 32 VTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALA 111 (365)
T ss_dssp CEEEEEESSCTTCTTTTHHHHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHT
T ss_pred eEEEEeccCCCCCCchhHHHHHHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccChhHhhh
Confidence 568999999988 5445554432 1 234444333 4689999999999999998742211 0
Q ss_pred cccccc------------------cc-ccccCCeEEEEEEEEeeeeeeecCCC-CCcCCcc--EEEecHHHHHHHHHHHH
Q 016702 154 GSIHRN------------------YD-LLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLT 211 (384)
Q Consensus 154 G~V~~t------------------lD-lL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqAl~QC~~fL~ 211 (384)
+..... ++ ++.+.++++.+-.....++....+++ .+++|++ +|..-| --..+++
T Consensus 112 ~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~~pI~s~~DLkG~KiR~~~----~~~~~~~ 187 (365)
T 2hzl_A 112 AAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVGG----FAGKVME 187 (365)
T ss_dssp TCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECCT----THHHHHH
T ss_pred hcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccCCCcccceeecCCCCChHHhCCCEEecCC----cHHHHHH
Confidence 111110 11 12345777777655554443323333 3567777 665543 2356788
Q ss_pred hcCCeEEec
Q 016702 212 QLGVARENV 220 (384)
Q Consensus 212 ~~~~~~i~~ 220 (384)
..|+..++.
T Consensus 188 ~lGa~pv~~ 196 (365)
T 2hzl_A 188 RLGVVPQQI 196 (365)
T ss_dssp TTTCEEECC
T ss_pred HcCCcceec
Confidence 888876654
No 146
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=24.20 E-value=61 Score=29.31 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=50.6
Q ss_pred ceEEEEECCCCcHHHHHHHHHCCC----CcccCCCCHHHHHHHHHh--CCCCeEEEeeeccccccccccccccc----cC
Q 016702 97 KVRISFKGLPGSFSEDAALKAYPK----CETVPCDEFEDTFKAVEL--WLADKAVLPIENSSSGSIHRNYDLLL----RH 166 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f~~----~~~~~~~s~~~Vf~aV~~--g~~d~gVvPiENS~~G~V~~tlDlL~----~~ 166 (384)
..+||+ ..|+..+....+.+++ ...+.+.+.++.+++|.+ |++|+.+..-. +++.+. ..
T Consensus 170 g~~vg~--~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~---------~~~~~~~~~~~~ 238 (294)
T 2rc8_A 170 GFRFGT--VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKA---------LLDYEVSIDADC 238 (294)
T ss_dssp TCCEEC--BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHH---------HHHHHHHTCSSS
T ss_pred CeEEEE--EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecHH---------HHHHHHhhCCCC
Confidence 457887 5688777766666643 234578999999999999 99999887521 112111 12
Q ss_pred CeEEEEEEEEeeeeeeecCCC
Q 016702 167 RLHIVGEVQLAANFCLLALPG 187 (384)
Q Consensus 167 ~l~I~gEi~l~I~h~Ll~~~g 187 (384)
++.++++..-+....++.+++
T Consensus 239 ~l~~~~~~~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 239 KLLTVGKPFAIEGYGIGLPPN 259 (294)
T ss_dssp CEEECSCCEEEEEECCEECTT
T ss_pred CEEEcCCcccccceEEEecCC
Confidence 466666544444455555554
No 147
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=24.19 E-value=58 Score=27.58 Aligned_cols=34 Identities=32% Similarity=0.244 Sum_probs=28.4
Q ss_pred ceEEEEE-EeCCCcchHHHHHHHHHhCCceeeeee
Q 016702 285 FKTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 318 (384)
Q Consensus 285 ~Ktsl~f-~~~~~pGaL~~~L~~F~~~~INLtkIE 318 (384)
.|.|++- ..++.||.+.++++.+++.|||+.-|-
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 3677775 357899999999999999999997774
No 148
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=24.16 E-value=1.4e+02 Score=27.60 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=52.0
Q ss_pred CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccccCCeEEEEEEEEeeeeeeecCCCC----CcCCcc--
Q 016702 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK-- 194 (384)
Q Consensus 121 ~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~-- 194 (384)
++++...+-.++.++|.+|++|+|+......+... -...++++++-+.-.-...++..++. +++|.+
T Consensus 40 Vei~~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~-------~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLkGK 112 (342)
T 4esw_A 40 IAILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAK-------ARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKGK 112 (342)
T ss_dssp EEEEEESSGGGHHHHHHHTSSSEEEEEHHHHHHHH-------HTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGTTC
T ss_pred EEEEeCCChHHHHHHHHcCCcCEEEecHHHHHHHH-------HCCCCeEEEEEeccCCcccccccccccccCCHHHhCCC
Confidence 67888899999999999999999987544222111 11245676665544333445543321 233433
Q ss_pred EEE-ecHHHHHHHHHHHHhcCC
Q 016702 195 RVL-SHPQALASSDIVLTQLGV 215 (384)
Q Consensus 195 ~Vy-SHpqAl~QC~~fL~~~~~ 215 (384)
+|. ...-....-+.+|+++++
T Consensus 113 ~ig~~~~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 113 RIGYVGEFGKIQVDELTKHYGM 134 (342)
T ss_dssp EEEESSSHHHHHHHHHHGGGTC
T ss_pred EEEecCCchHHHHHHHHHHcCC
Confidence 443 222334566788888753
No 149
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=24.11 E-value=61 Score=30.50 Aligned_cols=82 Identities=13% Similarity=-0.055 Sum_probs=50.2
Q ss_pred ceEEEEECCCCcHHHHHHHHHC-C--C-----CcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc----
Q 016702 97 KVRISFKGLPGSFSEDAALKAY-P--K-----CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---- 164 (384)
Q Consensus 97 ~~~Va~LGP~GTfS~~AA~~~f-~--~-----~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~---- 164 (384)
..+|+|-.|.+|..|.+...++ . + .+.++..+..+++.+|.+|++|.+++... ++..+.
T Consensus 126 gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~---------~~~~~~~~~p 196 (321)
T 3p7i_A 126 DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTE---------NLDKLKTSAP 196 (321)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHTHHHHCH
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechH---------HHHHHHHhCc
Confidence 4589987776665566665422 2 1 12345678999999999999999998632 122222
Q ss_pred --cCCeEEEEEEEEeeeeeeecCCC
Q 016702 165 --RHRLHIVGEVQLAANFCLLALPG 187 (384)
Q Consensus 165 --~~~l~I~gEi~l~I~h~Ll~~~g 187 (384)
..+++|.++...--.+.++++++
T Consensus 197 ~~~~~lrvl~~s~~~p~~~i~~~k~ 221 (321)
T 3p7i_A 197 EKLKELKVIWKSPLIPGDPIVWRKN 221 (321)
T ss_dssp HHHTTEEEEEECSCBCCCEEEEETT
T ss_pred chhccEEEEEEcCCCCCCceeeeCC
Confidence 13577776543222345556554
No 150
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=23.98 E-value=3e+02 Score=25.45 Aligned_cols=160 Identities=9% Similarity=-0.043 Sum_probs=82.0
Q ss_pred CceEEEEECCCC-cH-HHHHHH--HHCC-CCcccCCCCHHHHHHHHHhCCCCeEEEeeeccccccccccccccc-cCCeE
Q 016702 96 TKVRISFKGLPG-SF-SEDAAL--KAYP-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLH 169 (384)
Q Consensus 96 ~~~~Va~LGP~G-Tf-S~~AA~--~~f~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvPiENS~~G~V~~tlDlL~-~~~l~ 169 (384)
.+.+|++..-.. .. ++.++. +..| +++.++..+-..+++++.+|++|+..--.-+. ....++... +.++.
T Consensus 8 ~~I~ig~~~~~e~~~~~~i~~~~Le~~Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~~l~ 83 (309)
T 1r9l_A 8 ITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDKKFY 83 (309)
T ss_dssp CEECEEECSCGGGHHHHHHHHHHHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGGTEE
T ss_pred ceEEEeecCccHHHHHHHHHHHHHHHcCCCeEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCCcEE
Confidence 457888875222 21 122221 1223 25555544778899999999999986322221 122233222 23455
Q ss_pred EEEEEEEeeeeeeecCC------C-CCcCCcc----------------EEEecHHHHH---HHHHHHHhcCCe--EEecC
Q 016702 170 IVGEVQLAANFCLLALP------G-IKADQLK----------------RVLSHPQALA---SSDIVLTQLGVA--RENVD 221 (384)
Q Consensus 170 I~gEi~l~I~h~Ll~~~------g-~~l~~I~----------------~VySHpqAl~---QC~~fL~~~~~~--~i~~~ 221 (384)
..|....+-...|+.++ + .+++|++ +++.-|.... .-...|+.++.. ...+.
T Consensus 84 ~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~~~~ 163 (309)
T 1r9l_A 84 REGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQ 163 (309)
T ss_dssp ECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred EecccCCCceEEEEEchhhhhhcCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceEEcC
Confidence 55544334445566543 2 2467776 6666653321 224566666653 34443
Q ss_pred C-HH---HHHHHHHhcCCCCeEEE-cCHHHHHHc----CCceeeccc
Q 016702 222 D-TA---SAAQYVASNGLRDAGAV-ASARAAEIY----GLNILADRI 259 (384)
Q Consensus 222 S-TA---~AA~~v~~~~~~~~AAI-as~~aA~~y----gL~il~~~I 259 (384)
+ .+ .++..+.+.+....+.+ .+.-....| +|.+|...-
T Consensus 164 ~s~~~~~~~~~~A~~~g~~~v~~~w~P~~~~~~~~~g~dl~~Le~~~ 210 (309)
T 1r9l_A 164 GNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPF 210 (309)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCSS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeecCchHhhhccccCCceEeccCc
Confidence 3 32 12223333334555555 444455667 999877653
No 151
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=22.01 E-value=86 Score=29.10 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=37.7
Q ss_pred CCceEEEEECCCCcHHHHH----HH----HHCC-CCcccCCCCHHHHHHHHHhCCCCeEEEe
Q 016702 95 GTKVRISFKGLPGSFSEDA----AL----KAYP-KCETVPCDEFEDTFKAVELWLADKAVLP 147 (384)
Q Consensus 95 ~~~~~Va~LGP~GTfS~~A----A~----~~f~-~~~~~~~~s~~~Vf~aV~~g~~d~gVvP 147 (384)
..+++||++.-...+.-.. .. +..| .+++++..++++++.++.+|++|+++..
T Consensus 3 ~~~l~iG~~p~~~p~~~~~~~~~l~~~l~k~lG~~ve~~~~~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHcCCCCEEEEC
Confidence 3568999987665544221 11 1223 3677888999999999999999999864
No 152
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=21.74 E-value=85 Score=32.13 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=28.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 016702 289 IVFTLDEGPGVLFKALAVFALREINLTKIESRPQ 322 (384)
Q Consensus 289 l~f~~~~~pGaL~~~L~~F~~~~INLtkIESRP~ 322 (384)
+.|..|.+||+|.+.|+.+.. +-|+|-..=|-.
T Consensus 436 ~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~ 468 (514)
T 1tdj_A 436 YSFEFPESPGALLRFLNTLGT-YWNISLFHYRSH 468 (514)
T ss_dssp EEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCT
T ss_pred EEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCC
Confidence 778999999999999999975 577777777764
No 153
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=21.35 E-value=1.1e+02 Score=28.86 Aligned_cols=161 Identities=11% Similarity=0.022 Sum_probs=93.8
Q ss_pred CCCceEEEEECCCCcHHHHHHHHHC--------CCCcccC---CCCHHHHHHHHHhCCCCeEEEeee-------------
Q 016702 94 DGTKVRISFKGLPGSFSEDAALKAY--------PKCETVP---CDEFEDTFKAVELWLADKAVLPIE------------- 149 (384)
Q Consensus 94 ~~~~~~Va~LGP~GTfS~~AA~~~f--------~~~~~~~---~~s~~~Vf~aV~~g~~d~gVvPiE------------- 149 (384)
-...+|++.-.|+|+..++++.++. |.+++.| .-+-.+++++|..|.+|.+++..-
T Consensus 13 ~a~~lr~a~~~~~~~~~~~~~~~fa~~Vee~s~G~i~v~p~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v~~ 92 (326)
T 3fxb_A 13 GRDTWRYAFEEAMTDVQGVYAQKFKEEIEANSDHEIQLFPYGTLGESADIMEQTQDGILQFVDQSPGFTGSLIPEAQVFF 92 (326)
T ss_dssp --CCCEEECSSCTTSHHHHHHHHHHHHHHHSSSCCCEEECTTSSCSHHHHHHHHHHTSCSEEECCHHHHTTTSGGGGGGG
T ss_pred cccEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHhCCCeeEEEecchhhhhhCcchHHhc
Confidence 3467899999999999999887653 2344333 236689999999999999987421
Q ss_pred ------ccc-------ccc--cccccc-ccccCCeEEEEEEEEeeeeeeecCCCCCcCCcc--EEEecHHHHHHHHHHHH
Q 016702 150 ------NSS-------SGS--IHRNYD-LLLRHRLHIVGEVQLAANFCLLALPGIKADQLK--RVLSHPQALASSDIVLT 211 (384)
Q Consensus 150 ------NS~-------~G~--V~~tlD-lL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~--~VySHpqAl~QC~~fL~ 211 (384)
|.. .|. +.+.++ .+.+.++++.+-....-.|..-.+|=.+++|++ +|..-+-+ --.++++
T Consensus 93 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~G~~~~~~~kpI~s~~DlkGlKiR~~~~~--~~~~~~~ 170 (326)
T 3fxb_A 93 VPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVAMTTKTPVTTCSDLDEVKFRVMTNP--LLVESYK 170 (326)
T ss_dssp STTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEEEEESSCCSSGGGSTTCEEEECSCH--HHHHHHH
T ss_pred CCeecCCHHHHHHHHHcCcHHHHHHHHHHHHHcCeEEEEEecCCceEEecCCCCCChHHhCCCEEEecCCH--HHHHHHH
Confidence 110 111 122222 233468888887777766533333334567776 55554322 2245677
Q ss_pred hcCCeEEecC--CHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccccC
Q 016702 212 QLGVARENVD--DTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQD 261 (384)
Q Consensus 212 ~~~~~~i~~~--STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~D 261 (384)
..|+..++.+ ..-.|. ..+ --.++..+.....-+++.=+.+.+-.
T Consensus 171 alGa~pv~m~~~Evy~AL---q~G--vvDg~e~~~~~~~~~~~~Ev~ky~~~ 217 (326)
T 3fxb_A 171 AFGATPTPLPWGEVYGGL---QTN--VIQGQENPTFFLYSTKIYEVTDYITY 217 (326)
T ss_dssp HHTSEEEECCGGGHHHHH---HTT--SCCEEEEEHHHHHHTTGGGSCSEEEE
T ss_pred HcCCeeeecCHHHHHHHH---HcC--CcceEecCHHHHHhccHhhhcceeEE
Confidence 7788766543 333333 332 23466666665555566444444443
No 154
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.08 E-value=85 Score=23.88 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=30.0
Q ss_pred EEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhc
Q 016702 196 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASN 233 (384)
Q Consensus 196 VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~ 233 (384)
|=.++......+.+|.+.+.....+.|..+|.+.+.+.
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~ 49 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF 49 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc
Confidence 33577777888899988888888888888888887765
No 155
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.58 E-value=2.8e+02 Score=21.01 Aligned_cols=109 Identities=10% Similarity=0.023 Sum_probs=60.3
Q ss_pred EEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHHHHHcCCceeeccccC-CCCCeeEEEEEee
Q 016702 196 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQD-EPDNITRFLVLAR 274 (384)
Q Consensus 196 VySHpqAl~QC~~fL~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~D-~~~N~TRF~vi~~ 274 (384)
|=.++......+.+|.+.+.+...+.|..+|.+.+.+.. + ...|.........|+.++.. |.. .....+.+++++.
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlii~d~~l~~~~g~~~~~~-l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 13 VDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF-S-GVVLLDIMMPGMDGWDTIRA-ILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC-C-EEEEEESCCSSSCHHHHHHH-HHHTTCCTTEEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC-C-CEEEEeCCCCCCCHHHHHHH-HHhhcccCCCCEEEEEC
Confidence 334677778888889888888777888888888777642 3 44443322222233333332 322 2344688999987
Q ss_pred CCCCCCCC--CCceEEEEEEeCCCcchHHHHHHHH
Q 016702 275 DPIIPRTD--KLFKTSIVFTLDEGPGVLFKALAVF 307 (384)
Q Consensus 275 ~~~~~~~~--~~~Ktsl~f~~~~~pGaL~~~L~~F 307 (384)
........ -..-..-++.-|-.+..|...|...
T Consensus 90 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 90 KNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp TTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 64322111 0112233344455566666666554
No 156
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=20.47 E-value=86 Score=26.12 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=34.0
Q ss_pred EEEEECCCCcHHHHHHHHHC---CCC-------cccCCCCHHHHHHHHHhCCCCeEEEeee
Q 016702 99 RISFKGLPGSFSEDAALKAY---PKC-------ETVPCDEFEDTFKAVELWLADKAVLPIE 149 (384)
Q Consensus 99 ~Va~LGP~GTfS~~AA~~~f---~~~-------~~~~~~s~~~Vf~aV~~g~~d~gVvPiE 149 (384)
+|+...|.++-+..++...| +-. ......+...+.+.|.+|+++.|++|.-
T Consensus 106 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~i~~~~~~ 166 (231)
T 1atg_A 106 HIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALA 166 (231)
T ss_dssp CEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEGG
T ss_pred EEEecCCCCCchhHHHHHHHHHCCCcccccccceEEecCCHHHHHHHHHcCCCCEEEEEHH
Confidence 78888787443333322222 210 2345678999999999999999999853
No 157
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=20.46 E-value=91 Score=28.46 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=38.5
Q ss_pred eEEEEECCCCcHHHHHHHHH-CCCCcccCC-CCHHHHHHHHHhCCCCeEEE
Q 016702 98 VRISFKGLPGSFSEDAALKA-YPKCETVPC-DEFEDTFKAVELWLADKAVL 146 (384)
Q Consensus 98 ~~Va~LGP~GTfS~~AA~~~-f~~~~~~~~-~s~~~Vf~aV~~g~~d~gVv 146 (384)
+|||+. .||.-+..+.+. |++.+...+ .+..+++.++.+|++|.+|.
T Consensus 113 krVGvd--~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLD--SRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEE
Confidence 799996 788888776653 455555566 88999999999999999999
Done!