RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016702
(384 letters)
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
tepidum TLS, structural genomics, PSI-2, protein
structure initiative; HET: PHE; 2.30A {Chlorobium
tepidum tls}
Length = 283
Score = 390 bits (1004), Expect = e-136
Identities = 129/296 (43%), Positives = 169/296 (57%), Gaps = 25/296 (8%)
Query: 93 NDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSS 152
N T I+++G PG++SE AAL+ E +PC+ F+D F AV AD AV+PIENS
Sbjct: 2 NAMTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58
Query: 153 SGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALA-SSDIVLT 211
GSIH+NYDLLLR + I+ E + CLL LPG + + +SHPQAL + T
Sbjct: 59 GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFAT 118
Query: 212 QLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLV 271
+ E DTA +A+ VA + + A A+AS RA E+YGL+IL + + DE NITRF
Sbjct: 119 HPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178
Query: 272 LARDPIIPRTDKLF-------KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK 324
+A + + KTSIVF L G LF+ALA FALR I+LTKIESRP RK
Sbjct: 179 IAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK 238
Query: 325 RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPM 380
+ F+YLFY DF D NAL +L+EFAT ++VLG Y +
Sbjct: 239 KA--------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
midwest center for ST genomics, protein structure
initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
aurescens}
Length = 313
Score = 344 bits (886), Expect = e-118
Identities = 86/291 (29%), Positives = 134/291 (46%), Gaps = 21/291 (7%)
Query: 96 TKVRISFKGLPGSFSEDAALKAY--PKCETVPCDEFEDTFKAVELWLADKAVLPIENSSS 153
+ V +F G G+F+E A ++ +PC + V AD A++PIENS
Sbjct: 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVE 64
Query: 154 GSIHRNYDLLLR-HRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212
G + D + L I+ E + F L+A PG++ +KR+ +H A A + + +
Sbjct: 65 GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124
Query: 213 L--GVARENVDDTASAAQYVASN-GLRDAGAVASARAAEIYGLNILADRIQDEPDNITRF 269
TA++A + + +A A AAE GLN+LA+ I D PD +TRF
Sbjct: 125 HLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRF 184
Query: 270 LVLARDPIIPRTDKLFKTSIVFTL-DEGPGVLFKALAVFALREINLTKIESRPQRKRPLR 328
++++R +P KT++V L ++ PG L + L FA R +NL++IESRP +
Sbjct: 185 ILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL-- 242
Query: 329 VVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYP 379
Y F ID + D R +AL L + R LG Y
Sbjct: 243 ------------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYA 281
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
(PDT), staphylococcus aureu aureus MU50, structural
genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
SCOP: c.94.1.1 d.58.18.3
Length = 267
Score = 337 bits (867), Expect = e-116
Identities = 67/283 (23%), Positives = 120/283 (42%), Gaps = 22/283 (7%)
Query: 98 VRISFKGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGS 155
+++ + G G+FS A + + + E P + KAV V+PIENS G+
Sbjct: 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT 63
Query: 156 IHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGV 215
I+ D L + + GE++L NF L +K+V S A++ + + Q
Sbjct: 64 INIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQF 123
Query: 216 ARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARD 275
+ VD T + + A+A + E YG + I+D P N+TRFLV+
Sbjct: 124 DYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQ 179
Query: 276 PIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNN 335
+ ++ + + PG+L L FAL INL+ IESRP + +
Sbjct: 180 QQFD-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--------- 229
Query: 336 GTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCY 378
Y F++ ++++ + + L+ + ++G +
Sbjct: 230 -----GMYRFFVQADSAITTD-IKKVIAILETLDFKVEMIGAF 266
>3luy_A Probable chorismate mutase; structural genomics, APC38059,
3-phenylp PSI-2, protein structure initiative; HET: PPY;
2.00A {Bifidobacterium adolescentis}
Length = 329
Score = 331 bits (851), Expect = e-113
Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 37/304 (12%)
Query: 96 TKVRISFKGLPGSFSEDAALKAYPK--------CETVPCDEFEDTFKAVELWLADKAVLP 147
+ ++ + G G+F+ AA+ A + + +P D+ A + ++
Sbjct: 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHG-DGWGIVA 63
Query: 148 IENSSSGSIHRNYDLLLRHR-LHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASS 206
EN+ G + N D L+ + L V + F G + + +HP LA
Sbjct: 64 WENNVEGYVVPNLDALIDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQC 123
Query: 207 DIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNI 266
+ + ++ + A+A + + A A E+Y + + IQD
Sbjct: 124 KRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAICGELYDITRIGTAIQDYQGAA 179
Query: 267 TRFLVLARDPIIPRTDKLF---------KTSIVFTLDEGPGVLFKALAVFALREINLTKI 317
T FLVL+ + R + L GPGVL L VF +N+T
Sbjct: 180 TDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239
Query: 318 ESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGC 377
SRP + R Y F + +A+ + R ++AL + E + + L
Sbjct: 240 ISRPIKGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAV 285
Query: 378 YPMD 381
YP
Sbjct: 286 YPRR 289
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 94.8 bits (235), Expect = 1e-21
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 23/136 (16%)
Query: 246 AAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALA 305
AA + +L+ ++ D + +++ S++F+L E G L K L
Sbjct: 2 AAVVLENGVLSRKLSDFGQETSYIE--------DNSNQNGAISLIFSLKEEVGALAKVLR 53
Query: 306 VFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 365
+F +INLT IESRP R +Y F+ + P + + L
Sbjct: 54 LFEENDINLTHIESRPSRLNK--------------DEYEFFTYLDKR-TKPVLGSIIKSL 98
Query: 366 QEFATFLRVLGCYPMD 381
+ +
Sbjct: 99 RNDIGATVHELSRDKE 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 4e-07
Identities = 56/339 (16%), Positives = 106/339 (31%), Gaps = 69/339 (20%)
Query: 73 CKDLISLPKPLTVADFTVTP-NDGTKVRIS---FKGLPGSFSEDAA-------LKAYPKC 121
KD++S+ + V +F D K +S + S + L + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE- 76
Query: 122 ETVPCDEF-EDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANF 180
E V +F E+ + +L + E + R Y + R RL+ +V F
Sbjct: 77 EMV--QKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMY-IEQRDRLYNDNQV-----F 126
Query: 181 CLLALPGIKA-DQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAG 239
+ ++ +L++ L L + VL GV S +VA +
Sbjct: 127 AKYNVSRLQPYLKLRQAL---LELRPAKNVLID-GVL-------GSGKTWVALDVCLSYK 175
Query: 240 AVASARAAEIYGLNI-LADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPG 298
V +I+ LN+ + + + + + L R+D ++I +
Sbjct: 176 -VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--SNIKLRIHSI-- 230
Query: 299 VLFKALAVFALREINLTKIESRPQRKRPLRVVDD-SNNGTAKYFDY----LF------YI 347
+ L ++ + L V+ + N F+ L
Sbjct: 231 ------------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 348 DF--EASMADPRAQNALGHLQEFAT---FLRVLGCYPMD 381
DF A+ + L L+ L C P D
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Score = 50.2 bits (119), Expect = 9e-07
Identities = 58/380 (15%), Positives = 109/380 (28%), Gaps = 99/380 (26%)
Query: 73 CKDLISLPKP-LT---VADFTVTPNDGTKVRISFKGLPGS-------FSEDA-------- 113
CKD+ +PK L+ + ++ + + F L F E+
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 114 --ALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIH---RNYDLLLRHRL 168
+K + ++ + + L+ D V N S + R L LR
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD--RLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 169 HIV-------GEVQLAANFC-----LLALPG----IKADQLKR---VLSHPQALASS-DI 208
+++ G+ +A + C + + VL Q L D
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 209 VLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITR 268
T N+ + Q L+ L +L + +Q+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------LLVLLN-VQN-AKAWNA 261
Query: 269 F------LVLARDPIIPRTDKLF----------KTSIVFTLDEGPGVLFKALAVFALREI 312
F L+ R + TD L S+ T DE +L K L
Sbjct: 262 FNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------- 311
Query: 313 NLTKIESRPQRKR--PLRV------VDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGH 364
+ + + P R+ + D T + ++ + +++L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTII-----ESSLNV 365
Query: 365 LQ--EFATFLRVLGCYPMDA 382
L+ E+ L +P A
Sbjct: 366 LEPAEYRKMFDRLSVFPPSA 385
Score = 46.4 bits (109), Expect = 1e-05
Identities = 62/410 (15%), Positives = 122/410 (29%), Gaps = 120/410 (29%)
Query: 49 SVIKSADNQNTGKSSNVNDVPGKLCKDLISLPK----------PLTVADFTVTPNDGTKV 98
S IK+ Q + + + +L D K L A + P
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--- 152
Query: 99 RISFKGLPGS----FSEDAALKAYPKCE--------TV-PCDEFEDTFKAVE-LWL-ADK 143
+ G+ GS + D L +C+ + C+ E + ++ L D
Sbjct: 153 -VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 144 AVLPIENSSSGSIHRNYDL------LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVL 197
+ SS R + + LL+ + + CLL L +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVL-----LNV---- 253
Query: 198 SHPQALASSDI-----VLTQLGVARENVDDTASAAQYV------ASNGLRDAGAVA-SAR 245
+ +A + ++ + T+ + V D SAA S L + +
Sbjct: 254 QNAKAWNAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 246 AAEI--------------YGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVF 291
+ L+I+A+ I+D + + D + + ++S+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSLN- 364
Query: 292 TLDEGPGV---LFKALAVFALRE-INLT----------KIESRPQ------RKRPLRVVD 331
L+ P +F L+VF ++ I+S K L V
Sbjct: 365 VLE--PAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEK 419
Query: 332 DSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 381
T Y++ + + + + AL H + + + D
Sbjct: 420 QPKEST--ISIPSIYLELKVKLEN---EYAL-H-RSIVDHYNIPKTFDSD 462
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 54/388 (13%), Positives = 103/388 (26%), Gaps = 130/388 (33%)
Query: 75 DLISLPKPLTVADFTVTPNDGTKVRISFKGLP-GSFSEDAALKAYPKCETVPCDEFEDTF 133
D S +PLT+ + G+ + +P SF + L+ ++F
Sbjct: 2 DAYST-RPLTL-------SHGS-LEHVLL-VPTASFFIASQLQ----------EQFNKIL 41
Query: 134 KAV--ELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKAD 191
D+ P E L+ + ++ V+ + G
Sbjct: 42 PEPTEGFAADDEPTTPAE------------LVGKFLGYVSSLVEPSK-------VGQFDQ 82
Query: 192 QLKRVLSH--PQALASSDI--VLTQLGVARENVDDTASAAQYVASNGLRDAGAVA----- 242
L L+ L +DI + +L + D T + + N + A +A
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKL---LQENDTTLVKTKELIKNYIT-ARIMAKRPFD 138
Query: 243 ----SA--RAAE-----IYGL-----NI------LADRIQDEPDNITRFLV--------L 272
SA RA + + N L D Q + + L
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 273 ARDPIIPRTDKLFKTSI-----VFTLDEGPGVLFKALAVFALREINLT----------KI 317
R +K+F + + P + + I + +
Sbjct: 199 IRTT--LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 318 ESRPQRKRP-LR--------VV-----------DDSNNGTAKYFDYLFYIDFEASMADPR 357
P R L+ +V + K LF+I A P
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 358 A-------QNALGHLQEFATF-LRVLGC 377
+++L + + + L +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNL 344
Score = 42.7 bits (100), Expect = 2e-04
Identities = 56/296 (18%), Positives = 94/296 (31%), Gaps = 95/296 (32%)
Query: 2 ALECVAVLGWGDSGSRASGLVFNGVRNSNRTP---RKCVCRG-GF-------SGLSGDSV 50
+ + VL + G R + N++ P + G S L+ + V
Sbjct: 296 VRKAITVLFF--IGVRCY-EAY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 51 IKSADNQNTGKS-------SNVND-----VPG------KLCKDLISLPKPLTVADFTVTP 92
+ N+ S VN V G L L P + D + P
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRIP 408
Query: 93 NDGTKVRISFKGLPGS--F-S---EDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVL 146
K++ S + LP + F S A+ + + D ++ + A +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPAS-------DLINKDLVKNNVS----FNAKDIQI 457
Query: 147 PIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLKRVLSH---- 199
P+ ++ GS R + R+ V C++ LP + Q K +H
Sbjct: 458 PVYDTFDGSDLRVLSGSISERI-----VD-----CIIRLP-VKWETTTQFK--ATHILDF 504
Query: 200 -PQALASSDI-VLTQLGVARENVDDTASAAQYVASNGLR--DAGAVASARAAEIYG 251
P +S + VLT N D T G+R AG + + YG
Sbjct: 505 GP--GGASGLGVLTH-----RNKDGT----------GVRVIVAGTLDINPDDD-YG 542
Score = 42.0 bits (98), Expect = 3e-04
Identities = 53/338 (15%), Positives = 95/338 (28%), Gaps = 140/338 (41%)
Query: 21 LVFNGVRNSNRTPRKCVCRGGFSGLSGDSVIKSADNQNTGKSS--NVNDVPGKLCKDLI- 77
L F GVR P + L + S +N S +++++ + +D +
Sbjct: 303 LFFIGVRCYEAYPN--------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 78 ----SLP--KPLTVA------DFTVTPNDGTKVRISFKGLPGS-FSEDAAL---KAYPKC 121
LP K + ++ + V+ G P S + + L KA
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVS------------GPPQSLYGLNLTLRKAKAPSGL 402
Query: 122 ET--VPCDE----FEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQ 175
+ +P E F + F LP+ + H +
Sbjct: 403 DQSRIPFSERKLKFSNRF------------LPV----ASPFHSHL--------------- 431
Query: 176 LAANFCLLALPGIKADQLKRVLSHPQALASSDIVLT--QLGVARENVDDTASAAQYVASN 233
L A I D L +++ + + V DT +
Sbjct: 432 LVP-----ASDLINKD-----------LVKNNVSFNAKDIQIP---VYDTF--------D 464
Query: 234 GLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLV--LARDPII-PRTDKLFKTSIV 290
G D ++ +I+ +V + R P+ T + T I
Sbjct: 465 G-SD---------------------LRVLSGSISERIVDCIIRLPVKWETTTQFKATHI- 501
Query: 291 FTLDEGPGVLFKALAVFA-------LREINLTKIESRP 321
LD GPG + +R I ++ P
Sbjct: 502 --LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 38.9 bits (90), Expect = 0.003
Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 104/277 (37%)
Query: 80 PKPLTVADFTVTPNDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFK----- 134
P LT+ F G ++R ++ + D LK + + TF+
Sbjct: 1669 PVNLTIH-FG--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 135 ------------AVE--LW--LADKAVLPI----------ENS----SSGSIHRNYDL-- 162
+E + L K ++P E + + + +
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM----SIES 1781
Query: 163 ---LLRHRLHIVGE-VQLAA--------NFCLLAL-PG-----IKADQLKRVLSHPQALA 204
++ +R G +Q+A N+ ++A+ PG + L+ V+ +
Sbjct: 1782 LVEVVFYR----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--RVGK 1835
Query: 205 SSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPD 264
+ ++ + NV++ QYVA+ G D A+ + LN + ++Q
Sbjct: 1836 RTGWLVE---IVNYNVENQ----QYVAA-G--DLRAL--DTVTNV--LNFI--KLQ---- 1875
Query: 265 NITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLF 301
I + + +L+E G LF
Sbjct: 1876 KI----------------DIIELQKSLSLEEVEGHLF 1896
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.9 bits (77), Expect = 0.050
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 36/101 (35%)
Query: 258 RI------QDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALRE 311
RI D +FLV+A +P F+ I L P E
Sbjct: 146 RIVSGLELSDTKQKGKKFLVIAYEP--------FEN-IAIEL---PP-----------NE 182
Query: 312 INLTKIESRPQRKRPLRVVDDSNNGTAKYFD---YLFYIDF 349
I + S D N ++D L+Y+ F
Sbjct: 183 I----LFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQF 219
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 27.5 bits (62), Expect = 8.3
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 207 DIVLTQLGVARENVDDTASAAQYVASNGL 235
+++L Q + R+ + D A ++ +
Sbjct: 275 NVLLIQKSILRDALSDL--ALHFLNKMKI 301
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,821,018
Number of extensions: 359321
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 19
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)