RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 016702
         (384 letters)



>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 184

 Score =  151 bits (383), Expect = 3e-45
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 99  RISFKGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGSI 156
           ++ + G  G+FS  A  + + + E    P     +  KAV        V+PIENS  G+I
Sbjct: 2   QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61

Query: 157 HRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVA 216
           +   D L +  +   GE++L  NF L          +K+V S   A++ +   + Q    
Sbjct: 62  NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 121

Query: 217 RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDP 276
            + VD T  +   +         A+A   + E YG   +   I+D P N+TRFLV+    
Sbjct: 122 YDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 177

Query: 277 IIPR 280
              +
Sbjct: 178 QFDQ 181


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
           domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 86.7 bits (215), Expect = 5e-22
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 287 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFY 346
             ++  + + PG+L   L  FAL  INL+ IESRP + +                 Y F+
Sbjct: 3   MFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--------------GMYRFF 48

Query: 347 IDFEASMADPRAQNALGHLQEFATFLRVLGCY 378
           +  ++++     +  +  L+     + ++G +
Sbjct: 49  VQADSAITTD-IKKVIAILETLDFKVEMIGAF 79


>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 79.9 bits (197), Expect = 2e-19
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 16/98 (16%)

Query: 282 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYF 341
           ++    S++F+L E  G L K L +F   +INLT IESRP R                  
Sbjct: 12  NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------D 57

Query: 342 DYLFYIDFEASMADPRAQNALGHL-QEFATFLRVLGCY 378
           +Y F+   +     P   + +  L  +    +  L   
Sbjct: 58  EYEFFTYLDK-RTKPVLGSIIKSLRNDIGATVHELSRD 94


>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein
           TlpA, soluble domain {Bradyrhizobium japonicum [TaxId:
           375]}
          Length = 176

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 76  LISLPKPLTVADFTVTPNDGTKVRIS-FKG 104
           L     PL + D      DG   ++S F+G
Sbjct: 27  LTMASAPLKLPDLAFEDADGKPKKLSDFRG 56


>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 24.7 bits (53), Expect = 9.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 314 LTKIESRPQRKRPLRVVDDSNNGTA 338
             +I       +P++VV D  NG A
Sbjct: 6   FKQIRDDIAMAKPMKVVVDCGNGVA 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,360,749
Number of extensions: 62128
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 5
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)