Query 016703
Match_columns 384
No_of_seqs 145 out of 163
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4675 Uncharacterized conser 100.0 7.7E-54 1.7E-58 409.2 18.0 264 45-342 3-272 (273)
2 PF03735 ENT: ENT domain; Int 99.9 3.9E-27 8.4E-32 188.2 9.3 72 50-122 1-72 (73)
3 PF09465 LBR_tudor: Lamin-B re 99.0 1.6E-10 3.5E-15 88.7 3.2 40 228-267 7-46 (55)
4 smart00743 Agenet Tudor-like d 98.2 1.6E-06 3.5E-11 65.3 4.2 54 228-282 4-59 (61)
5 smart00333 TUDOR Tudor domain. 97.1 0.00077 1.7E-08 49.5 4.2 46 227-278 3-49 (57)
6 cd04508 TUDOR Tudor domains ar 96.6 0.0036 7.7E-08 44.5 4.1 37 230-267 1-38 (48)
7 PF09038 53-BP1_Tudor: Tumour 96.4 0.0035 7.6E-08 55.4 3.8 41 226-267 2-42 (122)
8 PF06003 SMN: Survival motor n 94.5 0.045 9.8E-07 53.4 4.3 48 229-279 71-118 (264)
9 PLN00104 MYST -like histone ac 94.4 0.28 6.1E-06 51.7 10.2 58 228-287 55-119 (450)
10 KOG3026 Splicing factor SPF30 89.3 0.33 7.1E-06 47.7 3.2 37 228-264 92-128 (262)
11 PF11717 Tudor-knot: RNA bindi 89.0 0.75 1.6E-05 34.7 4.3 49 229-279 3-53 (55)
12 KOG4675 Uncharacterized conser 83.7 12 0.00027 37.5 10.7 38 217-254 173-210 (273)
13 PF05641 Agenet: Agenet domain 74.1 4.3 9.4E-05 31.6 3.5 50 230-280 4-61 (68)
14 PF15057 DUF4537: Domain of un 64.6 8.8 0.00019 33.6 3.8 36 230-266 1-36 (124)
15 PF15315 FRG2: Facioscapulohum 62.9 29 0.00063 32.9 7.0 47 46-92 111-158 (181)
16 PF14717 DUF4465: Domain of un 59.9 7.9 0.00017 36.4 2.8 42 239-280 104-152 (182)
17 TIGR02612 mob_myst_A mobile my 59.4 15 0.00034 33.4 4.5 47 56-103 3-49 (150)
18 COG3078 Uncharacterized protei 56.4 31 0.00067 32.3 5.9 53 49-102 96-156 (169)
19 PF07039 DUF1325: SGF29 tudor- 56.2 22 0.00047 31.6 4.8 43 229-271 74-117 (130)
20 PRK09618 flgD flagellar basal 55.1 20 0.00043 32.8 4.4 47 226-279 88-134 (142)
21 PF02828 L27: L27 domain; Int 46.4 49 0.0011 24.8 4.7 36 81-117 6-41 (56)
22 KOG4094 Uncharacterized conser 36.4 1.8E+02 0.0039 27.5 7.6 68 49-118 75-152 (178)
23 KOG1328 Synaptic vesicle prote 35.6 48 0.001 38.0 4.4 57 51-109 54-110 (1103)
24 KOG0432 Valyl-tRNA synthetase 33.8 40 0.00086 39.0 3.5 39 343-382 601-639 (995)
25 KOG2070 Guanine nucleotide exc 32.8 39 0.00085 37.0 3.1 30 353-382 244-273 (661)
26 PRK05244 Der GTPase activator; 31.8 1.1E+02 0.0023 29.1 5.5 51 50-100 96-153 (177)
27 PF01690 PLRV_ORF5: Potato lea 31.2 1E+02 0.0022 33.3 5.8 12 267-278 67-78 (465)
28 smart00454 SAM Sterile alpha m 31.0 1.5E+02 0.0032 21.3 5.1 52 49-105 8-61 (68)
29 KOG0738 AAA+-type ATPase [Post 30.6 1.8E+02 0.0039 31.5 7.4 37 347-383 185-227 (491)
30 PF07647 SAM_2: SAM domain (St 29.9 66 0.0014 24.0 3.1 53 48-105 7-62 (66)
31 PF07374 DUF1492: Protein of u 27.9 1.8E+02 0.004 24.2 5.8 49 49-105 47-95 (100)
32 cd01737 LSm16_N LSm16 belongs 27.1 1.2E+02 0.0026 24.4 4.2 54 226-279 2-61 (62)
33 PF04967 HTH_10: HTH DNA bindi 26.9 1E+02 0.0022 23.7 3.7 37 67-105 11-47 (53)
34 KOG0644 Uncharacterized conser 26.3 71 0.0015 37.1 3.8 38 229-266 981-1030(1113)
35 PF14772 NYD-SP28: Sperm tail 26.0 1.4E+02 0.0031 24.9 4.8 27 79-105 73-99 (104)
36 KOG1525 Sister chromatid cohes 25.8 6.7 0.00014 46.4 -4.2 48 222-269 982-1030(1266)
37 COG2944 Predicted transcriptio 25.1 1.1E+02 0.0024 26.8 4.0 35 84-123 49-83 (104)
38 COG0231 Efp Translation elonga 24.9 1.3E+02 0.0029 26.8 4.6 58 228-290 47-110 (131)
39 PF05918 API5: Apoptosis inhib 24.7 25 0.00053 38.5 0.0 8 318-325 544-551 (556)
40 PF11662 DUF3263: Protein of u 24.4 1.5E+02 0.0032 24.7 4.4 38 79-119 23-68 (77)
41 PRK06009 flgD flagellar basal 24.3 1.1E+02 0.0024 27.9 4.1 37 226-266 93-129 (140)
42 PF04220 YihI: Der GTPase acti 24.0 1.2E+02 0.0026 28.6 4.3 52 49-100 96-154 (169)
43 PF13812 PPR_3: Pentatricopept 23.9 1.9E+02 0.0041 18.0 4.2 30 60-93 2-32 (34)
44 PF02671 PAH: Paired amphipath 23.8 27 0.00058 25.1 0.0 23 349-372 18-40 (47)
45 KOG0484 Transcription factor P 23.7 53 0.0012 29.3 1.8 28 347-374 20-48 (125)
46 PF09548 Spore_III_AB: Stage I 23.5 4.1E+02 0.0089 24.1 7.7 60 40-100 63-126 (170)
47 PF14338 Mrr_N: Mrr N-terminal 22.3 1.9E+02 0.004 23.5 4.7 41 60-102 4-44 (92)
48 PF00567 TUDOR: Tudor domain; 22.2 74 0.0016 25.1 2.3 39 226-265 51-89 (121)
49 KOG2675 Adenylate cyclase-asso 21.0 3.4E+02 0.0073 29.5 7.3 56 61-116 132-205 (480)
50 PF08605 Rad9_Rad53_bind: Fung 21.0 1.2E+02 0.0026 27.3 3.6 35 231-267 14-48 (131)
51 PRK11546 zraP zinc resistance 20.8 1.6E+02 0.0034 27.1 4.3 40 58-108 48-87 (143)
52 KOG1924 RhoA GTPase effector D 20.5 1.5E+03 0.032 27.0 14.1 13 49-61 455-467 (1102)
No 1
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=100.00 E-value=7.7e-54 Score=409.18 Aligned_cols=264 Identities=42% Similarity=0.685 Sum_probs=217.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHH-HhhhhcCC
Q 016703 45 RMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIR-EWRKASGL 123 (384)
Q Consensus 45 r~~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iR-e~r~~gg~ 123 (384)
..++||+.+||+||++||++||+||+||+++||||||++||+||++|+||+|||+++++++.+|+.|.+|| +|+..+..
T Consensus 3 ~s~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~ 82 (273)
T KOG4675|consen 3 FSRDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKS 82 (273)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCch
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999 56655544
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC----CCC
Q 016703 124 QPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGL 199 (384)
Q Consensus 124 q~g~~~~~q~~hd~~psPt~~~srKkqKts~s~ps~~~g~psp~~~p~~qpsssa~k~g~~~~~k~kk~k~~~----~~~ 199 (384)
|--.+ ......+..|+|+.+.++|+||+.++++++.+.+.+|++++.+++. +.+.+++++ ..+
T Consensus 83 qe~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~ 149 (273)
T KOG4675|consen 83 QEWSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPV 149 (273)
T ss_pred hhhhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCC
Confidence 32111 1223467779999999999999999999999999999999877764 222222221 111
Q ss_pred CCCcccccCCCCCCCCCCCCCCcccCCCcccceeeeecCCCCCceeEEEee-ccCCCCceeeEecCCCCCCceeeeeccc
Q 016703 200 AGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITD-YNPNEGRHALVYDINTADETWEWVNLKE 278 (384)
Q Consensus 200 ~g~~~~~~r~~~~~~~~~~~~~~~~~~~LVGrrVkv~WPdDn~wYeg~Itd-Yn~~tg~H~LvYD~g~~~EtwEwVdL~e 278 (384)
+.|+ . ..+++|||++|+..|||++.|||++|++ |+...++|+|+||.++.+++|+||||++
T Consensus 150 ~~~~-------------n-----~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~ 211 (273)
T KOG4675|consen 150 SSWG-------------N-----VPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLRE 211 (273)
T ss_pred Cccc-------------c-----CCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCcccccccc
Confidence 1121 2 3346699999999999999999999999 5556679999999999999999999999
Q ss_pred CCccCccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016703 279 ISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK 342 (384)
Q Consensus 279 ~spedI~W~~e~pgi~~~~~~~~~g~g~~~~~~~~g~~~~~grgrg~~k~~k~~~~~qng~~~~ 342 (384)
|+||||+|+++++++..+.++.++|.|.++...+++.- .+||+|..+ |+.+++.|||.+++
T Consensus 212 I~p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~~~--~~~~~~~~~-~~~~~~~~ngg~~~ 272 (273)
T KOG4675|consen 212 ISPEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQSP--GARGRGPRT-RTGIPKTQNGGGRK 272 (273)
T ss_pred CCHHhccccCCCCCcccccCCCCCCcccccccCCccCc--cccCCCCcc-ccccccccCccccC
Confidence 99999999999999999999999999999998887733 235555544 78899999994443
No 2
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=99.94 E-value=3.9e-27 Score=188.25 Aligned_cols=72 Identities=57% Similarity=0.932 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 016703 50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG 122 (384)
Q Consensus 50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~gg 122 (384)
|+++||+||++||++||+||+||++ |||+||.|||+||++|+||||||++++++|.+|+.|++||+|+++++
T Consensus 1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~ 72 (73)
T PF03735_consen 1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence 6799999999999999999999976 99999999999999999999999999999999999999999998875
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.02 E-value=1.6e-10 Score=88.67 Aligned_cols=40 Identities=30% Similarity=0.676 Sum_probs=34.2
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~ 267 (384)
-+|.+|++|||+++-||+|.|++||..+.+|.|.|+||+.
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte 46 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE 46 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE
Confidence 3799999999999999999999999999999999999986
No 4
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.21 E-value=1.6e-06 Score=65.28 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=48.6
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecC--CCCCCceeeeecccCCcc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE 282 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~--g~~~EtwEwVdL~e~spe 282 (384)
.+|..|.++|++++.||+|+|+.++. ++++.|.|++ ...+|++++.+|+-+.+.
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 48999999999999999999999998 6789999999 778899999998887654
No 5
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.08 E-value=0.00077 Score=49.50 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=38.1
Q ss_pred CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecC-CCCCCceeeeeccc
Q 016703 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTADETWEWVNLKE 278 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~-g~~~EtwEwVdL~e 278 (384)
.-+|..|.+.| +|+.||.|+|++++.. +...|.|.| |+. |||...+
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~----~~v~~~~ 49 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNE----EVVPPSD 49 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCcc----EEEeHHH
Confidence 35788999999 9999999999999998 889999999 544 4664433
No 6
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.55 E-value=0.0036 Score=44.54 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=31.8
Q ss_pred cceeeeecCCCCCceeEEEeeccCCCCceeeEecC-CCC
Q 016703 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA 267 (384)
Q Consensus 230 GrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~-g~~ 267 (384)
|..|..+|++|+.||.|+|.++++ ++.-.|.|.| |+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~ 38 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNT 38 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCc
Confidence 567889999999999999999998 6777888888 554
No 7
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=96.39 E-value=0.0035 Score=55.43 Aligned_cols=41 Identities=20% Similarity=0.589 Sum_probs=33.9
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~ 267 (384)
.+|||.+|-.+|-+++-||.|+|+. +...++..|.+|||..
T Consensus 2 ~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~ 42 (122)
T PF09038_consen 2 SSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYE 42 (122)
T ss_dssp --STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-E
T ss_pred CcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcc
Confidence 5799999999999888889999999 5778899999999974
No 8
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=94.46 E-value=0.045 Score=53.36 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=38.3
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (384)
||-+|+..|=+|..||+|+|+..+...+.-.|+|+.-.-. |.|.|.+|
T Consensus 71 vGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL 118 (264)
T PF06003_consen 71 VGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDL 118 (264)
T ss_dssp TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhh
Confidence 9999999999999999999999999999888889875433 45555555
No 9
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=94.43 E-value=0.28 Score=51.66 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=44.9
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCC------CceeeEecCCCCCCce-eeeecccCCccCcccc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE------GRHALVYDINTADETW-EWVNLKEISPEDIKWE 287 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~t------g~H~LvYD~g~~~Etw-EwVdL~e~spedI~W~ 287 (384)
-||-+|.++|..|..||+|.|.+..... .+..|.|..-+.. | |||+...+....++..
T Consensus 55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrR--lDEWV~~~rLdls~~e~~ 119 (450)
T PLN00104 55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRR--LDEWVKLEQLDLDTVETV 119 (450)
T ss_pred ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCcc--HhhccCHhhccccccccc
Confidence 4999999999999999999999998733 3678888765433 5 7998888855545443
No 10
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=89.29 E-value=0.33 Score=47.68 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=32.9
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI 264 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~ 264 (384)
-||.||...|+||..||++.|.+..+.++.-+|.++-
T Consensus 92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~s 128 (262)
T KOG3026|consen 92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFAS 128 (262)
T ss_pred ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEee
Confidence 3899999999999999999999999988877777653
No 11
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=88.95 E-value=0.75 Score=34.67 Aligned_cols=49 Identities=31% Similarity=0.502 Sum_probs=37.2
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCceeeeecccC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI 279 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~EtwEwVdL~e~ 279 (384)
||-+|.++| .++.||+|.|.+-+...+ ...|.|.--+ .---|||+.+.|
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~n-kR~DeWV~~~~i 53 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWN-KRLDEWVPESRI 53 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTST-GCC-EEEETTTE
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCC-CCceeeecHHHc
Confidence 789999999 999999999999988664 5677787333 223389986654
No 12
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=83.75 E-value=12 Score=37.46 Aligned_cols=38 Identities=8% Similarity=-0.218 Sum_probs=31.7
Q ss_pred CCCCCcccCCCcccceeeeecCCCCCceeEEEeeccCC
Q 016703 217 NGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPN 254 (384)
Q Consensus 217 ~~~~~~~~~~~LVGrrVkv~WPdDn~wYeg~ItdYn~~ 254 (384)
....+++.....+++.++..|+-|+++|...+.-||..
T Consensus 173 ~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~ 210 (273)
T KOG4675|consen 173 RKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLR 210 (273)
T ss_pred ccccccccccchhhhhhhhhcccccccccCCccccccc
Confidence 33556666677899999999999999999999999874
No 13
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=74.12 E-value=4.3 Score=31.62 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=31.7
Q ss_pred cceeeeecCC---CCCceeEEEeeccCCCCceeeEecCCCCCC-----ceeeeecccCC
Q 016703 230 GRKVWTRWPE---DNHFYEAVITDYNPNEGRHALVYDINTADE-----TWEWVNLKEIS 280 (384)
Q Consensus 230 GrrVkv~WPd---Dn~wYeg~ItdYn~~tg~H~LvYD~g~~~E-----twEwVdL~e~s 280 (384)
|-+|-++==+ ...||.|+|.+.+... +..|.|++-..++ .-|||+...|-
T Consensus 4 G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~~~~~~~~~~~l~e~V~~~~iR 61 (68)
T PF05641_consen 4 GDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDDLPDEDGESPPLKEWVDARRIR 61 (68)
T ss_dssp T-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT-SS--------EEEEEGGGEE
T ss_pred CCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECCcccccccccccEEEechheEE
Confidence 4455554322 2679999999999977 9999997655332 46899988753
No 14
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=64.55 E-value=8.8 Score=33.61 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=27.8
Q ss_pred cceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT 266 (384)
Q Consensus 230 GrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~ 266 (384)
|.+|-.+|..|+-||-|+|.++= ..+.-.|.++.++
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~ 36 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGD 36 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCC
Confidence 67899999999999999999998 4444445554443
No 15
>PF15315 FRG2: Facioscapulohumeral muscular dystrophy candidate 2
Probab=62.88 E-value=29 Score=32.91 Aligned_cols=47 Identities=21% Similarity=0.464 Sum_probs=38.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHhC
Q 016703 46 MQNDMATQIHSVEQDAYSSVLRAFKAQS-DAITWEKESLITELRKELR 92 (384)
Q Consensus 46 ~~~~~~~~Ih~LE~eAY~sVLrAF~AQS-~~LSWeKE~LLTeLR~eL~ 92 (384)
+...+..-|+.|--.-|..+.+.-+-|- .+||||+-.+|++||--|-
T Consensus 111 lRKsLVtslR~~SEaIYqD~aq~~aQq~~spLt~EQl~~L~qL~gpL~ 158 (181)
T PF15315_consen 111 LRKSLVTSLRAMSEAIYQDLAQVQAQQHHSPLTWEQLSQLAQLRGPLC 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHhccHHH
Confidence 4568889999999999998887666553 3699999999999998763
No 16
>PF14717 DUF4465: Domain of unknown function (DUF4465); PDB: 4E9K_A.
Probab=59.92 E-value=7.9 Score=36.41 Aligned_cols=42 Identities=26% Similarity=0.686 Sum_probs=24.1
Q ss_pred CCCCceeEEEeeccCC----CCceeeE-ecCCC--CCCceeeeecccCC
Q 016703 239 EDNHFYEAVITDYNPN----EGRHALV-YDINT--ADETWEWVNLKEIS 280 (384)
Q Consensus 239 dDn~wYeg~ItdYn~~----tg~H~Lv-YD~g~--~~EtwEwVdL~e~s 280 (384)
.+..||+=+|+.||.. +-+|.|. |.-+. .--+|.||||..+.
T Consensus 104 ~~gD~fkl~i~G~d~~g~~~~ve~yLAdyr~~~~~iv~~W~~vDLssLg 152 (182)
T PF14717_consen 104 EDGDYFKLTITGYDADGSTGTVEFYLADYRNDKDYIVDDWQWVDLSSLG 152 (182)
T ss_dssp -TT-EEEEEEEETTSS----EEEEEEEETTE----E--S-EEEE-GGG-
T ss_pred CCCCEEEEEEEEecCccccceEEEEEeecccccceeecceeEEeccccC
Confidence 3578999999999986 3344443 33222 22389999999874
No 17
>TIGR02612 mob_myst_A mobile mystery protein A. Members of this protein family are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein B, a member of the Fic protein family (pfam02661). This protein is encoded by the upstream member of the gene pair and belongs to a family of helix-turn-helix DNA binding proteins (pfam01381).
Probab=59.44 E-value=15 Score=33.37 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 016703 56 SVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS 103 (384)
Q Consensus 56 ~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~ 103 (384)
.|.++.|...|.+|+. -+.+++.++..|..+|+++++|.++=-+.+.
T Consensus 3 ~~~~~q~~~~l~~~~~-~~~~~~p~~~~Ir~~R~~lGmTq~eLAerlG 49 (150)
T TIGR02612 3 KLALRQLDQRLVALAG-AGAIQTPKEGWVRAIRKALGMSGAQLAGRLG 49 (150)
T ss_pred HHHHHHHHHHHHHHhh-ccccccCcHHHHHHHHHHcCCCHHHHHHHhC
Confidence 5678889999999877 3789999999999999999999887665543
No 18
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.40 E-value=31 Score=32.29 Aligned_cols=53 Identities=21% Similarity=0.351 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHhcCCCCChHHH-------HHHHHHHHHhCCChHHHHHHH
Q 016703 49 DMATQIHSVEQDAY-SSVLRAFKAQSDAITWEKE-------SLITELRKELRVSDEEHRELL 102 (384)
Q Consensus 49 ~~~~~Ih~LE~eAY-~sVLrAF~AQS~~LSWeKE-------~LLTeLR~eL~ISdeEH~~~l 102 (384)
+-..+|..||.++- .++|-+|-| ...|+-+.. .-|.+|+.+|+|++++...-|
T Consensus 96 ~p~~EL~~LEnde~L~~LLdrLda-getLs~edQ~~VD~~LDRI~~LMe~LGl~~dddEdDl 156 (169)
T COG3078 96 SPQAELELLENDERLDALLDRLDA-GETLSAEDQQWVDAKLDRIDELMEKLGLSYDDDEDDL 156 (169)
T ss_pred CHHHHHHHhhhhHHHHHHHHHhhc-cCcccHHHHHHHHHHHHHHHHHHHHhCCccCCchHHH
Confidence 44578899998886 678888888 567775443 347899999999998875543
No 19
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=56.19 E-value=22 Score=31.57 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=33.0
Q ss_pred ccceeeeecCCCCCceeEEEeecc-CCCCceeeEecCCCCCCce
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYN-PNEGRHALVYDINTADETW 271 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn-~~tg~H~LvYD~g~~~Etw 271 (384)
.|.+|...||+--.||.|+|.+=. ..++...|.+|+.+.....
T Consensus 74 ~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~ 117 (130)
T PF07039_consen 74 KGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGY 117 (130)
T ss_dssp TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSB
T ss_pred CCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCc
Confidence 688999999999999999999983 3567888999998876543
No 20
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=55.09 E-value=20 Score=32.78 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=36.9
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (384)
.+||||.|.+- =+|...+.|+|+.-.-.+|...+++++| +||+|..+
T Consensus 88 ~slVGk~V~~~-~~~g~~~tG~V~~V~~~~g~~~~~~v~G------~~~~ls~i 134 (142)
T PRK09618 88 SELIGKEVEWE-GEDGEIVSGTVTSVKQKDGDYPLVLDNG------TWIVADNV 134 (142)
T ss_pred HHHhCCEEEEE-eCCCCEEEEEEEEEEEcCCcEEEEEECC------EEEeccce
Confidence 57999999854 3456799999999998889888888888 56665543
No 21
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=46.45 E-value=49 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHh
Q 016703 81 ESLITELRKELRVSDEEHRELLSKVNADDIILRIREW 117 (384)
Q Consensus 81 E~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~ 117 (384)
.++|++|...+..+ .+...+|.+|-++++++.|++.
T Consensus 6 ~e~L~~L~~~~~~~-~~~~~eL~~lL~~p~~~aLl~~ 41 (56)
T PF02828_consen 6 LELLEELQSLSSAS-QEDAQELQQLLQSPHFQALLEV 41 (56)
T ss_dssp HHHHHHHHHHTSST-HHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-hHHHHHHHHHHcCHHHHHHHHH
Confidence 36788999989998 7888899999999999999885
No 22
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.39 E-value=1.8e+02 Score=27.45 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=46.0
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHHhC----CChHHHHHHHHHhchhHHHHHH---HHhh
Q 016703 49 DMATQI--HSVEQDAYSSVLRAFKAQSDAITWEKESLIT-ELRKELR----VSDEEHRELLSKVNADDIILRI---REWR 118 (384)
Q Consensus 49 ~~~~~I--h~LE~eAY~sVLrAF~AQS~~LSWeKE~LLT-eLR~eL~----ISdeEH~~~l~~v~~De~i~~i---Re~r 118 (384)
.++.++ .+.|++++.+-.=|=+- ..++-|||..|. +|++|++ +|-+|-.++-...-++-.+.-| |+|-
T Consensus 75 ~Ler~lRl~R~E~~~WN~dFWa~hN--~~F~~eKedFi~~kL~~EsG~~~~vsA~ems~FYk~FL~kn~~~hm~YNr~WY 152 (178)
T KOG4094|consen 75 ELERQLRLAREELNQWNSDFWAEHN--QLFDREKEDFIERKLQQESGRLEHVSANEMSEFYKDFLNKNHVAHMAYNREWY 152 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHhhhHHHHHHHhHHHH
Confidence 445544 45678888776655544 358889999994 7899998 7888877766655555444433 6664
No 23
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=35.61 E-value=48 Score=38.01 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhH
Q 016703 51 ATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109 (384)
Q Consensus 51 ~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De 109 (384)
..+|..|+-+|-+-|+.++-+ +.+-=.+|.|+..+|..|+++-+||-+...++...+
T Consensus 54 ~~~~e~ly~ealytvl~~~g~--~d~e~~~e~l~sy~~~~fg~~~~eh~~~~e~v~~~k 110 (1103)
T KOG1328|consen 54 KKQIEALYVEALYTITHKLGQ--GDVEESQESLYKYVRNAFGGDAAEHNALMEKVKQNK 110 (1103)
T ss_pred HHHHHHHhhhhHHhhhHhhcC--CcchhhhhHHHHHHHHHhCCCHhHhhhccccccCCC
Confidence 378899999999999999984 678888999999999999999999988887775553
No 24
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.77 E-value=40 Score=39.04 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=31.5
Q ss_pred CCCCeeecccchhHHHHHHHhccCCCChhhHHHHHHHhhh
Q 016703 343 PLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKV 382 (384)
Q Consensus 343 ~~~~i~i~~t~slikeVervf~~~~pd~~eiekAkk~lke 382 (384)
+.|-++|++-=||=+=-+++.+ .|=||.||++||+-+|.
T Consensus 601 VIDPlDVI~Gisle~L~~~L~~-gNLdp~Ev~~a~~gq~k 639 (995)
T KOG0432|consen 601 VIDPLDVIDGISLEKLHAKLLS-GNLDPREVEKAKKGQKK 639 (995)
T ss_pred ccCHHHHhccccHHHHHHHHHc-CCCCHHHHHHHHHHHHh
Confidence 5777888888777666677776 68899999999998874
No 25
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=32.78 E-value=39 Score=36.98 Aligned_cols=30 Identities=33% Similarity=0.599 Sum_probs=27.2
Q ss_pred chhHHHHHHHhccCCCChhhHHHHHHHhhh
Q 016703 353 ETLIKEVEKVFAANHPDPTDVEKAKRVLKV 382 (384)
Q Consensus 353 ~slikeVervf~~~~pd~~eiekAkk~lke 382 (384)
-+|++|+||..-++|||-.+|.++--+.|+
T Consensus 244 ~~lLQELERhme~~HpDrgD~qrs~avfk~ 273 (661)
T KOG2070|consen 244 PTLLQELERHMEDYHPDRGDIQRSMAVFKN 273 (661)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 379999999999999999999999887775
No 26
>PRK05244 Der GTPase activator; Provisional
Probab=31.77 E-value=1.1e+02 Score=29.14 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH-------HHHHHHHHhCCChHHHHH
Q 016703 50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKES-------LITELRKELRVSDEEHRE 100 (384)
Q Consensus 50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~-------LLTeLR~eL~ISdeEH~~ 100 (384)
-+.+|-.||-++.-.+|-.-.-....||=+-.. -|..|+.+|+|++++-.+
T Consensus 96 pEqEL~~LEnD~rL~~LLdrLE~Ge~Ls~~dQ~yvD~~LdRie~LM~~LGI~~edd~~ 153 (177)
T PRK05244 96 PEQELEKLENDERLNALLDRLEAGETLSAEDQKWVDEKLDRIDELMEKLGISDDDDEE 153 (177)
T ss_pred HHHHHHHHhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 378999999999966666555556778754433 368899999999987544
No 27
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=31.17 E-value=1e+02 Score=33.32 Aligned_cols=12 Identities=50% Similarity=1.348 Sum_probs=6.0
Q ss_pred CCCceeeeeccc
Q 016703 267 ADETWEWVNLKE 278 (384)
Q Consensus 267 ~~EtwEwVdL~e 278 (384)
++|.|+|++|..
T Consensus 67 EdE~~~~~~i~a 78 (465)
T PF01690_consen 67 EDENWNWVNIDA 78 (465)
T ss_pred ecccceeEEecc
Confidence 345555555544
No 28
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=31.03 E-value=1.5e+02 Score=21.33 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCChH-HHHHH-HHHHHHhCCChHHHHHHHHHh
Q 016703 49 DMATQIHSVEQDAYSSVLRAFKAQSDAITWE-KESLI-TELRKELRVSDEEHRELLSKV 105 (384)
Q Consensus 49 ~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWe-KE~LL-TeLR~eL~ISdeEH~~~l~~v 105 (384)
++..=|..+...-|. .+|..+ .++-. .-.+. .+..++++|.+..|+..+.+.
T Consensus 8 ~v~~wL~~~g~~~y~---~~f~~~--~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~ 61 (68)
T smart00454 8 SVADWLESIGLEQYA---DNFRKN--GIDGALLLLLTSEEDLKELGITKLGHRKKILKA 61 (68)
T ss_pred HHHHHHHHCChHHHH---HHHHHC--CCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHH
Confidence 445555555555554 455543 23333 22333 566789999999999966443
No 29
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=1.8e+02 Score=31.49 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=31.2
Q ss_pred eeecccc-hhHHHHHHHhccCCCC-----hhhHHHHHHHhhhc
Q 016703 347 IEILHTE-TLIKEVEKVFAANHPD-----PTDVEKAKRVLKVS 383 (384)
Q Consensus 347 i~i~~t~-slikeVervf~~~~pd-----~~eiekAkk~lke~ 383 (384)
.+-+.+| +|+.=|||-.-..||+ ..-++.|||||||-
T Consensus 185 f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EA 227 (491)
T KOG0738|consen 185 FDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEA 227 (491)
T ss_pred CCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHH
Confidence 4556777 9999999998889995 56789999999984
No 30
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=29.85 E-value=66 Score=23.96 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC-CC-CChHHHHHHHHHHHHhCCChHHHHHHH-HHh
Q 016703 48 NDMATQIHSVEQDAYSSVLRAFKAQS-DA-ITWEKESLITELRKELRVSDEEHRELL-SKV 105 (384)
Q Consensus 48 ~~~~~~Ih~LE~eAY~sVLrAF~AQS-~~-LSWeKE~LLTeLR~eL~ISdeEH~~~l-~~v 105 (384)
.++..=|..+.++.|...++...-.+ .. +.... .+|+ +++|++..|+.-+ +.|
T Consensus 7 ~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~----~~L~-~lGI~~~~~r~kll~~i 62 (66)
T PF07647_consen 7 EDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTE----EDLK-ELGITNLGHRRKLLSAI 62 (66)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCH----HHHH-HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCH----HHHH-HcCCCCHHHHHHHHHHH
Confidence 46777778888888887777665532 11 22222 3455 9999999998744 443
No 31
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=27.86 E-value=1.8e+02 Score=24.18 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 016703 49 DMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 105 (384)
Q Consensus 49 ~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v 105 (384)
++...|.+|+-.-|+.||+-+|- +.++|+ +...+|+||...=-.+.+++
T Consensus 47 ei~~~I~~l~d~~~r~iL~~~Yi--~~~~~~------~I~~~l~~S~~t~yr~~~~A 95 (100)
T PF07374_consen 47 EIRRAINKLEDPDERLILRMRYI--NKLTWE------QIAEELNISRRTYYRIHKKA 95 (100)
T ss_pred HHHHHHHHccChhHHHHHHHHHH--cCCCHH------HHHHHHCCCHHHHHHHHHHH
Confidence 45566777888889999999999 468997 46788999965544444433
No 32
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. LSm16 has, in addition to its N-terminal Sm-like domain, a C-terminal Yjef_N-type rossman fold domain of unknown function.
Probab=27.14 E-value=1.2e+02 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=42.2
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC------CCCceeeeecccC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT------ADETWEWVNLKEI 279 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~------~~EtwEwVdL~e~ 279 (384)
+.+||.-|.+-==++-.-|.|.|..-|+.+-.=.|..-..+ ++-+|.-.|++++
T Consensus 2 ~dWiGs~VSI~C~~~lGVyQG~i~~V~~~~qTI~l~~~~~ngik~~~~EVt~~~~DI~~L 61 (62)
T cd01737 2 QDWLGSIVSINCGETLGVYQGLVSAVDQESQTISLAFPFHNGVKCLVPEVTFRAGDIREL 61 (62)
T ss_pred CcccceEEEEecCCceEEEEEEEEEeCccceEEEEeecccCCccccCceEEEEEcchhhc
Confidence 56899999999999999999999999998865555555544 5557777776654
No 33
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=26.91 E-value=1e+02 Score=23.71 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 016703 67 RAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 105 (384)
Q Consensus 67 rAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v 105 (384)
.|+.. +=++|-++.-+++|=++|+||...=.+.|++.
T Consensus 11 ~A~~~--GYfd~PR~~tl~elA~~lgis~st~~~~LRra 47 (53)
T PF04967_consen 11 AAYEL--GYFDVPRRITLEELAEELGISKSTVSEHLRRA 47 (53)
T ss_pred HHHHc--CCCCCCCcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444 78999999999999999999998877777766
No 34
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=26.27 E-value=71 Score=37.10 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=30.1
Q ss_pred ccceeeeecCCC----CCceeEEEeeccCCC--------CceeeEecCCC
Q 016703 229 IGRKVWTRWPED----NHFYEAVITDYNPNE--------GRHALVYDINT 266 (384)
Q Consensus 229 VGrrVkv~WPdD----n~wYeg~ItdYn~~t--------g~H~LvYD~g~ 266 (384)
++-++++||-|. ..||||.|-+-.|.+ .++.|+||-++
T Consensus 981 ~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e 1030 (1113)
T KOG0644|consen 981 CRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTE 1030 (1113)
T ss_pred cccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCc
Confidence 466999999875 679999998877655 47788888774
No 35
>PF14772 NYD-SP28: Sperm tail
Probab=26.02 E-value=1.4e+02 Score=24.86 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHh
Q 016703 79 EKESLITELRKELRVSDEEHRELLSKV 105 (384)
Q Consensus 79 eKE~LLTeLR~eL~ISdeEH~~~l~~v 105 (384)
.|..||.+|..+|.-.+++|...|.+=
T Consensus 73 ~Kd~lI~~L~~eL~~~deqy~~~lr~q 99 (104)
T PF14772_consen 73 RKDALIKELQQELKEADEQYVKALRKQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999998877654
No 36
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.83 E-value=6.7 Score=46.39 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=43.1
Q ss_pred cccCCCcccceeeeecCCCCCceeE-EEeeccCCCCceeeEecCCCCCC
Q 016703 222 AATYNPLIGRKVWTRWPEDNHFYEA-VITDYNPNEGRHALVYDINTADE 269 (384)
Q Consensus 222 ~~~~~~LVGrrVkv~WPdDn~wYeg-~ItdYn~~tg~H~LvYD~g~~~E 269 (384)
.+...++||..+..||+.|+.||.+ .|..|+.....|.++|++.+..+
T Consensus 982 ~~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~~ 1030 (1266)
T KOG1525|consen 982 LAHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEEN 1030 (1266)
T ss_pred hhhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhhh
Confidence 4566889999999999999999999 89999999999999999998443
No 37
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=25.09 E-value=1.1e+02 Score=26.80 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=29.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcCC
Q 016703 84 ITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGL 123 (384)
Q Consensus 84 LTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~gg~ 123 (384)
|..||+.|++|..+-..+|.-- +.++|+|.++.--
T Consensus 49 Ik~iRe~~~lSQ~vFA~~L~vs-----~~Tv~~WEqGr~k 83 (104)
T COG2944 49 IKAIREKLGLSQPVFARYLGVS-----VSTVRKWEQGRKK 83 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHCCC-----HHHHHHHHcCCcC
Confidence 6689999999999988888544 7889999987653
No 38
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=24.90 E-value=1.3e+02 Score=26.76 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=43.0
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC-----CCCceeeeecccC-CccCccccCCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT-----ADETWEWVNLKEI-SPEDIKWEGDE 290 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~-----~~EtwEwVdL~e~-spedI~W~~e~ 290 (384)
+=|.++...+|-+.....++|... ...+.|.||+ ..|+||=+++..- -.+...|..|.
T Consensus 47 ~tG~~~e~~f~~~~kve~a~ie~~-----~~q~lY~dg~~~~FMD~etyeq~~v~~~~~~d~~~~l~eg 110 (131)
T COG0231 47 FTGKKVEKTFKADDKVEVAIVERK-----TAQYLYIDGDFYVFMDLETYEQYELPKDQIGDAAKFLKEG 110 (131)
T ss_pred cCCCEEEEEEcCCCEEEEeEEeee-----eEEEEEcCCCeEEEccCCCceEEEecchhhhhHHHhcCCC
Confidence 357799999999999999999764 4689999998 6788887765432 24455565443
No 39
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=24.68 E-value=25 Score=38.46 Aligned_cols=8 Identities=75% Similarity=1.502 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 016703 318 GAGRGRGT 325 (384)
Q Consensus 318 ~~grgrg~ 325 (384)
|+|||||.
T Consensus 544 ggg~grg~ 551 (556)
T PF05918_consen 544 GGGRGRGR 551 (556)
T ss_dssp --------
T ss_pred CCCCCCcc
Confidence 34555544
No 40
>PF11662 DUF3263: Protein of unknown function (DUF3263); InterPro: IPR021678 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.36 E-value=1.5e+02 Score=24.75 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhchhH--------HHHHHHHhhh
Q 016703 79 EKESLITELRKELRVSDEEHRELLSKVNADD--------IILRIREWRK 119 (384)
Q Consensus 79 eKE~LLTeLR~eL~ISdeEH~~~l~~v~~De--------~i~~iRe~r~ 119 (384)
.||.. +|.+|+||...--..|+.+..++ .|++||..|.
T Consensus 23 aKe~a---Ire~fGls~~rYyq~Ln~LiD~p~Ala~~P~lv~RLRR~R~ 68 (77)
T PF11662_consen 23 AKEEA---IREEFGLSPTRYYQRLNALIDDPAALAADPVLVRRLRRLRD 68 (77)
T ss_pred CcHHH---HHHHHCCCHHHHHHHHHHHhCChHHHHhCcHHHHHHHHHHH
Confidence 46654 46789999999999999988876 3566666654
No 41
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.30 E-value=1.1e+02 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT 266 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~ 266 (384)
-+||||.|.. .+. -+.|+|+.+.-..+...++.++|+
T Consensus 93 ~slIGk~V~~--~~~--~~~G~V~sV~~~~~~~~~~~~dg~ 129 (140)
T PRK06009 93 EGLIGRTVTS--ADG--SITGVVKSVTVYSDGVIATLEDGK 129 (140)
T ss_pred HHhcCCEEEe--cCC--cEEEEEEEEEEeCCceEEEEECCE
Confidence 4699999974 443 589999999988788888888873
No 42
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=23.98 E-value=1.2e+02 Score=28.63 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH-------HHHHHHHHHhCCChHHHHH
Q 016703 49 DMATQIHSVEQDAYSSVLRAFKAQSDAITWEKE-------SLITELRKELRVSDEEHRE 100 (384)
Q Consensus 49 ~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE-------~LLTeLR~eL~ISdeEH~~ 100 (384)
.-+.+|-.||-++.-..|-.-.-....||-+-. .-|..|+.+|+|++++-.+
T Consensus 96 spEqEL~~LEnD~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~LGi~~ddd~e 154 (169)
T PF04220_consen 96 SPEQELEMLENDERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEELGIEDDDDDE 154 (169)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 446889999999996666555554677775433 3368999999999988763
No 43
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.91 E-value=1.9e+02 Score=17.99 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHH-HHHHHHhCC
Q 016703 60 DAYSSVLRAFKAQSDAITWEKESLI-TELRKELRV 93 (384)
Q Consensus 60 eAY~sVLrAF~AQS~~LSWeKE~LL-TeLR~eL~I 93 (384)
..|..+|+||.... .|+.-..+ .+++ +.+|
T Consensus 2 ~ty~~ll~a~~~~g---~~~~a~~~~~~M~-~~gv 32 (34)
T PF13812_consen 2 HTYNALLRACAKAG---DPDAALQLFDEMK-EQGV 32 (34)
T ss_pred cHHHHHHHHHHHCC---CHHHHHHHHHHHH-HhCC
Confidence 47999999999954 45544333 4433 3555
No 44
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=23.77 E-value=27 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=16.9
Q ss_pred ecccchhHHHHHHHhccCCCChhh
Q 016703 349 ILHTETLIKEVEKVFAANHPDPTD 372 (384)
Q Consensus 349 i~~t~slikeVervf~~~~pd~~e 372 (384)
+++..+|+.+|..+|. .|||..+
T Consensus 18 ~~~~~~v~~~v~~Ll~-~hpdLl~ 40 (47)
T PF02671_consen 18 RISRSEVIEEVSELLR-GHPDLLE 40 (47)
T ss_dssp CSCHHHHHHHHHHHTT-T-HHHHH
T ss_pred CCCHHHHHHHHHHHHc-cCHHHHH
Confidence 4566789999999887 7887654
No 45
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=23.66 E-value=53 Score=29.29 Aligned_cols=28 Identities=43% Similarity=0.602 Sum_probs=20.5
Q ss_pred eeecccchhHHHHHHHhccCC-CChhhHH
Q 016703 347 IEILHTETLIKEVEKVFAANH-PDPTDVE 374 (384)
Q Consensus 347 i~i~~t~slikeVervf~~~~-pd~~eie 374 (384)
|.---|-.-+||+||||...| ||..--|
T Consensus 20 IRTTFTS~QLkELErvF~ETHYPDIYTRE 48 (125)
T KOG0484|consen 20 IRTTFTSAQLKELERVFAETHYPDIYTRE 48 (125)
T ss_pred hhhhhhHHHHHHHHHHHHhhcCCcchhHH
Confidence 444456667899999998755 8886544
No 46
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=23.53 E-value=4.1e+02 Score=24.11 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=47.6
Q ss_pred CCCcccchhhHHHHHHHHH----HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHH
Q 016703 40 SASLPRMQNDMATQIHSVE----QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE 100 (384)
Q Consensus 40 ~~py~r~~~~~~~~Ih~LE----~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~ 100 (384)
..||...-.+++.++.+-+ .+|+...+..+... ..|+-+..++|.+|=+.|+.||.+...
T Consensus 63 ~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~-~~L~~~d~e~L~~lg~~LG~~D~~~Q~ 126 (170)
T PF09548_consen 63 EGPIGEFFERVAERLEKNEGESFAEAWEEAVEKLLKE-SALKKEDKEILLELGKSLGYSDREMQE 126 (170)
T ss_pred cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhc-CCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 3455555567888888777 67777777777764 689999999999999999999988766
No 47
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=22.32 E-value=1.9e+02 Score=23.52 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHH
Q 016703 60 DAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL 102 (384)
Q Consensus 60 eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l 102 (384)
+-+.-+|++++...+.++ ..+|+..+...+++++|+=.+.+
T Consensus 4 ~~~~piL~~L~~~g~~~~--~~ei~~~v~~~~~ls~e~~~~~~ 44 (92)
T PF14338_consen 4 ELMPPILEALKDLGGSAS--RKEIYERVAERFGLSDEERNERL 44 (92)
T ss_pred HHHHHHHHHHHHcCCCcC--HHHHHHHHHHHhCCCHHHHHHHc
Confidence 446789999999667554 66899999999999999655444
No 48
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=22.18 E-value=74 Score=25.09 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDIN 265 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g 265 (384)
...+|.-+-..-+.|+.||.|+| ..+.....-.|.|=|-
T Consensus 51 ~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~ 89 (121)
T PF00567_consen 51 ESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDY 89 (121)
T ss_dssp T--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTT
T ss_pred ccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEec
Confidence 34466677778899999999999 5555556656665443
No 49
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=21.04 E-value=3.4e+02 Score=29.54 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCChHHHH----------------HHHHHHHHhCCChHHHHHHHHHhch--hHHHHHHHH
Q 016703 61 AYSSVLRAFKAQSDAITWEKES----------------LITELRKELRVSDEEHRELLSKVNA--DDIILRIRE 116 (384)
Q Consensus 61 AY~sVLrAF~AQS~~LSWeKE~----------------LLTeLR~eL~ISdeEH~~~l~~v~~--De~i~~iRe 116 (384)
-|..-|.|+..--.+|.|=-.. -+-...+|++=+|..|-+-.....+ ++.+.=||+
T Consensus 132 ~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY~NrvLkEyk~~D~~hveWvKa~l~l~~eL~~YVk~ 205 (480)
T KOG2675|consen 132 PFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFYTNRVLKEYKEKDPRHVEWVKAYLALFLELQAYVKE 205 (480)
T ss_pred hHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666655667774333 2345778999999999885544322 234555555
No 50
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=20.99 E-value=1.2e+02 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=29.9
Q ss_pred ceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703 231 RKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (384)
Q Consensus 231 rrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~ 267 (384)
..|+..| +-.||-|+|.+.+....+-.|.+++++.
T Consensus 14 ~avW~~~--~~~yYPa~~~~~~~~~~~~~V~Fedg~~ 48 (131)
T PF08605_consen 14 NAVWAGY--NLKYYPATCVGSGVDRDRSLVRFEDGTY 48 (131)
T ss_pred cceeecC--CCeEeeEEEEeecCCCCeEEEEEecCce
Confidence 3567777 7899999999998888789999999983
No 51
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.80 E-value=1.6e+02 Score=27.12 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchh
Q 016703 58 EQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNAD 108 (384)
Q Consensus 58 E~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~D 108 (384)
++.++..+...|++++ .+||.+|.--..|=..++..-+.|
T Consensus 48 QQa~~q~I~~~f~~~t-----------~~LRqqL~aKr~ELnALl~~~~pD 87 (143)
T PRK11546 48 QQAAWQKIHNDFYAQT-----------SALRQQLVSKRYEYNALLTANPPD 87 (143)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3445555555666642 344444444444444444444444
No 52
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.55 E-value=1.5e+03 Score=26.99 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q 016703 49 DMATQIHSVEQDA 61 (384)
Q Consensus 49 ~~~~~Ih~LE~eA 61 (384)
|+..-|..+.-+|
T Consensus 455 d~~~liD~~vdka 467 (1102)
T KOG1924|consen 455 DLTELIDKMVDKA 467 (1102)
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444333
Done!