Query 016703
Match_columns 384
No_of_seqs 145 out of 163
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 99.9 9.5E-26 3.2E-30 189.0 10.1 74 47-121 15-88 (102)
2 2fmm_E Protein EMSY; ENT domai 99.9 2E-24 6.9E-29 188.1 9.6 73 47-120 7-79 (133)
3 2equ_A PHD finger protein 20-l 97.4 0.00019 6.6E-09 56.8 5.6 53 226-281 9-61 (74)
4 2l8d_A Lamin-B receptor; DNA b 97.4 8.7E-05 3E-09 58.1 3.4 41 228-268 11-51 (66)
5 2dig_A Lamin-B receptor; tudor 97.4 8.5E-05 2.9E-09 58.3 3.4 41 228-268 14-54 (68)
6 1mhn_A SurviVal motor neuron p 97.2 0.00038 1.3E-08 51.9 4.4 53 229-281 6-58 (59)
7 4a4f_A SurviVal of motor neuro 97.0 0.00092 3.2E-08 50.7 5.3 51 226-279 8-58 (64)
8 1g5v_A SurviVal motor neuron p 96.9 0.001 3.5E-08 54.1 4.8 54 226-279 10-63 (88)
9 3p8d_A Medulloblastoma antigen 96.9 0.00084 2.9E-08 52.5 4.1 37 228-266 8-44 (67)
10 2ldm_A Uncharacterized protein 95.9 0.00018 6.2E-09 58.2 0.0 48 229-279 9-56 (81)
11 2g3r_A Tumor suppressor P53-bi 96.7 0.0011 3.6E-08 57.4 3.9 42 226-268 4-45 (123)
12 3pnw_C Tudor domain-containing 96.7 0.0013 4.6E-08 51.8 4.1 56 227-282 18-73 (77)
13 3qii_A PHD finger protein 20; 96.7 0.0014 4.7E-08 53.6 4.2 39 226-266 21-59 (85)
14 2d9t_A Tudor domain-containing 96.4 0.0032 1.1E-07 49.6 4.7 57 226-282 9-65 (78)
15 3s6w_A Tudor domain-containing 96.4 0.0027 9.4E-08 46.2 4.0 40 229-268 4-43 (54)
16 1ssf_A Transformation related 96.2 0.0042 1.4E-07 55.7 4.5 42 226-268 8-49 (156)
17 2eqj_A Metal-response element- 96.0 0.0055 1.9E-07 48.0 4.0 49 228-281 15-63 (66)
18 1wgs_A MYST histone acetyltran 95.1 0.098 3.3E-06 45.2 9.0 49 228-279 14-67 (133)
19 2m0o_A PHD finger protein 1; t 94.2 0.23 7.7E-06 40.1 8.2 49 228-281 28-76 (79)
20 3fdr_A Tudor and KH domain-con 94.1 0.043 1.5E-06 43.5 4.0 55 226-281 27-81 (94)
21 2eko_A Histone acetyltransfera 93.6 0.21 7.1E-06 40.6 7.2 64 226-291 9-78 (87)
22 2diq_A Tudor and KH domain-con 93.4 0.059 2E-06 44.0 3.6 55 227-282 33-87 (110)
23 2eqk_A Tudor domain-containing 93.3 0.056 1.9E-06 44.1 3.3 55 226-281 21-75 (85)
24 4hcz_A PHD finger protein 1; p 93.2 0.095 3.3E-06 40.1 4.3 48 228-280 5-52 (58)
25 2xk0_A Polycomb protein PCL; t 92.4 0.25 8.4E-06 39.0 5.7 38 227-267 16-53 (69)
26 3h8z_A FragIle X mental retard 91.9 0.16 5.5E-06 43.9 4.6 50 226-279 60-114 (128)
27 2eqm_A PHD finger protein 20-l 91.2 0.82 2.8E-05 36.9 7.8 48 228-278 21-69 (88)
28 2e5q_A PHD finger protein 19; 90.8 0.28 9.5E-06 38.1 4.4 50 228-282 9-58 (63)
29 2wac_A CG7008-PA; unknown func 90.1 0.24 8.2E-06 43.5 4.1 54 227-282 52-105 (218)
30 2rnz_A Histone acetyltransfera 89.3 2.3 8E-05 35.0 9.1 58 228-288 27-87 (94)
31 3ntk_A Maternal protein tudor; 88.1 0.32 1.1E-05 42.3 3.4 53 227-282 48-100 (169)
32 2e5p_A Protein PHF1, PHD finge 87.3 0.54 1.8E-05 37.0 3.8 48 228-280 11-58 (68)
33 2ro0_A Histone acetyltransfera 86.0 1.1 3.8E-05 36.6 5.2 57 228-288 25-85 (92)
34 2lcc_A AT-rich interactive dom 81.5 1.1 3.9E-05 35.2 3.4 50 228-279 7-61 (76)
35 3m9q_A Protein MALE-specific l 79.5 1.7 5.7E-05 36.3 3.9 46 228-275 21-77 (101)
36 2hqx_A P100 CO-activator tudor 77.5 1.7 5.9E-05 39.3 3.8 53 228-282 67-119 (246)
37 4b9w_A TDRD1, tudor domain-con 77.2 1.9 6.6E-05 38.2 3.9 53 228-281 67-119 (201)
38 4b9x_A TDRD1, tudor domain-con 76.3 2.2 7.5E-05 38.6 4.1 54 228-282 67-120 (226)
39 2f5k_A MORF-related gene 15 is 74.2 3 0.0001 34.7 4.1 47 228-278 24-73 (102)
40 2qqr_A JMJC domain-containing 72.8 1.7 5.8E-05 37.2 2.3 48 228-285 7-54 (118)
41 2lrq_A Protein MRG15, NUA4 com 74.3 0.8 2.7E-05 36.8 0.0 47 228-278 14-63 (85)
42 3m9p_A MALE-specific lethal 3 71.0 4.1 0.00014 34.5 4.2 50 224-275 17-77 (110)
43 1b34_A Protein (small nuclear 70.9 7.3 0.00025 32.6 5.7 39 226-265 8-49 (119)
44 3ask_A E3 ubiquitin-protein li 70.0 4.4 0.00015 38.0 4.6 60 229-288 5-75 (226)
45 2xdp_A Lysine-specific demethy 69.6 1.3 4.4E-05 38.2 0.8 47 228-284 8-54 (123)
46 3dlm_A Histone-lysine N-methyl 66.8 4.7 0.00016 37.7 4.0 48 227-278 69-120 (213)
47 2bud_A Males-absent on the fir 62.9 24 0.00083 28.9 7.1 47 230-279 18-70 (92)
48 3sd4_A PHD finger protein 20; 62.2 15 0.00052 27.7 5.5 46 228-276 14-60 (69)
49 3bdl_A Staphylococcal nuclease 60.9 5.7 0.00019 40.7 3.8 55 226-282 411-465 (570)
50 2guz_B Mitochondrial import in 52.0 6.1 0.00021 30.1 1.7 31 353-383 22-59 (65)
51 1y96_A Gemin6, SIP2, GEM-assoc 51.4 17 0.00059 29.4 4.4 46 225-273 12-57 (86)
52 4e9k_A Hypothetical protein; P 47.2 13 0.00045 35.3 3.5 40 240-280 167-207 (241)
53 2l2l_A Transcriptional repress 44.0 18 0.0006 26.1 2.9 15 79-93 5-19 (43)
54 2k3y_A Chromatin modification- 42.9 23 0.00077 30.9 4.1 22 229-252 12-33 (136)
55 3mea_A SAGA-associated factor 39.9 36 0.0012 30.9 5.1 40 229-268 119-159 (180)
56 3oa6_A MALE-specific lethal 3 39.3 26 0.0009 29.6 3.8 48 228-277 21-79 (110)
57 2vc8_A Enhancer of mRNA-decapp 35.5 42 0.0014 27.3 4.3 37 223-259 2-38 (84)
58 3mp6_A MBP, SGF29, maltose-bin 32.1 38 0.0013 33.4 4.3 37 229-266 460-496 (522)
59 2ou3_A Tellurite resistance pr 31.8 1.9E+02 0.0065 24.3 8.2 55 61-116 97-151 (161)
60 3db3_A E3 ubiquitin-protein li 31.0 63 0.0022 29.0 5.1 64 229-292 13-96 (161)
61 3rpp_A Glutathione S-transfera 31.0 97 0.0033 27.6 6.4 60 57-118 113-172 (234)
62 3h8z_A FragIle X mental retard 30.6 65 0.0022 27.6 4.9 31 232-265 7-37 (128)
63 3uul_A Utrophin; spectrin repe 28.8 35 0.0012 26.3 2.7 30 354-383 16-45 (118)
64 1r4w_A Glutathione S-transfera 28.0 1.3E+02 0.0043 26.2 6.5 58 59-118 115-172 (226)
65 1ucv_A Ephrin type-A receptor 23.6 99 0.0034 23.6 4.4 59 48-117 8-69 (81)
66 2xdp_A Lysine-specific demethy 22.9 58 0.002 27.9 3.2 39 226-266 64-102 (123)
67 3nvo_A Zinc transport protein 22.4 13 0.00046 33.3 -0.9 27 268-294 39-65 (264)
68 3uun_A Dystrophin; triple heli 22.3 36 0.0012 26.1 1.7 30 354-383 16-45 (119)
69 4fzm_A Bacteriocin; phosphatas 20.4 2.2E+02 0.0076 27.6 7.0 49 14-63 4-55 (284)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=99.93 E-value=9.5e-26 Score=189.03 Aligned_cols=74 Identities=30% Similarity=0.458 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhc
Q 016703 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS 121 (384)
Q Consensus 47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~g 121 (384)
.++++.+||+||++||++||+||+||++ ||||||+|||+||++||||||||+++|+++++|+.|++||++..+.
T Consensus 15 ~~e~~~~l~~LEleAY~svlrAf~AqG~-Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 15 RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 3599999999999999999999999965 9999999999999999999999999999999999999999998765
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=99.91 E-value=2e-24 Score=188.05 Aligned_cols=73 Identities=30% Similarity=0.462 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhh
Q 016703 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120 (384)
Q Consensus 47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r~~ 120 (384)
.++++.+||+||++||++||+||+||++ ||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus 7 ~~e~~~~lr~LEleAY~svl~Af~AqG~-LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g 79 (133)
T 2fmm_E 7 RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence 4689999999999999999999999965 999999999999999999999999999999999999999998733
No 3
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.43 E-value=0.00019 Score=56.76 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=45.1
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
.--||..|..+|. |+.||.|+|++.+.. +...|.|+|+ -.|+....+|+-|++
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~ 61 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCG
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCCh
Confidence 4458999999999 999999999999976 7899999999 777777777777755
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.41 E-value=8.7e-05 Score=58.06 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=37.4
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~ 268 (384)
-||..|.-+||-|+.||++.|+++|..+-...|.|-+|+.+
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e 51 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL 51 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 38889999999999999999999998888999999997654
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.41 E-value=8.5e-05 Score=58.33 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=37.4
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~ 268 (384)
-||..|.-+||-|+.||++.|+++|..+-...|.|-+|+.+
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e 54 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL 54 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 38889999999999999999999998888999999997654
No 6
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.17 E-value=0.00038 Score=51.87 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=42.2
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
+|..|...|.+|+.||.|+|++.+...+...|.|.|=.-.|.-..-||+.+++
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 78899999999999999999999988889999998854444444445555544
No 7
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=97.01 E-value=0.00092 Score=50.68 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=41.8
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (384)
..-||..|...|.+|+.||.|+|++.+...+...|.|.+=.-.| .|.+++|
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e---~V~~~~L 58 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAE---VTPLLNL 58 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEE---EEEGGGE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEE---EEeHHHc
Confidence 45699999999999999999999999998889999999865453 4444444
No 8
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.88 E-value=0.001 Score=54.13 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=43.7
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (384)
.--||-.|...|.+|+.||.|+|+..+...+...|.|.+=.-.|.-.+-+|+-+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence 345899999999999999999999999988899999988766655444444444
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.87 E-value=0.00084 Score=52.51 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=34.1
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT 266 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~ 266 (384)
.||.+|..+| .|+.||+|+|++.+.+ +...|.|++|+
T Consensus 8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~ 44 (67)
T 3p8d_A 8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGV 44 (67)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSC
T ss_pred ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCc
Confidence 5899999999 9999999999999998 67999999954
No 10
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.87 E-value=0.00018 Score=58.15 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=38.2
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (384)
||.+|..+|. |+.||.|+|++.+.. +...|+|++| ..|+..+-+|+-+
T Consensus 9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DG-n~E~V~~s~LrPl 56 (81)
T 2ldm_A 9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDG-VVQTVKHIHVKAF 56 (81)
Confidence 7999999999 999999999999854 5899999994 4545555555444
No 11
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.71 E-value=0.0011 Score=57.45 Aligned_cols=42 Identities=26% Similarity=0.559 Sum_probs=37.5
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~ 268 (384)
.++||.||..+|.++..||-|+|+. +...++..|.+|||+..
T Consensus 4 ~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~ 45 (123)
T 2g3r_A 4 NSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYEC 45 (123)
T ss_dssp -CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEE
T ss_pred ccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCee
Confidence 6799999999999888999999998 47889999999999755
No 12
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.70 E-value=0.0013 Score=51.84 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=45.2
Q ss_pred CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
--+|..|...|.+|+.||.|+|++.+...+...|.|.|=.-.|.-..-||+.|+++
T Consensus 18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 45899999999999999999999999887888899988666766666677777665
No 13
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.0014 Score=53.59 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=35.2
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT 266 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~ 266 (384)
.=.||.+|..+| .|..||.|+|++.+.. +...|.|++|+
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~ 59 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGV 59 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSC
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCC
Confidence 446999999999 9999999999999997 67999999954
No 14
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.44 E-value=0.0032 Score=49.59 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
..-+|..|...|.+|+.||.|+|++.+...+...|.|-|=.-.|.-..-||+.|+++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 346899999999999999999999999877889999988666666666677777654
No 15
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.43 E-value=0.0027 Score=46.21 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=33.0
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~ 268 (384)
+|..+...|.+|+.||.|+|++.+...+...|.|.|=.-.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~ 43 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY 43 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence 6888999999999999999999998878888999875444
No 16
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.17 E-value=0.0042 Score=55.66 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=37.7
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~ 268 (384)
.++||.||..+|.+++-||.|+|+.+ ...++..|.+|||...
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 49 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence 67999999999999999999999996 6677899999999844
No 17
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.03 E-value=0.0055 Score=48.02 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=42.6
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
-||.-|..+| .|.-||+|+|+.-|..++.-.|.|.||+.- ||..++|.+
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence 4888999999 999999999999999999999999999654 777666643
No 18
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=95.13 E-value=0.098 Score=45.21 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=38.2
Q ss_pred cccceeeeecCCCCCceeEEEeeccC----CCCceeeEecCCCCCCce-eeeecccC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETW-EWVNLKEI 279 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~----~tg~H~LvYD~g~~~Etw-EwVdL~e~ 279 (384)
-||-+|.++|+ |+.||+|.|.+-.. ..-...|.|..=+ -+| |||....|
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwN--kR~DEWV~~~ri 67 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFN--RRLDEWVDKNRL 67 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTC--SSCCEEECTTTS
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcC--CCceeecChhhc
Confidence 49999999998 77999999998664 2347888888644 345 89987776
No 19
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=94.17 E-value=0.23 Score=40.09 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=41.7
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
.+|.-|-.+| .|.-||-|+|+.-|...+.-.|.|+|++.- |+..++|.+
T Consensus 28 ~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~ 76 (79)
T 2m0o_A 28 WEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 76 (79)
T ss_dssp CTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred ccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence 4788999999 678999999999999999999999999754 777776643
No 20
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=94.11 E-value=0.043 Score=43.52 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=40.5
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
..-+|.-|-+.|++|+.||.|.|++... ++.-.|.|-|=.-.|.-..-||+.+.+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHHhhhcCH
Confidence 3458889999999999999999999974 456677776665554444445555554
No 21
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.63 E-value=0.21 Score=40.61 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCcccceeeeecC---CCCCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeecccCCccCccccCCCC
Q 016703 226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKEISPEDIKWEGDEP 291 (384)
Q Consensus 226 ~~LVGrrVkv~WP---dDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e~spedI~W~~e~p 291 (384)
.-.||-+|.++++ .++.||+|.|.+.+...+ +..|.|..=+. +| |||....|.-..++|...++
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk--RlDEWV~~~rl~~~~~~~p~~~~ 78 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR--RLDEWVTHERLDLKKIQFPKKEA 78 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS--CCCEEECTTTBCGGGCCCCCCSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc--ccccccCHhHcccccccCCCCCC
Confidence 3459999999997 689999999999887543 68888887654 45 89999998777788875433
No 22
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.36 E-value=0.059 Score=44.01 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
..+|.-|-..|.+|+.||.|+|+..+.. +.-.|.|-|=.-.|.-.+-||+.+.++
T Consensus 33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRSD 87 (110)
T ss_dssp CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGGCEECCHH
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHHhhcCcHH
Confidence 4578889999999999999999999874 556677777665555555566666553
No 23
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.29 E-value=0.056 Score=44.10 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=45.1
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
..-+|.-|-+..+|+|.||.|.|..-+..+.-|-+.||.|+.+ +..|-.|+.+.+
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~ 75 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEE 75 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCH
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCH
Confidence 4568889999999999999999999999999999999999754 444445555554
No 24
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=93.19 E-value=0.095 Score=40.12 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=39.9
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS 280 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~s 280 (384)
.+|..|-.+|-| .-||-|+|...|...+...|.++|++.- |+.+++|.
T Consensus 5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~ 52 (58)
T 4hcz_A 5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDIS 52 (58)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEE
T ss_pred ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHcc
Confidence 367889999976 8999999999999999999999999654 66555553
No 25
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=92.37 E-value=0.25 Score=39.02 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=30.4
Q ss_pred CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCC
Q 016703 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~ 267 (384)
=.+|.-|-++|=| ..||-|+|++ ..+..-.|.|+|++.
T Consensus 16 ~~~geDVL~rw~D-G~fYLGtIVd--~~~~~ClV~FeD~S~ 53 (69)
T 2xk0_A 16 YALQEDVFIKCND-GRFYLGTIID--QTSDQYLIRFDDQSE 53 (69)
T ss_dssp CCTTCEEEEECTT-SCEEEEEEEE--ECSSCEEEEETTCCE
T ss_pred cccCCeEEEEecC-CCEEEEEEEe--cCCceEEEEecCCcc
Confidence 3489999999966 9999999976 446777888898864
No 26
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=91.93 E-value=0.16 Score=43.93 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCcccceeeeecCCCC----CceeEEEeeccCCCCceeeEecCCCCCCce-eeeecccC
Q 016703 226 NPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLKEI 279 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn----~wYeg~ItdYn~~tg~H~LvYD~g~~~Etw-EwVdL~e~ 279 (384)
+--+|.+|.+||-.++ .||.|+|+.... ..+.|.|+.=+ .+| |||.+..|
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~--~~~~EiV~~~rl 114 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACD--ATYNEIVTLERL 114 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC------CEEECGGGE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCC--CCcceEEehhhe
Confidence 3459999999999887 899999999984 68899988744 244 78875554
No 27
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=91.16 E-value=0.82 Score=36.88 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=38.7
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCce-eeeeccc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLKE 278 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~Etw-EwVdL~e 278 (384)
-||-||...-+. +.||+|+|+.-+....+-.|.||--+ .+| |||+.+.
T Consensus 21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~--~~yDeWv~~dS 69 (88)
T 2eqm_A 21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWS--HRYDEWIYWDS 69 (88)
T ss_dssp CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSST--TTEEEEEETTS
T ss_pred CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCC--CcccEEeeCCC
Confidence 489999888766 57999999998888888899999664 556 7998653
No 28
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.84 E-value=0.28 Score=38.09 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=40.8
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
-+|.-|-.+| .|.-||-|+|+.-|.....-.|.|.|++.- ||..++|.+-
T Consensus 9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~ 58 (63)
T 2e5q_A 9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHA 58 (63)
T ss_dssp CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECC
T ss_pred ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeeccccc
Confidence 4788889999 568999999999999988899999998654 7766666443
No 29
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=90.11 E-value=0.24 Score=43.55 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=40.6
Q ss_pred CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
.-+|..|-..|.+|+.||.|+|++... +.-.|.|-|-...|...+-+|+.++++
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~~ 105 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPPA 105 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCGG
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCChh
Confidence 347888999999999999999999976 666777766555555555566666643
No 30
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=89.33 E-value=2.3 Score=34.99 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=45.0
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCceeeeecccCCcc-CccccC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~EtwEwVdL~e~spe-dI~W~~ 288 (384)
-||-+|.+++ ++.||+|.|.+-....+ +..|-|..-+.. --|||....|.-. +++|..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~ 87 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 87 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence 4999999996 88999999998776544 678888877543 1389999888544 488864
No 31
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=88.14 E-value=0.32 Score=42.33 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=37.7
Q ss_pred CcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
.-+|.-+-..|++|+.||.|+|+..+... .-.|.|-|=.-.|. +=+|+.+.++
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~--v~~lr~l~~~ 100 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV--TQQFRQLPEE 100 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE--ESCEECCCHH
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE--hhhhhccCHH
Confidence 34778888999999999999999998854 66677754433333 2355666543
No 32
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.28 E-value=0.54 Score=36.99 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=39.7
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS 280 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~s 280 (384)
-+|.-|-.+|-| .-||-|+|+.-|...+.-.|.|.|++.- |+..++|.
T Consensus 11 ~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~ 58 (68)
T 2e5p_A 11 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDIS 58 (68)
T ss_dssp CTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEE
T ss_pred ccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeeccc
Confidence 478889999966 9999999999999999999999998643 77655553
No 33
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=86.00 E-value=1.1 Score=36.63 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=44.7
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeecccCCcc-CccccC
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKEISPE-DIKWEG 288 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e~spe-dI~W~~ 288 (384)
-||-+|.+++ ++.||+|.|.+-+...+ ...|.|..=+. +| |||....|.-. +++|..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~Nk--RlDEWV~~~rl~l~~~v~~p~ 85 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK--RLDEWITTDRINLDKEVLYPK 85 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCT--TSCEEEEGGGEETTSCEEECC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc--ccccccCHhHcccccCccCCC
Confidence 4899999997 88999999998776543 68888887654 35 89998888544 477764
No 34
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=81.52 E-value=1.1 Score=35.17 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=39.1
Q ss_pred cccceeeeecCCC--CCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeecccC
Q 016703 228 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKEI 279 (384)
Q Consensus 228 LVGrrVkv~WPdD--n~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e~ 279 (384)
.||-+|.++|++. ..||+|.|.+-+...+ +..|-|..=+. +| |||....|
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnk--r~DEWV~~~ri 61 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNV--RYDEWVKADRI 61 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCC--SSCEEEEGGGE
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCC--CceEecChhhc
Confidence 4899999999953 7999999999887655 57888887544 34 89976554
No 35
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=79.53 E-value=1.7 Score=36.32 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=34.9
Q ss_pred cccceeeeecCC---CCCceeEEEeeccCCC-------CceeeEecCCCCCCce-eeee
Q 016703 228 LIGRKVWTRWPE---DNHFYEAVITDYNPNE-------GRHALVYDINTADETW-EWVN 275 (384)
Q Consensus 228 LVGrrVkv~WPd---Dn~wYeg~ItdYn~~t-------g~H~LvYD~g~~~Etw-EwVd 275 (384)
-||.+|..+++| ..-+|+|.|.+-...+ -...|.|.- =+.+| |||-
T Consensus 21 ~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~G--Wn~rwDEWV~ 77 (101)
T 3m9q_A 21 HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQG--WRPSYDRAVR 77 (101)
T ss_dssp CTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETT--SCGGGCEEEC
T ss_pred cCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCC--CCcCceeecC
Confidence 488999999998 6889999999987642 267788842 44567 7994
No 36
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=77.50 E-value=1.7 Score=39.25 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=37.8
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
-+|.-|-..|. |+.||.|+|++.+.. +.-.|.|-|-.-.|...+-+|+.+.++
T Consensus 67 ~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~~lr~l~~~ 119 (246)
T 2hqx_A 67 RRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPSTRLGTLSPA 119 (246)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGGGEECCCGG
T ss_pred CCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHHHhhcCCHh
Confidence 47888889998 899999999999764 356677766444444444466666643
No 37
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=77.20 E-value=1.9 Score=38.17 Aligned_cols=53 Identities=23% Similarity=0.326 Sum_probs=35.2
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (384)
-+|.-+-.++++|+.||.|.|++.... +.-.|.|=|--..|.-.+-+|+.+.+
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTDQLQAILP 119 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGGGEEECCG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHHHhccChH
Confidence 468888899999999999999998764 34455554433333333334455544
No 38
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=76.29 E-value=2.2 Score=38.58 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=36.2
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
-+|.-+-.++.+|+.||.|.|++.... +.-.|.|=|---.|.-.+-+|+.+.++
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTDQLQAILPQ 120 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGGGEECCCGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHHHhccChHH
Confidence 468888899999999999999998764 345555544433433333455555443
No 39
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=74.20 E-value=3 Score=34.71 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=36.5
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCC--ceeeEecCCCCCCce-eeeeccc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETW-EWVNLKE 278 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg--~H~LvYD~g~~~Etw-EwVdL~e 278 (384)
-||-+|.++| +..||+|.|.+-+...+ ...|.|..=+ -+| |||....
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwN--kR~DEWV~~~R 73 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWN--KNWDEWVPESR 73 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSC--GGGCEEEEGGG
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC--CCceeeccHhh
Confidence 4899999999 78999999999876544 7888888754 345 7996443
No 40
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=72.83 E-value=1.7 Score=37.22 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=36.3
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCccCcc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIK 285 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spedI~ 285 (384)
-||.+|...|. ++-||.|.|++-... --+.|.+|||+-- .++-||||-
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~s--------~dl~peDIv 54 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFS--------DNLYPEDIV 54 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCEE--------EEECGGGBC
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCcc--------CCCCHhhcc
Confidence 48999999998 789999999996444 4588889999622 245666663
No 41
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=74.26 E-value=0.8 Score=36.81 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=34.6
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCC--CceeeEecCCCCCCce-eeeeccc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETW-EWVNLKE 278 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~t--g~H~LvYD~g~~~Etw-EwVdL~e 278 (384)
-||-+|.++|. ..||+|.|.+-+... ....|.|..=+. +| |||....
T Consensus 14 ~~Gekv~~~~~--~~~y~AkIl~i~~~~~~~~YyVHY~GwNk--R~DEWV~~~R 63 (85)
T 2lrq_A 14 VDGERVLCFHG--PLIYEAKVLKTKPDATPVEYYIHYAGWSK--NWDEWVPENR 63 (85)
Confidence 48999999994 479999999987643 367788876543 34 7996443
No 42
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=70.99 E-value=4.1 Score=34.50 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=35.8
Q ss_pred cCCCcccceeeeecCC---CCCceeEEEeeccCCC-------CceeeEecCCCCCCce-eeee
Q 016703 224 TYNPLIGRKVWTRWPE---DNHFYEAVITDYNPNE-------GRHALVYDINTADETW-EWVN 275 (384)
Q Consensus 224 ~~~~LVGrrVkv~WPd---Dn~wYeg~ItdYn~~t-------g~H~LvYD~g~~~Etw-EwVd 275 (384)
.+.=.||-+|..++++ .+.||+|.|.+-...+ -.+.|.|.- =+.+| |||-
T Consensus 17 ~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~G--Wn~~wDEWV~ 77 (110)
T 3m9p_A 17 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNG--WNRSWDRWAA 77 (110)
T ss_dssp -CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETT--SCGGGCEEEE
T ss_pred CCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECC--CCcchhhccC
Confidence 3344589999999885 3689999999987542 258888853 34567 6994
No 43
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=70.92 E-value=7.3 Score=32.60 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=29.5
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCc---eeeEecCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGR---HALVYDIN 265 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~---H~LvYD~g 265 (384)
..++|++|.|.- .++.-|.|++..||.--.. .+..|..+
T Consensus 8 ~~~~gk~V~V~L-k~g~~~~G~L~~~D~~MNlvL~d~~e~~~~ 49 (119)
T 1b34_A 8 MKLSHETVTIEL-KNGTQVHGTITGVDVSMNTHLKAVKMTLKN 49 (119)
T ss_dssp HTCTTCEEEEEE-TTCCEEEEEEEEECTTCCEEEEEEEEECTT
T ss_pred HHhCCCEEEEEE-cCCCEEEEEEEEEcccceEEeccEEEecCC
Confidence 568899998865 6789999999999987663 34555433
No 44
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.99 E-value=4.4 Score=38.02 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=42.7
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCC---------CceeeEecCCCCCCcee--eeecccCCccCccccC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNE---------GRHALVYDINTADETWE--WVNLKEISPEDIKWEG 288 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~t---------g~H~LvYD~g~~~EtwE--wVdL~e~spedI~W~~ 288 (384)
||--|-.+|...++||||.|..+.... --.+|.||+-..++.-+ -.+++--+..-++|..
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~~~~~ 75 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQD 75 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBCCGGG
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccccCCccc
Confidence 788899999999999999999998844 34568888886555432 2233333445667743
No 45
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=69.64 E-value=1.3 Score=38.21 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=36.8
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCccCc
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 284 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spedI 284 (384)
-||.+|...|.+ +-||.|.|++-.. .--+.|.||||+-- .++-||||
T Consensus 8 ~vGq~V~ak~~n-gryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~PedI 54 (123)
T 2xdp_A 8 SVGQTVITKHRN-TRYYSCRVMAVTS-QTFYEVMFDDGSFS--------RDTFPEDI 54 (123)
T ss_dssp CTTCCCCCCCCC-CCCCCCEEEEEEE-EEEEEEEETTSCEE--------EEECGGGB
T ss_pred ccCCEEEEECCC-CcEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhHc
Confidence 488899999985 9999999999886 34588999999632 24567766
No 46
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=66.81 E-value=4.7 Score=37.71 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=37.2
Q ss_pred CcccceeeeecCCCC--CceeEEEeeccC--CCCceeeEecCCCCCCceeeeeccc
Q 016703 227 PLIGRKVWTRWPEDN--HFYEAVITDYNP--NEGRHALVYDINTADETWEWVNLKE 278 (384)
Q Consensus 227 ~LVGrrVkv~WPdDn--~wYeg~ItdYn~--~tg~H~LvYD~g~~~EtwEwVdL~e 278 (384)
=.||-||-.+|.+.+ .||.|+|..=.. ..-+++|-||||.+ .||.+.+
T Consensus 69 l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~----~Yv~~~~ 120 (213)
T 3dlm_A 69 LYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYA----SYVTQSE 120 (213)
T ss_dssp CCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCE----EEECGGG
T ss_pred EeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCc----ceecCce
Confidence 359999999999875 899999987443 33599999999963 3555554
No 47
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=62.90 E-value=24 Score=28.95 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.1
Q ss_pred cceeeeecCCCCCceeEEEeeccCCC-----CceeeEecCCCCCCce-eeeecccC
Q 016703 230 GRKVWTRWPEDNHFYEAVITDYNPNE-----GRHALVYDINTADETW-EWVNLKEI 279 (384)
Q Consensus 230 GrrVkv~WPdDn~wYeg~ItdYn~~t-----g~H~LvYD~g~~~Etw-EwVdL~e~ 279 (384)
|.+|.++|. |+.||+|.|.+-.... -+..|.|..-+.. | |||....|
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR--lDEWV~~~RL 70 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR--LDGWVGRHRI 70 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT--TCEEEETTTE
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc--cccccCHHHh
Confidence 779999997 7899999999866543 3788888876543 5 89976554
No 48
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=62.20 E-value=15 Score=27.72 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=35.5
Q ss_pred cccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCce-eeeec
Q 016703 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETW-EWVNL 276 (384)
Q Consensus 228 LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~Etw-EwVdL 276 (384)
-||-||...=+... ||.|+|++-|...++=.|.||--+ .+| ||++.
T Consensus 14 ~vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~--~~~D~W~~~ 60 (69)
T 3sd4_A 14 EVGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWN--HRYDEWFCW 60 (69)
T ss_dssp STTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSC--GGGCEEEET
T ss_pred CCCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCC--CCCCEEEcC
Confidence 37889988877655 599999998777788899998653 344 79974
No 49
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=60.91 E-value=5.7 Score=40.69 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceeeeecccCCcc
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (384)
..-+|.-|-..|. |+.||.|+|++.+. .+.-.|.|-|---.|.-.+-+|+.++++
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~Lr~l~~~ 465 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPA 465 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCGG
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHHCccCCHH
Confidence 4558999999999 99999999999987 4566777766555555555566666543
No 50
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=51.96 E-value=6.1 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.5
Q ss_pred chhHHHHHHHhccCCCC-------hhhHHHHHHHhhhc
Q 016703 353 ETLIKEVEKVFAANHPD-------PTDVEKAKRVLKVS 383 (384)
Q Consensus 353 ~slikeVervf~~~~pd-------~~eiekAkk~lke~ 383 (384)
+.+.+--.|+|..|||| ...|..||..|..+
T Consensus 22 ~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 22 DKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45555667899999999 88999999998764
No 51
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=51.41 E-value=17 Score=29.41 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCCCCCceee
Q 016703 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEW 273 (384)
Q Consensus 225 ~~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~~~EtwEw 273 (384)
..+||||+|++-- .|+..|.|++..|||.+--=-|+-- ..+++|--
T Consensus 12 l~~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n~--~~~~~~~~ 57 (86)
T 1y96_A 12 WQDYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVNF--LEDGSMSV 57 (86)
T ss_dssp HHHTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEEE--CTTSCEEE
T ss_pred HHhhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEeec--ccCCeEEE
Confidence 4679999999986 6789999999999998775545432 45666643
No 52
>4e9k_A Hypothetical protein; PF14717 family protein, DUF4465, structural genomics, joint for structural genomics, JCSG; 2.31A {Bacteroides ovatus}
Probab=47.21 E-value=13 Score=35.32 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=28.5
Q ss_pred CCCceeEEEeeccCCC-CceeeEecCCCCCCceeeeecccCC
Q 016703 240 DNHFYEAVITDYNPNE-GRHALVYDINTADETWEWVNLKEIS 280 (384)
Q Consensus 240 Dn~wYeg~ItdYn~~t-g~H~LvYD~g~~~EtwEwVdL~e~s 280 (384)
+..||.-+|+.||+.. -+|.|.= ...---+|+||||..+.
T Consensus 167 ~gD~Fklti~Gyd~~g~Ve~yLAD-~~~iV~~W~~vDLSsLG 207 (241)
T 4e9k_A 167 SNDSFKLTIYNYDKTMHVDCYLAE-GTNLLDQWKWVDLTSLG 207 (241)
T ss_dssp TTCEEEEEEEETTSSCEEEEEEEE-TTEECCSCEEEECGGGC
T ss_pred CCCEEEEEEEEECCCCcEEEEEec-CCEEecceEEEcccccC
Confidence 5779999999999433 2455544 23334589999999984
No 53
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=43.99 E-value=18 Score=26.07 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCC
Q 016703 79 EKESLITELRKELRV 93 (384)
Q Consensus 79 eKE~LLTeLR~eL~I 93 (384)
|+|.+|.+||.||++
T Consensus 5 ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 5 ERERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999984
No 54
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=42.86 E-value=23 Score=30.93 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.8
Q ss_pred ccceeeeecCCCCCceeEEEeecc
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYN 252 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn 252 (384)
||-+|..|| ..-||||.|..-.
T Consensus 12 ~gekvl~~h--g~llYeAKVl~v~ 33 (136)
T 2k3y_A 12 LGGRVLAFH--GPLMYEAKILKIW 33 (136)
T ss_dssp TTSEEEEEC--SSCEEEEEEEEEE
T ss_pred CCCEEEEEE--CCeeEEEEEEEEE
Confidence 889999999 5679999998755
No 55
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=39.87 E-value=36 Score=30.85 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=33.6
Q ss_pred ccceeeeecCCCCCceeEEEeeccCC-CCceeeEecCCCCC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPN-EGRHALVYDINTAD 268 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~-tg~H~LvYD~g~~~ 268 (384)
.|.+|...||+--.||.|+|..=-.. ++...|.+|+.+..
T Consensus 119 ~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~~ 159 (180)
T 3mea_A 119 KEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYA 159 (180)
T ss_dssp TTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTST
T ss_pred CCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCcc
Confidence 89999999999999999999986443 36888999887644
No 56
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=39.33 E-value=26 Score=29.56 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=33.3
Q ss_pred cccceeeeecCCC---CCceeEEEeeccCCC---C----ceeeEecCCCCCCce-eeeecc
Q 016703 228 LIGRKVWTRWPED---NHFYEAVITDYNPNE---G----RHALVYDINTADETW-EWVNLK 277 (384)
Q Consensus 228 LVGrrVkv~WPdD---n~wYeg~ItdYn~~t---g----~H~LvYD~g~~~Etw-EwVdL~ 277 (384)
-+|-+|-.|.||. .-.|||.|.+-...+ + .+.|.|--= +.+| |||.-+
T Consensus 21 ~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GW--n~~WDEWV~~d 79 (110)
T 3oa6_A 21 HSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGW--NRSWDRWAAED 79 (110)
T ss_dssp CTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTS--CGGGCEEEEGG
T ss_pred CCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCc--CcchhhccChh
Confidence 4888999999995 368999998864332 2 366777533 4457 799533
No 57
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=35.49 E-value=42 Score=27.27 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=30.2
Q ss_pred ccCCCcccceeeeecCCCCCceeEEEeeccCCCCcee
Q 016703 223 ATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHA 259 (384)
Q Consensus 223 ~~~~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~ 259 (384)
++.+.+||..|-+-==+|-.-|+|+|+.+|+.+..=.
T Consensus 2 ~Ma~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tIt 38 (84)
T 2vc8_A 2 AMATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTIS 38 (84)
T ss_dssp ---CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEE
T ss_pred cccccccCCEEEEEECCCceEEEEEEEEeccCCCeEE
Confidence 3457899999999999999999999999999875333
No 58
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=32.06 E-value=38 Score=33.41 Aligned_cols=37 Identities=32% Similarity=0.617 Sum_probs=32.9
Q ss_pred ccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT 266 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~ 266 (384)
.|.+|...||+--.||.|+|.. =+.++...|.|++.+
T Consensus 460 ~~~~v~a~~p~tt~fy~a~v~~-~~~~~~~~~~f~~~~ 496 (522)
T 3mp6_A 460 PGTKVLARYPETTTFYPAIVIG-TKRDGTCRLRFDGEE 496 (522)
T ss_dssp TTCEEEEECTTCSEEEEEEEEE-ECTTSCEEEEETTC-
T ss_pred CCCEEEEECCCCcceEeEEEec-CCCCCeEEEEecCCC
Confidence 8999999999999999999999 467788999999875
No 59
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=31.80 E-value=1.9e+02 Score=24.31 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH
Q 016703 61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 116 (384)
Q Consensus 61 AY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe 116 (384)
.....++.-+| -+.++-.-+.+|.++-..|+||..+-..++.++.......+.|-
T Consensus 97 ~l~~l~~vA~A-DG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~~~~~~~~r~ 151 (161)
T 2ou3_A 97 ILLSAIWVSAA-DGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYYEAALRQKRL 151 (161)
T ss_dssp HHHHHHHHHHT-TSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555 36799999999999999999999999999999988776666665
No 60
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=31.02 E-value=63 Score=29.03 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=45.3
Q ss_pred ccceeeeecCCCCCceeEEEee-ccC-----------------CCCceeeEecCCCCCCcee--eeecccCCccCccccC
Q 016703 229 IGRKVWTRWPEDNHFYEAVITD-YNP-----------------NEGRHALVYDINTADETWE--WVNLKEISPEDIKWEG 288 (384)
Q Consensus 229 VGrrVkv~WPdDn~wYeg~Itd-Yn~-----------------~tg~H~LvYD~g~~~EtwE--wVdL~e~spedI~W~~ 288 (384)
||--|-.+=.+-.+||||.|.. +-. +.-.++|.||+-..+...+ -.|++-=+-.-|+|.+
T Consensus 13 inelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpRARt~l~w~~ 92 (161)
T 3db3_A 13 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQD 92 (161)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECCCCCBCCGGG
T ss_pred ecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccceEEeccHHH
Confidence 6777788888889999999988 432 3357899999887766543 2344445667888875
Q ss_pred CCCC
Q 016703 289 DEPG 292 (384)
Q Consensus 289 e~pg 292 (384)
=.+|
T Consensus 93 L~vG 96 (161)
T 3db3_A 93 LEVG 96 (161)
T ss_dssp CCTT
T ss_pred CCcC
Confidence 4443
No 61
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=30.96 E-value=97 Score=27.57 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhh
Q 016703 57 VEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (384)
Q Consensus 57 LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r 118 (384)
...+.+.++.+|++.+.. .....+.|.++=.+++++.++=..++..+.+++....|++-.
T Consensus 113 ~~~~~~~al~~A~~~~g~--di~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~ 172 (234)
T 3rpp_A 113 MLEKASRELWMRVWSRNE--DITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETT 172 (234)
T ss_dssp GHHHHHHHHHHHHHTSCC--CCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345677888999999754 445678899999999999988788888888887777777643
No 62
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=30.61 E-value=65 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=23.0
Q ss_pred eeeeecCCCCCceeEEEeeccCCCCceeeEecCC
Q 016703 232 KVWTRWPEDNHFYEAVITDYNPNEGRHALVYDIN 265 (384)
Q Consensus 232 rVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g 265 (384)
.|.|+= ++..||+|+|+++ .+..=.|.|+.+
T Consensus 7 ~VEV~~-~~G~~y~a~V~~v--~~d~~~V~f~n~ 37 (128)
T 3h8z_A 7 PVEVRG-SNGAFYKGFVKDV--HEDSVTIFFENN 37 (128)
T ss_dssp EEEEEC-TTSCEEEEEEEEE--CSSEEEEEETTC
T ss_pred EEEEec-CCCCEEEEEEEEE--eCCcEEEEEccc
Confidence 344444 6689999999998 456688999754
No 63
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=28.85 E-value=35 Score=26.32 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.8
Q ss_pred hhHHHHHHHhccCCCChhhHHHHHHHhhhc
Q 016703 354 TLIKEVEKVFAANHPDPTDVEKAKRVLKVS 383 (384)
Q Consensus 354 slikeVervf~~~~pd~~eiekAkk~lke~ 383 (384)
+-|.|+|..+.+..|-+.+++.++.+|++|
T Consensus 16 ~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h 45 (118)
T 3uul_A 16 TWLLSAEDTFQEQDDISDDVEDVKEQFATH 45 (118)
T ss_dssp HHHHHHHHHHHTSCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 347899999998888888999999999987
No 64
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=28.04 E-value=1.3e+02 Score=26.22 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhh
Q 016703 59 QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (384)
Q Consensus 59 ~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~r 118 (384)
.+.+.++.+|++.+. ..+..+..|.++=.+++++.++=..++..+++++....|++..
T Consensus 115 ~~~~~alf~a~~~~~--~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~ 172 (226)
T 1r4w_A 115 EKVSRELWMRIWSRD--EDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETT 172 (226)
T ss_dssp HHHHHHHHHHHHTSC--CCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHH
Confidence 344566777777754 3455667788899999999877888888888887777777654
No 65
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=23.64 E-value=99 Score=23.62 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCC-hHHHHHH--HHHHHHhCCChHHHHHHHHHhchhHHHHHHHHh
Q 016703 48 NDMATQIHSVEQDAYSSVLRAFKAQSDAIT-WEKESLI--TELRKELRVSDEEHRELLSKVNADDIILRIREW 117 (384)
Q Consensus 48 ~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LS-WeKE~LL--TeLR~eL~ISdeEH~~~l~~v~~De~i~~iRe~ 117 (384)
.++..=|+.|.++-|... |.+. .++ ++.-..| .+| ++|+|+.-.||.-+.+. |+.||+.
T Consensus 8 ~~V~~WL~~lgL~~Y~~~---F~~~--~~d~~~~l~~lt~~DL-~~lGI~~~GhrkkIl~a-----i~~l~~~ 69 (81)
T 1ucv_A 8 LTVGDWLDSIRMGRYRDH---FAAG--GYSSLGMVLRMNAQDV-RALGITLMGHQKKILGS-----IQTMRAQ 69 (81)
T ss_dssp SBHHHHHHHTTCGGGHHH---HHHT--TCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHH-----HHHHHHH
T ss_pred chHHHHHHHCCCHHHHHH---HHHc--CCChHHHHHHcCHHHH-HhCCCCChhHHHHHHHH-----HHHHHHH
Confidence 467788899999999654 5442 233 5543333 345 48999999999855433 4556554
No 66
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=22.92 E-value=58 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.3
Q ss_pred CCcccceeeeecCCCCCceeEEEeeccCCCCceeeEecCCC
Q 016703 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINT 266 (384)
Q Consensus 226 ~~LVGrrVkv~WPdDn~wYeg~ItdYn~~tg~H~LvYD~g~ 266 (384)
.+.+|-.|+|.|+|-. -|.|+...++.. ....|.++|++
T Consensus 64 pP~~G~~V~V~W~DG~-~y~a~f~g~~~~-~~YtV~FeDgs 102 (123)
T 2xdp_A 64 PPAEGEVVQVKWPDGK-LYGAKYFGSNIA-HMYQVEFEDGS 102 (123)
T ss_dssp CCCTTCEEEEECTTSC-EEEEEEEEEEEE-EEEEEECTTSC
T ss_pred CCCCCCEEEEEcCCCC-EEeEEEeeeeeE-EEEEEEECCCC
Confidence 3457889999998754 888888887643 45677888886
No 67
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=22.36 E-value=13 Score=33.34 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=22.9
Q ss_pred CCceeeeecccCCccCccccCCCCCcc
Q 016703 268 DETWEWVNLKEISPEDIKWEGDEPGIS 294 (384)
Q Consensus 268 ~EtwEwVdL~e~spedI~W~~e~pgi~ 294 (384)
.+.|-||||..-++++++|..+.-||.
T Consensus 39 ~~~~~Wi~l~~p~~~e~~~l~~~~~l~ 65 (264)
T 3nvo_A 39 SQHPCWLHLNYTHPDSARWLASTPLLP 65 (264)
T ss_dssp TTSCEEEEEETTSHHHHHHHHHCTTSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHhccCCC
Confidence 567899999999999999987766664
No 68
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.35 E-value=36 Score=26.09 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=25.0
Q ss_pred hhHHHHHHHhccCCCChhhHHHHHHHhhhc
Q 016703 354 TLIKEVEKVFAANHPDPTDVEKAKRVLKVS 383 (384)
Q Consensus 354 slikeVervf~~~~pd~~eiekAkk~lke~ 383 (384)
+-|.|+|..+.+..|-+.+++.++.+|++|
T Consensus 16 ~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h 45 (119)
T 3uun_A 16 SWLLSAEDTLQAQGEISNDVEVVKDQFHTH 45 (119)
T ss_dssp HHHHHHHHHHHHHCSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 347899998887777788899999999887
No 69
>4fzm_A Bacteriocin; phosphatase, divalent cation binding, lipid II binding, anti protein; 2.83A {Pseudomonas syringae PV} PDB: 4fzn_A
Probab=20.42 E-value=2.2e+02 Score=27.61 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcc---cccCCCcccchhhHHHHHHHHHHHHHH
Q 016703 14 DLPPSHHNRFQRGVRPTGNGRSA---VIGSASLPRMQNDMATQIHSVEQDAYS 63 (384)
Q Consensus 14 dlpp~~~~r~~r~~~~~gng~~~---~~~~~py~r~~~~~~~~Ih~LE~eAY~ 63 (384)
.|||+|-...+-+ ...||++.- +.+..+|+|.......+-.-||..||+
T Consensus 4 eLPpt~v~~yp~~-~~~g~~~~~g~~~~~g~~~p~~i~~~~~~~~~l~~~a~~ 55 (284)
T 4fzm_A 4 ELPPTYITPYPEI-SAGGNGTYRGQDLSSGQSFPRGMQNPVATVLLLQGDLYC 55 (284)
T ss_dssp CCCTTCCCSSCCS-STTTTTTSSCCCCSCSCSSCTTSCCHHHHHHHHHHHHHT
T ss_pred ecCCeEeecCCCc-ccCCCceeeeeecCCCCCccccccchhhhhheecccEEE
Confidence 4899975322221 334554331 245677899998888999999999994
Done!