BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016705
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38806|HSP22_ARATH 22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2
SV=1
Length = 195
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 121 LTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGM 180
+ L +R + L + W+ + + +D G K +++ + +E L V
Sbjct: 56 IPLGLERDTSVALSPARVDWKETAEGHEIMLDI-----PGLKKDEVKIEVEENGVLRVSG 110
Query: 181 LQKKEQE--GDT--SVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKRLMP 233
+K+E+E GD V++ +G +R F PD VD +++ GVLT+ +L P
Sbjct: 111 ERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLEN-GVLTINLTKLSP 166
>sp|P12811|HS22C_CHLRE Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas
reinhardtii PE=2 SV=1
Length = 157
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 24/100 (24%)
Query: 31 ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSAS--SSISSFFSFLKKNEEARDTSSL 88
A GM +DVK+ +Q+G L++ E SH+ + S + +SF +
Sbjct: 64 APGMGPDDVKVELQEGVLMVTGERKLSHTTKEAGGKVWRSERTAYSFSRA---------- 113
Query: 89 NRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQ 128
FSLP +PDG + +MD GVL +T ++
Sbjct: 114 -----------FSLPENANPDGITAAMDK-GVLVVTVPKR 141
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDG 208
GFV+F+ + AA +++L + +G+ L VG QKK + KQY G
Sbjct: 262 GFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQG 321
Query: 209 VDPF--GFSTSMDDAGVLTLTFKRLMPFLSSTVPEGAFENVIMGWDWEHAKDSRK-GFVD 265
V+ F S+DD + + PF + T + +M + +SR GFV
Sbjct: 322 VNLFVKNLDDSIDDEKLK----EEFAPFGTITSAK------VM---RDETGNSRGFGFVC 368
Query: 266 FKAYLAAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSLKQYEGNNFRSF 316
F A I + I GK L + + ++KE + +Q + N F
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARNQMRF 419
>sp|O49710|HS154_ARATH 15.4 kDa class V heat shock protein OS=Arabidopsis thaliana
GN=HSP15.4 PE=2 SV=1
Length = 134
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 140 WEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNN 199
W + DS VD G + E++ V IE YLI+ D +K +
Sbjct: 30 WSQSPDSHTFSVDL-----PGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFK--- 81
Query: 200 FRSFLFPDGVDPFGFSTSMDDAGVLTLTFKRLM 232
R F P+ +D G S +D + + KR+M
Sbjct: 82 -RKFRLPESIDMIGISAGYEDGVLTVIVPKRIM 113
>sp|Q6SJQ8|HSPB8_MACMU Heat shock protein beta-8 OS=Macaca mulatta GN=HSPB8 PE=2 SV=1
Length = 195
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 162 KIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDA 221
K E+L+V I+ G + G ++K+QEG K + + P VDP S+
Sbjct: 105 KPEELMVKIKDGYVEVSGKHEEKQQEGGIVSKNFT----KKIQLPAEVDPVTVFASLSPE 160
Query: 222 GVLTLTFKRLMPFLSSTVPEGAFEN 246
G+L + ++ P+ ST E +F N
Sbjct: 161 GLLIIEAPQVPPY--STFGESSFNN 183
>sp|Q84Q77|HS17A_ORYSJ 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica
GN=HSP17.9A PE=2 SV=1
Length = 161
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
W+E + FK + G+K+E+VK+ + DG ++ ++ +
Sbjct: 58 WKETPEAHVFKADVP-GLKKEEVKVEVDDGNILQISGERN-------------------- 96
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRA 130
K+ EE D + GK F LP P+ SM++ GVLT+T ++ A
Sbjct: 97 KEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPKEEA 149
>sp|P02519|HSP11_SOYBN 17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B
PE=3 SV=1
Length = 153
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 22/112 (19%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
W+E + FK + G+K+E+VK+ IQDG+++ + S ++
Sbjct: 50 WKETPEAHVFKADIP-GLKKEEVKLEIQDGRVLQI------------SGERNV------- 89
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQ 128
+ E+ DT + GK+ F LP D SM++ GVLT+T ++
Sbjct: 90 -EKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMEN-GVLTVTVPKE 139
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDG 208
GFV+F+ + AA +E+L G+ + VG QKK + + KQY G
Sbjct: 291 GFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQG 350
Query: 209 VDPFGFSTSMD---DAGVLTLTFKRLMPFLSSTVPEGAFENVIMGWDWEHAKDSRKGFVD 265
V+ F ++D D+ L FK SS V M D +K GFV
Sbjct: 351 VN--LFVKNLDEQIDSEKLEEEFKPFGTITSSKV---------MVDDAGKSKGF--GFVC 397
Query: 266 FKAYLAAGTKIEDLMIGIDGGKYLTIGMLEKKE 298
F A I ++ + GK L + + ++K+
Sbjct: 398 FSTPEEATKAITEMNQRMVNGKPLYVALAQRKD 430
>sp|Q84J50|HS177_ORYSJ 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica
GN=HSP17.7 PE=2 SV=1
Length = 159
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
W+E FK + G+K+E+VK+ + DG ++ ++ S
Sbjct: 56 WKETPEVHVFKADVP-GLKKEEVKVEVDDGNILQISGERS-------------------- 94
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQ 128
++ EE D + GK F LP P+ SM++ GVLT+T ++
Sbjct: 95 REQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKE 145
>sp|Q5RAB0|HSPB8_PONAB Heat shock protein beta-8 OS=Pongo abelii GN=HSPB8 PE=2 SV=1
Length = 196
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 162 KIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDA 221
K E+L+V + G + G ++K+QEG K + + P VDP S+
Sbjct: 106 KPEELMVKTKDGYVEVSGKHEEKQQEGGIVSKNFT----KKIQLPAEVDPVTVFASLSPE 161
Query: 222 GVLTLTFKRLMPFLSSTVPEGAFEN 246
G+L + ++ P+ ST E +F N
Sbjct: 162 GLLIIEAPQVPPY--STFGESSFNN 184
>sp|Q9UJY1|HSPB8_HUMAN Heat shock protein beta-8 OS=Homo sapiens GN=HSPB8 PE=1 SV=1
Length = 196
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 162 KIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDA 221
K E+L+V + G + G ++K+QEG K + + P VDP S+
Sbjct: 106 KPEELMVKTKDGYVEVSGKHEEKQQEGGIVSKNFT----KKIQLPAEVDPVTVFASLSPE 161
Query: 222 GVLTLTFKRLMPFLSSTVPEGAFEN 246
G+L + ++ P+ ST E +F N
Sbjct: 162 GLLIIEAPQVPPY--STFGESSFNN 184
>sp|Q943E9|HS17B_ORYSJ 17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica
GN=HSP17.9B PE=2 SV=1
Length = 166
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 130 AFDLRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQ--KKEQE 187
A D A + ++++ + +V F+A L AG K E++ V ++ G L++ + ++E++
Sbjct: 32 ASDTSAFANTYIESRETAEAYV-FRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEK 90
Query: 188 GDTS--VKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKRLM 232
G S +++ F F PD SM D G+LT+T +++
Sbjct: 91 GQRSHHIERSCATFFGRFHLPDDAVVDLVRASM-DGGMLTVTVPKVV 136
>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana
GN=HSP17.8 PE=2 SV=1
Length = 157
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
W+E + FK L GMK+E+VK+ I+D ++ + S +
Sbjct: 52 WKETAEAHVFKADLP-GMKKEEVKVEIEDDSVLKI------------SGERHV------- 91
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLT 124
+ EE +DT + G+ F LP V D SM++ GVLT+T
Sbjct: 92 -EKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMEN-GVLTVT 137
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 23/160 (14%)
Query: 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQ-KKEQEGDTSVKQYHGNNFRSFLFPD 207
GFV F+ + AA I+ + ++ G+ + VG + +KE+E + R+ FP+
Sbjct: 141 GFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGA--------RAKEFPN 192
Query: 208 GVDPFGFSTSMDDAGVLTLTFKRLMPFLSSTVPEGAFENVIMGWDWEHAKDSRKGFVDFK 267
V F MDD + L F + P LS V E K GFV F+
Sbjct: 193 -VYIKNFGEDMDDERLKDL-FGKFGPALSVKV-----------MTDESGKSKGFGFVSFE 239
Query: 268 AYLAAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSLKQ 307
+ A ++++ GK + +G +KK E T LK+
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-ERQTELKR 278
>sp|Q8RG65|GLMS_FUSNN Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=glmS PE=3
SV=3
Length = 607
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 283 IDGGKYLTIGMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAGILTLTF- 341
I G YL G+ EK EG SLK E N + LP G G S ++ + G+L +
Sbjct: 464 IKNGFYLGRGIDEKVAREG--SLKMKEINYIHTEALPAGELKHG-SIALIEKGVLVVAIS 520
Query: 342 TILKPNKKLVSKSK-LLAGMARVVPAC 367
T L+ ++K+VS K + A A VV AC
Sbjct: 521 TNLEMDEKVVSNIKEVKARGAYVVGAC 547
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDG 208
GFV+F + A +E+L RG+ L VG QKK + + K Y G
Sbjct: 289 GFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQG 348
Query: 209 VDPF--GFSTSMDDAGVLTLTFKRLMPFLSS-----TVPEGAFENVIMGWDWEH 255
V+ + + +DD L F P S+ V EG+ E G D E+
Sbjct: 349 VNLYIKNLADDIDD-DKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKEN 401
>sp|P02515|HSP22_DROME Heat shock protein 22 OS=Drosophila melanogaster GN=Hsp22 PE=1 SV=4
Length = 174
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 144 KDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNF-RS 202
KD K +D K Y K+ D VV+ GK Q+ EQ G Y +F R
Sbjct: 61 KDGYKLTLDVKDYSELKVKVLDESVVLVEGK----SEQQEAEQGG------YSSRHFLRR 110
Query: 203 FLFPDGVDPFGFSTSMDDAGVLTLT 227
F+ P+G + ++++ GVLT++
Sbjct: 111 FVLPEGYEADKVTSTLSSDGVLTIS 135
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 239 VPEGAFENVIMGWDWEHAKDSRKGFVDFKAYLAAGTKIEDLMIGIDGGKYLTIGMLEKKE 298
P GA ++ + D E K GFV+++ + AA +E+L G+ + +G +KK
Sbjct: 254 TPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKR 312
Query: 299 HEGDTSLKQYE 309
+ KQYE
Sbjct: 313 ERMEELKKQYE 323
>sp|Q00WL5|LONM_OSTTA Lon protease homolog, mitochondrial OS=Ostreococcus tauri
GN=Ot13g03180 PE=3 SV=1
Length = 863
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 307 QYEGNNFRSFLLPDGLGPFGYSTSMDDAGILTLTFTILKPNKKLVSKSKLLAGMARVVPA 366
QY NF F P L G S D L +L +L + +LL +
Sbjct: 246 QYFAQNFNDFQDPPKLADLGASMCSADDAQLQRVLELLSVKDRLDATLELLKKEVEIGKL 305
Query: 367 CLMIGCEISDKISGD 381
IG ++ DKISGD
Sbjct: 306 QADIGKKVEDKISGD 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,397,158
Number of Sequences: 539616
Number of extensions: 6355698
Number of successful extensions: 16456
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 16392
Number of HSP's gapped (non-prelim): 103
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)