Query 016705
Match_columns 384
No_of_seqs 112 out of 1063
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 5.2E-24 1.1E-28 187.3 13.5 109 8-144 29-140 (142)
2 COG0071 IbpA Molecular chapero 99.9 5.8E-24 1.3E-28 184.1 13.3 106 9-138 38-145 (146)
3 PRK10743 heat shock protein Ib 99.9 1.7E-23 3.7E-28 182.5 12.6 101 10-138 33-136 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 3.8E-23 8.3E-28 165.8 11.3 91 13-127 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 2.7E-22 5.8E-27 160.3 11.3 93 12-127 1-93 (93)
6 cd06470 ACD_IbpA-B_like Alpha- 99.9 3E-21 6.6E-26 155.4 11.6 89 12-127 1-90 (90)
7 PF00011 HSP20: Hsp20/alpha cr 99.9 8E-21 1.7E-25 152.5 12.9 98 15-138 1-101 (102)
8 cd06497 ACD_alphaA-crystallin_ 99.8 1.3E-19 2.8E-24 146.2 10.6 82 15-127 4-86 (86)
9 cd06482 ACD_HspB10 Alpha cryst 99.8 2.6E-19 5.6E-24 146.2 9.4 82 19-127 6-87 (87)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 5.6E-19 1.2E-23 141.3 10.6 82 15-127 1-83 (83)
11 cd06479 ACD_HspB7_like Alpha c 99.8 2.8E-19 6E-24 144.0 8.6 79 15-127 2-81 (81)
12 cd06498 ACD_alphaB-crystallin_ 99.8 1.3E-18 2.8E-23 140.0 10.5 82 16-128 2-84 (84)
13 cd06464 ACD_sHsps-like Alpha-c 99.8 3.3E-18 7.1E-23 131.2 10.9 88 15-127 1-88 (88)
14 cd06475 ACD_HspB1_like Alpha c 99.8 3.5E-18 7.5E-23 137.9 10.8 82 14-126 3-85 (86)
15 cd06481 ACD_HspB9_like Alpha c 99.8 4.2E-18 9.1E-23 137.7 9.2 83 18-127 4-87 (87)
16 cd06476 ACD_HspB2_like Alpha c 99.7 7.1E-18 1.5E-22 135.9 10.1 81 16-127 2-83 (83)
17 cd06526 metazoan_ACD Alpha-cry 99.7 4.9E-18 1.1E-22 134.3 8.6 77 21-127 7-83 (83)
18 cd06477 ACD_HspB3_Like Alpha c 99.7 5.4E-17 1.2E-21 131.4 9.0 79 17-126 3-82 (83)
19 KOG0710 Molecular chaperone (s 99.6 2.2E-15 4.7E-20 138.0 7.8 101 9-131 82-183 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.5 7.2E-14 1.6E-18 115.4 9.4 86 12-127 6-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.4 4.2E-12 9E-17 115.4 11.5 99 12-140 63-163 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 3.9E-12 8.5E-17 92.8 9.2 80 16-127 1-80 (80)
23 cd06481 ACD_HspB9_like Alpha c 99.3 1.6E-11 3.4E-16 99.5 9.1 85 146-230 2-87 (87)
24 cd06480 ACD_HspB8_like Alpha-c 99.2 2.3E-11 4.9E-16 100.6 7.6 72 153-228 17-89 (91)
25 cd06498 ACD_alphaB-crystallin_ 99.1 2E-10 4.3E-15 92.7 8.3 76 151-231 9-84 (84)
26 cd06479 ACD_HspB7_like Alpha c 99.1 1.6E-10 3.4E-15 93.4 5.9 72 151-230 10-81 (81)
27 cd06478 ACD_HspB4-5-6 Alpha-cr 99.1 6E-10 1.3E-14 89.4 8.7 75 150-229 8-82 (83)
28 cd06476 ACD_HspB2_like Alpha c 99.1 3.2E-10 6.9E-15 91.6 7.1 69 158-230 15-83 (83)
29 cd06469 p23_DYX1C1_like p23_li 99.0 1.1E-09 2.5E-14 84.1 8.8 72 16-131 1-72 (78)
30 cd06475 ACD_HspB1_like Alpha c 99.0 1.1E-09 2.5E-14 88.5 6.5 73 151-228 12-84 (86)
31 cd06526 metazoan_ACD Alpha-cry 99.0 1.8E-09 4E-14 85.5 6.9 74 151-229 9-82 (83)
32 cd06497 ACD_alphaA-crystallin_ 98.9 2.3E-09 4.9E-14 86.8 6.8 74 151-229 12-85 (86)
33 cd06477 ACD_HspB3_Like Alpha c 98.9 4.7E-09 1E-13 85.3 7.4 74 151-229 9-82 (83)
34 cd06482 ACD_HspB10 Alpha cryst 98.9 9.9E-09 2.2E-13 84.2 8.7 75 151-227 10-84 (87)
35 KOG3591 Alpha crystallins [Pos 98.8 1.1E-08 2.5E-13 93.2 8.1 87 139-232 63-150 (173)
36 PF00011 HSP20: Hsp20/alpha cr 98.8 3.6E-08 7.7E-13 79.3 8.6 78 150-231 8-88 (102)
37 cd06463 p23_like Proteins cont 98.7 1.2E-07 2.6E-12 71.5 9.6 75 17-130 2-76 (84)
38 cd06472 ACD_ScHsp26_like Alpha 98.7 5.3E-08 1.1E-12 78.4 7.1 77 150-229 10-91 (92)
39 cd06464 ACD_sHsps-like Alpha-c 98.7 6.8E-08 1.5E-12 74.1 7.2 77 151-229 9-87 (88)
40 PF05455 GvpH: GvpH; InterPro 98.6 4.3E-07 9.4E-12 83.8 10.6 79 10-132 90-172 (177)
41 cd06466 p23_CS_SGT1_like p23_l 98.4 1.8E-06 4E-11 66.8 7.9 78 15-131 1-78 (84)
42 cd06471 ACD_LpsHSP_like Group 98.4 1.1E-06 2.4E-11 70.4 6.7 76 150-229 11-92 (93)
43 cd06470 ACD_IbpA-B_like Alpha- 98.3 2.7E-06 5.8E-11 68.8 6.9 76 149-230 11-90 (90)
44 PRK11597 heat shock chaperone 98.2 4.9E-06 1.1E-10 74.0 6.8 77 150-232 44-123 (142)
45 PF04969 CS: CS domain; Inter 98.1 4.9E-05 1.1E-09 57.1 11.0 77 12-127 1-79 (79)
46 COG0071 IbpA Molecular chapero 98.0 2.2E-05 4.8E-10 68.5 7.3 82 150-233 51-135 (146)
47 cd00298 ACD_sHsps_p23-like Thi 98.0 5.4E-05 1.2E-09 55.1 8.2 74 149-229 6-79 (80)
48 PRK10743 heat shock protein Ib 97.9 2.1E-05 4.5E-10 69.4 6.6 77 149-231 45-124 (137)
49 cd06465 p23_hB-ind1_like p23_l 97.7 0.00042 9.2E-09 57.3 10.5 81 12-132 1-82 (108)
50 cd06489 p23_CS_hSgt1_like p23_ 97.4 0.0013 2.9E-08 51.9 8.5 78 15-131 1-78 (84)
51 PF08190 PIH1: pre-RNA process 97.3 0.0019 4.1E-08 61.7 9.9 66 20-126 260-327 (328)
52 cd06488 p23_melusin_like p23_l 97.0 0.0087 1.9E-07 48.2 9.9 80 13-131 2-81 (87)
53 cd06468 p23_CacyBP p23_like do 96.9 0.013 2.7E-07 46.8 9.7 80 13-131 3-86 (92)
54 cd06467 p23_NUDC_like p23_like 96.4 0.037 7.9E-07 43.2 9.3 76 14-130 1-77 (85)
55 cd06493 p23_NUDCD1_like p23_NU 96.3 0.069 1.5E-06 42.6 10.4 76 14-131 1-78 (85)
56 cd06494 p23_NUDCD2_like p23-li 95.9 0.097 2.1E-06 43.6 9.8 82 8-131 2-84 (93)
57 cd00237 p23 p23 binds heat sho 95.8 0.16 3.5E-06 43.1 10.8 79 12-131 2-80 (106)
58 PLN03088 SGT1, suppressor of 95.6 0.078 1.7E-06 52.5 9.7 83 10-131 155-237 (356)
59 cd06469 p23_DYX1C1_like p23_li 95.5 0.095 2.1E-06 40.2 7.9 64 149-231 6-69 (78)
60 KOG1309 Suppressor of G2 allel 94.9 0.076 1.6E-06 50.3 6.7 85 10-133 2-86 (196)
61 KOG0710 Molecular chaperone (s 94.4 0.036 7.8E-07 51.5 3.3 76 158-235 102-184 (196)
62 cd06490 p23_NCB5OR p23_like do 93.4 1.1 2.3E-05 36.4 9.7 78 14-132 1-82 (87)
63 cd06463 p23_like Proteins cont 92.0 1.1 2.3E-05 33.6 7.5 69 150-232 7-75 (84)
64 cd06492 p23_mNUDC_like p23-lik 81.4 11 0.00024 30.8 8.0 74 16-131 3-80 (87)
65 PF04969 CS: CS domain; Inter 75.9 30 0.00065 25.7 8.7 67 149-228 10-77 (79)
66 cd06493 p23_NUDCD1_like p23_NU 75.7 23 0.00049 28.2 8.0 66 150-230 9-74 (85)
67 cd06466 p23_CS_SGT1_like p23_l 74.9 18 0.00039 27.8 7.1 69 149-231 7-75 (84)
68 cd06495 p23_NUDCD3_like p23-li 73.8 36 0.00078 29.0 9.2 80 11-129 4-86 (102)
69 TIGR03653 arch_L6P archaeal ri 68.6 64 0.0014 29.8 10.3 19 36-54 7-25 (170)
70 cd06492 p23_mNUDC_like p23-lik 66.0 40 0.00087 27.5 7.6 65 151-230 10-76 (87)
71 TIGR03654 L6_bact ribosomal pr 65.5 35 0.00077 31.4 8.0 38 163-208 117-155 (175)
72 cd06465 p23_hB-ind1_like p23_l 63.7 59 0.0013 26.9 8.3 66 150-230 11-76 (108)
73 CHL00140 rpl6 ribosomal protei 63.6 25 0.00055 32.5 6.8 38 163-208 118-156 (178)
74 PRK05518 rpl6p 50S ribosomal p 63.2 91 0.002 29.2 10.3 19 36-54 13-31 (180)
75 PF13349 DUF4097: Domain of un 59.5 55 0.0012 28.0 7.7 64 110-180 86-149 (166)
76 PF13349 DUF4097: Domain of un 57.9 71 0.0015 27.3 8.1 28 96-124 120-147 (166)
77 cd06467 p23_NUDC_like p23_like 54.9 56 0.0012 25.3 6.4 67 95-185 9-76 (85)
78 PRK05498 rplF 50S ribosomal pr 54.5 65 0.0014 29.7 7.8 38 163-208 118-156 (178)
79 cd06495 p23_NUDCD3_like p23-li 48.8 29 0.00063 29.6 4.2 68 151-230 16-84 (102)
80 COG5091 SGT1 Suppressor of G2 46.9 11 0.00024 38.4 1.7 87 8-132 173-259 (368)
81 cd06489 p23_CS_hSgt1_like p23_ 44.9 1.4E+02 0.003 23.4 7.3 67 150-230 8-74 (84)
82 PF04972 BON: BON domain; Int 42.7 47 0.001 24.5 4.1 25 31-55 11-35 (64)
83 cd01724 Sm_D1 The eukaryotic S 42.5 52 0.0011 27.4 4.7 52 270-323 18-74 (90)
84 COG0097 RplF Ribosomal protein 41.6 1.6E+02 0.0034 28.0 8.2 43 163-213 118-161 (178)
85 cd06494 p23_NUDCD2_like p23-li 39.6 1.1E+02 0.0023 25.6 6.2 66 95-185 16-82 (93)
86 cd01721 Sm_D3 The eukaryotic S 36.5 69 0.0015 25.2 4.3 49 270-320 17-70 (70)
87 PF10974 DUF2804: Protein of u 36.3 1.9E+02 0.0042 28.9 8.4 70 95-172 87-157 (333)
88 cd01459 vWA_copine_like VWA Co 33.3 26 0.00056 34.3 1.8 20 265-285 21-40 (254)
89 PF04972 BON: BON domain; Int 28.7 69 0.0015 23.6 3.0 27 157-183 10-36 (64)
90 PF12992 DUF3876: Domain of un 25.7 1.8E+02 0.0038 24.9 5.3 43 9-52 23-69 (95)
91 cd06468 p23_CacyBP p23_like do 23.9 3.6E+02 0.0079 21.2 8.5 68 96-185 13-84 (92)
92 PF08190 PIH1: pre-RNA process 23.9 4.9E+02 0.011 25.1 8.6 66 148-228 260-326 (328)
93 PF09116 gp45-slide_C: gp45 sl 22.0 92 0.002 27.5 3.0 24 157-180 17-40 (112)
94 PF14913 DPCD: DPCD protein fa 21.7 5.4E+02 0.012 25.0 8.2 79 9-129 84-170 (194)
95 KOG2265 Nuclear distribution p 20.6 1.9E+02 0.0041 27.7 4.9 62 95-179 29-92 (179)
96 PF10988 DUF2807: Protein of u 20.5 5.3E+02 0.011 22.4 7.5 41 96-138 21-62 (181)
97 KOG1667 Zn2+-binding protein M 20.4 3.3E+02 0.0072 27.9 6.8 87 11-135 214-300 (320)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.91 E-value=5.2e-24 Score=187.34 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCCCeeeEEE-eCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCce
Q 016705 8 KKPDPVSAIWE-EDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTS 86 (384)
Q Consensus 8 ~~~~P~VDV~E-TDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~ 86 (384)
....|++||+| ++++|+|++ +|||++|+||+|+++++.|+|+|+++.+. +. .+|
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~a--dlPGv~kedi~V~v~~~~LtI~ge~~~~~---~~--------------------~~~ 83 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITL--ALAGFRQEDLDIQLEGTRLTVKGTPEQPE---KE--------------------VKW 83 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEE--EeCCCCHHHeEEEEECCEEEEEEEEcccc---CC--------------------CcE
Confidence 45679999998 577999999 99999999999999999999999975321 11 258
Q ss_pred EEeecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeec--CCCCcceEEecccccc
Q 016705 87 SLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQ--RAFDLRNVAMGWEHAK 144 (384)
Q Consensus 87 ~~rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~--epe~~RrIaIg~~~~~ 144 (384)
+++||++|+|+|+|.||++||.+ +|+|+| |||+|+|||. +..++|+|+|.-.+|-
T Consensus 84 ~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n-GVL~I~lPK~~~~~~~~rkI~I~~~~~~ 140 (142)
T PRK11597 84 LHQGLVNQPFSLSFTLAENMEVS--GATFVN-GLLHIDLIRNEPEAIAPQRIAISERPAL 140 (142)
T ss_pred EEEEEeCcEEEEEEECCCCcccC--cCEEcC-CEEEEEEeccCccccCCcEEEECCcccc
Confidence 99999999999999999999998 799999 9999999997 5567899999755543
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.8e-24 Score=184.08 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=95.5
Q ss_pred CCCCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEE
Q 016705 9 KPDPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSL 88 (384)
Q Consensus 9 ~~~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~ 88 (384)
...|++||+|++++|+|++ +||||+++||+|+++++.|+|+|+++.+..... ..++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~--elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~---------------------~~~~~ 94 (146)
T COG0071 38 TGTPPVDIEETDDEYRITA--ELPGVDKEDIEITVEGNTLTIRGEREEEEEEEE---------------------EGYLR 94 (146)
T ss_pred CCCCcEEEEEcCCEEEEEE--EcCCCChHHeEEEEECCEEEEEEEecccccccC---------------------CceEE
Confidence 4789999999999999999 999999999999999999999999976332221 25888
Q ss_pred eecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC--CcceEEe
Q 016705 89 NRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF--DLRNVAM 138 (384)
Q Consensus 89 rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe--~~RrIaI 138 (384)
+||.+|+|+|+|+||..|+++.++|+|+| |||+|+|||..++ ..++|+|
T Consensus 95 ~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n-GvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 95 RERAYGEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred EEEEeeeEEEEEECcccccccceeeEeeC-cEEEEEEeccccccccCceeec
Confidence 99999999999999999999999999999 9999999999998 5777776
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.90 E-value=1.7e-23 Score=182.50 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=88.7
Q ss_pred CCCeeeEEE-eCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEE
Q 016705 10 PDPVSAIWE-EDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSL 88 (384)
Q Consensus 10 ~~P~VDV~E-TDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~ 88 (384)
..|++||++ ++++|+|.| +|||++|+||+|+++++.|+|+|+++.+. .+ .+|++
T Consensus 33 ~~p~~di~ee~~~~~~v~a--elPGv~kedi~V~v~~~~LtI~ge~~~~~--~~---------------------~~~~~ 87 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAI--AVAGFAESELEITAQDNLLVVKGAHADEQ--KE---------------------RTYLY 87 (137)
T ss_pred CCCcEEEEEcCCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEECccc--cC---------------------CcEEE
Confidence 349999995 899999999 99999999999999999999999975432 11 15888
Q ss_pred eecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeec--CCCCcceEEe
Q 016705 89 NRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQ--RAFDLRNVAM 138 (384)
Q Consensus 89 rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~--epe~~RrIaI 138 (384)
+||++|+|+|+|.||++||.+ +|+|+| |||+|++||. +..++|+|+|
T Consensus 88 ~Er~~g~F~R~~~LP~~Vd~~--~A~~~d-GVL~I~lPK~~~~~~~~r~I~I 136 (137)
T PRK10743 88 QGIAERNFERKFQLAENIHVR--GANLVN-GLLYIDLERVIPEAKKPRRIEI 136 (137)
T ss_pred EEEECCEEEEEEECCCCcccC--cCEEeC-CEEEEEEeCCCccccCCeEEee
Confidence 999999999999999999999 499999 9999999997 4467788887
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.90 E-value=3.8e-23 Score=165.85 Aligned_cols=91 Identities=29% Similarity=0.374 Sum_probs=81.6
Q ss_pred eeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECC-EEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 13 VSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDG-KLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 13 ~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVddd-vLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
++||+|++++|+|.+ +|||++|+||+|+++++ .|+|+|++..+.... ..+++.+||
T Consensus 1 ~~dv~E~~~~~~i~~--~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~---------------------~~~~~~~e~ 57 (92)
T cd06472 1 RVDWKETPEAHVFKA--DVPGVKKEDVKVEVEDGRVLRISGERKKEEEKK---------------------GDDWHRVER 57 (92)
T ss_pred CccEEEcCCeEEEEE--ECCCCChHhEEEEEeCCCEEEEEEEeccccccc---------------------CCCEEEEEE
Confidence 489999999999999 99999999999999875 899999986443211 126889999
Q ss_pred ccceEEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
.+|+|+|+|+||.+|++++|+|+|+| |||+|++||
T Consensus 58 ~~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~lPK 92 (92)
T cd06472 58 SSGRFVRRFRLPENADADEVKAFLEN-GVLTVTVPK 92 (92)
T ss_pred eccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999 999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.88 E-value=2.7e-22 Score=160.31 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=82.4
Q ss_pred CeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 12 PVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 12 P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
|++||+|+++.|+|.+ +|||++++||+|+++++.|+|+|+++......+. ..+++++||
T Consensus 1 ~~~di~e~~~~~~i~~--~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~-------------------~~~~~~~e~ 59 (93)
T cd06471 1 MKTDIKETDDEYIVEA--DLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDK-------------------KGNYIRRER 59 (93)
T ss_pred CceeEEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEccccccccc-------------------cCCEEEEee
Confidence 5799999999999999 9999999999999999999999999754322111 115888999
Q ss_pred ccceEEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
.+|+|+|+|.|| ++++++++|+|+| |+|+|++||
T Consensus 60 ~~g~f~r~~~lp-~v~~~~i~A~~~d-GvL~I~lPK 93 (93)
T cd06471 60 YYGSFSRSFYLP-NVDEEEIKAKYEN-GVLKITLPK 93 (93)
T ss_pred eccEEEEEEECC-CCCHHHCEEEEEC-CEEEEEEcC
Confidence 999999999999 7999999999999 999999998
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.86 E-value=3e-21 Score=155.40 Aligned_cols=89 Identities=16% Similarity=0.276 Sum_probs=79.7
Q ss_pred CeeeEEEeC-CeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEee
Q 016705 12 PVSAIWEED-ERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNR 90 (384)
Q Consensus 12 P~VDV~ETD-DeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rE 90 (384)
|++||+|++ ++|++.+ +|||++|+||+|+++++.|+|+|+++.... .. .+|+.+|
T Consensus 1 p~~di~e~~~~~~~v~~--~lPG~~kedi~v~~~~~~L~I~g~~~~~~~-~~---------------------~~~~~~e 56 (90)
T cd06470 1 PPYNIEKTGENNYRITL--AVAGFSEDDLEIEVENNQLTVTGKKADEEN-EE---------------------REYLHRG 56 (90)
T ss_pred CCeeeEEcCCCeEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEccccc-CC---------------------CcEEEEE
Confidence 789999975 9999999 999999999999999999999999876543 11 2588899
Q ss_pred cccceEEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 91 PNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 91 Rs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
|.+|+|+|+|.||.++|.+ +|+|+| |+|+|++|+
T Consensus 57 ~~~g~f~R~~~LP~~vd~~--~A~~~~-GvL~I~l~~ 90 (90)
T cd06470 57 IAKRAFERSFNLADHVKVK--GAELEN-GLLTIDLER 90 (90)
T ss_pred EeceEEEEEEECCCCceEC--eeEEeC-CEEEEEEEC
Confidence 9999999999999999975 899999 999999986
No 7
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.85 E-value=8e-21 Score=152.51 Aligned_cols=98 Identities=28% Similarity=0.432 Sum_probs=80.3
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
||.|++++|.|.+ +|||++++||+|+++++.|+|+|++..... . ..+..+|++++
T Consensus 1 di~e~~~~~~i~~--~lpG~~~edi~I~~~~~~L~I~g~~~~~~~--~---------------------~~~~~~~~~~~ 55 (102)
T PF00011_consen 1 DIKEDEDEYIIKV--DLPGFDKEDIKIKVDDNKLVISGKRKEEEE--D---------------------DRYYRSERRYG 55 (102)
T ss_dssp EEEESSSEEEEEE--E-TTS-GGGEEEEEETTEEEEEEEEEGEEC--T---------------------TCEEEE-S-SE
T ss_pred CeEECCCEEEEEE--ECCCCChHHEEEEEecCccceeceeeeeee--e---------------------eeeeecccccc
Confidence 8999999999998 999999999999999999999999981111 1 14677899999
Q ss_pred eEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC---CcceEEe
Q 016705 95 KIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF---DLRNVAM 138 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe---~~RrIaI 138 (384)
+|.|+|+||.++|+++|+|.|+| |+|+|++||.... ++|+|+|
T Consensus 56 ~f~r~~~lP~~vd~~~i~a~~~~-GvL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 56 SFERSIRLPEDVDPDKIKASYEN-GVLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp EEEEEEE-STTB-GGG-EEEETT-SEEEEEEEBSSSCTTSSSCEE-E
T ss_pred eEEEEEcCCCcCCcceEEEEecC-CEEEEEEEccccccCCCCeEEEe
Confidence 99999999999999999999999 9999999999987 5788887
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.81 E-value=1.3e-19 Score=146.21 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=71.7
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
+|+++++.|.|.+ +||||+|+||+|++.++.|+|+|++..... +. .|.++
T Consensus 4 ~v~e~~~~~~v~~--dlpG~~~edi~V~v~~~~L~I~g~~~~~~~--~~---------------------~~~~~----- 53 (86)
T cd06497 4 EVRSDRDKFTIYL--DVKHFSPEDLTVKVLDDYVEIHGKHSERQD--DH---------------------GYISR----- 53 (86)
T ss_pred eEEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcceeC--CC---------------------CEEEE-----
Confidence 7999999999999 999999999999999999999998643221 11 35555
Q ss_pred eEEEEEECCCCcccCcceEEe-ecCcEEEEEEee
Q 016705 95 KIEMNFSLPVGVDPDGFSTSM-DDAGVLTLTFKR 127 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsL-eNdGVLTITLPK 127 (384)
+|+|+|+||++||+++|+|+| +| |||+|++||
T Consensus 54 ef~R~~~LP~~Vd~~~i~A~~~~d-GvL~I~~PK 86 (86)
T cd06497 54 EFHRRYRLPSNVDQSAITCSLSAD-GMLTFSGPK 86 (86)
T ss_pred EEEEEEECCCCCChHHeEEEeCCC-CEEEEEecC
Confidence 499999999999999999999 68 999999998
No 9
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.80 E-value=2.6e-19 Score=146.15 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=72.0
Q ss_pred eCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccceEEE
Q 016705 19 EDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKIEM 98 (384)
Q Consensus 19 TDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~GsFsR 98 (384)
++++|+|.+ +|||++|+||+|++.++.|+|+|+++...... . .+||++|+|+|
T Consensus 6 ~~~~~~v~a--dlPG~~kedI~V~v~~~~L~I~ger~~~~e~~-~------------------------~~er~~g~F~R 58 (87)
T cd06482 6 DSSNVLASV--DVCGFEPDQVKVKVKDGKVQVSAERENRYDCL-G------------------------SKKYSYMNICK 58 (87)
T ss_pred cCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEecccccC-C------------------------ccEEEEEEEEE
Confidence 578999999 99999999999999999999999987553211 1 14889999999
Q ss_pred EEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 99 NFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 99 sI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
+|+||.+||.++|+|+|+|+|||+|.-|.
T Consensus 59 ~f~LP~~Vd~d~i~A~~~~~~~l~i~~~~ 87 (87)
T cd06482 59 EFSLPPGVDEKDVTYSYGLGSVVKIETPC 87 (87)
T ss_pred EEECCCCcChHHcEEEEcCCCEEEEeeCC
Confidence 99999999999999999998899999873
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.79 E-value=5.6e-19 Score=141.28 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=70.4
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
+|.+++++|.|.+ +||||+|+||+|++.++.|+|+|++..... + ..|+++
T Consensus 1 ~~~~~~~~~~v~~--dlpG~~~edI~V~v~~~~L~I~g~~~~~~~--~---------------------~~~~~~----- 50 (83)
T cd06478 1 EVRLDKDRFSVNL--DVKHFSPEELSVKVLGDFVEIHGKHEERQD--E---------------------HGFISR----- 50 (83)
T ss_pred CeeecCceEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEceEcC--C---------------------CCEEEE-----
Confidence 3678999999999 999999999999999999999998643221 1 135555
Q ss_pred eEEEEEECCCCcccCcceEEe-ecCcEEEEEEee
Q 016705 95 KIEMNFSLPVGVDPDGFSTSM-DDAGVLTLTFKR 127 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsL-eNdGVLTITLPK 127 (384)
+|+|+|+||.+||+++|+|+| +| |||+|++||
T Consensus 51 ef~R~~~LP~~vd~~~i~A~~~~d-GvL~I~~PK 83 (83)
T cd06478 51 EFHRRYRLPPGVDPAAITSSLSAD-GVLTISGPR 83 (83)
T ss_pred EEEEEEECCCCcChHHeEEEECCC-CEEEEEecC
Confidence 499999999999999999999 58 999999998
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.79 E-value=2.8e-19 Score=143.96 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=71.3
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
||.|++++|.|.+ +|||++||||+|+++++.|+|+|+++.+. ++.+|
T Consensus 2 ~v~e~~~~~~v~~--dlpG~~pedi~V~v~~~~L~I~ger~~~~-------------------------------~~~~g 48 (81)
T cd06479 2 NVKTLGDTYQFAV--DVSDFSPEDIIVTTSNNQIEVHAEKLASD-------------------------------GTVMN 48 (81)
T ss_pred CccCcCCeEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEeccC-------------------------------CCEEE
Confidence 7899999999999 99999999999999999999999985221 12468
Q ss_pred eEEEEEECCCCcccCcceEEe-ecCcEEEEEEee
Q 016705 95 KIEMNFSLPVGVDPDGFSTSM-DDAGVLTLTFKR 127 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsL-eNdGVLTITLPK 127 (384)
+|+|+|.||.+||+++|+|+| +| |+|+|+++|
T Consensus 49 ~F~R~~~LP~~vd~e~v~A~l~~~-GvL~I~~~~ 81 (81)
T cd06479 49 TFTHKCQLPEDVDPTSVSSSLGED-GTLTIKARR 81 (81)
T ss_pred EEEEEEECCCCcCHHHeEEEecCC-CEEEEEecC
Confidence 999999999999999999998 88 999999986
No 12
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.78 E-value=1.3e-18 Score=140.03 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=70.1
Q ss_pred EEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccce
Q 016705 16 IWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGK 95 (384)
Q Consensus 16 V~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~Gs 95 (384)
+.+++++|.|.+ +||||+|+||+|++.++.|+|+|++..... +. .++.+ +
T Consensus 2 ~~~~~~~~~v~~--dlpG~~~edi~V~v~~~~L~I~g~~~~~~~--~~---------------------~~~~~-----e 51 (84)
T cd06498 2 MRLEKDKFSVNL--DVKHFSPEELKVKVLGDFIEIHGKHEERQD--EH---------------------GFISR-----E 51 (84)
T ss_pred eEeCCceEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcceeC--CC---------------------CEEEE-----E
Confidence 578899999999 999999999999999999999998643221 11 24444 5
Q ss_pred EEEEEECCCCcccCcceEEee-cCcEEEEEEeec
Q 016705 96 IEMNFSLPVGVDPDGFSTSMD-DAGVLTLTFKRQ 128 (384)
Q Consensus 96 FsRsI~LPe~VD~dkIkAsLe-NdGVLTITLPK~ 128 (384)
|+|+|.||.+||+++|+|+|+ | |||+|++||.
T Consensus 52 F~R~~~LP~~vd~~~i~A~~~~d-GvL~I~lPk~ 84 (84)
T cd06498 52 FQRKYRIPADVDPLTITSSLSPD-GVLTVCGPRK 84 (84)
T ss_pred EEEEEECCCCCChHHcEEEeCCC-CEEEEEEeCC
Confidence 999999999999999999996 8 9999999984
No 13
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.77 E-value=3.3e-18 Score=131.17 Aligned_cols=88 Identities=31% Similarity=0.501 Sum_probs=79.1
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
|++|++++|++.+ +|||+++++|+|++.++.|.|+|++........ .+..+|+.++
T Consensus 1 ~i~e~~~~~~i~~--~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~----------------------~~~~~~~~~~ 56 (88)
T cd06464 1 DVYETDDAYVVEA--DLPGFKKEDIKVEVEDGVLTISGEREEEEEEEE----------------------NYLRRERSYG 56 (88)
T ss_pred CcEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEecccccCC----------------------cEEEEEEeCc
Confidence 5789999999988 999999999999999999999999875543211 3667889999
Q ss_pred eEEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 95 KIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
.|.|+|.||..+|+++++|+|+| |+|+|++||
T Consensus 57 ~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~pk 88 (88)
T cd06464 57 SFSRSFRLPEDVDPDKIKASLEN-GVLTITLPK 88 (88)
T ss_pred EEEEEEECCCCcCHHHcEEEEeC-CEEEEEEcC
Confidence 99999999999999999999999 999999997
No 14
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.76 E-value=3.5e-18 Score=137.93 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=70.7
Q ss_pred eeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeeccc
Q 016705 14 SAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPND 93 (384)
Q Consensus 14 VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~ 93 (384)
-||+|+++.|.|.+ +|||++|+||+|++.++.|+|+|++..+.. +. .+. .
T Consensus 3 ~~i~e~~~~~~v~~--dlPG~~~edi~V~v~~~~L~I~g~~~~~~~--~~---------------------~~~-----~ 52 (86)
T cd06475 3 SEIRQTADRWKVSL--DVNHFAPEELVVKTKDGVVEITGKHEEKQD--EH---------------------GFV-----S 52 (86)
T ss_pred ceEEEcCCeEEEEE--ECCCCCHHHEEEEEECCEEEEEEEECcCcC--CC---------------------CEE-----E
Confidence 48999999999999 999999999999999999999998743211 11 122 2
Q ss_pred ceEEEEEECCCCcccCcceEEee-cCcEEEEEEe
Q 016705 94 GKIEMNFSLPVGVDPDGFSTSMD-DAGVLTLTFK 126 (384)
Q Consensus 94 GsFsRsI~LPe~VD~dkIkAsLe-NdGVLTITLP 126 (384)
++|+|+|.||.+||+++|+|+|+ | |||+|++|
T Consensus 53 ~~f~R~f~LP~~vd~~~v~A~~~~d-GvL~I~lP 85 (86)
T cd06475 53 RCFTRKYTLPPGVDPTAVTSSLSPD-GILTVEAP 85 (86)
T ss_pred EEEEEEEECCCCCCHHHcEEEECCC-CeEEEEec
Confidence 38999999999999999999997 8 99999998
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.75 E-value=4.2e-18 Score=137.70 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=69.5
Q ss_pred EeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccceEE
Q 016705 18 EEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKIE 97 (384)
Q Consensus 18 ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~GsFs 97 (384)
+..+.|.|.+ +|||++|+||+|+++++.|+|+|++......... .|. +.+|+|+
T Consensus 4 ~~~d~~~v~~--dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~---------------------~~~---~~~~~F~ 57 (87)
T cd06481 4 DGKEGFSLKL--DVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKG---------------------SFS---YEYQEFV 57 (87)
T ss_pred CccceEEEEE--ECCCCChHHeEEEEECCEEEEEEEEeeecccCCC---------------------cEE---EEeeEEE
Confidence 3467899988 9999999999999999999999998644322111 232 3478999
Q ss_pred EEEECCCCcccCcceEEe-ecCcEEEEEEee
Q 016705 98 MNFSLPVGVDPDGFSTSM-DDAGVLTLTFKR 127 (384)
Q Consensus 98 RsI~LPe~VD~dkIkAsL-eNdGVLTITLPK 127 (384)
|+|.||.+||.+.|+|+| +| |||+|++|+
T Consensus 58 R~~~LP~~Vd~~~i~A~~~~d-GvL~I~~P~ 87 (87)
T cd06481 58 REAQLPEHVDPEAVTCSLSPS-GHLHIRAPR 87 (87)
T ss_pred EEEECCCCcChHHeEEEeCCC-ceEEEEcCC
Confidence 999999999999999999 88 999999996
No 16
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.75 E-value=7.1e-18 Score=135.87 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=68.3
Q ss_pred EEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccce
Q 016705 16 IWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGK 95 (384)
Q Consensus 16 V~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~Gs 95 (384)
+.-++++|.|.+ +|||++|+||+|++.++.|+|+|++..... .. .+.. ++
T Consensus 2 ~~~~~d~y~v~~--dlpG~~~edi~V~v~~~~L~I~g~~~~~~~--~~---------------------~~~~-----~e 51 (83)
T cd06476 2 VESEDDKYQVFL--DVCHFTPDEITVRTVDNLLEVSARHPQRMD--RH---------------------GFVS-----RE 51 (83)
T ss_pred eeccCCeEEEEE--EcCCCCHHHeEEEEECCEEEEEEEEcceec--CC---------------------CEEE-----EE
Confidence 345788999999 999999999999999999999999753221 11 1333 36
Q ss_pred EEEEEECCCCcccCcceEEee-cCcEEEEEEee
Q 016705 96 IEMNFSLPVGVDPDGFSTSMD-DAGVLTLTFKR 127 (384)
Q Consensus 96 FsRsI~LPe~VD~dkIkAsLe-NdGVLTITLPK 127 (384)
|+|+|.||.+||+++|+|+|+ | |||+|++||
T Consensus 52 F~R~~~LP~~vd~~~v~A~~~~d-GvL~I~~Pr 83 (83)
T cd06476 52 FTRTYILPMDVDPLLVRASLSHD-GILCIQAPR 83 (83)
T ss_pred EEEEEECCCCCChhhEEEEecCC-CEEEEEecC
Confidence 999999999999999999997 7 999999997
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.74 E-value=4.9e-18 Score=134.27 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=67.5
Q ss_pred CeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccceEEEEE
Q 016705 21 ERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKIEMNF 100 (384)
Q Consensus 21 DeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~GsFsRsI 100 (384)
+.|++.+ +||||+++||+|+++++.|+|+|++..... . .++.+++|+|+|
T Consensus 7 ~~~~v~~--dlpG~~~edI~v~v~~~~L~I~g~~~~~~~---~-------------------------~~~~~~~f~r~~ 56 (83)
T cd06526 7 EKFQVTL--DVKGFKPEELKVKVSDNKLVVEGKHEERED---E-------------------------HGYVSREFTRRY 56 (83)
T ss_pred eeEEEEE--ECCCCCHHHcEEEEECCEEEEEEEEeeecc---C-------------------------CCEEEEEEEEEE
Confidence 5899988 999999999999999999999999865432 1 123457999999
Q ss_pred ECCCCcccCcceEEeecCcEEEEEEee
Q 016705 101 SLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 101 ~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
+||.+||+++++|+|.|||+|+|++||
T Consensus 57 ~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 57 QLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred ECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 999999999999999988999999997
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.70 E-value=5.4e-17 Score=131.40 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=67.2
Q ss_pred EEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccceE
Q 016705 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKI 96 (384)
Q Consensus 17 ~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~GsF 96 (384)
.|+++.|+|++ +||||+|+||+|++.++.|+|+|++..+.. +. .+.. ++|
T Consensus 3 ~e~~~~~~v~~--dlpG~~~edI~V~v~~~~L~I~ge~~~~~~--~~---------------------~~~~-----r~F 52 (83)
T cd06477 3 EEGKPMFQILL--DVVQFRPEDIIIQVFEGWLLIKGQHGVRMD--EH---------------------GFIS-----RSF 52 (83)
T ss_pred ccCCceEEEEE--EcCCCCHHHeEEEEECCEEEEEEEEccccC--CC---------------------CEEE-----EEE
Confidence 46889999999 999999999999999999999999865331 11 1222 289
Q ss_pred EEEEECCCCcccCcceEEe-ecCcEEEEEEe
Q 016705 97 EMNFSLPVGVDPDGFSTSM-DDAGVLTLTFK 126 (384)
Q Consensus 97 sRsI~LPe~VD~dkIkAsL-eNdGVLTITLP 126 (384)
+|+|+||.+|++++|+|+| +| |||+|+.|
T Consensus 53 ~R~~~LP~~Vd~~~v~A~~~~d-GvL~I~~~ 82 (83)
T cd06477 53 TRQYQLPDGVEHKDLSAMLCHD-GILVVETK 82 (83)
T ss_pred EEEEECCCCcchheEEEEEcCC-CEEEEEec
Confidence 9999999999999999998 67 99999976
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.2e-15 Score=138.01 Aligned_cols=101 Identities=25% Similarity=0.314 Sum_probs=89.1
Q ss_pred CCCCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECC-EEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceE
Q 016705 9 KPDPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDG-KLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSS 87 (384)
Q Consensus 9 ~~~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVddd-vLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~ 87 (384)
...+++|+.|++++|++.+ ++||+.+++++|+++++ +|+|+|++..+...... .+.++
T Consensus 82 ~~~~~~~v~e~~~~~~~~~--~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~-------------------~~~~~ 140 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKV--DLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGS-------------------GKKWK 140 (196)
T ss_pred cccCCcccccCCCceEEEe--eCCCCCchhceEEeccCcEEEEecccccccccccC-------------------Cccce
Confidence 3567789999999999988 99999999999999987 79999999876653211 12578
Q ss_pred EeecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 88 LNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 88 ~rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
..|+.+|.|.|+|.||++++.++|+|.|+| |||+|++||..+.
T Consensus 141 ~~E~~~g~F~r~~~lPenv~~d~ikA~~~n-GVL~VvvpK~~~~ 183 (196)
T KOG0710|consen 141 RVERKLGKFKRRFELPENVDVDEIKAEMEN-GVLTVVVPKLEPL 183 (196)
T ss_pred eehhcccceEeeecCCccccHHHHHHHhhC-CeEEEEEeccccc
Confidence 889999999999999999999999999999 9999999999983
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.51 E-value=7.2e-14 Score=115.43 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=70.8
Q ss_pred CeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 12 PVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 12 P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
|+=-+..+++.|.|.+ ++.||++|||+|++.++.|+|+|++..... +. .+..
T Consensus 6 ~~~~~~~~~~~f~v~l--dv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~--e~---------------------g~~~--- 57 (91)
T cd06480 6 PRNPPPNSSEPWKVCV--NVHSFKPEELTVKTKDGFVEVSGKHEEQQK--EG---------------------GIVS--- 57 (91)
T ss_pred ccCCCCCCCCcEEEEE--EeCCCCHHHcEEEEECCEEEEEEEECcccC--CC---------------------CEEE---
Confidence 3334567888999988 999999999999999999999999864432 11 1222
Q ss_pred ccceEEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
++|+|+|.||.+||++.|+|+|..||+|+|++|.
T Consensus 58 --r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 58 --KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred --EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcCC
Confidence 4899999999999999999999955999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.2e-12 Score=115.44 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=84.4
Q ss_pred CeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 12 PVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 12 P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
...++..+++.|.|.+ |+..|+||+|+|.+.++.|.|.|+...... +. -+..|
T Consensus 63 ~~~~~~~~~~~F~V~l--DV~~F~PeEl~Vk~~~~~l~V~gkHeer~d--~~---------------------G~v~R-- 115 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNL--DVHQFKPEELKVKTDDNTLEVEGKHEEKED--EH---------------------GYVSR-- 115 (173)
T ss_pred cccccccCCCcEEEEE--EcccCcccceEEEeCCCEEEEEeeeccccC--CC---------------------CeEEE--
Confidence 3567888999999988 999999999999999999999998765542 11 13333
Q ss_pred ccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCC--cceEEecc
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFD--LRNVAMGW 140 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~--~RrIaIg~ 140 (384)
+|.|++.||.+||++.|+++|.+||+|+|+.||.+..+ .|.|+|-.
T Consensus 116 ---~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 116 ---SFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred ---EEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 79999999999999999999999999999999999775 78888853
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.37 E-value=3.9e-12 Score=92.85 Aligned_cols=80 Identities=29% Similarity=0.510 Sum_probs=69.6
Q ss_pred EEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccce
Q 016705 16 IWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGK 95 (384)
Q Consensus 16 V~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~Gs 95 (384)
++++++.+.+++ ++||+.+++++|++.++.|+|+|++..... .+...+.
T Consensus 1 ~~q~~~~v~i~i--~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-----------------------------~~~~~~~ 49 (80)
T cd00298 1 WYQTDDEVVVTV--DLPGVKKEDIKVEVEDNVLTISGKREEEEE-----------------------------RERSYGE 49 (80)
T ss_pred CEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcCCCc-----------------------------ceEeeee
Confidence 468889999988 999999999999999999999998753322 1233458
Q ss_pred EEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 96 IEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 96 FsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
|.+.+.||..+++++++|++.+ |+|+|++||
T Consensus 50 ~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l~K 80 (80)
T cd00298 50 FERSFELPEDVDPEKSKASLEN-GVLEITLPK 80 (80)
T ss_pred EEEEEECCCCcCHHHCEEEEEC-CEEEEEEcC
Confidence 9999999999999999999999 999999997
No 23
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.29 E-value=1.6e-11 Score=99.53 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=65.9
Q ss_pred CCCceEEEEEeec-ccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeE
Q 016705 146 SKKGFVDFKAYLA-AGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVL 224 (384)
Q Consensus 146 ~~~g~~~~~~~~~-~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~ 224 (384)
++.|+=++++.++ |||++|||.|.++.|.++|+|.+++.+.+.....--.+++|.|+|.+|+.||+-.++|++-.||||
T Consensus 2 ~~~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL 81 (87)
T cd06481 2 GKDGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHL 81 (87)
T ss_pred CCCccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceE
Confidence 4566655555555 699999999999999999999866543222111111248899999999999999999999999999
Q ss_pred EEEehh
Q 016705 225 TLTFKR 230 (384)
Q Consensus 225 ~~~~~~ 230 (384)
+++.-|
T Consensus 82 ~I~~P~ 87 (87)
T cd06481 82 HIRAPR 87 (87)
T ss_pred EEEcCC
Confidence 998654
No 24
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.24 E-value=2.3e-11 Score=100.64 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=58.6
Q ss_pred EEEeec-ccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 153 FKAYLA-AGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 153 ~~~~~~-~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
++|.|| .+|++|||+|.++.|+++|+|+|..++.++. . +..+|.|+|.+|+.|||..++|++..+|+|+++.
T Consensus 17 f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g--~--~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 17 WKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGG--I--VSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCC--E--EEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 334443 6999999999999999999999776543322 1 2367779999999999999999999999999864
No 25
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.14 E-value=2e-10 Score=92.75 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=61.2
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEehh
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKR 230 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~~ 230 (384)
+.|++.| ||+++|||.|.++.|.+.|+|.+.. +.+. . ..++.+|.|+|.+|+.|||=.++|++..||||+++..|
T Consensus 9 ~~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~-~~~~-~--~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 9 FSVNLDV-KHFSPEELKVKVLGDFIEIHGKHEE-RQDE-H--GFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred EEEEEEC-CCCCHHHeEEEEECCEEEEEEEEcc-eeCC-C--CEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 5555655 9999999999999999999997533 2221 1 12446677999999999999999999999999999876
Q ss_pred h
Q 016705 231 L 231 (384)
Q Consensus 231 ~ 231 (384)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 3
No 26
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.09 E-value=1.6e-10 Score=93.35 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=59.6
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEehh
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKR 230 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~~ 230 (384)
+.|++-| |+|++|||+|.|+.|.+.|+|..+ ..++ .+.+.|.|+|.+|+.|||=.++|++..|||||++..|
T Consensus 10 ~~v~~dl-pG~~pedi~V~v~~~~L~I~ger~--~~~~-----~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 10 YQFAVDV-SDFSPEDIIVTTSNNQIEVHAEKL--ASDG-----TVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred EEEEEEC-CCCCHHHeEEEEECCEEEEEEEEe--ccCC-----CEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4444433 799999999999999999999632 2221 2448999999999999999999999999999999876
No 27
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.08 E-value=6e-10 Score=89.36 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=60.0
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
.+.|++.| |||++|||.|.++.|.+.|+|.+.. +.++. . .++.+|.|+|.+|+.|||=.++|++..||||+++..
T Consensus 8 ~~~v~~dl-pG~~~edI~V~v~~~~L~I~g~~~~-~~~~~-~--~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 8 RFSVNLDV-KHFSPEELSVKVLGDFVEIHGKHEE-RQDEH-G--FISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred eEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEce-EcCCC-C--EEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 35666766 8999999999999999999997432 22211 1 134567799999999999999999999999999864
No 28
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.07 E-value=3.2e-10 Score=91.61 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=57.0
Q ss_pred cccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEehh
Q 016705 158 AAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKR 230 (384)
Q Consensus 158 ~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~~ 230 (384)
-|||++|||.|.++.|.+.|+|.+.. +.++.. . ++.+|.|+|.+|+.|||-.++|++..+|||+++.-|
T Consensus 15 lpG~~~edi~V~v~~~~L~I~g~~~~-~~~~~~-~--~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 15 VCHFTPDEITVRTVDNLLEVSARHPQ-RMDRHG-F--VSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCCCHHHeEEEEECCEEEEEEEEcc-eecCCC-E--EEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 38999999999999999999998643 222211 1 336778999999999999999999999999998754
No 29
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.05 E-value=1.1e-09 Score=84.09 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=65.1
Q ss_pred EEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccce
Q 016705 16 IWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGK 95 (384)
Q Consensus 16 V~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~Gs 95 (384)
++++++.+.|++ ++||+++++++|+++++.|.|++ . .
T Consensus 1 W~Qt~~~v~i~i--~~p~v~~~~v~v~~~~~~l~i~~---------~--------------------------------~ 37 (78)
T cd06469 1 WSQTDEDVKISV--PLKGVKTSKVDIFCSDLYLKVNF---------P--------------------------------P 37 (78)
T ss_pred CcccCCEEEEEE--EeCCCccccceEEEecCEEEEcC---------C--------------------------------C
Confidence 367888998887 99999999999999999999976 1 3
Q ss_pred EEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 96 IEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 96 FsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
|.+.+.||..|++++.+|++.+ |.|.|++||..+.
T Consensus 38 ~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~~~ 72 (78)
T cd06469 38 YLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKEPG 72 (78)
T ss_pred EEEEEeCcccccccccEEEEeC-CEEEEEEEeCCCC
Confidence 8899999999999999999999 9999999998764
No 30
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.97 E-value=1.1e-09 Score=88.52 Aligned_cols=73 Identities=26% Similarity=0.351 Sum_probs=58.8
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
+.+++.| |||++|||.|.++.|.++|+|.++.++.+ .. . ++..|.|+|.+|+.|||=.++|++..||||+++.
T Consensus 12 ~~v~~dl-PG~~~edi~V~v~~~~L~I~g~~~~~~~~-~~-~--~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~l 84 (86)
T cd06475 12 WKVSLDV-NHFAPEELVVKTKDGVVEITGKHEEKQDE-HG-F--VSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEA 84 (86)
T ss_pred EEEEEEC-CCCCHHHEEEEEECCEEEEEEEECcCcCC-CC-E--EEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEe
Confidence 4444443 89999999999999999999986543222 21 1 3467889999999999999999999999999986
No 31
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.95 E-value=1.8e-09 Score=85.46 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=60.0
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
+.+++.| |||++|||.|.++.|++.|+|..+.. .+ ... ..+++|.|+|.+|+.|||=.++|++.++|+|+++..
T Consensus 9 ~~v~~dl-pG~~~edI~v~v~~~~L~I~g~~~~~-~~--~~~-~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 9 FQVTLDV-KGFKPEELKVKVSDNKLVVEGKHEER-ED--EHG-YVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEC-CCCCHHHcEEEEECCEEEEEEEEeee-cc--CCC-EEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 5566665 58999999999999999999974432 22 111 234788899999999999999999999999999864
No 32
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=98.93 E-value=2.3e-09 Score=86.82 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=58.4
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
+.|++.| ||+++|||.|.++.|.+.|+|.+.. ++++ .. .++.+|.|+|.+|+.|||=.++|++..||||+++..
T Consensus 12 ~~v~~dl-pG~~~edi~V~v~~~~L~I~g~~~~-~~~~-~~--~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 12 FTIYLDV-KHFSPEDLTVKVLDDYVEIHGKHSE-RQDD-HG--YISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEEEEEC-CCCCHHHeEEEEECCEEEEEEEEcc-eeCC-CC--EEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 4444433 8999999999999999999998533 2221 11 134567799999999999999999999999999864
No 33
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.90 E-value=4.7e-09 Score=85.31 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=58.6
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
+.|++.| |||++|||.|.++.|.+.|+|.++... +... . ++..|.|+|.+|+.||+=.++|++-.||||+++-|
T Consensus 9 ~~v~~dl-pG~~~edI~V~v~~~~L~I~ge~~~~~-~~~~-~--~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 9 FQILLDV-VQFRPEDIIIQVFEGWLLIKGQHGVRM-DEHG-F--ISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEc-CCCCHHHeEEEEECCEEEEEEEEcccc-CCCC-E--EEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 4444443 899999999999999999999754422 2211 1 23578899999999999999999999999999864
No 34
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.87 E-value=9.9e-09 Score=84.15 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=61.2
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEE
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLT 227 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~ 227 (384)
+.|++-| ||+++|||.|.|+.|.+.|+|..+..+.+.....+ +++.|.|+|.+|+.||+=.++|++.+.|||++.
T Consensus 10 ~~v~adl-PG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er-~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 10 VLASVDV-CGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKY-SYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred EEEEEEC-CCCCHHHeEEEEECCEEEEEEEEecccccCCccEE-EEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 6666655 79999999999999999999985443322233344 449999999999999999999999999999984
No 35
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.1e-08 Score=93.15 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=71.8
Q ss_pred ccccccCCCCce-EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEE
Q 016705 139 GWEHAKDSKKGF-VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTS 217 (384)
Q Consensus 139 g~~~~~~~~~g~-~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~ 217 (384)
|.......++|| |.+.| .-|+||+|.|.++.|.++|.|+|..++.++...+| +|.|.|.+|++|||-+|+++
T Consensus 63 ~~~~~~~~~~~F~V~lDV---~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R----~F~R~y~LP~~vdp~~V~S~ 135 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDV---HQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSR----SFVRKYLLPEDVDPTSVTST 135 (173)
T ss_pred cccccccCCCcEEEEEEc---ccCcccceEEEeCCCEEEEEeeeccccCCCCeEEE----EEEEEecCCCCCChhheEEe
Confidence 444455566666 55444 47999999999999999999999988777777774 56899999999999999999
Q ss_pred EecceeEEEEehhhc
Q 016705 218 MDDAGVLTLTFKRLM 232 (384)
Q Consensus 218 ~~d~~~~~~~~~~~~ 232 (384)
|.-.|+||+.-...-
T Consensus 136 LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 136 LSSDGVLTIEAPKPP 150 (173)
T ss_pred eCCCceEEEEccCCC
Confidence 999999999866543
No 36
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=98.77 E-value=3.6e-08 Score=79.33 Aligned_cols=78 Identities=32% Similarity=0.472 Sum_probs=55.4
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcce---eeeccccceEeeCCCccCcceeeEEEecceeEEE
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSV---KQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTL 226 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~---k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~ 226 (384)
.+.+++.| ||+.+|||.|.++.|.++|+|... .+.+..... ..+ +.|.|+|.+|+.+|+-.++|.+ .||+|++
T Consensus 8 ~~~i~~~l-pG~~~edi~I~~~~~~L~I~g~~~-~~~~~~~~~~~~~~~-~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I 83 (102)
T PF00011_consen 8 EYIIKVDL-PGFDKEDIKIKVDDNKLVISGKRK-EEEEDDRYYRSERRY-GSFERSIRLPEDVDPDKIKASY-ENGVLTI 83 (102)
T ss_dssp EEEEEEE--TTS-GGGEEEEEETTEEEEEEEEE-GEECTTCEEEE-S-S-EEEEEEEE-STTB-GGG-EEEE-TTSEEEE
T ss_pred EEEEEEEC-CCCChHHEEEEEecCccceeceee-eeeeeeeeeeccccc-ceEEEEEcCCCcCCcceEEEEe-cCCEEEE
Confidence 34444544 599999999999999999999866 222222221 112 5778999999999999999999 9999999
Q ss_pred Eehhh
Q 016705 227 TFKRL 231 (384)
Q Consensus 227 ~~~~~ 231 (384)
++.+.
T Consensus 84 ~~pk~ 88 (102)
T PF00011_consen 84 TIPKK 88 (102)
T ss_dssp EEEBS
T ss_pred EEEcc
Confidence 97654
No 37
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.72 E-value=1.2e-07 Score=71.51 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=66.0
Q ss_pred EEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccceE
Q 016705 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKI 96 (384)
Q Consensus 17 ~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~GsF 96 (384)
+++++.+.|.+ .+||+.+++++|.++++.|+|++... .. +.|
T Consensus 2 ~Q~~~~v~i~v--~~~~~~~~~~~v~~~~~~l~i~~~~~------~~------------------------------~~~ 43 (84)
T cd06463 2 YQTLDEVTITI--PLKDVTKKDVKVEFTPKSLTVSVKGG------GG------------------------------KEY 43 (84)
T ss_pred cccccEEEEEE--EcCCCCccceEEEEecCEEEEEeeCC------CC------------------------------Cce
Confidence 57888888877 99999999999999999999998642 11 158
Q ss_pred EEEEECCCCcccCcceEEeecCcEEEEEEeecCC
Q 016705 97 EMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRA 130 (384)
Q Consensus 97 sRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~ep 130 (384)
.+.+.|+..|++++.++++.+ |.|.|+|+|..+
T Consensus 44 ~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~~ 76 (84)
T cd06463 44 LLEGELFGPIDPEESKWTVED-RKIEITLKKKEP 76 (84)
T ss_pred EEeeEccCccchhhcEEEEeC-CEEEEEEEECCC
Confidence 889999999999999999999 999999999887
No 38
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.69 E-value=5.3e-08 Score=78.38 Aligned_cols=77 Identities=31% Similarity=0.415 Sum_probs=57.2
Q ss_pred eEEEEEeecccCCccceEEEEeCC-eEEEEeeeeeeeccCCc----ceeeeccccceEeeCCCccCcceeeEEEecceeE
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERG-KYLIVGMLQKKEQEGDT----SVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVL 224 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~-~~~v~g~~~k~~~~~~~----~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~ 224 (384)
.+.+.+.| ||+++|||.|.++.| .+.|+|.....+..... ..+.| +.|.|+|.+|+.||+=.++|++. ||||
T Consensus 10 ~~~i~~~l-PGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~-g~f~r~i~LP~~v~~~~i~A~~~-nGvL 86 (92)
T cd06472 10 AHVFKADV-PGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSS-GRFVRRFRLPENADADEVKAFLE-NGVL 86 (92)
T ss_pred eEEEEEEC-CCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEec-cEEEEEEECCCCCCHHHCEEEEE-CCEE
Confidence 35555555 889999999999976 68899974332211111 12223 78889999999999999999997 5999
Q ss_pred EEEeh
Q 016705 225 TLTFK 229 (384)
Q Consensus 225 ~~~~~ 229 (384)
++++.
T Consensus 87 ~I~lP 91 (92)
T cd06472 87 TVTVP 91 (92)
T ss_pred EEEec
Confidence 99874
No 39
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.68 E-value=6.8e-08 Score=74.05 Aligned_cols=77 Identities=35% Similarity=0.493 Sum_probs=59.7
Q ss_pred EEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCC--cceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGD--TSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 151 ~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~--~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
+.+++.| |++++|||.|.++.++++|+|.......... .+.....++|.|+|.+|+.+|+-.++|++.+ |+|++++
T Consensus 9 ~~i~~~l-pg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~ 86 (88)
T cd06464 9 YVVEADL-PGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITL 86 (88)
T ss_pred EEEEEEC-CCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEE
Confidence 4445554 7899999999999999999997554333221 1122234888899999999999999999999 9999987
Q ss_pred h
Q 016705 229 K 229 (384)
Q Consensus 229 ~ 229 (384)
.
T Consensus 87 p 87 (88)
T cd06464 87 P 87 (88)
T ss_pred c
Confidence 5
No 40
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.57 E-value=4.3e-07 Score=83.82 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=63.9
Q ss_pred CCCeeeEEEeCC-eEEEEEeccCCCCCCCC-eEEEEECC--EEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCc
Q 016705 10 PDPVSAIWEEDE-RSVHFKVFLASGMKQED-VKIVIQDG--KLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDT 85 (384)
Q Consensus 10 ~~P~VDV~ETDD-eyII~A~FDLPGVkKED-IsIeVddd--vLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~ 85 (384)
..|.+|+.+.++ +.+|.| ||||+++++ |+|.++.+ .|+|+..
T Consensus 90 ~~~~vdtre~dDge~~VvA--dLPGVs~dd~idV~l~~d~~~L~i~~~-------------------------------- 135 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVA--DLPGVSDDDAIDVTLDDDEGALTIRVG-------------------------------- 135 (177)
T ss_pred ceeeeeeEecCCCcEEEEE--eCCCCCcccceeeEeecCCceEEEecC--------------------------------
Confidence 467789999777 688999 999999888 99999855 4555321
Q ss_pred eEEeecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCC
Q 016705 86 SSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFD 132 (384)
Q Consensus 86 ~~~rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~ 132 (384)
+.+.+++.||.. +++.++|+|+| |||+|++-+....+
T Consensus 136 --------~~~~krv~L~~~-~~e~~~~t~nN-gILEIri~~~~~~~ 172 (177)
T PF05455_consen 136 --------EKYLKRVALPWP-DPEITSATFNN-GILEIRIRRTEESS 172 (177)
T ss_pred --------CceEeeEecCCC-ccceeeEEEeC-ceEEEEEeecCCCC
Confidence 136789999977 68899999999 99999999887653
No 41
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.37 E-value=1.8e-06 Score=66.84 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=67.8
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
|++++++.+.|.+ .+||+.++++.|+++++.|.|+.... .+ .
T Consensus 1 dW~Qt~~~v~i~v--~~~~~~~~~v~v~~~~~~l~i~~~~~------~~------------------------------~ 42 (84)
T cd06466 1 DWYQTDTSVTVTI--YAKNVDKEDVKVEFNEQSLSVSIILP------GG------------------------------S 42 (84)
T ss_pred CccccCCEEEEEE--EECCCCHHHCEEEEecCEEEEEEECC------CC------------------------------C
Confidence 6889999998877 99999999999999999999987531 11 1
Q ss_pred eEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 95 KIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
.|...+.|+..|+++..++.+.+ |.|.|+|.|..+.
T Consensus 43 ~~~~~~~L~~~I~~~~s~~~~~~-~~vei~L~K~~~~ 78 (84)
T cd06466 43 EYQLELDLFGPIDPEQSKVSVLP-TKVEITLKKAEPG 78 (84)
T ss_pred eEEEecccccccCchhcEEEEeC-eEEEEEEEcCCCC
Confidence 58888999999999999999999 9999999998763
No 42
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=98.36 E-value=1.1e-06 Score=70.39 Aligned_cols=76 Identities=29% Similarity=0.372 Sum_probs=56.6
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCc------ceeeeccccceEeeCCCccCcceeeEEEeccee
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDT------SVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGV 223 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~------~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~ 223 (384)
.+.+++.| ||++.|||.|.+++|.+.|+|......++.+. ..+ .+++|.|+|.+| .||+=.++|++ .|||
T Consensus 11 ~~~i~~~l-PGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~-~~g~f~r~~~lp-~v~~~~i~A~~-~dGv 86 (93)
T cd06471 11 EYIVEADL-PGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRER-YYGSFSRSFYLP-NVDEEEIKAKY-ENGV 86 (93)
T ss_pred EEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEee-eccEEEEEEECC-CCCHHHCEEEE-ECCE
Confidence 35555555 59999999999999999999974332211111 112 236788999999 69999999999 8899
Q ss_pred EEEEeh
Q 016705 224 LTLTFK 229 (384)
Q Consensus 224 ~~~~~~ 229 (384)
|++++.
T Consensus 87 L~I~lP 92 (93)
T cd06471 87 LKITLP 92 (93)
T ss_pred EEEEEc
Confidence 999974
No 43
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=98.27 E-value=2.7e-06 Score=68.80 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=55.9
Q ss_pred ceEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcc----eeeeccccceEeeCCCccCcceeeEEEecceeE
Q 016705 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTS----VKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVL 224 (384)
Q Consensus 149 g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~----~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~ 224 (384)
+.+.+++.| ||++.|||-|.++.|.+.|+|.....+. .+.. ...+ +.|.|+|.+|+.+|+- +|++ .||||
T Consensus 11 ~~~~v~~~l-PG~~kedi~v~~~~~~L~I~g~~~~~~~-~~~~~~~~e~~~-g~f~R~~~LP~~vd~~--~A~~-~~GvL 84 (90)
T cd06470 11 NNYRITLAV-AGFSEDDLEIEVENNQLTVTGKKADEEN-EEREYLHRGIAK-RAFERSFNLADHVKVK--GAEL-ENGLL 84 (90)
T ss_pred CeEEEEEEC-CCCCHHHeEEEEECCEEEEEEEEccccc-CCCcEEEEEEec-eEEEEEEECCCCceEC--eeEE-eCCEE
Confidence 346666665 7999999999999999999998544322 1111 1112 6788999999999983 7765 67999
Q ss_pred EEEehh
Q 016705 225 TLTFKR 230 (384)
Q Consensus 225 ~~~~~~ 230 (384)
++++.|
T Consensus 85 ~I~l~~ 90 (90)
T cd06470 85 TIDLER 90 (90)
T ss_pred EEEEEC
Confidence 999864
No 44
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=98.15 E-value=4.9e-06 Score=73.96 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=56.5
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCC---cceeeeccccceEeeCCCccCcceeeEEEecceeEEE
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGD---TSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTL 226 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~---~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~ 226 (384)
.+.|++.| ||++.|||.|.|+.|.+.|+|..+. +.++. -+.+.| +.|.|+|.+|+.||+= +|++ +||||++
T Consensus 44 ~y~v~adl-PGv~kedi~V~v~~~~LtI~ge~~~-~~~~~~~~~~Er~~-g~F~R~f~LP~~vd~~--~A~~-~nGVL~I 117 (142)
T PRK11597 44 HYRITLAL-AGFRQEDLDIQLEGTRLTVKGTPEQ-PEKEVKWLHQGLVN-QPFSLSFTLAENMEVS--GATF-VNGLLHI 117 (142)
T ss_pred EEEEEEEe-CCCCHHHeEEEEECCEEEEEEEEcc-ccCCCcEEEEEEeC-cEEEEEEECCCCcccC--cCEE-cCCEEEE
Confidence 35666665 6999999999999999999997322 21111 112223 6788999999999996 6776 5799999
Q ss_pred Eehhhc
Q 016705 227 TFKRLM 232 (384)
Q Consensus 227 ~~~~~~ 232 (384)
++.+..
T Consensus 118 ~lPK~~ 123 (142)
T PRK11597 118 DLIRNE 123 (142)
T ss_pred EEeccC
Confidence 987653
No 45
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.14 E-value=4.9e-05 Score=57.13 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=64.0
Q ss_pred CeeeEEEeCCeEEEEEeccCCCC--CCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEe
Q 016705 12 PVSAIWEEDERSVHFKVFLASGM--KQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLN 89 (384)
Q Consensus 12 P~VDV~ETDDeyII~A~FDLPGV--kKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~r 89 (384)
|+++++++++...|.+ .+++. +++|++|+++++.|.|+......
T Consensus 1 ~~y~W~Qt~~~V~v~i--~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------------------------------- 46 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTI--PVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------------------------------- 46 (79)
T ss_dssp SSEEEEEESSEEEEEE--E-TTTTSSGGGEEEEEETTEEEEEEEETTS--------------------------------
T ss_pred CCeEEEECCCEEEEEE--EEcCCCCChHHeEEEEEeeEEEEEEEccCC--------------------------------
Confidence 7899999999999887 99654 59999999999999998643111
Q ss_pred ecccceEEEEEECCCCcccCcceEEeecCcEEEEEEee
Q 016705 90 RPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127 (384)
Q Consensus 90 ERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK 127 (384)
..|...+.|...|++++.+..+.+ +.|.|+|.|
T Consensus 47 ----~~~~~~~~L~~~I~~~~s~~~~~~-~~i~i~L~K 79 (79)
T PF04969_consen 47 ----KEYLLEGELFGEIDPDESTWKVKD-NKIEITLKK 79 (79)
T ss_dssp ----CEEEEEEEBSS-BECCCEEEEEET-TEEEEEEEB
T ss_pred ----ceEEEEEEEeeeEcchhcEEEEEC-CEEEEEEEC
Confidence 157788889999999999999999 999999987
No 46
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.2e-05 Score=68.50 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=62.2
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeee---eccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEE
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKK---EQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTL 226 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~---~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~ 226 (384)
.+.|.+.| ||++.|||-|.++.|.+.|+|..... +.++--...-+.++|-|.|.+|+.|||=.+.|++ .||||++
T Consensus 51 ~~~I~~el-PG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~nGvL~I 128 (146)
T COG0071 51 EYRITAEL-PGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTV 128 (146)
T ss_pred EEEEEEEc-CCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-eCcEEEE
Confidence 46666665 89999999999999999999975431 1111111111237888999999999999888887 5899999
Q ss_pred Eehhhcc
Q 016705 227 TFKRLMP 233 (384)
Q Consensus 227 ~~~~~~~ 233 (384)
++.|.-|
T Consensus 129 ~lpk~~~ 135 (146)
T COG0071 129 TLPKAEP 135 (146)
T ss_pred EEecccc
Confidence 9988765
No 47
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=97.97 E-value=5.4e-05 Score=55.10 Aligned_cols=74 Identities=32% Similarity=0.460 Sum_probs=58.4
Q ss_pred ceEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 149 g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
+.+.+++++.. +.++|++|.++.+++.|+|.+...+. .+..+ .++.+++.+|+.+||-..++.+.+ +.|++++
T Consensus 6 ~~v~i~i~~~~-~~~~~i~v~~~~~~l~v~~~~~~~~~----~~~~~-~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l 78 (80)
T cd00298 6 DEVVVTVDLPG-VKKEDIKVEVEDNVLTISGKREEEEE----RERSY-GEFERSFELPEDVDPEKSKASLEN-GVLEITL 78 (80)
T ss_pred CEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEcCCCc----ceEee-eeEEEEEECCCCcCHHHCEEEEEC-CEEEEEE
Confidence 46788888755 67999999999999999997443222 22223 566789999999999999999998 8888876
Q ss_pred h
Q 016705 229 K 229 (384)
Q Consensus 229 ~ 229 (384)
.
T Consensus 79 ~ 79 (80)
T cd00298 79 P 79 (80)
T ss_pred c
Confidence 4
No 48
>PRK10743 heat shock protein IbpA; Provisional
Probab=97.94 E-value=2.1e-05 Score=69.36 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=56.4
Q ss_pred ceEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCc---ceeeeccccceEeeCCCccCcceeeEEEecceeEE
Q 016705 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDT---SVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLT 225 (384)
Q Consensus 149 g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~---~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~ 225 (384)
..+.|++.| ||++.|||.|.|+.|.+.|+|..+. +.+... ..+ +.+.|.|+|.+|+.||+= +|++ .||||+
T Consensus 45 ~~~~v~ael-PGv~kedi~V~v~~~~LtI~ge~~~-~~~~~~~~~~Er-~~g~F~R~~~LP~~Vd~~--~A~~-~dGVL~ 118 (137)
T PRK10743 45 NHYRIAIAV-AGFAESELEITAQDNLLVVKGAHAD-EQKERTYLYQGI-AERNFERKFQLAENIHVR--GANL-VNGLLY 118 (137)
T ss_pred CEEEEEEEC-CCCCHHHeEEEEECCEEEEEEEECc-cccCCcEEEEEE-ECCEEEEEEECCCCcccC--cCEE-eCCEEE
Confidence 346666655 6999999999999999999997332 221110 111 226788999999999996 4776 579999
Q ss_pred EEehhh
Q 016705 226 LTFKRL 231 (384)
Q Consensus 226 ~~~~~~ 231 (384)
+++.+.
T Consensus 119 I~lPK~ 124 (137)
T PRK10743 119 IDLERV 124 (137)
T ss_pred EEEeCC
Confidence 998664
No 49
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.72 E-value=0.00042 Score=57.33 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=68.5
Q ss_pred CeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 12 PVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 12 P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
|.++++++.+...|.+ .+|++ ++++|+++.+.|.|++.-.. ..
T Consensus 1 p~~~W~Qt~~~V~i~i--~~~~~--~~~~V~~~~~~l~v~~~~~~-----~~---------------------------- 43 (108)
T cd06465 1 PPVLWAQRSDVVYLTI--ELPDA--KDPKIKLEPTSLSFKAKGGG-----GG---------------------------- 43 (108)
T ss_pred CceeeeECCCEEEEEE--EeCCC--CCcEEEEECCEEEEEEEcCC-----CC----------------------------
Confidence 6899999999999887 99998 88999999999999884210 10
Q ss_pred ccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecC-CCC
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQR-AFD 132 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~e-pe~ 132 (384)
..|...+.|...|+++..+.++.+ +.|.|+|.|.. +..
T Consensus 44 --~~y~~~~~L~~~I~pe~s~~~v~~-~kveI~L~K~~~~~~ 82 (108)
T cd06465 44 --KKYEFDLEFYKEIDPEESKYKVTG-RQIEFVLRKKEAGEY 82 (108)
T ss_pred --eeEEEEeEhhhhccccccEEEecC-CeEEEEEEECCCCCC
Confidence 047778899999999999999999 99999999987 443
No 50
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.36 E-value=0.0013 Score=51.86 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=65.6
Q ss_pred eEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccc
Q 016705 15 AIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDG 94 (384)
Q Consensus 15 DV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~G 94 (384)
|++++++...|++ .++|+.+++++|+++++.|.+++... .+ .
T Consensus 1 dW~Q~~~~V~iti--~~k~~~~~~~~v~~~~~~l~~~~~~~------~~------------------------------~ 42 (84)
T cd06489 1 DWYQTESQVVITI--LIKNVKPEDVSVEFEKRELSATVKLP------SG------------------------------N 42 (84)
T ss_pred CccccCCEEEEEE--EECCCCHHHCEEEEeCCEEEEEEECC------CC------------------------------C
Confidence 6889999988877 89999999999999999999987531 11 0
Q ss_pred eEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 95 KIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
.|.-.+.|...|++++.+.+... +-+.|+|.|..+.
T Consensus 43 ~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~~ 78 (84)
T cd06489 43 DYSLKLHLLHPIVPEQSSYKILS-TKIEIKLKKTEAI 78 (84)
T ss_pred cEEEeeecCceecchhcEEEEeC-cEEEEEEEcCCCC
Confidence 36677899999999999999998 8999999998654
No 51
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.26 E-value=0.0019 Score=61.66 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=56.0
Q ss_pred CCeEEEEEeccCCCC-CCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecccceEEE
Q 016705 20 DERSVHFKVFLASGM-KQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKIEM 98 (384)
Q Consensus 20 DDeyII~A~FDLPGV-kKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs~GsFsR 98 (384)
.+.++|++ +|||+ +-.+|.|+|.++.|.|..... .|.-
T Consensus 260 p~~lvv~i--~LP~~~s~~~i~LdV~~~~l~l~~~~~---------------------------------------~y~L 298 (328)
T PF08190_consen 260 PEELVVEI--ELPGVESASDIDLDVSEDRLSLSSPKP---------------------------------------KYRL 298 (328)
T ss_pred CceEEEEE--ECCCcCccceeEEEEeCCEEEEEeCCC---------------------------------------ceEE
Confidence 45677766 99999 789999999999999975320 3677
Q ss_pred EEECCCCcccCcceEEeecC-cEEEEEEe
Q 016705 99 NFSLPVGVDPDGFSTSMDDA-GVLTLTFK 126 (384)
Q Consensus 99 sI~LPe~VD~dkIkAsLeNd-GVLTITLP 126 (384)
.+.||..||.+..+|.|... ++|+||||
T Consensus 299 ~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 299 DLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred EccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 89999999999999999765 99999998
No 52
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.00 E-value=0.0087 Score=48.18 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=67.8
Q ss_pred eeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecc
Q 016705 13 VSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPN 92 (384)
Q Consensus 13 ~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs 92 (384)
++|++++++...|.+ -+.|+.++++++.++++.|+|+..-.. +.
T Consensus 2 R~dW~Qs~~~V~ItI--~~k~~~~~~~~v~~~~~~l~v~~~~~~------~~---------------------------- 45 (87)
T cd06488 2 RHDWHQTGSHVVVSV--YAKNSNPELSVVEANSTVLTIHIVFEG------NK---------------------------- 45 (87)
T ss_pred CccEeeCCCEEEEEE--EECcCCccceEEEecCCEEEEEEECCC------Cc----------------------------
Confidence 589999999999988 889999999999999999988753210 10
Q ss_pred cceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 93 DGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 93 ~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
.|...+.|-..|++++.+-.... .-+.|++.|..+.
T Consensus 46 --~y~~~l~L~~~I~~~~s~~~v~~-~kvei~L~K~~~~ 81 (87)
T cd06488 46 --EFQLDIELWGVIDVEKSSVNMLP-TKVEIKLRKAEPG 81 (87)
T ss_pred --eEEEEeeccceEChhHcEEEecC-cEEEEEEEeCCCC
Confidence 47888899999999999999998 9999999998764
No 53
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.87 E-value=0.013 Score=46.77 Aligned_cols=80 Identities=13% Similarity=0.203 Sum_probs=65.5
Q ss_pred eeeEEEeCCeEEEEEeccCCCCCC---CCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEe
Q 016705 13 VSAIWEEDERSVHFKVFLASGMKQ---EDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLN 89 (384)
Q Consensus 13 ~VDV~ETDDeyII~A~FDLPGVkK---EDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~r 89 (384)
.++++++++...|.+ .+|+..+ ++++|+++.+.|.|++.- . ++.
T Consensus 3 ~y~W~Qt~~~V~i~i--~~~~~~~~~~~~v~v~~~~~~l~v~~~~----~--~~~------------------------- 49 (92)
T cd06468 3 KYAWDQSDKFVKIYI--TLKGVHQLPKENIQVEFTERSFELKVHD----L--NGK------------------------- 49 (92)
T ss_pred eeeeecCCCEEEEEE--EccCCCcCCcccEEEEecCCEEEEEEEC----C--CCc-------------------------
Confidence 478999999999888 9999876 999999999999998731 0 110
Q ss_pred ecccceEEEEEE-CCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 90 RPNDGKIEMNFS-LPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 90 ERs~GsFsRsI~-LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
.|.-.+. |-..|++++.+..+.. +-+.|+|.|..+.
T Consensus 50 -----~~~~~~~~L~~~I~~e~s~~~~~~-~ki~i~L~K~~~~ 86 (92)
T cd06468 50 -----NYRFTINRLLKKIDPEKSSFKVKT-DRIVITLAKKKEK 86 (92)
T ss_pred -----EEEEEehHhhCccCccccEEEEeC-CEEEEEEEeCCCC
Confidence 3445554 8899999999999999 9999999999864
No 54
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.40 E-value=0.037 Score=43.16 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=58.3
Q ss_pred eeEEEeCCeEEEEEeccCC-CCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecc
Q 016705 14 SAIWEEDERSVHFKVFLAS-GMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPN 92 (384)
Q Consensus 14 VDV~ETDDeyII~A~FDLP-GVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs 92 (384)
+++++++++..|++ .+| ++.++|+++++.++.|.|+... .
T Consensus 1 y~W~Qt~~~V~i~i--~~~~~~~~~dv~v~~~~~~l~v~~~~--------~----------------------------- 41 (85)
T cd06467 1 YSWTQTLDEVTVTI--PLPEGTKSKDVKVEITPKHLKVGVKG--------G----------------------------- 41 (85)
T ss_pred CEEEeeCCEEEEEE--ECCCCCcceeEEEEEEcCEEEEEECC--------C-----------------------------
Confidence 46789999988876 997 7999999999999999998631 0
Q ss_pred cceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCC
Q 016705 93 DGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRA 130 (384)
Q Consensus 93 ~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~ep 130 (384)
.+.-.-.|...|+++...-++.+...|.|+|+|..+
T Consensus 42 --~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 42 --EPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred --CceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 011123578889999877777653679999999876
No 55
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.29 E-value=0.069 Score=42.62 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=59.6
Q ss_pred eeEEEeCCeEEEEEeccCC-CCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecc
Q 016705 14 SAIWEEDERSVHFKVFLAS-GMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPN 92 (384)
Q Consensus 14 VDV~ETDDeyII~A~FDLP-GVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs 92 (384)
++++++.+...|.+ .+| |+.++|++|+++.+.|.|... . ..
T Consensus 1 Y~W~Qt~~~V~v~i--~~p~~~~~~dv~v~~~~~~l~v~~~-----~--~~----------------------------- 42 (85)
T cd06493 1 YYWQQTEEDLTLTI--RLPEDTTKEDIRIKFLPDHISIALK-----D--QA----------------------------- 42 (85)
T ss_pred CccEEeCCEEEEEE--ECCCCCChhhEEEEEecCEEEEEeC-----C--CC-----------------------------
Confidence 47889999999877 996 999999999999999998641 0 00
Q ss_pred cceEEEEEECCCCcccCcceEEeecCc-EEEEEEeecCCC
Q 016705 93 DGKIEMNFSLPVGVDPDGFSTSMDDAG-VLTLTFKRQRAF 131 (384)
Q Consensus 93 ~GsFsRsI~LPe~VD~dkIkAsLeNdG-VLTITLPK~epe 131 (384)
.+ ..-.|...|+++..+=++++ | .|.|+|.|..+.
T Consensus 43 --~~-~~g~L~~~I~~d~Stw~i~~-~~~l~i~L~K~~~~ 78 (85)
T cd06493 43 --PL-LEGKLYSSIDHESSTWIIKE-NKSLEVSLIKKDEG 78 (85)
T ss_pred --eE-EeCcccCcccccCcEEEEeC-CCEEEEEEEECCCC
Confidence 11 23378889999997777777 6 799999998754
No 56
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.88 E-value=0.097 Score=43.58 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=64.3
Q ss_pred CCCCCeeeEEEeCCeEEEEEeccCC-CCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCce
Q 016705 8 KKPDPVSAIWEEDERSVHFKVFLAS-GMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTS 86 (384)
Q Consensus 8 ~~~~P~VDV~ETDDeyII~A~FDLP-GVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~ 86 (384)
++..+.++++++.++..|++ .+| |+++.|++|.+..+.|.|.-. +
T Consensus 2 ~~~~~~y~W~QT~~eV~v~i--~lp~~~~~kdv~V~i~~~~l~V~~~---------g----------------------- 47 (93)
T cd06494 2 PCKTPWGCWYQTMDEVFIEV--NVPPGTRAKDVKCKLGSRDISLAVK---------G----------------------- 47 (93)
T ss_pred CccCCCcEEEeEcCEEEEEE--ECCCCCceeeEEEEEEcCEEEEEEC---------C-----------------------
Confidence 35577899999999999877 888 999999999999999998741 0
Q ss_pred EEeecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 87 SLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 87 ~~rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
++.-.| .|+..|+++...=+++++.+|.|+|.|....
T Consensus 48 --~~~l~G------~L~~~I~~destWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 48 --QEVLKG------KLFDSVVADECTWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred --EEEEcC------cccCccCcccCEEEEECCcEEEEEEEeCCCC
Confidence 011112 5778899999888999834589999998644
No 57
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=95.76 E-value=0.16 Score=43.14 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=62.8
Q ss_pred CeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 12 PVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 12 P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
|.++++++.+...|++ ++|+ .+|++|+++++.|+++|.. . ++.
T Consensus 2 p~v~WaQr~~~V~ltI--~v~d--~~d~~v~l~~~~l~f~~~~---~---~g~--------------------------- 44 (106)
T cd00237 2 AKTLWYDRRDYVFIEF--CVED--SKDVKVDFEKSKLTFSCLN---G---DNV--------------------------- 44 (106)
T ss_pred CcceeeECCCEEEEEE--EeCC--CCCcEEEEecCEEEEEEEC---C---CCc---------------------------
Confidence 7899999999888877 9999 5899999999999998832 1 110
Q ss_pred ccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
.|.-.+.|-..|++++.+-+... --+.|.|.|....
T Consensus 45 ---~y~~~l~l~~~I~pe~Sk~~v~~-r~ve~~L~K~~~~ 80 (106)
T cd00237 45 ---KIYNEIELYDRVDPNDSKHKRTD-RSILCCLRKGKEG 80 (106)
T ss_pred ---EEEEEEEeecccCcccCeEEeCC-ceEEEEEEeCCCC
Confidence 35567788889999988888777 7788889998643
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.61 E-value=0.078 Score=52.54 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=68.5
Q ss_pred CCCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEe
Q 016705 10 PDPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLN 89 (384)
Q Consensus 10 ~~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~r 89 (384)
..++.|+|++++.+.|.+ -+.|+.+++++|++.++.|.|+-... ...
T Consensus 155 ~~~r~dWyQs~~~V~i~i--~~k~~~~~~~~v~~~~~~l~v~~~~~-----~~~-------------------------- 201 (356)
T PLN03088 155 PKYRHEFYQKPEEVVVTV--FAKGVPAENVNVDFGEQILSVVIEVP-----GED-------------------------- 201 (356)
T ss_pred CccccceeecCCEEEEEE--EecCCChHHcEEEeecCEEEEEEecC-----CCc--------------------------
Confidence 347899999999999887 99999999999999999999886321 000
Q ss_pred ecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCC
Q 016705 90 RPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAF 131 (384)
Q Consensus 90 ERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe 131 (384)
.|...+.|-..|++++.+-+... --+.|+|.|..+.
T Consensus 202 -----~y~~~~~L~~~I~p~~s~~~v~~-~Kiei~l~K~~~~ 237 (356)
T PLN03088 202 -----AYHLQPRLFGKIIPDKCKYEVLS-TKIEIRLAKAEPI 237 (356)
T ss_pred -----ceeecccccccccccccEEEEec-ceEEEEEecCCCC
Confidence 36666899999999999999998 7899999887654
No 59
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=95.52 E-value=0.095 Score=40.19 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=51.1
Q ss_pred ceEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 149 g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
..+.+.+.+. +.+.+|+.|.++++.+.|+| + ++.+++.+|+.|||=..++++.+ +.|.+++
T Consensus 6 ~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~-------------~----~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L 66 (78)
T cd06469 6 EDVKISVPLK-GVKTSKVDIFCSDLYLKVNF-------------P----PYLFELDLAAPIDDEKSSAKIGN-GVLVFTL 66 (78)
T ss_pred CEEEEEEEeC-CCccccceEEEecCEEEEcC-------------C----CEEEEEeCcccccccccEEEEeC-CEEEEEE
Confidence 3467777765 68999999999999988877 1 23578899999999999999755 7788887
Q ss_pred hhh
Q 016705 229 KRL 231 (384)
Q Consensus 229 ~~~ 231 (384)
...
T Consensus 67 ~K~ 69 (78)
T cd06469 67 VKK 69 (78)
T ss_pred EeC
Confidence 653
No 60
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=94.92 E-value=0.076 Score=50.28 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=64.6
Q ss_pred CCCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEe
Q 016705 10 PDPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLN 89 (384)
Q Consensus 10 ~~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~r 89 (384)
..++.|+|++....+|++ -.+++.++|+.|++.++.|.|.-+-. . ++
T Consensus 2 ~k~r~DwyQt~~~vvIti--~~k~v~~~~v~v~~s~~~l~~~~~~~---~---g~------------------------- 48 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITI--FAKNVPKEDVNVEISENTLSIVIQLP---S---GS------------------------- 48 (196)
T ss_pred CcccceeecCCceEEEEE--EecCCCccceeEEeecceEEEEEecC---C---ch-------------------------
Confidence 468899999999999988 99999999999999999998875432 1 00
Q ss_pred ecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCCc
Q 016705 90 RPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDL 133 (384)
Q Consensus 90 ERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~~ 133 (384)
.|.-...|-..|.+++.+-..-. --+.|+|+|....+.
T Consensus 49 -----~~~l~~~L~~~I~pe~~s~k~~s-tKVEI~L~K~~~irW 86 (196)
T KOG1309|consen 49 -----EYNLQLKLYHEIIPEKSSFKVFS-TKVEITLAKAEIIRW 86 (196)
T ss_pred -----hhhhhHHhcccccccceeeEeee-eeEEEEeccccchhh
Confidence 24444556678888887666665 668899999654443
No 61
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.036 Score=51.46 Aligned_cols=76 Identities=37% Similarity=0.526 Sum_probs=58.8
Q ss_pred cccCCccceEEEEeCCe-EEEEeeeeeeeccCCcceeeec------cccceEeeCCCccCcceeeEEEecceeEEEEehh
Q 016705 158 AAGTKIEDLVVVIERGK-YLIVGMLQKKEQEGDTSVKQYH------GNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKR 230 (384)
Q Consensus 158 ~~~~k~edl~v~v~~~~-~~v~g~~~k~~~~~~~~~k~~h------~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~~ 230 (384)
=|+.+.||+.|-++.++ ++|+|..++.+.+. .+-+.|| +.|.|.+.+|+-+|-=.+.|.| .||||+++...
T Consensus 102 ~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~-~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~-~nGVL~VvvpK 179 (196)
T KOG0710|consen 102 LPGLKKEDIKVEVEDEKVLTISGERKKEEEES-GSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEM-ENGVLTVVVPK 179 (196)
T ss_pred CCCCCchhceEEeccCcEEEEecccccccccc-cCCccceeehhcccceEeeecCCccccHHHHHHHh-hCCeEEEEEec
Confidence 37889999999999997 99999876654432 1222233 6788999999999887787776 47999999988
Q ss_pred hcccc
Q 016705 231 LMPFL 235 (384)
Q Consensus 231 ~~~~~ 235 (384)
+-|.+
T Consensus 180 ~~~~~ 184 (196)
T KOG0710|consen 180 LEPLL 184 (196)
T ss_pred ccccc
Confidence 87754
No 62
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=93.39 E-value=1.1 Score=36.43 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=57.1
Q ss_pred eeEEEeCCeEEEEEeccCC--CCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeec
Q 016705 14 SAIWEEDERSVHFKVFLAS--GMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91 (384)
Q Consensus 14 VDV~ETDDeyII~A~FDLP--GVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rER 91 (384)
.|+|++++...|.+ -.. +..++++.+..+.+.|.|+-.-. ..
T Consensus 1 ~DWyQt~~~Vtiti--y~K~~~~~~~~v~v~~~~~~l~v~~~~~------~~---------------------------- 44 (87)
T cd06490 1 YDWFQTDSEVTIVV--YTKSKGNPADIVIVDDQQRELRVEIILG------DK---------------------------- 44 (87)
T ss_pred CCceECCCEEEEEE--EEcccCCCCccEEEECCCCEEEEEEECC------Cc----------------------------
Confidence 48999999999987 666 45566666776777888865321 10
Q ss_pred ccceEEEEEECCCCcccCcceEEee--cCcEEEEEEeecCCCC
Q 016705 92 NDGKIEMNFSLPVGVDPDGFSTSMD--DAGVLTLTFKRQRAFD 132 (384)
Q Consensus 92 s~GsFsRsI~LPe~VD~dkIkAsLe--NdGVLTITLPK~epe~ 132 (384)
.|...+.|=..|+++. +.++. - |-+.|++.|.++.+
T Consensus 45 ---~~~~~~~L~~~I~~~~-~~~~~~~~-~KVEI~L~K~e~~~ 82 (87)
T cd06490 45 ---SYLLHLDLSNEVQWPC-EVRISTET-GKIELVLKKKEPEK 82 (87)
T ss_pred ---eEEEeeeccccCCCCc-EEEEcccC-ceEEEEEEcCCCCc
Confidence 4777788888888774 55555 6 78999999987653
No 63
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=92.00 E-value=1.1 Score=33.58 Aligned_cols=69 Identities=14% Similarity=0.015 Sum_probs=52.8
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
.+.+.+++.... .+|+.|.++.+.+.|+.... .. .++..++.+++.|||=..++++.+ +.|.+++.
T Consensus 7 ~v~i~v~~~~~~-~~~~~v~~~~~~l~i~~~~~--------~~----~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~ 72 (84)
T cd06463 7 EVTITIPLKDVT-KKDVKVEFTPKSLTVSVKGG--------GG----KEYLLEGELFGPIDPEESKWTVED-RKIEITLK 72 (84)
T ss_pred EEEEEEEcCCCC-ccceEEEEecCEEEEEeeCC--------CC----CceEEeeEccCccchhhcEEEEeC-CEEEEEEE
Confidence 377778877655 99999999999999988521 11 234567889999999989999865 78888876
Q ss_pred hhc
Q 016705 230 RLM 232 (384)
Q Consensus 230 ~~~ 232 (384)
+.-
T Consensus 73 K~~ 75 (84)
T cd06463 73 KKE 75 (84)
T ss_pred ECC
Confidence 643
No 64
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=81.36 E-value=11 Score=30.78 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=53.8
Q ss_pred EEEeCCeEEEEEeccCC-C--CCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEeecc
Q 016705 16 IWEEDERSVHFKVFLAS-G--MKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPN 92 (384)
Q Consensus 16 V~ETDDeyII~A~FDLP-G--VkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rERs 92 (384)
+.++.++..+++ .+| + +++.|++|.+..+.|.|.-+- .+ ..
T Consensus 3 W~QT~~ev~v~v--~l~~~~~~~~kdv~v~i~~~~l~v~~~g------~~-----------------------~~----- 46 (87)
T cd06492 3 WTQTLSEVELKV--PFKVSFRLKGKDVVVDIQRKHLKVGLKG------QP-----------------------PI----- 46 (87)
T ss_pred cEeecCEEEEEE--ECCCCCCccceEEEEEEecCEEEEEECC------Cc-----------------------eE-----
Confidence 456777877776 775 3 889999999999999985411 00 00
Q ss_pred cceEEEEEECCCCcccCcceEEeecCc-EEEEEEeecCCC
Q 016705 93 DGKIEMNFSLPVGVDPDGFSTSMDDAG-VLTLTFKRQRAF 131 (384)
Q Consensus 93 ~GsFsRsI~LPe~VD~dkIkAsLeNdG-VLTITLPK~epe 131 (384)
+ .=.|...|+++...=++++ | .|.|+|-|..+.
T Consensus 47 ---i--~G~L~~~V~~des~Wtled-~~~l~i~L~K~~~~ 80 (87)
T cd06492 47 ---I--DGELYNEVKVEESSWLIED-GKVVTVNLEKINKM 80 (87)
T ss_pred ---E--eCcccCcccccccEEEEeC-CCEEEEEEEECCCC
Confidence 1 1156778898888888888 6 899999998653
No 65
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=75.85 E-value=30 Score=25.68 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=46.5
Q ss_pred ceEEEEEeeccc-CCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEE
Q 016705 149 GFVDFKAYLAAG-TKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLT 227 (384)
Q Consensus 149 g~~~~~~~~~~~-~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~ 227 (384)
..|.|.+++.|. .+++|+.|.++++.+.|+.. ..++ .. | .-...+.+.|||=.-+..+.++ -+.++
T Consensus 10 ~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~----~~~~--~~--~----~~~~~L~~~I~~~~s~~~~~~~-~i~i~ 76 (79)
T PF04969_consen 10 DEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIK----SGDG--KE--Y----LLEGELFGEIDPDESTWKVKDN-KIEIT 76 (79)
T ss_dssp SEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEE----ETTS--CE--E----EEEEEBSS-BECCCEEEEEETT-EEEEE
T ss_pred CEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEE----ccCC--ce--E----EEEEEEeeeEcchhcEEEEECC-EEEEE
Confidence 358888999554 89999999999999999964 1111 11 2 2355688899998888888877 55554
Q ss_pred e
Q 016705 228 F 228 (384)
Q Consensus 228 ~ 228 (384)
.
T Consensus 77 L 77 (79)
T PF04969_consen 77 L 77 (79)
T ss_dssp E
T ss_pred E
Confidence 4
No 66
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=75.66 E-value=23 Score=28.25 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=46.4
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
.|.|.+++.++.+.+|++|.++++++.|+.. +.... . .-.+...|||=.-+=.+.++..|.++++
T Consensus 9 ~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~-------~~~~~--~------~g~L~~~I~~d~Stw~i~~~~~l~i~L~ 73 (85)
T cd06493 9 DLTLTIRLPEDTTKEDIRIKFLPDHISIALK-------DQAPL--L------EGKLYSSIDHESSTWIIKENKSLEVSLI 73 (85)
T ss_pred EEEEEEECCCCCChhhEEEEEecCEEEEEeC-------CCCeE--E------eCcccCcccccCcEEEEeCCCEEEEEEE
Confidence 3778899999999999999999999998642 11111 1 2256677888766667777766666654
Q ss_pred h
Q 016705 230 R 230 (384)
Q Consensus 230 ~ 230 (384)
.
T Consensus 74 K 74 (85)
T cd06493 74 K 74 (85)
T ss_pred E
Confidence 3
No 67
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=74.86 E-value=18 Score=27.81 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=49.7
Q ss_pred ceEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 149 GFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 149 g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
..+.+.+++ |+...+|+.|.++.+.+.|...+. ..+.| .-.+.+++.|||=..+..+.+ +.+.+++
T Consensus 7 ~~v~i~v~~-~~~~~~~v~v~~~~~~l~i~~~~~--------~~~~~----~~~~~L~~~I~~~~s~~~~~~-~~vei~L 72 (84)
T cd06466 7 TSVTVTIYA-KNVDKEDVKVEFNEQSLSVSIILP--------GGSEY----QLELDLFGPIDPEQSKVSVLP-TKVEITL 72 (84)
T ss_pred CEEEEEEEE-CCCCHHHCEEEEecCEEEEEEECC--------CCCeE----EEecccccccCchhcEEEEeC-eEEEEEE
Confidence 347777774 478899999999999999987521 11113 236689999999987777655 4577777
Q ss_pred hhh
Q 016705 229 KRL 231 (384)
Q Consensus 229 ~~~ 231 (384)
+..
T Consensus 73 ~K~ 75 (84)
T cd06466 73 KKA 75 (84)
T ss_pred EcC
Confidence 664
No 68
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=73.79 E-value=36 Score=29.02 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=58.6
Q ss_pred CCeeeEEEeCCeEEEEEeccCC-CC-CCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEE
Q 016705 11 DPVSAIWEEDERSVHFKVFLAS-GM-KQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSL 88 (384)
Q Consensus 11 ~P~VDV~ETDDeyII~A~FDLP-GV-kKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~ 88 (384)
...+-+.+|.++..|.+ .+| |. +..||+|++..+.|.|.-... . . +. ..
T Consensus 4 ~e~Y~WtQTl~eV~V~i--~lp~~~~~~kdv~v~i~~~~l~v~~~~~-~-~--~~----------------------~~- 54 (102)
T cd06495 4 RENYTWSQDYTDVEVRV--PVPKDVVKGRQVSVDLQSSSIRVSVRDG-G-G--EK----------------------VL- 54 (102)
T ss_pred CCceEEEeECCeEEEEE--ECCCCCccceEEEEEEEcCEEEEEEecC-C-C--Cc----------------------eE-
Confidence 45688899999999877 999 64 678999999999998875310 0 0 00 00
Q ss_pred eecccceEEEEEECCCCcccCcceEEeecCcE-EEEEEeecC
Q 016705 89 NRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGV-LTLTFKRQR 129 (384)
Q Consensus 89 rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGV-LTITLPK~e 129 (384)
-.| .|+..|+++.-.=++++ |- |.|+|-|..
T Consensus 55 ---i~G------~L~~~V~~des~Wtled-~~~l~I~L~K~~ 86 (102)
T cd06495 55 ---MEG------EFTHKINTENSLWSLEP-GKCVLLSLSKCS 86 (102)
T ss_pred ---EeC------cccCcccCccceEEEeC-CCEEEEEEEECC
Confidence 012 57778899888888988 65 899999985
No 69
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=68.64 E-value=64 Score=29.85 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=16.8
Q ss_pred CCCeEEEEECCEEEEEEEE
Q 016705 36 QEDVKIVIQDGKLVIMTEA 54 (384)
Q Consensus 36 KEDIsIeVdddvLtISGER 54 (384)
|++|+|+++++.++|+|.+
T Consensus 7 P~~V~v~i~~~~i~vkGp~ 25 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPK 25 (170)
T ss_pred CCCCEEEEeCCEEEEECCC
Confidence 7899999999999999843
No 70
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=66.02 E-value=40 Score=27.50 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=42.9
Q ss_pred EEEEEeeccc--CCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEe
Q 016705 151 VDFKAYLAAG--TKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228 (384)
Q Consensus 151 ~~~~~~~~~~--~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~ 228 (384)
+.+.++|.++ ++..|++|.+.++.+-|.=+ +.... .++ .+...|||=.-.=.++|+..|.++.
T Consensus 10 v~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~-------g~~~~--i~G------~L~~~V~~des~Wtled~~~l~i~L 74 (87)
T cd06492 10 VELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK-------GQPPI--IDG------ELYNEVKVEESSWLIEDGKVVTVNL 74 (87)
T ss_pred EEEEEECCCCCCccceEEEEEEecCEEEEEEC-------CCceE--EeC------cccCcccccccEEEEeCCCEEEEEE
Confidence 6777888776 78999999999998887332 21111 223 3456678855555577877776665
Q ss_pred hh
Q 016705 229 KR 230 (384)
Q Consensus 229 ~~ 230 (384)
..
T Consensus 75 ~K 76 (87)
T cd06492 75 EK 76 (87)
T ss_pred EE
Confidence 43
No 71
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=65.45 E-value=35 Score=31.42 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=26.5
Q ss_pred ccceEEEEeCC-eEEEEeeeeeeeccCCcceeeeccccceEeeCCCc
Q 016705 163 IEDLVVVIERG-KYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDG 208 (384)
Q Consensus 163 ~edl~v~v~~~-~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~ 208 (384)
|+++.|.+..+ +++++|. .| ..+-|+ +..-|++.-||-
T Consensus 117 p~~v~v~~~~~t~I~i~G~-dk------e~Vgq~-AA~Ir~~r~pep 155 (175)
T TIGR03654 117 PEGITVEVPKPTEIVVKGI-DK------QLVGQV-AAEIRAFRKPEP 155 (175)
T ss_pred CCCeEEEeCCCCEEEEEEC-CH------HHHHHH-HHHHhccCCCCC
Confidence 68889999876 7999996 22 233334 556688888864
No 72
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=63.73 E-value=59 Score=26.88 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=46.4
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
.|.|.+++... +|+.|.+..+++.|++.. ..+.+.| .-...+...|||=.-+..+.+ +-+.++++
T Consensus 11 ~V~i~i~~~~~---~~~~V~~~~~~l~v~~~~-------~~~~~~y----~~~~~L~~~I~pe~s~~~v~~-~kveI~L~ 75 (108)
T cd06465 11 VVYLTIELPDA---KDPKIKLEPTSLSFKAKG-------GGGGKKY----EFDLEFYKEIDPEESKYKVTG-RQIEFVLR 75 (108)
T ss_pred EEEEEEEeCCC---CCcEEEEECCEEEEEEEc-------CCCCeeE----EEEeEhhhhccccccEEEecC-CeEEEEEE
Confidence 46666777654 999999999999999841 1122223 235589999999988888877 54555554
Q ss_pred h
Q 016705 230 R 230 (384)
Q Consensus 230 ~ 230 (384)
.
T Consensus 76 K 76 (108)
T cd06465 76 K 76 (108)
T ss_pred E
Confidence 4
No 73
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=63.63 E-value=25 Score=32.47 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=26.9
Q ss_pred ccceEEEEeCC-eEEEEeeeeeeeccCCcceeeeccccceEeeCCCc
Q 016705 163 IEDLVVVIERG-KYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDG 208 (384)
Q Consensus 163 ~edl~v~v~~~-~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~ 208 (384)
|+++.|.+..+ +++|+|. .| ..+-|+ +.+-|+|..||-
T Consensus 118 P~gv~v~~~~~t~I~i~G~-dk------e~Vgq~-AA~Ir~~r~pep 156 (178)
T CHL00140 118 PPGISVEVENNTNITIKGI-DK------ELVGQF-AAKIRSVRPPEP 156 (178)
T ss_pred CCCeEEEeCCCCEEEEEEC-CH------HHHHHH-HHHHhccCCCCC
Confidence 57888888876 8999996 22 234445 666688888864
No 74
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=63.16 E-value=91 Score=29.23 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.9
Q ss_pred CCCeEEEEECCEEEEEEEE
Q 016705 36 QEDVKIVIQDGKLVIMTEA 54 (384)
Q Consensus 36 KEDIsIeVdddvLtISGER 54 (384)
|++++|+++++.++|+|.+
T Consensus 13 P~~V~v~i~~~~v~VkGp~ 31 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPK 31 (180)
T ss_pred CCCCEEEEECCEEEEECCC
Confidence 7899999999999999843
No 75
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=59.48 E-value=55 Score=27.98 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=46.2
Q ss_pred cceEEeecCcEEEEEEeecCCCCcceEEeccccccCCCCceEEEEEeecccCCccceEEEEeCCeEEEEee
Q 016705 110 GFSTSMDDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGM 180 (384)
Q Consensus 110 kIkAsLeNdGVLTITLPK~epe~~RrIaIg~~~~~~~~~g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~ 180 (384)
.++++.++ |.|+|+.+....-...-+. .... .....+.++|.-.++.++|.+...+|.+-+.+.
T Consensus 86 ~~~~~~~~-~~L~I~~~~~~~~~~~~~~-----~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~~i 149 (166)
T PF13349_consen 86 KPEISVEG-GTLTIKSKDRESFFFKGFN-----FNNS-DNKSKITIYLPKDYKLDKIDIKTSSGDITIEDI 149 (166)
T ss_pred EEEEEEcC-CEEEEEEecccccccceEE-----Eccc-CCCcEEEEEECCCCceeEEEEEeccccEEEEcc
Confidence 67889999 9999998832221112111 1223 455677788888899999999999999999985
No 76
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=57.89 E-value=71 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=15.6
Q ss_pred EEEEEECCCCcccCcceEEeecCcEEEEE
Q 016705 96 IEMNFSLPVGVDPDGFSTSMDDAGVLTLT 124 (384)
Q Consensus 96 FsRsI~LPe~VD~dkIkAsLeNdGVLTIT 124 (384)
-+-.|.||.....++++....+ |=++|.
T Consensus 120 ~~i~I~lP~~~~l~~i~i~~~~-G~i~i~ 147 (166)
T PF13349_consen 120 SKITIYLPKDYKLDKIDIKTSS-GDITIE 147 (166)
T ss_pred cEEEEEECCCCceeEEEEEecc-ccEEEE
Confidence 4445566666555555555555 555543
No 77
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=54.89 E-value=56 Score=25.27 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=46.2
Q ss_pred eEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCCcceEEeccccccCCCCceEEEEEeecccCCccceEEEEeC-C
Q 016705 95 KIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIER-G 173 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~~RrIaIg~~~~~~~~~g~~~~~~~~~~~~k~edl~v~v~~-~ 173 (384)
...-+|.+|..+.+++++..+++ --|+|.++. +...++-.|-..-.+|+-...+++ +
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~---------------------~~~~l~~~L~~~I~~~~s~w~~~~~~ 66 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG---------------------GEPLLDGELYAKVKVDESTWTLEDGK 66 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEc-CEEEEEECC---------------------CCceEcCcccCceeEcCCEEEEeCCC
Confidence 46677889999999999999999 677776642 112333445555566666777888 7
Q ss_pred eEEEEeeeeeee
Q 016705 174 KYLIVGMLQKKE 185 (384)
Q Consensus 174 ~~~v~g~~~k~~ 185 (384)
++.|. ++|++
T Consensus 67 ~v~i~--L~K~~ 76 (85)
T cd06467 67 LLEIT--LEKRN 76 (85)
T ss_pred EEEEE--EEECC
Confidence 77775 46654
No 78
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=54.48 E-value=65 Score=29.73 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=25.5
Q ss_pred ccceEEEEeCC-eEEEEeeeeeeeccCCcceeeeccccceEeeCCCc
Q 016705 163 IEDLVVVIERG-KYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDG 208 (384)
Q Consensus 163 ~edl~v~v~~~-~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~ 208 (384)
|+++.|.+..+ +++++|. .| ..+.|+ +..-|+|.-||-
T Consensus 118 p~gv~v~~~~~t~I~i~G~-dk------e~Vg~~-AA~Ir~~r~pe~ 156 (178)
T PRK05498 118 PEGITVEVPKPTEIVVKGI-DK------QLVGQV-AAEIRSYRPPEP 156 (178)
T ss_pred CCCeEEEeCCCCEEEEEEC-CH------HHHHHH-HHHHhccCCCCC
Confidence 67888888776 7999996 22 233334 556678888764
No 79
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=48.80 E-value=29 Score=29.58 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=45.1
Q ss_pred EEEEEeeccc-CCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 151 VDFKAYLAAG-TKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 151 ~~~~~~~~~~-~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
++|+++|.++ .|..|+.|.+.++++-|.=+- ..+.... ..+ .++..|+|=.-.=.|+|+..|.++.-
T Consensus 16 V~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~----~~~~~~~--i~G------~L~~~V~~des~Wtled~~~l~I~L~ 83 (102)
T cd06495 16 VEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRD----GGGEKVL--MEG------EFTHKINTENSLWSLEPGKCVLLSLS 83 (102)
T ss_pred EEEEEECCCCCccceEEEEEEEcCEEEEEEec----CCCCceE--EeC------cccCcccCccceEEEeCCCEEEEEEE
Confidence 8899999998 689999999999999876531 0011111 212 46677888444444888776666654
Q ss_pred h
Q 016705 230 R 230 (384)
Q Consensus 230 ~ 230 (384)
.
T Consensus 84 K 84 (102)
T cd06495 84 K 84 (102)
T ss_pred E
Confidence 3
No 80
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=46.95 E-value=11 Score=38.44 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=62.6
Q ss_pred CCCCCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceE
Q 016705 8 KKPDPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSS 87 (384)
Q Consensus 8 ~~~~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~ 87 (384)
+.++-++|+.+|....+|.+ --|-+..++|++-+++|+|.|+-+-...
T Consensus 173 ~~~~i~yd~s~Ts~t~~ifi--y~~pv~deqVs~~~e~NTL~I~~q~~~~------------------------------ 220 (368)
T COG5091 173 PKMEIAYDFSETSDTAIIFI--YRPPVGDEQVSPVLEGNTLSISYQPRRL------------------------------ 220 (368)
T ss_pred ccceeeeeccccceeEEEEE--ecCCCCccccceeecCCcceeeeecccc------------------------------
Confidence 34556688888988888877 8889999999999999999998643211
Q ss_pred EeecccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCC
Q 016705 88 LNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFD 132 (384)
Q Consensus 88 ~rERs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~ 132 (384)
.-.|.-.++|-..|+|+..+-..-. -++.|++-|...-+
T Consensus 221 -----~~~~~~~~~Ly~ev~P~~~s~k~fs-K~~e~~l~KV~~v~ 259 (368)
T COG5091 221 -----RLWNDITISLYKEVYPDIRSIKSFS-KRVEVHLRKVEMVR 259 (368)
T ss_pred -----chHHHhhhhhhhhcCcchhhhhhcc-hhheehhhhhhhhh
Confidence 1135556777788888876666666 66777776665443
No 81
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=44.90 E-value=1.4e+02 Score=23.39 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=44.2
Q ss_pred eEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecceeEEEEeh
Q 016705 150 FVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFK 229 (384)
Q Consensus 150 ~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~~~~~~~~~ 229 (384)
.+.+.++ .++.+.+|+.|.++.+.+.+++.+. +.+.| --.+.+.+.|+|=..+..+-++. +.++++
T Consensus 8 ~V~iti~-~k~~~~~~~~v~~~~~~l~~~~~~~--------~~~~y----~~~~~L~~~I~p~~s~~~v~~~k-iei~L~ 73 (84)
T cd06489 8 QVVITIL-IKNVKPEDVSVEFEKRELSATVKLP--------SGNDY----SLKLHLLHPIVPEQSSYKILSTK-IEIKLK 73 (84)
T ss_pred EEEEEEE-ECCCCHHHCEEEEeCCEEEEEEECC--------CCCcE----EEeeecCceecchhcEEEEeCcE-EEEEEE
Confidence 4666676 4467789999999999999988631 11112 12457778888886666766665 445544
Q ss_pred h
Q 016705 230 R 230 (384)
Q Consensus 230 ~ 230 (384)
.
T Consensus 74 K 74 (84)
T cd06489 74 K 74 (84)
T ss_pred c
Confidence 3
No 82
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=42.71 E-value=47 Score=24.51 Aligned_cols=25 Identities=8% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCCCCCCCeEEEEECCEEEEEEEEe
Q 016705 31 ASGMKQEDVKIVIQDGKLVIMTEAT 55 (384)
Q Consensus 31 LPGVkKEDIsIeVdddvLtISGERk 55 (384)
-|+++..+|+|.+.++.++++|...
T Consensus 11 ~~~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 11 DPWLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp --CTT-TTEEEEEECTEEEEEEEES
T ss_pred ccccCCCeEEEEEECCEEEEEeeCc
Confidence 3567778999999999999999875
No 83
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=42.46 E-value=52 Score=27.44 Aligned_cols=52 Identities=29% Similarity=0.437 Sum_probs=36.4
Q ss_pred hhccccceeeEEEeeCceeEEEEeeeeccccCCccccc-----cccCceeeeecCCCcc
Q 016705 270 LAAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSLKQ-----YEGNNFRSFLLPDGLG 323 (384)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 323 (384)
|..|+.++-.++++|+ |+.+-|-+-.+...+..... -.|||-|.+.|||.+-
T Consensus 18 LKng~~~~G~L~~vD~--~MNl~L~~a~~~~~~~~~~~~~~v~IRG~nI~yi~lPd~l~ 74 (90)
T cd01724 18 LKNGTIVHGTITGVDP--SMNTHLKNVKLTLKGRNPVPLDTLSIRGNNIRYFILPDSLN 74 (90)
T ss_pred ECCCCEEEEEEEEEcC--ceeEEEEEEEEEcCCCceeEcceEEEeCCEEEEEEcCCcCC
Confidence 5678899999999997 45555555555433322222 3699999999999874
No 84
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=41.57 E-value=1.6e+02 Score=28.04 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=33.1
Q ss_pred ccceEEEEeC-CeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcce
Q 016705 163 IEDLVVVIER-GKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFG 213 (384)
Q Consensus 163 ~edl~v~v~~-~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~ 213 (384)
|+++.|.+.. ..++|+|- .| ..+-|. +-+-|+|.-||.-|+=+
T Consensus 118 p~gi~v~v~~~t~I~v~Gi-dK------e~VGQ~-AA~Ir~~r~pepykgKg 161 (178)
T COG0097 118 PEGITVEVPGPTEIVVEGI-DK------ELVGQV-AANIRAARKPEPYKGKG 161 (178)
T ss_pred CCCeEEEecCCCEEEEEcC-CH------HHHhHH-HHHHHhccCCCCCCCcc
Confidence 5779999999 78999996 22 234445 66789999999988865
No 85
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=39.61 E-value=1.1e+02 Score=25.59 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=47.1
Q ss_pred eEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCCcceEEeccccccCCCCceEEEEEeecccCCccceEEEEeCCe
Q 016705 95 KIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIERGK 174 (384)
Q Consensus 95 sFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~~RrIaIg~~~~~~~~~g~~~~~~~~~~~~k~edl~v~v~~~~ 174 (384)
.-.-+|+||.++...+++..+++ .-|+|.+ +|...++=.|-.--++||-.-.++.|+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~----------------------~g~~~l~G~L~~~I~~destWtled~k 72 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGS-RDISLAV----------------------KGQEVLKGKLFDSVVADECTWTLEDRK 72 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEc-CEEEEEE----------------------CCEEEEcCcccCccCcccCEEEEECCc
Confidence 56677889999999999999999 6666665 122223345667778899999999998
Q ss_pred E-EEEeeeeeee
Q 016705 175 Y-LIVGMLQKKE 185 (384)
Q Consensus 175 ~-~v~g~~~k~~ 185 (384)
+ .|+ +.|.+
T Consensus 73 ~l~I~--L~K~~ 82 (93)
T cd06494 73 LIRIV--LTKSN 82 (93)
T ss_pred EEEEE--EEeCC
Confidence 5 443 46644
No 86
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=36.45 E-value=69 Score=25.25 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=32.9
Q ss_pred hhccccceeeEEEeeCceeEEEEeeeeccccCCccccc-----cccCceeeeecCC
Q 016705 270 LAAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSLKQ-----YEGNNFRSFLLPD 320 (384)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 320 (384)
|..|+.+.-.++++|+ |..+-|-.-++...+....+ -.|||.|-+.|||
T Consensus 17 Lk~g~~~~G~L~~~D~--~MNl~L~~~~~~~~~g~~~~~~~v~IRG~nI~~v~lPd 70 (70)
T cd01721 17 LKTGEVYRGKLIEAED--NMNCQLKDVTVTARDGRVSQLEQVYIRGSKIRFFILPD 70 (70)
T ss_pred ECCCcEEEEEEEEEcC--CceeEEEEEEEECCCCcEeEcCcEEEeCCEEEEEEeCC
Confidence 3457888888999998 66666655544322222223 3699999999997
No 87
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=36.31 E-value=1.9e+02 Score=28.87 Aligned_cols=70 Identities=21% Similarity=0.138 Sum_probs=46.7
Q ss_pred eE-EEEEECCCCcccCcceEEeecCcEEEEEEeecCCCCcceEEeccccccCCCCceEEEEEeecccCCccceEEEEeC
Q 016705 95 KI-EMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIER 172 (384)
Q Consensus 95 sF-sRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~~RrIaIg~~~~~~~~~g~~~~~~~~~~~~k~edl~v~v~~ 172 (384)
.| .+.+.||....... ++.+++ +-+.|++-. ....+++.+ ....+...+.+++.|+..-..|.|+|++-.
T Consensus 87 p~~~~~~~lp~~~~~g~-~~~~~~-~~~~i~~~~--~~~~~~l~~----~~~~~~~~l~~~~~l~~~~~~e~L~vv~P~ 157 (333)
T PF10974_consen 87 PFPGGGTRLPDSPDSGG-SARFRS-KRLRIRFER--EPGGRRLDV----DLFGKGPGLEADLELDRPPGHEPLNVVTPW 157 (333)
T ss_pred CcccccccCCCCCCCcc-eEEEeC-CCEEEEEEE--CCCeEEEEE----EccCCCCCEEEEEEEeCCCCCCCEEEEeec
Confidence 45 56677887777654 688999 899999944 345577766 223344446666777766667778777643
No 88
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=33.26 E-value=26 Score=34.30 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.9
Q ss_pred chhhhhhccccceeeEEEeeC
Q 016705 265 DFKAYLAAGTKIEDLMIGIDG 285 (384)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~ 285 (384)
.|-+|+.+|+.+ .|+||||=
T Consensus 21 tFldy~~~G~~~-nl~vaIDf 40 (254)
T cd01459 21 TFLDYRSAGLES-NLIVAIDF 40 (254)
T ss_pred CHHHHHhCCCee-eEEEEEEe
Confidence 567899999999 99999993
No 89
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=28.73 E-value=69 Score=23.64 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.4
Q ss_pred ecccCCccceEEEEeCCeEEEEeeeee
Q 016705 157 LAAGTKIEDLVVVIERGKYLIVGMLQK 183 (384)
Q Consensus 157 ~~~~~k~edl~v~v~~~~~~v~g~~~k 183 (384)
-++.++..++.|.++++.++++|....
T Consensus 10 ~~~~~~~~~i~v~v~~g~v~L~G~v~s 36 (64)
T PF04972_consen 10 ADPWLPDSNISVSVENGVVTLSGEVPS 36 (64)
T ss_dssp ---CTT-TTEEEEEECTEEEEEEEESS
T ss_pred cccccCCCeEEEEEECCEEEEEeeCcH
Confidence 345788889999999999999998644
No 90
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=25.74 E-value=1.8e+02 Score=24.87 Aligned_cols=43 Identities=28% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCCeeeEEEeCCeEEEEEeccCCC----CCCCCeEEEEECCEEEEEE
Q 016705 9 KPDPVSAIWEEDERSVHFKVFLASG----MKQEDVKIVIQDGKLVIMT 52 (384)
Q Consensus 9 ~~~P~VDV~ETDDeyII~A~FDLPG----VkKEDIsIeVdddvLtISG 52 (384)
...|+|.|+++++.|.|.+ +..-+ ..++...|+-+++.+-|.-
T Consensus 23 ~~~P~v~I~r~g~~Y~vti-~~~~~~~~~~~p~tY~i~~~~g~~fI~~ 69 (95)
T PF12992_consen 23 NGKPDVTIYRNGGSYKVTI-TYRSGYTGRAKPETYPIQEEDGNLFIET 69 (95)
T ss_pred CCCCCEEEEECCCeEEEEE-EEEcCcCCcccceEEEEEEeCCEEEEec
Confidence 3469999999999998886 22222 3567777887788887653
No 91
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=23.89 E-value=3.6e+02 Score=21.21 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=46.7
Q ss_pred EEEEEECCCCcc--cCcceEEeecCcEEEEEEeecCCCCcceEEeccccccCCCCce-EEEEE-eecccCCccceEEEEe
Q 016705 96 IEMNFSLPVGVD--PDGFSTSMDDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGF-VDFKA-YLAAGTKIEDLVVVIE 171 (384)
Q Consensus 96 FsRsI~LPe~VD--~dkIkAsLeNdGVLTITLPK~epe~~RrIaIg~~~~~~~~~g~-~~~~~-~~~~~~k~edl~v~v~ 171 (384)
-.-.|.+|.... .+++++.++. .-|.|.+. ..+|. ..+.+ +|-..-.+|+-...+.
T Consensus 13 V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~-------------------~~~~~~~~~~~~~L~~~I~~e~s~~~~~ 72 (92)
T cd06468 13 VKIYITLKGVHQLPKENIQVEFTE-RSFELKVH-------------------DLNGKNYRFTINRLLKKIDPEKSSFKVK 72 (92)
T ss_pred EEEEEEccCCCcCCcccEEEEecC-CEEEEEEE-------------------CCCCcEEEEEehHhhCccCccccEEEEe
Confidence 445666775433 4778888888 66666652 11233 44555 3888889999999999
Q ss_pred CCeEEEEeeeeeee
Q 016705 172 RGKYLIVGMLQKKE 185 (384)
Q Consensus 172 ~~~~~v~g~~~k~~ 185 (384)
++++.|. +.|++
T Consensus 73 ~~ki~i~--L~K~~ 84 (92)
T cd06468 73 TDRIVIT--LAKKK 84 (92)
T ss_pred CCEEEEE--EEeCC
Confidence 9999998 56754
No 92
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=23.85 E-value=4.9e+02 Score=25.06 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=51.7
Q ss_pred CceEEEEEeecccCCccceEEEEeCCeEEEEeeeeeeeccCCcceeeeccccceEeeCCCccCcceeeEEEecc-eeEEE
Q 016705 148 KGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDA-GVLTL 226 (384)
Q Consensus 148 ~g~~~~~~~~~~~~k~edl~v~v~~~~~~v~g~~~k~~~~~~~~~k~~h~~~~~sy~~p~~vdp~~~~~~~~d~-~~~~~ 226 (384)
-..|.|+|.|.-.....|+.+.|...++.|+-.. . .|| -...+|..||+=..+|+.+-+ ..|++
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~--------~---~y~----L~l~LP~~V~~~~~~Akf~~~~~~L~v 324 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPK--------P---KYR----LDLPLPYPVDEDNGKAKFDKKTKTLTV 324 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCC--------C---ceE----EEccCCCcccCCCceEEEccCCCEEEE
Confidence 3449999999766699999999999999998731 1 253 257899999999999997754 57777
Q ss_pred Ee
Q 016705 227 TF 228 (384)
Q Consensus 227 ~~ 228 (384)
|.
T Consensus 325 tl 326 (328)
T PF08190_consen 325 TL 326 (328)
T ss_pred EE
Confidence 74
No 93
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=21.96 E-value=92 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=19.3
Q ss_pred ecccCCccceEEEEeCCeEEEEee
Q 016705 157 LAAGTKIEDLVVVIERGKYLIVGM 180 (384)
Q Consensus 157 ~~~~~k~edl~v~v~~~~~~v~g~ 180 (384)
.+..+++.|||+.-+.+|++|.+.
T Consensus 17 as~~l~l~dl~~~~~~gkivv~~~ 40 (112)
T PF09116_consen 17 ASRTLGLPDLCFVNDDGKIVVTDF 40 (112)
T ss_dssp HHHHCT--EEEEEEETTEEEEEEE
T ss_pred HHHhcCCCeEEEEecCCEEEEEcc
Confidence 356799999999999999999993
No 94
>PF14913 DPCD: DPCD protein family
Probab=21.72 E-value=5.4e+02 Score=25.00 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=53.7
Q ss_pred CCCCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECC--EEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCce
Q 016705 9 KPDPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDG--KLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTS 86 (384)
Q Consensus 9 ~~~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVddd--vLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~ 86 (384)
...|-+==-+|...|...+ =.|| +.++--+|+++++ .++|+-. +
T Consensus 84 s~nP~~~r~dTk~~fqWRI-RNLP-YP~dvYsVtvd~~~r~ivvRTt---------N----------------------- 129 (194)
T PF14913_consen 84 SSNPIFVRRDTKTSFQWRI-RNLP-YPKDVYSVTVDEDERCIVVRTT---------N----------------------- 129 (194)
T ss_pred CCCCEEEEEcCccceEEEE-ccCC-CCccceEEEEcCCCcEEEEECc---------C-----------------------
Confidence 4455544455666666665 2555 4566777777653 4666421 0
Q ss_pred EEeecccceEEEEEECCC------CcccCcceEEeecCcEEEEEEeecC
Q 016705 87 SLNRPNDGKIEMNFSLPV------GVDPDGFSTSMDDAGVLTLTFKRQR 129 (384)
Q Consensus 87 ~~rERs~GsFsRsI~LPe------~VD~dkIkAsLeNdGVLTITLPK~e 129 (384)
-.|.+.|.+|+ ..+.+.++-.++| -.|.|+..|..
T Consensus 130 -------KKYyKk~~IPDl~R~~l~l~~~~ls~~h~n-NTLIIsYkKP~ 170 (194)
T PF14913_consen 130 -------KKYYKKFSIPDLDRCGLPLEQSALSFAHQN-NTLIISYKKPK 170 (194)
T ss_pred -------ccceeEecCCcHHhhCCCcchhhceeeeec-CeEEEEecCcH
Confidence 16888999997 4578889999999 99999988754
No 95
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=20.62 E-value=1.9e+02 Score=27.68 Aligned_cols=62 Identities=21% Similarity=0.447 Sum_probs=45.2
Q ss_pred eEEEEEECCCCc-ccCcceEEeecCcEEEEEEeecCCCCcceEEeccccccCCCCce-EEEEEeecccCCccceEEEEeC
Q 016705 95 KIEMNFSLPVGV-DPDGFSTSMDDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGF-VDFKAYLAAGTKIEDLVVVIER 172 (384)
Q Consensus 95 sFsRsI~LPe~V-D~dkIkAsLeNdGVLTITLPK~epe~~RrIaIg~~~~~~~~~g~-~~~~~~~~~~~k~edl~v~v~~ 172 (384)
...-.|++|.++ ....|++.... +.|.||. +|. +-++=.|-...|.|+..=+||.
T Consensus 29 EV~i~i~vp~~~~ksk~v~~~Iq~----------------~hI~V~~-------kg~~~ildG~L~~~vk~des~WtiEd 85 (179)
T KOG2265|consen 29 EVEIQIPVPPGTAKSKDVHCSIQS----------------KHIKVGL-------KGQPPILDGELSHSVKVDESTWTIED 85 (179)
T ss_pred heEEEeecCCCCcccceEEEEeee----------------eEEEEec-------CCCCceecCccccccccccceEEecC
Confidence 455666777776 66666666666 5666653 344 5666677788899999999999
Q ss_pred CeEEEEe
Q 016705 173 GKYLIVG 179 (384)
Q Consensus 173 ~~~~v~g 179 (384)
++++|+=
T Consensus 86 ~k~i~i~ 92 (179)
T KOG2265|consen 86 GKMIVIL 92 (179)
T ss_pred CEEEEEE
Confidence 9998875
No 96
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=20.47 E-value=5.3e+02 Score=22.41 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=24.9
Q ss_pred EEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCCc-ceEEe
Q 016705 96 IEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDL-RNVAM 138 (384)
Q Consensus 96 FsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~~-RrIaI 138 (384)
++-++.-|+.+ .+.++.+.++ |.|.|...+.-.... -.|.|
T Consensus 21 ~~v~v~~~~~l-~~~i~~~v~~-g~L~I~~~~~~~~~~~~~v~V 62 (181)
T PF10988_consen 21 PSVEVEADENL-LDRIKVEVKD-GTLKISYKKNISGSKPVKVRV 62 (181)
T ss_dssp -EEEEEEEHHH-HCCEEEEEET-TEEEEEE-SCCTCTSTEEEEE
T ss_pred cEEEEEEChhh-cceEEEEEEC-CEEEEEECCCcCCCccEEEEE
Confidence 34455555544 5788899999 999999985443322 34444
No 97
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=20.36 E-value=3.3e+02 Score=27.90 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=65.7
Q ss_pred CCeeeEEEeCCeEEEEEeccCCCCCCCCeEEEEECCEEEEEEEEeecCCCCCCCCCCCcccchhhccccccccCceEEee
Q 016705 11 DPVSAIWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNR 90 (384)
Q Consensus 11 ~P~VDV~ETDDeyII~A~FDLPGVkKEDIsIeVdddvLtISGERk~e~~~~e~sAsss~ss~~s~l~kneEard~~~~rE 90 (384)
.-+.|+..++..++|.+ -.-|.-++--.|+.+.-.|.|+-.-. ..+
T Consensus 214 ~cR~Dwhqt~~~Vti~V--Y~k~~lpe~s~iean~~~l~V~ivf~-----~gn--------------------------- 259 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINV--YAKGALPETSNIEANGTTLHVSIVFG-----FGN--------------------------- 259 (320)
T ss_pred cchhhhhhcCCeEEEEE--EeccCCcccceeeeCCeEEEEEEEec-----CCC---------------------------
Confidence 34678899999888887 77888888888888887777764321 010
Q ss_pred cccceEEEEEECCCCcccCcceEEeecCcEEEEEEeecCCCCcce
Q 016705 91 PNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDLRN 135 (384)
Q Consensus 91 Rs~GsFsRsI~LPe~VD~dkIkAsLeNdGVLTITLPK~epe~~Rr 135 (384)
.+|...+.|=.-|+.++.++.|-. --..|+|+|.++-..-+
T Consensus 260 ---a~fd~d~kLwgvvnve~s~v~m~~-tkVEIsl~k~ep~sWa~ 300 (320)
T KOG1667|consen 260 ---ASFDLDYKLWGVVNVEESSVVMGE-TKVEISLKKAEPGSWAR 300 (320)
T ss_pred ---ceeeccceeeeeechhhceEEeec-ceEEEEEeccCCCCccc
Confidence 057777777777899999999999 88999999998865543
Done!