RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016705
(384 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 46.8 bits (112), Expect = 8e-07
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 28/110 (25%)
Query: 16 IWEEDERSVHFKVFLA-SGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFS 74
I E+ + F V L G K E++K+ ++D ++++ H
Sbjct: 2 IKEDKD---AFVVKLDVPGFKPEELKVKVEDNRVLV----KGKH---------------- 38
Query: 75 FLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLT 124
+ EE D + + F LP DPD S+ D GVLT+T
Sbjct: 39 ---EKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASLKD-GVLTVT 84
Score = 41.4 bits (98), Expect = 6e-05
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 144 KDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNN-F-R 201
K+ K FV K + G K E+L V +E + L+ G +KE+E D ++ F R
Sbjct: 3 KEDKDAFV-VKLDVP-GFKPEELKVKVEDNRVLVKGK-HEKEEEDDHGLRSERSYRSFSR 59
Query: 202 SFLFPDGVDPFGFSTSMDDAGVLTLT 227
F+ P+ DP S+ D GVLT+T
Sbjct: 60 KFVLPENADPDKVKASLKD-GVLTVT 84
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 46.0 bits (110), Expect = 1e-06
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
E + + + L G K+ED+K+ ++DG L I S
Sbjct: 2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTI-------------SGER--------- 38
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
++ EE + + G +F LP VDPD S+++ GVLT+T +
Sbjct: 39 EEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLPK 88
Score = 38.7 bits (91), Expect = 4e-04
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 144 KDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHG----NN 199
++ +V +A L G K ED+ V +E G I G ++E+E + +
Sbjct: 3 YETDDAYV-VEADLP-GFKKEDIKVEVEDGVLTISG---EREEEEEEEENYLRRERSYGS 57
Query: 200 F-RSFLFPDGVDPFGFSTSMDDAGVLTLTFKR 230
F RSF P+ VDP S+++ GVLT+T +
Sbjct: 58 FSRSFRLPEDVDPDKIKASLEN-GVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 44.5 bits (106), Expect = 3e-06
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 31/111 (27%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
W + + V V L G+K+ED+K+ ++D L I S
Sbjct: 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTI-----------------------SGK 36
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
++ EE R+ S G+ E +F LP VDP+ S+++ GVL +T +
Sbjct: 37 REEEEERERSY------GEFERSFELPEDVDPEKSKASLEN-GVLEITLPK 80
Score = 37.2 bits (87), Expect = 0.001
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 160 GTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMD 219
G K ED+ V +E L + +++E+E + S ++ RSF P+ VDP S++
Sbjct: 16 GVKKEDIKVEVE-DNVLTISGKREEEEERERSYGEFE----RSFELPEDVDPEKSKASLE 70
Query: 220 DAGVLTLTFKR 230
+ GVL +T +
Sbjct: 71 N-GVLEITLPK 80
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 36.7 bits (86), Expect = 0.002
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 37/112 (33%)
Query: 18 EEDERSVHFKVFL-ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
++ F+V L G K E++K+ + D KLV+ E
Sbjct: 1 VVNDDDEKFQVTLDVKGFKPEELKVKVSDNKLVV--EG---------------------- 36
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFS----LPVGVDPDGFSTSMDDAGVLTLT 124
K+EE D G + F+ LP GVDPD ++S+ GVLT+
Sbjct: 37 -KHEEREDEH-------GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80
Score = 35.2 bits (82), Expect = 0.006
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 164 EDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNF-RSFLFPDGVDPFGFSTSMDDAG 222
E+L V + K ++ G + +E+E + Y F R + P+GVDP ++S+ G
Sbjct: 21 EELKVKVSDNKLVVEG--KHEEREDE---HGYVSREFTRRYQLPEGVDPDSVTSSLSSDG 75
Query: 223 VLTLT 227
VLT+
Sbjct: 76 VLTIE 80
Score = 27.1 bits (61), Expect = 4.0
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 298 EHEGDTSLKQYEGNNF-RSFLLPDGLGPFGYSTSMDDAGILTLT 340
+HE Y F R + LP+G+ P ++S+ G+LT+
Sbjct: 37 KHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 35.4 bits (82), Expect = 0.015
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 16 IWEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSF 75
I E D+ L G+ +ED++I ++ L I E
Sbjct: 45 IEETDDE-YRITAELP-GVDKEDIEITVEGNTLTIRGEREEE------------------ 84
Query: 76 LKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
+ EE R G+ E F LP VDP+ + G+LT+T +
Sbjct: 85 --EEEEEEGYLRRERAY-GEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLPK 132
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 33.7 bits (78), Expect = 0.19
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 164 EDLVVVIERGKYLIVGMLQKK----EQEG--DTSVKQYHGNNF-RSF------LFPDGVD 210
D VVI+ GK L+ G++ KK EQ D VK+Y G R F L +
Sbjct: 584 HDAYVVIKNGK-LLEGVIDKKAIGAEQGSILDRIVKEY-GPERARRFLDSVTRLAIRFIM 641
Query: 211 PFGFSTSMDD 220
GF+T +DD
Sbjct: 642 LRGFTTGIDD 651
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 28.5 bits (64), Expect = 1.7
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 164 EDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGV 223
EDL V ++ K ++ G +KK ++ S + R P+ VDP + S+ +G
Sbjct: 21 EDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80
Query: 224 L 224
L
Sbjct: 81 L 81
>gnl|CDD|203520 pfam06803, DUF1232, Protein of unknown function (DUF1232). This
family represents a conserved region of approximately 60
residues within a number of hypothetical bacterial and
archaeal proteins of unknown function.
Length = 40
Score = 26.6 bits (60), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 317 LLPDGLGPFGYSTSMDDAGILTL 339
L+PD + GY +DDA +L L
Sbjct: 20 LIPDFIPVLGY---LDDAAVLAL 39
>gnl|CDD|149337 pfam08219, TOM13, Outer membrane protein TOM13. The TOM13 family
of proteins are mitochondrial outer membrane proteins
that mediate the assembly of beta-barrel proteins.
Length = 78
Score = 27.3 bits (61), Expect = 3.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 52 TEATSSHSPSPSSASSSISSFFSFLKK 78
T A S S S+SSS + +S L+
Sbjct: 10 TSALEEESLSEESSSSSPITIWSILRS 36
>gnl|CDD|206773 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryotic exosome. The
RRP45 subunit of eukaryotic exosome is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally all members of
this family form hexameric rings (trimers of
Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The
eukaryotic exosome core is composed of six individually
encoded RNase PH-like subunits and three additional
proteins (Rrp4, Csl4 and Rrp40) that form a stable cap
and contain RNA-binding domains. The RNase PH-like
subunits are no longer phosphorolytic enzymes, the
exosome directly associates with Rrp44 and Rrp6,
hydrolytic exoribonucleases related to bacterial RNase
II/R and RNase D. The exosome plays an important role in
RNA turnover. It plays a crucial role in the maturation
of stable RNA species such as rRNA, snRNA and snoRNA,
quality control of mRNA, and the degradation of RNA
processing by-products and non-coding transcripts.
Length = 259
Score = 29.0 bits (66), Expect = 3.8
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 89 NRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGV-----LTLTFKRQRAFDL 133
+RPN+G + +N L P + V L + RA D
Sbjct: 64 DRPNEGILFINVELSPMASPAFEPGRPSEEEVELSRLLERALRDSRAVDT 113
>gnl|CDD|187807 cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Csy2. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein; predicted Cas5 ortholog.
Length = 292
Score = 29.0 bits (65), Expect = 4.7
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 57 SHSPSPSSASSSISSFFSF-LKKN--EEARDTSSLNRPNDGKIEMNFSLPVGV---DPDG 110
H + S+ F L +N + T+++ +G+ + SL +GV D
Sbjct: 55 CHGQQLHTYGSAQRWDRVFILTRNPVTKNGKTAAIIE--EGRCHLTVSLVIGVSGQDIAV 112
Query: 111 FSTSMDDAGVLTLTFKRQR 129
F S L ++QR
Sbjct: 113 FEASQALPEHLKHALQQQR 131
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 27.1 bits (60), Expect = 4.9
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 164 EDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFL----FPDGVDPFGFSTSMD 219
E+LVV + G I G ++K+ E HG R F P GVDP ++S+
Sbjct: 24 EELVVKTKDGVVEITGKHEEKQDE--------HGFVSRCFTRKYTLPPGVDPTAVTSSLS 75
Query: 220 DAGVLTL 226
G+LT+
Sbjct: 76 PDGILTV 82
>gnl|CDD|221762 pfam12768, Rax2, Cortical protein marker for cell polarity.
Diploid yeast cells repeatedly polarize and bud from
their poles, due probably to the presence of highly
stable membrane markers, and Rax2 is one such marker. It
is inherited immutably at the cell cortex for multiple
generations, and has a half-life exceeding several
generations. The persistent inheritance of cortical
protein markers would provide a means of coupling a
cell's history with the future development of a precise
morphogenetic form. Both Rax1 and Rax2 localise to the
distal pole as well as to the division site and they
interact both with each other and with Bud8p and Bud9p
in the establishment and/or maintenance of the cortical
markers for bipolar budding. thus Rax2 is likely to
control cell polarity during vegetative growth, and in
fission yeast this is done by regulating the
localisation of for3p.
Length = 276
Score = 28.8 bits (65), Expect = 5.1
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 301 GDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAGILTLTFTILKPNKKLVSKSKLL 357
G T L Y+G+ + S FG T++ +L L+ + N L+ ++L
Sbjct: 110 GSTFLAGYDGSKWNSV----DSDIFGDGTTIRGLQLLPLSSS--HDNTDLLDNDQIL 160
>gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated.
Length = 113
Score = 27.3 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 202 SFLFP-----DGVDPFGFSTSMDDAGVLTL 226
SFLFP + + PFGF T + +LTL
Sbjct: 70 SFLFPWCVLYNQIAPFGFWTMVGFLFILTL 99
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 26.6 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 100 FSLPVGVDPDGFSTSMDDAGVLTLT 124
+ LP GVDP ++S+ GVLT++
Sbjct: 56 YRLPPGVDPAAITSSLSADGVLTIS 80
>gnl|CDD|204831 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
This domain is found in bacteria. This domain is about
360 amino acids in length. This domain is found
associated with pfam00271, pfam00176. The function of
this domain is not known, but structurally it forms an
alpha-beta fold in nature with a central beta-sheet
flanked by helices and loops, the beta-sheet being
mainly antiparallel and flanked by four alpha helices,
among which the two longer helices exhibit a coiled-coil
arrangement.
Length = 362
Score = 28.3 bits (64), Expect = 7.5
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 79 NEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFDLRNVA- 137
E+ + S + RP G+ + P G+ DG +T+TF R A +V
Sbjct: 126 QEDHGENSIVLRP--GEHMLVPDFP-GLPEDG----------MTVTFDRDTALSREDVQF 172
Query: 138 MGWEH 142
+ WEH
Sbjct: 173 LTWEH 177
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 28.1 bits (62), Expect = 9.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 10 PDPVSAIWEEDERSVHF--KVFLASG 33
P PV+ W++ ERS +F K+F A G
Sbjct: 332 PPPVTPRWDDFERSKNFSKKIFSAMG 357
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family
of related proteins that is plant specific.
Length = 313
Score = 28.0 bits (62), Expect = 9.7
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 54 ATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLNRP 91
A +S S + ++S SS F K+ + L+
Sbjct: 43 APASPPSSSPARNTSSSSSFGLSKQRPSSLSRGRLSSR 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,885,898
Number of extensions: 1940424
Number of successful extensions: 1581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1578
Number of HSP's successfully gapped: 34
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)