RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016705
(384 letters)
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 65.6 bits (159), Expect = 4e-12
Identities = 35/265 (13%), Positives = 77/265 (29%), Gaps = 32/265 (12%)
Query: 97 EMNFSLPVGVDPDGFSTSMDDAGVLTL-----TFKRQRAFDLRNVAMGWEHAKDSKKGF- 150
+ P + F + M + + + + +L + +E KD + F
Sbjct: 56 NLFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFK 115
Query: 151 VDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVD 210
V F K E++ + + L+V + + RS P VD
Sbjct: 116 VYFNV---KNFKAEEITIKAD-KNKLVVRAQKSVACGDAAMSESVG----RSIPLPPSVD 167
Query: 211 PFGFSTSMDDAGVLTLTFKRLMPFLSSTVPEGAFENVIMGWDWEHAKDSRKGFVDFKAY- 269
++ VL + P + I + + + + K +
Sbjct: 168 RNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVT 227
Query: 270 -------------LAAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSLKQYEGNNF-RS 315
+ +D+ + G K G + E + E F ++
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHG--VTGKEEKTENASHSEHREFYKA 285
Query: 316 FLLPDGLGPFGYSTSMDDAGILTLT 340
F+ P+ + + D G++ +
Sbjct: 286 FVTPEVVDASKTQAEIVD-GLMVVE 309
Score = 62.2 bits (150), Expect = 5e-11
Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 56/239 (23%)
Query: 14 SAIWEEDERSVHFKVFL-ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSF 72
A + +HFKV+ K E++ I KLV+ +
Sbjct: 102 DAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQ------------------- 142
Query: 73 FSFLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRAFD 132
+A + S+ R + LP VD + ++ VL +
Sbjct: 143 --KSVACGDAAMSESVGR--------SIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNY 192
Query: 133 LRNVAMGWEHAKDSKKGFVDFKAY------------------------LAAGTKIEDLVV 168
+ + + + +D+ V
Sbjct: 193 KAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKV 252
Query: 169 VIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLT 227
+ K + G+ KE++ + + H +++F+ P+ VD + D G++ +
Sbjct: 253 WAKGNKVYVHGV-TGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVD-GLMVVE 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 9e-10
Identities = 43/199 (21%), Positives = 61/199 (30%), Gaps = 59/199 (29%)
Query: 1 MGLIVD-RKKPDPVSAIWEE-DERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSS- 57
MG+ D K +W D HFK + I D I+ +
Sbjct: 1631 MGM--DLYKTSKAAQDVWNRADN---HFK---------DTYGFSILD----IVINNPVNL 1672
Query: 58 --HSPSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSM 115
H K+ E DGK++ + + + + STS
Sbjct: 1673 TIHFGGEKG------------KRIRENYSAMIFETIVDGKLK---TEKIFKEINEHSTSY 1717
Query: 116 ---DDAGVLTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAYLA-------------A 159
+ G+L+ T Q A L A +E K KG + A A A
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAA-FEDLK--SKGLIPADATFAGHSLGEYAALASLA 1774
Query: 160 GT-KIEDLV-VVIERGKYL 176
IE LV VV RG +
Sbjct: 1775 DVMSIESLVEVVFYRGMTM 1793
Score = 36.2 bits (83), Expect = 0.019
Identities = 60/390 (15%), Positives = 111/390 (28%), Gaps = 124/390 (31%)
Query: 10 PDPVSAIWEEDERS------VHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSS------ 57
P+P +DE + F +++S ++ V Q L + TE +
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-TEFENCYLEGND 100
Query: 58 -HS---PSPSSASSSISSFFSFLKKNEEARDTSSLNRPNDGKIEMNFS-LPVGVDPDGFS 112
H+ +++ +K AR + RP D K S L F
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMA--KRPFDKKSN---SAL--------FR 147
Query: 113 TSMDDAGVLTLTFKRQ----RAFD-LRNVAMGWEHAKDSKKGFVDFKAYLAAGTKIEDLV 167
+ L F Q F+ LR++ ++ Y + DL+
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDL----------------YQTY---HVLVGDLI 188
Query: 168 VVIERGKYLIVGMLQKKEQEGDTSVKQY-HGNNFRSFL-----FPDGVD---------PF 212
L + + + K + G N +L PD D P
Sbjct: 189 KFSAE-------TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSIPISCPL 240
Query: 213 GFSTSM----DDAGVLTLTFKRLMPFLSSTVPEGAFENVI------MGWDWEHAKDSRKG 262
+ A +L T L +L G + ++ WE S +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 263 FVDF---------KAY-------------LAAGTKIEDLMIGIDGGKYLTIGMLEKKEHE 300
+ +AY L + M+ I LT ++ ++
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNK 355
Query: 301 GDTSLKQYEG------NNFRSFLLPDGLGP 324
++ L + N ++ ++ GP
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVS---GP 382
Score = 35.0 bits (80), Expect = 0.049
Identities = 42/294 (14%), Positives = 73/294 (24%), Gaps = 138/294 (46%)
Query: 136 VAMG-------------WEHAKDSKKGFVDFKAYLAAGTKIEDLV------VVI----ER 172
MG W A D G I D+V + I E+
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRA--------DNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 173 GKYLIVG-MLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKRL 231
GK + E D +K +F + + T + G+L+ T
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEK-------IFKEINEHSTSYTFRSEKGLLSAT---- 1729
Query: 232 MPFLSSTVPEGAFENVIMGWD---WEHAKDSRKGFVDFKAYLAAGTKIEDLMIGIDGGKY 288
T P A + + +E K KG + A AG
Sbjct: 1730 ----QFTQP--A----LTLMEKAAFEDLKS--KGLIPADATF-AG--------------- 1761
Query: 289 LTIGMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFG-YS--TSMDDAGILTLTFTILK 345
H SL G Y+ S+ A ++++ +
Sbjct: 1762 ----------H----SL--------------------GEYAALASL--ADVMSIESLV-- 1783
Query: 346 PNKKLVSK-SKLLA-------------GMARVVPACLMIGC------EISDKIS 379
++V + GM + P + + +++
Sbjct: 1784 ---EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Score = 32.7 bits (74), Expect = 0.24
Identities = 39/264 (14%), Positives = 67/264 (25%), Gaps = 107/264 (40%)
Query: 84 DTSSLNRP---NDGKIEMNFSLPVGV--------------------------DPD----- 109
D S RP + G +E +P +P
Sbjct: 2 DAYST-RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 110 -----GFSTSMDDAG-------VLTLTFKR-QRAF----DLRNVA---MGWEHAKDSKKG 149
G+ +S+ + VL L + + D+ +A + K
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 150 FVDFKAYLAA-------GTKIED--LVVVIERGK---YLIVGMLQKKEQEGDTSVKQYHG 197
+ K Y+ A K + L + G I G G Q G
Sbjct: 121 EL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--------G-----Q--G 164
Query: 198 NNFRSF-----LF---PDGVDPFGFSTSMDDAGVLTLTFKRLMPFLSSTV-PEGAFENVI 248
N F L+ V + + + L + +T+ E F +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDL-----------IKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 249 MGWDWEHAKDSRKGFVDFKAYLAA 272
+W + K YL +
Sbjct: 214 NILEWLENPSNTPD----KDYLLS 233
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 46.7 bits (111), Expect = 2e-06
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 22/111 (19%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
E ++ + +L G+ +ED+ + L I + +
Sbjct: 61 IIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPL------------------- 100
Query: 77 KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
E R S + +I LP V + S ++ GVL++ +
Sbjct: 101 MITESERIIYSEIP-EEEEIYRTIKLPATVKEENASAKFEN-GVLSVILPK 149
Score = 32.8 bits (75), Expect = 0.090
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 160 GTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYH-------GNNFRSFLFPDGVDPF 212
G ED+++ I K+ T ++ +R+ P V
Sbjct: 76 GVNKEDIILNAVGDTLEIRA---KRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE 132
Query: 213 GFSTSMDDAGVLTLTFKR 230
S ++ GVL++ +
Sbjct: 133 NASAKFEN-GVLSVILPK 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 44.8 bits (107), Expect = 2e-06
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 28/117 (23%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
+E+ L G+ +++ + G L I E
Sbjct: 9 IKEEVNHFVLYADLP-GIDPSQIEVQMDKGILSIRGE----------------------- 44
Query: 77 KKNEEARDTSSLNRP--NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTF-KRQRA 130
+K+E + +T +R G F+LP D DG + + + GVL + KR A
Sbjct: 45 RKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRN-GVLEIRIPKRPAA 100
Score = 33.2 bits (77), Expect = 0.027
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 160 GTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYH------GNNFRSFLFPDGVDPFG 213
G + V +++G I G +++ E T +++ G+ R F PD D G
Sbjct: 24 GIDPSQIEVQMDKGILSIRG---ERKSESSTETERFSRIERRYGSFHRRFALPDSADADG 80
Query: 214 FSTSMDDAGVLTLTF 228
+ + + GVL +
Sbjct: 81 ITAAGRN-GVLEIRI 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 52/377 (13%), Positives = 99/377 (26%), Gaps = 89/377 (23%)
Query: 5 VDRKKPDPVSAIWE---EDERS----VHFKVFLASGM----KQEDVKIVIQDGKLVIMTE 53
V R P + + E + + G+ K V K+ +
Sbjct: 131 VSR--LQPYLKLRQALLELRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 54 -----ATSSHSPSPSSASSSISSFFSFLKKNEEARDTSSLN---RPNDGKIEMNF----- 100
+ SP + + + N +R S N R + + E+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 101 ----SLPV--GV-DP---DGFSTSMDDAG--VLTLTFKRQRAFDLRNVAMGWEHAKDSKK 148
L V V + + F + +L T +Q L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 149 GFVDFKA--YLA--AGTKIEDLVVVIERGKYLIVGMLQKKEQEG-DTS--VKQYHGNNFR 201
+ L + +DL + + ++ + ++G T K + +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 202 SFLFPDGVDPFGFSTSMD--DAGVLTLTFKRLMPFLSST-VPEGAFENVIMGWDWEHAKD 258
+ + +S++ + F RL F S +P + W D
Sbjct: 357 TII----------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS---LIWFDVIKSD 403
Query: 259 SRKGFVDFKAYLAAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSL-----KQYEGNNF 313
Y + ++ I I I + K + E + +L Y N
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPS-----IYLELKVKLENEYALHRSIVDHY---NI 455
Query: 314 RSFLLPDGLGP---FGY 327
D L P Y
Sbjct: 456 PKTFDSDDLIPPYLDQY 472
Score = 39.8 bits (92), Expect = 0.001
Identities = 40/236 (16%), Positives = 65/236 (27%), Gaps = 75/236 (31%)
Query: 18 EEDERSVHFK---VFLASGMKQEDVKI---VIQ-----DGKLVIMTEATSSHSPS----- 61
E E F VF I ++ K +M H S
Sbjct: 367 EPAEYRKMFDRLSVF------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 62 PSSASSSISS-FFSFLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDA-- 118
P ++ SI S + K E +L+R I ++++P D D D
Sbjct: 421 PKESTISIPSIYLELKVKLENEY---ALHR----SIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 119 ----G------------------VLTLTFKRQRAFDLRNVAMGWEHAKDSKKGFVDFKAY 156
G L F Q+ +R+ + W + K Y
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDSTAWNASGSILNTLQQLKFY 530
Query: 157 LAAGTK-----------IEDLVVVIE----RGKYL-IV--GMLQKKEQEGDTSVKQ 194
I D + IE KY ++ ++ + E + + KQ
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 39.8 bits (93), Expect = 2e-04
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 158 AAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTS 217
EDL V ++ I G +++ + +++H R + P VD S S
Sbjct: 20 VKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFH----RRYRLPSNVDQSALSCS 75
Query: 218 MDDAGVLTLTFKRLMPFLSSTVPE 241
+ G+LT + ++ + + E
Sbjct: 76 LSADGMLTFSGPKIPSGVDAGHSE 99
Score = 37.1 bits (86), Expect = 0.001
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 32/118 (27%)
Query: 11 DPVSAIWEEDERSVHFKVFL-ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSI 69
+S + + + F +FL ED+ + +Q+ + I
Sbjct: 2 SGISEVRSDRD---KFVIFLDVKHFSPEDLTVKVQEDFVEI--HG--------------- 41
Query: 70 SSFFSFLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
K NE D ++R + LP VD S S+ G+LT + +
Sbjct: 42 -------KHNERQDDHGYISRE----FHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 88
Score = 28.3 bits (63), Expect = 1.3
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 271 AAGTKIEDLMIGIDGGKYLTIGMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTS 330
EDL + + G +++ + +++ R + LP + S S
Sbjct: 20 VKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREF----HRRYRLPSNVDQSALSCS 75
Query: 331 MDDAGILTLTFTILKPNKKLVSKSK 355
+ G+LT + + +
Sbjct: 76 LSADGMLTFSGPKIPSGVDAGHSER 100
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 40.0 bits (94), Expect = 3e-04
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 28/112 (25%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGK-LVIMTEATSSHSPSPSSASSSISSFFSF 75
W+E + FK L G+K+E+VK+ ++DG LV+ E
Sbjct: 48 WKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGE---------------------- 84
Query: 76 LKKNEEARDTSSLNRP--NDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTF 125
+ E+ +R + GK F L + +++ GVLT+T
Sbjct: 85 -RTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTV 134
Score = 37.7 bits (88), Expect = 0.002
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 144 KDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYH------G 197
K++ + V FKA L G K E++ V +E G L+V + KE+E ++H G
Sbjct: 49 KETPEAHV-FKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKN--DKWHRVERSSG 104
Query: 198 NNFRSFLFPDGVDPFGFSTSMDDAGVLTLTF 228
R F + +++ GVLT+T
Sbjct: 105 KFVRRFRLLEDAKVEEVKAGLEN-GVLTVTV 134
Score = 31.5 bits (72), Expect = 0.23
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 22/147 (14%)
Query: 200 FRSFLFPDGVDPFG-FSTSMDDAGVLTLTFKRLMPFLSSTVPEGAFENVIMGWDWEHAKD 258
RS +F DPF D F+ ++P +S E A DW K+
Sbjct: 5 RRSNVF----DPFADLWADPFDT------FRSIVPAISGGGSETA-AFANARMDW---KE 50
Query: 259 SRKGFVDFKAYLAAGTKIEDLMIGIDGGKYLTIGMLEKKEHE--GDTSLKQ--YEGNNFR 314
+ + V FKA L G K E++ + ++ G L + KE E D + G R
Sbjct: 51 TPEAHV-FKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVR 108
Query: 315 SFLLPDGLGPFGYSTSMDDAGILTLTF 341
F L + +++ G+LT+T
Sbjct: 109 RFRLLEDAKVEEVKAGLEN-GVLTVTV 134
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 37.8 bits (88), Expect = 7e-04
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 139 GWEHAKDSKKGFVDFKAYLAAGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGN 198
F + E++ V + + +++ E +++H
Sbjct: 2 AMAQVPTDPGYFS-VLLDVK-HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFH-- 57
Query: 199 NFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKRLMP 233
R + P GVDP ++++ GVL++
Sbjct: 58 --RRYRLPPGVDPAAVTSALSPEGVLSIQATPASA 90
Score = 36.3 bits (84), Expect = 0.002
Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 32/116 (27%)
Query: 13 VSAIWEEDERSVHFKVFL-ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISS 71
++ + + +F V L E++ + + + +
Sbjct: 3 MAQVPTDPG---YFSVLLDVKHFSPEEISVKVVGDHVEVHA------------------- 40
Query: 72 FFSFLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
+ E + + R + + LP GVDP ++++ GVL++
Sbjct: 41 -----RHEERPDEHGFIAR----EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATP 87
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 277 EDLMIGIDGGKYLTI-GMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAG 335
E++ + + G ++ + E++ E +++ R + LP G+ P ++++ G
Sbjct: 25 EEISVKVVGD-HVEVHARHEERPDEHGFIAREFH----RRYRLPPGVDPAAVTSALSPEG 79
Query: 336 ILTLTFTILKPNKKL 350
+L++ T L
Sbjct: 80 VLSIQATPASAQASL 94
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 38.0 bits (89), Expect = 9e-04
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 29/110 (26%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKI-VIQDGKLVIMTEATSSHSPSPSSASSSISSFFSF 75
E+ + LA G +E +K V +L+I E
Sbjct: 29 MYEEGGYLVVVADLA-GFNKEKIKARVSGQNELIIEAE---------------------- 65
Query: 76 LKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGF-STSMDDAGVLTLT 124
++ E RP + LP V D S ++ GVLT+
Sbjct: 66 -REITEPGVKYLTQRP--KYVRKVIRLPYNVAKDAEISGKYEN-GVLTIR 111
Score = 37.6 bits (88), Expect = 0.001
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 160 GTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDP-FGFSTSM 218
G E + + LI+ ++ + G + Q + P V S
Sbjct: 44 GFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY 103
Query: 219 DDAGVLTLT 227
++ GVLT+
Sbjct: 104 EN-GVLTIR 111
Score = 37.6 bits (88), Expect = 0.001
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 228 FKRLMPFLSSTVPEGAFENVIMGWDWEHAKDSRKGFVDFKAYLAAGTKIEDLMIGIDGGK 287
+ + S + G +E V D + V A LA G E + + G
Sbjct: 4 LGKELQKRSEELSRGFYELVYPPVDM---YEEGGYLV-VVADLA-GFNKEKIKARVSGQN 58
Query: 288 YLTIGMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGY-STSMDDAGILTLTFTILKP 346
L I + G L Q + LP + S ++ G+LT+ I
Sbjct: 59 ELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN-GVLTIRIPIAGT 117
Query: 347 NKK 349
+
Sbjct: 118 SVF 120
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 36.7 bits (85), Expect = 0.001
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 29/101 (28%)
Query: 25 HFKVFL-ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEAR 83
F V L E++K+ + + + K E
Sbjct: 7 RFSVNLDVKHFSPEELKVKVLGDVIEV-------------HG-----------KHEERQD 42
Query: 84 DTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLT 124
+ ++R + + +P VDP ++SM GVLT+
Sbjct: 43 EHGFISR----EFHRKYRIPADVDPLTITSSMSSDGVLTVN 79
Score = 35.5 bits (82), Expect = 0.003
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 164 EDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGV 223
E+L V + + G ++++ E +++H R + P VDP ++SM GV
Sbjct: 20 EELKVKVLGDVIEVHGKHEERQDEHGFISREFH----RKYRIPADVDPLTITSSMSSDGV 75
Query: 224 LTLT 227
LT+
Sbjct: 76 LTVN 79
Score = 29.3 bits (66), Expect = 0.47
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 277 EDLMIGIDGGKYLTI-GMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAG 335
E+L + + G + + G E+++ E +++ R + +P + P ++SM G
Sbjct: 20 EELKVKVLGD-VIEVHGKHEERQDEHGFISREFH----RKYRIPADVDPLTITSSMSSDG 74
Query: 336 ILTLT 340
+LT+
Sbjct: 75 VLTVN 79
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 36.2 bits (84), Expect = 0.002
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 164 EDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGV 223
++L V + G I G ++ E + + R + P GVDP S+S+ G
Sbjct: 21 DELTVKTKDGVVEITGKHAARQDEHGYISRCFT----RKYTLPPGVDPTQVSSSLSPEGT 76
Query: 224 LTLT 227
LT+
Sbjct: 77 LTVE 80
Score = 35.8 bits (83), Expect = 0.003
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 29/101 (28%)
Query: 25 HFKVFLA-SGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFLKKNEEAR 83
++V L + +++ + +DG + I K
Sbjct: 8 RWRVSLDVNHFAPDELTVKTKDGVVEI--TG----------------------KHAARQD 43
Query: 84 DTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLT 124
+ ++R ++LP GVDP S+S+ G LT+
Sbjct: 44 EHGYISR----CFTRKYTLPPGVDPTQVSSSLSPEGTLTVE 80
Score = 28.1 bits (63), Expect = 1.4
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 277 EDLMIGIDGGKYLTI-GMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAG 335
++L + G + I G ++ E + + R + LP G+ P S+S+ G
Sbjct: 21 DELTVKTKDGV-VEITGKHAARQDEHGYISRCFT----RKYTLPPGVDPTQVSSSLSPEG 75
Query: 336 ILTLT 340
LT+
Sbjct: 76 TLTVE 80
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 37.2 bits (86), Expect = 0.003
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 32/119 (26%)
Query: 10 PDPVSAIWEEDERSVHFKVFL-ASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSS 68
+S + E + F V L E++K+ + + +
Sbjct: 62 DTGLSEMRLEKD---RFSVNLDVKHFSPEELKVKVLGDVIEV-------------HG--- 102
Query: 69 ISSFFSFLKKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
K E + ++R + + +P VDP ++S+ GVLT+ R
Sbjct: 103 --------KHEERQDEHGFISR----EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149
Score = 37.2 bits (86), Expect = 0.004
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 164 EDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGV 223
E+L V + + G ++++ E +++H R + P VDP ++S+ GV
Sbjct: 87 EELKVKVLGDVIEVHGKHEERQDEHGFISREFH----RKYRIPADVDPLTITSSLSSDGV 142
Query: 224 LTLTFKRLMP 233
LT+ R
Sbjct: 143 LTVNGPRKQV 152
Score = 29.9 bits (67), Expect = 0.91
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 277 EDLMIGIDGGKYLTI-GMLEKKEHEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAG 335
E+L + + G + + G E+++ E +++ R + +P + P ++S+ G
Sbjct: 87 EELKVKVLGD-VIEVHGKHEERQDEHGFISREFH----RKYRIPADVDPLTITSSLSSDG 141
Query: 336 ILTLT 340
+LT+
Sbjct: 142 VLTVN 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.21
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 348 KKLVSKSKLLA-GMARVVPACLMIGCEI 374
KKL + KL A A PA L I +
Sbjct: 23 KKLQASLKLYADDSA---PA-LAIKATM 46
Score = 31.5 bits (70), Expect = 0.26
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 22/50 (44%)
Query: 295 EKKE-HEGDTSLKQYEGNNFRSFLLPDGLGPFGYSTSMDDAGILTLTFTI 343
EK+ + SLK Y D P A L + T+
Sbjct: 18 EKQALKKLQASLKLYA---------DDS-AP---------A--LAIKATM 46
>4a3x_A EPA1P; cell adhesion; HET: LAT; 1.65A {Candida glabrata}
Length = 227
Score = 28.6 bits (63), Expect = 3.2
Identities = 17/125 (13%), Positives = 26/125 (20%), Gaps = 6/125 (4%)
Query: 171 ERGKYLIVGMLQKKEQEGDTSVKQYHGNNFRSFLFPDGVDPFGFSTSMDDAGVLTLTFKR 230
+G +G L + P F+ S DD +
Sbjct: 77 TKGCTPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGN 136
Query: 231 LMPFLSSTVPEGAFENVIMGWDWEHAKDSRKGFVDFKAYLAAGTK--IEDLMIGIDGGKY 288
F N W + V +L AG I +
Sbjct: 137 AFDCCRRDSSADHFGNYQAYAIWGSKTAKDELTV----HLDAGVYYPIRLFYNNREYDGA 192
Query: 289 LTIGM 293
L+
Sbjct: 193 LSFTF 197
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain,
PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin;
HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP:
c.23.6.1 d.230.4.1
Length = 262
Score = 28.4 bits (63), Expect = 3.6
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 76 LKKNEEARDTSSL----NRPNDGKIEMNFSLPVGVDPDG 110
K+ ++ D + + NDGK++++F+LP+ +
Sbjct: 10 KKEFDKVLDLERVKPYGDTMNDGKVQLSFTLPLKNNERS 48
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 28.1 bits (63), Expect = 4.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 356 LLAGMARVVPACLMIGCEISDKISG 380
LL ++ + P L++G EI K+S
Sbjct: 60 LLVELSPLFPDTLILGLEIRVKVSD 84
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 27.1 bits (60), Expect = 5.4
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 17 WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVI 50
W+++ ++ + + +KI + K+ +
Sbjct: 9 WDQELNEINIQFPVTGDADSSAIKIRMVGKKICV 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,984,294
Number of extensions: 369356
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 48
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)