RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 016705
         (384 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 22/114 (19%)

Query: 17  WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
             E ++ +    +L  G+ +ED+ +      L I  + +                     
Sbjct: 15  IIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLM------------------ 55

Query: 77  KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKRQRA 130
               E+        P + +I     LP  V  +  S   ++ GVL++   +  +
Sbjct: 56  --ITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFEN-GVLSVILPKAES 106



 Score = 34.2 bits (78), Expect = 0.007
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 159 AGTKIEDLVVVIERGKYLIVGMLQKKEQEGDTSVKQYH-----GNNFRSFLFPDGVDPFG 213
            G   ED+++    G  L +   +      ++    Y         +R+   P  V    
Sbjct: 29  PGVNKEDIILNAV-GDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN 87

Query: 214 FSTSMDDAGVLTLTFKR 230
            S   ++ GVL++   +
Sbjct: 88  ASAKFEN-GVLSVILPK 103


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 29.0 bits (64), Expect = 0.61
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 22/111 (19%)

Query: 17  WEEDERSVHFKVFLASGMKQEDVKIVIQDGKLVIMTEATSSHSPSPSSASSSISSFFSFL 76
           W+E   +  FK  L  G+K+E+VK+ ++DG +++++   +                    
Sbjct: 47  WKETPEAHVFKADL-PGVKKEEVKVEVEDGNVLVVSGERT-------------------- 85

Query: 77  KKNEEARDTSSLNRPNDGKIEMNFSLPVGVDPDGFSTSMDDAGVLTLTFKR 127
           K+ E+  D       + GK    F L      +     +++ GVLT+T  +
Sbjct: 86  KEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPK 135


>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
           domain {Bacillus anthracis [TaxId: 1392]}
          Length = 287

 Score = 27.6 bits (61), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 32  SGMKQEDVKIVIQDGKLVIMTEAT 55
            G++ +DV+I+ Q  K  I  +A 
Sbjct: 262 IGLEIKDVQIIKQSEKEYIRIDAK 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,447,305
Number of extensions: 67371
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 6
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)