Query 016706
Match_columns 384
No_of_seqs 238 out of 803
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 2.1E-18 7.3E-23 133.5 0.1 57 240-311 5-61 (63)
2 4gat_A Nitrogen regulatory pro 99.6 7.4E-18 2.5E-22 131.6 -1.3 57 240-311 7-63 (66)
3 2vut_I AREA, nitrogen regulato 99.6 1.2E-16 4E-21 115.3 1.6 42 243-288 2-43 (43)
4 4hc9_A Trans-acting T-cell-spe 99.6 4.3E-17 1.5E-21 139.0 -1.3 80 204-311 34-113 (115)
5 1gnf_A Transcription factor GA 99.6 3.6E-16 1.2E-20 114.3 3.5 42 242-287 4-45 (46)
6 2kae_A GATA-type transcription 99.6 2.1E-16 7.3E-21 124.9 1.0 46 241-289 7-52 (71)
7 4hc9_A Trans-acting T-cell-spe 99.2 2.7E-12 9.2E-17 109.4 1.5 45 241-289 4-48 (115)
8 1dl6_A Transcription factor II 68.8 3.6 0.00012 30.6 3.0 42 242-286 11-54 (58)
9 1pft_A TFIIB, PFTFIIBN; N-term 67.0 1.9 6.5E-05 30.6 1.2 41 242-285 5-47 (50)
10 3k7a_M Transcription initiatio 52.8 8.2 0.00028 37.3 3.2 43 242-285 21-65 (345)
11 3cw2_K Translation initiation 51.0 6.4 0.00022 34.3 1.9 32 242-274 103-134 (139)
12 2d74_B Translation initiation 47.3 6.5 0.00022 34.7 1.4 32 243-275 105-136 (148)
13 2yrk_A Zinc finger homeobox pr 46.0 6.1 0.00021 29.8 0.8 19 257-275 6-24 (55)
14 1qyp_A RNA polymerase II; tran 42.4 5 0.00017 29.2 -0.1 35 242-276 15-55 (57)
15 2apo_B Ribosome biogenesis pro 40.9 17 0.00057 27.7 2.6 51 242-311 6-56 (60)
16 1nee_A EIF-2-beta, probable tr 40.5 6.5 0.00022 34.2 0.3 31 243-274 103-133 (138)
17 2yrc_A Protein transport prote 38.7 8.4 0.00029 28.9 0.6 43 239-284 6-50 (59)
18 1k81_A EIF-2-beta, probable tr 36.9 2.8 9.7E-05 28.6 -2.1 31 244-275 2-32 (36)
19 2crr_A Stromal membrane-associ 30.4 28 0.00096 30.2 2.7 50 242-293 29-79 (141)
20 2b0o_E UPLC1; arfgap, structur 29.8 16 0.00053 33.8 1.0 46 242-289 42-88 (301)
21 2olm_A Nucleoporin-like protei 28.2 19 0.00064 31.2 1.2 49 242-292 25-73 (140)
22 2iqj_A Stromal membrane-associ 26.0 16 0.00055 31.4 0.3 50 242-293 27-77 (134)
23 2zjr_Z 50S ribosomal protein L 24.6 22 0.00077 26.7 0.9 26 240-275 28-53 (60)
24 2g2k_A EIF-5, eukaryotic trans 24.4 11 0.00037 34.1 -1.1 31 244-275 98-130 (170)
25 3cng_A Nudix hydrolase; struct 24.4 23 0.00078 30.3 1.0 30 242-271 3-32 (189)
26 2crw_A ARF GAP 3, ADP-ribosyla 23.2 28 0.00096 30.6 1.3 47 242-290 29-76 (149)
27 3dwd_A ADP-ribosylation factor 23.1 25 0.00086 31.0 1.0 50 242-293 38-88 (147)
28 2owa_A Arfgap-like finger doma 23.1 26 0.0009 30.3 1.1 50 242-293 36-86 (138)
29 3po3_S Transcription elongatio 21.3 29 0.00099 31.0 1.1 36 240-275 135-176 (178)
30 2e9h_A EIF-5, eukaryotic trans 20.4 18 0.00062 32.2 -0.5 33 243-275 104-137 (157)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.68 E-value=2.1e-18 Score=133.54 Aligned_cols=57 Identities=35% Similarity=0.696 Sum_probs=45.8
Q ss_pred CCCcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCCccCCccccchhHHHHHhhhcC
Q 016706 240 QAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNC 311 (384)
Q Consensus 240 ~~~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~sptf~~~~hsn~hrkv~~~R~~~~ 311 (384)
.....|.||++++||+||+||+|+ +|||||||+|++ +..+||+.+. +.+|+.|+++.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~---~~~~RP~~~~-----------~~~i~~R~Rk~ 61 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKL---HNINRPLTMK-----------KEGIQTRNRKM 61 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHH---HSSCCCGGGC-----------CSSCCCCC---
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHH---cCCCCCcCcC-----------CCccccccCCC
Confidence 456789999999999999999996 999999999995 4568999876 55666666654
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.64 E-value=7.4e-18 Score=131.56 Aligned_cols=57 Identities=39% Similarity=0.761 Sum_probs=48.1
Q ss_pred CCCcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCCccCCccccchhHHHHHhhhcC
Q 016706 240 QAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNC 311 (384)
Q Consensus 240 ~~~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~sptf~~~~hsn~hrkv~~~R~~~~ 311 (384)
...+.|.||++++||+||+||+|. +|||||||||+ ++...||..++ +.+|+.|+|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~---~~~~~RP~~~k-----------~~~ik~R~R~~ 63 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLK---LHGVVRPLSLK-----------TDVIKKRNRNS 63 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHH---HHCSCCCGGGC-----------CSCCCCCCCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHH---HcCCCCchhhc-----------cccccccccCC
Confidence 456899999999999999999995 99999999999 67778999987 44666666554
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60 E-value=1.2e-16 Score=115.35 Aligned_cols=42 Identities=43% Similarity=0.868 Sum_probs=37.3
Q ss_pred cccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCC
Q 016706 243 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAAS 288 (384)
Q Consensus 243 ~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~s 288 (384)
+.|.+|++++||+||+||+|+ +|||||||||+ ++...||+.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k---~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLK---LHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHH---HHSSCCCCCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHH---HhCCCCCCCC
Confidence 479999999999999999996 99999999999 5666788753
No 4
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.60 E-value=4.3e-17 Score=139.01 Aligned_cols=80 Identities=34% Similarity=0.610 Sum_probs=57.2
Q ss_pred hhhcCCCCCChhhhhccccccCCCCCCCCccCCCCCCCCcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCC
Q 016706 204 LVIKIPKQFNPEHKKKKKIKLSVPKVSDETSEVGPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEY 283 (384)
Q Consensus 204 l~~kmp~~~~~~~KkKKk~k~~~p~~~~~~~~~s~~~~~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~ 283 (384)
++.++.+...+..++|++... .......|.||++++||+||+||+| ++|||||||||+ +|...
T Consensus 34 l~~Kl~G~nRP~~KpKKR~~~-------------~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~---~~~~~ 96 (115)
T 4hc9_A 34 LYHKMNGQNRPLIKPKRRLSA-------------ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK---LHNIN 96 (115)
T ss_dssp HHHHHHSSCCCCSSCCCCCCC-------------CCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSC
T ss_pred hhhhhcccccccccccccccc-------------cccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHH---HhCCC
Confidence 345555555555555544321 1234579999999999999999999 999999999999 66677
Q ss_pred CCCCCCCccCCccccchhHHHHHhhhcC
Q 016706 284 RPAASPTFVPSLHSNSHKKVVEMRNKNC 311 (384)
Q Consensus 284 RP~~sptf~~~~hsn~hrkv~~~R~~~~ 311 (384)
||+.+. +.+|++|+++.
T Consensus 97 rp~~~~-----------~~~i~~r~r~~ 113 (115)
T 4hc9_A 97 RPLTMK-----------KEGIQTRNRKM 113 (115)
T ss_dssp CCGGGC-----------CSSCCCCC---
T ss_pred CCcccc-----------ccchhhccccc
Confidence 999887 45666666654
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59 E-value=3.6e-16 Score=114.25 Aligned_cols=42 Identities=43% Similarity=0.879 Sum_probs=37.5
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAA 287 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~ 287 (384)
.+.|.||++++||+||+||+|+ +|||||||||+ ++...||++
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k---~~~~~RP~~ 45 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLYHK---MNGQNRPLI 45 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHH---HTCSCCCCC
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHH---HcCCCCCCC
Confidence 4689999999999999999995 99999999999 566777764
No 6
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.58 E-value=2.1e-16 Score=124.94 Aligned_cols=46 Identities=26% Similarity=0.544 Sum_probs=38.3
Q ss_pred CCcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCC
Q 016706 241 AVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASP 289 (384)
Q Consensus 241 ~~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~sp 289 (384)
....|.||+|++||+||+|+.+..+|||||||||+ ++..+||+.+.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~---~~~~~RP~~~~ 52 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVTAV 52 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHH---HHHSCCCTHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCCccchHHHHHHH---HhCCCCCcccc
Confidence 45789999999999999954444499999999999 56778999864
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.20 E-value=2.7e-12 Score=109.44 Aligned_cols=45 Identities=42% Similarity=0.858 Sum_probs=38.9
Q ss_pred CCcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCC
Q 016706 241 AVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASP 289 (384)
Q Consensus 241 ~~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~sp 289 (384)
..+.|.||+++.||+||+|+.| .+|||||||||+ +++..||...|
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K---l~G~nRP~~Kp 48 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK---MNGQNRPLIKP 48 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCCSSC
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh---hcccccccccc
Confidence 4578999999999999999999 899999999999 67788887544
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=68.81 E-value=3.6 Score=30.61 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=29.3
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCC--CCCCCCC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRL--FPEYRPA 286 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl--~p~~RP~ 286 (384)
.+.|.+|+.+. .-.....| ...|..||+-+..+.+ -||||--
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCCS
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCccccc
Confidence 45799998754 43444556 7999999999886553 3677754
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.01 E-value=1.9 Score=30.56 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=26.8
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCC--CCCCC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLF--PEYRP 285 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~--p~~RP 285 (384)
...|.+|+.+ ++-.....| ...|..||+-|....+- |+||-
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 3579999773 332222345 79999999988765543 56664
No 10
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=52.81 E-value=8.2 Score=37.34 Aligned_cols=43 Identities=21% Similarity=0.438 Sum_probs=26.9
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCC--CCCCC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLF--PEYRP 285 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~--p~~RP 285 (384)
...|.+|+...+-.=..-..| ..+|..||+-..-..+. ||||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccccccCCccccc
Confidence 357999988642222233456 88999999877644433 56653
No 11
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=51.03 E-value=6.4 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=21.8
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhh
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRY 274 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~y 274 (384)
--.|..|+...|-+=+++..= -.-|+|||-.-
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~ 134 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSW-YIVCLACGAQT 134 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTT-TSSCCC-----
T ss_pred eeECCCCCCcCcEEEEeCCeE-EEEecCCCCCC
Confidence 357999999999999875333 57899999653
No 12
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=47.32 E-value=6.5 Score=34.65 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=24.8
Q ss_pred cccccCCCCCCCCcCCCCCCChhhhhhhhhhhh
Q 016706 243 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRYK 275 (384)
Q Consensus 243 ~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk 275 (384)
-.|..|+...|-+=+++.. --.-|+|||-...
T Consensus 105 VlC~~C~sPdT~L~k~~r~-~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRF-HFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSS-BCCCCSSSCCCCC
T ss_pred EECCCCCCcCcEEEEeCCE-EEEEecCCCCCcc
Confidence 3699999999999886533 2578999996543
No 13
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=46.04 E-value=6.1 Score=29.79 Aligned_cols=19 Identities=42% Similarity=0.948 Sum_probs=16.8
Q ss_pred CCCCCCChhhhhhhhhhhh
Q 016706 257 RAGPMGPKTLCNACGVRYK 275 (384)
Q Consensus 257 R~GP~G~~~LCNACGl~yk 275 (384)
..+|+||++-|.-||+.|.
T Consensus 6 ~~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCCccccccCcccc
Confidence 3578999999999999998
No 14
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=42.38 E-value=5 Score=29.22 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=25.9
Q ss_pred CcccccCCCCC----CCCcCCCCCCCh--hhhhhhhhhhhc
Q 016706 242 VRKCMHCEITK----TPQWRAGPMGPK--TLCNACGVRYKS 276 (384)
Q Consensus 242 ~~~C~~C~tt~----TP~WR~GP~G~~--~LCNACGl~yk~ 276 (384)
...|.+|+-.. +-|||...++.. ..|..||-+|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 45799999854 447888776622 589999988873
No 15
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=40.94 E-value=17 Score=27.68 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=33.0
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCCccCCccccchhHHHHHhhhcC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSLHSNSHKKVVEMRNKNC 311 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~sptf~~~~hsn~hrkv~~~R~~~~ 311 (384)
.+.|..|++.+- +..|-.||.... -+.-+.|.+.---..+|..++.|-...
T Consensus 6 mr~C~~CgvYTL----------k~~CP~CG~~T~---------~~hParfSp~Dky~~yR~~~kk~~~~~ 56 (60)
T 2apo_B 6 MKKCPKCGLYTL----------KEICPKCGEKTV---------IPKPPKFSLEDRWGKYRRMLKRALKNK 56 (60)
T ss_dssp CEECTTTCCEES----------SSBCSSSCSBCB---------CCCCCCCCTTCTTHHHHHHHHHHHHTC
T ss_pred ceeCCCCCCEec----------cccCcCCCCcCC---------CCCCCCCCCCcchHHHHHHHHHHhccc
Confidence 568999987665 456888887655 233356666655556777776665443
No 16
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=40.48 E-value=6.5 Score=34.22 Aligned_cols=31 Identities=29% Similarity=0.606 Sum_probs=24.3
Q ss_pred cccccCCCCCCCCcCCCCCCChhhhhhhhhhh
Q 016706 243 RKCMHCEITKTPQWRAGPMGPKTLCNACGVRY 274 (384)
Q Consensus 243 ~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~y 274 (384)
-.|..|+...|-+=+++..= -.-|+|||-.-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~ 133 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGAKA 133 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSCCC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCCCc
Confidence 46999999999998865332 57899999653
No 17
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=38.72 E-value=8.4 Score=28.92 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCCCccccc--CCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCC
Q 016706 239 TQAVRKCMH--CEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYR 284 (384)
Q Consensus 239 ~~~~~~C~~--C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~R 284 (384)
.....+|.. |++-.-|.++-...|+.-.||-|+.+-. +.++|.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~---~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQ---FPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEE---CCSCCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCC---CCHHHh
Confidence 456789998 9999999998888888899999998776 666665
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=36.88 E-value=2.8 Score=28.56 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=22.3
Q ss_pred ccccCCCCCCCCcCCCCCCChhhhhhhhhhhh
Q 016706 244 KCMHCEITKTPQWRAGPMGPKTLCNACGVRYK 275 (384)
Q Consensus 244 ~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk 275 (384)
.|..|+-.+|-+=+++..- -.-|+|||-...
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCccc
Confidence 4899999999888754221 355999997643
No 19
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.39 E-value=28 Score=30.17 Aligned_cols=50 Identities=18% Similarity=0.487 Sum_probs=37.6
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCCccC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS-GRLFPEYRPAASPTFVP 293 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~-~rl~p~~RP~~sptf~~ 293 (384)
.+.|.+|+.. -|.|=.=..| -.+|-.|.--.+. |.-+...|.++|-+|..
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~ 79 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQWTA 79 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSCCCH
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCCCCH
Confidence 4689999986 5999888889 8999999776665 33335677777765544
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=29.81 E-value=16 Score=33.76 Aligned_cols=46 Identities=20% Similarity=0.502 Sum_probs=33.0
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS-GRLFPEYRPAASP 289 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~-~rl~p~~RP~~sp 289 (384)
...|..|+... |.|-.-..| ..+|-.|.--.+. +.-+...|.+.+=
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~~is~v~sl~lD 88 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSLTLD 88 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTS
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCCCcccccccCcC
Confidence 46899999965 999999999 9999999554443 3223344555544
No 21
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=28.21 E-value=19 Score=31.24 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=36.8
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCCcc
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFV 292 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl~p~~RP~~sptf~ 292 (384)
.+.|.+|+.. -|.|=.=..| -.+|-.|.--.+.=+.|-..|.++|-+|.
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~ld~w~ 73 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISMTTFT 73 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTTCCCC
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCCCCCC
Confidence 4689999975 6999888899 89999998777753335566666665543
No 22
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=26.01 E-value=16 Score=31.43 Aligned_cols=50 Identities=14% Similarity=0.415 Sum_probs=37.0
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCC-CCCCCCCCCCCccC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRL-FPEYRPAASPTFVP 293 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl-~p~~RP~~sptf~~ 293 (384)
.+.|.+|+... |.|=.=..| -.+|-.|.--.+.=+. +...|.+++-++..
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~ 77 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQWTQ 77 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSCCCH
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeeccccCCCH
Confidence 47899999875 999888899 8999999877775333 34566666655443
No 23
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.56 E-value=22 Score=26.72 Aligned_cols=26 Identities=27% Similarity=0.774 Sum_probs=18.8
Q ss_pred CCCcccccCCCCCCCCcCCCCCCChhhhhhhhhhhh
Q 016706 240 QAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYK 275 (384)
Q Consensus 240 ~~~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk 275 (384)
...-.|.+||...- +..+|-.|| +|+
T Consensus 28 p~l~~c~~cG~~~~---------pH~vc~~CG-~Y~ 53 (60)
T 2zjr_Z 28 PNLTECPQCHGKKL---------SHHICPNCG-YYD 53 (60)
T ss_dssp CCCEECTTTCCEEC---------TTBCCTTTC-BSS
T ss_pred CCceECCCCCCEeC---------CceEcCCCC-cCC
Confidence 34568999997643 268999999 444
No 24
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=24.39 E-value=11 Score=34.06 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=23.6
Q ss_pred ccccCCCCCCCCcCC--CCCCChhhhhhhhhhhh
Q 016706 244 KCMHCEITKTPQWRA--GPMGPKTLCNACGVRYK 275 (384)
Q Consensus 244 ~C~~C~tt~TP~WR~--GP~G~~~LCNACGl~yk 275 (384)
.|..|+-..|-+=+. +.. --.-|+|||-..-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~-~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQT-IGNSCKACGYRGM 130 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTE-EEEEETTTCCCCC
T ss_pred ECCCCCCCccEEEEecCCCE-EEEEccccCCccc
Confidence 699999999999883 222 2467999997654
No 25
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=24.36 E-value=23 Score=30.32 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=26.0
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhh
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACG 271 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACG 271 (384)
.+-|..||+..+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 367999999998888788888788999999
No 26
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.21 E-value=28 Score=30.60 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=35.0
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS-GRLFPEYRPAASPT 290 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~-~rl~p~~RP~~spt 290 (384)
.+.|.+|+.. -|.|=.=..| -.+|-.|.-..+. |.-+...|-+++-+
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD~ 76 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELDS 76 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSCC
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccCC
Confidence 4689999975 6999888899 8999999877775 32234566666653
No 27
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=23.10 E-value=25 Score=31.01 Aligned_cols=50 Identities=22% Similarity=0.469 Sum_probs=36.2
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhc-CCCCCCCCCCCCCCccC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKS-GRLFPEYRPAASPTFVP 293 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~-~rl~p~~RP~~sptf~~ 293 (384)
.+.|.+|+... |.|=.=..| -.+|-.|.--.+. |.-+...|.+.+-+|..
T Consensus 38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~W~~ 88 (147)
T 3dwd_A 38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDKWKD 88 (147)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--CCH
T ss_pred CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccCCCH
Confidence 46899999875 999888889 9999999877775 22234567777665543
No 28
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=23.06 E-value=26 Score=30.34 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=37.1
Q ss_pred CcccccCCCCCCCCcCCCCCCChhhhhhhhhhhhcCCC-CCCCCCCCCCCccC
Q 016706 242 VRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRL-FPEYRPAASPTFVP 293 (384)
Q Consensus 242 ~~~C~~C~tt~TP~WR~GP~G~~~LCNACGl~yk~~rl-~p~~RP~~sptf~~ 293 (384)
.+.|.+|+... |.|=.=..| -.+|-.|.--.+.=+. +...|.+++-+|..
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~ 86 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDKFTP 86 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSCCCH
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCcCCH
Confidence 46899999875 999988899 8999999887775332 23566666665543
No 29
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=21.31 E-value=29 Score=30.98 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCCcccccCCCCCCCCc----CCCCCCC--hhhhhhhhhhhh
Q 016706 240 QAVRKCMHCEITKTPQW----RAGPMGP--KTLCNACGVRYK 275 (384)
Q Consensus 240 ~~~~~C~~C~tt~TP~W----R~GP~G~--~~LCNACGl~yk 275 (384)
.....|..|+-...--| |.+.+|- -..|..||-+|+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 34568999997763322 5555552 257999999986
No 30
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.44 E-value=18 Score=32.16 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=23.9
Q ss_pred cccccCCCCCCCCcCC-CCCCChhhhhhhhhhhh
Q 016706 243 RKCMHCEITKTPQWRA-GPMGPKTLCNACGVRYK 275 (384)
Q Consensus 243 ~~C~~C~tt~TP~WR~-GP~G~~~LCNACGl~yk 275 (384)
-.|..|+...|-+=+. ...---.-|+|||-..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 4699999999999862 11122467999997654
Done!