BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016708
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQK++ ++++G W L AK R GK CR RW N+L P++K+ ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I + H +LGNRW+ IA LP RTDN +KN+WN+ +K+++
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 63 PDIKRGKFSLQEEQTIIQLHALLGNR-WSAIATHLPKRTDNEIKNYWNTHLKKRLAK 118
PD+ +G ++ +E+Q +I+L G + W+ IA HL R + + W+ HL + K
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ +++++G W + AK R GK CR RW N+L P++K+ ++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDI-AKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN +KN+WN+ +++++
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 48 RCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKN 106
R C+ RW L P++ +G ++ +E+Q +I+ G RWS IA HL R + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 YWNTHLKKRLAK 118
W+ HL + K
Sbjct: 68 RWHNHLNPEVKK 79
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P++K+ ++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
+E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 64 DIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHL 112
++ +G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQ 73
KGP+T ED + Y++E+G +W + + R K CR RW N+L P + + ++ +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74 EEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLA 117
E++TI + + LG++WS IA +P RTDN IKN WN+ + KR++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSL 72
KK +TPEED+ L + +HG W+ + A R + CR RW NYL P I ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 QEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNT 110
+E+ ++Q G +W+ IA P RTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVT 125
K+ KF+ +E++ + + A G+ W IA P R + ++ W +L ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA--------PSIS 61
Query: 126 HKP---KNDALLSSDGQ 139
H P + DALL Q
Sbjct: 62 HTPWTAEEDALLVQKIQ 78
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQ 73
K +T EED KL + +G W + ++ + R + CR RW NY+ P ++ +S +
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYW 108
E+ + Q +A G +W+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 65 IKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
+K+ ++ +E++ I Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 64 DIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116
++K+ ++ +E++ + Q H LGNRW+ IA LP RTDN IKN+WN+ +++++
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ+L+ ++++G W + AK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPE 52
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHL 112
+G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPE 52
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHL 112
+G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ+++ ++++G W + AK R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.079, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 67 RGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHL 112
+G ++ +E+Q +I+L G RWS IA HL R + + W+ HL
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64
L K WT EED+KL +E++G W+ + A R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64
L K WT EED+KL +E++G W+ + A R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 17 WTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFS 71
W ED+ L A + ++G W + A ++ K C+ RW +L P IK+ ++S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI-ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 17 WTPEEDQKLLAYIEEHGHGSW 37
WT EED+KLL + ++G+GSW
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSW 192
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 17 WTPEEDQKLLAYIEEHGHGSW 37
WT EED+KLL + ++G+GSW
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSW 191
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 69 KFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKP 128
K++++E++ Q A G RW+ I+ + RT ++K+Y + K ++ K G+D T
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKETPNQ 69
Query: 129 K 129
K
Sbjct: 70 K 70
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
K WT EED++L A + + G W+ L A R + C+ RW L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFL-ASHFPNRTDQQCQYRWLRVL 54
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 5 PCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRAL 40
PC K W E+D LL I E+G+GSW +
Sbjct: 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMI 160
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAYIEEHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAI 37
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAYIEEHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAI 40
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 KKGPWTPEEDQKLLAYIEEHGHGSWRAL 40
KK WT EE + + A ++++G G+W A+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAI 37
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 112 LKKRLAKMGIDPVTHKPKNDALLSSDGQNKNSANLSHMAQWESARLEAEARLVRESKLRS 171
+KKRL K G++ VT +AL + ++ +++ A E+ ++A+ LV + R
Sbjct: 217 IKKRLKKKGVEVVT-----NALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR-RP 270
Query: 172 HSFQLGL 178
++ +LGL
Sbjct: 271 NTDELGL 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,102,476
Number of Sequences: 62578
Number of extensions: 354640
Number of successful extensions: 738
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 40
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)