Query 016708
Match_columns 384
No_of_seqs 319 out of 1529
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 1.5E-39 3.2E-44 326.5 15.0 169 1-173 1-169 (459)
2 PLN03212 Transcription repress 100.0 2.3E-38 4.9E-43 298.8 10.9 128 3-130 14-141 (249)
3 KOG0048 Transcription factor, 100.0 1.1E-36 2.4E-41 289.8 11.6 119 10-128 5-123 (238)
4 KOG0049 Transcription factor, 99.8 5.5E-20 1.2E-24 190.9 5.9 110 1-111 347-460 (939)
5 KOG0049 Transcription factor, 99.7 9.3E-19 2E-23 181.9 5.0 147 7-164 246-447 (939)
6 KOG0048 Transcription factor, 99.6 3.6E-17 7.7E-22 156.0 -0.5 103 62-176 4-108 (238)
7 PF13921 Myb_DNA-bind_6: Myb-l 99.6 7.1E-16 1.5E-20 116.4 3.0 60 17-78 1-60 (60)
8 PLN03212 Transcription repress 99.6 3.7E-16 8.1E-21 148.4 1.0 103 62-176 20-124 (249)
9 COG5147 REB1 Myb superfamily p 99.5 7.2E-15 1.6E-19 152.6 6.0 108 9-117 15-122 (512)
10 PLN03091 hypothetical protein; 99.5 2.6E-15 5.6E-20 152.1 -0.2 103 60-174 7-111 (459)
11 KOG0050 mRNA splicing protein 99.5 1.7E-14 3.6E-19 147.6 2.6 107 11-119 4-110 (617)
12 KOG0051 RNA polymerase I termi 99.4 2.8E-13 6E-18 142.2 5.4 104 13-119 383-514 (607)
13 PF00249 Myb_DNA-binding: Myb- 99.3 2E-13 4.3E-18 99.1 0.3 48 14-61 1-48 (48)
14 PF00249 Myb_DNA-binding: Myb- 99.3 2.4E-12 5.3E-17 93.4 4.9 46 67-112 1-48 (48)
15 PF13921 Myb_DNA-bind_6: Myb-l 99.2 6.3E-12 1.4E-16 94.8 4.3 54 70-123 1-54 (60)
16 smart00717 SANT SANT SWI3, AD 99.1 1.3E-10 2.9E-15 81.9 5.5 47 67-113 1-48 (49)
17 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 9.1E-10 2E-14 76.5 5.6 44 69-112 1-45 (45)
18 smart00717 SANT SANT SWI3, AD 98.9 5.2E-10 1.1E-14 78.9 1.7 48 14-62 1-48 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 3.4E-09 7.3E-14 73.6 1.4 45 16-61 1-45 (45)
20 KOG0051 RNA polymerase I termi 98.6 4.1E-08 8.9E-13 103.8 5.4 107 12-122 306-440 (607)
21 COG5147 REB1 Myb superfamily p 98.3 2.7E-08 5.9E-13 104.0 -3.8 98 13-113 290-397 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.6 3.6E-05 7.9E-10 58.4 1.9 49 13-61 2-54 (57)
23 KOG0050 mRNA splicing protein 97.5 7.6E-05 1.6E-09 77.7 3.4 62 65-126 5-67 (617)
24 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00057 1.2E-08 51.9 5.5 46 67-112 3-54 (57)
25 KOG0457 Histone acetyltransfer 97.3 0.00044 9.6E-09 70.9 5.9 48 64-111 69-117 (438)
26 TIGR02894 DNA_bind_RsfA transc 97.2 0.00049 1.1E-08 62.3 4.6 52 66-118 3-61 (161)
27 KOG0457 Histone acetyltransfer 96.9 0.00037 8.1E-09 71.5 1.2 50 11-61 69-118 (438)
28 PF08914 Myb_DNA-bind_2: Rap1 96.7 0.0027 5.8E-08 49.5 4.3 51 67-117 2-62 (65)
29 COG5259 RSC8 RSC chromatin rem 96.6 0.0022 4.7E-08 66.5 4.3 45 67-111 279-323 (531)
30 PF13325 MCRS_N: N-terminal re 96.6 0.0046 9.9E-08 58.1 6.0 100 16-117 1-131 (199)
31 KOG1279 Chromatin remodeling f 96.5 0.0031 6.7E-08 66.7 5.1 46 66-111 252-297 (506)
32 PF13837 Myb_DNA-bind_4: Myb/S 96.5 0.0024 5.1E-08 51.2 3.2 49 67-115 1-67 (90)
33 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.0012 2.7E-08 51.3 -0.3 51 14-64 2-60 (65)
34 COG5259 RSC8 RSC chromatin rem 96.0 0.0025 5.5E-08 66.0 0.9 46 13-60 278-323 (531)
35 PRK13923 putative spore coat p 95.8 0.011 2.5E-07 54.2 4.2 53 65-118 3-62 (170)
36 KOG1279 Chromatin remodeling f 95.6 0.0049 1.1E-07 65.2 1.6 46 12-59 251-296 (506)
37 TIGR02894 DNA_bind_RsfA transc 95.4 0.004 8.6E-08 56.5 -0.2 50 12-63 2-57 (161)
38 PF13873 Myb_DNA-bind_5: Myb/S 95.4 0.033 7.2E-07 43.8 5.1 49 67-115 2-72 (78)
39 PF13837 Myb_DNA-bind_4: Myb/S 95.2 0.0043 9.3E-08 49.7 -0.6 46 15-60 2-63 (90)
40 COG5114 Histone acetyltransfer 94.9 0.026 5.7E-07 56.3 3.8 46 66-111 62-108 (432)
41 PF13873 Myb_DNA-bind_5: Myb/S 93.6 0.014 3.1E-07 45.9 -0.8 49 13-61 1-69 (78)
42 PLN03142 Probable chromatin-re 93.1 0.24 5.2E-06 57.0 7.6 102 16-118 826-990 (1033)
43 KOG1194 Predicted DNA-binding 91.6 0.53 1.1E-05 49.2 7.2 49 67-115 187-235 (534)
44 PF09111 SLIDE: SLIDE; InterP 91.6 0.29 6.2E-06 42.5 4.6 53 64-116 46-114 (118)
45 PRK13923 putative spore coat p 91.5 0.039 8.5E-07 50.7 -0.9 51 12-62 3-57 (170)
46 COG5114 Histone acetyltransfer 91.0 0.065 1.4E-06 53.6 -0.1 50 12-62 61-110 (432)
47 KOG2656 DNA methyltransferase 90.9 0.26 5.6E-06 50.5 4.1 84 36-120 75-189 (445)
48 PF12776 Myb_DNA-bind_3: Myb/S 89.9 0.76 1.6E-05 37.1 5.4 46 69-114 1-64 (96)
49 KOG4282 Transcription factor G 89.5 0.51 1.1E-05 47.4 4.9 51 67-117 54-118 (345)
50 COG5118 BDP1 Transcription ini 87.4 0.61 1.3E-05 47.8 3.8 48 68-115 366-413 (507)
51 KOG4167 Predicted DNA-binding 79.4 3.6 7.9E-05 45.5 5.8 68 40-111 593-663 (907)
52 PF08281 Sigma70_r4_2: Sigma-7 79.4 4.4 9.5E-05 29.2 4.6 41 72-113 12-52 (54)
53 COG5118 BDP1 Transcription ini 75.9 1.3 2.8E-05 45.5 1.2 46 13-60 364-409 (507)
54 PF09111 SLIDE: SLIDE; InterP 75.5 2.1 4.5E-05 37.2 2.2 34 11-44 46-82 (118)
55 PF11626 Rap1_C: TRF2-interact 75.0 2.8 6E-05 34.1 2.8 25 10-34 43-75 (87)
56 KOG4282 Transcription factor G 70.3 1.4 3E-05 44.3 -0.1 47 15-61 55-113 (345)
57 KOG4167 Predicted DNA-binding 64.0 7 0.00015 43.4 3.6 44 14-59 619-662 (907)
58 PF11035 SnAPC_2_like: Small n 60.9 29 0.00063 35.1 7.1 51 67-118 21-75 (344)
59 KOG4468 Polycomb-group transcr 59.0 16 0.00035 39.8 5.2 53 67-119 88-150 (782)
60 KOG0384 Chromodomain-helicase 59.0 8.3 0.00018 45.2 3.3 71 13-91 1132-1204(1373)
61 PF12776 Myb_DNA-bind_3: Myb/S 56.5 4.5 9.8E-05 32.5 0.6 43 16-58 1-59 (96)
62 PF13325 MCRS_N: N-terminal re 55.6 22 0.00049 33.6 5.1 45 69-114 1-48 (199)
63 PF04545 Sigma70_r4: Sigma-70, 52.6 30 0.00065 24.5 4.3 41 73-114 7-47 (50)
64 PF07750 GcrA: GcrA cell cycle 50.0 17 0.00037 33.1 3.3 40 69-109 2-41 (162)
65 PF11626 Rap1_C: TRF2-interact 49.1 7.6 0.00017 31.5 0.8 17 63-79 43-59 (87)
66 smart00595 MADF subfamily of S 48.7 20 0.00044 28.3 3.2 24 89-113 30-53 (89)
67 PF13404 HTH_AsnC-type: AsnC-t 48.0 34 0.00073 24.1 3.8 38 73-111 3-41 (42)
68 PF01388 ARID: ARID/BRIGHT DNA 47.2 41 0.00088 26.9 4.8 38 77-114 40-90 (92)
69 PRK11179 DNA-binding transcrip 46.7 37 0.0008 30.0 4.9 42 73-115 9-51 (153)
70 KOG4329 DNA-binding protein [G 43.9 39 0.00085 35.0 5.0 44 68-111 278-322 (445)
71 TIGR02985 Sig70_bacteroi1 RNA 43.3 53 0.0011 27.9 5.2 40 74-114 117-156 (161)
72 KOG2009 Transcription initiati 42.2 25 0.00055 38.3 3.6 51 65-115 407-457 (584)
73 smart00501 BRIGHT BRIGHT, ARID 40.7 54 0.0012 26.5 4.6 39 77-115 36-87 (93)
74 cd08319 Death_RAIDD Death doma 38.2 40 0.00086 27.4 3.4 29 75-104 2-30 (83)
75 PF09420 Nop16: Ribosome bioge 38.1 80 0.0017 28.5 5.7 47 66-112 113-163 (164)
76 KOG3841 TEF-1 and related tran 37.8 63 0.0014 33.6 5.4 55 65-119 74-149 (455)
77 PRK11169 leucine-responsive tr 37.3 50 0.0011 29.6 4.3 44 72-116 13-57 (164)
78 cd08803 Death_ank3 Death domai 34.4 54 0.0012 26.6 3.6 30 75-105 4-33 (84)
79 KOG4468 Polycomb-group transcr 33.8 33 0.00071 37.6 2.8 48 14-62 88-144 (782)
80 PRK11179 DNA-binding transcrip 33.6 14 0.00031 32.7 0.1 46 19-66 8-53 (153)
81 TIGR02937 sigma70-ECF RNA poly 33.4 84 0.0018 25.8 4.8 37 77-114 117-153 (158)
82 PRK09645 RNA polymerase sigma 32.9 93 0.002 27.3 5.2 30 83-113 131-160 (173)
83 PRK12532 RNA polymerase sigma 32.1 1E+02 0.0022 27.8 5.4 39 83-122 149-190 (195)
84 PRK11169 leucine-responsive tr 32.0 12 0.00027 33.5 -0.6 45 19-65 13-57 (164)
85 PF07638 Sigma70_ECF: ECF sigm 31.1 1E+02 0.0022 27.9 5.3 39 74-113 139-177 (185)
86 PF10545 MADF_DNA_bdg: Alcohol 30.7 54 0.0012 25.0 3.0 26 89-114 29-55 (85)
87 PRK09047 RNA polymerase factor 30.3 1.3E+02 0.0028 25.8 5.6 31 83-114 119-149 (161)
88 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 29.2 80 0.0017 23.4 3.4 35 73-108 7-41 (50)
89 cd06171 Sigma70_r4 Sigma70, re 27.4 1.3E+02 0.0029 20.0 4.3 37 74-111 14-50 (55)
90 PRK09652 RNA polymerase sigma 26.8 1.4E+02 0.0031 25.8 5.3 33 81-114 139-171 (182)
91 cd08317 Death_ank Death domain 26.6 64 0.0014 25.7 2.8 29 75-104 4-32 (84)
92 PRK12523 RNA polymerase sigma 26.3 1.5E+02 0.0033 26.0 5.5 42 78-120 127-168 (172)
93 PRK12512 RNA polymerase sigma 26.0 1.5E+02 0.0032 26.3 5.3 34 84-118 145-178 (184)
94 PRK09642 RNA polymerase sigma 25.8 1.5E+02 0.0032 25.6 5.2 29 84-113 120-148 (160)
95 PRK12529 RNA polymerase sigma 25.5 1.7E+02 0.0036 26.1 5.6 37 82-119 139-175 (178)
96 KOG2656 DNA methyltransferase 25.4 31 0.00068 35.9 0.9 50 11-61 127-181 (445)
97 PRK11924 RNA polymerase sigma 25.2 1.1E+02 0.0024 26.4 4.3 29 84-113 139-167 (179)
98 PRK09643 RNA polymerase sigma 24.5 1.5E+02 0.0031 26.9 5.1 30 83-113 147-176 (192)
99 cd08804 Death_ank2 Death domai 24.4 87 0.0019 25.3 3.2 31 75-106 4-34 (84)
100 PRK04217 hypothetical protein; 24.1 2E+02 0.0043 24.7 5.4 46 68-115 41-86 (110)
101 PRK12530 RNA polymerase sigma 23.1 1.5E+02 0.0032 26.7 4.8 28 84-112 148-175 (189)
102 cd08318 Death_NMPP84 Death dom 23.0 99 0.0021 25.0 3.3 26 78-104 10-35 (86)
103 PF09420 Nop16: Ribosome bioge 22.8 47 0.001 30.1 1.4 45 12-57 112-159 (164)
104 PF04504 DUF573: Protein of un 22.7 1.3E+02 0.0028 25.0 4.0 49 68-116 5-66 (98)
105 cd08311 Death_p75NR Death doma 22.1 84 0.0018 25.1 2.6 33 72-106 2-34 (77)
106 smart00344 HTH_ASNC helix_turn 22.0 1.8E+02 0.004 23.5 4.8 43 73-116 3-46 (108)
107 KOG1194 Predicted DNA-binding 21.9 46 0.00099 35.4 1.3 46 12-59 185-230 (534)
108 cd08777 Death_RIP1 Death Domai 21.8 94 0.002 25.3 2.9 30 76-106 3-32 (86)
109 KOG4329 DNA-binding protein [G 21.6 49 0.0011 34.3 1.4 43 15-58 278-320 (445)
110 PRK12515 RNA polymerase sigma 21.5 1.9E+02 0.0041 25.9 5.1 30 84-114 145-174 (189)
111 TIGR02954 Sig70_famx3 RNA poly 21.3 1.8E+02 0.0039 25.3 4.9 31 84-115 133-163 (169)
112 TIGR02939 RpoE_Sigma70 RNA pol 20.6 1.5E+02 0.0032 26.2 4.2 30 85-115 153-182 (190)
113 PRK09641 RNA polymerase sigma 20.5 1.8E+02 0.0038 25.6 4.7 29 85-114 151-179 (187)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=326.50 Aligned_cols=169 Identities=54% Similarity=0.967 Sum_probs=150.3
Q ss_pred CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHH
Q 016708 1 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQ 80 (384)
Q Consensus 1 mgr~~c~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~ 80 (384)
|||++||+|..+||++||+|||++|+++|++||.++|..||..++++|+++|||+||.+||+|.+++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCCCccccccccccccchhhhhHH
Q 016708 81 LHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQNKNSANLSHMAQWESARLEAE 160 (384)
Q Consensus 81 lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k~~~~ls~~aqwesar~e~e 160 (384)
++++||++|.+||++|||||+++||+||+.+|++++++.++++.++++........+ .......++++.+++++.|
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d----~~p~~~~~~~~~s~~~~~e 156 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGED----KNPPTDDKSDKASSVVSNE 156 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccc----cCCccccccccchhhhhhh
Confidence 999999999999999999999999999999999999999999999998875432222 1234456677888888888
Q ss_pred HHHHHHhhccccc
Q 016708 161 ARLVRESKLRSHS 173 (384)
Q Consensus 161 ~R~~re~k~~~~s 173 (384)
..+..+--+...+
T Consensus 157 l~~~~~~~~~~~~ 169 (459)
T PLN03091 157 LNLLKADNSKPLA 169 (459)
T ss_pred hhhhhhhccCccc
Confidence 8877665544443
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=2.3e-38 Score=298.80 Aligned_cols=128 Identities=63% Similarity=1.257 Sum_probs=123.8
Q ss_pred CCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHH
Q 016708 3 RSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLH 82 (384)
Q Consensus 3 r~~c~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv 82 (384)
|+|||+|+++||++||+|||++|+++|++||..+|..||.+++++|+++|||+||.+||+|.+++++||+|||++|++++
T Consensus 14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~ 93 (249)
T PLN03212 14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH 93 (249)
T ss_pred CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence 68999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred HHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCC
Q 016708 83 ALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKN 130 (384)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~ 130 (384)
.+||++|..||++|||||+++|||||+.++++++.+.+++|.++++..
T Consensus 94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~ 141 (249)
T PLN03212 94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141 (249)
T ss_pred HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999998887754
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=1.1e-36 Score=289.81 Aligned_cols=119 Identities=68% Similarity=1.133 Sum_probs=112.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 016708 10 VGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRW 89 (384)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW 89 (384)
+.+.||+||+|||++|++||++||+++|..||..++++||+|+||+||.|||+|+||+|.||+|||++|++||++||++|
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW 84 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW 84 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCC
Q 016708 90 SAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKP 128 (384)
Q Consensus 90 ~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~ 128 (384)
+.||++|||||+++|||+|+++|++++.++++++.+..+
T Consensus 85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~ 123 (238)
T KOG0048|consen 85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRP 123 (238)
T ss_pred HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence 999999999999999999999999999998866555433
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.79 E-value=5.5e-20 Score=190.89 Aligned_cols=110 Identities=25% Similarity=0.446 Sum_probs=101.1
Q ss_pred CCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHH
Q 016708 1 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQ 80 (384)
Q Consensus 1 mgr~~c~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~ 80 (384)
+||......|++|+|+||++||.+|+.+|.+||.++|.+| ....|+|+..|||+||.|.|+...|.+.||..||+.||.
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~-R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~ 425 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKV-RQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY 425 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhH-HHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence 5788889999999999999999999999999999999999 667779999999999999999999999999999999999
Q ss_pred HHHHhC-CChhhhhhcCCCCCHHH---HHHHHHHH
Q 016708 81 LHALLG-NRWSAIATHLPKRTDNE---IKNYWNTH 111 (384)
Q Consensus 81 lv~~~G-~kW~~IA~~lpgRT~~q---cKnRW~~~ 111 (384)
+|++|| +.|.+||.+||+||.+| ||.|+..+
T Consensus 426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HHHHHccchHHHHHHHccccchhHHHHHHHHHHHH
Confidence 999999 78999999999999955 45554433
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.74 E-value=9.3e-19 Score=181.87 Aligned_cols=147 Identities=20% Similarity=0.344 Sum_probs=124.9
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccc--------------------------------
Q 016708 7 CDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCR-------------------------------- 54 (384)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr-------------------------------- 54 (384)
...|.++|..|++|||++|+++...+++.+|..||+.++.+|+..||.
T Consensus 246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~ 325 (939)
T KOG0049|consen 246 ELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI 325 (939)
T ss_pred hcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence 346999999999999999999999999999999999999889999997
Q ss_pred ----------------------cccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 55 ----------------------LRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGN-RWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 55 ----------------------~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
.||...|+|.+++|+||.+||.+|+.+|++||. .|.+|-..+|+|++.|||.||.+.
T Consensus 326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence 688888999999999999999999999999995 599999999999999999999999
Q ss_pred hHHHHhhcCCCCCCCCCCCcccccCCCCCccccccccccccchhhhhHHHHHH
Q 016708 112 LKKRLAKMGIDPVTHKPKNDALLSSDGQNKNSANLSHMAQWESARLEAEARLV 164 (384)
Q Consensus 112 Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k~~~~ls~~aqwesar~e~e~R~~ 164 (384)
|...+++..|+..+..-...++...+ ..+|..++.++.-|+.
T Consensus 406 L~~s~K~~rW~l~edeqL~~~V~~YG-----------~g~WakcA~~Lp~~t~ 447 (939)
T KOG0049|consen 406 LNRSAKVERWTLVEDEQLLYAVKVYG-----------KGNWAKCAMLLPKKTS 447 (939)
T ss_pred HHHhhccCceeecchHHHHHHHHHHc-----------cchHHHHHHHccccch
Confidence 99999999998665443333222221 2457777666665555
No 6
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.62 E-value=3.6e-17 Score=156.04 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC-CCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCC
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLP-KRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQ 139 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~ 139 (384)
++.+.+|+||+|||++|+++|++|| .+|..||+.++ +|+.++||.||.++|++.++++.|++++...+..+....+
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-- 81 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG-- 81 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC--
Confidence 3445689999999999999999999 66999999999 9999999999999999999999999887765554443333
Q ss_pred CccccccccccccchhhhhHHHHHHHHhhcccccccc
Q 016708 140 NKNSANLSHMAQWESARLEAEARLVRESKLRSHSFQL 176 (384)
Q Consensus 140 ~k~~~~ls~~aqwesar~e~e~R~~re~k~~~~s~~~ 176 (384)
..|..|+..+++|+++++|++|+++..
T Consensus 82 ----------NrWs~IA~~LPGRTDNeIKN~Wnt~lk 108 (238)
T KOG0048|consen 82 ----------NRWSLIAGRLPGRTDNEVKNHWNTHLK 108 (238)
T ss_pred ----------cHHHHHHhhCCCcCHHHHHHHHHHHHH
Confidence 569999999999999999999998643
No 7
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.58 E-value=7.1e-16 Score=116.45 Aligned_cols=60 Identities=42% Similarity=0.889 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHH
Q 016708 17 WTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTI 78 (384)
Q Consensus 17 WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~L 78 (384)
||+|||++|+++|.+|| .+|..||..++ .|++.||+.||.++|+|.+++++||.+||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 49999977764 79999999999999999999999999999987
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.57 E-value=3.7e-16 Score=148.36 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=87.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcC-CCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCC
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHL-PKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQ 139 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l-pgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~ 139 (384)
++.+++++||+|||++|+++|++|| .+|..||+.+ ++||.+|||.||.++|++.+++..|+.++...+...+.
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~----- 94 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR----- 94 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHH-----
Confidence 4678999999999999999999999 6899999998 59999999999999999999999999776543322211
Q ss_pred CccccccccccccchhhhhHHHHHHHHhhcccccccc
Q 016708 140 NKNSANLSHMAQWESARLEAEARLVRESKLRSHSFQL 176 (384)
Q Consensus 140 ~k~~~~ls~~aqwesar~e~e~R~~re~k~~~~s~~~ 176 (384)
....+|..|+..+++|++.++|+||+++..
T Consensus 95 -------~~GnKWs~IAk~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 95 -------LLGNRWSLIAGRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred -------hccccHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 123579999999999999999999997544
No 9
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.53 E-value=7.2e-15 Score=152.61 Aligned_cols=108 Identities=28% Similarity=0.522 Sum_probs=102.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNR 88 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~k 88 (384)
...++.|.|+..||+.|+.+|++||+.+|..||+++. -|+++||+.||.++++|.+++..|+.|||..|+.+..++|.+
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence 3567899999999999999999999999999988777 499999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHhHHHHh
Q 016708 89 WSAIATHLPKRTDNEIKNYWNTHLKKRLA 117 (384)
Q Consensus 89 W~~IA~~lpgRT~~qcKnRW~~~Lkk~l~ 117 (384)
|..||..+++||..+|.+||...+.....
T Consensus 94 wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 94 WSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 99999999999999999999998887776
No 10
>PLN03091 hypothetical protein; Provisional
Probab=99.50 E-value=2.6e-15 Score=152.12 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=87.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC-CCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCC
Q 016708 60 YLRPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLP-KRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSD 137 (384)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~ 137 (384)
..++.+++++||+|||++|+++|++|| .+|..||+.++ +|+.+|||.||.++|++.+++..|++++...+...+..
T Consensus 7 c~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~-- 84 (459)
T PLN03091 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAV-- 84 (459)
T ss_pred CcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHH--
Confidence 345678999999999999999999999 57999999985 89999999999999999999999998776544332222
Q ss_pred CCCccccccccccccchhhhhHHHHHHHHhhcccccc
Q 016708 138 GQNKNSANLSHMAQWESARLEAEARLVRESKLRSHSF 174 (384)
Q Consensus 138 ~~~k~~~~ls~~aqwesar~e~e~R~~re~k~~~~s~ 174 (384)
...+|..|+..+++|++.++|+||++.
T Consensus 85 ----------~GnKWskIAk~LPGRTDnqIKNRWnsl 111 (459)
T PLN03091 85 ----------LGNRWSQIAAQLPGRTDNEIKNLWNSC 111 (459)
T ss_pred ----------hCcchHHHHHhcCCCCHHHHHHHHHHH
Confidence 225799999999999999999999973
No 11
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.7e-14 Score=147.63 Aligned_cols=107 Identities=25% Similarity=0.536 Sum_probs=99.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWS 90 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~ 90 (384)
-+|.|-|+.-||+.|..+|.+||.+.|++|+. +...++++||+.||..+|+|.|++..|+.|||++||.+...+...|.
T Consensus 4 ~~kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr 82 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR 82 (617)
T ss_pred EEecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence 36789999999999999999999999999954 45488999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHhHHHHhhc
Q 016708 91 AIATHLPKRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 91 ~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
.||..| ||+.+||-.||+.++-......
T Consensus 83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~ 110 (617)
T KOG0050|consen 83 TIADIM-GRTSQQCLERYNNLLDVYVSYH 110 (617)
T ss_pred hHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence 999999 9999999999999998877654
No 12
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.38 E-value=2.8e-13 Score=142.25 Aligned_cols=104 Identities=27% Similarity=0.594 Sum_probs=93.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD--IKRGKFSLQEEQTIIQLHA------- 83 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~--ikrg~WT~EED~~Ll~lv~------- 83 (384)
++|.||+||++.|..+|.++| ++|.+|+..++ |.+..||+||.+|..++ .+++.||.||+++|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 59999977666 99999999999999988 4899999999999999995
Q ss_pred HhC-------------------CChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhc
Q 016708 84 LLG-------------------NRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 84 ~~G-------------------~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
++. =.|..|++.++.|+..|||.+|+.++.......
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~ 514 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK 514 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence 331 149999999999999999999999988877654
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.33 E-value=2e-13 Score=99.14 Aligned_cols=48 Identities=40% Similarity=0.834 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccccc
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
|++||+|||++|+++|.+||.++|..||..++.+|++.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998669999877777999999999999875
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.31 E-value=2.4e-12 Score=93.39 Aligned_cols=46 Identities=24% Similarity=0.575 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-hhhhhhcCC-CCCHHHHHHHHHHHh
Q 016708 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~k-W~~IA~~lp-gRT~~qcKnRW~~~L 112 (384)
|++||+|||++|++++.+||.. |..||..|| +||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999999875
No 15
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.24 E-value=6.3e-12 Score=94.80 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCC
Q 016708 70 FSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDP 123 (384)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p 123 (384)
||.|||++|++++.+||++|..||.+|+.||..+|++||+.+|++.+.+..|++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~ 54 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTK 54 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCH
Confidence 999999999999999999999999999779999999999998877766665553
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.11 E-value=1.3e-10 Score=81.89 Aligned_cols=47 Identities=36% Similarity=0.747 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 67 RGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
+++||++||.+|+.++.+|| .+|..||..|++||..+|+.||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.98 E-value=9.1e-10 Score=76.51 Aligned_cols=44 Identities=27% Similarity=0.611 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHh
Q 016708 69 KFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHL 112 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~L 112 (384)
+||.+||.+|++++.+|| .+|..||+.+++||..+|++||+.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 99999999999999999999998763
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.90 E-value=5.2e-10 Score=78.85 Aligned_cols=48 Identities=35% Similarity=0.828 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccC
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
+++||++||++|+.++.+||..+|..||..++ +|++.+|+.||.++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 47899999999999999999669999966665 9999999999998765
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.74 E-value=3.4e-09 Score=73.62 Aligned_cols=45 Identities=40% Similarity=0.838 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccccc
Q 016708 16 PWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 16 ~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
+||+|||++|+.++.+||..+|..||..++ +|++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence 599999999999999999779999976665 799999999998753
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.60 E-value=4.1e-08 Score=103.81 Aligned_cols=107 Identities=24% Similarity=0.308 Sum_probs=83.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCC---------------C--------cccccccccCccCcccccc---ccccccCCCC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHG---------------S--------WRALPAKAGLQRCGKSCRL---RWTNYLRPDI 65 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~---------------~--------W~~Iaa~~~~~Rt~kqCr~---Rw~n~L~p~i 65 (384)
++-+.|+.|||+.|...|..|-.. . |..| ..+++-|+.+++.. |=++.+.+
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~-~~~Lp~R~~~siy~~~rR~y~~FE~-- 382 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNL-YKLLPYRDRKSIYHHLRRAYTPFEN-- 382 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhh-hhhcCcccchhHHHHHHhcCCcccc--
Confidence 344899999999999999988210 2 4555 34445698888876 33334444
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHH--hhcCCC
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRL--AKMGID 122 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l--~k~~~~ 122 (384)
++|.||+||++.|..+|.++|+.|..|++.| ||.+..|+.||..+.+..- .+..|+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws 440 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWS 440 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcch
Confidence 9999999999999999999999999999999 9999999999988876552 444444
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.34 E-value=2.7e-08 Score=104.03 Aligned_cols=98 Identities=29% Similarity=0.630 Sum_probs=83.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCC--CCCCCCCCHHHHHHHHHHHHHhC----
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRP--DIKRGKFSLQEEQTIIQLHALLG---- 86 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p--~ikrg~WT~EED~~Ll~lv~~~G---- 86 (384)
.+|.||+||++.|...+.++| +.|..|...+ +|-+..||+||.+|..+ .+++++|+.||+.+|...+...-
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~--~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~ 366 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLL--GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ 366 (512)
T ss_pred hhccCcccccccccccccccc-chhhHhhhhh--ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence 479999999999999999999 5999995444 59999999999999998 68889999999999998886321
Q ss_pred ----CChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 87 ----NRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 87 ----~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
-.|..|+.++++|....|+.++.....
T Consensus 367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 397 (512)
T COG5147 367 QSSRILWLLIAQNIRNRLQHHCRDKYGVLIS 397 (512)
T ss_pred hhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence 249999999999999888877655433
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.57 E-value=3.6e-05 Score=58.36 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=42.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCc---ccccccccCcc-Ccccccccccccc
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSW---RALPAKAGLQR-CGKSCRLRWTNYL 61 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W---~~Iaa~~~~~R-t~kqCr~Rw~n~L 61 (384)
++-.||+||.++++.+|+.+|.++| ..|+..|...| +..||+.+++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999998899 99988787666 9999999887764
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=7.6e-05 Score=77.75 Aligned_cols=62 Identities=26% Similarity=0.422 Sum_probs=57.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCC
Q 016708 65 IKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTH 126 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~ 126 (384)
++.|-|+.-||+.|-..+.+|| +.|+.|+..++..+..||++||+..+.+.+++-.|.....
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eed 67 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREED 67 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHH
Confidence 5778999999999999999999 7799999999999999999999999999999988875443
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.30 E-value=0.00057 Score=51.85 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-Ch---hhhhhcCC-CC-CHHHHHHHHHHHh
Q 016708 67 RGKFSLQEEQTIIQLHALLGN-RW---SAIATHLP-KR-TDNEIKNYWNTHL 112 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~-kW---~~IA~~lp-gR-T~~qcKnRW~~~L 112 (384)
+-.||+||.++.+++++.+|. +| ..|++.|. .| |..||+.+.+.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 557999999999999999995 99 99999885 45 9999999987664
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.26 E-value=0.00044 Score=70.94 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 64 DIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
.+-...||.+|+.+||+++..|| ++|..||.+++.|+..+||.+|..+
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHH
Confidence 34556899999999999999999 9999999999999999999999654
No 26
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.17 E-value=0.00049 Score=62.31 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CC----ChhhhhhcCCCCCHHHHHHHHHHHhHHHHhh
Q 016708 66 KRGKFSLQEEQTIIQLHALL---GN----RWSAIATHLPKRTDNEIKNYWNTHLKKRLAK 118 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~---G~----kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k 118 (384)
+...||.|||.+|.+.|.+| |. -...++..| +||..+|.-|||..+|++...
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 45789999999999999888 32 288888998 999999999999999988754
No 27
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.86 E-value=0.00037 Score=71.46 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=45.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccccc
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
.+-..-||.+|+-+|+++++.||-|||..||..++ .|+..+|+++|.+++
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 45577899999999999999999999999999999 999999999999864
No 28
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.65 E-value=0.0027 Score=49.46 Aligned_cols=51 Identities=18% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------CC-hhhhhhcCC-CCCHHHHHHHHHHHhHHHHh
Q 016708 67 RGKFSLQEEQTIIQLHALLG--------NR-WSAIATHLP-KRTDNEIKNYWNTHLKKRLA 117 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G--------~k-W~~IA~~lp-gRT~~qcKnRW~~~Lkk~l~ 117 (384)
|-+||.|||+.|++.|..+. ++ |..+++..+ .+|-...|+||...|+.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence 45899999999999996652 22 999999988 89999999999888887654
No 29
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.58 E-value=0.0022 Score=66.53 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
...||.+|..+|++.++.||..|.+||.+++.||..||-.||-++
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 348999999999999999999999999999999999999999654
No 30
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.56 E-value=0.0046 Score=58.12 Aligned_cols=100 Identities=21% Similarity=0.360 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccc--cCccCccccccccccccC-CCC--------------------CCCCCCH
Q 016708 16 PWTPEEDQKLLAYIEEHGHGSWRALPAKA--GLQRCGKSCRLRWTNYLR-PDI--------------------KRGKFSL 72 (384)
Q Consensus 16 ~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~--~~~Rt~kqCr~Rw~n~L~-p~i--------------------krg~WT~ 72 (384)
+|++++|-+|+.+|..-. +-+.|+.-+ -..-|-+.+.+||+..|. |.+ .+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998754 444443221 122345566789987653 322 3568999
Q ss_pred HHHHHHHHHHHHhCC---Chhhhhh-----cCCCCCHHHHHHHHHHHhHHHHh
Q 016708 73 QEEQTIIQLHALLGN---RWSAIAT-----HLPKRTDNEIKNYWNTHLKKRLA 117 (384)
Q Consensus 73 EED~~Ll~lv~~~G~---kW~~IA~-----~lpgRT~~qcKnRW~~~Lkk~l~ 117 (384)
+||++|......... .+.+|=. +-+.||++++..+|..+.+..+-
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL 131 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL 131 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence 999999997655432 3555532 34689999999999876655544
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.52 E-value=0.0031 Score=66.68 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
.+..||.+|..+|++.++.||.+|.+||.+++.||..||-.++..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999999998654
No 32
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.49 E-value=0.0024 Score=51.24 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------ChhhhhhcCC----CCCHHHHHHHHHHHhHHH
Q 016708 67 RGKFSLQEEQTIIQLHAL------LG--N------RWSAIATHLP----KRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~------~G--~------kW~~IA~~lp----gRT~~qcKnRW~~~Lkk~ 115 (384)
|..||.+|...||+++.. ++ . -|..||..|. .||..||+.+|.++.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 347999999999999876 21 1 3999998873 599999999999865443
No 33
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.13 E-value=0.0012 Score=51.33 Aligned_cols=51 Identities=31% Similarity=0.527 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--------CCcccccccccCccCccccccccccccCCC
Q 016708 14 KGPWTPEEDQKLLAYIEEHGH--------GSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~--------~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ 64 (384)
+-+||.|||++|+.+|.++.. .=|.+++......++-.+-|+||...|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 458999999999999977632 139999776666888899999999988764
No 34
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.96 E-value=0.0025 Score=66.04 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=42.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccc
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~ 60 (384)
....||.+|-.+|++.|+.||. +|.+||..++ .|+..||..|+.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 5679999999999999999995 9999988888 99999999999764
No 35
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.78 E-value=0.011 Score=54.18 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC-------hhhhhhcCCCCCHHHHHHHHHHHhHHHHhh
Q 016708 65 IKRGKFSLQEEQTIIQLHALLGNR-------WSAIATHLPKRTDNEIKNYWNTHLKKRLAK 118 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~k-------W~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k 118 (384)
.+...||.|||.+|.+.|..|+.. ...++..| +||..+|..|||..++++...
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence 356789999999999888888632 56666777 899999999999999988765
No 36
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.65 E-value=0.0049 Score=65.22 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=41.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccc
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTN 59 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n 59 (384)
--+..||.+|+.+|+++|+.||. +|.+|+..++ .|+..||..++.+
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLR 296 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHh
Confidence 34788999999999999999996 9999988888 9999999999865
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.39 E-value=0.004 Score=56.53 Aligned_cols=50 Identities=28% Similarity=0.611 Sum_probs=40.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC-C-----CcccccccccCccCccccccccccccCC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGH-G-----SWRALPAKAGLQRCGKSCRLRWTNYLRP 63 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~-~-----~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p 63 (384)
.|+-.||.|||.+|...|-+|-. | ....|+.++. ||+..|.-||..+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence 46788999999999999999821 1 3666655555 9999999999999874
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.36 E-value=0.033 Score=43.80 Aligned_cols=49 Identities=29% Similarity=0.496 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC----C-------------ChhhhhhcC-----CCCCHHHHHHHHHHHhHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLG----N-------------RWSAIATHL-----PKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----~-------------kW~~IA~~l-----pgRT~~qcKnRW~~~Lkk~ 115 (384)
...||.+|...|++++.+|. + -|..|+..| +.||..+||.+|..+....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999998873 1 299999866 2599999999999876543
No 39
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.16 E-value=0.0043 Score=49.72 Aligned_cols=46 Identities=28% Similarity=0.661 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHH--h----C--CC-----Ccccccccc---cCccCccccccccccc
Q 016708 15 GPWTPEEDQKLLAYIEE--H----G--HG-----SWRALPAKA---GLQRCGKSCRLRWTNY 60 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~--y----G--~~-----~W~~Iaa~~---~~~Rt~kqCr~Rw~n~ 60 (384)
-.||.+|...|+.++.. + + .. -|..||..| |..|++.||+.||.+.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999988 2 1 11 499998875 5689999999999874
No 40
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.87 E-value=0.026 Score=56.31 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 66 KRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
--..|+..|+.+||+....+| ++|..||.+++.|+..+||.+|..+
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~ 108 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKM 108 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344799999999999999999 8999999999999999999998654
No 41
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.59 E-value=0.014 Score=45.90 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=39.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----------------CCccccccccc----CccCcccccccccccc
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGH----------------GSWRALPAKAG----LQRCGKSCRLRWTNYL 61 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~----------------~~W~~Iaa~~~----~~Rt~kqCr~Rw~n~L 61 (384)
++..||++|.+.|+++|.+|.. ..|..|+..+. ..|+..||+.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999821 14999987652 3799999999998754
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.12 E-value=0.24 Score=56.98 Aligned_cols=102 Identities=12% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccc-----------------------------------------
Q 016708 16 PWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCR----------------------------------------- 54 (384)
Q Consensus 16 ~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr----------------------------------------- 54 (384)
.|+.-+=..++.+..+||..+-..||..+. +++...++
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888888999888888876664 45554443
Q ss_pred -------cccccc-c-CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhh------------cCCCCCHHHHHHHHHHHh
Q 016708 55 -------LRWTNY-L-RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIAT------------HLPKRTDNEIKNYWNTHL 112 (384)
Q Consensus 55 -------~Rw~n~-L-~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~------------~lpgRT~~qcKnRW~~~L 112 (384)
.-|... + .+..++..+|.|||+.|+-.+.+|| .+|..|-. ++..||+.+|..|.++++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 222110 0 1233455699999999999999999 77999843 335799999999999998
Q ss_pred HHHHhh
Q 016708 113 KKRLAK 118 (384)
Q Consensus 113 kk~l~k 118 (384)
+-..+.
T Consensus 985 ~~~~~e 990 (1033)
T PLN03142 985 RLIEKE 990 (1033)
T ss_pred HHHHHH
Confidence 776443
No 43
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=91.63 E-value=0.53 Score=49.23 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
...||.||-.++-++...||.+..+|-+.||.|+-..+..+|+...+.+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999887665443
No 44
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=91.62 E-value=0.29 Score=42.49 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----Chhhhhh------------cCCCCCHHHHHHHHHHHhHHHH
Q 016708 64 DIKRGKFSLQEEQTIIQLHALLGN----RWSAIAT------------HLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
..++..||++||.-|+-.+.+||- .|..|-. .+..||+.+|..|.+++++-..
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~ 114 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE 114 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence 456778999999999999999996 6988865 2357999999999999887543
No 45
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.53 E-value=0.039 Score=50.69 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=37.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccc----ccCccCccccccccccccC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAK----AGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~----~~~~Rt~kqCr~Rw~n~L~ 62 (384)
.|+..||.|||.+|-+.|-.|+...=.++++- --++|+...|..||..+++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 46789999999999999998864332333221 1146999999999977776
No 46
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.96 E-value=0.065 Score=53.59 Aligned_cols=50 Identities=16% Similarity=0.474 Sum_probs=44.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
+----|+..|+.+|++.....|-++|..||..+| .|....|+++|..++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 3455699999999999999999999999988888 9999999999988654
No 47
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=90.90 E-value=0.26 Score=50.54 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=63.9
Q ss_pred CcccccccccCccCccccccccccccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCChh
Q 016708 36 SWRALPAKAGLQRCGKSCRLRWTNYLRPD-------------------------IKRGKFSLQEEQTIIQLHALLGNRWS 90 (384)
Q Consensus 36 ~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~-------------------------ikrg~WT~EED~~Ll~lv~~~G~kW~ 90 (384)
.|.-++- -.+-|...--..+|...-.+. +....||.+|-+-|.+|++.|.-+|-
T Consensus 75 ~W~w~pF-tn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPF-TNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred Cceeecc-CCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 5766632 233566666677777663221 12346999999999999999999999
Q ss_pred hhhhc-----CCC-CCHHHHHHHHHHHhHHHHhhcC
Q 016708 91 AIATH-----LPK-RTDNEIKNYWNTHLKKRLAKMG 120 (384)
Q Consensus 91 ~IA~~-----lpg-RT~~qcKnRW~~~Lkk~l~k~~ 120 (384)
.||.. ++. ||-.++|.||+...++.++...
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~ 189 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA 189 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence 99976 666 9999999999999988887654
No 48
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=89.91 E-value=0.76 Score=37.07 Aligned_cols=46 Identities=26% Similarity=0.484 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------ChhhhhhcCC-----CCCHHHHHHHHHHHhHH
Q 016708 69 KFSLQEEQTIIQLHALL---GN----------RWSAIATHLP-----KRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~---G~----------kW~~IA~~lp-----gRT~~qcKnRW~~~Lkk 114 (384)
.||+++++.|++++.+. |+ .|..|+..|- ..|..||++||..+.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999998543 22 2999998762 36889999999766543
No 49
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=89.53 E-value=0.51 Score=47.43 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCChhhhhhcCC----CCCHHHHHHHHHHHhHHHHh
Q 016708 67 RGKFSLQEEQTIIQLHALL----------GNRWSAIATHLP----KRTDNEIKNYWNTHLKKRLA 117 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~----------G~kW~~IA~~lp----gRT~~qcKnRW~~~Lkk~l~ 117 (384)
...|+.+|-..||++..+. +.-|..||+.+. -||+.+||++|.++.++.-+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999987543 234999999653 49999999999987665443
No 50
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=87.36 E-value=0.61 Score=47.77 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 68 GKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
.+|+.+|-++..++...+|..+..|+..+|.|..+|||.+|..--++.
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n 413 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN 413 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence 379999999999999999999999999999999999999997655443
No 51
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=79.42 E-value=3.6 Score=45.52 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=50.9
Q ss_pred ccccccCccCccccccccccccCCCC---CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 40 LPAKAGLQRCGKSCRLRWTNYLRPDI---KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 40 Iaa~~~~~Rt~kqCr~Rw~n~L~p~i---krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
+|..+++-|.. .||+.|+--.. -...||+.|-.+.-+++..|..++..|++.++++|-.||-.+|+..
T Consensus 593 vAlE~LLlr~p----~~~~~h~la~Y~Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 593 VALEMLLLRKP----VRLKCHPLANYHYAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred HHHHHHHhcCC----CCccccccceeeecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 33344444444 34554443322 2357999999999999999999999999999999999999988765
No 52
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=79.38 E-value=4.4 Score=29.22 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
+++++.++.++...|-.+.+||..+ |.+...|+.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4678888999999999999999999 8999999998776654
No 53
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=75.92 E-value=1.3 Score=45.51 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=41.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccc
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~ 60 (384)
..-+|+.+|-++..++....|. ++..| +.|+|.|..+|+...|.+-
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LI-s~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGT-DFSLI-SSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcc-hHHHH-HHhcCchhHHHHHHHHHHH
Confidence 3457999999999999999997 99999 7888899999999998764
No 54
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=75.55 E-value=2.1 Score=37.20 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=28.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGH---GSWRALPAKA 44 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~---~~W~~Iaa~~ 44 (384)
.-++..||.|||.-|+-.+.+||. +.|..|-..+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 667889999999999999999999 8999995543
No 55
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=75.02 E-value=2.8 Score=34.10 Aligned_cols=25 Identities=40% Similarity=0.706 Sum_probs=14.4
Q ss_pred CCCccCCCCHHHHHHH--------HHHHHHhCC
Q 016708 10 VGLKKGPWTPEEDQKL--------LAYIEEHGH 34 (384)
Q Consensus 10 ~~lkKg~WT~EEDe~L--------~~~V~~yG~ 34 (384)
|.--.|-||+|+|+.| .+++++||.
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG~ 75 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHGE 75 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-H
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhCH
Confidence 4445889999999999 456677773
No 56
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=70.31 E-value=1.4 Score=44.34 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------CCCCcccccccc---cCccCcccccccccccc
Q 016708 15 GPWTPEEDQKLLAYIEEH---------GHGSWRALPAKA---GLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~y---------G~~~W~~Iaa~~---~~~Rt~kqCr~Rw~n~L 61 (384)
..|+.+|-..|+.+..+. ...-|..||.++ +..|++.||+.+|.|..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 789999999999988643 123599997743 56799999999998743
No 57
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=64.00 E-value=7 Score=43.43 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccc
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTN 59 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n 59 (384)
.-.||+.|-.++.+++-.|. +++-.| ++|.++++.+||-+-|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v-~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFV-QKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHH-HHHhccccHHHHHHHHHH
Confidence 45799999999999999998 599999 788889999999987754
No 58
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=60.94 E-value=29 Score=35.15 Aligned_cols=51 Identities=27% Similarity=0.532 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHh-CCC---hhhhhhcCCCCCHHHHHHHHHHHhHHHHhh
Q 016708 67 RGKFSLQEEQTIIQLHALL-GNR---WSAIATHLPKRTDNEIKNYWNTHLKKRLAK 118 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~-G~k---W~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k 118 (384)
-..||.-|...|+++.+.. |.. -..|++.+++|+..+|++.-+. ||.++.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~-LK~rvar 75 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQ-LKGRVAR 75 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHH-HHHHHHH
Confidence 4579999999999887665 433 5688899999999999996544 4544443
No 59
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=58.99 E-value=16 Score=39.82 Aligned_cols=53 Identities=11% Similarity=0.387 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhh----------hcCCCCCHHHHHHHHHHHhHHHHhhc
Q 016708 67 RGKFSLQEEQTIIQLHALLGNRWSAIA----------THLPKRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kW~~IA----------~~lpgRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
+..||-+|+.-....+.++|.++.+|- ..+.-+|..|++.+|+..+++..+-.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 668999999999999999999999882 23344688899999888877655443
No 60
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=58.99 E-value=8.3 Score=45.19 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=44.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccc-cccccccccCCCCCCCCCCHHHHHHHHHHHHHh-CCChh
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKS-CRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALL-GNRWS 90 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kq-Cr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~-G~kW~ 90 (384)
.---|..+||..|+-.|-+||.++|..| |.... |..- +..+.-.+..+.+=..+-..|+.+...+ +.+|.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~I-------r~Dp~L~l~d-Ki~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~ 1203 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAI-------RLDPDLGLTD-KIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTP 1203 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHh-------ccCccccchh-hhcccccCCchHHHHHHHHHHHHHHhhcccCCCc
Confidence 4567999999999999999999999999 22222 2211 1222222344556666666666666665 34444
Q ss_pred h
Q 016708 91 A 91 (384)
Q Consensus 91 ~ 91 (384)
+
T Consensus 1204 ~ 1204 (1373)
T KOG0384|consen 1204 K 1204 (1373)
T ss_pred h
Confidence 4
No 61
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=56.51 E-value=4.5 Score=32.49 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------Cccccccccc----CccCccccccccc
Q 016708 16 PWTPEEDQKLLAYIEEH---GHG---------SWRALPAKAG----LQRCGKSCRLRWT 58 (384)
Q Consensus 16 ~WT~EEDe~L~~~V~~y---G~~---------~W~~Iaa~~~----~~Rt~kqCr~Rw~ 58 (384)
.||+++++.|++++.+. |.. .|..|+..+. ...+.+||+.||.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~ 59 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK 59 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 59999999999988654 211 2777755543 3345566666654
No 62
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=55.59 E-value=22 Score=33.63 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCC---CCCHHHHHHHHHHHhHH
Q 016708 69 KFSLQEEQTIIQLHALLGNRWSAIATHLP---KRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lp---gRT~~qcKnRW~~~Lkk 114 (384)
.|++++|-+||..|.. ++.-..|+.-++ ..|-.+|..||+.+|..
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 4999999999988865 566667766543 57899999999988764
No 63
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=52.58 E-value=30 Score=24.52 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 73 QEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
++++.++.+.-..|-.+..||..+ |-+...|+.+-...+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 456666766666677899999999 77888888877766654
No 64
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=50.04 E-value=17 Score=33.15 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHH
Q 016708 69 KFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWN 109 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~ 109 (384)
.||+|+.++|.+|..+ |..=++||..|++.|.+.|.-+-+
T Consensus 2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~h 41 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKAH 41 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhhh
Confidence 5999999999998854 777899999998899999876554
No 65
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=49.08 E-value=7.6 Score=31.52 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=10.3
Q ss_pred CCCCCCCCCHHHHHHHH
Q 016708 63 PDIKRGKFSLQEEQTII 79 (384)
Q Consensus 63 p~ikrg~WT~EED~~Ll 79 (384)
|....|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 66678999999999994
No 66
>smart00595 MADF subfamily of SANT domain.
Probab=48.74 E-value=20 Score=28.29 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.7
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 89 WSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 89 W~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
|..||..|.. +..+|+.+|+++-.
T Consensus 30 W~~Ia~~l~~-~~~~~~~kw~~LR~ 53 (89)
T smart00595 30 WEEIAEELGL-SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 9999999955 99999999987644
No 67
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=47.96 E-value=34 Score=24.11 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 73 QEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
+=|.+|+.+...-+ -.|..||+.+ |=+...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 45788888888877 4599999999 88999999998654
No 68
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=47.20 E-value=41 Score=26.93 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCC---CC--HHHHHHHHHHHhHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPK---RT--DNEIKNYWNTHLKK 114 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpg---RT--~~qcKnRW~~~Lkk 114 (384)
+|..+|.+.|+ +|..||+.|+- -+ ..++|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 46677777773 59999999853 12 36799999888764
No 69
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=46.65 E-value=37 Score=30.02 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 73 QEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
+-|.+|+++.++-| -.|+.||+.+ |-+...|+.|+..+...-
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 56888888888877 5699999999 999999999996655443
No 70
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=43.92 E-value=39 Score=34.97 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhh-cCCCCCHHHHHHHHHHH
Q 016708 68 GKFSLQEEQTIIQLHALLGNRWSAIAT-HLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcKnRW~~~ 111 (384)
..|+++|-+..-+-++.||..+..|.+ +++.|+-.+|-.+|+..
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlW 322 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLW 322 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHh
Confidence 369999999999999999999999965 68999999999887654
No 71
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=43.34 E-value=53 Score=27.89 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 74 EEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 74 ED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
++..++.+.-..|-.+..||+.+ |.+...|+.+....+++
T Consensus 117 ~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 117 QCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33444444444577899999998 88999999998876443
No 72
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=42.19 E-value=25 Score=38.26 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 65 IKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
...++|+.+|-.+-.......|.+.+.|+..+|.|...|||.++..--++.
T Consensus 407 ~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 407 LETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred cccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 345689999999999999999999999999999999999999886544443
No 73
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=40.72 E-value=54 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCC-----CHHHHHHHHHHHhHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKR-----TDNEIKNYWNTHLKKR 115 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgR-----T~~qcKnRW~~~Lkk~ 115 (384)
+|..+|.+.|+ +|..||..|+-. ...++|..|..+|.+-
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 46667777664 699999998533 3567899898887654
No 74
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=38.20 E-value=40 Score=27.43 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHH
Q 016708 75 EQTIIQLHALLGNRWSAIATHLPKRTDNEI 104 (384)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~qc 104 (384)
|+.|..+...+|..|..+|.+| |=+..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678899999999999999999 4444433
No 75
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=38.13 E-value=80 Score=28.55 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCC----CCCHHHHHHHHHHHh
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLP----KRTDNEIKNYWNTHL 112 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lp----gRT~~qcKnRW~~~L 112 (384)
+...-|..|..-|..|+++||.++.+.|.-.. -.|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 44578999999999999999999999997653 389999998876653
No 76
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=37.79 E-value=63 Score=33.61 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----------------ChhhhhhcCC-----CCCHHHHHHHHHHHhHHHHhhc
Q 016708 65 IKRGKFSLQEEQTIIQLHALLGN----------------RWSAIATHLP-----KRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~----------------kW~~IA~~lp-----gRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
.-.|.|+++=|+...++.+.|.. +=..||+++. .||.+||-.+-+.+-|+++++.
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~rei 149 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREI 149 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999988732 3578888763 4999999999988888887764
No 77
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=37.33 E-value=50 Score=29.57 Aligned_cols=44 Identities=5% Similarity=-0.052 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHHH
Q 016708 72 LQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 72 ~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
.+-|.+|+.+.++-| -.|..||+.+ |=+...|+.|++.+.+.-+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 456888888777777 5699999999 9999999999966655443
No 78
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=34.43 E-value=54 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHHH
Q 016708 75 EQTIIQLHALLGNRWSAIATHLPKRTDNEIK 105 (384)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcK 105 (384)
|.+|..+...+|..|..+|..| |=+...|.
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~ 33 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEIN 33 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHH
Confidence 6678888999999999999999 54554443
No 79
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=33.81 E-value=33 Score=37.60 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=34.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccC---------ccCccccccccccccC
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGL---------QRCGKSCRLRWTNYLR 62 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~---------~Rt~kqCr~Rw~n~L~ 62 (384)
|..||..|.+-...++.++|. ++.+|-..+.. -++-.|.|..|+..++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 678999999999999999994 88888222221 2344577777766543
No 80
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=33.57 E-value=14 Score=32.69 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCC
Q 016708 19 PEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIK 66 (384)
Q Consensus 19 ~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ik 66 (384)
.+-|.+|+.+.++.|.-.|.+||..++ -+...|+.|+......++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 467999999999999889999988777 8888999998876655443
No 81
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=33.39 E-value=84 Score=25.78 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 77 TIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 77 ~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
.++.++-..|..+..||+.+ |=+...|+++....+++
T Consensus 117 ~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 117 EVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred HHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33344444578899999999 56888898888775444
No 82
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=32.91 E-value=93 Score=27.26 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 83 ALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
...|-.-..||..| |.+...|+.+....++
T Consensus 131 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 160 (173)
T PRK09645 131 YYRGWSTAQIAADL-GIPEGTVKSRLHYALR 160 (173)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 33466789999999 8889999998875543
No 83
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=32.11 E-value=1e+02 Score=27.81 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHhCCChhhhhhcCCCCCHHHHHHHHHH---HhHHHHhhcCCC
Q 016708 83 ALLGNRWSAIATHLPKRTDNEIKNYWNT---HLKKRLAKMGID 122 (384)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcKnRW~~---~Lkk~l~k~~~~ 122 (384)
...|-.-..||..| |-+...|+.+... .|++.+.+..+.
T Consensus 149 ~~~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~~l~~~~~~ 190 (195)
T PRK12532 149 EILGFSSDEIQQMC-GISTSNYHTIMHRARESLRQCLQIKWFN 190 (195)
T ss_pred HHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33466789999999 8888888888765 555555555443
No 84
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.97 E-value=12 Score=33.53 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCC
Q 016708 19 PEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDI 65 (384)
Q Consensus 19 ~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~i 65 (384)
.+-|.+|+.+.++.|.-.|.+||++++ -+...|+.|+......++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 667999999999999889999988887 778889999887665554
No 85
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=31.11 E-value=1e+02 Score=27.92 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 74 EEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 74 ED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
+..+++.+....|-.+.+||..| |-+...|+.+|.....
T Consensus 139 ~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~ 177 (185)
T PF07638_consen 139 RQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARA 177 (185)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34445555555678899999999 9999999999987653
No 86
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=30.70 E-value=54 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=20.8
Q ss_pred hhhhhhcCCC-CCHHHHHHHHHHHhHH
Q 016708 89 WSAIATHLPK-RTDNEIKNYWNTHLKK 114 (384)
Q Consensus 89 W~~IA~~lpg-RT~~qcKnRW~~~Lkk 114 (384)
|..||..|+. -+..+|+.+|..+...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 9999999964 5778899999876543
No 87
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=30.35 E-value=1.3e+02 Score=25.83 Aligned_cols=31 Identities=6% Similarity=-0.011 Sum_probs=23.4
Q ss_pred HHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 83 ALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
...|-.-..||..| |-+...|+.+....+++
T Consensus 119 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 119 YWEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33466789999999 78999999987655443
No 88
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=29.20 E-value=80 Score=23.41 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHH
Q 016708 73 QEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYW 108 (384)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW 108 (384)
++|+-.+.+..+.|-.-.+||+.+ +|+.+.|+++-
T Consensus 7 ~~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 7 DAEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 455666778888899999999999 99998888753
No 89
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=27.44 E-value=1.3e+02 Score=19.99 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 74 EEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 74 ED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
++..++.+....|-.+..||..+ |-+...|+.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~ 50 (55)
T cd06171 14 REREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRA 50 (55)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 34555666556678899999998 66667776665443
No 90
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=26.77 E-value=1.4e+02 Score=25.78 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.4
Q ss_pred HHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 81 LHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 81 lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+....|-.+..||..| |.+...|+.+....+++
T Consensus 139 l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 139 LREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3334567899999999 78888998887654433
No 91
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=26.61 E-value=64 Score=25.72 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHH
Q 016708 75 EQTIIQLHALLGNRWSAIATHLPKRTDNEI 104 (384)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~qc 104 (384)
|..|..+....|..|.++|++| |-+..+|
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI 32 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDI 32 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 4567788899999999999999 4444433
No 92
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=26.28 E-value=1.5e+02 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcC
Q 016708 78 IIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMG 120 (384)
Q Consensus 78 Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~ 120 (384)
++.|....|-....||..+ |-+...|+.+-..-+++-.....
T Consensus 127 v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~~~~l~ 168 (172)
T PRK12523 127 AFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQCYIALY 168 (172)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhc
Confidence 3344444567899999999 88899999988776665544443
No 93
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=25.97 E-value=1.5e+02 Score=26.30 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.7
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhh
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAK 118 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k 118 (384)
..|....+||..| |-+...|+.+....+++-...
T Consensus 145 ~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~Lr~~ 178 (184)
T PRK12512 145 VEGASIKETAAKL-SMSEGAVRVALHRGLAALAAK 178 (184)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHH
Confidence 3466789999999 888899999887665554433
No 94
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=25.77 E-value=1.5e+02 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=22.4
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
..|-.-..||..| |-+...|+++....++
T Consensus 120 ~~g~s~~EIA~~l-gis~~tV~~~l~Rar~ 148 (160)
T PRK09642 120 LEEKSYQEIALQE-KIEVKTVEMKLYRARK 148 (160)
T ss_pred HhCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3466789999999 8888999988765443
No 95
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=25.46 E-value=1.7e+02 Score=26.06 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhc
Q 016708 82 HALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 82 v~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
....|-....||..| |-+...||.|...-++.-+..+
T Consensus 139 ~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~~~~ 175 (178)
T PRK12529 139 ATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCLSLM 175 (178)
T ss_pred HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhC
Confidence 334467899999999 8899999999888777766553
No 96
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=25.42 E-value=31 Score=35.86 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=41.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccc-----ccCccCcccccccccccc
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAK-----AGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~-----~~~~Rt~kqCr~Rw~n~L 61 (384)
.+.-..||.||-+-|..+++.|.- .|-.|+.+ ....|+-....+||+.+.
T Consensus 127 ~l~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 345578999999999999999986 89999888 454599999999998653
No 97
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=25.23 E-value=1.1e+02 Score=26.41 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=22.5
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
..|-....||..| |-+...|++++...++
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 167 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRARQ 167 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3466799999999 7888899888766433
No 98
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=24.54 E-value=1.5e+02 Score=26.88 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=23.6
Q ss_pred HHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 83 ALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
-..|-...+||..| |-+...|+.|+...++
T Consensus 147 ~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~ 176 (192)
T PRK09643 147 DMQGYSVADAARML-GVAEGTVKSRCARGRA 176 (192)
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34567799999999 8889999999865433
No 99
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=24.40 E-value=87 Score=25.27 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHHHH
Q 016708 75 EQTIIQLHALLGNRWSAIATHLPKRTDNEIKN 106 (384)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKn 106 (384)
|..|..+...+|.+|..+|+.| |=+...|..
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 566655544
No 100
>PRK04217 hypothetical protein; Provisional
Probab=24.14 E-value=2e+02 Score=24.71 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 68 GKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
..-|.+| ..++.+....|-....||+.+ |-+...|+.++....++.
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkL 86 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKV 86 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4566666 577777777788999999999 999999999998755444
No 101
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=23.09 E-value=1.5e+02 Score=26.74 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=22.4
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHh
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHL 112 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~L 112 (384)
..|-....||..| |-+...||.|....+
T Consensus 148 ~~g~s~~EIA~~l-gis~~tVk~~l~RAr 175 (189)
T PRK12530 148 YLELSSEQICQEC-DISTSNLHVLLYRAR 175 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3466799999999 899999999876543
No 102
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.02 E-value=99 Score=24.95 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhhhhcCCCCCHHHH
Q 016708 78 IIQLHALLGNRWSAIATHLPKRTDNEI 104 (384)
Q Consensus 78 Ll~lv~~~G~kW~~IA~~lpgRT~~qc 104 (384)
|..+....|..|..+|+.| |-++.+|
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI 35 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEI 35 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3346678899999999999 5555554
No 103
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=22.76 E-value=47 Score=30.07 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=30.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc---CccCcccccccc
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAG---LQRCGKSCRLRW 57 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~---~~Rt~kqCr~Rw 57 (384)
-+..+-+..|.+-|..+|++||. ++..++.-.- -..|..||+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki 159 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKI 159 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHH
Confidence 45677899999999999999995 8776643222 124444554443
No 104
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=22.73 E-value=1.3e+02 Score=25.03 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHh----C----CChhhhhhc----CC-CCCHHHHHHHHHHHhHHHH
Q 016708 68 GKFSLQEEQTIIQLHALL----G----NRWSAIATH----LP-KRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~----G----~kW~~IA~~----lp-gRT~~qcKnRW~~~Lkk~l 116 (384)
.-||+|+|-.||+.+..| | ..|..+... +. .=+..|+..+-..+.++..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~ 66 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYR 66 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 469999999999988776 5 235444433 32 2377788887766655443
No 105
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=22.09 E-value=84 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHH
Q 016708 72 LQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKN 106 (384)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKn 106 (384)
.||.++|+.. -..|.+|..+|..| |=++..|++
T Consensus 2 ~~~v~~ll~~-~nlG~dW~~LA~~L-G~~~~~I~~ 34 (77)
T cd08311 2 QEEVEKLLES-GRPGRDWRSLAGEL-GYEDEAIDT 34 (77)
T ss_pred hHHHHHHHhC-CCCccCHHHHHHHc-CCCHHHHHH
Confidence 5788888732 24678999999999 666666655
No 106
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=22.02 E-value=1.8e+02 Score=23.52 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHHH
Q 016708 73 QEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
+.|.+|+.+..+.+ -.+..||+.+ |-+...|+.+...+.+..+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 56788888888877 5699999999 8899999999977666543
No 107
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=21.92 E-value=46 Score=35.37 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccc
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTN 59 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n 59 (384)
-.+..||.||--++.++...||. +..+| .++++.|+-.+++.-|..
T Consensus 185 ~~~d~WT~Ed~vlFe~aF~~~GK-~F~kI-rq~LP~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 185 EFPDEWTAEDIVLFEQAFQFFGK-DFHKI-RQALPHRSLASLVQYYYS 230 (534)
T ss_pred CCcccchHHHHHHHHHHHHHhcc-cHHHH-HHHccCccHHHHHHHHHH
Confidence 34667999999999999999995 99999 778889998888776654
No 108
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=21.82 E-value=94 Score=25.25 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCChhhhhhcCCCCCHHHHHH
Q 016708 76 QTIIQLHALLGNRWSAIATHLPKRTDNEIKN 106 (384)
Q Consensus 76 ~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKn 106 (384)
+.|-.+....|.+|..+|+.| |=++.+|..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 345566688899999999999 666666655
No 109
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=21.63 E-value=49 Score=34.31 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccc
Q 016708 15 GPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWT 58 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~ 58 (384)
--|+.+|-....+.++.|| +++..|.+.-...|+...|.+-|+
T Consensus 278 ~~wsEeEcr~FEegl~~yG-KDF~lIr~nkvrtRsvgElVeyYY 320 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYG-KDFHLIRANKVRTRSVGELVEYYY 320 (445)
T ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHhcccccchHHHHHHHHH
Confidence 3599999999999999999 599999776666777777777653
No 110
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=21.48 E-value=1.9e+02 Score=25.85 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=23.3
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
..|-....||..| |-+...|+.++...+++
T Consensus 145 ~~~~s~~eIA~~l-gis~~tV~~~l~Rar~~ 174 (189)
T PRK12515 145 YHEKSVEEVGEIV-GIPESTVKTRMFYARKK 174 (189)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466799999999 77999999998765443
No 111
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=21.27 E-value=1.8e+02 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=23.7
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
..|-....||..| |-+...|+.+....+++-
T Consensus 133 ~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~L 163 (169)
T TIGR02954 133 YHDLTIKEIAEVM-NKPEGTVKTYLHRALKKL 163 (169)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3456789999998 679999999887765543
No 112
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=20.56 E-value=1.5e+02 Score=26.22 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=22.8
Q ss_pred hCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 85 LGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
.|-....||..| |=+...|+++....+++-
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~~L 182 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRAREAI 182 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 356789999999 777899999887664443
No 113
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=20.46 E-value=1.8e+02 Score=25.65 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=22.5
Q ss_pred hCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 85 LGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
.|..+..||..+ |-+...|+++....+++
T Consensus 151 ~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456799999999 88888998887655443
Done!