Query 016708
Match_columns 384
No_of_seqs 319 out of 1529
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.4E-33 1.2E-37 232.6 9.3 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.3E-32 4.4E-37 238.3 10.1 109 14-123 2-110 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 7.5E-33 2.6E-37 231.9 7.9 105 14-119 1-105 (107)
4 1h89_C C-MYB, MYB proto-oncoge 100.0 7.5E-34 2.6E-38 253.1 -0.6 153 11-176 3-156 (159)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 2.6E-32 9E-37 235.1 8.0 107 9-116 22-128 (128)
6 3osg_A MYB21; transcription-DN 100.0 5.3E-32 1.8E-36 233.1 9.3 106 8-115 5-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 6.7E-30 2.3E-34 227.6 8.1 107 9-116 53-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.2E-24 4.1E-29 187.2 -0.5 122 42-175 2-124 (128)
9 2dim_A Cell division cycle 5-l 99.8 1.1E-21 3.6E-26 152.5 1.4 67 8-75 3-69 (70)
10 2juh_A Telomere binding protei 99.7 2.8E-18 9.7E-23 146.7 2.6 83 9-91 12-103 (121)
11 2llk_A Cyclin-D-binding MYB-li 99.7 8.1E-18 2.8E-22 132.2 4.7 57 54-111 10-66 (73)
12 1ign_A Protein (RAP1); RAP1,ye 99.7 1.5E-17 5E-22 156.3 6.0 106 9-115 3-200 (246)
13 2din_A Cell division cycle 5-l 99.7 7E-17 2.4E-21 123.8 7.0 61 59-120 1-61 (66)
14 2cu7_A KIAA1915 protein; nucle 99.7 8.4E-17 2.9E-21 125.6 7.4 65 61-126 3-67 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 2.2E-17 7.7E-22 124.2 2.7 57 9-66 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.7 3.2E-17 1.1E-21 140.4 3.7 80 9-88 26-114 (122)
17 1gvd_A MYB proto-oncogene prot 99.6 3.6E-17 1.2E-21 119.7 2.6 52 12-64 1-52 (52)
18 2dim_A Cell division cycle 5-l 99.6 1.3E-16 4.6E-21 123.6 5.7 64 62-125 4-68 (70)
19 3osg_A MYB21; transcription-DN 99.6 2.5E-17 8.6E-22 141.4 -0.8 104 62-177 6-109 (126)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 7.1E-17 2.4E-21 118.0 1.7 52 12-64 1-52 (52)
21 1ity_A TRF1; helix-turn-helix, 99.6 1E-16 3.6E-21 124.0 2.6 63 9-71 5-68 (69)
22 2d9a_A B-MYB, MYB-related prot 99.6 4E-16 1.4E-20 117.3 4.8 55 62-116 3-58 (60)
23 1gv2_A C-MYB, MYB proto-oncoge 99.6 5.1E-17 1.8E-21 134.8 -1.5 100 64-175 1-101 (105)
24 3sjm_A Telomeric repeat-bindin 99.6 2.4E-16 8.1E-21 120.7 1.5 56 11-66 8-64 (64)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 1.7E-15 5.9E-20 110.6 6.0 50 65-114 1-51 (52)
26 1ity_A TRF1; helix-turn-helix, 99.6 2.4E-15 8.3E-20 116.3 6.9 61 60-120 3-66 (69)
27 1gvd_A MYB proto-oncogene prot 99.6 2.8E-15 9.7E-20 109.6 5.6 50 65-114 1-51 (52)
28 1x41_A Transcriptional adaptor 99.5 1.1E-15 3.7E-20 115.3 2.0 55 9-64 3-57 (60)
29 3zqc_A MYB3; transcription-DNA 99.5 9.4E-16 3.2E-20 132.3 1.6 98 67-176 2-100 (131)
30 2k9n_A MYB24; R2R3 domain, DNA 99.5 4.7E-16 1.6E-20 129.8 -0.4 96 67-174 1-97 (107)
31 1w0t_A Telomeric repeat bindin 99.5 8.4E-15 2.9E-19 107.6 6.2 49 66-114 1-52 (53)
32 1x41_A Transcriptional adaptor 99.5 7.7E-15 2.6E-19 110.6 5.6 53 62-114 3-56 (60)
33 2din_A Cell division cycle 5-l 99.5 7.5E-16 2.6E-20 118.1 -0.8 60 7-69 2-61 (66)
34 2yum_A ZZZ3 protein, zinc fing 99.5 1.3E-14 4.6E-19 113.6 5.6 58 62-119 3-66 (75)
35 1w0t_A Telomeric repeat bindin 99.5 3.9E-15 1.3E-19 109.4 1.4 50 13-62 1-51 (53)
36 2yum_A ZZZ3 protein, zinc fing 99.5 2.7E-15 9.1E-20 117.7 0.4 61 8-69 2-67 (75)
37 2elk_A SPCC24B10.08C protein; 99.5 5.7E-15 2E-19 110.7 2.1 52 10-61 5-56 (58)
38 3sjm_A Telomeric repeat-bindin 99.5 4.2E-14 1.4E-18 108.2 6.0 51 65-115 9-62 (64)
39 2elk_A SPCC24B10.08C protein; 99.5 7.7E-14 2.6E-18 104.5 6.3 50 63-112 5-56 (58)
40 2ltp_A Nuclear receptor corepr 99.2 9.7E-15 3.3E-19 118.6 0.0 57 59-115 8-64 (89)
41 2aje_A Telomere repeat-binding 99.4 8.1E-14 2.8E-18 116.5 3.7 79 8-86 7-94 (105)
42 2cu7_A KIAA1915 protein; nucle 99.4 2.9E-14 9.9E-19 111.1 0.5 58 8-67 3-60 (72)
43 2ckx_A NGTRF1, telomere bindin 99.4 1.5E-13 5E-18 110.4 3.8 70 15-84 1-79 (83)
44 2llk_A Cyclin-D-binding MYB-li 99.4 1.5E-13 5.3E-18 107.8 2.4 58 7-68 16-73 (73)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.3 8.8E-13 3E-17 103.5 5.8 52 62-113 13-68 (73)
46 2yus_A SWI/SNF-related matrix- 99.3 2.3E-12 8E-17 102.5 4.2 48 64-111 15-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.2 2.3E-12 8E-17 102.5 3.3 52 7-60 11-62 (79)
48 2juh_A Telomere binding protei 99.2 1.6E-11 5.5E-16 105.0 5.8 55 61-115 11-70 (121)
49 2ckx_A NGTRF1, telomere bindin 99.2 2.5E-11 8.5E-16 97.4 6.5 49 68-116 1-54 (83)
50 2ltp_A Nuclear receptor corepr 98.8 2E-12 6.8E-17 104.9 0.0 55 7-63 9-63 (89)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 1E-11 3.5E-16 116.8 4.6 56 63-118 4-65 (246)
52 2cjj_A Radialis; plant develop 99.2 3.3E-11 1.1E-15 98.6 6.8 58 66-123 7-69 (93)
53 2aje_A Telomere repeat-binding 99.2 4.5E-11 1.5E-15 99.9 7.5 54 62-115 8-66 (105)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.1 6.8E-12 2.3E-16 98.4 1.2 55 7-62 11-68 (73)
55 1x58_A Hypothetical protein 49 99.1 6.1E-11 2.1E-15 89.9 6.2 49 66-114 7-58 (62)
56 2roh_A RTBP1, telomere binding 99.1 4.8E-11 1.7E-15 102.1 5.2 53 63-115 27-84 (122)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 3E-09 1E-13 80.3 6.5 48 66-113 11-58 (61)
58 3hm5_A DNA methyltransferase 1 98.9 2.4E-09 8E-14 87.5 6.3 67 50-120 17-88 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.8 3.4E-09 1.2E-13 82.8 5.3 57 64-121 5-65 (72)
60 2cjj_A Radialis; plant develop 98.8 6.2E-10 2.1E-14 91.1 0.4 47 14-61 8-57 (93)
61 1x58_A Hypothetical protein 49 98.6 6.3E-09 2.2E-13 78.8 1.5 50 12-62 6-57 (62)
62 2iw5_B Protein corest, REST co 98.6 4.3E-08 1.5E-12 91.5 6.0 49 66-114 132-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.5 3.4E-08 1.2E-12 74.4 2.0 52 8-61 6-57 (61)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.4 4E-08 1.4E-12 76.7 0.3 51 10-62 4-57 (72)
65 1fex_A TRF2-interacting telome 98.3 7.9E-08 2.7E-12 72.2 0.7 49 14-62 2-58 (59)
66 1wgx_A KIAA1903 protein; MYB D 98.3 4.1E-07 1.4E-11 71.2 4.4 46 67-112 8-57 (73)
67 1fex_A TRF2-interacting telome 98.3 6.6E-07 2.2E-11 67.2 4.9 47 67-113 2-58 (59)
68 2xag_B REST corepressor 1; ami 98.3 5E-07 1.7E-11 92.8 4.7 44 68-111 381-424 (482)
69 1wgx_A KIAA1903 protein; MYB D 98.0 9.1E-07 3.1E-11 69.2 0.9 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.0 1.5E-06 5.2E-11 81.1 1.3 49 12-62 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1.2E-05 4E-10 60.9 5.8 50 62-111 4-54 (63)
72 1ug2_A 2610100B20RIK gene prod 97.9 1.9E-05 6.5E-10 63.8 6.6 49 69-117 35-86 (95)
73 4eef_G F-HB80.4, designed hema 97.7 6.4E-06 2.2E-10 64.3 1.1 43 67-109 20-66 (74)
74 2lr8_A CAsp8-associated protei 96.9 5.3E-06 1.8E-10 63.7 0.0 45 69-114 16-63 (70)
75 4iej_A DNA methyltransferase 1 97.6 0.00016 5.3E-09 58.9 7.3 61 55-119 22-87 (93)
76 1ofc_X ISWI protein; nuclear p 97.6 0.00014 4.8E-09 70.9 8.2 103 15-118 111-279 (304)
77 4eef_G F-HB80.4, designed hema 97.5 2.1E-05 7.3E-10 61.3 0.7 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.4 4.6E-05 1.6E-09 57.6 2.2 51 8-59 3-53 (63)
79 4a69_C Nuclear receptor corepr 97.4 0.00026 8.7E-09 57.7 5.8 45 67-111 43-87 (94)
80 2crg_A Metastasis associated p 97.3 0.00041 1.4E-08 53.5 6.2 44 67-110 8-52 (70)
81 3hm5_A DNA methyltransferase 1 96.9 0.00017 5.7E-09 58.9 0.7 50 12-62 28-81 (93)
82 2xag_B REST corepressor 1; ami 96.8 0.00035 1.2E-08 71.9 2.2 48 12-61 378-425 (482)
83 2ebi_A DNA binding protein GT- 96.8 0.00079 2.7E-08 53.4 3.7 49 67-115 4-66 (86)
84 2ebi_A DNA binding protein GT- 96.6 0.00014 4.7E-09 57.8 -2.3 49 13-61 3-63 (86)
85 2crg_A Metastasis associated p 96.4 0.001 3.4E-08 51.3 1.7 45 14-59 8-52 (70)
86 4b4c_A Chromodomain-helicase-D 96.3 0.0084 2.9E-07 54.5 7.6 46 69-114 136-196 (211)
87 2lr8_A CAsp8-associated protei 95.1 0.001 3.4E-08 51.1 0.0 47 14-62 14-62 (70)
88 4a69_C Nuclear receptor corepr 96.0 0.0018 6.2E-08 52.6 1.4 43 14-58 43-85 (94)
89 2y9y_A Imitation switch protei 95.6 0.033 1.1E-06 55.6 8.6 104 15-118 124-295 (374)
90 1ug2_A 2610100B20RIK gene prod 95.4 0.0043 1.5E-07 50.2 1.1 48 11-59 30-79 (95)
91 4b4c_A Chromodomain-helicase-D 94.0 0.039 1.3E-06 50.1 4.2 38 4-41 124-161 (211)
92 4iej_A DNA methyltransferase 1 92.2 0.041 1.4E-06 44.7 1.2 49 12-61 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 91.8 0.28 9.6E-06 47.7 6.7 48 67-114 110-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 91.0 0.64 2.2E-05 35.1 6.6 47 65-111 5-56 (64)
95 2xb0_X Chromo domain-containin 88.8 0.31 1.1E-05 46.6 4.1 26 15-40 169-194 (270)
96 1irz_A ARR10-B; helix-turn-hel 76.3 1.1 3.6E-05 33.9 1.7 46 12-58 5-54 (64)
97 2xb0_X Chromo domain-containin 66.0 12 0.00042 35.5 6.9 48 67-114 3-55 (270)
98 2y9y_A Imitation switch protei 51.2 24 0.00084 35.0 6.4 46 68-113 124-171 (374)
99 3hug_A RNA polymerase sigma fa 47.1 31 0.001 26.3 5.2 47 73-120 40-89 (92)
100 2o8x_A Probable RNA polymerase 45.6 28 0.00094 24.5 4.4 41 73-114 18-58 (70)
101 2lm1_A Lysine-specific demethy 45.2 32 0.0011 27.5 5.2 39 77-115 48-98 (107)
102 2li6_A SWI/SNF chromatin-remod 44.1 14 0.00049 30.3 3.0 39 77-115 53-99 (116)
103 2rq5_A Protein jumonji; develo 43.7 5.4 0.00018 33.5 0.3 45 36-83 65-113 (121)
104 2jrz_A Histone demethylase jar 43.2 27 0.00093 28.7 4.5 39 77-115 44-94 (117)
105 2cxy_A BAF250B subunit, HBAF25 41.6 34 0.0012 28.4 4.9 39 77-115 55-105 (125)
106 3cz6_A DNA-binding protein RAP 41.5 16 0.00054 32.4 2.9 25 10-34 110-142 (168)
107 1kkx_A Transcription regulator 40.4 19 0.00064 30.1 3.1 40 78-117 53-100 (123)
108 1ku3_A Sigma factor SIGA; heli 40.4 37 0.0013 24.6 4.5 42 73-115 13-58 (73)
109 2eqy_A RBP2 like, jumonji, at 38.4 36 0.0012 28.1 4.6 39 77-115 46-96 (122)
110 2li6_A SWI/SNF chromatin-remod 37.5 5.4 0.00019 32.9 -0.7 39 24-63 53-98 (116)
111 2p7v_B Sigma-70, RNA polymeras 35.2 38 0.0013 24.2 3.8 41 73-114 8-52 (68)
112 1c20_A DEAD ringer protein; DN 31.9 62 0.0021 26.8 5.0 40 77-116 56-108 (128)
113 1ig6_A MRF-2, modulator recogn 31.5 9.3 0.00032 30.9 -0.2 40 24-63 37-87 (107)
114 2kk0_A AT-rich interactive dom 30.6 54 0.0019 27.9 4.6 40 77-116 68-120 (145)
115 1u78_A TC3 transposase, transp 29.8 1.9E+02 0.0065 22.7 7.7 88 15-106 5-98 (141)
116 2jxj_A Histone demethylase jar 29.5 26 0.00089 27.5 2.1 38 77-114 40-89 (96)
117 3cz6_A DNA-binding protein RAP 27.4 34 0.0012 30.3 2.7 47 63-115 110-156 (168)
118 1x3u_A Transcriptional regulat 27.1 1E+02 0.0035 22.0 5.1 41 70-113 17-57 (79)
119 2q1z_A RPOE, ECF SIGE; ECF sig 25.1 63 0.0021 26.9 4.0 31 84-115 149-179 (184)
120 2yqf_A Ankyrin-1; death domain 25.0 89 0.003 25.0 4.7 35 71-106 14-48 (111)
121 3ulq_B Transcriptional regulat 24.9 1.2E+02 0.004 23.3 5.2 46 66-114 26-71 (90)
122 3c57_A Two component transcrip 24.4 1E+02 0.0034 23.6 4.8 43 69-114 27-69 (95)
123 1or7_A Sigma-24, RNA polymeras 23.6 1E+02 0.0035 25.7 5.0 34 81-115 151-184 (194)
124 1je8_A Nitrate/nitrite respons 22.7 1E+02 0.0035 22.9 4.4 43 69-114 21-63 (82)
125 1tty_A Sigma-A, RNA polymerase 21.9 88 0.003 23.5 3.9 41 73-114 21-65 (87)
126 2kk0_A AT-rich interactive dom 21.9 26 0.0009 29.9 0.9 56 24-79 68-136 (145)
127 3e7l_A Transcriptional regulat 21.6 1.5E+02 0.0051 21.0 4.9 42 73-123 19-60 (63)
128 2jpc_A SSRB; DNA binding prote 21.3 1.3E+02 0.0046 20.3 4.5 38 75-114 3-40 (61)
129 1fse_A GERE; helix-turn-helix 20.9 1.2E+02 0.0043 21.2 4.4 43 68-113 10-52 (74)
130 2jvw_A Uncharacterized protein 20.7 21 0.00071 28.3 -0.0 45 22-79 18-69 (88)
131 2rq5_A Protein jumonji; develo 20.6 94 0.0032 25.8 4.0 76 14-115 7-97 (121)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=3.4e-33 Score=232.61 Aligned_cols=105 Identities=43% Similarity=0.864 Sum_probs=98.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWS 90 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~ 90 (384)
+++||+||+|||++|+++|++||.++|..||..+ ++|+++||++||.++|+|.+++++||+|||++|++++.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999996655 599999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHhHHHH
Q 016708 91 AIATHLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 91 ~IA~~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=1.3e-32 Score=238.27 Aligned_cols=109 Identities=37% Similarity=0.694 Sum_probs=103.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhh
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIA 93 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA 93 (384)
||+||+|||++|+++|.+||.++|..||..| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 7999999999999999999988999996665 599999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhHHHHhhcCCCC
Q 016708 94 THLPKRTDNEIKNYWNTHLKKRLAKMGIDP 123 (384)
Q Consensus 94 ~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p 123 (384)
++|||||+++|++||+.+|++++.....+.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999999999988765543
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=7.5e-33 Score=231.94 Aligned_cols=105 Identities=30% Similarity=0.549 Sum_probs=99.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhh
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIA 93 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA 93 (384)
||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999976665 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhHHHHhhc
Q 016708 94 THLPKRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 94 ~~lpgRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
++|||||+++|++||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999998876653
No 4
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=7.5e-34 Score=253.08 Aligned_cols=153 Identities=27% Similarity=0.470 Sum_probs=99.0
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGN-RW 89 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~-kW 89 (384)
+++|++||+|||++|+++|++||.++|..||..+ ++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 3689999999999999999999988999996665 499999999999999999999999999999999999999995 79
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCCCccccccccccccchhhhhHHHHHHHHhhc
Q 016708 90 SAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQNKNSANLSHMAQWESARLEAEARLVRESKL 169 (384)
Q Consensus 90 ~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k~~~~ls~~aqwesar~e~e~R~~re~k~ 169 (384)
..||.+||+||++||++||+.+|.+.+++..|++++...+..++... ...|..|+..+++|+..+++.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~------------g~~W~~Ia~~l~gRt~~~~kn 149 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL------------GNRWAEIAKLLPGRTDNAIKN 149 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH------------CSCHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH------------CCCHHHHHHHCCCCCHHHHHH
Confidence 99999999999999999999999999988888877665443333222 246999999999999999999
Q ss_pred ccccccc
Q 016708 170 RSHSFQL 176 (384)
Q Consensus 170 ~~~s~~~ 176 (384)
||+..+.
T Consensus 150 r~~~~~r 156 (159)
T 1h89_C 150 HWNSTMR 156 (159)
T ss_dssp HHHTTTC
T ss_pred HHHHHHh
Confidence 9987543
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2.6e-32 Score=235.13 Aligned_cols=107 Identities=41% Similarity=0.844 Sum_probs=100.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNR 88 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~k 88 (384)
+|++++|+||+|||++|+++|++||.++|..||..+ ++|+++||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 489999999999999999999999988999996555 5999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHhHHHH
Q 016708 89 WSAIATHLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 89 W~~IA~~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
|..||++|||||+++|++||+.++++++
T Consensus 101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988764
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=5.3e-32 Score=233.06 Aligned_cols=106 Identities=36% Similarity=0.651 Sum_probs=99.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGN 87 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~ 87 (384)
.+..++||+||+|||++|+++|.+||. +|..||..+ ++|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 999996655 499999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 88 RWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 88 kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
+|..||++|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=6.7e-30 Score=227.56 Aligned_cols=107 Identities=42% Similarity=0.845 Sum_probs=100.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNR 88 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~k 88 (384)
+|.+++++||+|||++|+++|.+||.++|..||..+ ++|+++||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 589999999999999999999999988899996555 6999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHhHHHH
Q 016708 89 WSAIATHLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 89 W~~IA~~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
|..||++|||||+++||+||+.++++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.88 E-value=1.2e-24 Score=187.23 Aligned_cols=122 Identities=23% Similarity=0.386 Sum_probs=88.6
Q ss_pred ccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcC
Q 016708 42 AKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGN-RWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMG 120 (384)
Q Consensus 42 a~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~ 120 (384)
+.++++|+++||++||.++|+|.+++++||+|||++|+++|++||. +|..||.+||+||+.||++||..+|.+.+++..
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~ 81 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSC
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccccc
Confidence 4455699999999999999999999999999999999999999995 699999999999999999999999999999998
Q ss_pred CCCCCCCCCCcccccCCCCCccccccccccccchhhhhHHHHHHHHhhccccccc
Q 016708 121 IDPVTHKPKNDALLSSDGQNKNSANLSHMAQWESARLEAEARLVRESKLRSHSFQ 175 (384)
Q Consensus 121 ~~p~~~k~~~~~~~~~~~~~k~~~~ls~~aqwesar~e~e~R~~re~k~~~~s~~ 175 (384)
|++++...+..++... ...|..|+..+++|+..+++.||+.++
T Consensus 82 WT~eEd~~L~~~~~~~------------G~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 82 WTEEEDRIIYQAHKRL------------GNRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCHHHHHHHHHHHHHH------------CSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHH------------CcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 8877665443333222 246999999999999999999998654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-21 Score=152.47 Aligned_cols=67 Identities=27% Similarity=0.556 Sum_probs=62.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHH
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEE 75 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED 75 (384)
..|.+++++||+|||++|+++|.+||.++|..||..|+ +|+++|||+||.+||+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999889999976665 99999999999999999999999999997
No 10
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.70 E-value=2.8e-18 Score=146.75 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=77.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCccCccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKA---GLQRCGKSCRLRWTNYLR-----PDIKRG-KFSLQEEQTII 79 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~---~~~Rt~kqCr~Rw~n~L~-----p~ikrg-~WT~EED~~Ll 79 (384)
++..++++||+|||++|+++|++||.++|..|+..+ +++||+.+|++||.++|+ |.++++ +|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 467889999999999999999999999999997765 379999999999999998 999999 99999999999
Q ss_pred HHHHHhCCChhh
Q 016708 80 QLHALLGNRWSA 91 (384)
Q Consensus 80 ~lv~~~G~kW~~ 91 (384)
.++..+|++|.+
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999986
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=8.1e-18 Score=132.19 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=46.8
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 54 RLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 54 r~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
.-||.++|+|++++++||+|||++|++++++||++|+.||+.| |||+++||+||+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 99999999999864
No 12
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.69 E-value=1.5e-17 Score=156.31 Aligned_cols=106 Identities=21% Similarity=0.299 Sum_probs=89.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCC-----CcccccccccCccCccccccccccccCCCCC-----------------
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHG-----SWRALPAKAGLQRCGKSCRLRWTNYLRPDIK----------------- 66 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~-----~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ik----------------- 66 (384)
.+.++|++||+|||++|+++|.+||.. .|..|| ++++||++.|||.||.++|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 356889999999999999999999763 299995 567799999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 016708 67 ------------RGKFSLQEEQTIIQLHAL-L------------------------------------------------ 85 (384)
Q Consensus 67 ------------rg~WT~EED~~Ll~lv~~-~------------------------------------------------ 85 (384)
+..||.|||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1
Q ss_pred -----C----CChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 86 -----G----NRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 86 -----G----~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
| ..|..||+.+|+||.+++|+||..+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 16999999999999999999998777654
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7e-17 Score=123.81 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=58.0
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcC
Q 016708 59 NYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMG 120 (384)
Q Consensus 59 n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~ 120 (384)
.||+|.+++++||.|||++|++++++||.+|.+||+ ++|||++|||+||+.+|++.+++..
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 379999999999999999999999999999999999 8899999999999999999998764
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=8.4e-17 Score=125.56 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCC
Q 016708 61 LRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTH 126 (384)
Q Consensus 61 L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~ 126 (384)
++|.+++++||+|||++|++++++||.+|..||.+||+||++|||+||+.++++.++. ++++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999998877 7665543
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-17 Score=124.22 Aligned_cols=57 Identities=28% Similarity=0.544 Sum_probs=52.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCC
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIK 66 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ik 66 (384)
.|.+++++||+|||++|+++|.+||.++|..||..+ ++|+++||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 478999999999999999999999988999996665 599999999999999999876
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.65 E-value=3.2e-17 Score=140.42 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=73.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCccCcccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKA---GLQRCGKSCRLRWTNYL-----RPDIKRGKFSLQE-EQTII 79 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~---~~~Rt~kqCr~Rw~n~L-----~p~ikrg~WT~EE-D~~Ll 79 (384)
+...++++||+|||+.|+++|++||.++|..|+... +.+|++.||++||.|+| +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 356789999999999999999999999999997654 37999999999999999 7999999999999 89999
Q ss_pred HHHHHhCCC
Q 016708 80 QLHALLGNR 88 (384)
Q Consensus 80 ~lv~~~G~k 88 (384)
++++.+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=3.6e-17 Score=119.70 Aligned_cols=52 Identities=44% Similarity=0.910 Sum_probs=48.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ 64 (384)
|+|++||+|||++|+++|.+||.++|..||..+ ++|+++||++||.+||+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 689999999999999999999988899996665 5999999999999999984
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=123.62 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=60.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCC
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVT 125 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~ 125 (384)
.|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.||++||+++|++.+++..|++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4778999999999999999999999 899999999999999999999999999999999888765
No 19
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.62 E-value=2.5e-17 Score=141.41 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=88.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCCCc
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQNK 141 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k 141 (384)
.+..++++||+|||++|+++|.+||.+|..||..||+||..||+.||.++|.+.+.+..|++++...+..++...+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G---- 81 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG---- 81 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC----
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC----
Confidence 4568899999999999999999999999999999999999999999999999999999998776654443332222
Q ss_pred cccccccccccchhhhhHHHHHHHHhhccccccccC
Q 016708 142 NSANLSHMAQWESARLEAEARLVRESKLRSHSFQLG 177 (384)
Q Consensus 142 ~~~~ls~~aqwesar~e~e~R~~re~k~~~~s~~~~ 177 (384)
..|..|+..+++|+..+++.||......
T Consensus 82 --------~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 82 --------RQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp --------SCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred --------cCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3599999999999999999999875443
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=7.1e-17 Score=118.02 Aligned_cols=52 Identities=35% Similarity=0.748 Sum_probs=46.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ 64 (384)
|++++||+|||++|+++|++||.++|..||..+ ++|+++||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999988999996665 5999999999999999985
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=1e-16 Score=123.96 Aligned_cols=63 Identities=19% Similarity=0.363 Sum_probs=56.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccC-ccCccccccccccccCCCCCCCCCC
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGL-QRCGKSCRLRWTNYLRPDIKRGKFS 71 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~-~Rt~kqCr~Rw~n~L~p~ikrg~WT 71 (384)
++..++++||+|||++|+++|++||.++|..||..+.. +|+++||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56788999999999999999999998899999666543 9999999999999999999987653
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4e-16 Score=117.34 Aligned_cols=55 Identities=24% Similarity=0.461 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHHH
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l 116 (384)
.|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999988754
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.59 E-value=5.1e-17 Score=134.76 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=85.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCCCcc
Q 016708 64 DIKRGKFSLQEEQTIIQLHALLGN-RWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQNKN 142 (384)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k~ 142 (384)
++++++||+|||++|+++|.+||. +|..||.+||+||..||+.||..+|.+.+++..|++++...+..++...
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~------ 74 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL------ 74 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH------
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh------
Confidence 478999999999999999999996 7999999999999999999999999999988888877665444333222
Q ss_pred ccccccccccchhhhhHHHHHHHHhhccccccc
Q 016708 143 SANLSHMAQWESARLEAEARLVRESKLRSHSFQ 175 (384)
Q Consensus 143 ~~~ls~~aqwesar~e~e~R~~re~k~~~~s~~ 175 (384)
...|..|+..+++|+..+++.||+..+
T Consensus 75 ------G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 75 ------GNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp ------SSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ------CCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 246999999999999999999998644
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=2.4e-16 Score=120.74 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=49.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccc-CccCccccccccccccCCCCC
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAG-LQRCGKSCRLRWTNYLRPDIK 66 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~-~~Rt~kqCr~Rw~n~L~p~ik 66 (384)
..+|++||+|||++|+++|++||.++|..||..++ .+|+++||++||.|+++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35799999999999999999999999999976653 589999999999999998764
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=1.7e-15 Score=110.63 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 65 IKRGKFSLQEEQTIIQLHALLGN-RWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+++++||+|||++|+++|.+||. +|..||.+||+||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 999999999999999999999999875
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=2.4e-15 Score=116.26 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=56.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC--CCCHHHHHHHHHHHhHHHHhhcC
Q 016708 60 YLRPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLP--KRTDNEIKNYWNTHLKKRLAKMG 120 (384)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcKnRW~~~Lkk~l~k~~ 120 (384)
..+|..++++||+|||++|+++|++|| ++|..||.+|+ +||+.|||+||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 456778899999999999999999999 79999999999 99999999999999999887654
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=2.8e-15 Score=109.56 Aligned_cols=50 Identities=34% Similarity=0.707 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 65 IKRGKFSLQEEQTIIQLHALLGN-RWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+++++||+|||++|+++|.+||. +|..||.+|++||++|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999998865
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.1e-15 Score=115.30 Aligned_cols=55 Identities=18% Similarity=0.484 Sum_probs=50.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCC
Q 016708 9 KVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPD 64 (384)
Q Consensus 9 k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ 64 (384)
.+.+++++||+|||++|+++|++||.++|..||+.++ +|+++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3689999999999999999999999889999976665 899999999999999875
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.54 E-value=9.4e-16 Score=132.31 Aligned_cols=98 Identities=21% Similarity=0.331 Sum_probs=84.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCCCccccc
Q 016708 67 RGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQNKNSAN 145 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k~~~~ 145 (384)
+|+||+|||++|+++|.+|| .+|..||.+||+||..||+.||.++|.+.+.+..|++++...+..++...+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-------- 73 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-------- 73 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC--------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC--------
Confidence 68999999999999999999 789999999999999999999999999999999998876654443333222
Q ss_pred cccccccchhhhhHHHHHHHHhhcccccccc
Q 016708 146 LSHMAQWESARLEAEARLVRESKLRSHSFQL 176 (384)
Q Consensus 146 ls~~aqwesar~e~e~R~~re~k~~~~s~~~ 176 (384)
..|..|+..+++|+..+++.||+.++.
T Consensus 74 ----~~W~~Ia~~l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 74 ----SKWSVIAKLIPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp ----SCHHHHTTTSTTCCHHHHHHHHHHTTG
T ss_pred ----cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 359999999999999999999987554
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.54 E-value=4.7e-16 Score=129.79 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCcccccCCCCCccccc
Q 016708 67 RGKFSLQEEQTIIQLHALLGN-RWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQNKNSAN 145 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p~~~k~~~~~~~~~~~~~k~~~~ 145 (384)
+++||+|||++|+++|.+||. +|..||..||+||..||+.||.++|.+.+.+..|++++...+..++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~--------- 71 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEY--------- 71 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHT---------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHh---------
Confidence 589999999999999999995 8999999999999999999999999999999999877665444333222
Q ss_pred cccccccchhhhhHHHHHHHHhhcccccc
Q 016708 146 LSHMAQWESARLEAEARLVRESKLRSHSF 174 (384)
Q Consensus 146 ls~~aqwesar~e~e~R~~re~k~~~~s~ 174 (384)
...|..|+..+++|+..+++.||...
T Consensus 72 ---G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 72 ---GPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp ---CSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ---CcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 23699999999999999999999863
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=8.4e-15 Score=107.59 Aligned_cols=49 Identities=29% Similarity=0.439 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC--CCCHHHHHHHHHHHhHH
Q 016708 66 KRGKFSLQEEQTIIQLHALLG-NRWSAIATHLP--KRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcKnRW~~~Lkk 114 (384)
++++||+|||++|+++|.+|| ++|..||..|+ +||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 79999999999 99999999999999875
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=7.7e-15 Score=110.61 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
.+.+++++||+|||++|+++|++|| ++|.+||++||+||+.||++||+.+|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 8999999999999999999999988754
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.5e-16 Score=118.06 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=53.8
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCC
Q 016708 7 CDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGK 69 (384)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~ 69 (384)
+..|.+++++||+|||++|+++|++||. +|..||. +. +|+++||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 3579999999999999999999999996 9999977 44 89999999999999999877653
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=113.65 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhc
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG------NRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
+|.+++++||.|||++|++++.+|| ++|.+||.+|++||+.||++||+.+|.+.++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999 789999999999999999999999998876554
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=3.9e-15 Score=109.42 Aligned_cols=50 Identities=24% Similarity=0.497 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccC-ccCccccccccccccC
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGL-QRCGKSCRLRWTNYLR 62 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~-~Rt~kqCr~Rw~n~L~ 62 (384)
++++||+|||++|+++|++||.++|..||..++. +|+++||++||.++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999666543 7999999999999886
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-15 Score=117.67 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=54.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCcccccccccCccCccccccccccccCCCCCCCC
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGH-----GSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGK 69 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~-----~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~ 69 (384)
.+|.+++++||+|||++|+++|.+||. .+|..||+.++ +|+++||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 368999999999999999999999996 68999966655 99999999999999998877764
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=5.7e-15 Score=110.70 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=47.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccccc
Q 016708 10 VGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
..+.+++||+|||++|+++|++||.++|..||..++.+|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4577899999999999999999998899999777666999999999999875
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.47 E-value=4.2e-14 Score=108.24 Aligned_cols=51 Identities=27% Similarity=0.481 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC--CCCHHHHHHHHHHHhHHH
Q 016708 65 IKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLP--KRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcKnRW~~~Lkk~ 115 (384)
.++++||+|||++|+++|++|| ++|..||++++ +||+.|||+||.+++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 5789999999999999999999 68999999876 999999999999988764
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=7.7e-14 Score=104.54 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhhcCC-CCCHHHHHHHHHHHh
Q 016708 63 PDIKRGKFSLQEEQTIIQLHALLG-NRWSAIATHLP-KRTDNEIKNYWNTHL 112 (384)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcKnRW~~~L 112 (384)
..+.+++||+|||++|+++|++|| ++|.+||++|+ +||+.||++||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998764
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=9.7e-15 Score=118.59 Aligned_cols=57 Identities=23% Similarity=0.245 Sum_probs=53.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 59 NYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 59 n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
..+.|.+++++||.|||++|++++.+||++|..||.+|||||++||++||+.+|++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357789999999999999999999999999999999999999999999999988764
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.41 E-value=8.1e-14 Score=116.50 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=68.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---CccCcccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAG---LQRCGKSCRLRWTNYL-----RPDIKRGKFSLQEEQT-I 78 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~---~~Rt~kqCr~Rw~n~L-----~p~ikrg~WT~EED~~-L 78 (384)
.+...++++||+|||++|+++|++||.++|..|+..++ ++||+.+|++||.+++ .|.+++|.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45778999999999999999999999999999977553 7999999999999998 6999999888877766 8
Q ss_pred HHHHHHhC
Q 016708 79 IQLHALLG 86 (384)
Q Consensus 79 l~lv~~~G 86 (384)
++|++.++
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.9e-14 Score=111.12 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCC
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKR 67 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikr 67 (384)
..|.+++++||+|||++|+++|.+||. +|..||. ++++|++.||+.||.+||++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999996 9999965 556999999999999999877665
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.39 E-value=1.5e-13 Score=110.45 Aligned_cols=70 Identities=21% Similarity=0.455 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc---ccCccCcccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 016708 15 GPWTPEEDQKLLAYIEEHGHGSWRALPAK---AGLQRCGKSCRLRWTNYL-----RPDIKRG-KFSLQEEQTIIQLHAL 84 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~yG~~~W~~Iaa~---~~~~Rt~kqCr~Rw~n~L-----~p~ikrg-~WT~EED~~Ll~lv~~ 84 (384)
++||+|||++|+++|++||.++|..|+.. .+++||+.+|++||.|+| .|.++++ +..++...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999664 357999999999999998 5776665 6788888999998875
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=107.79 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=47.8
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCC
Q 016708 7 CDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRG 68 (384)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg 68 (384)
...|.+++++||+|||++|+++|++||. +|..||..+ +|++.||+.||. .|....+.|
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~-~L~~~~~~G 73 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCR-LMKDTCNTG 73 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHH-HCSCCCSCC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHH-HHHHHccCC
Confidence 4579999999999999999999999996 699996666 899999999997 465555443
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=8.8e-13 Score=103.46 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLG----NRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
++.+.+++||.|||++|++++++|| ++|.+||++|||||.+||++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 689999999999999999999998765
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=102.45 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 64 DIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
...+++||.|||++|++++++||++|.+||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999754
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=102.45 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=47.0
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccc
Q 016708 7 CDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNY 60 (384)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~ 60 (384)
+.+...++++||+|||++|+++|++|| ++|..||..++ +|++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345677899999999999999999999 79999977666 89999999999998
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=1.6e-11 Score=104.97 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=50.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhhc----CCCCCHHHHHHHHHHHhHHH
Q 016708 61 LRPDIKRGKFSLQEEQTIIQLHALLGN-RWSAIATH----LPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 61 L~p~ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcKnRW~~~Lkk~ 115 (384)
+.+..++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 566788999999999999999999996 99999998 48999999999999999854
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.19 E-value=2.5e-11 Score=97.43 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Chhhhhhc----CCCCCHHHHHHHHHHHhHHHH
Q 016708 68 GKFSLQEEQTIIQLHALLGN-RWSAIATH----LPKRTDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcKnRW~~~Lkk~l 116 (384)
++||+|||++|+++|++||. +|+.|++. |++||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999995 899999999999999987553
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.81 E-value=2e-12 Score=104.91 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=49.3
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccCC
Q 016708 7 CDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRP 63 (384)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p 63 (384)
...|.+++|+||+|||++|+++|.+||. +|..||.. +++|++.||+.||.++|+.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~-l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARM-VGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 3468899999999999999999999996 89999655 5599999999999999874
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.18 E-value=1e-11 Score=116.81 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=49.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hhhhhhcCCCCCHHHHHHHHHHHhHHHHhh
Q 016708 63 PDIKRGKFSLQEEQTIIQLHALLGNR------WSAIATHLPKRTDNEIKNYWNTHLKKRLAK 118 (384)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k 118 (384)
+.+++++||+|||++|+++|+++|++ |..||++|||||++|||+||+.+|++++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~ 65 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY 65 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc
Confidence 45788999999999999999999975 999999999999999999999999998763
No 52
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=3.3e-11 Score=98.64 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHhHHH-HhhcCCCC
Q 016708 66 KRGKFSLQEEQTIIQLHALLG----NRWSAIATHLPKRTDNEIKNYWNTHLKKR-LAKMGIDP 123 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~-l~k~~~~p 123 (384)
.+++||.|||++|++++++|| ++|.+||.+|||||.++|++||+.+++.. ..+.|..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467999999999999999996 68999999999999999999999988765 34455444
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.17 E-value=4.5e-11 Score=99.90 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=48.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhhcC----CCCCHHHHHHHHHHHhHHH
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLGN-RWSAIATHL----PKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~l----pgRT~~qcKnRW~~~Lkk~ 115 (384)
.+..++++||.|||+.|+++|++||. +|+.|++.+ ++||+.+||+||.++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34578899999999999999999996 999999965 8999999999999988754
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.14 E-value=6.8e-12 Score=98.40 Aligned_cols=55 Identities=13% Similarity=0.346 Sum_probs=48.1
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHHhC---CCCcccccccccCccCccccccccccccC
Q 016708 7 CDKVGLKKGPWTPEEDQKLLAYIEEHG---HGSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 7 ~~k~~lkKg~WT~EEDe~L~~~V~~yG---~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
.+++.+.+++||+|||++|+++|.+|| ..+|..||+.+ ++|+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999 35899996555 59999999999998765
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=6.1e-11 Score=89.89 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhh---hcCCCCCHHHHHHHHHHHhHH
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIA---THLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~qcKnRW~~~Lkk 114 (384)
++.+||+|||+.|+++|++||.+|..|+ .++++||...+|+||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 578899999999999988764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.11 E-value=4.8e-11 Score=102.13 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhhc----CCCCCHHHHHHHHHHHhHHH
Q 016708 63 PDIKRGKFSLQEEQTIIQLHALLGN-RWSAIATH----LPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~qcKnRW~~~Lkk~ 115 (384)
...++++||.|||+.|+++|++||. +|..|++. |++||+.+||+||.++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999995 99999986 48999999999999998754
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=3e-09 Score=80.26 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
..++||+||++++++++.+||.+|..||.+||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=87.55 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=60.8
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcC-----CCCCHHHHHHHHHHHhHHHHhhcC
Q 016708 50 GKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHL-----PKRTDNEIKNYWNTHLKKRLAKMG 120 (384)
Q Consensus 50 ~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcKnRW~~~Lkk~l~k~~ 120 (384)
..=|.++|.++|.+ .+||.||++.|++|+++|+.+|..|+..+ ++||..++|+||+.+.++.++..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34578999999986 89999999999999999999999999998 589999999999999988887764
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=3.4e-09 Score=82.78 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCC
Q 016708 64 DIKRGKFSLQEEQTIIQLHALLG----NRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGI 121 (384)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~ 121 (384)
..+.+.||.||+++|.+++++|+ ++|.+||.+| |||..+|++||+.+.+......|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence 45678999999999999999997 6799999998 999999999998886664333343
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.80 E-value=6.2e-10 Score=91.08 Aligned_cols=47 Identities=11% Similarity=0.317 Sum_probs=41.4
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCCcccccccccCccCcccccccccccc
Q 016708 14 KGPWTPEEDQKLLAYIEEHG---HGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG---~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
+++||+|||++|++++.+|| ...|..||+.++ +|+.+||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 67899999999999999997 457999966555 999999999998864
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.64 E-value=6.3e-09 Score=78.81 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=44.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccc--cccCccCccccccccccccC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPA--KAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa--~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
-++.+||+|||+.|++.|++||. +|..|+. .++.+|+...+.+||.+..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 36889999999999999999997 9999964 46679999999999998765
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.59 E-value=4.3e-08 Score=91.51 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
..++||.||+.++++++.+||++|..||+.|++||..|||++|+.++++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999877654
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=3.4e-08 Score=74.40 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccccc
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
++..-..++||+|||+++.+++.+|| .+|..|| .++++|+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia-~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIA-SYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHH-HHCTTSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhc
Confidence 44455679999999999999999999 5999996 6666999999999996543
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=4e-08 Score=76.70 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccCccCccccccccccccC
Q 016708 10 VGLKKGPWTPEEDQKLLAYIEEHGH---GSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 10 ~~lkKg~WT~EEDe~L~~~V~~yG~---~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
...+++.||.|||++|.+++.+|+. ..|..||+.+ +|+.++|+.||+.++.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 3456789999999999999999984 4699997775 6999999999987643
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.34 E-value=7.9e-08 Score=72.19 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccccccCccCccccccccccccC
Q 016708 14 KGPWTPEEDQKLLAYIEEH--------GHGSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~y--------G~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
|.+||+|||++|+++|.+| |..-|..|++...++++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 545699997746679999999999999875
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.32 E-value=4.1e-07 Score=71.17 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CChhhhhhcCCCCCHHHHHHHHHHHh
Q 016708 67 RGKFSLQEEQTIIQLHALLG----NRWSAIATHLPKRTDNEIKNYWNTHL 112 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcKnRW~~~L 112 (384)
...||.+|+++|.+++..|+ .+|.+||..+||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999997 46999999999999999999997763
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.30 E-value=6.6e-07 Score=67.16 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhhhhh-cCCCCCHHHHHHHHHHHhH
Q 016708 67 RGKFSLQEEQTIIQLHALL--------GNR-WSAIAT-HLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~qcKnRW~~~Lk 113 (384)
|.+||+|||+.|+++|.++ |++ |..|++ .+|.+|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999987764
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.26 E-value=5e-07 Score=92.83 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 68 GKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
..||.||-.++++++.+||.+|..||..++.||..|||++|..+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999998654
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.03 E-value=9.1e-07 Score=69.19 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=41.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcccccccccCccCccccccccccccC
Q 016708 14 KGPWTPEEDQKLLAYIEEHGH---GSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~---~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
...||.||+++|..++..|+. +.|..||+.++ +|+..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457999999999999999975 46999976665 8999999999987754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.97 E-value=1.5e-06 Score=81.13 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=43.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccccccC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
....+||+||++++++++.+|| ++|..||..+ ++|+..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~V-gTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVI-GNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHH-SSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999 5999996655 49999999999998765
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.2e-05 Score=60.90 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhh-cCCCCCHHHHHHHHHHH
Q 016708 62 RPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAT-HLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcKnRW~~~ 111 (384)
.|.++...||+||-++..+.+.+||.+|..|++ .|+.||..+|..+|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 467888899999999999999999999999999 59999999999988644
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.91 E-value=1.9e-05 Score=63.85 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhhcCCCCCHHHHHHHHHHHhHHHHh
Q 016708 69 KFSLQEEQTIIQLHALLGN---RWSAIATHLPKRTDNEIKNYWNTHLKKRLA 117 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~ 117 (384)
.||.|||+.||..+++-|. .|..||+.|.+|+.+||++||+.+++-.-+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999986 799999999999999999999998776543
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.74 E-value=6.4e-06 Score=64.26 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhhhhhcCCCCCHHHHHHHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLGN----RWSAIATHLPKRTDNEIKNYWN 109 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcKnRW~ 109 (384)
...||.+|+++|.++.++|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 7999999999999999999874
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.87 E-value=5.3e-06 Score=63.69 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 69 KFSLQEEQTIIQLHALLGN---RWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
.||.|||+.|+..+++-|. .|..||..| +|+++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999988764
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.59 E-value=0.00016 Score=58.94 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=52.1
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCC-----CCCHHHHHHHHHHHhHHHHhhc
Q 016708 55 LRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLP-----KRTDNEIKNYWNTHLKKRLAKM 119 (384)
Q Consensus 55 ~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lp-----gRT~~qcKnRW~~~Lkk~l~k~ 119 (384)
+.|..+|. ...||.||...|++|+++|.-+|..|+..+. .||-.++|.||+.+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 44555565 3689999999999999999999999998763 7999999999999988877765
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.58 E-value=0.00014 Score=70.92 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccc-------ccccc----------------------------
Q 016708 15 GPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCR-------LRWTN---------------------------- 59 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr-------~Rw~n---------------------------- 59 (384)
+.||..+...++.++.+||..+|..||+.++ +++...++ +||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999988886 67765543 22210
Q ss_pred ---------------ccCCCCCCCCCCHHHHHHHHHHHHHhCC----Chhhhhh------------cCCCCCHHHHHHHH
Q 016708 60 ---------------YLRPDIKRGKFSLQEEQTIIQLHALLGN----RWSAIAT------------HLPKRTDNEIKNYW 108 (384)
Q Consensus 60 ---------------~L~p~ikrg~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~qcKnRW 108 (384)
+..+..+...||++||..||-.+.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0012234568999999999999999994 5999962 44579999999999
Q ss_pred HHHhHHHHhh
Q 016708 109 NTHLKKRLAK 118 (384)
Q Consensus 109 ~~~Lkk~l~k 118 (384)
+++++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998765443
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.48 E-value=2.1e-05 Score=61.30 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=37.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CcccccccccCccCccccccccc
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHG---SWRALPAKAGLQRCGKSCRLRWT 58 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~---~W~~Iaa~~~~~Rt~kqCr~Rw~ 58 (384)
...||.||+++|..++.+|+.. .|.+||+.++ +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999754 7999966665 899999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=4.6e-05 Score=57.59 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=44.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccc
Q 016708 8 DKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTN 59 (384)
Q Consensus 8 ~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n 59 (384)
-.|.++...||+||-++..+++.+||. +|..|++.+.+.|+..||..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence 468888999999999999999999995 999996546679999999887754
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.36 E-value=0.00026 Score=57.71 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTH 111 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~ 111 (384)
...||+||.++..+...+||.+|..||..||+||..+|-.+|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988654
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.32 E-value=0.00041 Score=53.50 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhh-cCCCCCHHHHHHHHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLGNRWSAIAT-HLPKRTDNEIKNYWNT 110 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcKnRW~~ 110 (384)
...||+||-.+..+.+.+||.+|..|++ .||+||..+|..+|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999998874
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.94 E-value=0.00017 Score=58.85 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=43.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----CccCccccccccccccC
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAG----LQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~----~~Rt~kqCr~Rw~n~L~ 62 (384)
|+..+||.||++.|++++++|+. .|..|+.+.. ++|+..+.+.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 45589999999999999999995 9999988874 47999999999987543
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.83 E-value=0.00035 Score=71.88 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=42.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccccc
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L 61 (384)
....+||.||-+++++++.+|| ++|..||..++ .|+..||+..|.+|-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3468999999999999999999 59999977766 899999999987653
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.82 E-value=0.00079 Score=53.36 Aligned_cols=49 Identities=16% Similarity=0.405 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChhhhhhcCC----CCCHHHHHHHHHHHhHHH
Q 016708 67 RGKFSLQEEQTIIQLHALLG----------NRWSAIATHLP----KRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~qcKnRW~~~Lkk~ 115 (384)
...||.+|-.+||++...+. ..|..||..|. .||+.||+.+|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999987632 14999999874 699999999999876653
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.59 E-value=0.00014 Score=57.81 Aligned_cols=49 Identities=22% Similarity=0.617 Sum_probs=40.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cCccCcccccccccccc
Q 016708 13 KKGPWTPEEDQKLLAYIEEHGH---------GSWRALPAKA---GLQRCGKSCRLRWTNYL 61 (384)
Q Consensus 13 kKg~WT~EEDe~L~~~V~~yG~---------~~W~~Iaa~~---~~~Rt~kqCr~Rw~n~L 61 (384)
+...||.+|-.+|+++...+.. ..|..||..| |-.|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999986421 1599998875 36899999999998764
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.42 E-value=0.001 Score=51.29 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccccccccc
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTN 59 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n 59 (384)
...||+||-++..+++.+||. +|..|+..+.+.|+..+|..-|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 568999999999999999995 999996546779999999887753
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.32 E-value=0.0084 Score=54.53 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhhhhhc--C------------CCCCHHHHHHHHHHHhHH
Q 016708 69 KFSLQEEQTIIQLHALLG-NRWSAIATH--L------------PKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~--l------------pgRT~~qcKnRW~~~Lkk 114 (384)
.||.+||..||..+.+|| ++|..|... | ..++..++..|-.++|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 899999751 1 125677899998877664
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.06 E-value=0.001 Score=51.11 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCcccccccccCccCccccccccccccC
Q 016708 14 KGPWTPEEDQKLLAYIEEHGH--GSWRALPAKAGLQRCGKSCRLRWTNYLR 62 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~--~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~ 62 (384)
--.||.|||..|+..+++.|. ..|..||.++ +|++.|+.+||+..++
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 347999999999999999986 3799997666 7999999999987543
No 88
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.03 E-value=0.0018 Score=52.64 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=38.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccccccc
Q 016708 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWT 58 (384)
Q Consensus 14 Kg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~ 58 (384)
...||+||.++..+.+.+|| .+|..| +.+.+.|+..+|.+-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~I-a~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLI-ASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHH-HHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHH-HHHcCCCCHHHHHHHHh
Confidence 46799999999999999999 599999 56667999999998774
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.60 E-value=0.033 Score=55.64 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccCccccc-------cccccc---------------------------
Q 016708 15 GPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCR-------LRWTNY--------------------------- 60 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr-------~Rw~n~--------------------------- 60 (384)
+.||.-+=..++.++.+||..+-..||..+.++++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999888999988886556664443 111100
Q ss_pred -------------cC---CCC--CCCCCCHHHHHHHHHHHHHhC----CChhhhhhc------------CCCCCHHHHHH
Q 016708 61 -------------LR---PDI--KRGKFSLQEEQTIIQLHALLG----NRWSAIATH------------LPKRTDNEIKN 106 (384)
Q Consensus 61 -------------L~---p~i--krg~WT~EED~~Ll~lv~~~G----~kW~~IA~~------------lpgRT~~qcKn 106 (384)
|. +.. +...||++||..||-++.+|| +.|..|-.. +..||..+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 10 111 345799999999999999999 459999432 45799999999
Q ss_pred HHHHHhHHHHhh
Q 016708 107 YWNTHLKKRLAK 118 (384)
Q Consensus 107 RW~~~Lkk~l~k 118 (384)
|.+.+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999998765444
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.37 E-value=0.0043 Score=50.19 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=40.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC--CCcccccccccCccCcccccccccc
Q 016708 11 GLKKGPWTPEEDQKLLAYIEEHGH--GSWRALPAKAGLQRCGKSCRLRWTN 59 (384)
Q Consensus 11 ~lkKg~WT~EEDe~L~~~V~~yG~--~~W~~Iaa~~~~~Rt~kqCr~Rw~n 59 (384)
+-+--.||.|||..|+...++.|. ..|..||.+++ +|++.|+.+|++.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 334457999999999999999975 47999977776 8999999999965
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.04 E-value=0.039 Score=50.05 Aligned_cols=38 Identities=37% Similarity=0.611 Sum_probs=31.8
Q ss_pred CCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccc
Q 016708 4 SPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALP 41 (384)
Q Consensus 4 ~~c~~k~~lkKg~WT~EEDe~L~~~V~~yG~~~W~~Ia 41 (384)
-|++.++.-..-.||.+||..|+..|.+||.++|..|-
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 35555665556679999999999999999999999993
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.21 E-value=0.041 Score=44.67 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=41.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----CccCcccccccccccc
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAG----LQRCGKSCRLRWTNYL 61 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~----~~Rt~kqCr~Rw~n~L 61 (384)
|+...||.||...|.+++++|.- .|-.|+.+.. ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999995 9999988764 3688888888887654
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.76 E-value=0.28 Score=47.68 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 67 RGKFSLQEEQTIIQLHALLG-NRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
.+.||..+....+.++.+|| ..|..||..|+|+|..+|+.+...+..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 34799999999999999999 5799999999999999998887777654
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.02 E-value=0.64 Score=35.12 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---hhhhhhcC--CCCCHHHHHHHHHHH
Q 016708 65 IKRGKFSLQEEQTIIQLHALLGNR---WSAIATHL--PKRTDNEIKNYWNTH 111 (384)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~qcKnRW~~~ 111 (384)
..+-.||+|.-++.++++.++|.. +..|-+.| +|.|..+|+.+.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999954 78898876 589999999998765
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.83 E-value=0.31 Score=46.63 Aligned_cols=26 Identities=46% Similarity=0.815 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccc
Q 016708 15 GPWTPEEDQKLLAYIEEHGHGSWRAL 40 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~yG~~~W~~I 40 (384)
..|+.+||..|+..|.+||.++|..|
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~I 194 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQI 194 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHH
Confidence 45999999999999999999999999
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=76.25 E-value=1.1 Score=33.91 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=31.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCC---ccccccccc-CccCccccccccc
Q 016708 12 LKKGPWTPEEDQKLLAYIEEHGHGS---WRALPAKAG-LQRCGKSCRLRWT 58 (384)
Q Consensus 12 lkKg~WT~EEDe~L~~~V~~yG~~~---W~~Iaa~~~-~~Rt~kqCr~Rw~ 58 (384)
..+-.||+|..++.+++|++.|. + ++.|-..|+ ++.|..++.-+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 35778999999999999999994 4 456644443 3455555554443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=66.02 E-value=12 Score=35.53 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChhhhhh--cCCCCCHHHHHHHHHHHhHH
Q 016708 67 RGKFSLQEEQTIIQLHALLG---NRWSAIAT--HLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G---~kW~~IA~--~lpgRT~~qcKnRW~~~Lkk 114 (384)
++.||..|-..|++.+.+|| .+|..|+. .|+.++...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999986 47889999888888766543
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.24 E-value=24 Score=35.04 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhhhhhcCC-CCCHHHHHHHHHHHhH
Q 016708 68 GKFSLQEEQTIIQLHALLG-NRWSAIATHLP-KRTDNEIKNYWNTHLK 113 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcKnRW~~~Lk 113 (384)
+.||.-+=..+|.+..+|| ..-..||..|. ++|..+|+.+...+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4688888899999999999 56999999998 9999999976654443
No 99
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.10 E-value=31 Score=26.28 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHh---HHHHhhcC
Q 016708 73 QEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHL---KKRLAKMG 120 (384)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~L---kk~l~k~~ 120 (384)
+.++.++.++...|-.-..||..| |-+...|+.+....+ ++.+.+.+
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666777667788899999999 788888888776544 34444443
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.63 E-value=28 Score=24.54 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 73 QEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+.+..++.++-..|-.+..||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666667667789999999999 77888998877665444
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.19 E-value=32 Score=27.52 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCCC----HHHHHHHHHHHhHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKRT----DNEIKNYWNTHLKKR 115 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcKnRW~~~Lkk~ 115 (384)
+|..+|.+.|+ .|..||..|.--. ..++|..|..+|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46666777763 6999999995432 467899898887764
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=44.10 E-value=14 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
+|..+|.+.|+ .|..||..|.-.....+|..|..+|.+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 46677777774 6999999986545788999998887664
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.71 E-value=5.4 Score=33.48 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=32.9
Q ss_pred CcccccccccCccCc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 016708 36 SWRALPAKAGLQRCG----KSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHA 83 (384)
Q Consensus 36 ~W~~Iaa~~~~~Rt~----kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~ 83 (384)
.|..|+..++...+. ...+..|..||.|- ..++++|-..|.+-+.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 799999998855433 35688899988762 2378888888876654
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=43.19 E-value=27 Score=28.65 Aligned_cols=39 Identities=13% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCCC----HHHHHHHHHHHhHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKRT----DNEIKNYWNTHLKKR 115 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcKnRW~~~Lkk~ 115 (384)
+|..+|.+.|+ .|..||..|.--. ..++|..|..+|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46677777774 6999999985322 567899998887764
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.57 E-value=34 Score=28.36 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCCC----HHHHHHHHHHHhHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKRT----DNEIKNYWNTHLKKR 115 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcKnRW~~~Lkk~ 115 (384)
+|..+|.++|+ .|..||..|.--+ ..++|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46667777763 6999999985432 468899999888864
No 106
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=41.54 E-value=16 Score=32.42 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=19.7
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCC
Q 016708 10 VGLKKGPWTPEEDQKLL--------AYIEEHGH 34 (384)
Q Consensus 10 ~~lkKg~WT~EEDe~L~--------~~V~~yG~ 34 (384)
|.-.+|-||+|+|+.|+ ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 45568999999999875 57778873
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=40.38 E-value=19 Score=30.07 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=30.4
Q ss_pred HHHHHHHhCC--------ChhhhhhcCCCCCHHHHHHHHHHHhHHHHh
Q 016708 78 IIQLHALLGN--------RWSAIATHLPKRTDNEIKNYWNTHLKKRLA 117 (384)
Q Consensus 78 Ll~lv~~~G~--------kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~ 117 (384)
|..+|.+.|+ .|..||..|.--....+|..|..+|.+--.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 5556666653 599999998655589999999999887644
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.36 E-value=37 Score=24.61 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH----hCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 73 QEEQTIIQLHAL----LGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 73 EED~~Ll~lv~~----~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
+.+..++.+.-. .|..+..||..+ |-+...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 445555656554 577899999999 889999998776665443
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.36 E-value=36 Score=28.11 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCCC----HHHHHHHHHHHhHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKRT----DNEIKNYWNTHLKKR 115 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgRT----~~qcKnRW~~~Lkk~ 115 (384)
+|..+|.++|+ .|..|+..|.-.. ...+|..|..+|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46677777774 6999999985322 467899898887764
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.54 E-value=5.4 Score=32.88 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccCccccccccccccCC
Q 016708 24 KLLAYIEEHGH-------GSWRALPAKAGLQRCGKSCRLRWTNYLRP 63 (384)
Q Consensus 24 ~L~~~V~~yG~-------~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p 63 (384)
+|..+|.+.|. +.|..|+..++... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777777762 37999999888555 77788888888765
No 111
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.18 E-value=38 Score=24.17 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH----HhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 73 QEEQTIIQLHA----LLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 73 EED~~Ll~lv~----~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+.++.++.+.- ..|-.+..||..+ |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555554 3477899999999 88999999887666544
No 112
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.87 E-value=62 Score=26.78 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCC--C---CHHHHHHHHHHHhHHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPK--R---TDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpg--R---T~~qcKnRW~~~Lkk~l 116 (384)
+|..+|.++|+ .|..||..|.- . ....+|..|..+|.+--
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 46677777774 69999999852 2 25789999998888753
No 113
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=31.47 E-value=9.3 Score=30.87 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccC----ccccccccccccCC
Q 016708 24 KLLAYIEEHGH-------GSWRALPAKAGLQRC----GKSCRLRWTNYLRP 63 (384)
Q Consensus 24 ~L~~~V~~yG~-------~~W~~Iaa~~~~~Rt----~kqCr~Rw~n~L~p 63 (384)
+|..+|.+.|. +.|.+|+..++...+ +.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777652 379999998885432 35678888888876
No 114
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=30.64 E-value=54 Score=27.89 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------ChhhhhhcCCCC-----CHHHHHHHHHHHhHHHH
Q 016708 77 TIIQLHALLGN--------RWSAIATHLPKR-----TDNEIKNYWNTHLKKRL 116 (384)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgR-----T~~qcKnRW~~~Lkk~l 116 (384)
+|..+|.+.|+ .|..||..|.-- ....+|..|..+|.+--
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 46677777774 699999998531 25689999998887753
No 115
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.78 E-value=1.9e+02 Score=22.71 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccCcccc---cccccccc--CCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 016708 15 GPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSC---RLRWTNYL--RPDIKRGKFSLQEEQTIIQLHALLGNRW 89 (384)
Q Consensus 15 g~WT~EEDe~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqC---r~Rw~n~L--~p~ikrg~WT~EED~~Ll~lv~~~G~kW 89 (384)
...|.++-..++.++. -|. .-.+||..++. +...+ ..||..+- .........+.+++..|+++...-.-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgi--s~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKISR--SRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 4578888888888774 463 67888777763 33322 22332221 1111223588898888888733222334
Q ss_pred hhhhhcCCC-CCHHHHHH
Q 016708 90 SAIATHLPK-RTDNEIKN 106 (384)
Q Consensus 90 ~~IA~~lpg-RT~~qcKn 106 (384)
..|+..|+- -+...|..
T Consensus 81 ~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 81 RDIRNELQLSASKRTILN 98 (141)
T ss_dssp HHHHHHTTCCSCHHHHHH
T ss_pred HHHHHHHCCCccHHHHHH
Confidence 678877732 45555544
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=29.50 E-value=26 Score=27.50 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=26.0
Q ss_pred HHHHHHHHhC--------CChhhhhhcCCCC----CHHHHHHHHHHHhHH
Q 016708 77 TIIQLHALLG--------NRWSAIATHLPKR----TDNEIKNYWNTHLKK 114 (384)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpgR----T~~qcKnRW~~~Lkk 114 (384)
+|..+|.+.| +.|.+||..|.-- ...++|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3666666665 3699999987531 256788888777654
No 117
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=27.39 E-value=34 Score=30.30 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=26.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 63 PDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
|.-..|-||.|+|+.|. ++.=..|.+.........+..||+.+-...
T Consensus 110 P~N~pGIWT~eDDe~L~------s~d~~dikrL~kKHG~erie~R~~FLe~~~ 156 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK------SNDQEQIRKLVKKHGTGRMEMRKRFFEKDL 156 (168)
T ss_dssp CTTCTTCCCHHHHHHHH------SCCHHHHHHHHHHHCHHHHHHHHHHHCC--
T ss_pred CCCCCCCCChhhHHHHH------cCCHHHHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 56788999999999887 222222332222224455666665554433
No 118
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.12 E-value=1e+02 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 70 FSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
+|+.|- .++.++ ..|-.-..||..+ +-+...|+.+....++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 444444 445555 6678899999999 7788888887765543
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=25.12 E-value=63 Score=26.88 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=24.0
Q ss_pred HhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 84 LLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
..|-....||..+ |-+...|+.+....+++-
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3467799999999 778889999887765543
No 120
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=25.05 E-value=89 Score=25.02 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHH
Q 016708 71 SLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKN 106 (384)
Q Consensus 71 T~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKn 106 (384)
+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 666665544
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.93 E-value=1.2e+02 Score=23.27 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 66 KRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
.....|+.|-+.|.-+ . .|..-..||..| +-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3446888777765544 4 788899999999 78889999877665443
No 122
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.44 E-value=1e+02 Score=23.65 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 69 KFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
..|+.|-+.|. ++ ..|..-..||..| +-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665544 45 7788899999999 77999999877665443
No 123
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.56 E-value=1e+02 Score=25.73 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=25.3
Q ss_pred HHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 016708 81 LHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR 115 (384)
Q Consensus 81 lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~ 115 (384)
+....|-....||..+ |-+...|+.+....+++-
T Consensus 151 l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 151 LRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3334467899999999 788999998877665443
No 124
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.66 E-value=1e+02 Score=22.89 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 69 KFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
..|+.|-+.| .++ ..|..-.+||..| +-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4666665554 444 5788899999999 78888998876655433
No 125
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=21.95 E-value=88 Score=23.46 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH----hCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 73 QEEQTIIQLHAL----LGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 73 EED~~Ll~lv~~----~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+.++.++.+.-. .|-.+..||..+ |-+...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345555555554 567899999999 88999999876655443
No 126
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.94 E-value=26 Score=29.91 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=34.8
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccC----ccccccccccccCC--CCCCCCCCHHHHHHHH
Q 016708 24 KLLAYIEEHGH-------GSWRALPAKAGLQRC----GKSCRLRWTNYLRP--DIKRGKFSLQEEQTII 79 (384)
Q Consensus 24 ~L~~~V~~yG~-------~~W~~Iaa~~~~~Rt----~kqCr~Rw~n~L~p--~ikrg~WT~EED~~Ll 79 (384)
+|..+|.+.|. +.|.+|+..++...+ +.+.+..|.+||.| ...+|.=.++|-+.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 46666666652 379999988885442 34677888888876 2334444455444433
No 127
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.57 E-value=1.5e+02 Score=20.96 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHHHHhhcCCCC
Q 016708 73 QEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDP 123 (384)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk~l~k~~~~p 123 (384)
-|.+.|.++...++++..+.|+.|+- +. ..|.+++++.++.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGi-sr--------~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGI-DL--------SNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTC-CH--------HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCc-CH--------HHHHHHHHHhCCCC
Confidence 47778889999999999999998842 22 23445667776654
No 128
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.30 E-value=1.3e+02 Score=20.32 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhHH
Q 016708 75 EQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKK 114 (384)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lkk 114 (384)
+..++.+ -..|-.-.+||..| +-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4556666 35677889999999 77999999877665443
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.95 E-value=1.2e+02 Score=21.17 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhhcCCCCCHHHHHHHHHHHhH
Q 016708 68 GKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLK 113 (384)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcKnRW~~~Lk 113 (384)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+....++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3467666655544 4 5677899999999 7788889887765543
No 130
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=20.71 E-value=21 Score=28.33 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCC-------CCCCCCHHHHHHHH
Q 016708 22 DQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDI-------KRGKFSLQEEQTII 79 (384)
Q Consensus 22 De~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~i-------krg~WT~EED~~Ll 79 (384)
+.+|.++|..|| |..+++.+. ..|.. .+|.+ ++.+|-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999998 888866554 22332 35554 46678877776654
No 131
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=20.61 E-value=94 Score=25.77 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=47.5
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCcccccccccCccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC----
Q 016708 14 KGPWTPEED--QKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGN---- 87 (384)
Q Consensus 14 Kg~WT~EED--e~L~~~V~~yG~~~W~~Iaa~~~~~Rt~kqCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~---- 87 (384)
+.+|.+.+. +.|.++.++.|. ....++. ++ +|. |+ =-+|..+|.++|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~-----------lD------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCE-----------LD------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEE-----------CC------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEe-----------cc------------HHHHHHHHHHcCcHHHh
Confidence 557887775 567778888885 4444422 22 111 11 1246677777774
Q ss_pred ----ChhhhhhcCCC--C---CHHHHHHHHHHHhHHH
Q 016708 88 ----RWSAIATHLPK--R---TDNEIKNYWNTHLKKR 115 (384)
Q Consensus 88 ----kW~~IA~~lpg--R---T~~qcKnRW~~~Lkk~ 115 (384)
.|..||..|.- - ....+|.+|..+|-+-
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 69999998842 1 2457888888777664
Done!