Query 016709
Match_columns 384
No_of_seqs 159 out of 438
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 3.8E-90 8.3E-95 694.0 35.8 378 7-384 112-508 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 1.2E-66 2.6E-71 506.4 34.5 288 54-341 1-295 (295)
3 KOG2569 G protein-coupled seve 100.0 1.3E-45 2.9E-50 355.7 5.2 300 36-351 106-427 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.8 1.4E-18 3.1E-23 166.0 26.1 244 74-329 2-256 (257)
5 KOG4290 Predicted membrane pro 99.4 4.3E-12 9.3E-17 123.1 13.3 266 53-336 114-399 (429)
6 PF06664 MIG-14_Wnt-bd: Wnt-bi 93.2 9 0.0002 37.3 26.0 181 75-269 36-229 (298)
7 PRK11715 inner membrane protei 82.6 16 0.00034 37.9 11.5 94 29-135 233-339 (436)
8 PF06123 CreD: Inner membrane 81.7 6.9 0.00015 40.4 8.6 95 29-135 226-333 (430)
9 PF08733 PalH: PalH/RIM21; In 81.3 63 0.0014 32.5 17.2 30 124-153 115-144 (348)
10 PF09437 Pombe_5TM: Pombe spec 80.7 0.23 4.9E-06 44.5 -2.2 141 50-200 36-187 (256)
11 PF01534 Frizzled: Frizzled/Sm 64.1 1.3E+02 0.0029 29.9 12.5 40 234-273 180-223 (328)
12 KOG2569 G protein-coupled seve 60.2 16 0.00035 37.1 5.1 59 76-134 327-393 (440)
13 KOG1734 Predicted RING-contain 60.0 46 0.00099 32.2 7.9 49 236-284 89-146 (328)
14 TIGR02908 CoxD_Bacillus cytoch 45.1 1.8E+02 0.004 24.3 9.6 48 125-172 50-97 (110)
15 PF11368 DUF3169: Protein of u 43.1 38 0.00082 32.1 4.6 15 273-287 7-21 (248)
16 PF10160 Tmemb_40: Predicted m 41.2 3.1E+02 0.0068 26.5 10.3 65 248-316 23-87 (261)
17 PRK10921 twin-arginine protein 35.0 4.1E+02 0.009 25.4 11.3 21 100-120 73-93 (258)
18 COG4736 CcoQ Cbb3-type cytochr 33.7 45 0.00097 24.8 2.7 19 323-341 19-37 (60)
19 PHA02680 ORF090 IMV phosphoryl 30.4 2.3E+02 0.005 22.7 6.3 54 138-194 21-74 (91)
20 PRK02983 lysS lysyl-tRNA synth 29.3 4.1E+02 0.0089 31.1 10.8 32 311-342 201-232 (1094)
21 PF01445 SH: Viral small hydro 29.2 1.6E+02 0.0035 21.3 4.8 36 89-124 1-37 (57)
22 PF06900 DUF1270: Protein of u 24.3 2.8E+02 0.006 20.0 6.5 44 273-327 3-46 (53)
23 PF13491 DUF4117: Domain of un 24.2 4.7E+02 0.01 22.6 10.5 67 80-146 41-108 (171)
24 PF03904 DUF334: Domain of unk 23.9 6.3E+02 0.014 23.9 10.6 27 266-292 142-168 (230)
25 PF06679 DUF1180: Protein of u 23.5 1.3E+02 0.0028 27.0 4.3 20 274-294 94-113 (163)
26 COG4393 Predicted membrane pro 22.8 8E+02 0.017 24.8 15.9 28 260-287 231-258 (405)
27 PF05620 DUF788: Protein of un 22.8 5.4E+02 0.012 22.8 10.0 28 312-339 47-74 (170)
28 PF06084 Cytomega_TRL10: Cytom 22.5 55 0.0012 27.5 1.7 22 334-355 123-144 (150)
29 PF11037 Musclin: Insulin-resi 22.4 65 0.0014 27.4 2.1 59 324-383 10-79 (132)
30 PRK12768 CysZ-like protein; Re 21.9 5.3E+02 0.012 24.4 8.5 29 311-339 62-90 (240)
31 CHL00043 cemA envelope membran 21.8 94 0.002 30.0 3.3 21 238-259 228-248 (261)
32 PF04942 CC: CC domain; Inter 21.7 98 0.0021 20.5 2.4 24 2-25 7-30 (36)
33 COG4452 CreD Inner membrane pr 20.5 2E+02 0.0043 29.4 5.3 16 119-134 317-332 (443)
34 PF03040 CemA: CemA family; I 20.3 88 0.0019 29.6 2.8 22 237-259 196-217 (230)
35 smart00207 TNF Tumour necrosis 20.1 2.2E+02 0.0047 23.8 4.9 36 49-84 20-59 (125)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.8e-90 Score=693.96 Aligned_cols=378 Identities=47% Similarity=0.801 Sum_probs=351.5
Q ss_pred cCccccCCCCCCCEEeecCCCCCCCcchhhhccccccccccc-ceeEEecccceEEEEEEEeCCCCCceEEEEEEEEEcC
Q 016709 7 LGWWKPSFLSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQI-SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNP 85 (384)
Q Consensus 7 ~~~~~~~~C~~g~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~V~~tG~Y~v~~~~C~~~~~~~~~~~~v~~~N~ 85 (384)
+..++.|.|++|++|++|+++||.||++.++.+++++.++++ +..|+|+|||+||+++..|+++.++.+.+|+++||||
T Consensus 112 ~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~~I~ktG~Y~v~~~~~~~s~~~~~~~~~v~wkNp 191 (518)
T KOG2568|consen 112 PDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAYPIKKTGYYCVYFISCDSSLESYKATGSVNWKNP 191 (518)
T ss_pred HhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceEEeccCcEEEEEEEeecCccccccccceEEEECC
Confidence 456899999999999999999999999999999999999998 9999999999999999999999888899999999999
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHH
Q 016709 86 DGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITL 165 (384)
Q Consensus 86 ~GyLsa~~~pll~~Y~~~~i~Y~~l~i~W~~~~~k~r~~l~~lh~~i~~vi~l~~le~~~~~~~y~~~n~~G~~~~~~~~ 165 (384)
||||||+++|+++||++|+++|.+++++|.+.++||||+++|+|++|+++++|+++|++++|.+|.+.|.+|.+|++.++
T Consensus 192 yGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~ 271 (518)
T KOG2568|consen 192 YGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTV 271 (518)
T ss_pred CCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccccccceeEeehhHHHHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHHH
Q 016709 166 WAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLD 245 (384)
Q Consensus 166 ~~~i~~~~k~~l~~~LlLlvs~Gygvvrp~L~~~~~kv~~l~v~yfv~s~~l~v~~~~~~~~d~s~~~~l~~~lpla~~~ 245 (384)
++++++++|++++|+|+|+||+|||||||+||+.+.|+..++++|+++++++++++.+++++|.++...+|.++|+|+++
T Consensus 272 ~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d 351 (518)
T KOG2568|consen 272 FASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNISELSSLLILFAALPLAILD 351 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889889999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHhHHHHHHHHHHHH
Q 016709 246 VCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWIIPAFWALLAFI 325 (384)
Q Consensus 246 ~~f~~Wi~~sL~~Ti~~Lk~~rq~~KL~~yr~f~~~l~~~vv~~v~~i~~~~~~~~~~~~~~~W~~~W~~~~~w~~l~f~ 325 (384)
++|++|||+||++|+++||.|||.+||+|||||.++++++|+++++|++++.++....+++++||.+|+++++|.+++|.
T Consensus 352 ~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~~l~~~ 431 (518)
T KOG2568|consen 352 AAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWPLLFFL 431 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987777678999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCcccccccCCCCcccc-ccccccCc-------cccchh----------cccCCCCchhhccC
Q 016709 326 LLVVICALWAPSRNPTRYAYSEEMGDDFDEE-TVSLTSSG-------IKNVEM----------AANLGEDLEEDKRE 384 (384)
Q Consensus 326 ~~~~i~~lwRPt~~n~~~a~s~e~~~d~d~e-~~~~~~~~-------~~~~~~----------~~~~~~~~~~~~~~ 384 (384)
++++||++||||+||+|||++++.+||.||| +-++.... ....|+ +-+.+||+||+|||
T Consensus 432 iLvvI~~LWrPS~nn~ryA~s~l~~d~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~dDle~~~~~ 508 (518)
T KOG2568|consen 432 ILVVIMFLWRPSQNNQRYAFSPLSDDDEEEEEEESLDLLESLTEGAKSRADKRKSLGKADPNKALNFEDDLEEVEEE 508 (518)
T ss_pred HHHHHHHhcCCCCCCcccccccccCCcchhhhhhhhhhcccccccCccccccccccccccccchhchhhhhhccccc
Confidence 9999999999999999999999887776544 33333221 111222 23557888999986
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.2e-66 Score=506.36 Aligned_cols=288 Identities=40% Similarity=0.780 Sum_probs=272.3
Q ss_pred ecccceEEEEEEEeCCCC----CceEEEEEEEEEcCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 016709 54 IERTGMYYLYFMYCDPQL----KGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLH 129 (384)
Q Consensus 54 V~~tG~Y~v~~~~C~~~~----~~~~~~~~v~~~N~~GyLsa~~~pll~~Y~~~~i~Y~~l~i~W~~~~~k~r~~l~~lh 129 (384)
|+|||+||+++++|+|+. ++.+++++++++||+||||++|+|+|++|++|+++|++++++|++.++||||+++|+|
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999999763 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccceeEeehhH
Q 016709 130 YYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLV 209 (384)
Q Consensus 130 ~~i~~vi~l~~le~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlvs~Gygvvrp~L~~~~~kv~~l~v~ 209 (384)
++|+++++++++|+++++.+|++.|.+|..+.++.+++++++++|++++|+++++||+|||++||+|+++++|+++++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016709 210 YFVASEALEMFENLGNINDFSG--KAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVL 287 (384)
Q Consensus 210 yfv~s~~l~v~~~~~~~~d~s~--~~~l~~~lpla~~~~~f~~Wi~~sL~~Ti~~Lk~~rq~~KL~~yr~f~~~l~~~vv 287 (384)
|++++.+.++.+..+...|.+. +..+++++|++++++++++||++||++|+++||++||++||++||+|+++++++++
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~ 240 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVV 240 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888887766555432 45678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHhhccCcccHHHHHHhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 016709 288 LSIAWIGFE-LYFNATDPLNELWQIAWIIPAFWALLAFILLVVICALWAPSRNPT 341 (384)
Q Consensus 288 ~~v~~i~~~-~~~~~~~~~~~~W~~~W~~~~~w~~l~f~~~~~i~~lwRPt~~n~ 341 (384)
++.++++.+ +.++..++.+++||++|+.+++||+++|+++++++++|||++|||
T Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~W~~~W~~~~~~~~l~~~~~~~i~~lwRPs~~n~ 295 (295)
T PF06814_consen 241 FSRIFVVLSSIIFNTSDSIEKPWKYQWFIEAFWELLYFVFLVAIMYLWRPSENNQ 295 (295)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHhHHHHHHHHHHHHHHHHHHheeCCCCCCc
Confidence 999998887 567777889999999999999999999999999999999999996
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-45 Score=355.71 Aligned_cols=300 Identities=19% Similarity=0.315 Sum_probs=258.9
Q ss_pred hhcccccccccc----cceeEEecccceEEEEEEEeCCCCCceEEEEEEEEEc---CCC---CCCCCCcchhHHHHHHHH
Q 016709 36 KAFFQGTNEETQ----ISEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKN---PDG---YLPGKMAPLMTFYGLMSL 105 (384)
Q Consensus 36 ~~~f~~~~~~~~----~~~~~~V~~tG~Y~v~~~~C~~~~~~~~~~~~v~~~N---~~G---yLsa~~~pll~~Y~~~~i 105 (384)
...|+..++.+. +..+|+.+.+|.|.++++||.|... .++..+++..| |+| |||+++.++|.+|..|++
T Consensus 106 l~~~t~~ql~~~p~s~~~~~~~~kd~~~y~l~f~nc~~~~~-~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl 184 (440)
T KOG2569|consen 106 LHMFTFVQLSPPPGSGFSHHYPLKDPGQYSLFFANCVPETK-GSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSL 184 (440)
T ss_pred hhhhhhhhcCCCCCCCceEEecCCCCceEEEEEeecccccc-ceEEEEEEeeeccCCCCcccccccccccCchhHHHHHH
Confidence 344666666544 3788999999999999999988654 67888887776 667 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016709 106 AYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAV 185 (384)
Q Consensus 106 ~Y~~l~i~W~~~~~k~r~~l~~lh~~i~~vi~l~~le~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlv 185 (384)
+|+..++.|.+.++++++.+++||++|.+++++|.+..++...+++++.++|+ +++|.+..+|+.++|+.+++.++.++
T Consensus 185 ~Yl~~~v~w~~l~~~sk~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g~-~~gw~vl~yI~~~lkg~llf~tivli 263 (440)
T KOG2569|consen 185 LYLDFLVFWCYLLKQSKSVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTGT-VHGWAVLFYIFHFLKGVLLFTTIVLI 263 (440)
T ss_pred HHHHhhhheeeeEeechHHHHHHHHHHHHHHhHcchHHHhhccceEEEEecCc-eeeeeehhhHHHHHhhhhheeEEEee
Confidence 99999999999999999999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred HhCccccccccccccceeEeehhHHHHHHHHHHHHHhhcCC---------CCCCcccchhHHHHHHHHHH--HHHHHHHH
Q 016709 186 SMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNI---------NDFSGKAKLFFVLPVTVLDV--CFILWIFS 254 (384)
Q Consensus 186 s~Gygvvrp~L~~~~~kv~~l~v~yfv~s~~l~v~~~~~~~---------~d~s~~~~l~~~lpla~~~~--~f~~Wi~~ 254 (384)
++||+++||.|.+++||+++++++ +|++++++++ .|+-.|..+|+++++.||++ ++++|+++
T Consensus 264 gTgwSflk~~l~dkekkv~mivip-------lqvlania~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~ 336 (440)
T KOG2569|consen 264 GTGWSFLKPKLQDKEKKVLMIVIP-------LQVLANIASIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIR 336 (440)
T ss_pred ccCceeechhhccccceEEEEEec-------HHHHHHhHheeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehh
Confidence 999999999999999999999999 6666666654 23344667788889999998 78999999
Q ss_pred HHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 016709 255 SLSRTLE-KLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWIIPAFWALLAFILLVVICAL 333 (384)
Q Consensus 255 sL~~Ti~-~Lk~~rq~~KL~~yr~f~~~l~~~vv~~v~~i~~~~~~~~~~~~~~~W~~~W~~~~~w~~l~f~~~~~i~~l 333 (384)
+|++|-+ |+|+++|.+||++||+|+.++++++..+=+.+ +..+..+++ +++|+..++.|++++++|+.++|+
T Consensus 337 ~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv---~~l~~~~~f----ky~W~~~~a~E~at~aFy~l~gyk 409 (440)
T KOG2569|consen 337 HLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVV---FALKTIAVF----KYQWLSFAAEEMATLAFYVLMGYK 409 (440)
T ss_pred hhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhh---hhhhhccce----eeeeHHHHHHHHHHHHHHhhheee
Confidence 9999976 99999999999999999999655544321111 123444445 689999999999999999999999
Q ss_pred cccCCCCCcccccccCCC
Q 016709 334 WAPSRNPTRYAYSEEMGD 351 (384)
Q Consensus 334 wRPt~~n~~~a~s~e~~~ 351 (384)
|||.++|+|+...+|.++
T Consensus 410 FRP~~~~~Yf~vddeeee 427 (440)
T KOG2569|consen 410 FRPVESNEYFVVDDEEEE 427 (440)
T ss_pred eeecccCCccccCchhhh
Confidence 999999999988655433
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.84 E-value=1.4e-18 Score=166.01 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=185.4
Q ss_pred eEEEEEEEEEcCC----CCCCCCCcchhHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016709 74 TMIKGRTVWKNPD----GYLPGKMAPLMTFYGLMSLAYLVLGLAWFLR--FVQLWKDIIQLHYYITGVIALGMCEVAVWY 147 (384)
Q Consensus 74 ~~~~~~v~~~N~~----GyLsa~~~pll~~Y~~~~i~Y~~l~i~W~~~--~~k~r~~l~~lh~~i~~vi~l~~le~~~~~ 147 (384)
++++.++++.||+ .|+|++|++.|++|.++.++|.++.+..... ..+.|+..+++.+++++.+++..++.++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999997 4999999999999999999999998875443 455688999999999999999999999999
Q ss_pred HHhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccc-ceeEeehhHHHHHHHHHHHHHhhcCC
Q 016709 148 FEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLT-FKVIFLGLVYFVASEALEMFENLGNI 226 (384)
Q Consensus 148 ~~y~~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlvs~Gygvvrp~L~~~~-~kv~~l~v~yfv~s~~l~v~~~~~~~ 226 (384)
.++..+..+|.+...+..++.+++++.+.+...+++++|.||++.|++++... .+...+.+++.++..++.+.++....
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 161 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFYF 161 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999888899999999999999999999999999999999998654 34455666677777777666332111
Q ss_pred CCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc
Q 016709 227 NDFS--GKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELY--FNAT 302 (384)
Q Consensus 227 ~d~s--~~~~l~~~lpla~~~~~f~~Wi~~sL~~Ti~~Lk~~rq~~KL~~yr~f~~~l~~~vv~~v~~i~~~~~--~~~~ 302 (384)
++.+ ....-.--.++..+..+...|...++.+|++ .+|+..|.+.|.+|... ...|+..... +-+.
T Consensus 162 d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~~---~~~~~~k~~Fy~~f~~~-------~~lWFl~~Pv~~~ia~ 231 (257)
T PF10192_consen 162 DPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTIS---KEKDPEKRKFYLPFGII-------FSLWFLSLPVIVIIAH 231 (257)
T ss_pred CcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 1110 0001111223445677888899999999875 46788999999999877 6677765521 1121
Q ss_pred CcccHHHHHHhHHHHHHHHHHHHHHHH
Q 016709 303 DPLNELWQIAWIIPAFWALLAFILLVV 329 (384)
Q Consensus 303 ~~~~~~W~~~W~~~~~w~~l~f~~~~~ 329 (384)
..++.||++.+ .++...+.++.+++
T Consensus 232 -~v~~~~R~kvv-~~~~~~~~~~~~~~ 256 (257)
T PF10192_consen 232 -FVDPWVREKVV-TGGNLLIQFIAYIV 256 (257)
T ss_pred -hccHHHHHHHH-HHHHHHHHHHHHHh
Confidence 25666676664 56666666665553
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=99.39 E-value=4.3e-12 Score=123.11 Aligned_cols=266 Identities=14% Similarity=0.172 Sum_probs=183.0
Q ss_pred EecccceEEEEEEEeCC---C--CCceEEEEEEEEEcCC-------CC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016709 53 EIERTGMYYLYFMYCDP---Q--LKGTMIKGRTVWKNPD-------GY-LPGKMAPLMTFYGLMSLAYLVLGLAWFLRFV 119 (384)
Q Consensus 53 ~V~~tG~Y~v~~~~C~~---~--~~~~~~~~~v~~~N~~-------Gy-Lsa~~~pll~~Y~~~~i~Y~~l~i~W~~~~~ 119 (384)
.||-+-.+.+..+.|.. + +...++..++...||+ +| .|++|.++..+|+.|.++|.++.++.....+
T Consensus 114 viPgp~~W~v~l~acytCqw~dss~~ntI~ydi~LtNPn~ea~~pft~~fS~deqnlie~fll~llvY~vL~~iq~~av~ 193 (429)
T KOG4290|consen 114 VIPGPQTWHVFLAACYTCQWDDSSQMNTIGYDILLTNPNIEAIDPFTLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT 193 (429)
T ss_pred ccCCcceeeeeeeecccccccCcCccccccceEEEeCCcccccCccccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567777766642 2 2234677778888885 45 9999999999999999999999998777655
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccc
Q 016709 120 QLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGL 199 (384)
Q Consensus 120 k~r~~l~~lh~~i~~vi~l~~le~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlvs~Gygvvrp~L~~~ 199 (384)
|+.+|.|...++++..++++..+...++.++.++|.+-..+...+.+++..++.-...|++..++||.|+|+..+..
T Consensus 194 ---rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~ 270 (429)
T KOG4290|consen 194 ---RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFDAAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMS 270 (429)
T ss_pred ---cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCHHHHHHHHhhHHHHHHHHHHhccceEEeehhhcc
Confidence 77889999999999999998888888888888999876667788999999999999999999999999999988764
Q ss_pred cceeEeehhHHHHHHHHHHHHHhhcC------CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 016709 200 TFKVIFLGLVYFVASEALEMFENLGN------INDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLE 273 (384)
Q Consensus 200 ~~kv~~l~v~yfv~s~~l~v~~~~~~------~~d~s~~~~l~~~lpla~~~~~f~~Wi~~sL~~Ti~~Lk~~rq~~KL~ 273 (384)
..-+.+-.++|..+...+...+.... .+.+..|.. .-+.+++.++.+|....++++++ .++.+.|.+
T Consensus 271 ~wds~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~y~nwpG----~~viilRii~a~wflielr~~ik---~EhStkK~e 343 (429)
T KOG4290|consen 271 RWDSPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDCYNNWPG----EVVIILRIIVAFWFLIELRVPIK---LEHSTKKCE 343 (429)
T ss_pred ccccchhhhhhhhhhhheeehhhcCceeeeechhhhhccch----HHHHHHHHHHHHHHHHHeeeehh---hhhHHHHHH
Confidence 32222213333332222222222211 112222321 11235677888999999999986 457788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCcccHHHHHHhHHHHHHHHHHHHHHHHHHhhccc
Q 016709 274 LYRKFTNALAACVLLSIAWIGFELYFNA-TDPLNELWQIAWIIPAFWALLAFILLVVICALWAP 336 (384)
Q Consensus 274 ~yr~f~~~l~~~vv~~v~~i~~~~~~~~-~~~~~~~W~~~W~~~~~w~~l~f~~~~~i~~lwRP 336 (384)
.|-+|..- .+.|+++..+... ...+..-||+.=+ ......-.++-++++-.++.|
T Consensus 344 Fl~hfgag-------~ivWFishPi~aival~vS~~wR~kli-q~~t~~~~~val~vl~~lfwp 399 (429)
T KOG4290|consen 344 FLSHFGAG-------QIVWFISHPISAIVALMVSSAWRNKLI-QTNTGMHGVVALTVLNMLFWP 399 (429)
T ss_pred HHHHhccc-------eEEEEEcccHHHHHHHHhhHHHhhcch-hcccchhceehhhhhhcccCC
Confidence 99999877 4455544321111 1124455665543 333444456677777777777
No 6
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=93.15 E-value=9 Score=37.32 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=81.1
Q ss_pred EEEEEEEEEcCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 016709 75 MIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQ--LWKDIIQLHYYITGVIALGMCEVA-VWYFEYA 151 (384)
Q Consensus 75 ~~~~~v~~~N~~GyLsa~~~pll~~Y~~~~i~Y~~l~i~W~~~~~k--~r~~l~~lh~~i~~vi~l~~le~~-~~~~~y~ 151 (384)
+++.+....|| ..+.-+.....++.+.+++ ...|.....| ++++-..=|+++.++..+..+-.- +..+.+.
T Consensus 36 ~i~~~~~~~n~--~fT~~~i~~r~~f~~~s~i----~~~~f~~~~~~~~~~~w~~EQk~~~~Ll~~lil~n~P~~~l~~~ 109 (298)
T PF06664_consen 36 DINFTFIYQNP--SFTQFEIWFRFIFFIISFI----VLIWFLYRLRKYSRRDWLLEQKWTFALLILLILYNNPFFWLSFF 109 (298)
T ss_pred cEEEEEEEecC--CceeehhHHHHHHHHHHHH----HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 34444555554 4444455454444444432 2233333333 356777888999887776544332 2222221
Q ss_pred hhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccc--cccccccccceeEeehhHHHHHHHHHHHHHhhcCCCCC
Q 016709 152 NFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGV--VRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDF 229 (384)
Q Consensus 152 ~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlvs~Gygv--vrp~L~~~~~kv~~l~v~yfv~s~~l~v~~~~~~~~d~ 229 (384)
. + ......+..++....-+.+++-.|++.-|-.. -|.+++---.|+. ++++..++..+.+..+......|.
T Consensus 110 ~---~---~~~~~~l~~i~q~~F~~~Ll~FwL~~~~~~r~~~~r~~~~~y~~ki~-~v~~~~~~~~i~~~~~~~~~~~dP 182 (298)
T PF06664_consen 110 F---N---SPFFLLLDDIFQSIFYAYLLLFWLVFFDSLRMQNERKNLKFYWPKII-LVGLFWLFLFIFDIWERGNQLKDP 182 (298)
T ss_pred h---c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCceEEEhHHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 1 12334445555555544444444444433332 1111111011222 333444444444444443322221
Q ss_pred --Ccc-----cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 016709 230 --SGK-----AKL-FFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNL 269 (384)
Q Consensus 230 --s~~-----~~l-~~~lpla~~~~~f~~Wi~~sL~~Ti~~Lk~~rq~ 269 (384)
+.+ ... ....-++...+ +++|+....-++.++++.++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~i~~-Y~l~ll~li~rs~~~i~~~~~~ 229 (298)
T PF06664_consen 183 FYSIWVDDPGFNIAKAFIILAGICA-YFLYLLFLIIRSFSEIRNKRYF 229 (298)
T ss_pred cccCccCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccHH
Confidence 111 111 12222333322 7788887777777666555544
No 7
>PRK11715 inner membrane protein; Provisional
Probab=82.60 E-value=16 Score=37.91 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCCcchhhhcccccccccccceeEEecccceEEEEE------------EEeCCCCCceEEEEEEEEEcCC-CCCCCCCcc
Q 016709 29 HEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYF------------MYCDPQLKGTMIKGRTVWKNPD-GYLPGKMAP 95 (384)
Q Consensus 29 ~~~~~~~~~~f~~~~~~~~~~~~~~V~~tG~Y~v~~------------~~C~~~~~~~~~~~~v~~~N~~-GyLsa~~~p 95 (384)
++||.+ .|.|+-+ |.+.+|+++|.--=+- .+|++..- ..-...|.+.+|- .|.-.+..
T Consensus 233 S~WphP---SF~G~fL----P~~R~It~~GF~A~W~is~l~r~~~q~~~~~~~~~~-~~~~~~V~~~~PVd~Y~~~~RA- 303 (436)
T PRK11715 233 SNWPHP---SFVGDFL----PAEREISESGFQAQWQVSHLARNYPQVFASGQDGNL-NLPAFGVSLIDPVDQYQKTERA- 303 (436)
T ss_pred cCCcCC---CCCCccC----CCCCeeCCCCeeeEeechhhcCchhhhhhhcccccc-ccceeEEEEeccccHHHHHHHH-
Confidence 457775 5666522 5667899988765553 23332111 1245667777773 34433332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 016709 96 LMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGV 135 (384)
Q Consensus 96 ll~~Y~~~~i~Y~~l~i~W~~~~~k~r~~l~~lh~~i~~v 135 (384)
.=|+++.|+-..++ ++++-.. .+..+||+||.+-++
T Consensus 304 --~KYgiLFI~LTF~~-fFlfE~~-~~~~iHpiQYlLVGl 339 (436)
T PRK11715 304 --VKYAILFIALTFAA-FFLFELL-KKLRIHPVQYLLVGL 339 (436)
T ss_pred --HhHHHHHHHHHHHH-HHHHHHh-cCceecHHHHHHHHH
Confidence 22777766443333 2333333 466799999987553
No 8
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=81.71 E-value=6.9 Score=40.41 Aligned_cols=95 Identities=19% Similarity=0.311 Sum_probs=52.1
Q ss_pred CCCcchhhhcccccccccccceeEEecccceEEEEEEEeCCCC------------CceEEEEEEEEEcCC-CCCCCCCcc
Q 016709 29 HEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFMYCDPQL------------KGTMIKGRTVWKNPD-GYLPGKMAP 95 (384)
Q Consensus 29 ~~~~~~~~~~f~~~~~~~~~~~~~~V~~tG~Y~v~~~~C~~~~------------~~~~~~~~v~~~N~~-GyLsa~~~p 95 (384)
++||.+ .|+|+- +|.+.+|+++|.-.-+-.+--..+ ....-...|++.+|- .|.-.+..
T Consensus 226 S~W~~P---SF~G~f----LP~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~~Ra- 297 (430)
T PF06123_consen 226 SDWPHP---SFTGAF----LPEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKSERA- 297 (430)
T ss_pred cCCcCC---CCCCcc----CCCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHHHHH-
Confidence 447665 466552 256778888887766643221100 011235667777773 34333322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 016709 96 LMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGV 135 (384)
Q Consensus 96 ll~~Y~~~~i~Y~~l~i~W~~~~~k~r~~l~~lh~~i~~v 135 (384)
.=|++++|+-..+++ .++- .-.++.+||+||.+-++
T Consensus 298 --~KYgiLFI~LTF~~f-flfE-~~~~~~iHpiQY~LVGl 333 (430)
T PF06123_consen 298 --VKYGILFIGLTFLAF-FLFE-LLSKLRIHPIQYLLVGL 333 (430)
T ss_pred --HHHHHHHHHHHHHHH-HHHH-HHhcCcccHHHHHHHHH
Confidence 237777775444432 2333 33467899999987553
No 9
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=81.32 E-value=63 Score=32.46 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016709 124 DIIQLHYYITGVIALGMCEVAVWYFEYANF 153 (384)
Q Consensus 124 ~l~~lh~~i~~vi~l~~le~~~~~~~y~~~ 153 (384)
-+.++--++.++...-.+...+...+-++.
T Consensus 115 ~L~k~~~l~~aI~lti~l~~~~~~~~~q~~ 144 (348)
T PF08733_consen 115 WLLKLAALLSAISLTIFLARSTKVLEEQYY 144 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444544443333
No 10
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=80.72 E-value=0.23 Score=44.50 Aligned_cols=141 Identities=17% Similarity=0.107 Sum_probs=81.1
Q ss_pred eeEEecccceEEEEEEEeCCCCC--ceEEEEE---EEEEcCC-----CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016709 50 EEVEIERTGMYYLYFMYCDPQLK--GTMIKGR---TVWKNPD-----GYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFV 119 (384)
Q Consensus 50 ~~~~V~~tG~Y~v~~~~C~~~~~--~~~~~~~---v~~~N~~-----GyLsa~~~pll~~Y~~~~i~Y~~l~i~W~~~~~ 119 (384)
...-|++||-||+..-.-.-+.. ++++.|. -.-.|.+ +|.|..|.+-. ++.+.+|+.-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggv----------llflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGV----------LLFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCce----------eehhHHHHHHHH
Confidence 45678999999998744321111 2222221 1112221 35555554421 223457999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccc
Q 016709 120 QLWKDIIQLHYYITGVIALGMCEV-AVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGG 198 (384)
Q Consensus 120 k~r~~l~~lh~~i~~vi~l~~le~-~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlvs~Gygvvrp~L~~ 198 (384)
.+.+-+.|-|+.+..-+++..... +-..++-..+...-..-.-..-...+++.+|.-+-|+.++--++|.|++|..-.-
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyvFssecikyrqFysvyeiidFlRTnfyrlfviycalgfgitRTvpKy 185 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYVFSSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTVPKY 185 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHheeeeEEEEecccccHHHHHHHHHhhhhhhheeeecccccceeeecce
Confidence 999999999998877665433322 2222222222221111111222357889999999999999999999998754333
Q ss_pred cc
Q 016709 199 LT 200 (384)
Q Consensus 199 ~~ 200 (384)
.+
T Consensus 186 lm 187 (256)
T PF09437_consen 186 LM 187 (256)
T ss_pred EE
Confidence 33
No 11
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=64.08 E-value=1.3e+02 Score=29.88 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-hhHHHHH
Q 016709 234 KLFFVLPVTVLDV---CFILWIFSSLSRTLEKLQMR-RNLAKLE 273 (384)
Q Consensus 234 ~l~~~lpla~~~~---~f~~Wi~~sL~~Ti~~Lk~~-rq~~KL~ 273 (384)
..|+.+|+.++.. .|..--+.+|.+.-+..|.+ ++..|++
T Consensus 180 ~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~ 223 (328)
T PF01534_consen 180 RGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLE 223 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHH
Confidence 3567889876666 45555555554433332222 3455554
No 12
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=60.24 E-value=16 Score=37.07 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=51.3
Q ss_pred EEEEEEEEc--------CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 016709 76 IKGRTVWKN--------PDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITG 134 (384)
Q Consensus 76 ~~~~v~~~N--------~~GyLsa~~~pll~~Y~~~~i~Y~~l~i~W~~~~~k~r~~l~~lh~~i~~ 134 (384)
+...++|+- ++|++++.+.+++.|+-.+.++.+-+.+.|+....+.+....++|+..-+
T Consensus 327 i~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIvv~~l~~~~~fky~W~~~~ 393 (440)
T KOG2569|consen 327 ILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIVVFALKTIAVFKYQWLSFA 393 (440)
T ss_pred EeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhhhhhhhhccceeeeeHHHH
Confidence 456778877 89999999999999998888888888899999999988899999997644
No 13
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=46 Score=32.24 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=26.6
Q ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 016709 236 FFVLPVTVLDV-----CFILWIFSSLSRTLEKLQMRRN----LAKLELYRKFTNALAA 284 (384)
Q Consensus 236 ~~~lpla~~~~-----~f~~Wi~~sL~~Ti~~Lk~~rq----~~KL~~yr~f~~~l~~ 284 (384)
.+++|+.++.- +.+.|.+-+.-.....+|+-|+ .+-.-.|+.|..+--+
T Consensus 89 m~~iPlyf~~~~~w~rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~lykl 146 (328)
T KOG1734|consen 89 MLFIPLYFFLYMQWYRFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLYKL 146 (328)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHH
Confidence 34667766554 5677765554444444555443 2334566666655433
No 14
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=45.14 E-value=1.8e+02 Score=24.29 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q 016709 125 IIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTS 172 (384)
Q Consensus 125 l~~lh~~i~~vi~l~~le~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~ 172 (384)
.++-.-.+..++++..++..++..++-+.|.+|.......+++.++=+
T Consensus 50 ~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va 97 (110)
T TIGR02908 50 EIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVT 97 (110)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHH
Confidence 335555677888899999999999999999877643333344444433
No 15
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=43.06 E-value=38 Score=32.11 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 016709 273 ELYRKFTNALAACVL 287 (384)
Q Consensus 273 ~~yr~f~~~l~~~vv 287 (384)
++.|-+..+++++++
T Consensus 7 ~~~~~~~~illg~~i 21 (248)
T PF11368_consen 7 RILRFLLLILLGGLI 21 (248)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554444
No 16
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=41.25 E-value=3.1e+02 Score=26.46 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHhHHH
Q 016709 248 FILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWIIP 316 (384)
Q Consensus 248 f~~Wi~~sL~~Ti~~Lk~~rq~~KL~~yr~f~~~l~~~vv~~v~~i~~~~~~~~~~~~~~~W~~~W~~~ 316 (384)
|.+.-...+++..++|+..|.. .++.++..+.+..+++++|-+.++...+.+.-...+|..|.+.
T Consensus 23 FllfL~~~~~~s~~KL~~~~Sp----I~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~~lW~il 87 (261)
T PF10160_consen 23 FLLFLAWRLRKSRRKLRHTRSP----IFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADKVLWNIL 87 (261)
T ss_pred HHHHHHHhchHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHH
Confidence 4444455577777777665555 7888888888888889999887776655544344566677654
No 17
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=34.96 E-value=4.1e+02 Score=25.41 Aligned_cols=21 Identities=0% Similarity=-0.075 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016709 100 YGLMSLAYLVLGLAWFLRFVQ 120 (384)
Q Consensus 100 Y~~~~i~Y~~l~i~W~~~~~k 120 (384)
...+.+...+..-+|+++.|+
T Consensus 73 k~sl~~g~~la~P~ilyqiw~ 93 (258)
T PRK10921 73 KLTFMVSLILSAPVILYQVWA 93 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455667777776
No 18
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=45 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhcccCCCCC
Q 016709 323 AFILLVVICALWAPSRNPT 341 (384)
Q Consensus 323 ~f~~~~~i~~lwRPt~~n~ 341 (384)
..++++++.+.+||..+..
T Consensus 19 ~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 19 TLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHhcccchhh
Confidence 4567788999999988653
No 19
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.40 E-value=2.3e+02 Score=22.71 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Q 016709 138 LGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRP 194 (384)
Q Consensus 138 l~~le~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~l~~~LlLlvs~Gygvvrp 194 (384)
|..+..++.++|++ .|+++.....|...+.+--.+-..+... +++=.||+.-+|
T Consensus 21 LL~~ACIFAfidFS-K~~s~~~~~~wRalSii~FIlG~vl~lG--ilifs~y~~C~~ 74 (91)
T PHA02680 21 LLTAACVFAFVDFS-KNTSNVTDYVWRALSVTCFIVGAVLLLG--LFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHhhhhhh-ccCCCCcchhHHHHHHHHHHHHHHHHHH--HHHHHHhcccCC
Confidence 33455666777774 3333333445666655444443344444 445567775554
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=29.28 E-value=4.1e+02 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 016709 311 IAWIIPAFWALLAFILLVVICALWAPSRNPTR 342 (384)
Q Consensus 311 ~~W~~~~~w~~l~f~~~~~i~~lwRPt~~n~~ 342 (384)
.+|+...+|-....++++++..++||......
T Consensus 201 ~~~~~~~~~~~~~~~l~~a~~~l~r~~~~~~~ 232 (1094)
T PRK02983 201 PVWVNALLGLFGAAALIAALIVLFRSQRADNA 232 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 46776777766667777788888999776544
No 21
>PF01445 SH: Viral small hydrophobic protein; InterPro: IPR001477 The mumps virus SH protein is a membrane protein and not essential for virus growth []. Its function is unknown.; GO: 0016020 membrane
Probab=29.23 E-value=1.6e+02 Score=21.33 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=28.1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 016709 89 LPGKMAPLMTFYGLMSLAYLVLGLA-WFLRFVQLWKD 124 (384)
Q Consensus 89 Lsa~~~pll~~Y~~~~i~Y~~l~i~-W~~~~~k~r~~ 124 (384)
.||-+-|+...+..+.++|++...+ |+...+.+|..
T Consensus 1 MpaiqpplyltfLlLill~liiTLyVwi~ltItyKTa 37 (57)
T PF01445_consen 1 MPAIQPPLYLTFLLLILLYLIITLYVWIILTITYKTA 37 (57)
T ss_pred CCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3788888988899999999887664 88877776653
No 22
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=24.28 E-value=2.8e+02 Score=19.99 Aligned_cols=44 Identities=39% Similarity=0.662 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHhHHHHHHHHHHHHHH
Q 016709 273 ELYRKFTNALAACVLLSIAWIGFELYFNATDPLNELWQIAWIIPAFWALLAFILL 327 (384)
Q Consensus 273 ~~yr~f~~~l~~~vv~~v~~i~~~~~~~~~~~~~~~W~~~W~~~~~w~~l~f~~~ 327 (384)
+.|+++..+.++-.+++++...+ ++| ...|-+-++..++.|+++
T Consensus 3 ~~ykSylIA~l~ftvlsi~L~~~-lYF----------TTA~~iAa~~sI~~Fi~~ 46 (53)
T PF06900_consen 3 NTYKSYLIANLCFTVLSIALMPF-LYF----------TTAWGIAAFASIATFIFY 46 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHHHHHHHHHHHHHH
Confidence 35777777766655555554322 222 236666666666666544
No 23
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=24.25 E-value=4.7e+02 Score=22.60 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=43.2
Q ss_pred EEEEcCCCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016709 80 TVWKNPDGYLPGKMAP-LMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVW 146 (384)
Q Consensus 80 v~~~N~~GyLsa~~~p-ll~~Y~~~~i~Y~~l~i~W~~~~~k~r~~l~~lh~~i~~vi~l~~le~~~~ 146 (384)
.+.+|.-|-+-+--.. +....+..+.+..++.+.|...++++++.-.+..+++..++.+..+..++.
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4567776644333221 234567777777778888888888887766667777766666665555554
No 24
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.86 E-value=6.3e+02 Score=23.93 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=17.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016709 266 RRNLAKLELYRKFTNALAACVLLSIAW 292 (384)
Q Consensus 266 ~rq~~KL~~yr~f~~~l~~~vv~~v~~ 292 (384)
+-|.++-.||+-|..++++.+++.++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445666788888888876655554443
No 25
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.54 E-value=1.3e+02 Score=26.99 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016709 274 LYRKFTNALAACVLLSIAWIG 294 (384)
Q Consensus 274 ~yr~f~~~l~~~vv~~v~~i~ 294 (384)
+.|.|+.+.+++.+ .++||+
T Consensus 94 l~R~~~Vl~g~s~l-~i~yfv 113 (163)
T PF06679_consen 94 LKRALYVLVGLSAL-AILYFV 113 (163)
T ss_pred hhhhHHHHHHHHHH-HHHHHH
Confidence 44666555544444 334444
No 26
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.79 E-value=8e+02 Score=24.76 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=13.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016709 260 LEKLQMRRNLAKLELYRKFTNALAACVL 287 (384)
Q Consensus 260 i~~Lk~~rq~~KL~~yr~f~~~l~~~vv 287 (384)
..+...||+.+|.+.-+|+...-.++++
T Consensus 231 ~~aI~krkk~a~~~n~~rl~sl~f~s~l 258 (405)
T COG4393 231 NNAILKRKKAALKNNKHRLLSLAFFSIL 258 (405)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555666665555555444333333
No 27
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=22.78 E-value=5.4e+02 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 016709 312 AWIIPAFWALLAFILLVVICALWAPSRN 339 (384)
Q Consensus 312 ~W~~~~~w~~l~f~~~~~i~~lwRPt~~ 339 (384)
.|+...++.+..++.+-.+...=||+-+
T Consensus 47 ~~~~~~~~~~~~~~~~~~l~~~~rp~~~ 74 (170)
T PF05620_consen 47 SWFGYLLFSLPAIFCYYFLEKMARPKYD 74 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 5666677777777777888888888877
No 28
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=22.45 E-value=55 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=10.7
Q ss_pred cccCCCCCcccccccCCCCccc
Q 016709 334 WAPSRNPTRYAYSEEMGDDFDE 355 (384)
Q Consensus 334 wRPt~~n~~~a~s~e~~~d~d~ 355 (384)
+||+..+..-..-.-.++||||
T Consensus 123 yrp~rq~d~~p~~~~~~~dd~e 144 (150)
T PF06084_consen 123 YRPCRQNDNSPPIEPNGTDDEE 144 (150)
T ss_pred CCcccccCCCCcccCCCCCccc
Confidence 6887765443333333344333
No 29
>PF11037 Musclin: Insulin-resistance promoting peptide in skeletal muscle; InterPro: IPR021088 Osteocrin, also known as Musclin, is a muscle derived secretory peptide which induces insulin resistance in vitro. It encodes a 130 amino acid sequence including a N-terminal 30 amino acid signal sequence. Musclin expression level is tightly regulated by nutritional changes [, ].
Probab=22.42 E-value=65 Score=27.37 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcccCCCCCcccccccCCCCccccccccccCcc----ccchhc-------ccCCCCchhhcc
Q 016709 324 FILLVVICALWAPSRNPTRYAYSEEMGDDFDEETVSLTSSGI----KNVEMA-------ANLGEDLEEDKR 383 (384)
Q Consensus 324 f~~~~~i~~lwRPt~~n~~~a~s~e~~~d~d~e~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~ 383 (384)
+++++++...|.- ..-..-+..+|.-++..+|.||-..+.| .+...+ -++|.|.=|.||
T Consensus 10 hfiLav~l~~wss-~k~~~~~~a~E~~~s~~~~~qs~~~~~EeKSat~LaAKLllLDeLVsLENDViETKk 79 (132)
T PF11037_consen 10 HFILAVTLMQWSS-GKVLSVDAATEAFDSGVLDVQSHPTASEEKSATDLAAKLLLLDELVSLENDVIETKK 79 (132)
T ss_pred HHHHHHHHHHhcC-CceeccccccccccchhhcccCCCccccccchhhHHHHHHHHHHHHHhhhhhhhhhc
Confidence 3445555555653 3333333334544454555666555444 222222 356666666655
No 30
>PRK12768 CysZ-like protein; Reviewed
Probab=21.94 E-value=5.3e+02 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 016709 311 IAWIIPAFWALLAFILLVVICALWAPSRN 339 (384)
Q Consensus 311 ~~W~~~~~w~~l~f~~~~~i~~lwRPt~~ 339 (384)
-+|+....|.+....+++...+++.|-.+
T Consensus 62 l~wL~~ll~~l~~l~~l~~~~flf~~va~ 90 (240)
T PRK12768 62 AGWLGWVLSIAAGLGLALGLALLIAPVTA 90 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888899988765
No 31
>CHL00043 cemA envelope membrane protein
Probab=21.78 E-value=94 Score=29.99 Aligned_cols=21 Identities=48% Similarity=0.972 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016709 238 VLPVTVLDVCFILWIFSSLSRT 259 (384)
Q Consensus 238 ~lpla~~~~~f~~Wi~~sL~~T 259 (384)
.+|+ ++|++|=+|||+.|++.
T Consensus 228 tfPV-iLDtiFKYWIFRyLNRi 248 (261)
T CHL00043 228 TFPV-ILDTIFKYWIFRYLNRV 248 (261)
T ss_pred hhhH-HHHHHHHHHHHhhccCC
Confidence 5687 59999999999999864
No 32
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=21.66 E-value=98 Score=20.48 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.5
Q ss_pred CccCCcCccccCCCCCCCEEeecC
Q 016709 2 KCRRSLGWWKPSFLSVGEVIIHVD 25 (384)
Q Consensus 2 ~~~~~~~~~~~~~C~~g~~i~~~~ 25 (384)
-|+++.|-.-.|.|..|.+++..+
T Consensus 7 ~Ck~~~~pai~G~CP~G~~~i~g~ 30 (36)
T PF04942_consen 7 TCKSPTGPAINGVCPSGYTVITGN 30 (36)
T ss_pred ccCCCCcCCcCCcCCCCCEEECCC
Confidence 488888888889999999998654
No 33
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=20.50 E-value=2e+02 Score=29.43 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=12.2
Q ss_pred HHhhhhhHHHHHHHHH
Q 016709 119 VQLWKDIIQLHYYITG 134 (384)
Q Consensus 119 ~k~r~~l~~lh~~i~~ 134 (384)
..-++.+||+||....
T Consensus 317 ~lt~~~~Hp~QY~LVG 332 (443)
T COG4452 317 VLTGQRLHPMQYLLVG 332 (443)
T ss_pred hhcccccchHHHHHHH
Confidence 3456789999998765
No 34
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=20.28 E-value=88 Score=29.62 Aligned_cols=22 Identities=45% Similarity=0.884 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016709 237 FVLPVTVLDVCFILWIFSSLSRT 259 (384)
Q Consensus 237 ~~lpla~~~~~f~~Wi~~sL~~T 259 (384)
..+|+ ++|++|=+|||+.|++.
T Consensus 196 atfPV-iLDt~fKyWIFryLnri 217 (230)
T PF03040_consen 196 ATFPV-ILDTIFKYWIFRYLNRI 217 (230)
T ss_pred hhhhH-HHHHHHHHhhhcccCCC
Confidence 36687 59999999999999864
No 35
>smart00207 TNF Tumour necrosis factor family. Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.
Probab=20.08 E-value=2.2e+02 Score=23.79 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=23.3
Q ss_pred ceeEEecccceEEEEEEEeCCCC----CceEEEEEEEEEc
Q 016709 49 SEEVEIERTGMYYLYFMYCDPQL----KGTMIKGRTVWKN 84 (384)
Q Consensus 49 ~~~~~V~~tG~Y~v~~~~C~~~~----~~~~~~~~v~~~N 84 (384)
+.+..|+++|.|.+|...+-... +...++..+..++
T Consensus 20 ~g~L~V~~~G~Y~VYsQv~F~~~~~~~~~~~~~~~v~~~~ 59 (125)
T smart00207 20 NGELVVPRDGLYYIYSQVYFRGQGCNGKSVELSLSLHLRK 59 (125)
T ss_pred CCEEEeccCCEEEEEEEEEEeeecCCCCCccEEEEEEEEC
Confidence 56799999999999975553221 2244555555544
Done!