Query 016709
Match_columns 384
No_of_seqs 159 out of 438
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 19.4 3.3E+02 0.011 24.6 7.9 25 96-120 62-86 (249)
2 4eiy_A Adenosine receptor A2A/ 17.7 5.8E+02 0.02 23.4 18.6 25 237-262 211-235 (447)
3 2vov_A MOPE, surface-associate 17.3 88 0.003 27.7 3.2 32 36-67 264-299 (336)
4 1aly_A CD40 ligand; cytokine, 16.3 1.7E+02 0.0057 24.1 4.7 19 49-67 42-61 (146)
5 1rja_A Tyrosine-protein kinase 15.2 1.4E+02 0.0047 22.5 3.7 16 15-30 23-38 (100)
6 1nkz_B Light-harvesting protei 14.1 1.7E+02 0.0058 19.1 3.2 8 329-336 31-38 (41)
7 1pi7_A VPU protein, U ORF prot 12.9 2.3E+02 0.008 17.9 3.5 23 102-124 10-32 (36)
8 1i3z_A EWS/FLI1 activated tran 12.9 1.5E+02 0.005 22.4 3.2 41 16-63 24-66 (103)
9 4hkr_A Calcium release-activat 12.4 4.2E+02 0.015 23.4 6.3 53 205-257 121-173 (214)
10 1lgh_B LH II, B800/850, light 11.8 2.6E+02 0.009 18.6 3.6 8 329-336 36-43 (45)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=19.39 E-value=3.3e+02 Score=24.55 Aligned_cols=25 Identities=4% Similarity=0.232 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 016709 96 LMTFYGLMSLAYLVLGLAWFLRFVQ 120 (384)
Q Consensus 96 ll~~Y~~~~i~Y~~l~i~W~~~~~k 120 (384)
..++...+.....+..-+|.++.|+
T Consensus 62 ~~~lkvs~~~g~~~a~P~ilyQiw~ 86 (249)
T 4b4a_A 62 FILIKISLAVGFIIASPVILYQFWR 86 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666778888876
No 2
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=17.66 E-value=5.8e+02 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016709 237 FVLPVTVLDVCFILWIFSSLSRTLEK 262 (384)
Q Consensus 237 ~~lpla~~~~~f~~Wi~~sL~~Ti~~ 262 (384)
.++|++++ .+.+.-|+..+++..++
T Consensus 211 ~~lP~~ii-~~~y~~I~~~l~~~~~~ 235 (447)
T 4eiy_A 211 VLVPLLLM-LGVYLRIFLAARRQLAD 235 (447)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhh
Confidence 35676543 44555666666665443
No 3
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=17.27 E-value=88 Score=27.66 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=23.6
Q ss_pred hhcccccccccc----cceeEEecccceEEEEEEEe
Q 016709 36 KAFFQGTNEETQ----ISEEVEIERTGMYYLYFMYC 67 (384)
Q Consensus 36 ~~~f~~~~~~~~----~~~~~~V~~tG~Y~v~~~~C 67 (384)
++-|+|-.++.+ +..+.+.+|+|+|.++.+|.
T Consensus 264 ptafkglalndgtagaftksitlpktgyymlyvanv 299 (336)
T 2vov_A 264 PTAFKGLALNDGTAGAFTKSITLPKTGYYMLYVANV 299 (336)
T ss_dssp SSTTGGGEECCSCTTEEEEEEECSSSEEEEEEEEEC
T ss_pred cccccceeecCCccceeeeeeeccCcceEEEEEeee
Confidence 455666544433 26788999999999999885
No 4
>1aly_A CD40 ligand; cytokine, TNF, hyper-IGM syndrome; 2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1i9r_A 3qd6_A* 3lkj_A*
Probab=16.35 E-value=1.7e+02 Score=24.08 Aligned_cols=19 Identities=26% Similarity=0.749 Sum_probs=15.6
Q ss_pred cee-EEecccceEEEEEEEe
Q 016709 49 SEE-VEIERTGMYYLYFMYC 67 (384)
Q Consensus 49 ~~~-~~V~~tG~Y~v~~~~C 67 (384)
+.. ..|+++|.|.+|...+
T Consensus 42 ~g~~L~V~~~GlY~VYsQV~ 61 (146)
T 1aly_A 42 NGKQLTVKRQGLYYIYAQVT 61 (146)
T ss_dssp TTTEEEESSCEEEEEEEEEE
T ss_pred CCCEEEECCCeEEEEEEEEE
Confidence 455 8999999999997554
No 5
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=15.21 E-value=1.4e+02 Score=22.50 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.0
Q ss_pred CCCCCEEeecCCCCCC
Q 016709 15 LSVGEVIIHVDPENHE 30 (384)
Q Consensus 15 C~~g~~i~~~~~~~~~ 30 (384)
+..|.|++|++.++++
T Consensus 23 ~~~G~FLVR~S~~~~g 38 (100)
T 1rja_A 23 NATGAFLIRVSEKPSA 38 (100)
T ss_dssp CSSCCEEEEECSSSSS
T ss_pred CCCCEEEEEeCCCCCC
Confidence 5679999999887654
No 6
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=14.08 E-value=1.7e+02 Score=19.11 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=5.6
Q ss_pred HHHhhccc
Q 016709 329 VICALWAP 336 (384)
Q Consensus 329 ~i~~lwRP 336 (384)
+.+|.|||
T Consensus 31 ~l~w~wrP 38 (41)
T 1nkz_B 31 FLAFSATP 38 (41)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhCC
Confidence 35677888
No 7
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=12.93 E-value=2.3e+02 Score=17.89 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 016709 102 LMSLAYLVLGLAWFLRFVQLWKD 124 (384)
Q Consensus 102 ~~~i~Y~~l~i~W~~~~~k~r~~ 124 (384)
.+.++..+..+.|.+.+..+|+.
T Consensus 10 alivalIiaIVVWtiv~ieYrk~ 32 (36)
T 1pi7_A 10 ALVVAIIIAIVVWSIVIIEGRGG 32 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777899999888874
No 8
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=12.89 E-value=1.5e+02 Score=22.41 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=23.2
Q ss_pred CCCCEEeecCCCCCCCcchhhhcccccccccccceeEEec--ccceEEEE
Q 016709 16 SVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIE--RTGMYYLY 63 (384)
Q Consensus 16 ~~g~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~V~--~tG~Y~v~ 63 (384)
..|.|++|++.++++. ..+.....+ -...|.|. +.|.|++-
T Consensus 24 ~~G~FLVR~S~~~~g~-~~LSv~~~~------~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 24 VDGNFLIRDSESVPGA-LCLCVSFKK------LVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp STTEEEEEECSSSTTC-EEEEEECSS------SEEEEEEEECTTSCEEEC
T ss_pred CCceEEEEeCCCCCCC-EEEEEEECC------EEEEEEEEECCCCeEEEe
Confidence 5799999998776651 111111111 13456664 47887753
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=12.40 E-value=4.2e+02 Score=23.43 Aligned_cols=53 Identities=19% Similarity=0.408 Sum_probs=30.5
Q ss_pred eehhHHHHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 016709 205 FLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLS 257 (384)
Q Consensus 205 ~l~v~yfv~s~~l~v~~~~~~~~d~s~~~~l~~~lpla~~~~~f~~Wi~~sL~ 257 (384)
.+|++-|.+.+++-.+-.+-+.+..+.+.....++|+.+...+|.+=..++|.
T Consensus 121 ~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFYrsL~ 173 (214)
T 4hkr_A 121 LLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHFYRSLV 173 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666655544443332222223333446678988887777776777763
No 10
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=11.85 E-value=2.6e+02 Score=18.58 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=5.7
Q ss_pred HHHhhccc
Q 016709 329 VICALWAP 336 (384)
Q Consensus 329 ~i~~lwRP 336 (384)
+.+|.|||
T Consensus 36 ~L~~~wrP 43 (45)
T 1lgh_B 36 VLVWVWKP 43 (45)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 35677888
Done!