Query 016709
Match_columns 384
No_of_seqs 159 out of 438
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 18:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1alya_ b.22.1.1 (A:) Extracel 37.0 29 0.0021 26.8 5.9 37 51-87 45-85 (146)
2 d1kxga_ b.22.1.1 (A:) Soluble 24.4 68 0.005 24.5 6.1 35 49-85 41-75 (144)
3 d1dg6a_ b.22.1.1 (A:) Apoptosi 18.4 1E+02 0.0073 23.8 6.0 18 49-66 52-69 (162)
4 d2cs0a1 d.93.1.1 (A:8-113) Hem 17.0 48 0.0035 23.7 3.3 17 14-30 27-43 (106)
5 d1lghb_ f.3.1.1 (B:) Light-har 16.7 62 0.0045 19.9 3.2 8 329-336 34-41 (43)
6 d1xu1a_ b.22.1.1 (A:) A prolif 16.1 44 0.0032 25.3 3.0 20 49-68 39-58 (137)
7 d1a81a1 d.93.1.1 (A:9-137) Syk 14.6 61 0.0045 24.3 3.5 18 13-30 24-41 (129)
8 d1tnra_ b.22.1.1 (A:) Tumor ne 14.2 49 0.0036 25.2 2.8 19 49-67 35-53 (144)
9 d2tnfa_ b.22.1.1 (A:) Tumor ne 14.0 50 0.0036 25.3 2.9 19 49-67 37-55 (148)
10 d1i3za_ d.93.1.1 (A:) Ews/fli1 13.9 66 0.0048 22.8 3.4 16 15-30 23-38 (103)
No 1
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.00 E-value=29 Score=26.79 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=25.2
Q ss_pred eEEecccceEEEEEEEeC----CCCCceEEEEEEEEEcCCC
Q 016709 51 EVEIERTGMYYLYFMYCD----PQLKGTMIKGRTVWKNPDG 87 (384)
Q Consensus 51 ~~~V~~tG~Y~v~~~~C~----~~~~~~~~~~~v~~~N~~G 87 (384)
...|+++|.|++|...+- +......+...+..+++.+
T Consensus 45 ~L~V~~~G~Y~VYsQv~f~~~~~~~~~~~~~~~v~~~~~~~ 85 (146)
T d1alya_ 45 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGR 85 (146)
T ss_dssp EEEESSCEEEEEEEEEEEEECTTTSCSSEEEEEEEECCTTS
T ss_pred EEEeCCCeEEEEEEEEEEeccCCCCCceeEEEEEEEEcCCC
Confidence 599999999999975442 2222345677777777653
No 2
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.36 E-value=68 Score=24.47 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=23.3
Q ss_pred ceeEEecccceEEEEEEEeCCCCCceEEEEEEEEEcC
Q 016709 49 SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNP 85 (384)
Q Consensus 49 ~~~~~V~~tG~Y~v~~~~C~~~~~~~~~~~~v~~~N~ 85 (384)
..+..|+++|.|++|...+-.+.. . -.++..+++.
T Consensus 41 ~g~L~V~~~GlYfVYsQV~F~~~~-~-~lsh~v~~~~ 75 (144)
T d1kxga_ 41 ENKILVKETGYFFIYGQVLYTDKT-Y-AMGHLIQRKK 75 (144)
T ss_dssp TTEEEECSCEEEEEEEEEEECCCS-S-EEEEEEEEEC
T ss_pred CCEEEEccceEEEEEEEEEEeCCC-c-ccceEEEEEe
Confidence 567999999999999866654322 2 2344555543
No 3
>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.42 E-value=1e+02 Score=23.77 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=15.4
Q ss_pred ceeEEecccceEEEEEEE
Q 016709 49 SEEVEIERTGMYYLYFMY 66 (384)
Q Consensus 49 ~~~~~V~~tG~Y~v~~~~ 66 (384)
+.+..|+++|+|++|...
T Consensus 52 ~G~L~V~~~G~YfVYsQV 69 (162)
T d1dg6a_ 52 NGELVIHEKGFYYIYSQT 69 (162)
T ss_dssp TTEEEESSCEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEEE
Confidence 567999999999999744
No 4
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.95 E-value=48 Score=23.69 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=12.7
Q ss_pred CCCCCCEEeecCCCCCC
Q 016709 14 FLSVGEVIIHVDPENHE 30 (384)
Q Consensus 14 ~C~~g~~i~~~~~~~~~ 30 (384)
.|..|.|++|++.+.+.
T Consensus 27 ~~~~G~FLvR~S~~~~~ 43 (106)
T d2cs0a1 27 SQPLGSFLIRVSHSHVG 43 (106)
T ss_dssp TSCTTCEEEEECSSSSS
T ss_pred CCCCCcEEEEecCCCCC
Confidence 35679999999876554
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=16.69 E-value=62 Score=19.87 Aligned_cols=8 Identities=38% Similarity=1.074 Sum_probs=5.7
Q ss_pred HHHhhccc
Q 016709 329 VICALWAP 336 (384)
Q Consensus 329 ~i~~lwRP 336 (384)
+..|.|||
T Consensus 34 iLvw~wrP 41 (43)
T d1lghb_ 34 VLVWVWKP 41 (43)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 35677888
No 6
>d1xu1a_ b.22.1.1 (A:) A proliferation-inducing ligand, APRIL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.11 E-value=44 Score=25.34 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.1
Q ss_pred ceeEEecccceEEEEEEEeC
Q 016709 49 SEEVEIERTGMYYLYFMYCD 68 (384)
Q Consensus 49 ~~~~~V~~tG~Y~v~~~~C~ 68 (384)
..+..|+++|.|++|...|-
T Consensus 39 ~g~L~V~~~G~YyVYsQV~f 58 (137)
T d1xu1a_ 39 GDIVRVWDTGIYLLYSQVLF 58 (137)
T ss_dssp TTEEEECSCEEEEEEEEEEE
T ss_pred CCEEEEccceEEEEEEEEEE
Confidence 57799999999999986664
No 7
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.60 E-value=61 Score=24.33 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=14.0
Q ss_pred CCCCCCCEEeecCCCCCC
Q 016709 13 SFLSVGEVIIHVDPENHE 30 (384)
Q Consensus 13 ~~C~~g~~i~~~~~~~~~ 30 (384)
+.|..|.|++|++.++++
T Consensus 24 ~g~~dG~FLVR~S~~~~g 41 (129)
T d1a81a1 24 GGMSDGLYLLRQSRNYLG 41 (129)
T ss_dssp TTCCTTEEEEEECSSSTT
T ss_pred cCCCCccEEEEccCCCCc
Confidence 456789999999877654
No 8
>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.21 E-value=49 Score=25.16 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=16.0
Q ss_pred ceeEEecccceEEEEEEEe
Q 016709 49 SEEVEIERTGMYYLYFMYC 67 (384)
Q Consensus 49 ~~~~~V~~tG~Y~v~~~~C 67 (384)
+....|+++|+|++|...|
T Consensus 35 ~g~L~V~~~G~Y~VYsQv~ 53 (144)
T d1tnra_ 35 NNSLLVPTSGIYFVYSQVV 53 (144)
T ss_dssp TTEEECCSSEEEEEEEEEE
T ss_pred CCEEEEccCeEEEEEEEEE
Confidence 5679999999999997544
No 9
>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.03 E-value=50 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.446 Sum_probs=16.2
Q ss_pred ceeEEecccceEEEEEEEe
Q 016709 49 SEEVEIERTGMYYLYFMYC 67 (384)
Q Consensus 49 ~~~~~V~~tG~Y~v~~~~C 67 (384)
+.+..|+++|.|++|...|
T Consensus 37 ~g~L~V~~~G~YyVYsQv~ 55 (148)
T d2tnfa_ 37 DNQLVVPADGLYLVYSQVL 55 (148)
T ss_dssp TTEEECSSSEEEEEEEEEE
T ss_pred CCEEEECCCeEEEEEEEEE
Confidence 5689999999999997555
No 10
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.95 E-value=66 Score=22.81 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=12.7
Q ss_pred CCCCCEEeecCCCCCC
Q 016709 15 LSVGEVIIHVDPENHE 30 (384)
Q Consensus 15 C~~g~~i~~~~~~~~~ 30 (384)
..+|.|++|++.++++
T Consensus 23 ~~~G~FLVR~S~~~~g 38 (103)
T d1i3za_ 23 GVDGNFLIRDSESVPG 38 (103)
T ss_dssp CSTTEEEEEECSSSTT
T ss_pred CCCCeEEEEecCCCCC
Confidence 3469999999887765
Done!