Query 016710
Match_columns 384
No_of_seqs 172 out of 2276
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 5.4E-21 1.2E-25 165.8 -1.2 278 10-337 98-394 (419)
2 KOG4341 F-box protein containi 99.7 9.1E-19 2E-23 158.5 -3.7 163 12-230 74-253 (483)
3 PLN03210 Resistant to P. syrin 99.3 2.7E-11 5.8E-16 130.5 13.0 193 147-341 630-857 (1153)
4 PLN00113 leucine-rich repeat r 99.2 9.3E-11 2E-15 125.2 10.5 215 126-343 93-345 (968)
5 PLN00113 leucine-rich repeat r 99.2 1.1E-10 2.5E-15 124.6 10.5 213 126-341 140-367 (968)
6 PLN03210 Resistant to P. syrin 99.0 1.2E-09 2.7E-14 117.7 9.2 209 126-341 634-904 (1153)
7 KOG3207 Beta-tubulin folding c 98.9 2E-10 4.2E-15 105.5 0.2 198 149-346 119-342 (505)
8 KOG4341 F-box protein containi 98.8 3.1E-10 6.8E-15 103.7 -2.3 219 124-342 188-438 (483)
9 KOG4194 Membrane glycoprotein 98.8 1.1E-09 2.4E-14 104.1 1.1 241 126-372 173-464 (873)
10 PF12937 F-box-like: F-box-lik 98.8 1.4E-09 3.1E-14 70.3 1.3 36 10-45 1-36 (47)
11 cd00116 LRR_RI Leucine-rich re 98.8 1.4E-09 3.1E-14 101.0 1.2 154 146-299 76-261 (319)
12 cd00116 LRR_RI Leucine-rich re 98.8 1.7E-09 3.7E-14 100.5 1.2 219 126-345 23-293 (319)
13 KOG2120 SCF ubiquitin ligase, 98.7 1.9E-09 4E-14 94.6 -1.5 80 262-341 285-374 (419)
14 KOG0444 Cytoskeletal regulator 98.5 3.3E-09 7.1E-14 101.7 -6.5 166 127-297 127-300 (1255)
15 KOG3207 Beta-tubulin folding c 98.4 3.3E-08 7.2E-13 91.1 -0.2 150 148-297 169-335 (505)
16 KOG0444 Cytoskeletal regulator 98.4 2E-09 4.4E-14 103.1 -9.2 211 128-341 152-373 (1255)
17 KOG4194 Membrane glycoprotein 98.4 7.4E-08 1.6E-12 91.9 1.1 211 126-342 102-353 (873)
18 PRK15387 E3 ubiquitin-protein 98.4 2.4E-06 5.3E-11 87.1 11.1 197 126-343 201-415 (788)
19 PRK15387 E3 ubiquitin-protein 98.4 1.2E-06 2.5E-11 89.4 8.5 201 126-343 222-458 (788)
20 PF00646 F-box: F-box domain; 98.3 8.9E-08 1.9E-12 62.1 -0.6 37 10-46 3-39 (48)
21 PRK15370 E3 ubiquitin-protein 98.2 3.3E-06 7.2E-11 86.4 8.5 199 127-342 179-400 (754)
22 PRK15370 E3 ubiquitin-protein 98.2 1.7E-06 3.6E-11 88.5 6.2 200 126-343 199-428 (754)
23 smart00256 FBOX A Receptor for 98.2 4.3E-07 9.4E-12 56.6 1.2 34 13-46 1-34 (41)
24 KOG1909 Ran GTPase-activating 98.2 7.8E-07 1.7E-11 80.1 2.3 174 170-343 90-311 (382)
25 KOG1947 Leucine rich repeat pr 98.2 2.2E-07 4.8E-12 91.3 -1.4 211 125-342 187-439 (482)
26 KOG1909 Ran GTPase-activating 98.0 2.3E-06 4.9E-11 77.1 1.7 104 127-230 93-224 (382)
27 KOG0618 Serine/threonine phosp 98.0 5.2E-07 1.1E-11 90.5 -3.1 121 216-340 380-510 (1081)
28 PF14580 LRR_9: Leucine-rich r 98.0 5.3E-06 1.1E-10 69.4 3.0 125 150-298 18-150 (175)
29 KOG1947 Leucine rich repeat pr 97.9 1.6E-06 3.4E-11 85.3 -1.6 163 170-332 186-389 (482)
30 PF14580 LRR_9: Leucine-rich r 97.8 7E-06 1.5E-10 68.7 1.3 78 261-340 62-150 (175)
31 KOG2982 Uncharacterized conser 97.8 1.3E-05 2.9E-10 70.9 2.4 178 126-303 71-264 (418)
32 KOG3665 ZYG-1-like serine/thre 97.8 1.2E-05 2.5E-10 81.7 2.1 101 197-298 122-230 (699)
33 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.4E-10 81.8 1.6 147 151-297 122-284 (699)
34 KOG0617 Ras suppressor protein 97.6 1.5E-06 3.4E-11 70.6 -5.6 56 241-298 128-183 (264)
35 KOG1259 Nischarin, modulator o 97.3 9.1E-05 2E-09 65.8 1.5 189 148-342 179-411 (490)
36 KOG0618 Serine/threonine phosp 97.2 7.8E-05 1.7E-09 75.4 0.3 194 140-342 57-276 (1081)
37 KOG2982 Uncharacterized conser 97.1 0.00034 7.3E-09 62.2 2.9 149 151-299 45-210 (418)
38 COG5238 RNA1 Ran GTPase-activa 97.1 0.0006 1.3E-08 59.9 4.4 105 238-342 155-284 (388)
39 KOG4658 Apoptotic ATPase [Sign 97.1 0.00016 3.4E-09 75.6 0.6 195 126-323 571-784 (889)
40 KOG1259 Nischarin, modulator o 97.0 0.00011 2.4E-09 65.3 -0.8 126 171-299 283-410 (490)
41 PRK15386 type III secretion pr 97.0 0.0038 8.3E-08 59.0 8.6 133 171-318 51-186 (426)
42 KOG0617 Ras suppressor protein 96.9 2.5E-05 5.4E-10 63.7 -5.9 133 141-276 46-186 (264)
43 PF13855 LRR_8: Leucine rich r 96.7 0.0012 2.6E-08 44.9 2.4 39 259-298 21-59 (61)
44 KOG1859 Leucine-rich repeat pr 96.7 0.00057 1.2E-08 67.7 0.9 198 95-299 55-290 (1096)
45 KOG4658 Apoptotic ATPase [Sign 96.6 0.016 3.5E-07 60.8 10.7 260 73-343 454-730 (889)
46 KOG4237 Extracellular matrix p 96.6 0.00024 5.3E-09 65.4 -2.4 61 282-343 268-335 (498)
47 PF13855 LRR_8: Leucine rich r 96.5 0.0012 2.5E-08 44.9 1.4 13 150-162 24-36 (61)
48 PRK15386 type III secretion pr 96.5 0.0047 1E-07 58.5 5.7 156 149-322 50-213 (426)
49 KOG0472 Leucine-rich repeat pr 96.5 1.7E-05 3.7E-10 72.9 -10.1 155 140-299 149-308 (565)
50 KOG0472 Leucine-rich repeat pr 96.5 2.5E-05 5.4E-10 71.9 -9.2 195 139-342 102-309 (565)
51 PF07723 LRR_2: Leucine Rich R 96.4 0.0049 1.1E-07 33.8 3.0 25 173-197 1-26 (26)
52 KOG2739 Leucine-rich acidic nu 96.2 0.0012 2.6E-08 57.7 -0.1 106 193-298 39-153 (260)
53 COG4886 Leucine-rich repeat (L 96.2 0.0022 4.7E-08 61.6 1.5 163 150-318 115-286 (394)
54 KOG0281 Beta-TrCP (transducin 96.1 0.0018 3.9E-08 58.3 0.7 37 7-43 72-112 (499)
55 KOG2739 Leucine-rich acidic nu 96.0 0.001 2.3E-08 58.1 -1.4 88 143-230 35-127 (260)
56 KOG4237 Extracellular matrix p 95.8 0.0027 5.9E-08 58.7 0.3 57 126-184 67-128 (498)
57 COG4886 Leucine-rich repeat (L 95.6 0.008 1.7E-07 57.6 2.8 166 127-299 117-288 (394)
58 KOG1644 U2-associated snRNP A' 95.3 0.025 5.4E-07 47.8 4.3 81 149-230 62-151 (233)
59 KOG3864 Uncharacterized conser 95.1 0.0057 1.2E-07 51.5 0.1 65 259-323 121-190 (221)
60 PF12799 LRR_4: Leucine Rich r 95.0 0.024 5.2E-07 35.6 2.7 35 263-299 1-35 (44)
61 PF12799 LRR_4: Leucine Rich r 95.0 0.033 7.1E-07 35.0 3.2 38 240-277 1-38 (44)
62 KOG2997 F-box protein FBX9 [Ge 94.8 0.012 2.6E-07 52.8 1.0 33 10-42 107-144 (366)
63 KOG1859 Leucine-rich repeat pr 94.5 0.0071 1.5E-07 60.3 -1.0 78 261-342 185-266 (1096)
64 PLN03215 ascorbic acid mannose 93.9 0.025 5.5E-07 52.9 1.3 38 9-46 3-41 (373)
65 KOG2123 Uncharacterized conser 93.8 0.0026 5.6E-08 56.2 -5.0 36 170-206 61-97 (388)
66 PLN03150 hypothetical protein; 93.8 0.12 2.7E-06 52.6 6.1 77 242-319 420-500 (623)
67 PLN03150 hypothetical protein; 93.8 0.084 1.8E-06 53.8 4.9 78 221-299 420-501 (623)
68 KOG1644 U2-associated snRNP A' 93.6 0.22 4.9E-06 42.2 6.2 78 150-230 41-124 (233)
69 KOG3864 Uncharacterized conser 92.7 0.028 6.2E-07 47.5 -0.3 61 170-230 123-187 (221)
70 COG5238 RNA1 Ran GTPase-activa 92.4 0.3 6.6E-06 43.4 5.5 175 170-344 90-317 (388)
71 KOG2123 Uncharacterized conser 92.4 0.016 3.6E-07 51.3 -2.3 94 220-315 20-123 (388)
72 KOG0531 Protein phosphatase 1, 89.0 0.073 1.6E-06 51.4 -1.4 102 146-251 90-197 (414)
73 KOG0274 Cdc4 and related F-box 88.0 0.16 3.5E-06 50.5 0.1 40 4-43 102-141 (537)
74 KOG0531 Protein phosphatase 1, 86.9 0.16 3.5E-06 49.1 -0.6 161 127-297 96-264 (414)
75 smart00367 LRR_CC Leucine-rich 85.6 0.7 1.5E-05 25.1 1.9 21 172-192 2-23 (26)
76 PF13013 F-box-like_2: F-box-l 83.7 0.53 1.1E-05 35.9 1.0 29 10-38 22-50 (109)
77 KOG0532 Leucine-rich repeat (L 83.0 0.031 6.7E-07 54.4 -7.2 58 241-298 212-270 (722)
78 PF13516 LRR_6: Leucine Rich r 81.8 1.2 2.5E-05 23.6 1.7 22 262-283 1-22 (24)
79 KOG0532 Leucine-rich repeat (L 78.7 0.18 4E-06 49.2 -3.6 107 140-251 133-245 (722)
80 PF00560 LRR_1: Leucine Rich R 78.2 2 4.3E-05 22.2 1.8 9 290-298 2-10 (22)
81 PF13504 LRR_7: Leucine rich r 78.1 1.5 3.3E-05 21.1 1.2 8 290-297 3-10 (17)
82 PF13306 LRR_5: Leucine rich r 76.8 2.7 5.8E-05 32.7 3.1 11 195-205 10-20 (129)
83 PF13306 LRR_5: Leucine rich r 74.6 3.5 7.5E-05 32.1 3.2 55 149-205 10-66 (129)
84 smart00368 LRR_RI Leucine rich 67.2 4.6 0.0001 22.3 1.7 22 172-193 2-23 (28)
85 KOG4579 Leucine-rich repeat (L 58.5 1.1 2.4E-05 35.8 -2.5 36 171-208 76-111 (177)
86 PF09372 PRANC: PRANC domain; 53.0 6.4 0.00014 29.3 0.8 24 8-31 70-93 (97)
87 KOG3763 mRNA export factor TAP 44.5 10 0.00022 37.4 0.9 60 170-230 216-281 (585)
88 KOG3926 F-box proteins [Amino 42.8 6.5 0.00014 34.9 -0.6 48 10-57 202-256 (332)
89 KOG4579 Leucine-rich repeat (L 33.9 11 0.00024 30.3 -0.5 59 126-184 51-112 (177)
90 smart00370 LRR Leucine-rich re 32.4 30 0.00066 18.3 1.3 15 329-343 1-15 (26)
91 smart00369 LRR_TYP Leucine-ric 32.4 30 0.00066 18.3 1.3 15 329-343 1-15 (26)
92 KOG3763 mRNA export factor TAP 22.6 51 0.0011 32.8 1.7 12 150-161 243-254 (585)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.4e-21 Score=165.79 Aligned_cols=278 Identities=22% Similarity=0.270 Sum_probs=182.9
Q ss_pred cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhcc---cceeeeccccccccccCCCCCcchhhhhhhhhHHHHHHHH
Q 016710 10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT---FSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKET 86 (384)
Q Consensus 10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 86 (384)
+..|||||++.||+.|+.+++.+++.|||||.++-+. |..++...+...+ +...++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p---------------------~~l~~l 156 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP---------------------DVLGRL 156 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh---------------------hHHHHH
Confidence 5689999999999999999999999999999975432 1222222222221 222333
Q ss_pred HhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCC
Q 016710 87 LRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESP 166 (384)
Q Consensus 87 l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~ 166 (384)
+. +++..+++-.... .+ +.+... ...++.++|.++|+........+...+..|..|+.|+|.|..+..+
T Consensus 157 ~~------rgV~v~Rlar~~~---~~-prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~ 225 (419)
T KOG2120|consen 157 LS------RGVIVFRLARSFM---DQ-PRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP 225 (419)
T ss_pred Hh------CCeEEEEcchhhh---cC-chhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH
Confidence 21 3455555432111 11 211111 1234568999999876666677777788899999999999888744
Q ss_pred Cc---cCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCcee---ecCC-CCCCceEEecccc-ccceeee
Q 016710 167 RS---VKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSG-LTKLNKFEVCDAE-ELQRLCI 237 (384)
Q Consensus 167 ~~---~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~---~i~~-~~~L~~L~l~~~~-~l~~~~~ 237 (384)
.. +.=.+|+.|+++.+.- +..++..++++|..|.+|+|+.|...+.. .+.+ -++|+.|.+++|. ++..
T Consensus 226 I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~--- 302 (419)
T KOG2120|consen 226 IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK--- 302 (419)
T ss_pred HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---
Confidence 32 2457899999999877 88889999999999999999998655321 1111 2466666666654 1110
Q ss_pred cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccE
Q 016710 238 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKL 313 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~ 313 (384)
.....-...||+|.+|+|+.+....+.....+.+|+.|++|.++.|..+..- ....|.|.+
T Consensus 303 ---------------sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 303 ---------------SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred ---------------hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 0111224568999999998876443466777788999999999999877432 234589999
Q ss_pred Eeccccccce--e-ecccCCCCceeEE
Q 016710 314 LEIYDCLRLV--E-VKIAASSLSIFKY 337 (384)
Q Consensus 314 L~l~~c~~l~--~-~~~~~~~L~~L~l 337 (384)
|++.+|..-. + +..-+|+|+.-..
T Consensus 368 Ldv~g~vsdt~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 368 LDVFGCVSDTTMELLKEMLSHLKINCQ 394 (419)
T ss_pred EEeccccCchHHHHHHHhCccccccce
Confidence 9999886543 2 2245777654433
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.68 E-value=9.1e-19 Score=158.48 Aligned_cols=163 Identities=24% Similarity=0.345 Sum_probs=92.0
Q ss_pred CCCHHHHHHHhcCCCccceeehhhhhhhhhhh------hcccceeeeccccccccccCCCCCcchhhhhhhhhHHHHHHH
Q 016710 12 NLPEPILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKE 85 (384)
Q Consensus 12 ~LPdeil~~I~s~L~~~~~~~~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (384)
.||.|++.+|||+|+.+.++|++++|+.|..+ |+.+...++..+.-.+ .|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~----------------------VV~~ 131 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGG----------------------VVEN 131 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCc----------------------ceeh
Confidence 49999999999999999999999999999865 3332222111110000 0111
Q ss_pred HHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeC-CCCCcccCccccCCCCccEEEecCeeec
Q 016710 86 TLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLE 164 (384)
Q Consensus 86 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~-~~~~~~lp~~l~~~~~L~~L~L~~~~l~ 164 (384)
+..|.+ ..++++.+..+ +.....+-.....|+++++|.+.+|..-
T Consensus 132 -~~~Rcg---------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i 177 (483)
T KOG4341|consen 132 -MISRCG---------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI 177 (483)
T ss_pred -Hhhhhc---------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceec
Confidence 112222 33444444332 1223333334445677777766666422
Q ss_pred CC-----CccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCcee----ecCCCCCCceEEecccc
Q 016710 165 SP-----RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL----ELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 165 ~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~----~i~~~~~L~~L~l~~~~ 230 (384)
.. -+..|++|+.|+|..|.. ++..++.+..+||+|++|+++.|+.++.- ...++..++.+...+|.
T Consensus 178 Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 178 TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 11 112567777777777554 66666667777777777777777655331 11234455566555665
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.28 E-value=2.7e-11 Score=130.49 Aligned_cols=193 Identities=21% Similarity=0.231 Sum_probs=98.7
Q ss_pred ccCCCCccEEEecCee-ec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecC-CCCCCce
Q 016710 147 ILCSNSIEILTLAGLK-LE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNK 223 (384)
Q Consensus 147 l~~~~~L~~L~L~~~~-l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~-~~~~L~~ 223 (384)
+..+++|+.|+|+++. +. .+....+++|++|+|.+|..- ..+...+..+++|+.|++.+|..++.+... .+++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 3344555555555432 11 222234555666665555421 111222344566666666666555433221 3456666
Q ss_pred EEeccccccceeeecCCceeEEEEeCcccccceecc------------------------------ccCccCcEEEeecc
Q 016710 224 FEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNL------------------------------ASCKFLKYLRFALT 273 (384)
Q Consensus 224 L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~------------------------------~~~~~L~~L~L~~~ 273 (384)
|.+++|..+..+....++|+.|.++++.....+..+ ..+++|+.|++.++
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 777666544444333456666666554422211110 11245666666555
Q ss_pred ccchHHHHHHhccCCCcceEeeccccccccccc--CCCcccEEeccccccceeecccCCCCceeEEeccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCDDLKSINI--SSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDV 341 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~ 341 (384)
..... +...+.++++|+.|+|++|..++.+.. ..++|++|++++|..+..++....+|+.|+++++.
T Consensus 789 ~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 789 PSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred CCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 42211 233456778888888888876665443 34678888888776665544444445555554443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.17 E-value=9.3e-11 Score=125.23 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=100.6
Q ss_pred CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
+.++.|++..+.. ...+|..++ .+++|++|+++++.+.. .....+++|++|+|+++.+.... ...+..+++|+.|+
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC-ChHHhcCCCCCEEE
Confidence 5666666643221 124555544 56667777776665431 11224566666666666552211 12234556666666
Q ss_pred eeeCCCCce--eecCCCCCCceEEecccccc---ceeeecCCceeEEEE------------------------eCcccc-
Q 016710 204 LQLCPGLKN--LELSGLTKLNKFEVCDAEEL---QRLCIIAQDVQEVSI------------------------QGPLPF- 253 (384)
Q Consensus 204 L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l---~~~~~~~p~L~~L~l------------------------~~~~~~- 253 (384)
+.+|..... ..+..+++|+.|++.+|... +......++|+.|++ +++...
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 665542211 12233455555555554311 111112344444444 443311
Q ss_pred cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee---cc
Q 016710 254 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV---KI 327 (384)
Q Consensus 254 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~---~~ 327 (384)
..+..+..+++|+.|++.++.+.+. +...+..+++|+.|++++|.... ......++|++|++.++.-...+ ..
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 1222334445555555555443321 11223345556666665543211 11223456666666654322222 24
Q ss_pred cCCCCceeEEeccccc
Q 016710 328 AASSLSIFKYSGDVIS 343 (384)
Q Consensus 328 ~~~~L~~L~l~~~~~~ 343 (384)
.+++|++|++.+|.+.
T Consensus 330 ~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 330 SLPRLQVLQLWSNKFS 345 (968)
T ss_pred cCCCCCEEECcCCCCc
Confidence 5777777777777653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=1.1e-10 Score=124.55 Aligned_cols=213 Identities=18% Similarity=0.130 Sum_probs=105.6
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 202 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 202 (384)
+++++|++..+.. ...+|..+..+++|++|++++|.+. .+.. ..+++|++|+|++|.+.... ...+..+++|+.|
T Consensus 140 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEE
Confidence 4555555543221 2245555666777777777776543 2322 25677777777776652211 1224456677777
Q ss_pred EeeeCCCCcee--ecCCCCCCceEEeccccc---cceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeeccccc
Q 016710 203 SLQLCPGLKNL--ELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIK 276 (384)
Q Consensus 203 ~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~ 276 (384)
.+.+|...... .+..+++|+.|++.+|.. +.......++|++|++.++... ..+..+..+++|++|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 77666433211 234556777777776641 1111124556677766655421 12223445566666666655543
Q ss_pred hHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceeec---ccCCCCceeEEeccc
Q 016710 277 DEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV 341 (384)
Q Consensus 277 ~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~ 341 (384)
.. +...+.++++|+.|+++++..... .....++|+.|++.++.-...++ ..+++|+.|++++|.
T Consensus 298 ~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 298 GE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred cC-CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 22 233344556666666655442211 11233555555555443211111 234445555554443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.98 E-value=1.2e-09 Score=117.72 Aligned_cols=209 Identities=18% Similarity=0.249 Sum_probs=116.2
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 202 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 202 (384)
.+++.+++..+. ....+|. +..+++|+.|+|++|... .|... .+++|+.|++++|..-. .+.. ...++.|+.|
T Consensus 634 ~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~-~i~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPT-GINLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCC-cCCCCCCCEE
Confidence 577777775432 1344453 556788888888876432 33333 57788888887764300 0100 0146677777
Q ss_pred EeeeCCCCceeecCCCCCCceEEecccc--ccce------------------------------eeecCCceeEEEEeCc
Q 016710 203 SLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQR------------------------------LCIIAQDVQEVSIQGP 250 (384)
Q Consensus 203 ~L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~------------------------------~~~~~p~L~~L~l~~~ 250 (384)
.+.+|..+...... .++|+.|++.++. .++. .....++|+.|.++++
T Consensus 710 ~Lsgc~~L~~~p~~-~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 710 NLSGCSRLKSFPDI-STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred eCCCCCCccccccc-cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 77777544322111 1244444444332 0000 0012356777777665
Q ss_pred c-cccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc-----------------------c
Q 016710 251 L-PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN-----------------------I 306 (384)
Q Consensus 251 ~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~-----------------------~ 306 (384)
. ....+..+..+++|+.|++.+|..... +... .++++|+.|++++|..+..+. .
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~ 866 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLET-LPTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE 866 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCe-eCCC-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh
Confidence 4 222344466788888888877642111 1111 146777888887776543221 2
Q ss_pred CCCcccEEeccccccceeec---ccCCCCceeEEeccc
Q 016710 307 SSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV 341 (384)
Q Consensus 307 ~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~ 341 (384)
.+++|+.|++.+|..+..++ ..+++|+.+++++|.
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 34678888888888777554 346777777887774
No 7
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2e-10 Score=105.50 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=141.3
Q ss_pred CCCCccEEEecCeeecCCC----ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCC---ceeecCCCCC
Q 016710 149 CSNSIEILTLAGLKLESPR----SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL---KNLELSGLTK 220 (384)
Q Consensus 149 ~~~~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~---~~~~i~~~~~ 220 (384)
..+.|++..|.++.+..+. ...||+++.|+|+.+-+ ....+..+++.+|+|+.|+++.+... .......+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4678888888888776333 22699999999999998 77788899999999999999987544 2222235689
Q ss_pred CceEEecccc----ccceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEee
Q 016710 221 LNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLI 295 (384)
Q Consensus 221 L~~L~l~~~~----~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l 295 (384)
|+.|.++.|. .+..+...+|+|+.|.+.++... .......-+..|+.|+|+++.+.+..-......+|+|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999997 55666778999999999887411 111123336789999999988766554556778999999999
Q ss_pred ccccc--cc--c-----cccCCCcccEEeccccc--cceee--cccCCCCceeEEeccccccce
Q 016710 296 AGCDD--LK--S-----INISSRSLKLLEIYDCL--RLVEV--KIAASSLSIFKYSGDVISFQL 346 (384)
Q Consensus 296 ~~c~~--l~--~-----~~~~~~~L~~L~l~~c~--~l~~~--~~~~~~L~~L~l~~~~~~~~~ 346 (384)
+.|.. +. . ....+++|++|.+.... .+.++ ....++|..|.+.++.++.++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 88651 11 1 12345899999987432 23322 245777788877777664444
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=3.1e-10 Score=103.65 Aligned_cols=219 Identities=17% Similarity=0.156 Sum_probs=156.0
Q ss_pred HhCCCcEEEEEeCCCCC-cccCccccCCCCccEEEecCeeecC-----CCccCCCCCCeEEeeeeec-ChHHHHHHHcCC
Q 016710 124 LGCNVKELSLELLGNPR-FNLPEIILCSNSIEILTLAGLKLES-----PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGC 196 (384)
Q Consensus 124 ~~~~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~l~~-----~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~ 196 (384)
..+.++.+.+..|.... ..+......|++|++|++++|..-. +....+..++.+.+.+|.- .++.+...-..|
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 34677888776543222 2233234468889999988885431 1122567788887788766 777777777788
Q ss_pred CCccEEEeeeCCCCceee---cC-CCCCCceEEecccccccee-----eecCCceeEEEEeCcc---cccceeccccCcc
Q 016710 197 PLIEYLSLQLCPGLKNLE---LS-GLTKLNKFEVCDAEELQRL-----CIIAQDVQEVSIQGPL---PFQCKFNLASCKF 264 (384)
Q Consensus 197 p~Le~L~L~~c~~~~~~~---i~-~~~~L~~L~l~~~~~l~~~-----~~~~p~L~~L~l~~~~---~~~~~~~~~~~~~ 264 (384)
+-+-++++..|..++... +. .+..|+.|+.++|..+... ..++++|+.+.+.++. ...+...-.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 888888888887665433 22 4678899999999854443 3478999999998876 1222222346899
Q ss_pred CcEEEeeccc-cchHHHHHHhccCCCcceEeecccccccccc--------cCCCcccEEecccccccee----ecccCCC
Q 016710 265 LKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSIN--------ISSRSLKLLEIYDCLRLVE----VKIAASS 331 (384)
Q Consensus 265 L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~--------~~~~~L~~L~l~~c~~l~~----~~~~~~~ 331 (384)
|+.+++..+. .++..+..+..+||.|+.|.++.|..++..+ .....|+.|++++|..+++ ....|++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 9999998877 4455688899999999999999998775442 2346899999999998873 3467999
Q ss_pred CceeEEecccc
Q 016710 332 LSIFKYSGDVI 342 (384)
Q Consensus 332 L~~L~l~~~~~ 342 (384)
|+.+++.++..
T Consensus 428 Leri~l~~~q~ 438 (483)
T KOG4341|consen 428 LERIELIDCQD 438 (483)
T ss_pred cceeeeechhh
Confidence 99999999864
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.81 E-value=1.1e-09 Score=104.06 Aligned_cols=241 Identities=21% Similarity=0.225 Sum_probs=135.7
Q ss_pred CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec-CC-Ccc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE-SP-RSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~-~~-~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.++++|+|.... ...+... ..++.+|..|+|+.+++. .| ..+ .+|.|+.|+|..+.+....... +.+.|.|+.
T Consensus 173 ~ni~~L~La~N~--It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~n 249 (873)
T KOG4194|consen 173 VNIKKLNLASNR--ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQN 249 (873)
T ss_pred CCceEEeecccc--ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhh
Confidence 477788775433 2222222 224568888888887766 22 333 4888888888888762211111 455666666
Q ss_pred EEeeeCCCCc--e-----------e-------------ecCCCCCCceEEeccccccceeee----cCCceeEEEEeCcc
Q 016710 202 LSLQLCPGLK--N-----------L-------------ELSGLTKLNKFEVCDAEELQRLCI----IAQDVQEVSIQGPL 251 (384)
Q Consensus 202 L~L~~c~~~~--~-----------~-------------~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~ 251 (384)
|.|..++..+ . + ..-++..|+.|+++.. .+..+++ .+++|+.|+++.+.
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccc
Confidence 6665543221 0 0 1113456666666654 2334433 46777777776655
Q ss_pred cccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc---cccc---cccCCCcccEEecccccccee
Q 016710 252 PFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD---DLKS---INISSRSLKLLEIYDCLRLVE 324 (384)
Q Consensus 252 ~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~---~l~~---~~~~~~~L~~L~l~~c~~l~~ 324 (384)
..... -.+..+..|+.|.|+.|.++. .-...+.++.+|++|+++... -++. .....++|+.|++.+. .+..
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~ 406 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKS 406 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeee
Confidence 32221 234446677777777765542 223455677889999887743 1122 2223588999999863 3444
Q ss_pred ec----ccCCCCceeEEecccc-ccceEEEEee-ccCcceeecc----CCcchhhhhc
Q 016710 325 VK----IAASSLSIFKYSGDVI-SFQLGAITFS-KSHLLFQTEN----SSSEWYTEHF 372 (384)
Q Consensus 325 ~~----~~~~~L~~L~l~~~~~-~~~~~~l~~~-~~~~~~~~~~----~~~~~~~~~~ 372 (384)
++ .+.++||.|++.+|.+ +-|..++.-. -+++-+-+.. |.--|-.+..
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence 44 5799999999999986 5555443211 1133333322 4566665554
No 10
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=1.4e-09 Score=70.28 Aligned_cols=36 Identities=33% Similarity=0.630 Sum_probs=31.3
Q ss_pred cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710 10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH 45 (384)
Q Consensus 10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~ 45 (384)
|+.||+||+.+||+||+.+|+++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998653
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.4e-09 Score=101.00 Aligned_cols=154 Identities=20% Similarity=0.094 Sum_probs=79.1
Q ss_pred cccCCCCccEEEecCeeec--CCCc-cCC---CCCCeEEeeeeecChHHHHH---HHcCC-CCccEEEeeeCCCCce---
Q 016710 146 IILCSNSIEILTLAGLKLE--SPRS-VKL---SSLTKLFLMRVDATDLVLQS---LLIGC-PLIEYLSLQLCPGLKN--- 212 (384)
Q Consensus 146 ~l~~~~~L~~L~L~~~~l~--~~~~-~~~---~~L~~L~L~~~~~~~~~l~~---l~~~~-p~Le~L~L~~c~~~~~--- 212 (384)
.+..+++|++|++++|.+. .+.. ..+ ++|+.|+++++.+++..... .+..+ ++|++|.+.+|.....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3444667777777776553 1111 112 44777777777774433332 23344 7777777777753310
Q ss_pred -e--ecCCCCCCceEEecccccc----ceee---ecCCceeEEEEeCccccc-----ceeccccCccCcEEEeeccccch
Q 016710 213 -L--ELSGLTKLNKFEVCDAEEL----QRLC---IIAQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 213 -~--~i~~~~~L~~L~l~~~~~l----~~~~---~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~ 277 (384)
+ .+..+++|+.|++.+|.-. ..+. ...++|++|+++++.... ....+..+++|++|+++++.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 0 1223456777777666410 1111 122456666665544211 11123445666666666666665
Q ss_pred HHHHHHhccC----CCcceEeecccc
Q 016710 278 EWLCNQISKF----PLLESLLIAGCD 299 (384)
Q Consensus 278 ~~~~~l~~~~----p~L~~L~l~~c~ 299 (384)
..+..+...+ +.|++|++++|.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCC
Confidence 4444443332 566666666664
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=1.7e-09 Score=100.54 Aligned_cols=219 Identities=21% Similarity=0.099 Sum_probs=145.2
Q ss_pred CCCcEEEEEeCCCCC---cccCccccCCCCccEEEecCeeecC-CC--------ccCCCCCCeEEeeeeecCh---HHHH
Q 016710 126 CNVKELSLELLGNPR---FNLPEIILCSNSIEILTLAGLKLES-PR--------SVKLSSLTKLFLMRVDATD---LVLQ 190 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~-~~--------~~~~~~L~~L~L~~~~~~~---~~l~ 190 (384)
.+++++++..+.... ..++..+...++|++|+++++.+.. +. ...+++|+.|+++++.+.. ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 459999997655422 3455556668889999998875541 11 1147799999999998842 3344
Q ss_pred HHHcCCCCccEEEeeeCCCCc-ee-----ecCCC-CCCceEEecccccc----cee---eecCCceeEEEEeCccccc--
Q 016710 191 SLLIGCPLIEYLSLQLCPGLK-NL-----ELSGL-TKLNKFEVCDAEEL----QRL---CIIAQDVQEVSIQGPLPFQ-- 254 (384)
Q Consensus 191 ~l~~~~p~Le~L~L~~c~~~~-~~-----~i~~~-~~L~~L~l~~~~~l----~~~---~~~~p~L~~L~l~~~~~~~-- 254 (384)
.+... +.|++|++.+|.... .. .+..+ ++|+.|++.+|.-. ..+ ...+++|+.|++.++....
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44455 779999999986441 00 12344 79999999999611 111 1245689999998876321
Q ss_pred ---ceeccccCccCcEEEeeccccchHH---HHHHhccCCCcceEeeccccccc----cccc----CCCcccEEeccccc
Q 016710 255 ---CKFNLASCKFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCDDLK----SINI----SSRSLKLLEIYDCL 320 (384)
Q Consensus 255 ---~~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~p~L~~L~l~~c~~l~----~~~~----~~~~L~~L~l~~c~ 320 (384)
....+..+++|++|++.++.+++.. +...+..+++|+.|++++|.--. .+.. ..++|++|.+.+|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1112345679999999998877554 34456778999999999976221 1222 23799999999874
Q ss_pred cc----e---eecccCCCCceeEEeccccccc
Q 016710 321 RL----V---EVKIAASSLSIFKYSGDVISFQ 345 (384)
Q Consensus 321 ~l----~---~~~~~~~~L~~L~l~~~~~~~~ 345 (384)
-- . ......++|+.+++++|.++.+
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 21 1 2234468899999999987544
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.9e-09 Score=94.65 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=62.5
Q ss_pred CccCcEEEeeccc--cchHHHHHHhccCCCcceEeecccccccc----cccCCCcccEEeccccccce--eec--ccCCC
Q 016710 262 CKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKS----INISSRSLKLLEIYDCLRLV--EVK--IAASS 331 (384)
Q Consensus 262 ~~~L~~L~L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~c~~l~--~~~--~~~~~ 331 (384)
-++|+.|+|+++. +....+.-+...||+|.+||+++|..++. ....++.|++|.++.|-++. .+. ...|+
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS 364 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence 3678888887754 44455667788999999999999987754 23356899999999998887 222 56999
Q ss_pred CceeEEeccc
Q 016710 332 LSIFKYSGDV 341 (384)
Q Consensus 332 L~~L~l~~~~ 341 (384)
|.+|++.|+-
T Consensus 365 l~yLdv~g~v 374 (419)
T KOG2120|consen 365 LVYLDVFGCV 374 (419)
T ss_pred eEEEEecccc
Confidence 9999998873
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.46 E-value=3.3e-09 Score=101.70 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=83.5
Q ss_pred CCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 127 NVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
+.-+|+|+ .+...++|..++ .+..|-.|+|+++.+. +|....+.+|++|.|+++......+.+ +.+...|+.|.
T Consensus 127 n~iVLNLS--~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLh 203 (1255)
T KOG0444|consen 127 NSIVLNLS--YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLH 203 (1255)
T ss_pred CcEEEEcc--cCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhh
Confidence 44444443 334556666554 3555666666666665 333336777777777777655444444 22334455555
Q ss_pred eeeCCCC-ce--eecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchH
Q 016710 204 LQLCPGL-KN--LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE 278 (384)
Q Consensus 204 L~~c~~~-~~--~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 278 (384)
+++.... .. .++.++.+|+.++++... .++.-.-..++|+.|.++++.........+.-.+|++|+++.++++.
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~- 282 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV- 282 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-
Confidence 5543221 11 123344566666666442 12222234566777777766544333333334556666665555431
Q ss_pred HHHHHhccCCCcceEeecc
Q 016710 279 WLCNQISKFPLLESLLIAG 297 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~~ 297 (384)
+...+-.++.|++|.+.+
T Consensus 283 -LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 283 -LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred -chHHHhhhHHHHHHHhcc
Confidence 233333445555555444
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.3e-08 Score=91.13 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=94.3
Q ss_pred cCCCCccEEEecCeeecCCCc----cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCc--eeecCCCCCC
Q 016710 148 LCSNSIEILTLAGLKLESPRS----VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK--NLELSGLTKL 221 (384)
Q Consensus 148 ~~~~~L~~L~L~~~~l~~~~~----~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~--~~~i~~~~~L 221 (384)
..+|+|++|+|+.+.+..+.. ..++.||+|.|+.|.++...+.+++..||.|+.|.+..+.... .....-+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 346888888888776663322 2688888889988888888888888889999999988875331 1111223488
Q ss_pred ceEEecccc--ccceee--ecCCceeEEEEeCcccccce-------eccccCccCcEEEeeccccchHHHHHHhccCCCc
Q 016710 222 NKFEVCDAE--ELQRLC--IIAQDVQEVSIQGPLPFQCK-------FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLL 290 (384)
Q Consensus 222 ~~L~l~~~~--~l~~~~--~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L 290 (384)
+.|++++.. ...... ...|+|+.|.+..+...... -....+++|++|.+..|.+.+.....-+...++|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 888888775 222222 25667777776655422211 1123467777777777766544334444556666
Q ss_pred ceEeecc
Q 016710 291 ESLLIAG 297 (384)
Q Consensus 291 ~~L~l~~ 297 (384)
++|.+..
T Consensus 329 k~l~~~~ 335 (505)
T KOG3207|consen 329 KHLRITL 335 (505)
T ss_pred hhhhccc
Confidence 6666543
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.41 E-value=2e-09 Score=103.09 Aligned_cols=211 Identities=15% Similarity=0.047 Sum_probs=143.2
Q ss_pred CcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC---CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES---PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 128 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
+-.|+| ..+....+|..+..+.+|+.|.|+++.+.. ....++.+|.+|++++...+...+..-+....+|.++++
T Consensus 152 LLfLDL--S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 152 LLFLDL--SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred Hhhhcc--ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 334444 345578899999999999999999987662 233356778888888876655555555667788999999
Q ss_pred eeCCCCce-eecCCCCCCceEEeccccccceeee---cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHH
Q 016710 205 QLCPGLKN-LELSGLTKLNKFEVCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWL 280 (384)
Q Consensus 205 ~~c~~~~~-~~i~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 280 (384)
+.+.-... ..+-.+++|++|.+++.. +..+.. .-.+|++|.++.+.....+..+.+++.|+.|.+.+++++-+.+
T Consensus 230 S~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 230 SENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred cccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC
Confidence 86532211 112246899999999874 333332 3358899999888755556567778899999888888776666
Q ss_pred HHHhccCCCcceEeecccc--cccccccCCCcccEEeccccccce--eecccCCCCceeEEeccc
Q 016710 281 CNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYDCLRLV--EVKIAASSLSIFKYSGDV 341 (384)
Q Consensus 281 ~~l~~~~p~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~L~~L~l~~~~ 341 (384)
..=++.+.+|+.+..++.. .+..-.+.|++|+.|.++...-+. +-..-+|.|+.|++..|+
T Consensus 309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence 6666667777777776643 223333457888888887543222 333557888888887775
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.41 E-value=7.4e-08 Score=91.90 Aligned_cols=211 Identities=17% Similarity=0.141 Sum_probs=100.3
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CC--CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP--RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 202 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 202 (384)
++++++.+.. +....+|.......+|+.|.|.++.+. +. ....+|.|++|+|+.+.++.-.... +..-+++++|
T Consensus 102 ~nLq~v~l~~--N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s-fp~~~ni~~L 178 (873)
T KOG4194|consen 102 PNLQEVNLNK--NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS-FPAKVNIKKL 178 (873)
T ss_pred Ccceeeeecc--chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC-CCCCCCceEE
Confidence 5666666542 234455555444556666666665554 11 1124566666666665542111111 2223456666
Q ss_pred EeeeCCCC--ceeecCCCCCCceEEecccc--ccceeee-cCCceeEEEEeCcccccc-eeccc----------------
Q 016710 203 SLQLCPGL--KNLELSGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLA---------------- 260 (384)
Q Consensus 203 ~L~~c~~~--~~~~i~~~~~L~~L~l~~~~--~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~---------------- 260 (384)
+|.++... +.-...++.+|..|.++... .++.... ..|+|+.|++..+..... ...+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 66655322 11223344455555555443 2222222 255566666555432111 11222
Q ss_pred --------cCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccccc----CCCcccEEeccccccceeec--
Q 016710 261 --------SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI----SSRSLKLLEIYDCLRLVEVK-- 326 (384)
Q Consensus 261 --------~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~c~~l~~~~-- 326 (384)
.+.++++|+|..|.+.... .+.+.++..|+.|+++... +..+.. -+++|+.|++++. .+..+.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l~~~ 335 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRLDEG 335 (873)
T ss_pred cccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccCChh
Confidence 3445555555444433211 3344555666666666532 222222 2367777777643 222222
Q ss_pred --ccCCCCceeEEecccc
Q 016710 327 --IAASSLSIFKYSGDVI 342 (384)
Q Consensus 327 --~~~~~L~~L~l~~~~~ 342 (384)
..+..|++|.+++|.+
T Consensus 336 sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSI 353 (873)
T ss_pred HHHHHHHhhhhcccccch
Confidence 3466778888888766
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.37 E-value=2.4e-06 Score=87.08 Aligned_cols=197 Identities=20% Similarity=0.129 Sum_probs=94.2
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
.+-..|++... ...++|..+. ++|+.|.+.++.+. .|. ..++|++|++++|.++. + ....++|+.|++
T Consensus 201 ~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--L---P~lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--L---PVLPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--c---cCcccccceeec
Confidence 34455555433 3446676553 46777777776655 222 25777888887776521 1 112356666666
Q ss_pred eeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceec----------------cccC-ccCcE
Q 016710 205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFN----------------LASC-KFLKY 267 (384)
Q Consensus 205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~----------------~~~~-~~L~~ 267 (384)
.++... .+.. ..++|+.|.+.++. +..+....|+|+.|+++++.....+.. ++.+ ++|+.
T Consensus 270 s~N~L~-~Lp~-lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~ 346 (788)
T PRK15387 270 FSNPLT-HLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQE 346 (788)
T ss_pred cCCchh-hhhh-chhhcCEEECcCCc-cccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccce
Confidence 655321 1110 11245555555542 222222334555555554432111100 1111 24556
Q ss_pred EEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceeecccCCCCceeEEeccccc
Q 016710 268 LRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 268 L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~ 343 (384)
|++++|.++. +....++|+.|+++++. +..+.....+|+.|+++++ .+..++...++|+.|++++|.++
T Consensus 347 LdLS~N~Ls~-----LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 347 LSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLT 415 (788)
T ss_pred EecCCCccCC-----CCCCCcccceehhhccc-cccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCC
Confidence 6665555432 11122355555555432 2222222346677777653 33344444456777777776653
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.36 E-value=1.2e-06 Score=89.36 Aligned_cols=201 Identities=21% Similarity=0.183 Sum_probs=91.1
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecCh-H--------------HH
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATD-L--------------VL 189 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~-~--------------~l 189 (384)
.+++.|.+.. +....+|.. .++|++|+++++.+. .|. ..++|+.|++.++.+.. . .+
T Consensus 222 ~~L~~L~L~~--N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 222 AHITTLVIPD--NNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 294 (788)
T ss_pred cCCCEEEccC--CcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence 4677777653 334455542 477888888887665 221 24566677666664411 0 00
Q ss_pred HHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEE
Q 016710 190 QSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR 269 (384)
Q Consensus 190 ~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 269 (384)
..+....|.|+.|+++++... .+.. ..++|+.|.+.++. +..+....++|+.|+++++.....+. ..++|+.|+
T Consensus 295 t~LP~~p~~L~~LdLS~N~L~-~Lp~-lp~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdLS~N~Ls~LP~---lp~~L~~L~ 368 (788)
T PRK15387 295 TSLPVLPPGLQELSVSDNQLA-SLPA-LPSELCKLWAYNNQ-LTSLPTLPSGLQELSVSDNQLASLPT---LPSELYKLW 368 (788)
T ss_pred ccccccccccceeECCCCccc-cCCC-CcccccccccccCc-cccccccccccceEecCCCccCCCCC---CCcccceeh
Confidence 011112245666666555222 1110 11245555555442 11222122366777776654322211 123444444
Q ss_pred eeccccchHHHHH-----------------HhccCCCcceEeecccccccccccCCCcccEEeccccccceeec---ccC
Q 016710 270 FALTHIKDEWLCN-----------------QISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVK---IAA 329 (384)
Q Consensus 270 L~~~~~~~~~~~~-----------------l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~---~~~ 329 (384)
+.++.++. +.. +....++|+.|+++++. +..+.....+|+.|++.+. .+..++ ..+
T Consensus 369 Ls~N~L~~--LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L 444 (788)
T PRK15387 369 AYNNRLTS--LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHL 444 (788)
T ss_pred hhcccccc--CcccccccceEEecCCcccCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccChHHhhc
Confidence 44443321 111 11112344555554443 2222222234555555432 223333 347
Q ss_pred CCCceeEEeccccc
Q 016710 330 SSLSIFKYSGDVIS 343 (384)
Q Consensus 330 ~~L~~L~l~~~~~~ 343 (384)
++|+.|++++|+++
T Consensus 445 ~~L~~LdLs~N~Ls 458 (788)
T PRK15387 445 SSETTVNLEGNPLS 458 (788)
T ss_pred cCCCeEECCCCCCC
Confidence 77888888888764
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.31 E-value=8.9e-08 Score=62.14 Aligned_cols=37 Identities=30% Similarity=0.631 Sum_probs=31.3
Q ss_pred cCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhcc
Q 016710 10 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT 46 (384)
Q Consensus 10 is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~ 46 (384)
|++||+|++.+||++|+.+|+++++.|||+|+++..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.24 E-value=3.3e-06 Score=86.39 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=86.4
Q ss_pred CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ 205 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~ 205 (384)
+..+|+++. .....+|..+ .++|+.|+|+++.+. .+.. .+++|++|++++|.+.. +... -.+.|+.|.|+
T Consensus 179 ~~~~L~L~~--~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKI--LGLTTIPACI--PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTS--IPAT--LPDTIQEMELS 249 (754)
T ss_pred CceEEEeCC--CCcCcCCccc--ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCcccc--CChh--hhccccEEECc
Confidence 445555533 2344555543 246777777776554 2221 23567777777665521 1100 12356666666
Q ss_pred eCCCCceeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccccceecc-------------------ccCccC
Q 016710 206 LCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNL-------------------ASCKFL 265 (384)
Q Consensus 206 ~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~-------------------~~~~~L 265 (384)
+|... .+...-.++|+.|+++.+. +..+.. ..++|+.|+++++.....+..+ ...++|
T Consensus 250 ~N~L~-~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL 327 (754)
T PRK15370 250 INRIT-ELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGL 327 (754)
T ss_pred CCccC-cCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccc
Confidence 65322 1111111255566555432 222221 1235555555554321111100 012455
Q ss_pred cEEEeeccccchHHHHHHhccCCCcceEeecccccccccccC-CCcccEEeccccccceeeccc-CCCCceeEEecccc
Q 016710 266 KYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINIS-SRSLKLLEIYDCLRLVEVKIA-ASSLSIFKYSGDVI 342 (384)
Q Consensus 266 ~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~-~~~L~~L~l~~c~~l~~~~~~-~~~L~~L~l~~~~~ 342 (384)
+.|++.+|.++. +...+ +++|+.|+++++. +..+... .++|++|+|+++ .+..++.. .+.|+.|++++|.+
T Consensus 328 ~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~~sL~~LdLs~N~L 400 (754)
T PRK15370 328 KTLEAGENALTS--LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRN-ALTNLPENLPAALQIMQASRNNL 400 (754)
T ss_pred eeccccCCcccc--CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCC-cCCCCCHhHHHHHHHHhhccCCc
Confidence 555555554332 11111 2456666666553 2222211 245666666654 23333322 12466666666654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.23 E-value=1.7e-06 Score=88.54 Aligned_cols=200 Identities=17% Similarity=0.124 Sum_probs=108.3
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
..++.|++... ....+|..+. ++|+.|++++|.+. .|.. ..++|+.|+|++|.+.. +...+ ...|+.|++
T Consensus 199 ~~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITE--LPERL--PSALQSLDL 269 (754)
T ss_pred cCCcEEEecCC--CCCcCChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence 35666666432 3445665443 46777777776554 2211 13456666666665521 00001 124555555
Q ss_pred eeCCCCceeecCCCCCCceEEecccc--------------------ccceee-ecCCceeEEEEeCcccccceeccccCc
Q 016710 205 QLCPGLKNLELSGLTKLNKFEVCDAE--------------------ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCK 263 (384)
Q Consensus 205 ~~c~~~~~~~i~~~~~L~~L~l~~~~--------------------~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~ 263 (384)
+++. +..+.-.-.++|+.|+++++. .+..+. ...++|+.|.++++.....+..+ .+
T Consensus 270 s~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~ 346 (754)
T PRK15370 270 FHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PP 346 (754)
T ss_pred cCCc-cCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cC
Confidence 5432 211111111245555555442 111111 12356777777766533222222 37
Q ss_pred cCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCC-CcccEEeccccccceeec-------ccCCCCcee
Q 016710 264 FLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYDCLRLVEVK-------IAASSLSIF 335 (384)
Q Consensus 264 ~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~c~~l~~~~-------~~~~~L~~L 335 (384)
+|+.|++++|.++. +...+ .++|+.|++++|. +..+.... ..|+.|++.++. +..++ ..+|.+..|
T Consensus 347 sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 347 ELQVLDVSKNQITV--LPETL--PPTITTLDVSRNA-LTNLPENLPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred cccEEECCCCCCCc--CChhh--cCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEE
Confidence 99999999988652 12212 3689999999986 43333222 478999988653 33332 346889999
Q ss_pred EEeccccc
Q 016710 336 KYSGDVIS 343 (384)
Q Consensus 336 ~l~~~~~~ 343 (384)
.+.+|+++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 99999875
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.23 E-value=4.3e-07 Score=56.62 Aligned_cols=34 Identities=38% Similarity=0.648 Sum_probs=31.5
Q ss_pred CCHHHHHHHhcCCCccceeehhhhhhhhhhhhcc
Q 016710 13 LPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT 46 (384)
Q Consensus 13 LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~ 46 (384)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.18 E-value=7.8e-07 Score=80.06 Aligned_cols=174 Identities=21% Similarity=0.166 Sum_probs=111.4
Q ss_pred CCCCCCeEEeeeeec---ChHHHHHHHcCCCCccEEEeeeCCCCc---------------eeecCCCCCCceEEecccc-
Q 016710 170 KLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGLK---------------NLELSGLTKLNKFEVCDAE- 230 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~~~~---------------~~~i~~~~~L~~L~l~~~~- 230 (384)
.+|.|++|+|+++.+ ....+..++++|..|+.|.|.+|..-. .-.+.+-|.|+.+......
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 455666666666666 345677778888888888888885321 1123344688888777664
Q ss_pred -ccc-----eeeecCCceeEEEEeCcccccce-----eccccCccCcEEEeeccccchH---HHHHHhccCCCcceEeec
Q 016710 231 -ELQ-----RLCIIAQDVQEVSIQGPLPFQCK-----FNLASCKFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIA 296 (384)
Q Consensus 231 -~l~-----~~~~~~p~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~p~L~~L~l~ 296 (384)
+.. ...-..|+|+.+++..+.+.+-. ..+..|++|+.|+|..|.++.. .+...+..+|+|+.|.++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 111 11124578888888766532211 1356689999999988887754 344556777889999999
Q ss_pred ccccc--------cccccCCCcccEEeccccccc-------eeecccCCCCceeEEeccccc
Q 016710 297 GCDDL--------KSINISSRSLKLLEIYDCLRL-------VEVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 297 ~c~~l--------~~~~~~~~~L~~L~l~~c~~l-------~~~~~~~~~L~~L~l~~~~~~ 343 (384)
+|-.- ..+....|+|+.|.+.++.-- .......|.|..|.+++|...
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 88622 223445689999998754311 111134888999999998764
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.18 E-value=2.2e-07 Score=91.31 Aligned_cols=211 Identities=24% Similarity=0.235 Sum_probs=126.6
Q ss_pred hCCCcEEEEEeCCC-CCcccCccccCCCCccEEEecCe-eec-------CCCccCCCCCCeEEeeeee-cChHHHHHHHc
Q 016710 125 GCNVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGL-KLE-------SPRSVKLSSLTKLFLMRVD-ATDLVLQSLLI 194 (384)
Q Consensus 125 ~~~l~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~-~l~-------~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~ 194 (384)
.+.++.+.+..+.. ....+-.....|++|+.|.++++ ... ......+++|+.|++.++. +++..+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 37788887765432 22224445567999999999873 211 1122257999999999998 58889999888
Q ss_pred CCCCccEEEeeeCCCCceee----cCCCCCCceEEecccccc-----ceeeecCCceeEEEEeCccc-------------
Q 016710 195 GCPLIEYLSLQLCPGLKNLE----LSGLTKLNKFEVCDAEEL-----QRLCIIAQDVQEVSIQGPLP------------- 252 (384)
Q Consensus 195 ~~p~Le~L~L~~c~~~~~~~----i~~~~~L~~L~l~~~~~l-----~~~~~~~p~L~~L~l~~~~~------------- 252 (384)
.||+|+.|.+.+|..++... ...+++|++|++.+|..+ ..+...+|+++.|.+.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 89999999988888653222 135788999999999743 23334577777766544321
Q ss_pred -----ccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEecccccccee--e
Q 016710 253 -----FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVE--V 325 (384)
Q Consensus 253 -----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~--~ 325 (384)
.........|++++.+.+..+...+......+.+||+|. ..+..+ ...+.+++.|.+..|..... +
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecccCccccccch
Confidence 001112334556666665555433333344455555552 222111 11112267777777765541 1
Q ss_pred c---ccCCCCceeEEecccc
Q 016710 326 K---IAASSLSIFKYSGDVI 342 (384)
Q Consensus 326 ~---~~~~~L~~L~l~~~~~ 342 (384)
. ..+.+++.+.+.++..
T Consensus 420 ~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 420 RCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred HHHhhhhhccccCCccCccc
Confidence 1 1267777777777654
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=2.3e-06 Score=77.11 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCcEEEEEeCCCCC---cccCccccCCCCccEEEecCeeecCCC----------------ccCCCCCCeEEeeeeec---
Q 016710 127 NVKELSLELLGNPR---FNLPEIILCSNSIEILTLAGLKLESPR----------------SVKLSSLTKLFLMRVDA--- 184 (384)
Q Consensus 127 ~l~~L~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~~~----------------~~~~~~L~~L~L~~~~~--- 184 (384)
.++.++|+....++ ..+-..+.+|.+|++|.|.+|-+.+.. ..+-+.|+++...+++.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 56666664422222 122233445666666666665443110 11345666666666666
Q ss_pred ChHHHHHHHcCCCCccEEEeeeCCCCc-ee-----ecCCCCCCceEEecccc
Q 016710 185 TDLVLQSLLIGCPLIEYLSLQLCPGLK-NL-----ELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 185 ~~~~l~~l~~~~p~Le~L~L~~c~~~~-~~-----~i~~~~~L~~L~l~~~~ 230 (384)
+...+...+..+|.|+++++.++.... .. ....||+|+.|++.+..
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 223444555566666666666653321 11 12245566666666553
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.98 E-value=5.2e-07 Score=90.49 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=75.2
Q ss_pred CCCCCCceEEecccc--ccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcce
Q 016710 216 SGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES 292 (384)
Q Consensus 216 ~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~ 292 (384)
.+.++||.|.+++.. .++.-. ...+.|+.|.++|+.....+..+..++.|+.|...+|.+.- +. -+.++|.|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceE
Confidence 356799999999873 222222 24567888889998755445556678888888887776432 12 3456788888
Q ss_pred Eeeccccccccccc----CCCcccEEeccccccce---eecccCCCCceeEEecc
Q 016710 293 LLIAGCDDLKSINI----SSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGD 340 (384)
Q Consensus 293 L~l~~c~~l~~~~~----~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~ 340 (384)
+|++ |.++..... +.|+||+|++++...+. +....+.++..+++.-+
T Consensus 457 lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 457 LDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred Eecc-cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 8887 444443322 23788888888655332 23344555555555544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.96 E-value=5.3e-06 Score=69.42 Aligned_cols=125 Identities=19% Similarity=0.082 Sum_probs=38.8
Q ss_pred CCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710 150 SNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226 (384)
Q Consensus 150 ~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l 226 (384)
+.++++|+|.++.+. ..... .+.+|+.|+|++|.+ .-+. +..++.|+.|.++++.-..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~--------------- 78 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISS--------------- 78 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S---------------
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCc---------------
Confidence 445677777776665 22222 466677777777665 2222 2335556666665542211
Q ss_pred ccccccce-eeecCCceeEEEEeCccccc--ceeccccCccCcEEEeeccccchH--HHHHHhccCCCcceEeeccc
Q 016710 227 CDAEELQR-LCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 227 ~~~~~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~p~L~~L~l~~c 298 (384)
+.. +...+|+|+.|.++++.... ....+..+|+|+.|++.+|++... .-..++..+|+|+.||-...
T Consensus 79 -----i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 79 -----ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -----cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 100 11134556666665544221 112355678888888887775532 23456677888888876553
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.89 E-value=1.6e-06 Score=85.31 Aligned_cols=163 Identities=21% Similarity=0.209 Sum_probs=102.0
Q ss_pred CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeC-CCCce------eecCCCCCCceEEecccccccee-----e
Q 016710 170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC-PGLKN------LELSGLTKLNKFEVCDAEELQRL-----C 236 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c-~~~~~------~~i~~~~~L~~L~l~~~~~l~~~-----~ 236 (384)
.+++|+.|.+..+.. ++..+..+...||+|++|.+.+| ..... .....+++|+.|++..|..+... .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888866 66667788888888888888873 22211 11234678888888888633333 2
Q ss_pred ecCCceeEEEEeCccc-c--cceeccccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeecccc---cccc------
Q 016710 237 IIAQDVQEVSIQGPLP-F--QCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCD---DLKS------ 303 (384)
Q Consensus 237 ~~~p~L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~---~l~~------ 303 (384)
..||+|+.|.+.++.. . ........|++|++|++.++. +++..+..+...||+|+.|.+..+. .++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 3478888888665552 1 122234568888888888776 4466677777778887777655543 2321
Q ss_pred -----------cccCCCcccEEeccccccc----eeecccCCCC
Q 016710 304 -----------INISSRSLKLLEIYDCLRL----VEVKIAASSL 332 (384)
Q Consensus 304 -----------~~~~~~~L~~L~l~~c~~l----~~~~~~~~~L 332 (384)
....+++|+.+.|..|... ..+..+||+|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 1223467777777655411 1233567777
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.81 E-value=7e-06 Score=68.69 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=24.4
Q ss_pred cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc-----cccccccCCCcccEEecccccc-----ce-eecccC
Q 016710 261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD-----DLKSINISSRSLKLLEIYDCLR-----LV-EVKIAA 329 (384)
Q Consensus 261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~c~~-----l~-~~~~~~ 329 (384)
.++.|+.|++.+|.++.-. ..+...+|+|+.|.+++.. .+..+ ..+|+|++|++.+..- .. .+...+
T Consensus 62 ~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp --TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred ChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 3455555555555543211 1122335556666555432 11111 1345666666653221 11 233457
Q ss_pred CCCceeEEecc
Q 016710 330 SSLSIFKYSGD 340 (384)
Q Consensus 330 ~~L~~L~l~~~ 340 (384)
|+|+.|+-...
T Consensus 140 P~Lk~LD~~~V 150 (175)
T PF14580_consen 140 PSLKVLDGQDV 150 (175)
T ss_dssp TT-SEETTEET
T ss_pred ChhheeCCEEc
Confidence 77777765443
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.3e-05 Score=70.88 Aligned_cols=178 Identities=17% Similarity=0.076 Sum_probs=125.8
Q ss_pred CCCcEEEEEeCCCCCc-ccCccccCCCCccEEEecCeeecCCCc---cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRF-NLPEIILCSNSIEILTLAGLKLESPRS---VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~l~~~~~---~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.++++++|.-....+. ++...+..+|.|+.|+|+.+.+..+.. ....+|++|.|.+...+.+....++...|.+.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 5788888853222222 233444568999999999988774322 367899999999999888899999999999999
Q ss_pred EEeeeCCC----CceeecC-CCCCCceEEecccc-----ccceeeecCCceeEEEEeCcccccc--eeccccCccCcEEE
Q 016710 202 LSLQLCPG----LKNLELS-GLTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLR 269 (384)
Q Consensus 202 L~L~~c~~----~~~~~i~-~~~~L~~L~l~~~~-----~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~ 269 (384)
|.++.+.. ...-.+. -.|.++.|...+|. +...+.--.|++.++.+..+..... .-....+|.+-.|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 98887621 1111122 12578888888887 2333334578899888876652221 12244578888899
Q ss_pred eeccccchHHHHHHhccCCCcceEeecccccccc
Q 016710 270 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS 303 (384)
Q Consensus 270 L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~ 303 (384)
|+.+.+...+-...+.+||.|.-|.+...+-.+.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 9888888777777889999999999998775544
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.2e-05 Score=81.65 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCccEEEeeeCCCCc-ee--ec-CCCCCCceEEecccc----ccceeeecCCceeEEEEeCcccccceeccccCccCcEE
Q 016710 197 PLIEYLSLQLCPGLK-NL--EL-SGLTKLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYL 268 (384)
Q Consensus 197 p~Le~L~L~~c~~~~-~~--~i-~~~~~L~~L~l~~~~----~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L 268 (384)
.+|+.|++++-.... .+ .+ ..+|+|++|.+.+-. .+..+....|||.+|+++++..... ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 356666665532221 11 11 135666666666533 2223333556666666666542221 123445555555
Q ss_pred EeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 269 RFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 269 ~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
.+.+-.+....-..-+.++.+|+.||||.-
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 555544443221222234566666666553
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.1e-05 Score=81.84 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=93.8
Q ss_pred CCccEEEecCeeec---CC--CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710 151 NSIEILTLAGLKLE---SP--RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 225 (384)
Q Consensus 151 ~~L~~L~L~~~~l~---~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~ 225 (384)
.+|++|+++|.... ++ .+.-||+|++|.+.+..+....+..+..++|+|..|+++++......-++.+.+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 67888888884332 22 22358999999999998855557888889999999999987433223345566777777
Q ss_pred ecccccccee----eecCCceeEEEEeCcccccce-e------ccccCccCcEEEeeccccchHHHHHHhccCCCcceEe
Q 016710 226 VCDAEELQRL----CIIAQDVQEVSIQGPLPFQCK-F------NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL 294 (384)
Q Consensus 226 l~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~-~------~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~ 294 (384)
+.+-+-.... .....+|+.|+++........ + .-..+|+|+.|+.++.+++.+.+..++..=|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 6654311100 124567777777765421111 0 1223678888888877777776666666666666665
Q ss_pred ecc
Q 016710 295 IAG 297 (384)
Q Consensus 295 l~~ 297 (384)
+-+
T Consensus 282 ~~~ 284 (699)
T KOG3665|consen 282 ALD 284 (699)
T ss_pred hhh
Confidence 544
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.58 E-value=1.5e-06 Score=70.64 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=25.8
Q ss_pred ceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 241 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 241 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
.|+.|.++++.....+..++.+.+|+.|.+..+++. .+..-++.+..|++|+|.+.
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccc
Confidence 344444444443334444555555555555554421 11222333455555555553
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.31 E-value=9.1e-05 Score=65.77 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=107.5
Q ss_pred cCCCCccEEEecCeeec----------CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCc--ee-
Q 016710 148 LCSNSIEILTLAGLKLE----------SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK--NL- 213 (384)
Q Consensus 148 ~~~~~L~~L~L~~~~l~----------~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~--~~- 213 (384)
.-|..|+.|..++..-+ .+. ...|.+|+++.++.|. ...+..+...=|.|..+.+.+..... .+
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeeccccccccccc
Confidence 34788899988764221 111 1247888888888875 34444445556788888776542210 00
Q ss_pred ----------------------ecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEE
Q 016710 214 ----------------------ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR 269 (384)
Q Consensus 214 ----------------------~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 269 (384)
.+.....|..|++++.. .+..-..-+|.++.|.++.+....+ -++..+++|+.|+
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLD 335 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-hhhhhcccceEee
Confidence 01112345556665543 2222223467777777766542221 1355677777777
Q ss_pred eeccccchHHHHHHhccCCCcceEeeccccccccccc--CCCcccEEeccccc--cceeec--ccCCCCceeEEecccc
Q 016710 270 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI--SSRSLKLLEIYDCL--RLVEVK--IAASSLSIFKYSGDVI 342 (384)
Q Consensus 270 L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~c~--~l~~~~--~~~~~L~~L~l~~~~~ 342 (384)
|++|.++ .+..+-..+-|++.|.+++.. ++.+.. ..-+|.+|++.+.. .+.++. .++|.|+.+.+.+|++
T Consensus 336 LS~N~Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 336 LSGNLLA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cccchhH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 7777653 234444556677777777643 222221 22467777776432 333333 6799999999999976
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.24 E-value=7.8e-05 Score=75.39 Aligned_cols=194 Identities=16% Similarity=0.076 Sum_probs=91.3
Q ss_pred CcccCccccCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce-eecC
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELS 216 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~ 216 (384)
...+|..+....+|+.|+++.+.+. +|... .+.+|+.|+|.++.. ..+..-++...+|+.|+++++..... +.+.
T Consensus 57 ~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 57 ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNHFGPIPLVIE 134 (1081)
T ss_pred cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhccCCCchhHH
Confidence 4455555555566666666655443 22222 456666666665543 11111233344555566555433211 1111
Q ss_pred CCC-------------------CCceEEeccccccceeeecCCceeE-EEEeCcccccceeccccCccCcEEEeeccccc
Q 016710 217 GLT-------------------KLNKFEVCDAEELQRLCIIAQDVQE-VSIQGPLPFQCKFNLASCKFLKYLRFALTHIK 276 (384)
Q Consensus 217 ~~~-------------------~L~~L~l~~~~~l~~~~~~~p~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 276 (384)
.+. +.+.+++........+.+..-+++. +++..+... .+.+..+++|+.++...+.+.
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccc
Confidence 111 2333333332222223333333333 444333321 233444555555555444322
Q ss_pred hHHHHHHhccCCCcceEeecccccccccccCC-CcccEEeccc--cccceeecccCCCCceeEEecccc
Q 016710 277 DEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYD--CLRLVEVKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 277 ~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~--c~~l~~~~~~~~~L~~L~l~~~~~ 342 (384)
. +--.-|+|+.|+.++++..+...... .+|++++++. ..++.+....|++|+.++...|.+
T Consensus 213 ~-----l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 213 E-----LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred e-----EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 1 12234667777777766443222222 3778888773 334445556788888888777765
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00034 Score=62.21 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=94.5
Q ss_pred CCccEEEecCeeecCCCc-----cCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceee-c-CCCCCCc
Q 016710 151 NSIEILTLAGLKLESPRS-----VKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLE-L-SGLTKLN 222 (384)
Q Consensus 151 ~~L~~L~L~~~~l~~~~~-----~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~-i-~~~~~L~ 222 (384)
.-+.-|.+.+|.+...+. ..+..++.|+|.++.+ +.+.+..++.+.|.|+.|+|+.+.-...+. . ....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566666776652222 1578899999999999 777899999999999999998764332111 1 1234899
Q ss_pred eEEecccc----ccceeeecCCceeEEEEeCcccccceec---cc-cCccCcEEEeeccccc-hHHHHHHhccCCCcceE
Q 016710 223 KFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFN---LA-SCKFLKYLRFALTHIK-DEWLCNQISKFPLLESL 293 (384)
Q Consensus 223 ~L~l~~~~----~l~~~~~~~p~L~~L~l~~~~~~~~~~~---~~-~~~~L~~L~L~~~~~~-~~~~~~l~~~~p~L~~L 293 (384)
.|.+.+.. ....+.-..|.++.|+++.+....+.+. .. --+.+++|+...|... +.....+...|||+..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99998875 2333444667777777776531111110 00 1245666666666532 33445566778999988
Q ss_pred eecccc
Q 016710 294 LIAGCD 299 (384)
Q Consensus 294 ~l~~c~ 299 (384)
-+..|+
T Consensus 205 ~v~e~P 210 (418)
T KOG2982|consen 205 FVCEGP 210 (418)
T ss_pred eeecCc
Confidence 888775
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.0006 Score=59.91 Aligned_cols=105 Identities=17% Similarity=0.001 Sum_probs=55.9
Q ss_pred cCCceeEEEEeCccc--ccce---eccccCccCcEEEeeccccchHHHHHH----hccCCCcceEeeccccc-------c
Q 016710 238 IAQDVQEVSIQGPLP--FQCK---FNLASCKFLKYLRFALTHIKDEWLCNQ----ISKFPLLESLLIAGCDD-------L 301 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~--~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~l----~~~~p~L~~L~l~~c~~-------l 301 (384)
+.|.|+.+....+.. .+.. ..+.+-.+|+.+.+..|.+....+.-+ +..+.+|+.|++.+..- +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 456677776665441 1110 112233677777777777665532221 24567777777766431 1
Q ss_pred cccccCCCcccEEecccccc----ceeec-----ccCCCCceeEEecccc
Q 016710 302 KSINISSRSLKLLEIYDCLR----LVEVK-----IAASSLSIFKYSGDVI 342 (384)
Q Consensus 302 ~~~~~~~~~L~~L~l~~c~~----l~~~~-----~~~~~L~~L~l~~~~~ 342 (384)
.......+.|+.|.+.+|.- ..++. ...|+|+.|....+.+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 11222346677777777752 11222 2367777777766654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.08 E-value=0.00016 Score=75.58 Aligned_cols=195 Identities=21% Similarity=0.221 Sum_probs=87.1
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
+.++.|+|+. .....++|..+..+-+|++|++++..+. .|... .+..|.+|++..+..-. .+..+....++|+.|.
T Consensus 571 ~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 571 PLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR 648 (889)
T ss_pred cceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence 4555555543 2234566666666666666666665544 33222 45666666666554300 1122233356666666
Q ss_pred eeeCC-CCcee---ecCCCCCCceEEeccccc--cceeeecCCceeE----EEEeCcccccceeccccCccCcEEEeecc
Q 016710 204 LQLCP-GLKNL---ELSGLTKLNKFEVCDAEE--LQRLCIIAQDVQE----VSIQGPLPFQCKFNLASCKFLKYLRFALT 273 (384)
Q Consensus 204 L~~c~-~~~~~---~i~~~~~L~~L~l~~~~~--l~~~~~~~p~L~~----L~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 273 (384)
+.... ..... .+..+.+|+.|++..+.. +..+ ...+.|.+ +.+.++........+..+.+|+.|.+.++
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence 65432 11111 112233444444433321 0111 12222221 11111111112234556777788877766
Q ss_pred ccchHHHH----HHhc-cCCCcceEeecccccccccc--cCCCcccEEeccccccce
Q 016710 274 HIKDEWLC----NQIS-KFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCLRLV 323 (384)
Q Consensus 274 ~~~~~~~~----~l~~-~~p~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~c~~l~ 323 (384)
...+..+. .... +|+++.++.+..|....... .-.|+|++|.+..|..++
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 65422110 0001 24555555555555443322 233666666666665444
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.04 E-value=0.00011 Score=65.26 Aligned_cols=126 Identities=18% Similarity=0.126 Sum_probs=87.7
Q ss_pred CCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEe
Q 016710 171 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQ 248 (384)
Q Consensus 171 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~ 248 (384)
...|++|+|+++.++ .+..-..-.|.++.|+++++.....-....+++|..|++++.. .+.......-|++.|.+.
T Consensus 283 Wq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 457888889888762 1122233478899999998765433345567899999999875 333334456688888888
Q ss_pred CcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710 249 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 249 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~ 299 (384)
++..... ..++++-+|.+|++.+|.+..-.-.+-++++|.|+++.+.+.+
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 7653221 1355678899999999887665556677899999999998866
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.95 E-value=0.0038 Score=59.04 Aligned_cols=133 Identities=20% Similarity=0.292 Sum_probs=63.0
Q ss_pred CCCCCeEEeeeeecChHHHHHHHcCCC-CccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeC
Q 016710 171 LSSLTKLFLMRVDATDLVLQSLLIGCP-LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG 249 (384)
Q Consensus 171 ~~~L~~L~L~~~~~~~~~l~~l~~~~p-~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~ 249 (384)
+++++.|++++|.+.. + ...| .|++|.+.+|..+..+.-.-.++|+.|.+.+|..+..+ .++|+.|.+.+
T Consensus 51 ~~~l~~L~Is~c~L~s--L----P~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIES--L----PVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCcc--c----CCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCC
Confidence 5667777777664311 1 1222 46777777666553322111236777777766544322 34566666644
Q ss_pred cccccceeccccC-ccCcEEEeeccccchHHHHHHhccC-CCcceEeecccccccccccCCCcccEEeccc
Q 016710 250 PLPFQCKFNLASC-KFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCDDLKSINISSRSLKLLEIYD 318 (384)
Q Consensus 250 ~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~-p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~ 318 (384)
.... .+..+ ++|+.|.+.+..... ...+...+ ++|+.|.+++|..+..-..-..+|++|.+++
T Consensus 122 n~~~----~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 122 SATD----SIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CCCc----ccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 3211 11222 356666654322100 00000112 4677777777764421111124677777764
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.86 E-value=2.5e-05 Score=63.75 Aligned_cols=133 Identities=19% Similarity=0.134 Sum_probs=60.2
Q ss_pred cccCccccCCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeec---
Q 016710 141 FNLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLEL--- 215 (384)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i--- 215 (384)
..+|..+..+++|+.|++.++.+. .|.. .++|.|+.|++.-++. ..+.+=+.++|.||.|++.++.-.+..-.
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccccccccCCcch
Confidence 344444555555555555555444 2222 2455555555543332 00111123455555555555422211100
Q ss_pred CCCCCCceEEeccccccceeee---cCCceeEEEEeCcccccceeccccCccCcEEEeeccccc
Q 016710 216 SGLTKLNKFEVCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK 276 (384)
Q Consensus 216 ~~~~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 276 (384)
-.+..|+-|.+++.. +.-+.- ...+|+.|.+.++.....+-.++.+..|++|++.++.++
T Consensus 124 f~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 124 FYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 112345555555442 111111 223444444444443334455667788888888877643
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.70 E-value=0.0012 Score=44.92 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=20.2
Q ss_pred cccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
+..+++|++|+++++.+..- ....+.++++|++|+++++
T Consensus 21 f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 44456666666665554321 1233455566666666554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.68 E-value=0.00057 Score=67.72 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=115.6
Q ss_pred ccceeEEEEecCCCcCCCchhHHHHHHHHH--hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCc-c--
Q 016710 95 IRLMNFSLFVPGDSLEICLPYIDQCIFYAL--GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRS-V-- 169 (384)
Q Consensus 95 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~--~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~-~-- 169 (384)
.+++.|+...... .+...+.. +.... -...+.+.+.-....++.=|-.++.++.|++|.+.+|.+.-..+ .
T Consensus 55 ~~~~~f~a~~s~~---ads~vl~q-Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 55 APVDYFRAYVSDN---ADSRVLEQ-LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred CCCceeEEecCCc---ccchHHHH-HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH
Confidence 5777777765433 22222222 22222 24555666543222222227778889999999999986551110 0
Q ss_pred -------------------------------CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCC
Q 016710 170 -------------------------------KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGL 218 (384)
Q Consensus 170 -------------------------------~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~ 218 (384)
....|.+.+++++.. ..+..-+.-.|.||.|+|+.++..+.-.+.-|
T Consensus 131 r~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l 208 (1096)
T KOG1859|consen 131 RHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDNLRRL 208 (1096)
T ss_pred HHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHHHHhc
Confidence 112233334444433 11112223357788999988765543345567
Q ss_pred CCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeec
Q 016710 219 TKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 296 (384)
Q Consensus 219 ~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~ 296 (384)
++|++|++++.. .++.+.....+|..|.+.++.... ...+.++.+|..|++++|-+.+..-...+..+..|+.|.+.
T Consensus 209 ~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred ccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 899999999865 555666555568888888765211 12356678888889888766554444444556678888888
Q ss_pred ccc
Q 016710 297 GCD 299 (384)
Q Consensus 297 ~c~ 299 (384)
|.+
T Consensus 288 GNP 290 (1096)
T KOG1859|consen 288 GNP 290 (1096)
T ss_pred CCc
Confidence 854
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.57 E-value=0.016 Score=60.85 Aligned_cols=260 Identities=18% Similarity=0.174 Sum_probs=132.7
Q ss_pred hhhhhhHHHHHHHHHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCC
Q 016710 73 KQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNS 152 (384)
Q Consensus 73 ~~~~~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~ 152 (384)
+.+..-+...|++.|-....-.....+..++ .-...+.-|++......-+. .+-..+.+....|... ....
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~-~~~~ 524 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVK-SWNS 524 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccc-eEEECCcCcccccccc-chhh
Confidence 4555667777777774432210022232222 11133444444433222333 2211111223334332 2345
Q ss_pred ccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEecc
Q 016710 153 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCD 228 (384)
Q Consensus 153 L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~ 228 (384)
.+++.+-++.+. .+....++.|++|-+.++.. -......++...|.|+.|++++|.....+ .|+.+-+||.|++++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 666666665443 45555678899999988752 11222234667899999999988766443 456677999999998
Q ss_pred ccccceeeecC---CceeEEEEeCcccccce-eccccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeeccccc--c
Q 016710 229 AEELQRLCIIA---QDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDD--L 301 (384)
Q Consensus 229 ~~~l~~~~~~~---p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~--l 301 (384)
+. +..++... ..|.+|++..+...... -....+++|++|.+.... ..+.....-+.++.+|+.|.+..... +
T Consensus 605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~ 683 (889)
T KOG4658|consen 605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL 683 (889)
T ss_pred CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH
Confidence 74 33443333 34555555544321111 223447899999886554 22223333345666666666654332 0
Q ss_pred cccccCCCcccEEe----ccccccce--eecccCCCCceeEEeccccc
Q 016710 302 KSINISSRSLKLLE----IYDCLRLV--EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 302 ~~~~~~~~~L~~L~----l~~c~~l~--~~~~~~~~L~~L~l~~~~~~ 343 (384)
+.+ ...++|..+. +..|..-. ......++|+.|.+.++.++
T Consensus 684 e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 684 EDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 111 1123333222 22221111 22355777777777777664
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.55 E-value=0.00024 Score=65.37 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHhccCCCcceEeecccccccccc----cCCCcccEEeccccc--cce-eecccCCCCceeEEeccccc
Q 016710 282 NQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~~ 343 (384)
.-+..+|+|++|++++.. ++.+. .....++.|.+.... .+. .+..+...|++|.++||.++
T Consensus 268 ~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 346677888888887754 32222 233567777776431 222 34467888888888888763
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.53 E-value=0.0012 Score=44.94 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=5.8
Q ss_pred CCCccEEEecCee
Q 016710 150 SNSIEILTLAGLK 162 (384)
Q Consensus 150 ~~~L~~L~L~~~~ 162 (384)
+++|++|+++++.
T Consensus 24 l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 24 LPNLETLDLSNNN 36 (61)
T ss_dssp GTTESEEEETSSS
T ss_pred CCCCCEeEccCCc
Confidence 4444444444443
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.52 E-value=0.0047 Score=58.49 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=91.0
Q ss_pred CCCCccEEEecCeeec-CCCccCCC-CCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710 149 CSNSIEILTLAGLKLE-SPRSVKLS-SLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226 (384)
Q Consensus 149 ~~~~L~~L~L~~~~l~-~~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l 226 (384)
.|+++++|++++|.+. .| .+| +|++|.+.+|.. -..+...+ .+.|+.|.+.+|..+..+ .++|+.|.+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sL----P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGL----PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCccccccc----ccccceEEe
Confidence 3788999999998665 33 344 699999988653 11111111 358999999998655421 248888888
Q ss_pred ccccccceeeecCCceeEEEEeCcccccceeccc-c-CccCcEEEeeccccchHHHHHHhccC-CCcceEeecccc--cc
Q 016710 227 CDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLA-S-CKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCD--DL 301 (384)
Q Consensus 227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~-~-~~~L~~L~L~~~~~~~~~~~~l~~~~-p~L~~L~l~~c~--~l 301 (384)
.. .....+..-.++|+.|.+.+.... ....+. . .++|++|.+.++.... +...+ ..|+.|+++.+. .+
T Consensus 120 ~~-n~~~~L~~LPssLk~L~I~~~n~~-~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n~~~sL 192 (426)
T PRK15386 120 KG-SATDSIKNVPNGLTSLSINSYNPE-NQARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIEQKTTW 192 (426)
T ss_pred CC-CCCcccccCcchHhheeccccccc-cccccccccCCcccEEEecCCCccc-----CcccccccCcEEEecccccccc
Confidence 63 333334444568888887542210 000011 1 2689999998876331 12222 489999987642 22
Q ss_pred cccccCC-CcccEEeccccccc
Q 016710 302 KSINISS-RSLKLLEIYDCLRL 322 (384)
Q Consensus 302 ~~~~~~~-~~L~~L~l~~c~~l 322 (384)
+...... +++ .|.+.+|..+
T Consensus 193 eI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 193 NISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cCccccccccc-Eechhhhccc
Confidence 2122222 466 7777777543
No 49
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.51 E-value=1.7e-05 Score=72.93 Aligned_cols=155 Identities=18% Similarity=0.134 Sum_probs=75.7
Q ss_pred CcccCccccCCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCC
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSG 217 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~ 217 (384)
..++|..++.|.+|..|.+.++.+. ++....+..|++|+...+-. +.+..-+.+...|+.|++..++......+.+
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g 226 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPG 226 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCc
Confidence 4455555555555555555554443 22223455555555544422 1122223344455666666554433334455
Q ss_pred CCCCceEEecccc--cccee-eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEe
Q 016710 218 LTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL 294 (384)
Q Consensus 218 ~~~L~~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~ 294 (384)
|..|++|.++... .++.- ..+.+++..|++.++....++..+.-+.+|..|++++++++. +..-++++ .|+.|.
T Consensus 227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLA 303 (565)
T ss_pred cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehh
Confidence 5566666665442 11111 124556666666665544444445555666666666665432 12223344 455555
Q ss_pred ecccc
Q 016710 295 IAGCD 299 (384)
Q Consensus 295 l~~c~ 299 (384)
+.|.+
T Consensus 304 leGNP 308 (565)
T KOG0472|consen 304 LEGNP 308 (565)
T ss_pred hcCCc
Confidence 55543
No 50
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.49 E-value=2.5e-05 Score=71.88 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=97.0
Q ss_pred CCcccCccccCCCCccEEEecCeeec-CC-CccCCCCCCeEEeeeeec--ChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710 139 PRFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 213 (384)
Q Consensus 139 ~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~L~~c~~~~~~- 213 (384)
....+|..+++..+|++|+.+.+.+. .+ ....+..|+.|+..++.+ ...+ ...|.+|..|.+.++.-.+..
T Consensus 102 ~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~----~~~~~~l~~l~~~~n~l~~l~~ 177 (565)
T KOG0472|consen 102 KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED----MVNLSKLSKLDLEGNKLKALPE 177 (565)
T ss_pred hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH----HHHHHHHHHhhccccchhhCCH
Confidence 34556666666666666665554333 22 222455555555555544 1111 112233444444443211100
Q ss_pred -ecCCCCCCceEEeccccccceeeecC---CceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCC
Q 016710 214 -ELSGLTKLNKFEVCDAEELQRLCIIA---QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPL 289 (384)
Q Consensus 214 -~i~~~~~L~~L~l~~~~~l~~~~~~~---p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~ 289 (384)
.+. ...|++|+.... .+..+.-.. .+|+.|++..+.....+ .+++|..|++|+++.+.+.. --.+....++.
T Consensus 178 ~~i~-m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~ 253 (565)
T KOG0472|consen 178 NHIA-MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNS 253 (565)
T ss_pred HHHH-HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHHHhccccc
Confidence 011 234444443322 122222222 22333333333322223 67788888888887776432 12344567788
Q ss_pred cceEeecccc--cccccccCCCcccEEecccc--ccceeecccCCCCceeEEecccc
Q 016710 290 LESLLIAGCD--DLKSINISSRSLKLLEIYDC--LRLVEVKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 290 L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~ 342 (384)
|..||+.+.+ .+..-.+...+|.+|++++. .++..-..++ +|..|.+.||++
T Consensus 254 l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 8888887754 33333344567888888853 3444444556 788888888876
No 51
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.37 E-value=0.0049 Score=33.83 Aligned_cols=25 Identities=44% Similarity=0.592 Sum_probs=22.8
Q ss_pred CCCeEEeeeeec-ChHHHHHHHcCCC
Q 016710 173 SLTKLFLMRVDA-TDLVLQSLLIGCP 197 (384)
Q Consensus 173 ~L~~L~L~~~~~-~~~~l~~l~~~~p 197 (384)
+||+|+|.++.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 7778999999998
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0012 Score=57.70 Aligned_cols=106 Identities=19% Similarity=0.112 Sum_probs=56.9
Q ss_pred HcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccc-----ccceeeecCCceeEEEEeCccccc--ceeccccCccC
Q 016710 193 LIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFL 265 (384)
Q Consensus 193 ~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~-----~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L 265 (384)
...+-.|+.|++.++.-........+|+|+.|.+++.. .+..+...+|+|+.+.++++.... ..-.+..+++|
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 33444455555555443333333456677777777662 334444456788888777766332 11123445667
Q ss_pred cEEEeeccccch--HHHHHHhccCCCcceEeeccc
Q 016710 266 KYLRFALTHIKD--EWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 266 ~~L~L~~~~~~~--~~~~~l~~~~p~L~~L~l~~c 298 (384)
..|++..|..+. +.-..++.-+|+|+.|+-..+
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777776655331 222344455666666665443
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.17 E-value=0.0022 Score=61.55 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=77.7
Q ss_pred CCCccEEEecCeeec-CCCcc-CC-CCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecC-CCCCCceEE
Q 016710 150 SNSIEILTLAGLKLE-SPRSV-KL-SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNKFE 225 (384)
Q Consensus 150 ~~~L~~L~L~~~~l~-~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~-~~~~L~~L~ 225 (384)
.+.++.|.+.++.+. .+... .+ ++|+.|+++++.+... ..-+..+|.|+.|.+.++......... ..+.|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 456677777665544 23222 33 2677777777665221 122445777777777776544322222 345666666
Q ss_pred eccccccceeee---cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc
Q 016710 226 VCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK 302 (384)
Q Consensus 226 l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~ 302 (384)
+++.. +..+.. ...+|+++.++++........+..+.++..+.+..+...+ +...+..+++++.|+++++. +.
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~-i~ 268 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQ-IS 268 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccc-cc
Confidence 66653 222221 1223555555554322222233444555555544444322 12334455556666665543 11
Q ss_pred cc--ccCCCcccEEeccc
Q 016710 303 SI--NISSRSLKLLEIYD 318 (384)
Q Consensus 303 ~~--~~~~~~L~~L~l~~ 318 (384)
.+ .....+|++|++.+
T Consensus 269 ~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 269 SISSLGSLTNLRELDLSG 286 (394)
T ss_pred ccccccccCccCEEeccC
Confidence 11 22234555555553
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.14 E-value=0.0018 Score=58.32 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=34.6
Q ss_pred ccccCCCC----HHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710 7 IDRISNLP----EPILHHILSFLPFTQTVQTRVLSRTWKRA 43 (384)
Q Consensus 7 ~d~is~LP----deil~~I~s~L~~~~~~~~~~vskrW~~l 43 (384)
-|.|+.|| |+|...||+||+..+++.+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 57789999 99999999999999999999999999863
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.001 Score=58.07 Aligned_cols=88 Identities=22% Similarity=0.169 Sum_probs=59.5
Q ss_pred cCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCC--cee-ecCC
Q 016710 143 LPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL--KNL-ELSG 217 (384)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~--~~~-~i~~ 217 (384)
+....-....|+.|++.++.+. ......+|+||.|.++.+.+ ....+.-++..||+|..|+++++..- ..+ ....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3333334567777777776655 33334688999999999866 55566677778899999999987532 111 1234
Q ss_pred CCCCceEEecccc
Q 016710 218 LTKLNKFEVCDAE 230 (384)
Q Consensus 218 ~~~L~~L~l~~~~ 230 (384)
+++|.+|++..|.
T Consensus 115 l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 115 LENLKSLDLFNCS 127 (260)
T ss_pred hcchhhhhcccCC
Confidence 5678888888886
No 56
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.80 E-value=0.0027 Score=58.72 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec--CCCcc-CCCCCCeEEeee-eec
Q 016710 126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMR-VDA 184 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~-~~~ 184 (384)
+...++.|+ .+....+|...+ ..++|++|+|+.+.+. .+.++ .+++|.+|.+++ +++
T Consensus 67 ~~tveirLd--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 67 PETVEIRLD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred CcceEEEec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 345555554 445677888766 4899999999998776 23333 688888888887 555
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.62 E-value=0.008 Score=57.63 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCCCCcccCccccCCC-CccEEEecCeeec-CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 127 NVKELSLELLGNPRFNLPEIILCSN-SIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~l~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
.+..+.+. ......++......+ +|+.|+++++.+. .+ ....+++|+.|+++++.+.+ +.......+.|+.|.
T Consensus 117 ~l~~L~l~--~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLD--NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecC--CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 45555553 444677777776674 9999999998777 32 44579999999999998622 222233688899999
Q ss_pred eeeCCCCceeec-CCCCCCceEEecccccccee--eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHH
Q 016710 204 LQLCPGLKNLEL-SGLTKLNKFEVCDAEELQRL--CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWL 280 (384)
Q Consensus 204 L~~c~~~~~~~i-~~~~~L~~L~l~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 280 (384)
++++........ .....|++|.+.+...+... .-...++..+.+...........++.+++++.|++.++.+++-..
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 998754322121 23335888888877411111 113344444443333222223345667889999999888765332
Q ss_pred HHHhccCCCcceEeecccc
Q 016710 281 CNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 281 ~~l~~~~p~L~~L~l~~c~ 299 (384)
+....+++.|++++..
T Consensus 273 ---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 273 ---LGSLTNLRELDLSGNS 288 (394)
T ss_pred ---ccccCccCEEeccCcc
Confidence 6778899999998854
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.30 E-value=0.025 Score=47.81 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=55.8
Q ss_pred CCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCc-----eeecCCCC
Q 016710 149 CSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLK-----NLELSGLT 219 (384)
Q Consensus 149 ~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~-----~~~i~~~~ 219 (384)
..++|..|.+.++.+. .+. ...+|+|++|.|.++.+ .-..+.. +..||.|++|.+-++...+ ...+-.+|
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4688888989887665 222 22688999999999887 5555555 4568999999998875442 22233467
Q ss_pred CCceEEecccc
Q 016710 220 KLNKFEVCDAE 230 (384)
Q Consensus 220 ~L~~L~l~~~~ 230 (384)
+|+.|++....
T Consensus 141 ~l~~LDF~kVt 151 (233)
T KOG1644|consen 141 SLRTLDFQKVT 151 (233)
T ss_pred cceEeehhhhh
Confidence 77777777654
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0057 Score=51.55 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=49.4
Q ss_pred cccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeecccccccccccC----CCcccEEeccccccce
Q 016710 259 LASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSINIS----SRSLKLLEIYDCLRLV 323 (384)
Q Consensus 259 ~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~----~~~L~~L~l~~c~~l~ 323 (384)
+..++.++.|.+.+|. +.|..+..+-+-.|+|+.|+|++|+.++..+.. +++|+.|.|.+...+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4557788888888887 555666666667899999999999988876543 4889999888765443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.03 E-value=0.024 Score=35.61 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=22.1
Q ss_pred ccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710 263 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 263 ~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~ 299 (384)
++|++|++.++.+++ +...+.++++|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 467777777777654 34446677777777777764
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.01 E-value=0.033 Score=34.99 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=25.4
Q ss_pred CceeEEEEeCcccccceeccccCccCcEEEeeccccch
Q 016710 240 QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 240 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 277 (384)
|+|++|++.++.....+..+..+++|+.|+++++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 46778888777655554446778888888888777653
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.75 E-value=0.012 Score=52.79 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=29.3
Q ss_pred cCCCCHHHHHHHhc-----CCCccceeehhhhhhhhhh
Q 016710 10 ISNLPEPILHHILS-----FLPFTQTVQTRVLSRTWKR 42 (384)
Q Consensus 10 is~LPdeil~~I~s-----~L~~~~~~~~~~vskrW~~ 42 (384)
|+.|||||+..||. .++.+++.++++|||.|..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 67899999999997 4567999999999999975
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.52 E-value=0.0071 Score=60.31 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=46.6
Q ss_pred cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc--cccccccCCCcccEEeccccccceeec--ccCCCCceeE
Q 016710 261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFK 336 (384)
Q Consensus 261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~ 336 (384)
-+|.|+.|+|+.|++++.. .+..|+.|++|||++.. .+..+....-+|..|.++|. .++.+. .++.+|+-|+
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhhHHhhhhhhccc
Confidence 3688899999988887633 56678999999998732 33333333334666666642 122111 3455555555
Q ss_pred Eecccc
Q 016710 337 YSGDVI 342 (384)
Q Consensus 337 l~~~~~ 342 (384)
+++|-+
T Consensus 261 lsyNll 266 (1096)
T KOG1859|consen 261 LSYNLL 266 (1096)
T ss_pred hhHhhh
Confidence 555543
No 64
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.89 E-value=0.025 Score=52.90 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.6
Q ss_pred ccCCCCHHHHHHHhcCCC-ccceeehhhhhhhhhhhhcc
Q 016710 9 RISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRAWHT 46 (384)
Q Consensus 9 ~is~LPdeil~~I~s~L~-~~~~~~~~~vskrW~~lw~~ 46 (384)
.+++||+|+|..|.++|+ .-|+++.+.|||.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 367999999999999996 57999999999999986543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.0026 Score=56.22 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=16.5
Q ss_pred CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeee
Q 016710 170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQL 206 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~ 206 (384)
.|.+|+.|.|..+.+ +-..+.. +.+.|+|+.|+|..
T Consensus 61 rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~E 97 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDE 97 (388)
T ss_pred HHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhcc
Confidence 344455555544444 2223322 34455555555554
No 66
>PLN03150 hypothetical protein; Provisional
Probab=93.80 E-value=0.12 Score=52.60 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=37.8
Q ss_pred eeEEEEeCccc-ccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc---cccccCCCcccEEecc
Q 016710 242 VQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIY 317 (384)
Q Consensus 242 L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~ 317 (384)
++.|++.++.. ...+..+..+++|+.|+|+++.+... +...+..+++|+.|+++++..- ......+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 44444444331 11223345566666666666655432 2233455666666666665421 1222344566666666
Q ss_pred cc
Q 016710 318 DC 319 (384)
Q Consensus 318 ~c 319 (384)
++
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 54
No 67
>PLN03150 hypothetical protein; Provisional
Probab=93.79 E-value=0.084 Score=53.82 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=48.4
Q ss_pred CceEEeccccc---cceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeec
Q 016710 221 LNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 296 (384)
Q Consensus 221 L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~ 296 (384)
+..|.+.++.- +..-....++|+.|+++++... ..+..+..+++|+.|+|++|.++.. +...+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence 56666666541 1111124567788887776532 3333466778888888887776543 23445677888888887
Q ss_pred ccc
Q 016710 297 GCD 299 (384)
Q Consensus 297 ~c~ 299 (384)
++.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 765
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.63 E-value=0.22 Score=42.22 Aligned_cols=78 Identities=18% Similarity=0.104 Sum_probs=48.3
Q ss_pred CCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec--ChHHHHHHHcCCCCccEEEeeeCCCCce---eecCCCCCCce
Q 016710 150 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKN---LELSGLTKLNK 223 (384)
Q Consensus 150 ~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~L~~c~~~~~---~~i~~~~~L~~ 223 (384)
......++|+.+.+. ......++.|.+|.|.++.+ -+..+. ...|+|..|.+.++...+. .....||+|+.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccce
Confidence 345566777776554 33344688899999999888 233333 3477888888887643321 12345666666
Q ss_pred EEecccc
Q 016710 224 FEVCDAE 230 (384)
Q Consensus 224 L~l~~~~ 230 (384)
|++.+.+
T Consensus 118 Ltll~Np 124 (233)
T KOG1644|consen 118 LTLLGNP 124 (233)
T ss_pred eeecCCc
Confidence 6666553
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.028 Score=47.45 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=41.2
Q ss_pred CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceee---cCCCCCCceEEecccc
Q 016710 170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKFEVCDAE 230 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i~~~~~L~~L~l~~~~ 230 (384)
.++.++.|.+.+|.. ++..++.+-...|+|+.|.|++|..+++-- +..+++|+.|.+.+-+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 567777777887777 777787777777788888888777664321 2234566666666543
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.36 E-value=0.3 Score=43.40 Aligned_cols=175 Identities=19% Similarity=0.048 Sum_probs=95.7
Q ss_pred CCCCCCeEEeeeeec---ChHHHHHHHcCCCCccEEEeeeCCCC--c-------------eeecCCCCCCceEEecccc-
Q 016710 170 KLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGL--K-------------NLELSGLTKLNKFEVCDAE- 230 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~~~--~-------------~~~i~~~~~L~~L~l~~~~- 230 (384)
.||.|++.+|+++.+ ...-+..++++...|+.|.+++|..- . .-.+..-|.|+........
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 445555555555554 22334455555566666666665321 0 0122334666666655543
Q ss_pred -ccc----eeee-cCCceeEEEEeCcccccc------eeccccCccCcEEEeeccccchHHH---HHHhccCCCcceEee
Q 016710 231 -ELQ----RLCI-IAQDVQEVSIQGPLPFQC------KFNLASCKFLKYLRFALTHIKDEWL---CNQISKFPLLESLLI 295 (384)
Q Consensus 231 -~l~----~~~~-~~p~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~p~L~~L~l 295 (384)
+.+ .... .-.+|..+++-.+...+- ...+..+.+|+.|+|..|.++...- ...+..-++|+.|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 100 0001 114677777755543221 1123457899999999998876532 234455678999999
Q ss_pred cccccc----ccc----c-cCCCcccEEeccccc---------cceee-cccCCCCceeEEecccccc
Q 016710 296 AGCDDL----KSI----N-ISSRSLKLLEIYDCL---------RLVEV-KIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 296 ~~c~~l----~~~----~-~~~~~L~~L~l~~c~---------~l~~~-~~~~~~L~~L~l~~~~~~~ 344 (384)
.+|-.- ... . ...|+|..|...... ++..+ ..+.|-|..|.+.||.+.+
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 998521 111 1 134888888876321 11111 1468889999999887643
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.016 Score=51.31 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=59.4
Q ss_pred CCceEEeccccccceeee--cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecc
Q 016710 220 KLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG 297 (384)
Q Consensus 220 ~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~ 297 (384)
+.++|..++|. +.++.+ .+|.|+.|.++-+.... ...+..|.+|++|+|..|.+.+-.-...+.++|+|+.|.|..
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 55666666663 333333 57777777776554221 123556888999988777766655567778889999998887
Q ss_pred cccccc--------cccCCCcccEEe
Q 016710 298 CDDLKS--------INISSRSLKLLE 315 (384)
Q Consensus 298 c~~l~~--------~~~~~~~L~~L~ 315 (384)
.+=... .....|+|+.|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 442211 222457888776
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.05 E-value=0.073 Score=51.44 Aligned_cols=102 Identities=19% Similarity=0.078 Sum_probs=62.3
Q ss_pred cccCCCCccEEEecCeeec-CCC-ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCc
Q 016710 146 IILCSNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLN 222 (384)
Q Consensus 146 ~l~~~~~L~~L~L~~~~l~-~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~ 222 (384)
.+..+++|+.|++.++.+. ... ...+++|++|+++++.+ +...+. .++.|+.|++.++..........++.|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhh
Confidence 3455788888888887776 333 34688888888888887 444433 3445888888887554333333456777
Q ss_pred eEEecccc--cccee-eecCCceeEEEEeCcc
Q 016710 223 KFEVCDAE--ELQRL-CIIAQDVQEVSIQGPL 251 (384)
Q Consensus 223 ~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~ 251 (384)
.++++++. .+... ....++++.+.+.++.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 77777765 11110 1334455555555543
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.01 E-value=0.16 Score=50.50 Aligned_cols=40 Identities=35% Similarity=0.550 Sum_probs=36.3
Q ss_pred CCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710 4 LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA 43 (384)
Q Consensus 4 ~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~l 43 (384)
....|.++.||-|+..+||+||+.++++++++||+.|+..
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3456889999999999999999999999999999999864
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.91 E-value=0.16 Score=49.10 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=88.3
Q ss_pred CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEe
Q 016710 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L 204 (384)
++..+++. .+...++...+..+++|++|+++++.+. ......++.|+.|++.++.+ +...+. .++.|+.+.+
T Consensus 96 ~l~~l~l~--~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~----~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLY--DNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLE----SLKSLKLLDL 169 (414)
T ss_pred ceeeeecc--ccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCc----cchhhhcccC
Confidence 44444442 3333444443566899999999998877 34444677899999999987 333332 3778888888
Q ss_pred eeCCCCceee--cCCCCCCceEEeccccccceeee--cCCceeEEEEeCcccccceeccccCcc--CcEEEeeccccchH
Q 016710 205 QLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKF--LKYLRFALTHIKDE 278 (384)
Q Consensus 205 ~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~--L~~L~L~~~~~~~~ 278 (384)
.++....... ...+.+++.+.+.+.. +..+.. ..-.+..+++.++.... ...+..... |+.+++.++.+...
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~-~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISK-LEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhccccccee-ccCcccchhHHHHHHhcccCccccc
Confidence 8876553333 3556688888888764 111110 11111112222221100 001112222 67777777665432
Q ss_pred HHHHHhccCCCcceEeecc
Q 016710 279 WLCNQISKFPLLESLLIAG 297 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~~ 297 (384)
. ..+..+++++.|++..
T Consensus 248 ~--~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 248 P--EGLENLKNLPVLDLSS 264 (414)
T ss_pred c--ccccccccccccchhh
Confidence 1 3345566777777665
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.65 E-value=0.7 Score=25.07 Aligned_cols=21 Identities=38% Similarity=0.319 Sum_probs=11.2
Q ss_pred CCCCeEEeeeeec-ChHHHHHH
Q 016710 172 SSLTKLFLMRVDA-TDLVLQSL 192 (384)
Q Consensus 172 ~~L~~L~L~~~~~-~~~~l~~l 192 (384)
++|+.|++++|.. ++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4555555555543 55555543
No 76
>PF13013 F-box-like_2: F-box-like domain
Probab=83.66 E-value=0.53 Score=35.93 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHhcCCCccceeehhhhhh
Q 016710 10 ISNLPEPILHHILSFLPFTQTVQTRVLSR 38 (384)
Q Consensus 10 is~LPdeil~~I~s~L~~~~~~~~~~vsk 38 (384)
+.+||+||+..||.+-+..++......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 66899999999999999999988888877
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=83.02 E-value=0.031 Score=54.38 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=35.6
Q ss_pred ceeEEEEeCcccccceeccccCccCcEEEeeccccchHH-HHHHhccCCCcceEeeccc
Q 016710 241 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEW-LCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 241 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~~~p~L~~L~l~~c 298 (384)
.|.+|+++.+.....++.+..+..|++|.|.+|.+..-. -...-+...-.+.|++.-|
T Consensus 212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 467777777776667777777888888888877754321 1111223344556666555
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.75 E-value=1.2 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=13.1
Q ss_pred CccCcEEEeeccccchHHHHHH
Q 016710 262 CKFLKYLRFALTHIKDEWLCNQ 283 (384)
Q Consensus 262 ~~~L~~L~L~~~~~~~~~~~~l 283 (384)
+++|++|+|+++.++++.+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677888888777776665443
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=78.66 E-value=0.18 Score=49.25 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=49.5
Q ss_pred CcccCccccCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-ecC
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-ELS 216 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-~i~ 216 (384)
...+|..+..|+ |+.|-++++.+. .|... ..+.|..|+.++|.+ ..+..-+.....|++|++..+...... ...
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 344555544443 555555554443 22111 455555555555543 122222333445566666555433211 112
Q ss_pred CCCCCceEEeccccccceeee---cCCceeEEEEeCcc
Q 016710 217 GLTKLNKFEVCDAEELQRLCI---IAQDVQEVSIQGPL 251 (384)
Q Consensus 217 ~~~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~ 251 (384)
.+ .|.+|+++ |..+..+.+ .+.+|+.|.+..+.
T Consensus 210 ~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 SL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CC-ceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence 33 66666666 334444443 34556666665554
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=78.21 E-value=2 Score=22.20 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=3.5
Q ss_pred cceEeeccc
Q 016710 290 LESLLIAGC 298 (384)
Q Consensus 290 L~~L~l~~c 298 (384)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 333344333
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.09 E-value=1.5 Score=21.11 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=2.6
Q ss_pred cceEeecc
Q 016710 290 LESLLIAG 297 (384)
Q Consensus 290 L~~L~l~~ 297 (384)
|+.|++++
T Consensus 3 L~~L~l~~ 10 (17)
T PF13504_consen 3 LRTLDLSN 10 (17)
T ss_dssp -SEEEETS
T ss_pred cCEEECCC
Confidence 33333333
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.75 E-value=2.7 Score=32.73 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=3.9
Q ss_pred CCCCccEEEee
Q 016710 195 GCPLIEYLSLQ 205 (384)
Q Consensus 195 ~~p~Le~L~L~ 205 (384)
.|..|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 44455555544
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.61 E-value=3.5 Score=32.08 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred CCCCccEEEecCe--eecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710 149 CSNSIEILTLAGL--KLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ 205 (384)
Q Consensus 149 ~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~ 205 (384)
.|++|+.+.+... .+.......+++|+.+++......-. ...+..|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeeccccccccccc
Confidence 4667777777642 11111122455666666654211100 1123445556666653
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.24 E-value=4.6 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=16.3
Q ss_pred CCCCeEEeeeeecChHHHHHHH
Q 016710 172 SSLTKLFLMRVDATDLVLQSLL 193 (384)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~l~ 193 (384)
++|++|+|+++.++++....+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688888888888777666554
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=58.46 E-value=1.1 Score=35.78 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=17.6
Q ss_pred CCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCC
Q 016710 171 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 208 (384)
Q Consensus 171 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 208 (384)
||.+++|+|.++.+.+--.+ +...|.|+.|++..+.
T Consensus 76 f~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP 111 (177)
T ss_pred cchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence 45555555555554222222 3445555555555543
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=53.03 E-value=6.4 Score=29.30 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.2
Q ss_pred cccCCCCHHHHHHHhcCCCcccee
Q 016710 8 DRISNLPEPILHHILSFLPFTQTV 31 (384)
Q Consensus 8 d~is~LPdeil~~I~s~L~~~~~~ 31 (384)
..++.||.||-.+|+++|+-.|+.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 568889999999999999988763
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.54 E-value=10 Score=37.44 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=34.4
Q ss_pred CCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCC--ce---eecCCCCCCceEEecccc
Q 016710 170 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL--KN---LELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~--~~---~~i~~~~~L~~L~l~~~~ 230 (384)
.+|.+..++|++++. .-+.+..+.+..|+|..|+|+++... .. .++.+ .-|++|.+.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCc
Confidence 466666666766666 55666666666777777777665211 11 12223 256666666654
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=42.75 E-value=6.5 Score=34.92 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=36.8
Q ss_pred cCCCCHHHHHHHhcCCC-ccceeehhhhhhhh------hhhhcccceeeeccccc
Q 016710 10 ISNLPEPILHHILSFLP-FTQTVQTRVLSRTW------KRAWHTFSVLKFDSDFF 57 (384)
Q Consensus 10 is~LPdeil~~I~s~L~-~~~~~~~~~vskrW------~~lw~~~~~l~~~~~~~ 57 (384)
+.+||.|++..|+-+|+ -+|+..+++|-..- +.+|+..-.+.|....+
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 67999999999999996 79999998876555 35677666555655543
No 89
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=33.85 E-value=11 Score=30.33 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=42.5
Q ss_pred CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec-CCC-ccCCCCCCeEEeeeeec
Q 016710 126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDA 184 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~-~~~-~~~~~~L~~L~L~~~~~ 184 (384)
++.+-..++..++....+|..+. ..+.++.|+++++.+. +|. .+.+|.|+.|++..+.+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 44444445555666677777654 3678999999998776 443 44799999999999987
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=32.39 E-value=30 Score=18.26 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.1
Q ss_pred CCCCceeEEeccccc
Q 016710 329 ASSLSIFKYSGDVIS 343 (384)
Q Consensus 329 ~~~L~~L~l~~~~~~ 343 (384)
+++|++|++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 367888888888663
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=32.39 E-value=30 Score=18.26 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.1
Q ss_pred CCCCceeEEeccccc
Q 016710 329 ASSLSIFKYSGDVIS 343 (384)
Q Consensus 329 ~~~L~~L~l~~~~~~ 343 (384)
+++|++|++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 367888888888663
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.60 E-value=51 Score=32.75 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=5.9
Q ss_pred CCCccEEEecCe
Q 016710 150 SNSIEILTLAGL 161 (384)
Q Consensus 150 ~~~L~~L~L~~~ 161 (384)
.|+|+.|+|+++
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 445555555544
Done!