Query 016710
Match_columns 384
No_of_seqs 172 out of 2276
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 2.9E-24 1E-28 199.9 6.4 279 6-343 5-306 (336)
2 3ogk_B Coronatine-insensitive 99.9 5.3E-23 1.8E-27 205.9 11.9 284 1-296 1-326 (592)
3 2p1m_B Transport inhibitor res 99.9 8.7E-24 3E-28 211.6 4.3 37 7-43 3-40 (594)
4 4fcg_A Uncharacterized protein 99.6 2.7E-15 9.1E-20 139.0 15.4 215 122-341 77-312 (328)
5 2ast_B S-phase kinase-associat 99.6 2.5E-15 8.6E-20 139.3 9.1 220 117-340 37-282 (336)
6 4fcg_A Uncharacterized protein 99.5 6.9E-14 2.3E-18 129.4 11.5 190 150-343 80-290 (328)
7 4fmz_A Internalin; leucine ric 99.5 3.8E-13 1.3E-17 125.2 13.0 207 125-343 109-324 (347)
8 4fmz_A Internalin; leucine ric 99.5 6.9E-13 2.4E-17 123.4 14.2 188 147-343 106-300 (347)
9 3ogk_B Coronatine-insensitive 99.4 3.1E-13 1.1E-17 134.9 9.5 200 143-345 285-528 (592)
10 3t6q_A CD180 antigen; protein- 99.4 9E-13 3.1E-17 132.0 11.6 214 126-342 278-512 (606)
11 1h6u_A Internalin H; cell adhe 99.4 2.3E-12 7.8E-17 118.1 13.3 187 126-344 41-231 (308)
12 2z80_A TOLL-like receptor 2, v 99.4 3.8E-12 1.3E-16 118.8 15.2 170 126-299 52-233 (353)
13 3zyi_A Leucine-rich repeat-con 99.4 2.7E-12 9.4E-17 123.9 13.5 211 126-342 75-302 (452)
14 1ogq_A PGIP-2, polygalacturona 99.4 2.1E-12 7.1E-17 118.6 11.3 215 126-343 50-281 (313)
15 3vq2_A TLR4, TOLL-like recepto 99.4 6.3E-13 2.2E-17 133.1 8.0 174 170-343 348-534 (606)
16 2p1m_B Transport inhibitor res 99.4 1.4E-12 4.8E-17 130.2 10.4 107 95-207 105-221 (594)
17 3zyj_A Leucine-rich repeat-con 99.4 3.4E-12 1.1E-16 122.9 12.4 211 126-342 64-291 (440)
18 1o6v_A Internalin A; bacterial 99.4 1.1E-11 3.7E-16 120.2 16.0 102 239-344 286-389 (466)
19 1o6v_A Internalin A; bacterial 99.4 7E-12 2.4E-16 121.6 14.4 206 125-343 155-366 (466)
20 2z66_A Variable lymphocyte rec 99.4 9.5E-13 3.2E-17 120.4 7.6 38 261-298 148-185 (306)
21 3bz5_A Internalin-J, INLJ; leu 99.3 8.4E-12 2.9E-16 120.7 14.4 199 126-340 64-264 (457)
22 1ogq_A PGIP-2, polygalacturona 99.3 1.6E-12 5.6E-17 119.3 8.9 214 125-341 75-302 (313)
23 3rgz_A Protein brassinosteroid 99.3 2.1E-12 7.3E-17 132.9 10.7 168 126-298 100-279 (768)
24 2id5_A Lingo-1, leucine rich r 99.3 5.8E-12 2E-16 122.4 13.1 194 147-342 124-332 (477)
25 1ozn_A Reticulon 4 receptor; N 99.3 6E-12 2.1E-16 113.8 11.6 199 140-343 23-238 (285)
26 3v47_A TOLL-like receptor 5B a 99.3 2.8E-12 9.6E-17 123.8 10.0 83 259-343 295-384 (455)
27 2z63_A TOLL-like receptor 4, v 99.3 3.6E-12 1.2E-16 126.5 10.8 211 126-343 282-507 (570)
28 3o6n_A APL1; leucine-rich repe 99.3 1.2E-11 4E-16 117.1 13.8 211 126-344 93-332 (390)
29 3bz5_A Internalin-J, INLJ; leu 99.3 1.4E-11 4.7E-16 119.1 14.5 224 95-343 64-299 (457)
30 3rgz_A Protein brassinosteroid 99.3 3.6E-12 1.2E-16 131.2 11.1 193 126-319 74-279 (768)
31 2z63_A TOLL-like receptor 4, v 99.3 2.8E-12 9.7E-17 127.3 9.5 212 127-343 305-531 (570)
32 3vq2_A TLR4, TOLL-like recepto 99.3 4.3E-12 1.5E-16 127.1 10.4 125 218-343 375-510 (606)
33 2z66_A Variable lymphocyte rec 99.3 1.1E-12 3.9E-17 119.8 5.5 214 126-344 28-262 (306)
34 3oja_B Anopheles plasmodium-re 99.3 6.6E-12 2.2E-16 125.6 11.3 84 259-344 250-338 (597)
35 3o53_A Protein LRIM1, AGAP0063 99.3 5.8E-12 2E-16 115.8 9.8 205 126-343 34-250 (317)
36 1xku_A Decorin; proteoglycan, 99.3 2.4E-11 8.4E-16 112.2 13.7 187 126-318 76-272 (330)
37 3v47_A TOLL-like receptor 5B a 99.3 8.9E-12 3E-16 120.3 11.1 105 238-344 297-409 (455)
38 2id5_A Lingo-1, leucine rich r 99.3 2.2E-11 7.6E-16 118.3 13.9 213 126-343 80-309 (477)
39 4eco_A Uncharacterized protein 99.3 9.9E-12 3.4E-16 125.2 11.2 173 125-299 205-413 (636)
40 2ca6_A RAN GTPase-activating p 99.3 2.1E-12 7.1E-17 122.1 5.6 199 147-345 56-318 (386)
41 3oja_A Leucine-rich immune mol 99.3 1.2E-11 3.9E-16 120.7 10.7 205 126-343 34-250 (487)
42 3o6n_A APL1; leucine-rich repe 99.3 2.5E-11 8.7E-16 114.7 12.8 208 126-344 117-353 (390)
43 3t6q_A CD180 antigen; protein- 99.3 2.7E-11 9.1E-16 121.3 12.6 212 128-343 256-489 (606)
44 3oja_A Leucine-rich immune mol 99.3 1.4E-11 4.7E-16 120.2 10.0 187 150-344 33-228 (487)
45 1xku_A Decorin; proteoglycan, 99.2 4.2E-11 1.4E-15 110.6 12.6 209 126-344 52-277 (330)
46 3zyi_A Leucine-rich repeat-con 99.2 1.7E-11 5.7E-16 118.4 10.2 200 137-343 63-279 (452)
47 3zyj_A Leucine-rich repeat-con 99.2 1.6E-11 5.6E-16 118.1 10.0 199 137-343 52-268 (440)
48 3o53_A Protein LRIM1, AGAP0063 99.2 1.5E-11 5.2E-16 113.0 9.1 187 149-343 32-227 (317)
49 1z7x_W Ribonuclease inhibitor; 99.2 1.2E-11 4.1E-16 119.5 8.8 84 125-208 27-124 (461)
50 3oja_B Anopheles plasmodium-re 99.2 3.7E-11 1.3E-15 120.1 12.5 210 126-343 123-358 (597)
51 1wwl_A Monocyte differentiatio 99.2 2E-12 6.8E-17 118.7 2.9 194 149-344 93-310 (312)
52 3g06_A SSPH2 (leucine-rich rep 99.2 1.4E-10 5E-15 115.8 16.1 198 126-343 61-274 (622)
53 4ecn_A Leucine-rich repeat pro 99.2 3.4E-11 1.2E-15 124.5 11.8 171 126-299 448-655 (876)
54 3rfs_A Internalin B, repeat mo 99.2 1.5E-11 5E-16 110.6 7.8 187 126-342 41-234 (272)
55 1h6u_A Internalin H; cell adhe 99.2 8.9E-11 3E-15 107.4 12.9 164 125-299 62-228 (308)
56 2z62_A TOLL-like receptor 4, v 99.2 6.1E-11 2.1E-15 106.6 10.8 199 140-343 19-237 (276)
57 1z7x_W Ribonuclease inhibitor; 99.2 2.7E-12 9.1E-17 124.1 1.5 151 127-277 4-184 (461)
58 2z80_A TOLL-like receptor 2, v 99.2 1.1E-11 3.6E-16 115.8 5.3 228 137-370 40-318 (353)
59 2ca6_A RAN GTPase-activating p 99.2 1.7E-11 5.9E-16 115.8 6.3 204 141-344 22-288 (386)
60 1ozn_A Reticulon 4 receptor; N 99.2 5.7E-11 1.9E-15 107.3 9.1 189 126-319 32-235 (285)
61 1jl5_A Outer protein YOPM; leu 99.2 4.4E-10 1.5E-14 108.5 15.4 76 198-275 174-249 (454)
62 2z81_A CD282 antigen, TOLL-lik 99.2 4.8E-10 1.6E-14 110.7 16.0 212 126-341 26-262 (549)
63 2z7x_B TOLL-like receptor 1, v 99.2 2E-10 7E-15 112.7 13.3 62 238-299 322-385 (520)
64 3g06_A SSPH2 (leucine-rich rep 99.2 4E-10 1.4E-14 112.6 15.4 194 126-343 81-297 (622)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.1E-10 7.2E-15 113.8 13.4 123 220-343 332-486 (562)
66 4eco_A Uncharacterized protein 99.2 2.8E-11 9.5E-16 121.9 7.0 209 126-342 330-578 (636)
67 1p9a_G Platelet glycoprotein I 99.1 2.2E-10 7.4E-15 103.9 11.7 190 148-342 7-207 (290)
68 2z81_A CD282 antigen, TOLL-lik 99.1 1.6E-10 5.5E-15 114.1 11.6 81 126-209 74-160 (549)
69 4glp_A Monocyte differentiatio 99.1 5.2E-11 1.8E-15 109.1 7.4 83 260-344 221-308 (310)
70 2ft3_A Biglycan; proteoglycan, 99.1 8.9E-11 3E-15 108.5 9.1 39 259-298 213-251 (332)
71 4ecn_A Leucine-rich repeat pro 99.1 7.9E-11 2.7E-15 121.8 9.4 210 126-342 548-818 (876)
72 2xwt_C Thyrotropin receptor; s 99.1 2.6E-10 8.7E-15 100.3 11.1 184 152-340 32-236 (239)
73 2ft3_A Biglycan; proteoglycan, 99.1 1.1E-10 3.7E-15 108.0 8.7 209 126-344 54-278 (332)
74 3rfs_A Internalin B, repeat mo 99.1 4.1E-11 1.4E-15 107.6 5.3 165 125-318 62-231 (272)
75 1h6t_A Internalin B; cell adhe 99.1 2.6E-10 8.9E-15 103.4 10.4 98 126-229 46-144 (291)
76 2xwt_C Thyrotropin receptor; s 99.1 4E-10 1.4E-14 99.0 11.1 191 126-321 31-238 (239)
77 4glp_A Monocyte differentiatio 99.1 1.2E-10 4.2E-15 106.5 7.2 214 96-319 65-304 (310)
78 1m9s_A Internalin B; cell inva 99.1 3.1E-10 1E-14 113.2 10.5 164 125-299 42-208 (605)
79 1wwl_A Monocyte differentiatio 99.1 9.5E-11 3.3E-15 107.4 6.3 201 142-345 56-289 (312)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 7.1E-10 2.4E-14 110.0 12.7 82 260-342 350-440 (562)
81 1ziw_A TOLL-like receptor 3; i 99.1 1.4E-10 5E-15 117.6 7.5 104 238-343 478-597 (680)
82 3j0a_A TOLL-like receptor 5; m 99.1 4.7E-10 1.6E-14 116.6 11.6 79 263-342 266-350 (844)
83 3goz_A Leucine-rich repeat-con 99.1 8.1E-11 2.8E-15 110.2 5.2 196 148-343 47-297 (362)
84 1ziw_A TOLL-like receptor 3; i 99.1 6.9E-10 2.4E-14 112.6 12.5 148 195-343 327-517 (680)
85 2z7x_B TOLL-like receptor 1, v 99.1 7.6E-10 2.6E-14 108.6 12.3 172 170-343 274-457 (520)
86 4ezg_A Putative uncharacterize 99.1 4.4E-10 1.5E-14 95.8 9.2 78 126-207 44-122 (197)
87 4ezg_A Putative uncharacterize 99.1 7.9E-10 2.7E-14 94.1 10.8 148 170-343 42-194 (197)
88 1h6t_A Internalin B; cell adhe 99.1 7.2E-10 2.5E-14 100.5 11.0 142 149-298 44-188 (291)
89 2o6q_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 99.3 10.5 186 128-342 18-217 (270)
90 2o6q_A Variable lymphocyte rec 99.0 9.2E-10 3.2E-14 98.6 10.9 168 126-298 37-215 (270)
91 3j0a_A TOLL-like receptor 5; m 99.0 7E-10 2.4E-14 115.4 11.5 212 126-343 266-517 (844)
92 1jl5_A Outer protein YOPM; leu 99.0 3.4E-09 1.2E-13 102.2 14.6 75 126-208 131-206 (454)
93 1m9s_A Internalin B; cell inva 99.0 3.9E-10 1.3E-14 112.4 7.8 161 150-319 42-207 (605)
94 3goz_A Leucine-rich repeat-con 99.0 6.9E-10 2.4E-14 103.8 8.7 197 143-341 14-264 (362)
95 2z62_A TOLL-like receptor 4, v 98.9 2.4E-09 8.2E-14 96.1 8.4 200 126-335 28-246 (276)
96 1xeu_A Internalin C; cellular 98.9 2.6E-09 8.8E-14 95.4 8.0 144 147-299 37-183 (263)
97 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 9.1E-10 3.1E-14 72.3 2.4 40 6-45 5-44 (53)
98 3m19_A Variable lymphocyte rec 98.8 6.1E-09 2.1E-13 92.1 8.4 157 137-298 23-189 (251)
99 1p9a_G Platelet glycoprotein I 98.8 8.1E-09 2.8E-13 93.5 9.3 170 140-317 22-203 (290)
100 4ay9_X Follicle-stimulating ho 98.8 1.7E-08 5.8E-13 93.9 11.6 209 126-339 30-255 (350)
101 2ell_A Acidic leucine-rich nuc 98.8 2.4E-09 8.3E-14 88.5 4.3 127 151-299 24-158 (168)
102 3cvr_A Invasion plasmid antige 98.8 2.2E-08 7.4E-13 98.9 11.1 134 125-275 58-192 (571)
103 1xeu_A Internalin C; cellular 98.8 3.6E-09 1.2E-13 94.4 4.1 159 151-318 19-181 (263)
104 2je0_A Acidic leucine-rich nuc 98.7 2E-09 6.9E-14 87.1 1.5 34 151-184 17-54 (149)
105 3m19_A Variable lymphocyte rec 98.7 2.2E-08 7.6E-13 88.5 7.9 168 151-342 14-191 (251)
106 3cvr_A Invasion plasmid antige 98.7 4.6E-08 1.6E-12 96.6 10.4 173 151-342 59-242 (571)
107 4g8a_A TOLL-like receptor 4; l 98.7 3.2E-08 1.1E-12 99.0 7.9 201 170-371 369-585 (635)
108 4ay9_X Follicle-stimulating ho 98.7 1.5E-07 5.2E-12 87.4 11.9 199 138-341 19-234 (350)
109 2o6s_A Variable lymphocyte rec 98.6 2.1E-08 7.2E-13 85.9 4.7 66 140-208 19-87 (208)
110 2o6s_A Variable lymphocyte rec 98.6 6.7E-08 2.3E-12 82.7 7.6 53 260-317 121-173 (208)
111 2ra8_A Uncharacterized protein 98.6 4.7E-07 1.6E-11 84.3 13.1 201 78-299 92-318 (362)
112 2ell_A Acidic leucine-rich nuc 98.6 1.2E-07 4.1E-12 78.2 7.8 102 239-342 48-159 (168)
113 2ra8_A Uncharacterized protein 98.6 1.3E-07 4.4E-12 88.1 8.3 131 188-320 163-318 (362)
114 2je0_A Acidic leucine-rich nuc 98.5 1.7E-07 5.7E-12 75.6 6.3 37 262-298 87-123 (149)
115 1a9n_A U2A', U2A'; complex (nu 98.5 1.3E-07 4.5E-12 78.7 5.5 130 148-299 16-151 (176)
116 3e4g_A ATP synthase subunit S, 98.5 1.3E-07 4.5E-12 78.0 5.3 93 142-234 52-154 (176)
117 2xot_A Amphoterin-induced prot 98.5 3.2E-07 1.1E-11 85.6 8.5 154 140-298 30-199 (361)
118 3e6j_A Variable lymphocyte rec 98.4 4.3E-07 1.5E-11 79.0 8.3 136 138-298 29-169 (229)
119 2v70_A SLIT-2, SLIT homolog 2 98.4 2.2E-07 7.4E-12 80.4 6.0 90 138-230 21-116 (220)
120 2v9t_B SLIT homolog 2 protein 98.4 5.3E-07 1.8E-11 77.9 8.3 91 137-230 20-115 (220)
121 3e6j_A Variable lymphocyte rec 98.4 4.6E-07 1.6E-11 78.8 7.0 139 153-318 21-168 (229)
122 1a9n_A U2A', U2A'; complex (nu 98.4 2.5E-07 8.6E-12 76.9 4.4 128 126-277 19-154 (176)
123 3un9_A NLR family member X1; l 98.4 1E-07 3.6E-12 89.2 2.2 40 260-299 208-250 (372)
124 3e4g_A ATP synthase subunit S, 98.3 8.7E-07 3E-11 73.1 6.9 85 240-324 61-154 (176)
125 2v70_A SLIT-2, SLIT homolog 2 98.3 1.2E-06 4E-11 75.7 8.1 126 172-298 32-163 (220)
126 1ds9_A Outer arm dynein; leuci 98.3 4.9E-08 1.7E-12 83.0 -0.8 106 170-299 46-151 (198)
127 1ds9_A Outer arm dynein; leuci 98.3 3.5E-08 1.2E-12 83.9 -1.9 133 140-295 37-181 (198)
128 4g8a_A TOLL-like receptor 4; l 98.3 7.3E-07 2.5E-11 89.1 6.4 210 126-342 349-579 (635)
129 2v9t_B SLIT homolog 2 protein 98.3 9.1E-07 3.1E-11 76.4 6.1 141 154-298 14-162 (220)
130 3un9_A NLR family member X1; l 98.2 7.9E-07 2.7E-11 83.2 4.3 129 171-299 71-222 (372)
131 2xot_A Amphoterin-induced prot 98.0 5.2E-06 1.8E-10 77.3 6.4 142 154-299 21-174 (361)
132 2e31_A FBS1, F-box only protei 98.0 1.5E-06 5.2E-11 77.5 2.1 38 8-45 49-87 (297)
133 1dce_A Protein (RAB geranylger 98.0 7.2E-06 2.5E-10 81.0 5.9 55 172-229 441-496 (567)
134 4b8c_D Glucose-repressible alc 97.9 1.4E-06 4.7E-11 88.9 -0.2 106 170-277 222-330 (727)
135 3l2o_B F-box only protein 4; s 97.9 1.5E-06 5.2E-11 76.7 -0.4 34 9-42 4-37 (312)
136 3sb4_A Hypothetical leucine ri 97.9 2.4E-05 8.2E-10 71.7 7.4 76 262-342 225-309 (329)
137 4fdw_A Leucine rich hypothetic 97.9 0.00014 4.9E-09 68.5 12.6 203 127-342 136-357 (401)
138 1dce_A Protein (RAB geranylger 97.8 1.7E-05 5.9E-10 78.4 6.2 186 148-337 346-567 (567)
139 1w8a_A SLIT protein; signaling 97.8 2.1E-05 7E-10 66.2 5.7 68 138-208 18-89 (192)
140 2o6r_A Variable lymphocyte rec 97.8 3.4E-05 1.2E-09 63.8 6.3 56 151-207 28-86 (177)
141 3v7d_B Cell division control p 97.7 4.3E-06 1.5E-10 80.0 0.2 42 4-45 9-50 (464)
142 1w8a_A SLIT protein; signaling 97.7 5.3E-05 1.8E-09 63.6 7.0 121 154-276 11-139 (192)
143 2wfh_A SLIT homolog 2 protein 97.7 4.8E-05 1.6E-09 64.1 6.6 34 151-184 31-66 (193)
144 2wfh_A SLIT homolog 2 protein 97.7 8.9E-05 3E-09 62.4 8.0 100 240-342 31-138 (193)
145 4b8c_D Glucose-repressible alc 97.7 1.4E-05 4.8E-10 81.4 3.1 107 191-299 218-327 (727)
146 1p22_A F-BOX/WD-repeat protein 97.6 9.5E-06 3.3E-10 77.2 0.1 42 2-43 3-48 (435)
147 2ovr_B FBW7, F-BOX/WD repeat p 97.6 1.8E-05 6E-10 75.4 1.7 41 3-43 12-52 (445)
148 2o6r_A Variable lymphocyte rec 97.6 0.00012 4.2E-09 60.4 6.5 123 153-277 9-138 (177)
149 3sb4_A Hypothetical leucine ri 97.5 0.00016 5.4E-09 66.2 7.2 95 218-315 225-327 (329)
150 1io0_A Tropomodulin; LRR prote 97.5 0.00018 6.1E-09 60.0 6.2 41 259-299 117-162 (185)
151 3g39_A Variable lymphocyte rec 97.2 0.00045 1.5E-08 56.7 6.2 90 137-229 18-112 (170)
152 2r9u_A Variable lymphocyte rec 97.2 0.00053 1.8E-08 56.5 6.4 89 138-229 22-115 (174)
153 4fdw_A Leucine rich hypothetic 97.1 0.003 1E-07 59.4 11.4 197 126-340 157-380 (401)
154 3g39_A Variable lymphocyte rec 96.9 0.0012 4E-08 54.1 5.9 15 328-342 100-114 (170)
155 2r9u_A Variable lymphocyte rec 96.9 0.0016 5.5E-08 53.6 6.3 78 263-342 33-117 (174)
156 1io0_A Tropomodulin; LRR prote 96.8 0.0011 3.6E-08 55.3 4.3 85 260-344 62-165 (185)
157 4fs7_A Uncharacterized protein 96.0 0.035 1.2E-06 51.8 10.5 75 260-340 294-376 (394)
158 2ifg_A High affinity nerve gro 95.9 0.009 3.1E-07 54.7 5.7 89 139-230 20-114 (347)
159 2ifg_A High affinity nerve gro 95.3 0.022 7.6E-07 52.0 6.0 78 238-317 29-111 (347)
160 3rw6_A Nuclear RNA export fact 95.2 0.018 6.1E-07 50.7 4.7 32 264-295 221-258 (267)
161 3rw6_A Nuclear RNA export fact 94.7 0.014 4.9E-07 51.3 2.7 78 126-203 170-257 (267)
162 4fs7_A Uncharacterized protein 94.6 0.091 3.1E-06 48.9 8.2 92 238-335 295-393 (394)
163 4gt6_A Cell surface protein; l 91.1 0.25 8.4E-06 45.9 5.5 120 217-340 263-388 (394)
164 4gt6_A Cell surface protein; l 89.8 1.5 5E-05 40.5 9.6 121 193-317 261-386 (394)
165 1pgv_A TMD-1, tropomodulin TMD 87.0 1.2 4E-05 37.0 6.1 35 263-297 98-135 (197)
166 1pgv_A TMD-1, tropomodulin TMD 84.2 0.29 9.8E-06 40.7 1.0 94 114-207 27-136 (197)
167 4h09_A Hypothetical leucine ri 81.6 1.8 6.2E-05 39.6 5.5 99 238-338 238-341 (379)
168 4h09_A Hypothetical leucine ri 74.0 8.3 0.00028 35.0 7.6 11 195-205 156-166 (379)
169 3rfe_A Platelet glycoprotein I 69.3 6 0.00021 30.1 4.6 41 142-184 24-67 (130)
170 3rfe_A Platelet glycoprotein I 43.5 9.8 0.00034 28.8 1.7 34 241-274 32-66 (130)
171 2kwv_A RAD30 homolog B, DNA po 21.6 75 0.0026 19.1 2.5 19 7-25 18-36 (48)
172 2khf_A PLNJ; anti-microbial, b 20.6 20 0.00067 17.9 -0.1 11 39-49 2-12 (26)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.9e-24 Score=199.89 Aligned_cols=279 Identities=15% Similarity=0.162 Sum_probs=166.9
Q ss_pred CccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhcccceeeeccccccccccCCCCCcchhhhhhhhhHHHHHHH
Q 016710 6 HIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKE 85 (384)
Q Consensus 6 ~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (384)
+...|++||||++.+||+||+.+|+++++.|||+|+++... +.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~------------------------------------ 47 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES------------------------------------ 47 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST------------------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch------------------------------------
Confidence 34558899999999999999999999999999999987532 11
Q ss_pred HHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-
Q 016710 86 TLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE- 164 (384)
Q Consensus 86 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~- 164 (384)
.++.+.+... ... +..+.....++++.+++... .....+..+..+++|++|++++|.+.
T Consensus 48 ----------~~~~l~l~~~----~~~----~~~~~~~~~~~l~~L~l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 48 ----------LWQTLDLTGK----NLH----PDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp ----------TSSEEECTTC----BCC----HHHHHHHHHTTCSEEECTTC--EECSCCCSCCCCBCCCEEECTTCEECH
T ss_pred ----------hheeeccccc----cCC----HHHHHhhhhccceEEEcCCc--cccccchhhccCCCCCEEEccCCCcCH
Confidence 1122222100 001 12233334467777766321 12223333556788888888887654
Q ss_pred --CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--e--ecCCCCCCceEEecccccc-----
Q 016710 165 --SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--L--ELSGLTKLNKFEVCDAEEL----- 232 (384)
Q Consensus 165 --~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~--~i~~~~~L~~L~l~~~~~l----- 232 (384)
.+. ...+++|++|+++++.+++..... +..+++|+.|++.+|..+.. + .+..+++|+.|++++|..+
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 111 225788888888888776555544 45588888888888754432 1 1234678888888877322
Q ss_pred ceeeecCC-ceeEEEEeCcc--c--ccceeccccCccCcEEEeeccc-cchHHHHHHhccCCCcceEeeccccccccc--
Q 016710 233 QRLCIIAQ-DVQEVSIQGPL--P--FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSI-- 304 (384)
Q Consensus 233 ~~~~~~~p-~L~~L~l~~~~--~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~-- 304 (384)
......+| +|++|+++++. . ......+..+++|+.|+++++. +++..+ ..+..+++|++|++++|..+...
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 22233566 77777777763 1 1122234557788888887776 554433 34456778888888777544322
Q ss_pred --ccCCCcccEEeccccccceeecccCCCCceeEEeccccc
Q 016710 305 --NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 305 --~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~ 343 (384)
...+++|++|++.+|..-..+..-..+|+.|+++++.++
T Consensus 266 ~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSC
T ss_pred HHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCc
Confidence 234677888888777211112111233555556666654
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=5.3e-23 Score=205.90 Aligned_cols=284 Identities=13% Similarity=0.106 Sum_probs=131.7
Q ss_pred CCCCCCccccC----CCCHHHHHHHhcCC-Cccceeehhhhhhhhhhhhcccc-eeeecccccccc-------ccCCCCC
Q 016710 1 MESLSHIDRIS----NLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFS-VLKFDSDFFHQV-------FLEDSND 67 (384)
Q Consensus 1 ~~~~~~~d~is----~LPdeil~~I~s~L-~~~~~~~~~~vskrW~~lw~~~~-~l~~~~~~~~~~-------~~~~~~~ 67 (384)
||+ +++|+++ .||||++.+||+|| +.+|++++++|||||++++...+ .+.+... +... +|+ ...
T Consensus 1 m~~-~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~-L~~ 77 (592)
T 3ogk_B 1 MED-PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC-YTATPDRLSRRFPN-LRS 77 (592)
T ss_dssp ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG-GGSCHHHHHHHCTT-CSE
T ss_pred CCC-hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec-cccChHHHHHhCCC-CeE
Confidence 444 3567776 79999999999999 89999999999999998753222 1211110 0000 000 000
Q ss_pred cchhhhh----------hhhhH-HHHHHHHHhcccCCcccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeC
Q 016710 68 GSEAGKQ----------KLREI-FNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELL 136 (384)
Q Consensus 68 ~~~~~~~----------~~~~~-~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~ 136 (384)
....+.. ....+ ...+..+. .. - +.++.+.++... .. .....++......++++|++..+
T Consensus 78 L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~-~--~~L~~L~L~~~~----i~-~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEIS-NN-L--RQLKSVHFRRMI----VS-DLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp EEEECSCGGGGGTCSCTTSCCBCHHHHHHHH-HH-C--TTCCEEEEESCB----CC-HHHHHHHHHHHGGGCCEEEEESC
T ss_pred EEecCCcchhhcccccccccccchHHHHHHH-hh-C--CCCCeEEeeccE----ec-HHHHHHHHHhccccCcEEECcCC
Confidence 0000000 00000 00011111 01 1 356666665321 11 22233343333334777777643
Q ss_pred C-CCCcccCccccCCCCccEEEecCeeecCCC-------ccCCCCCCeEEeeeeecC---hHHHHHHHcCCCCccEEEee
Q 016710 137 G-NPRFNLPEIILCSNSIEILTLAGLKLESPR-------SVKLSSLTKLFLMRVDAT---DLVLQSLLIGCPLIEYLSLQ 205 (384)
Q Consensus 137 ~-~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~-------~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~L~ 205 (384)
. .....++.....|++|++|+|++|.+.... ...+++|++|+++++.++ ...+..++..||+|+.|++.
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 3 112233333345777888888777654211 125777888887777663 45667777778888888887
Q ss_pred eCCCCce-eecCCCCCCceEEecccccc------ceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchH
Q 016710 206 LCPGLKN-LELSGLTKLNKFEVCDAEEL------QRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE 278 (384)
Q Consensus 206 ~c~~~~~-~~i~~~~~L~~L~l~~~~~l------~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 278 (384)
+|..... ..+..+++|+.|.+..+... ......+++|+++.+++......+..+..+++|++|+++++.+++.
T Consensus 229 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp SCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred CccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 7642210 01122345555555432100 0001123344444443322222222233445555555555554444
Q ss_pred HHHHHhccCCCcceEeec
Q 016710 279 WLCNQISKFPLLESLLIA 296 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~ 296 (384)
.+..++..+++|+.|+++
T Consensus 309 ~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHHhCcCCCEEecc
Confidence 444444555555555554
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=8.7e-24 Score=211.59 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=29.3
Q ss_pred ccccCCCCHHHHHHHhcCCC-ccceeehhhhhhhhhhh
Q 016710 7 IDRISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRA 43 (384)
Q Consensus 7 ~d~is~LPdeil~~I~s~L~-~~~~~~~~~vskrW~~l 43 (384)
.|+|++|||||+.+||+||+ .+|++++++|||||+++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 48899999999999999999 99999999999999987
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.64 E-value=2.7e-15 Score=138.96 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=152.1
Q ss_pred HHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCc
Q 016710 122 YALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 199 (384)
Q Consensus 122 ~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 199 (384)
.....+++.|++.... ...+|..+..+++|++|+|+++.+. .+.. ..+++|++|+|+++.+. .+...+..+++|
T Consensus 77 ~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L 152 (328)
T 4fcg_A 77 DATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL 152 (328)
T ss_dssp HHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred cccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence 3344789999997644 4488988889999999999998776 4433 37999999999999874 223346789999
Q ss_pred cEEEeeeCCCCceeec-----------CCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCc
Q 016710 200 EYLSLQLCPGLKNLEL-----------SGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLK 266 (384)
Q Consensus 200 e~L~L~~c~~~~~~~i-----------~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~ 266 (384)
+.|++.+|.....+.. ..+++|+.|+++++. .++......++|+.|+++++.....+..+..+++|+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 9999999876543321 136788888888875 222222356788888888876554444567788888
Q ss_pred EEEeeccccchHHHHHHhccCCCcceEeecccccccccc---cCCCcccEEeccccccceeec---ccCCCCceeEEecc
Q 016710 267 YLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGD 340 (384)
Q Consensus 267 ~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~ 340 (384)
.|++++|.+... +...+..+++|+.|++++|.....+. ..+++|++|+|++|.....++ ..+++|+.+.+..+
T Consensus 233 ~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 233 ELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888887765432 23345677888888888876554433 345788888888877666555 45777777777655
Q ss_pred c
Q 016710 341 V 341 (384)
Q Consensus 341 ~ 341 (384)
.
T Consensus 312 ~ 312 (328)
T 4fcg_A 312 L 312 (328)
T ss_dssp G
T ss_pred H
Confidence 3
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=2.5e-15 Score=139.34 Aligned_cols=220 Identities=13% Similarity=0.079 Sum_probs=163.5
Q ss_pred HHHHHHHHhC-CCcEEEEEeCCCCCcccCccccCC--CCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHH
Q 016710 117 DQCIFYALGC-NVKELSLELLGNPRFNLPEIILCS--NSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQS 191 (384)
Q Consensus 117 ~~~l~~~~~~-~l~~L~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~ 191 (384)
..|-..+..+ ..+.+++...... +..+... ++++.|++.++.+. .+....+++|++|+++++.+++..+..
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 3565544333 4677776432211 2333344 88999999998776 334447999999999999988877888
Q ss_pred HHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEeccccccc-----eeeecCCceeEEEEeCc-cccc--ceecccc
Q 016710 192 LLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQ-----RLCIIAQDVQEVSIQGP-LPFQ--CKFNLAS 261 (384)
Q Consensus 192 l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l~-----~~~~~~p~L~~L~l~~~-~~~~--~~~~~~~ 261 (384)
.+..||+|++|++.+|..... ..+..+++|+.|++++|..+. .....+|+|++|+++++ .... ....+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 899999999999999853321 134568999999999995333 33346899999999988 4322 2334667
Q ss_pred Cc-cCcEEEeecc--ccchHHHHHHhccCCCcceEeecccccccc----cccCCCcccEEecccccccee----ecccCC
Q 016710 262 CK-FLKYLRFALT--HIKDEWLCNQISKFPLLESLLIAGCDDLKS----INISSRSLKLLEIYDCLRLVE----VKIAAS 330 (384)
Q Consensus 262 ~~-~L~~L~L~~~--~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~c~~l~~----~~~~~~ 330 (384)
++ +|++|+++++ .+++..+...+..+++|+.|++++|..++. ....+++|++|++.+|..+.. ....++
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 89 9999999998 677777888888999999999999985432 223459999999999875542 246799
Q ss_pred CCceeEEecc
Q 016710 331 SLSIFKYSGD 340 (384)
Q Consensus 331 ~L~~L~l~~~ 340 (384)
+|++|+++++
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 9999999998
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=6.9e-14 Score=129.43 Aligned_cols=190 Identities=21% Similarity=0.231 Sum_probs=145.8
Q ss_pred CCCccEEEecCeeec-CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-ecCCCCCCceEEe
Q 016710 150 SNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-ELSGLTKLNKFEV 226 (384)
Q Consensus 150 ~~~L~~L~L~~~~l~-~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-~i~~~~~L~~L~l 226 (384)
.++++.|+++++.+. .+. ...+++|++|+|+++.+. .+...+..+++|+.|++.+|...... .+..+++|+.|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 478999999998776 343 336999999999999874 22233567999999999998644211 3456789999999
Q ss_pred ccccccceee------------ecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEe
Q 016710 227 CDAEELQRLC------------IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL 294 (384)
Q Consensus 227 ~~~~~l~~~~------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~ 294 (384)
++|.....+. ...++|+.|+++++.....+..+..+++|++|+++++.++. +...+..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEE
Confidence 9986333322 13889999999998755555567889999999999998764 333477899999999
Q ss_pred ecccccccccc---cCCCcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710 295 IAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 295 l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~ 343 (384)
+++|.....+. ..+++|++|++++|.....++ ..+++|++|++++|+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 99987655443 346899999999987666554 57999999999998763
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.46 E-value=3.8e-13 Score=125.16 Aligned_cols=207 Identities=17% Similarity=0.113 Sum_probs=128.9
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 202 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 202 (384)
.+++++|++..+. ...++. +..+++|++|++++|... .+....+++|+.|+++++.+..... +..+++|+.|
T Consensus 109 l~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L 182 (347)
T 4fmz_A 109 LTNLRELYLNEDN--ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSL 182 (347)
T ss_dssp CTTCSEEECTTSC--CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEE
T ss_pred CCcCCEEECcCCc--ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEE
Confidence 3688888885433 334444 567888999999887432 2233468888888888887722111 5678888888
Q ss_pred EeeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHH
Q 016710 203 SLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWL 280 (384)
Q Consensus 203 ~L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 280 (384)
++.+|.......+..+++|+.|.+.++. .... ...+++|++|+++++....... +..+++|+.|+++++.++.-
T Consensus 183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--
T ss_pred EccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--
Confidence 8888754432234556778888877765 1111 2356777777777765333222 56677777777777765542
Q ss_pred HHHhccCCCcceEeeccccccccc--ccCCCcccEEeccccccce---eecccCCCCceeEEeccccc
Q 016710 281 CNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 281 ~~l~~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~ 343 (384)
..+..+++|+.|++++|. +..+ ...+++|++|++++|.--. .....+++|++|++++|+++
T Consensus 259 -~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp -GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred -hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 345667777777777764 2221 2345677777777663221 22245777777777777654
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.46 E-value=6.9e-13 Score=123.44 Aligned_cols=188 Identities=14% Similarity=0.092 Sum_probs=101.5
Q ss_pred ccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceE
Q 016710 147 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKF 224 (384)
Q Consensus 147 l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L 224 (384)
+..+++|++|+++++.+. .+....+++|++|+++++.. .... .+..++.|+.|++.+|.......+..+++|+.|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 182 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence 344555555555554443 11222455555555555532 1100 034455555555555543322223445566666
Q ss_pred Eecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc
Q 016710 225 EVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK 302 (384)
Q Consensus 225 ~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~ 302 (384)
++++|. .+.. ....++|+.+.+.++....... +..+++|+.|+++++.++.... +..+++|+.|+++++....
T Consensus 183 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 183 SLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp ECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC
T ss_pred EccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC
Confidence 666654 1111 1245566666666554222211 5567788888887777654321 5677888888887764221
Q ss_pred -ccccCCCcccEEecccccccee--ecccCCCCceeEEeccccc
Q 016710 303 -SINISSRSLKLLEIYDCLRLVE--VKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 303 -~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~L~~L~l~~~~~~ 343 (384)
.....+++|++|+++++ .+.. ....+++|++|++++|.+.
T Consensus 258 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred ChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCC
Confidence 11234578888888866 3332 2356888888888888764
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=3.1e-13 Score=134.91 Aligned_cols=200 Identities=18% Similarity=0.148 Sum_probs=125.4
Q ss_pred cCccccCCCCccEEEecCeeecCC---C-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeee----------CC
Q 016710 143 LPEIILCSNSIEILTLAGLKLESP---R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQL----------CP 208 (384)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~l~~~---~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~----------c~ 208 (384)
+|..+..+++|++|++++|.+... . ...+++|++|++. ..+.+..+..+...|++|++|++.+ |.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 444444567777777777664311 1 1357777777777 3345566666667777788888874 54
Q ss_pred CCceee----cCCCCCCceEEeccccccc-----eeeecCCceeEEEEeCc----cccc------ceeccccCccCcEEE
Q 016710 209 GLKNLE----LSGLTKLNKFEVCDAEELQ-----RLCIIAQDVQEVSIQGP----LPFQ------CKFNLASCKFLKYLR 269 (384)
Q Consensus 209 ~~~~~~----i~~~~~L~~L~l~~~~~l~-----~~~~~~p~L~~L~l~~~----~~~~------~~~~~~~~~~L~~L~ 269 (384)
.+.... ...+++|+.|.+. |..+. .+...+|+|+.|++.++ .... ....+..+++|+.|+
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 443211 1236788888873 33222 22224778888888632 1111 111245588888888
Q ss_pred eeccc--cchHHHHHHhccCCCcceEeecccccc----cccccCCCcccEEeccccccce-----eecccCCCCceeEEe
Q 016710 270 FALTH--IKDEWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLRLV-----EVKIAASSLSIFKYS 338 (384)
Q Consensus 270 L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~L~~L~l~ 338 (384)
++.+. +++..+..+...+++|+.|++++|..- ..+...+++|++|+|++|. +. .+...+++|++|+++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc
Confidence 86543 677777777777888999988887521 2234567889999998886 33 233568899999999
Q ss_pred ccccccc
Q 016710 339 GDVISFQ 345 (384)
Q Consensus 339 ~~~~~~~ 345 (384)
+|.++.+
T Consensus 522 ~n~it~~ 528 (592)
T 3ogk_B 522 GYRASMT 528 (592)
T ss_dssp SCBCCTT
T ss_pred CCcCCHH
Confidence 8887544
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=9e-13 Score=132.01 Aligned_cols=214 Identities=15% Similarity=0.096 Sum_probs=112.1
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEE
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 202 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 202 (384)
+++++|++..+ ....+|..+..+++|++|+++++.+. .+ ....+++|++|+++++.+........+..+++|+.|
T Consensus 278 ~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 46666666432 23466666666777777777776554 12 222567777777776654211111224456777777
Q ss_pred EeeeCCCCcee----ecCCCCCCceEEeccccccc---eeeecCCceeEEEEeCcccccc--eeccccCccCcEEEeecc
Q 016710 203 SLQLCPGLKNL----ELSGLTKLNKFEVCDAEELQ---RLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALT 273 (384)
Q Consensus 203 ~L~~c~~~~~~----~i~~~~~L~~L~l~~~~~l~---~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~ 273 (384)
++.++...... .+..+++|+.|+++++.-.. .....+++|++|+++++..... ...+..+++|+.|+++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 77766543222 23456677777777664111 1111356677777666542211 112445666666666666
Q ss_pred ccchHHHHHHhccCCCcceEeeccccccc------ccccCCCcccEEecccccccee---ecccCCCCceeEEecccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCDDLK------SINISSRSLKLLEIYDCLRLVE---VKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~~~~ 342 (384)
.++.. ....+..+++|+.|+++++.... .....+++|++|+++++.-... ....+++|++|++++|.+
T Consensus 436 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 436 LLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CCBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 54432 12334556666666666654221 1122345666666665522111 123456666666666654
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=2.3e-12 Score=118.09 Aligned_cols=187 Identities=18% Similarity=0.101 Sum_probs=98.8
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
+++++|++..+. ...++ .+..+++|++|++++|.+. .+....+++|++|+++++.+..-. -+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEEC
Confidence 577777764332 33344 3556777777777777655 222335777777777777762211 2556777777777
Q ss_pred eeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHh
Q 016710 205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI 284 (384)
Q Consensus 205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 284 (384)
.+|.......+..+++|+.|+++++. ..... .+..+++|+.|+++++.+++-. . +
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~---------------------l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~-l 169 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQ---------------------ITNIS-PLAGLTNLQYLSIGNAQVSDLT--P-L 169 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSC---------------------CCCCG-GGGGCTTCCEEECCSSCCCCCG--G-G
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCc---------------------cCcCc-cccCCCCccEEEccCCcCCCCh--h-h
Confidence 76643322234455566666666553 11111 1344555666666555544311 1 4
Q ss_pred ccCCCcceEeeccccccccc--ccCCCcccEEeccccccce-eecccCCCCceeEEecccccc
Q 016710 285 SKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV-EVKIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 285 ~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~~~~~~ 344 (384)
..+++|+.|+++++.. ..+ ...+++|++|+++++.--. .-...+++|+.|++++|+++.
T Consensus 170 ~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCcc-CcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 4556666666655431 111 1234566666665442111 112456666666666666543
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=3.8e-12 Score=118.80 Aligned_cols=170 Identities=18% Similarity=0.080 Sum_probs=121.9
Q ss_pred CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+++++|++... ....++. .+..+++|++|+++++.+. .+. ...+++|++|+++++.+..-. ...+..+++|+.
T Consensus 52 ~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence 57888887543 3445555 5667999999999998766 233 336899999999999884321 233677999999
Q ss_pred EEeeeCCCCcee---ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeecc
Q 016710 202 LSLQLCPGLKNL---ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALT 273 (384)
Q Consensus 202 L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~ 273 (384)
|++.++...... .+..+++|+.|+++++..+..+. ...++|+.|+++++..... +..+..+++|++|++.++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 999988544221 34568899999999985333332 2568999999988764332 335677899999999998
Q ss_pred ccchHHHHHHhccCCCcceEeecccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~ 299 (384)
.+... ....+..+++|+.|+++++.
T Consensus 209 ~l~~~-~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 209 QHILL-LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred ccccc-hhhhhhhcccccEEECCCCc
Confidence 87532 23445568999999999875
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=2.7e-12 Score=123.94 Aligned_cols=211 Identities=14% Similarity=0.038 Sum_probs=149.8
Q ss_pred CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.+++.|+|.... ...+ +..+..+++|++|+|+++.+. .+.. ..+++|++|+|+++.+..-. ...+..+++|+.
T Consensus 75 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCE
T ss_pred CCccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCE
Confidence 578888886433 3334 445667899999999998765 2233 36899999999998873211 122567899999
Q ss_pred EEeeeCCCCcee--ecCCCCCCceEEeccccccceeee----cCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710 202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLCI----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
|+++++...... .+..+++|+.|++.+|..+..+.. ..++|++|+++++.....+ .+..+++|+.|+++++.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 999988644221 244678999999998875555542 5689999999887644332 467789999999999887
Q ss_pred chHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCCCceeEEecccc
Q 016710 276 KDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~ 342 (384)
+... ...+.++++|+.|+++++..-. .....+++|++|+|+++ .+..+ ...+++|++|++++|+.
T Consensus 231 ~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 231 PEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SEEC-GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccC-cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 6432 3456789999999999876321 12234689999999976 33333 35689999999999975
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.37 E-value=2.1e-12 Score=118.63 Aligned_cols=215 Identities=13% Similarity=0.108 Sum_probs=114.4
Q ss_pred CCCcEEEEEeCCCCC-cccCccccCCCCccEEEecC-eeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCcc
Q 016710 126 CNVKELSLELLGNPR-FNLPEIILCSNSIEILTLAG-LKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE 200 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~-~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 200 (384)
.++++|++....... ..+|..+..+++|++|++++ +.+. .+.. ..+++|++|+++++.+.... ...+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCCCCCC
Confidence 355666665433211 15666666677777777763 3332 2322 25677777777777652111 11245567777
Q ss_pred EEEeeeCCCCce--eecCCCCCCceEEecccccccee---eecCC-ceeEEEEeCcccc-cceeccccCccCcEEEeecc
Q 016710 201 YLSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQRL---CIIAQ-DVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALT 273 (384)
Q Consensus 201 ~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~~l~~~---~~~~p-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~ 273 (384)
.|++.++..... ..+..+++|+.|+++++.-...+ ....+ +|+.|+++++... ..+..+..+. |+.|+++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 777766542211 12334567777777766411111 11233 6777777665422 1222344444 777777776
Q ss_pred ccchHHHHHHhccCCCcceEeeccccccccc--ccCCCcccEEeccccccceee---cccCCCCceeEEeccccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~ 343 (384)
.++.. ....+..+++|+.|+++++...... ....++|++|+++++.-...+ ...+++|++|++++|.++
T Consensus 208 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred cccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 65432 2344566777777777775422111 223467777777765422122 245677777777777654
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.37 E-value=6.3e-13 Score=133.12 Aligned_cols=174 Identities=18% Similarity=0.106 Sum_probs=102.0
Q ss_pred CCCCCCeEEeeeeecChH-HHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEecccc--ccc--eeeecCCcee
Q 016710 170 KLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQ--RLCIIAQDVQ 243 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~--~l~--~~~~~~p~L~ 243 (384)
.+++|+.|+++++.+... .....+..++.|+.|++.+|..... ..+..+++|+.|++.++. ... ......++|+
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 455555555555544111 0112244566666666666542211 123345677777777664 111 1112456777
Q ss_pred EEEEeCccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEecccc
Q 016710 244 EVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDC 319 (384)
Q Consensus 244 ~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c 319 (384)
.|+++++.... .+..+..+++|+.|++.++.+++..+...+..+++|+.|+++++..... ....+++|++|+++++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 77777665322 2223566788888888888766533344567788888888888753322 1234588999999876
Q ss_pred ccce---eecccCCCCceeEEeccccc
Q 016710 320 LRLV---EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 320 ~~l~---~~~~~~~~L~~L~l~~~~~~ 343 (384)
.-.. .....+++|++|++++|.++
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 4222 22356888999999999875
No 16
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=1.4e-12 Score=130.17 Aligned_cols=107 Identities=19% Similarity=0.126 Sum_probs=70.6
Q ss_pred ccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCC-CCCcccCccccCCCCccEEEecCeeecCCC------
Q 016710 95 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGLKLESPR------ 167 (384)
Q Consensus 95 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~------ 167 (384)
..++.+.++... ........ +.. ..+++++|++..+. .....++.....|++|++|++++|.+....
T Consensus 105 ~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 478888887432 11111111 111 24799999997652 222335555557999999999988754211
Q ss_pred -ccCCCCCCeEEeeeee--cChHHHHHHHcCCCCccEEEeeeC
Q 016710 168 -SVKLSSLTKLFLMRVD--ATDLVLQSLLIGCPLIEYLSLQLC 207 (384)
Q Consensus 168 -~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~L~~c 207 (384)
...+++|++|+++++. ++...+..+...||+|+.|++.+|
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 1157899999999886 477788888888899999998877
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=3.4e-12 Score=122.89 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=140.9
Q ss_pred CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.+++.|+|.... ...++ ..+..+++|++|+|+++.+. .+.. ..+++|++|+|+++.+..-. ...+..+++|+.
T Consensus 64 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence 567777775432 33333 45567888999999887665 2222 26888999999888773211 122567888999
Q ss_pred EEeeeCCCCcee--ecCCCCCCceEEeccccccceeee----cCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710 202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLCI----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
|++.++...... .+..+++|+.|++.++..+..+.. ..++|++|+++++.....+ .+..+++|+.|+|++|.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 998887543221 244678899999888765444432 4678888988887644333 366788999999988876
Q ss_pred chHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCCCceeEEecccc
Q 016710 276 KDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~ 342 (384)
+... ...+.++++|+.|+++++..-. .....+++|++|+|+++ .+..+ ...+++|++|++++|+.
T Consensus 220 ~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEC-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccC-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 6421 3456778899999998875221 12234588999999865 23322 35688999999998875
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.36 E-value=1.1e-11 Score=120.23 Aligned_cols=102 Identities=11% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc-ccccCCCcccEEecc
Q 016710 239 AQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINISSRSLKLLEIY 317 (384)
Q Consensus 239 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~ 317 (384)
+++|+.|+++++...... .+..+++|+.|+++++.+++... +..+++|+.|++++|.... .....+++|+.|++.
T Consensus 286 l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 286 LTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAG 361 (466)
T ss_dssp CTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCccCeEEcCCCcccCch-hhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeCC
Confidence 345555555444322211 14455666666666655443221 3456666666666654111 112234677777777
Q ss_pred ccccceee-cccCCCCceeEEecccccc
Q 016710 318 DCLRLVEV-KIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 318 ~c~~l~~~-~~~~~~L~~L~l~~~~~~~ 344 (384)
++.-.... ...+++|+.|++++|.++.
T Consensus 362 ~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCccCccchhhcCCCCCEEeccCCcccC
Confidence 65322211 3567888888888876644
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.36 E-value=7e-12 Score=121.56 Aligned_cols=206 Identities=18% Similarity=0.111 Sum_probs=150.7
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
.+.++++++.... ..++ .+..+++|++|+++++.+. .+....+++|++|+++++.+..... +..+++|+.|+
T Consensus 155 l~~L~~L~l~~~~---~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ 227 (466)
T 1o6v_A 155 LTSLQQLSFGNQV---TDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELS 227 (466)
T ss_dssp CTTCSEEEEEESC---CCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEE
T ss_pred CCcccEeecCCcc---cCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEE
Confidence 3689999986422 2222 2667999999999998776 3334479999999999998832211 56799999999
Q ss_pred eeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710 204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 281 (384)
Q Consensus 204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 281 (384)
+.+|.......+..+++|+.|+++++. .... ...+++|+.|+++++....... +..+++|+.|++.++.+.+..
T Consensus 228 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-- 303 (466)
T 1o6v_A 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS-- 303 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--
T ss_pred CCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--
Confidence 999864433345567899999999986 2222 2367899999999876443332 678899999999998876532
Q ss_pred HHhccCCCcceEeeccccccccc-ccCCCcccEEeccccccceee--cccCCCCceeEEeccccc
Q 016710 282 NQISKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLVEV--KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~c~~l~~~--~~~~~~L~~L~l~~~~~~ 343 (384)
.+..+++|+.|+++++...... ...+++|++|++.++. +..+ ...+++|+.|++++|.++
T Consensus 304 -~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 304 -PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred -hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccC
Confidence 2678999999999998632211 2356899999999873 3322 367999999999999774
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=9.5e-13 Score=120.36 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=15.7
Q ss_pred cCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
.+++|++|++.++.++.......+..+++|+.|+++++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 34444444444444332112223334444444444444
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=8.4e-12 Score=120.65 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=112.9
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ 205 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~ 205 (384)
+++++|++..+. ...+| +..+++|++|+++++.+.......+++|++|+++++.+..-. +..+++|+.|++.
T Consensus 64 ~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 64 TGLTKLICTSNN--ITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCA 135 (457)
T ss_dssp TTCSEEECCSSC--CSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECT
T ss_pred CCCCEEEccCCc--CCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECC
Confidence 566666665432 22233 445666777777666555222335667777777776663211 4566677777776
Q ss_pred eCCCCceeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHh
Q 016710 206 LCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI 284 (384)
Q Consensus 206 ~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 284 (384)
++.-. .+.+..+++|+.|++.++..+..+.+ ..++|+.|+++++.....+ +..+++|+.|++.++.++.. -+
T Consensus 136 ~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l 208 (457)
T 3bz5_A 136 RNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DL 208 (457)
T ss_dssp TSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CC
T ss_pred CCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----cc
Confidence 65432 23455666777777777653333332 4567777777766543332 56677777777777766543 15
Q ss_pred ccCCCcceEeeccccccccc-ccCCCcccEEeccccccceeecccCCCCceeEEecc
Q 016710 285 SKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD 340 (384)
Q Consensus 285 ~~~p~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~ 340 (384)
..+++|+.|+++++. +..+ ...+++|++|+++++.--......+++|+.|+++++
T Consensus 209 ~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp TTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred ccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence 567778888877764 2222 224577888877754211111234555555544443
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.35 E-value=1.6e-12 Score=119.31 Aligned_cols=214 Identities=9% Similarity=0.022 Sum_probs=151.2
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.+.+++|++..+..-...+|..+..+++|++|+++++.+. .+.. ..+++|++|+++++.+... +...+..+++|+.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 3799999997322223467888888999999999998775 4443 3799999999999987321 1123567999999
Q ss_pred EEeeeCCCCcee--ecCCCC-CCceEEecccccccee--eecCCceeEEEEeCcccc-cceeccccCccCcEEEeecccc
Q 016710 202 LSLQLCPGLKNL--ELSGLT-KLNKFEVCDAEELQRL--CIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~-~L~~L~l~~~~~l~~~--~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
|++.++...... .+..++ +|+.|+++++.-...+ .+...+|+.|+++++... ..+..+..+++|+.|+++++.+
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 999998654222 234555 9999999988521111 122224999999887633 2334567899999999999887
Q ss_pred chHHHHHHhccCCCcceEeecccccc---cccccCCCcccEEeccccccceeec--ccCCCCceeEEeccc
Q 016710 276 KDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSGDV 341 (384)
Q Consensus 276 ~~~~~~~l~~~~p~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~ 341 (384)
+.. ...+..+++|+.|+++++... .......++|++|+++++.--..++ ..+++|+.|++.+|+
T Consensus 234 ~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred eee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 632 222577899999999998633 2223456899999999774332343 558889999999987
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.35 E-value=2.1e-12 Score=132.92 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=99.7
Q ss_pred CCCcEEEEEeCCCCCcccCc--cccCCCCccEEEecCeeec--CCCc--cCCCCCCeEEeeeeecChHHH--HHHHcCCC
Q 016710 126 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRS--VKLSSLTKLFLMRVDATDLVL--QSLLIGCP 197 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~--~~~~--~~~~~L~~L~L~~~~~~~~~l--~~l~~~~p 197 (384)
+++++|+++.+.. ...+|. .+..+++|++|++++|.+. .+.. ..+++|++|+++++.+..... ...+..++
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 5778887764322 223555 6777888888888887665 2222 368888888888888732222 22367788
Q ss_pred CccEEEeeeCCCCceeecCCCCCCceEEeccccc---cceeeecCCceeEEEEeCcccc-cceeccccCccCcEEEeecc
Q 016710 198 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALT 273 (384)
Q Consensus 198 ~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~ 273 (384)
+|+.|++.+|..........+++|+.|+++++.- ++. ....++|++|+++++... ..+..+..+++|++|++.++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 8888888877544333445667888888877751 112 225667777777766532 22233555666666666665
Q ss_pred ccchHHHHHHhccCCCcceEeeccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
.+.... .. ..+++|++|+++++
T Consensus 258 ~l~~~~-~~--~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 258 QFVGPI-PP--LPLKSLQYLSLAEN 279 (768)
T ss_dssp CCEESC-CC--CCCTTCCEEECCSS
T ss_pred cccCcc-Cc--cccCCCCEEECcCC
Confidence 543211 00 13445555555544
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=5.8e-12 Score=122.44 Aligned_cols=194 Identities=14% Similarity=0.113 Sum_probs=106.5
Q ss_pred ccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCC
Q 016710 147 ILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKL 221 (384)
Q Consensus 147 l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L 221 (384)
+..+++|++|+++++.+. .+ ....+++|+.|+++++.+.... ...+..+++|+.|++.++..... ..+..+++|
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 344555556655554433 11 1224566666666666552211 12245566666666666543321 123345677
Q ss_pred ceEEeccccccceee---ecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecc
Q 016710 222 NKFEVCDAEELQRLC---IIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG 297 (384)
Q Consensus 222 ~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~ 297 (384)
+.|+++++..+..+. ...++|++|+++++.....+ ..+..+++|+.|+++++.++... ...+..+++|+.|++++
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVG 281 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCS
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccCCEEECCC
Confidence 777777665333322 22346777777766533322 23556777888887777655321 23345677788888877
Q ss_pred ccccc---ccccCCCcccEEeccccc--cce-eecccCCCCceeEEecccc
Q 016710 298 CDDLK---SINISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 298 c~~l~---~~~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~ 342 (384)
+.... .....+++|++|+++++. .+. .....+++|++|++++|++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 64221 122345778888887652 121 2234577888888888765
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=6e-12 Score=113.81 Aligned_cols=199 Identities=16% Similarity=0.102 Sum_probs=131.9
Q ss_pred CcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee---
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--- 213 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--- 213 (384)
...+|..+ .++|++|+++++.+. .+. ...+++|++|+++++.+.... ...+..+++|+.|++.++..+..+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence 44455433 467888888887665 222 236888888888888763221 122556888888888887644333
Q ss_pred ecCCCCCCceEEecccc--cc-ceeeecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHHHHhccCCC
Q 016710 214 ELSGLTKLNKFEVCDAE--EL-QRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPL 289 (384)
Q Consensus 214 ~i~~~~~L~~L~l~~~~--~l-~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~ 289 (384)
.+..+++|+.|++.++. .+ .......++|++|+++++....... .+..+++|+.|+++++.++.-. ...+..+++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 178 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHS 178 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccc
Confidence 34457788888888875 11 1112246788999888876443332 2667899999999988765321 234567899
Q ss_pred cceEeecccccccc---cccCCCcccEEecccccccee----ecccCCCCceeEEeccccc
Q 016710 290 LESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVE----VKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 290 L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~~~~~ 343 (384)
|+.|+++++..... ....+++|++|++.++. +.. ....+++|++|++++|++.
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence 99999998763221 22345899999998763 222 2356899999999999764
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.33 E-value=2.8e-12 Score=123.76 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=50.2
Q ss_pred cccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCC
Q 016710 259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASS 331 (384)
Q Consensus 259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~ 331 (384)
+..+++|+.|++.++.++... ...+..+++|+.|+++++.... .....+++|++|+++++. +..+ ...+++
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence 455677777777777655321 2234567777777777764221 112345778888887653 2222 245778
Q ss_pred CceeEEeccccc
Q 016710 332 LSIFKYSGDVIS 343 (384)
Q Consensus 332 L~~L~l~~~~~~ 343 (384)
|++|++++|.+.
T Consensus 373 L~~L~L~~N~l~ 384 (455)
T 3v47_A 373 LKELALDTNQLK 384 (455)
T ss_dssp CCEEECCSSCCS
T ss_pred ccEEECCCCccc
Confidence 888888887664
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.33 E-value=3.6e-12 Score=126.51 Aligned_cols=211 Identities=19% Similarity=0.158 Sum_probs=130.2
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEee
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ 205 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~ 205 (384)
++++++++..+. ...+|..+..+ +|++|++++|.+..-....+++|+.|++.++....... ...+|+|+.|++.
T Consensus 282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~ 355 (570)
T 2z63_A 282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLS 355 (570)
T ss_dssp TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECC
T ss_pred CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc---cccCCCCCEEeCc
Confidence 677777776433 33567766667 88888888876652222467888888888776621110 1567888888888
Q ss_pred eCCCCcee----ecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccc--eeccccCccCcEEEeeccccch
Q 016710 206 LCPGLKNL----ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 206 ~c~~~~~~----~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~ 277 (384)
+|...... .+..+++|+.|+++++. .+......+++|++|++.++..... ...+..+++|++|+++++.+..
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 77543221 23356788888888775 2222233677888888877653221 1235667788888887776543
Q ss_pred HHHHHHhccCCCcceEeecccccc----cccccCCCcccEEecccccccee---ecccCCCCceeEEeccccc
Q 016710 278 EWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLRLVE---VKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 278 ~~~~~l~~~~p~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~~~~~ 343 (384)
. ....+..+++|+.|++++|... ......+++|++|+++++.--.. ....+++|++|++++|.++
T Consensus 436 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 436 A-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp C-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred c-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 2 2334566778888888877532 12233457788888876632221 1245778888888877653
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.33 E-value=1.2e-11 Score=117.12 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=113.7
Q ss_pred CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec-CCCc--cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~-~~~~--~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+++++|++..+. ...++ ..+..+++|++|+++++.+. .+.. ..+++|++|+++++.+.... ...+..+++|+.
T Consensus 93 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred CCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence 566666665332 22333 33455677777777776554 2222 24677777777776652211 112445667777
Q ss_pred EEeeeCCCCceeecCCCCCCce-------------------EEeccccccceee-ecCCceeEEEEeCcccccceecccc
Q 016710 202 LSLQLCPGLKNLELSGLTKLNK-------------------FEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLAS 261 (384)
Q Consensus 202 L~L~~c~~~~~~~i~~~~~L~~-------------------L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~ 261 (384)
|++.++... ...+..+++|+. |+++++. +..+. ...++|+.|+++++..... ..+..
T Consensus 170 L~l~~n~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~ 246 (390)
T 3o6n_A 170 LQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLN 246 (390)
T ss_dssp EECCSSCCS-BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGGGG
T ss_pred EECCCCcCC-ccccccccccceeecccccccccCCCCcceEEECCCCe-eeeccccccccccEEECCCCCCccc-HHHcC
Confidence 777665422 122233344444 4444442 11111 1234666666666543222 23556
Q ss_pred CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCceeE
Q 016710 262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLSIFK 336 (384)
Q Consensus 262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~ 336 (384)
+++|++|+++++.++.. ....+..+++|+.|+++++... ......+++|++|+++++ .+..++ ..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence 77788888777765542 1234566777888888776421 112234577888888765 233332 3467788888
Q ss_pred Eecccccc
Q 016710 337 YSGDVISF 344 (384)
Q Consensus 337 l~~~~~~~ 344 (384)
+++|.+..
T Consensus 325 L~~N~i~~ 332 (390)
T 3o6n_A 325 LDHNSIVT 332 (390)
T ss_dssp CCSSCCCC
T ss_pred CCCCccce
Confidence 87777643
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.33 E-value=1.4e-11 Score=119.15 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=157.3
Q ss_pred ccceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCCCccCCCCC
Q 016710 95 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSL 174 (384)
Q Consensus 95 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L 174 (384)
..++.+.+..... ..+ .....+++++|++..+. ...++ +..+++|++|+++++.+..-....+++|
T Consensus 64 ~~L~~L~Ls~n~l------~~~----~~~~l~~L~~L~Ls~N~--l~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L 129 (457)
T 3bz5_A 64 TGLTKLICTSNNI------TTL----DLSQNTNLTYLACDSNK--LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129 (457)
T ss_dssp TTCSEEECCSSCC------SCC----CCTTCTTCSEEECCSSC--CSCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTC
T ss_pred CCCCEEEccCCcC------CeE----ccccCCCCCEEECcCCC--Cceee--cCCCCcCCEEECCCCcCCeecCCCCCcC
Confidence 4777877764322 111 11223688999886544 23333 6678999999999987763234478999
Q ss_pred CeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccc
Q 016710 175 TKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPF 253 (384)
Q Consensus 175 ~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~ 253 (384)
++|+++++.+..-. +..+++|+.|++.+|.....+.+..+++|+.|+++++. +..+.+ ..++|+.|.++++...
T Consensus 130 ~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 130 TYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCC
Confidence 99999999884321 66899999999999977766677788999999999885 222223 5789999999887644
Q ss_pred cceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCccc----------EEeccccccce
Q 016710 254 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLK----------LLEIYDCLRLV 323 (384)
Q Consensus 254 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~----------~L~l~~c~~l~ 323 (384)
.. .+..+++|+.|+++++.++.- . +..+++|+.|+++++.--......+++|+ .|++.++....
T Consensus 205 ~~--~l~~l~~L~~L~Ls~N~l~~i---p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KL--DLNQNIQLTFLDCSSNKLTEI---D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CC--CCTTCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ee--ccccCCCCCEEECcCCccccc---C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 33 477889999999999987762 2 67889999999998752221122344444 55555555555
Q ss_pred eec-ccCCCCceeEEeccccc
Q 016710 324 EVK-IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 324 ~~~-~~~~~L~~L~l~~~~~~ 343 (384)
.++ ..+++|++|++++|...
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTTC
T ss_pred cccccccccCCEEECCCCccc
Confidence 444 46899999999998743
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=3.6e-12 Score=131.22 Aligned_cols=193 Identities=15% Similarity=0.046 Sum_probs=135.5
Q ss_pred CCCcEEEEEe-CCCCCcccCccccCCCCccEEEecCeeec--CCC---ccCCCCCCeEEeeeeecChHHHHHHHcCCCCc
Q 016710 126 CNVKELSLEL-LGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR---SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 199 (384)
Q Consensus 126 ~~l~~L~l~~-~~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 199 (384)
.+++.|++.. .......+|..+..+++|++|+|+++.+. .+. ...+++|++|+++++.+.......+...+++|
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 3445555433 23334567788889999999999998775 333 33799999999999987322222233678999
Q ss_pred cEEEeeeCCCCceee-----cCCCCCCceEEeccccccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeecc
Q 016710 200 EYLSLQLCPGLKNLE-----LSGLTKLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALT 273 (384)
Q Consensus 200 e~L~L~~c~~~~~~~-----i~~~~~L~~L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~ 273 (384)
+.|++++|....... +..+++|+.|+++++.-..... ..+++|++|+++++........+..+++|++|++.++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC
Confidence 999999986543221 5678999999999986222222 3678999999998874433333788999999999999
Q ss_pred ccchHHHHHHhccCCCcceEeecccccccccc-cCCCcccEEecccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCDDLKSIN-ISSRSLKLLEIYDC 319 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~c 319 (384)
.+++. +...+..+++|+.|++++|.....+. ..+++|++|++.++
T Consensus 234 ~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 234 KLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279 (768)
T ss_dssp CCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred cCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCC
Confidence 88754 45567889999999999986332111 14456666666654
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=127.26 Aligned_cols=212 Identities=17% Similarity=0.125 Sum_probs=153.9
Q ss_pred CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChH-HHHHHHcCCCCccEEEe
Q 016710 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~L 204 (384)
+++++++..+.. ..+|. ..+++|++|++.++.... .....+++|++|+++++.+... .....+..+++|+.|++
T Consensus 305 ~L~~L~l~~n~~--~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 305 GWQHLELVNCKF--GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CCSEEEEESCBC--SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred CccEEeeccCcc--cccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 789999876543 35555 468999999999987652 2225799999999999987322 11223567999999999
Q ss_pred eeCCCCcee-ecCCCCCCceEEeccccc--cc--eeeecCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchH
Q 016710 205 QLCPGLKNL-ELSGLTKLNKFEVCDAEE--LQ--RLCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE 278 (384)
Q Consensus 205 ~~c~~~~~~-~i~~~~~L~~L~l~~~~~--l~--~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~ 278 (384)
.+|...... .+..+++|+.|++.++.- .. .....+++|++|+++++.... .+..+..+++|+.|++.++.+++.
T Consensus 381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 998644221 256788999999999861 11 122367899999998876332 233467799999999999987644
Q ss_pred HHHHHhccCCCcceEeecccccccc---cccCCCcccEEecccccccee----ecccCCCCceeEEeccccc
Q 016710 279 WLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVE----VKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~----~~~~~~~L~~L~l~~~~~~ 343 (384)
.+...+..+++|+.|++++|..... ....+++|++|+++++. +.. ....+++|++|++++|++.
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 4445678899999999999863322 22356899999999763 332 2357899999999999865
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.31 E-value=4.3e-12 Score=127.05 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCCCceEEecccc--ccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchHHHHHHhccCCCcceE
Q 016710 218 LTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL 293 (384)
Q Consensus 218 ~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L 293 (384)
+++|+.|+++++. .+.......++|+.|++.++...... ..+..+++|+.|+++++.++.. ....+..+++|+.|
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTL 453 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEE
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCEE
Confidence 4455555555543 11111113455566655554422111 1344566777777766665432 12335567777777
Q ss_pred eeccccccc----ccccCCCcccEEecccccccee---ecccCCCCceeEEeccccc
Q 016710 294 LIAGCDDLK----SINISSRSLKLLEIYDCLRLVE---VKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 294 ~l~~c~~l~----~~~~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~~~~~ 343 (384)
+++++.... .....+++|++|+++++.-... ....+++|++|++++|.++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 777765222 1223457888888887632222 2256889999999988763
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=1.1e-12 Score=119.84 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=142.6
Q ss_pred CCCcEEEEEeCCCCCcccCccc-cCCCCccEEEecCeeecC-----CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCc
Q 016710 126 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLES-----PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 199 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~-----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L 199 (384)
+++++|++..+. ...+|... ..+++|++|+++++.+.. .....+++|++|+++++.+.. +...+..+++|
T Consensus 28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 467777775433 44666653 568889999998876541 122268889999998887621 11125568889
Q ss_pred cEEEeeeCCCCce---eecCCCCCCceEEecccccc---ceeeecCCceeEEEEeCccccc--ceeccccCccCcEEEee
Q 016710 200 EYLSLQLCPGLKN---LELSGLTKLNKFEVCDAEEL---QRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFA 271 (384)
Q Consensus 200 e~L~L~~c~~~~~---~~i~~~~~L~~L~l~~~~~l---~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~ 271 (384)
+.|++.++..... ..+..+++|+.|+++++.-. .......++|++|+++++.... .+..+..+++|++|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 9999887643221 12446789999999888511 1111246889999998876432 34456778999999999
Q ss_pred ccccchHHHHHHhccCCCcceEeeccccccc--c-cccCCCcccEEecccccccee---ecccC-CCCceeEEecccccc
Q 016710 272 LTHIKDEWLCNQISKFPLLESLLIAGCDDLK--S-INISSRSLKLLEIYDCLRLVE---VKIAA-SSLSIFKYSGDVISF 344 (384)
Q Consensus 272 ~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~--~-~~~~~~~L~~L~l~~c~~l~~---~~~~~-~~L~~L~l~~~~~~~ 344 (384)
++.++... ...+..+++|+.|+++++.... . ....+++|++|+++++.-... ....+ ++|++|++++|++..
T Consensus 184 ~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 184 QCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 98876431 3446778999999999976322 1 223468999999997642221 22345 489999999998643
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=6.6e-12 Score=125.60 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=48.0
Q ss_pred cccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCc
Q 016710 259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLS 333 (384)
Q Consensus 259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~ 333 (384)
+..+++|+.|+++++.++.. ....+..+++|+.|+++++... ......+++|++|+++++. +..++ ..+++|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 44566777777766665432 1233456677777777765411 1122235677777777653 22222 4477777
Q ss_pred eeEEecccccc
Q 016710 334 IFKYSGDVISF 344 (384)
Q Consensus 334 ~L~l~~~~~~~ 344 (384)
+|++++|.+..
T Consensus 328 ~L~L~~N~l~~ 338 (597)
T 3oja_B 328 NLYLDHNSIVT 338 (597)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCCCCC
Confidence 77777776643
No 35
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=5.8e-12 Score=115.84 Aligned_cols=205 Identities=20% Similarity=0.133 Sum_probs=135.6
Q ss_pred CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
+++++|++..+. ...++ ..+..+++|++|+++++.+. .+....+++|++|+++++.+.. +..++.|+.|+
T Consensus 34 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred CCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEE
Confidence 478888875432 33344 45667889999999887665 2224468899999999887632 22458899999
Q ss_pred eeeCCCCceeecCCCCCCceEEecccc--ccceee-ecCCceeEEEEeCccccccee-cc-ccCccCcEEEeeccccchH
Q 016710 204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCKF-NL-ASCKFLKYLRFALTHIKDE 278 (384)
Q Consensus 204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~~~-~~-~~~~~L~~L~L~~~~~~~~ 278 (384)
+.++... ......+++|+.|+++++. .+.... ...++|+.|+++++....... .+ ..+++|++|+++++.++..
T Consensus 106 l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 106 AANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 9887543 3344456789999998885 222222 246788888888876433221 22 3578889999888876543
Q ss_pred HHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710 279 WLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~ 343 (384)
.-...+++|+.|+++++..- ......+++|++|+++++ .+..++ ..+++|+.|++++|++.
T Consensus 185 ---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 ---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ---ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 11234788899998887522 112334578888888865 333333 45788888988888765
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=2.4e-11 Score=112.18 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=82.7
Q ss_pred CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
+++++|++..+. ...+ |..+..+++|++|+++++.+..-....+++|++|+++++.+.... ...+..+++|+.|++
T Consensus 76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence 455555554322 2222 344445566666666655444111112355666666655552211 122445566666666
Q ss_pred eeCCCCc----eeecCCCCCCceEEeccccccceeee-cCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchH
Q 016710 205 QLCPGLK----NLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDE 278 (384)
Q Consensus 205 ~~c~~~~----~~~i~~~~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~ 278 (384)
.++.... ...+..+++|+.|+++++. +..+.. ..++|++|+++++..... ...+..+++|+.|+++++.++..
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 5553321 1112334566666665553 111111 124555555555442221 12344455555565555554321
Q ss_pred HHHHHhccCCCcceEeeccccccccc---ccCCCcccEEeccc
Q 016710 279 WLCNQISKFPLLESLLIAGCDDLKSI---NISSRSLKLLEIYD 318 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~ 318 (384)
. ...+..+++|+.|+++++. +..+ ...+++|++|++.+
T Consensus 232 ~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 232 D-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp C-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCS
T ss_pred C-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCC
Confidence 1 1123445555555555543 1111 12335555555553
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.29 E-value=8.9e-12 Score=120.25 Aligned_cols=105 Identities=12% Similarity=-0.020 Sum_probs=75.0
Q ss_pred cCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc---cccCCCcccE
Q 016710 238 IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKL 313 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~ 313 (384)
..++|++|+++++..... +..+..+++|++|+++++.++.. ....+.++++|+.|+++++..... ....+++|++
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 356777777776653332 22467789999999999987543 234567899999999999863221 2235689999
Q ss_pred Eeccccccceee----cccCCCCceeEEecccccc
Q 016710 314 LEIYDCLRLVEV----KIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 314 L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~~~ 344 (384)
|+++++. +..+ ...+++|++|++++|++..
T Consensus 376 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 376 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCc-cccCCHhHhccCCcccEEEccCCCccc
Confidence 9999753 3322 3578999999999998754
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=118.30 Aligned_cols=213 Identities=15% Similarity=0.045 Sum_probs=119.0
Q ss_pred CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+++++|++..+ ....+|.. +..+++|++|+|+++.+. .+. ...+++|++|+++++.+..... ..+..+++|+.
T Consensus 80 ~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 156 (477)
T 2id5_A 80 FNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQ 156 (477)
T ss_dssp TTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCE
T ss_pred ccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCE
Confidence 45555555432 23334433 234566666666665443 121 2246666666666655421110 11345666666
Q ss_pred EEeeeCCCCcee--ecCCCCCCceEEecccc--ccce-eeecCCceeEEEEeCcccc-cceeccccCccCcEEEeecccc
Q 016710 202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~--~l~~-~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
|++.+|...... .+..+++|+.|++.++. .+.. ....+++|++|+++++... ..........+|+.|++.++.+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 666665322111 13445666777666654 1111 1124567777777765421 1122222345888888888876
Q ss_pred chHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccce---eecccCCCCceeEEeccccc
Q 016710 276 KDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~ 343 (384)
+.-. ...+..+++|+.|+++++. +..+ ...+++|++|.+.++.--. .....+++|++|++++|.++
T Consensus 237 ~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 237 TAVP-YLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CSCC-HHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cccC-HHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 6322 3456789999999999876 3222 2345899999999763222 22356899999999999764
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=9.9e-12 Score=125.21 Aligned_cols=173 Identities=9% Similarity=-0.021 Sum_probs=114.2
Q ss_pred hCCCcEEEEEeCCCCCc----------------ccCcccc--CCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeee
Q 016710 125 GCNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD 183 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~ 183 (384)
..++++|++........ .+|..+. .+++|++|++++|.+. .|... .+++|++|+++++.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 36899999986543220 1899988 9999999999998654 44333 79999999999998
Q ss_pred -cChHHHHHHH------cCCCCccEEEeeeCCCCcee---ecCCCCCCceEEecccccccee--eecCCceeEEEEeCcc
Q 016710 184 -ATDLVLQSLL------IGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAEELQRL--CIIAQDVQEVSIQGPL 251 (384)
Q Consensus 184 -~~~~~l~~l~------~~~p~Le~L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~--~~~~p~L~~L~l~~~~ 251 (384)
++...+..-+ ..+++|+.|++.+|...... .+..+++|+.|+++++.-...+ ....++|+.|+++++.
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 6552222222 34589999999998655222 2567789999999988521122 1245678888887766
Q ss_pred cccceeccccCcc-CcEEEeeccccchHHHHHHhcc--CCCcceEeecccc
Q 016710 252 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISK--FPLLESLLIAGCD 299 (384)
Q Consensus 252 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~--~p~L~~L~l~~c~ 299 (384)
....+..+..+++ |+.|+++++.++. +...+.. +++|+.|+++++.
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred cccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc
Confidence 4433444566677 7788777776551 2222222 2366677766654
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=2.1e-12 Score=122.13 Aligned_cols=199 Identities=16% Similarity=0.105 Sum_probs=106.5
Q ss_pred ccCCCCccEEEecCeeec-----CCCc--------cCCCCCCeEEeeeeecChH---HHHHHHcCCCCccEEEeeeCCCC
Q 016710 147 ILCSNSIEILTLAGLKLE-----SPRS--------VKLSSLTKLFLMRVDATDL---VLQSLLIGCPLIEYLSLQLCPGL 210 (384)
Q Consensus 147 l~~~~~L~~L~L~~~~l~-----~~~~--------~~~~~L~~L~L~~~~~~~~---~l~~l~~~~p~Le~L~L~~c~~~ 210 (384)
+..+++|++|+|++|.+. .|.. ..+++|++|+|+++.++.. .+...+..+++|+.|+|.+|...
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 445666666666665322 0111 2456666677666666332 23334456666777777666432
Q ss_pred ce--eec----CCC---------CCCceEEeccccc----cce---eeecCCceeEEEEeCccccc------ceeccccC
Q 016710 211 KN--LEL----SGL---------TKLNKFEVCDAEE----LQR---LCIIAQDVQEVSIQGPLPFQ------CKFNLASC 262 (384)
Q Consensus 211 ~~--~~i----~~~---------~~L~~L~l~~~~~----l~~---~~~~~p~L~~L~l~~~~~~~------~~~~~~~~ 262 (384)
.. ..+ ..+ ++|+.|.+++|.- +.. ....+++|++|+++++.... .+..+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 10 001 111 5677777766641 111 11145677777776665321 11134567
Q ss_pred ccCcEEEeeccccchH---HHHHHhccCCCcceEeecccccccc----cc-----cCCCcccEEeccccccce----eec
Q 016710 263 KFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIAGCDDLKS----IN-----ISSRSLKLLEIYDCLRLV----EVK 326 (384)
Q Consensus 263 ~~L~~L~L~~~~~~~~---~~~~l~~~~p~L~~L~l~~c~~l~~----~~-----~~~~~L~~L~l~~c~~l~----~~~ 326 (384)
++|+.|+|++|.+++. .+...+..+++|+.|++++|..-.. +. ..+++|++|+|+++.--. .++
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 7777777777776542 2334456677777777777652211 11 125777777777653111 122
Q ss_pred ----ccCCCCceeEEeccccccc
Q 016710 327 ----IAASSLSIFKYSGDVISFQ 345 (384)
Q Consensus 327 ----~~~~~L~~L~l~~~~~~~~ 345 (384)
.++++|++|++++|.++..
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHhcCCCceEEEccCCcCCcc
Confidence 3467777777777766433
No 41
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=1.2e-11 Score=120.68 Aligned_cols=205 Identities=20% Similarity=0.108 Sum_probs=138.5
Q ss_pred CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
+++++|+++.+. ...++ ..+..+++|++|+|++|.+. .+....+++|++|+|++|.++. +...|.|+.|+
T Consensus 34 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred CCccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEE
Confidence 378888886543 33343 46667899999999998765 2224478999999999988732 22458899999
Q ss_pred eeeCCCCceeecCCCCCCceEEecccc--ccceee-ecCCceeEEEEeCcccccc-eecc-ccCccCcEEEeeccccchH
Q 016710 204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQC-KFNL-ASCKFLKYLRFALTHIKDE 278 (384)
Q Consensus 204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~-~~~~-~~~~~L~~L~L~~~~~~~~ 278 (384)
+.+|.... .....+++|+.|+++++. .+.... ...++|+.|+++++..... +..+ ..+++|+.|+|++|.++..
T Consensus 106 L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 106 AANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99886443 333456889999999886 222222 2568899999988764332 2223 3578999999988887643
Q ss_pred HHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710 279 WLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 279 ~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~ 343 (384)
.-...+++|+.|+++++..- ......+++|+.|+++++. +..++ ..+++|+.|++++|++.
T Consensus 185 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 ---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ---cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 12235789999999887522 1122345789999998653 33333 45788999999888765
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.27 E-value=2.5e-11 Score=114.75 Aligned_cols=208 Identities=14% Similarity=0.025 Sum_probs=144.7
Q ss_pred CCCcEEEEEeCCCCCcccCccc-cCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+++++|++..+. ...+|..+ ..+++|++|+++++.+. .+. ...+++|++|+++++.+.... +..++.|+.
T Consensus 117 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~ 190 (390)
T 3o6n_A 117 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 190 (390)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce
Confidence 678888886543 45677765 56899999999998765 222 236899999999998874322 344666666
Q ss_pred EEeeeCCCC------------------ceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccc-eeccc
Q 016710 202 LSLQLCPGL------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC-KFNLA 260 (384)
Q Consensus 202 L~L~~c~~~------------------~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~ 260 (384)
|++.++... ........++|+.|++.++. .. ......|+|+.|+++++..... +..+.
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 666554221 11222334689999999986 22 1223678999999999874433 33567
Q ss_pred cCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc---cCCCcccEEeccccccceee-cccCCCCceeE
Q 016710 261 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEV-KIAASSLSIFK 336 (384)
Q Consensus 261 ~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~-~~~~~~L~~L~ 336 (384)
.+++|+.|++.++.++.- ......+|+|+.|+++++. +..+. ..+++|++|+++++. +..+ ...+++|++|+
T Consensus 270 ~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~ 345 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLT 345 (390)
T ss_dssp TCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEE
T ss_pred ccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEE
Confidence 899999999999987642 2234578999999999985 33322 245899999999864 3322 46799999999
Q ss_pred Eecccccc
Q 016710 337 YSGDVISF 344 (384)
Q Consensus 337 l~~~~~~~ 344 (384)
+++|++..
T Consensus 346 l~~N~~~~ 353 (390)
T 3o6n_A 346 LSHNDWDC 353 (390)
T ss_dssp CCSSCEEH
T ss_pred cCCCCccc
Confidence 99998743
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.26 E-value=2.7e-11 Score=121.27 Aligned_cols=212 Identities=19% Similarity=0.172 Sum_probs=149.9
Q ss_pred CcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec-CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 128 VKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 128 l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~-~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
++.+++ .......++.. +..+++|++|+++++.+. .|.. ..+++|++|+++++.+..... ..+..+|+|+.|++
T Consensus 256 L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 256 VESINL--QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEC--TTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEEC
T ss_pred eeEEEe--ecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEEC
Confidence 444444 33334445544 556899999999998776 4433 378999999999998743221 23567999999999
Q ss_pred eeCCCCcee---ecCCCCCCceEEecccccccee------eecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccc
Q 016710 205 QLCPGLKNL---ELSGLTKLNKFEVCDAEELQRL------CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTH 274 (384)
Q Consensus 205 ~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~------~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~ 274 (384)
.+|.....+ .+..+++|+.|+++++.- ... ...+++|++|+++++..... +..+..+++|+.|++.++.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 998654222 245688999999999862 222 23578999999988763332 2346778999999999988
Q ss_pred cchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccccce------eecccCCCCceeEEeccccc
Q 016710 275 IKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLV------EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 275 ~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~~~~~ 343 (384)
+........+..+++|+.|+++++.... .....+++|++|++.++.--. .....+++|++|++++|.+.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 6644333446789999999999986332 223356899999999775322 22467999999999999764
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=1.4e-11 Score=120.17 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=138.5
Q ss_pred CCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710 150 SNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226 (384)
Q Consensus 150 ~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l 226 (384)
+++|++|+|+++.+. . +.. ..+++|++|+|++|.+.... . +..+++|+.|++++|. +..+. ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC--CCCCcCEEEC
Confidence 558999999998776 2 223 37999999999999883211 1 6789999999999984 33222 2379999999
Q ss_pred ccccccceeeecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc
Q 016710 227 CDAEELQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN 305 (384)
Q Consensus 227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~ 305 (384)
+++.-........++|+.|+++++..... +..+..+++|+.|++++|.++......+...+++|+.|+++++. +..+.
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc
Confidence 99863222233568999999998874432 44567799999999999988765444555578999999999986 32222
Q ss_pred --cCCCcccEEeccccccceee---cccCCCCceeEEecccccc
Q 016710 306 --ISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 306 --~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~~ 344 (384)
..+++|++|+++++. +..+ ...+++|++|++++|.++.
T Consensus 186 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcc
Confidence 236899999999763 3323 3568999999999998763
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=4.2e-11 Score=110.57 Aligned_cols=209 Identities=15% Similarity=0.067 Sum_probs=144.9
Q ss_pred CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+.++.|++.... ...++. .+..+++|++|+++++.+. .+.. ..+++|++|+++++.+..-. ...++.|+.
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTCCE
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccccE
Confidence 577888775433 444554 5667899999999998766 2333 36899999999998773210 122478999
Q ss_pred EEeeeCCCCcee--ecCCCCCCceEEeccccc----cc-eeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccc
Q 016710 202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEE----LQ-RLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH 274 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~----l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 274 (384)
|++.++...... .+..+++|+.|+++++.- .. ......++|+.|+++++.....+..+ .++|+.|+++++.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCc
Confidence 999988544322 245678999999998852 11 11125789999999887644333222 3899999999988
Q ss_pred cchHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceeec---ccCCCCceeEEecccccc
Q 016710 275 IKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVISF 344 (384)
Q Consensus 275 ~~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~ 344 (384)
++... ...+..+++|+.|+++++..-.. ....+++|++|+++++. +..++ ..+++|++|++++|.++.
T Consensus 204 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 204 ITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc
Confidence 76432 34567899999999999763221 22356899999999763 33443 568999999999998743
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.25 E-value=1.7e-11 Score=118.42 Aligned_cols=200 Identities=17% Similarity=0.090 Sum_probs=141.6
Q ss_pred CCCCcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
......+|..+ .++++.|+|+++.+. .+. ...+++|+.|+|+++.+..... ..+..+++|+.|+|.++......
T Consensus 63 ~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 63 RRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccC
Confidence 33455667654 378999999998776 233 3379999999999998733211 23567999999999998643211
Q ss_pred --ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccc-ccce-eccccCccCcEEEeeccccchHHHHHHhc
Q 016710 214 --ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQIS 285 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 285 (384)
.+..+++|+.|+++++. +..+. ...++|+.|+++++.. .... ..+..+++|++|+++++.++.- .-+.
T Consensus 140 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~ 215 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLT 215 (452)
T ss_dssp TTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCT
T ss_pred hhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---cccc
Confidence 24467899999999985 22322 2578999999988542 2121 2367789999999999987642 2356
Q ss_pred cCCCcceEeeccccccc---ccccCCCcccEEeccccccce---eecccCCCCceeEEeccccc
Q 016710 286 KFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 286 ~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~ 343 (384)
.+++|+.|+++++.... .....+++|++|.+.++.--. .....+++|++|++++|.++
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 78999999999976322 223456899999999764222 22356899999999999874
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=118.07 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=141.5
Q ss_pred CCCCcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
......+|..+. ++++.|+|+++.+. .+ ....+++|++|+|+++.+..-.. ..+..+++|+.|+|.++......
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeC
Confidence 344566776553 78999999998776 22 33479999999999998733211 23567999999999998543221
Q ss_pred --ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccc-ccce-eccccCccCcEEEeeccccchHHHHHHhc
Q 016710 214 --ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQIS 285 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 285 (384)
.+..+++|+.|+++++. +..+. ...++|+.|+++++.. .... ..+..+++|++|+++++.++.- .-+.
T Consensus 129 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~ 204 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLT 204 (440)
T ss_dssp TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCT
T ss_pred HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cccC
Confidence 24567899999999985 22222 2578999999988542 1111 2367789999999999887642 2356
Q ss_pred cCCCcceEeeccccccc---ccccCCCcccEEeccccccceee----cccCCCCceeEEeccccc
Q 016710 286 KFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 286 ~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~~ 343 (384)
.+++|+.|+++++..-. .....+++|++|.+.++. +..+ ...+++|++|++++|.++
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCC
Confidence 78999999999985221 122356899999999763 3322 356899999999999874
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.24 E-value=1.5e-11 Score=113.00 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=138.1
Q ss_pred CCCCccEEEecCeeecC-C-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710 149 CSNSIEILTLAGLKLES-P-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 225 (384)
Q Consensus 149 ~~~~L~~L~L~~~~l~~-~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~ 225 (384)
.+++|++|+++++.+.. + .. ..+++|++|+++++.+.... . +..+++|+.|++++|. +..+. ..++|+.|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEE
Confidence 46799999999987762 2 22 37999999999999883211 1 6789999999999884 22222 347999999
Q ss_pred eccccccceeeecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc
Q 016710 226 VCDAEELQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI 304 (384)
Q Consensus 226 l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~ 304 (384)
++++.-........++|+.|+++++..... ...+..+++|+.|+++++.++......+...+++|+.|+++++. ++.+
T Consensus 106 l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp CCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 999862222233578999999998874433 33567789999999999987765444555678999999999986 3222
Q ss_pred c--cCCCcccEEeccccccceee---cccCCCCceeEEeccccc
Q 016710 305 N--ISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 305 ~--~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~ 343 (384)
. ...++|++|+++++. +..+ ...+++|++|++++|.+.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC
T ss_pred ccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc
Confidence 2 236899999999763 3323 356899999999999875
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.24 E-value=1.2e-11 Score=119.51 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=46.1
Q ss_pred hCCCcEEEEEeCCCCCc---ccCccccCCCCccEEEecCeeecC--CC--ccCCC----CCCeEEeeeeecChH---HHH
Q 016710 125 GCNVKELSLELLGNPRF---NLPEIILCSNSIEILTLAGLKLES--PR--SVKLS----SLTKLFLMRVDATDL---VLQ 190 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~l~~--~~--~~~~~----~L~~L~L~~~~~~~~---~l~ 190 (384)
.++++++++..+..... .++..+..+++|++|+++++.+.. .. ...++ +|++|++++|.+++. .+.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 36677777765443222 344555556677777776665431 00 01233 577777776666432 344
Q ss_pred HHHcCCCCccEEEeeeCC
Q 016710 191 SLLIGCPLIEYLSLQLCP 208 (384)
Q Consensus 191 ~l~~~~p~Le~L~L~~c~ 208 (384)
..+..+++|++|++++|.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHTTSCTTCCEEECCSSB
T ss_pred HHHccCCceeEEECCCCc
Confidence 445566667777766654
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=3.7e-11 Score=120.14 Aligned_cols=210 Identities=14% Similarity=-0.003 Sum_probs=142.6
Q ss_pred CCCcEEEEEeCCCCCcccCccc-cCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
++++.|++..+. ...+|..+ ..+++|++|++++|.+. .+. ...+++|++|+++++.+.... +..+|.|+.
T Consensus 123 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 688888886543 45677665 57899999999998766 232 236899999999999874322 445677777
Q ss_pred EEeeeCCCCc------------------eeecCCCCCCceEEeccccccc-eeeecCCceeEEEEeCcccccc-eecccc
Q 016710 202 LSLQLCPGLK------------------NLELSGLTKLNKFEVCDAEELQ-RLCIIAQDVQEVSIQGPLPFQC-KFNLAS 261 (384)
Q Consensus 202 L~L~~c~~~~------------------~~~i~~~~~L~~L~l~~~~~l~-~~~~~~p~L~~L~l~~~~~~~~-~~~~~~ 261 (384)
|++.++.... .+.....++|+.|+++++.-.. ......|+|+.|+++++..... +..+..
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 7776653221 1111123467777777765111 1123578899999988764433 335778
Q ss_pred CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccc--cccccCCCcccEEeccccccceeecccCCCCceeEEec
Q 016710 262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSG 339 (384)
Q Consensus 262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~ 339 (384)
+++|+.|+|+++.++. +......+|+|+.|+++++... ......+++|++|+++++.-...-...+++|++|++++
T Consensus 277 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 277 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp CSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCS
T ss_pred ccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeC
Confidence 9999999999988765 2233456899999999998632 11223458999999998753222346799999999999
Q ss_pred cccc
Q 016710 340 DVIS 343 (384)
Q Consensus 340 ~~~~ 343 (384)
|++.
T Consensus 355 N~~~ 358 (597)
T 3oja_B 355 NDWD 358 (597)
T ss_dssp SCEE
T ss_pred CCCC
Confidence 9874
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=2e-12 Score=118.67 Aligned_cols=194 Identities=18% Similarity=0.125 Sum_probs=117.9
Q ss_pred CCCCccEEEecCeeec--CCCc---cCCCCCCeEEeeeeecChH--HHHHHHc-CCCCccEEEeeeCCCCcee--ecCCC
Q 016710 149 CSNSIEILTLAGLKLE--SPRS---VKLSSLTKLFLMRVDATDL--VLQSLLI-GCPLIEYLSLQLCPGLKNL--ELSGL 218 (384)
Q Consensus 149 ~~~~L~~L~L~~~~l~--~~~~---~~~~~L~~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~L~~c~~~~~~--~i~~~ 218 (384)
.+++|++|+++++.+. .+.. ..+++|++|+++++.+... .+..+.. ..++|+.|+++++...... .+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5788999999888765 2332 4688999999999888332 2222211 1388999999887543221 34467
Q ss_pred CCCceEEeccccccc------eee-ecCCceeEEEEeCcccccc---e-eccccCccCcEEEeeccccchHHHHHHhccC
Q 016710 219 TKLNKFEVCDAEELQ------RLC-IIAQDVQEVSIQGPLPFQC---K-FNLASCKFLKYLRFALTHIKDEWLCNQISKF 287 (384)
Q Consensus 219 ~~L~~L~l~~~~~l~------~~~-~~~p~L~~L~l~~~~~~~~---~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 287 (384)
++|+.|+++++.-.. .+. ...++|++|+++++..... . ..+..+++|+.|+++++.++.......+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 788888888875211 111 2456777777777653311 1 1123457788888877776543211233446
Q ss_pred CCcceEeecccccccccccCC-CcccEEeccccc--cceeecccCCCCceeEEecccccc
Q 016710 288 PLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 288 p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~ 344 (384)
++|+.|+++++. ++.+.... ++|++|+++++. ++.. ...+++|++|++++|+++.
T Consensus 253 ~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 778888887765 22332222 578888887542 2212 3567778888888877653
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.23 E-value=1.4e-10 Score=115.78 Aligned_cols=198 Identities=17% Similarity=0.103 Sum_probs=115.0
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
++++.|++..+. ...+|. .+++|++|+|++|.+. .+. .+++|++|+++++.+.. +....++|+.|++
T Consensus 61 ~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred CCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence 688888886543 345665 4688999999888765 333 67889999998887622 1125678888888
Q ss_pred eeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHH-----
Q 016710 205 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEW----- 279 (384)
Q Consensus 205 ~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~----- 279 (384)
.+|.... +.. .+++|+.|++++|. +..+....++|+.|.+.++.....+ ..+++|+.|++++|.++.-.
T Consensus 129 ~~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLTS-LPV-LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp CSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCCCCCc-CCC-CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence 8774322 211 24678888888774 2222223445555555554422221 22344555554444432100
Q ss_pred ----------HHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceeecccCCCCceeEEeccccc
Q 016710 280 ----------LCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 280 ----------~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~ 343 (384)
+..+...+++|+.|+++++. ++.+....++|++|+++++ .+..++..+++|++|++++|.++
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC
Confidence 00111234566666666653 3344445567777777765 44455556777888888777664
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=3.4e-11 Score=124.46 Aligned_cols=171 Identities=11% Similarity=0.014 Sum_probs=115.9
Q ss_pred CCCcEEEEEeCCCCCc----------------ccCcccc--CCCCccEEEecCeeec--CCCcc-CCCCCCeEEeeeee-
Q 016710 126 CNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD- 183 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~l~--~~~~~-~~~~L~~L~L~~~~- 183 (384)
+++++|+|..+..... .+|..+. .+++|++|+|++|.+. .|... .+++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 6899999986543221 2888887 8999999999998654 44333 79999999999997
Q ss_pred cCh-H---HHHHH---HcCCCCccEEEeeeCCCCcee---ecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcc
Q 016710 184 ATD-L---VLQSL---LIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPL 251 (384)
Q Consensus 184 ~~~-~---~l~~l---~~~~p~Le~L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~ 251 (384)
++. . .+..+ +..+|+|+.|++.+|...... .+..+++|+.|+++++. .++ .....++|+.|+++++.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc
Confidence 654 1 22222 246779999999998655222 24677899999999886 222 12256788888888876
Q ss_pred cccceeccccCcc-CcEEEeeccccchHHHHHHhccCC--CcceEeecccc
Q 016710 252 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISKFP--LLESLLIAGCD 299 (384)
Q Consensus 252 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~~p--~L~~L~l~~c~ 299 (384)
....+..+..+++ |+.|+++++.++ .+...+...+ +|+.|+++++.
T Consensus 607 l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 607 IEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred cccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCc
Confidence 4444445666777 888888877765 1222233332 36667766654
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=1.5e-11 Score=110.56 Aligned_cols=187 Identities=13% Similarity=0.041 Sum_probs=81.3
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC-CCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES-PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
+.++++.+..+. ...++ .+..+++|++|+++++.+.. +....+++|++|+++++.+.... ...+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~--i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSD--IKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCC--ccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEEC
Confidence 556666554322 11222 24456666666666655442 22224556666666655542110 111334555555555
Q ss_pred eeCCCCceee--cCCCCCCceEEeccccccceeeecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHH
Q 016710 205 QLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLC 281 (384)
Q Consensus 205 ~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~ 281 (384)
.+|....... +..+++|+.|+++++ ....... .+..+++|+.|+++++.++.. ..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~ 174 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHN---------------------QLQSLPKGVFDKLTNLTELDLSYNQLQSL-PE 174 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCC---------------------ccCccCHHHhccCccCCEEECCCCCcCcc-CH
Confidence 5553221111 223445555555544 2111111 123445555555555544321 11
Q ss_pred HHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceeecccCCCCceeEEecccc
Q 016710 282 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~ 342 (384)
..+..+++|+.|+++++..-.. ....+++|++|++.++. +...||+|+.|++..+.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHHHHT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHHHhC
Confidence 2234455555555555431111 11233555555555431 123355555555544433
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=8.9e-11 Score=107.43 Aligned_cols=164 Identities=21% Similarity=0.154 Sum_probs=111.9
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
.+++++|++..+. ...++. +..+++|++|+++++.+. .+....+++|++|+++++.+..- .. +..+++|+.|+
T Consensus 62 l~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQ--ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSC--CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCc--CCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence 4789999986543 444555 778999999999998876 33344799999999999998332 12 67899999999
Q ss_pred eeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710 204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 281 (384)
Q Consensus 204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 281 (384)
+.+|.......+..+++|+.|+++++. .+.. ....++|+.|+++++...... .+..+++|++|+++++.+.+..
T Consensus 136 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~-- 211 (308)
T 1h6u_A 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-- 211 (308)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCG--
T ss_pred CCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCCccCccc--
Confidence 999864433335567889999988875 2222 124567777777666533222 1556677777777776655432
Q ss_pred HHhccCCCcceEeecccc
Q 016710 282 NQISKFPLLESLLIAGCD 299 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~ 299 (384)
-+..+++|+.|++++++
T Consensus 212 -~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 -PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GGTTCTTCCEEEEEEEE
T ss_pred -cccCCCCCCEEEccCCe
Confidence 14566777777776654
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.20 E-value=6.1e-11 Score=106.60 Aligned_cols=199 Identities=18% Similarity=0.158 Sum_probs=125.6
Q ss_pred CcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--e
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--E 214 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~ 214 (384)
...+|..+ .++|++|+++++.+. .+ ....+++|++|+++++.+.... ...+..+++|+.|++.++...... .
T Consensus 19 l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence 44555544 256888888887665 22 2336788888888888763211 112456788888888877533221 2
Q ss_pred cCCCCCCceEEecccc--cccee-eecCCceeEEEEeCccccc--ceeccccCccCcEEEeeccccchHH--HHHHhccC
Q 016710 215 LSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIKDEW--LCNQISKF 287 (384)
Q Consensus 215 i~~~~~L~~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~ 287 (384)
+..+++|+.|.+.++. .+... ....++|++|+++++.... .+..+..+++|++|+++++.++... ...-+..+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 4457788888888775 22221 2256788888888876433 3445777899999999988765421 11222333
Q ss_pred CCcc-eEeecccccccccc---cCCCcccEEeccccccceee----cccCCCCceeEEeccccc
Q 016710 288 PLLE-SLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 288 p~L~-~L~l~~c~~l~~~~---~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~~ 343 (384)
+.|. .|+++++. +..+. ....+|++|+++++. +..+ ...+++|++|++++|++.
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccceeeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence 4443 78888765 22222 223589999998764 3333 356899999999999864
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.19 E-value=2.7e-12 Score=124.10 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=93.4
Q ss_pred CCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecC------CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCC--
Q 016710 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES------PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCP-- 197 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p-- 197 (384)
.+++|++.........+...+..+++|++|++++|.+.. +.. ..+++|++|+++++.+++.....+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 466777764443333333335568999999999987661 111 25799999999999997777777777776
Q ss_pred --CccEEEeeeCCCCc------eeecCCCCCCceEEeccccc----cceee----ecCCceeEEEEeCcccccc-----e
Q 016710 198 --LIEYLSLQLCPGLK------NLELSGLTKLNKFEVCDAEE----LQRLC----IIAQDVQEVSIQGPLPFQC-----K 256 (384)
Q Consensus 198 --~Le~L~L~~c~~~~------~~~i~~~~~L~~L~l~~~~~----l~~~~----~~~p~L~~L~l~~~~~~~~-----~ 256 (384)
+|++|++.+|.... ...+..+++|+.|+++++.- ...+. ...++|++|+++++..... .
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 79999999986432 12345678899999988751 11111 1134577777766542210 1
Q ss_pred eccccCccCcEEEeeccccch
Q 016710 257 FNLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 257 ~~~~~~~~L~~L~L~~~~~~~ 277 (384)
..+..+++|++|+++++.+++
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHH
T ss_pred HHHhhCCCCCEEECcCCCcch
Confidence 112334555555555554443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=115.79 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=150.4
Q ss_pred CCCCcccCccccCCCCccEEEecCeeec-C-C-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 137 GNPRFNLPEIILCSNSIEILTLAGLKLE-S-P-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
......+|..+. ++|++|+++++.+. . + ....+++|++|+++++.+.... ...+..+++|+.|+++++......
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC
Confidence 344566776553 68999999998776 2 2 2347999999999999874321 122567899999999998644322
Q ss_pred --ecCCCCCCceEEecccc--ccce--eeecCCceeEEEEeCcc-cccc-eeccccCccCcEEEeeccccchHHHHHHhc
Q 016710 214 --ELSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPL-PFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQIS 285 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~--~l~~--~~~~~p~L~~L~l~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 285 (384)
.+..+++|+.|+++++. .+.. .....++|++|+++++. .... ...+..+++|++|++.++.++.. ....+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHh
Confidence 24678899999999985 3322 22367899999999873 2222 23467789999999999886643 234567
Q ss_pred cCCCcceEeecccccccccc----cCCCcccEEeccccccce----------------------------------eecc
Q 016710 286 KFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLV----------------------------------EVKI 327 (384)
Q Consensus 286 ~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~~l~----------------------------------~~~~ 327 (384)
.+++|++|+++++.. ..+. ...++|++|+++++.--. +...
T Consensus 196 ~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 196 SIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp TCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred ccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 789999999998762 2222 235788999887543100 0113
Q ss_pred cCCCCceeEEeccccccceEEEEeec-cC-cceeeccCCcchhhh
Q 016710 328 AASSLSIFKYSGDVISFQLGAITFSK-SH-LLFQTENSSSEWYTE 370 (384)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~ 370 (384)
.+++|++|++++|.++.-...+ |.. .. -++..++|+..+.|+
T Consensus 275 ~l~~L~~L~Ls~N~l~~i~~~~-~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 275 QISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCCCEEECCCCCCCccCHHH-HhcCCCCCEEEeeCCCccCcCC
Confidence 5789999999999775211110 111 11 125556666555554
No 59
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=1.7e-11 Score=115.77 Aligned_cols=204 Identities=15% Similarity=0.115 Sum_probs=142.7
Q ss_pred cccCccccCCCCccEEEecCeeecCC-------CccCCCCCCeEEeeeeecC------hHHH---HHHHcCCCCccEEEe
Q 016710 141 FNLPEIILCSNSIEILTLAGLKLESP-------RSVKLSSLTKLFLMRVDAT------DLVL---QSLLIGCPLIEYLSL 204 (384)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~l~~~-------~~~~~~~L~~L~L~~~~~~------~~~l---~~l~~~~p~Le~L~L 204 (384)
..++..+..+++|++|+|++|.+... ....+++|++|+|+++.++ ...+ ...+..+++|+.|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34555666789999999999877611 1226899999999998542 1233 333568999999999
Q ss_pred eeCCCCc----ee--ecCCCCCCceEEeccccc----cceee---ecC---------CceeEEEEeCcccc--cce---e
Q 016710 205 QLCPGLK----NL--ELSGLTKLNKFEVCDAEE----LQRLC---IIA---------QDVQEVSIQGPLPF--QCK---F 257 (384)
Q Consensus 205 ~~c~~~~----~~--~i~~~~~L~~L~l~~~~~----l~~~~---~~~---------p~L~~L~l~~~~~~--~~~---~ 257 (384)
++|.... .+ .+..+++|+.|++++|.- ...+. ... ++|++|.++++... ..+ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9986442 11 234578999999999961 11111 112 89999999987643 222 2
Q ss_pred ccccCccCcEEEeeccccchHHHHH----HhccCCCcceEeecccccc----c---ccccCCCcccEEeccccccce---
Q 016710 258 NLASCKFLKYLRFALTHIKDEWLCN----QISKFPLLESLLIAGCDDL----K---SINISSRSLKLLEIYDCLRLV--- 323 (384)
Q Consensus 258 ~~~~~~~L~~L~L~~~~~~~~~~~~----l~~~~p~L~~L~l~~c~~l----~---~~~~~~~~L~~L~l~~c~~l~--- 323 (384)
.+..+++|+.|++.+|.+++..+.. .+..+++|+.|+++++..- . .....+++|++|+|++|.--.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 3557899999999999998765333 5568999999999998731 2 223456899999999875211
Q ss_pred -eec-----ccCCCCceeEEecccccc
Q 016710 324 -EVK-----IAASSLSIFKYSGDVISF 344 (384)
Q Consensus 324 -~~~-----~~~~~L~~L~l~~~~~~~ 344 (384)
.++ ..+++|++|++++|.++.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 122 238999999999998765
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.17 E-value=5.7e-11 Score=107.33 Aligned_cols=189 Identities=16% Similarity=0.094 Sum_probs=118.8
Q ss_pred CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeee-cChHHHHHHHcCCCCcc
Q 016710 126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIE 200 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le 200 (384)
+++++|++... ....++. .+..+++|++|+++++.+. .+. ...+++|++|+++++. +..-. ...+..+++|+
T Consensus 32 ~~l~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCC--cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 56777776432 2334443 4556888888888887655 222 2367888888888885 42211 12245678888
Q ss_pred EEEeeeCCCCcee--ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeecc
Q 016710 201 YLSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALT 273 (384)
Q Consensus 201 ~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~ 273 (384)
.|++.++...... .+..+++|+.|+++++. +..+. ...++|++|+++++....... .+..+++|+.|++.++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 8888877543221 24456788888888875 11111 246788888888776433332 3666788888888888
Q ss_pred ccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEecccc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDC 319 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c 319 (384)
.++... ...+..+++|+.|+++++..-. .....+++|++|++.+.
T Consensus 188 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 188 RVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 765432 3345678888888888865221 11234678888888754
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.16 E-value=4.4e-10 Score=108.45 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=29.8
Q ss_pred CccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710 198 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 198 ~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
+|+.|++.+|.......+..+++|+.|+++++. +..+....++|+.|+++++.....+ .+..+++|++|+++++.+
T Consensus 174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred cccEEECcCCcCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence 444444444432221122334445555554442 1111112234555555444322222 233444455555544443
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.16 E-value=4.8e-10 Score=110.72 Aligned_cols=212 Identities=16% Similarity=0.121 Sum_probs=136.7
Q ss_pred CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+.+++|++..+. ...+ |..+..+++|++|+++++.+. .+. ...+++|++|+++++.+..... ..+..+++|++
T Consensus 26 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCE
T ss_pred CCccEEECcCCc--cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcE
Confidence 578888886543 3333 456677999999999998765 223 3378999999999998743222 23567899999
Q ss_pred EEeeeCCCCce---eecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccc-ceeccccCccCcEEEeecc
Q 016710 202 LSLQLCPGLKN---LELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALT 273 (384)
Q Consensus 202 L~L~~c~~~~~---~~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~ 273 (384)
|++++|..... ..+..+++|+.|+++++..+..+. ...++|+.|++.++.... .+..+..+++|++|++..+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 99998854321 234567899999999886333332 256789999998876332 3334667888999999887
Q ss_pred ccchHHHHHHhccCCCcceEeeccccccc------ccccCCCcccEEecccccc-------ceeecccCCCCceeEEecc
Q 016710 274 HIKDEWLCNQISKFPLLESLLIAGCDDLK------SINISSRSLKLLEIYDCLR-------LVEVKIAASSLSIFKYSGD 340 (384)
Q Consensus 274 ~~~~~~~~~l~~~~p~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~c~~-------l~~~~~~~~~L~~L~l~~~ 340 (384)
..... ....+..+++|+.|+++++.... .+...+++|++|++.++.- +......+++|+.+++.++
T Consensus 183 ~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 65432 22334568899999998865222 1222346777777765421 1111233555555555555
Q ss_pred c
Q 016710 341 V 341 (384)
Q Consensus 341 ~ 341 (384)
.
T Consensus 262 ~ 262 (549)
T 2z81_A 262 T 262 (549)
T ss_dssp E
T ss_pred c
Confidence 4
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.16 E-value=2e-10 Score=112.69 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=41.1
Q ss_pred cCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchH-HHHHHhccCCCcceEeecccc
Q 016710 238 IAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE-WLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~p~L~~L~l~~c~ 299 (384)
..++|++|+++++.... .+..+..+++|+.|+++++.++.- .+...+..+++|+.|+++++.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 45677777777665322 233456678888888888877642 334556778888888888765
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=4e-10 Score=112.60 Aligned_cols=194 Identities=20% Similarity=0.163 Sum_probs=124.6
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
+++++|+++.+. ...+|. .+++|++|++++|.+. .+. .+++|+.|+++++.+.. +....++|+.|++
T Consensus 81 ~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEEC
T ss_pred CCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEEC
Confidence 678888886533 345565 4678888888887665 222 56777777777776522 1223466777777
Q ss_pred eeCCCCc-------------------eeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccC
Q 016710 205 QLCPGLK-------------------NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFL 265 (384)
Q Consensus 205 ~~c~~~~-------------------~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L 265 (384)
++|.... .+. ..+++|+.|+++++. +..+....++|+.|.+.++.....+ ..+++|
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L 223 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLP---ALPSGL 223 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC---CCCTTC
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccC---CCCCCC
Confidence 6663221 001 122456666666553 2223333456666666665432222 234889
Q ss_pred cEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEeccccccceee---cccCCCCceeEEecccc
Q 016710 266 KYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 266 ~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~ 342 (384)
+.|++++|.++. +...+++|+.|+++++. ++.+....++|++|+++++ .+..+ ...+++|+.|++++|++
T Consensus 224 ~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 224 KELIVSGNRLTS-----LPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CEEEccCCccCc-----CCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 999999988764 22668999999999985 5555557789999999976 33344 36799999999999987
Q ss_pred c
Q 016710 343 S 343 (384)
Q Consensus 343 ~ 343 (384)
+
T Consensus 297 ~ 297 (622)
T 3g06_A 297 S 297 (622)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=2.1e-10 Score=113.79 Aligned_cols=123 Identities=11% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCceEEeccccccceee-ecCCceeEEEEeCccccc-ceeccccCccCcEEEeeccccchH-HHHHHhccCCCcceEeec
Q 016710 220 KLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE-WLCNQISKFPLLESLLIA 296 (384)
Q Consensus 220 ~L~~L~l~~~~~l~~~~-~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~p~L~~L~l~ 296 (384)
+|+.|++.++.-..... ...++|++|+++++.... .+..+..+++|+.|++.++.++.- .+...+..+++|+.|+++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 46666666664211111 245566666666654222 222345566666666666655431 223334555666666665
Q ss_pred ccccc-------------------------cccccCC-CcccEEeccccccceeec---ccCCCCceeEEeccccc
Q 016710 297 GCDDL-------------------------KSINISS-RSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 297 ~c~~l-------------------------~~~~~~~-~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~ 343 (384)
++... ..+.... ++|++|+++++ .+..++ ..+++|++|++++|.++
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC
Confidence 54421 1111122 46666666654 233333 35778888888888764
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.16 E-value=2.8e-11 Score=121.94 Aligned_cols=209 Identities=11% Similarity=0.134 Sum_probs=121.5
Q ss_pred CCCcEEEEEeCCCCCc-ccCccccCCCCccEEEecCeeec-CCCc-cCCCC-CCeEEeeeeecChHHHHHHHcC--CCCc
Q 016710 126 CNVKELSLELLGNPRF-NLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSS-LTKLFLMRVDATDLVLQSLLIG--CPLI 199 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~l~-~~~~-~~~~~-L~~L~L~~~~~~~~~l~~l~~~--~p~L 199 (384)
+++++|++..+. .. .+| .+..+++|++|+++++.+. .+.. ..+++ |++|+++++.+. .+...+.. +++|
T Consensus 330 ~~L~~L~L~~N~--l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L 404 (636)
T 4eco_A 330 KKLGMLECLYNQ--LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVM 404 (636)
T ss_dssp TTCCEEECCSCC--CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCE
T ss_pred CCCCEEeCcCCc--Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCcc
Confidence 578888886433 33 677 6667888999999888665 3333 36788 999999888774 11112222 3478
Q ss_pred cEEEeeeCCCCce--eecC-------CCCCCceEEeccccccceee---e-cCCceeEEEEeCcccccceec--------
Q 016710 200 EYLSLQLCPGLKN--LELS-------GLTKLNKFEVCDAEELQRLC---I-IAQDVQEVSIQGPLPFQCKFN-------- 258 (384)
Q Consensus 200 e~L~L~~c~~~~~--~~i~-------~~~~L~~L~l~~~~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~-------- 258 (384)
+.|++.+|..... ..+. .+++|+.|+++++. +..+. . ..++|+.|+++++.....+..
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 8888887754321 1122 34577788887774 11222 1 357777777777653322211
Q ss_pred cccCccCcEEEeeccccchHHHHHHhc--cCCCcceEeecccccc--cccccCCCcccEEeccccc------cceee---
Q 016710 259 LASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL------RLVEV--- 325 (384)
Q Consensus 259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~p~L~~L~l~~c~~l--~~~~~~~~~L~~L~l~~c~------~l~~~--- 325 (384)
...+++|+.|+++++.++. +...+. .+++|+.|+++++..- ......+++|++|+++++. -...+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 1122377777777776652 233333 6777777777775422 1122245677777775322 11122
Q ss_pred cccCCCCceeEEecccc
Q 016710 326 KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 326 ~~~~~~L~~L~l~~~~~ 342 (384)
...+++|++|++++|.+
T Consensus 562 l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEECCCCcC
Confidence 24567777777777765
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=2.2e-10 Score=103.90 Aligned_cols=190 Identities=16% Similarity=0.058 Sum_probs=108.4
Q ss_pred cCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710 148 LCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226 (384)
Q Consensus 148 ~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l 226 (384)
..++++++++++++.+. .|... .++++.|+|+++.+..... ..+..+++|+.|++.++..........+++|+.|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 34556666666665544 22222 3566666666666522111 124456667777766654332222245567777777
Q ss_pred cccc--ccceeeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccc
Q 016710 227 CDAE--ELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS 303 (384)
Q Consensus 227 ~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~ 303 (384)
+++. .+.......++|++|+++++...... ..+..+++|++|++.++.++.- ....+..+++|+.|+++++. ++.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~ 162 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LTE 162 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CSC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CCc
Confidence 7664 22222224567777777776543332 2356678888888887776532 12345567888888888764 222
Q ss_pred cc----cCCCcccEEeccccccceeec---ccCCCCceeEEecccc
Q 016710 304 IN----ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDVI 342 (384)
Q Consensus 304 ~~----~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~ 342 (384)
+. ...++|++|++.++. +..++ ...++|+.|++.+|+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 22 235788888887542 22333 3466788888888765
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=1.6e-10 Score=114.12 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec---CCC-ccCCCCCCeEEeeeeec-ChHHHHHHHcCCCCc
Q 016710 126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE---SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLI 199 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~---~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L 199 (384)
.++++|+++.+ ....++.. +..+++|++|+++++.+. .+. ...+++|++|+++++.. +.- ....+..+++|
T Consensus 74 ~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L 150 (549)
T 2z81_A 74 GSLEHLDLSDN--HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL 150 (549)
T ss_dssp TTCCEEECTTS--CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEE
T ss_pred ccCCEEECCCC--ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhccccc
Confidence 57777777533 23444443 566788888888887664 222 23678888888888763 221 11124567888
Q ss_pred cEEEeeeCCC
Q 016710 200 EYLSLQLCPG 209 (384)
Q Consensus 200 e~L~L~~c~~ 209 (384)
+.|++.++..
T Consensus 151 ~~L~L~~n~l 160 (549)
T 2z81_A 151 NELEIKALSL 160 (549)
T ss_dssp EEEEEEETTC
T ss_pred CeeeccCCcc
Confidence 8888887653
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.14 E-value=5.2e-11 Score=109.06 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=49.1
Q ss_pred ccCccCcEEEeeccccchHHHHHHhccC---CCcceEeecccccccccccC-CCcccEEeccccccce-eecccCCCCce
Q 016710 260 ASCKFLKYLRFALTHIKDEWLCNQISKF---PLLESLLIAGCDDLKSINIS-SRSLKLLEIYDCLRLV-EVKIAASSLSI 334 (384)
Q Consensus 260 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~---p~L~~L~l~~c~~l~~~~~~-~~~L~~L~l~~c~~l~-~~~~~~~~L~~ 334 (384)
..+++|++|++++|.+++.. ...+..+ ++|++|+++++. ++.+... .++|++|+++++.--. ..+..+++|++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~ 298 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDN 298 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSC
T ss_pred hcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccE
Confidence 44577777777777655421 1112223 677777777765 2222221 2688888887553111 23467788888
Q ss_pred eEEecccccc
Q 016710 335 FKYSGDVISF 344 (384)
Q Consensus 335 L~l~~~~~~~ 344 (384)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 8888887653
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=8.9e-11 Score=108.51 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=16.1
Q ss_pred cccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 259 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 259 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
+..+++|+.|++.++.++... ...+..+++|+.|+++++
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCC
Confidence 334444555555444433211 112334445555555443
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=7.9e-11 Score=121.76 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=120.4
Q ss_pred CCCcEEEEEeCCCCCcccCc--cccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCC-ccE
Q 016710 126 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPL-IEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~-Le~ 201 (384)
++++.|++..+.. ..+|. .+..+++|+.|+|+++.+. .+....+++|+.|+|+++.+. .+...+..++. |+.
T Consensus 548 ~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 4788888765443 37777 7777888888888887655 443336778888888887764 22222455666 777
Q ss_pred EEeeeCCCCceee--cC--CCCCCceEEeccccc----------------------------cceee----ecCCceeEE
Q 016710 202 LSLQLCPGLKNLE--LS--GLTKLNKFEVCDAEE----------------------------LQRLC----IIAQDVQEV 245 (384)
Q Consensus 202 L~L~~c~~~~~~~--i~--~~~~L~~L~l~~~~~----------------------------l~~~~----~~~p~L~~L 245 (384)
|++.+|... .+. +. ..++|+.|+++++.- +..+. ..+++|+.|
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 777776432 111 01 112244555444430 11111 134556666
Q ss_pred EEeCcccccceec--------cccCccCcEEEeeccccchHHHHHHhc--cCCCcceEeeccccc--ccccccCCCcccE
Q 016710 246 SIQGPLPFQCKFN--------LASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDD--LKSINISSRSLKL 313 (384)
Q Consensus 246 ~l~~~~~~~~~~~--------~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~p~L~~L~l~~c~~--l~~~~~~~~~L~~ 313 (384)
+++++.....+.. ..++++|+.|+|++|.++ .+...+. .+++|+.|+++++.. +......+++|+.
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCE
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCE
Confidence 6655442221111 112347888888877765 2333444 778888888887652 2222235578888
Q ss_pred Eeccccc-----c-ceee---cccCCCCceeEEecccc
Q 016710 314 LEIYDCL-----R-LVEV---KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 314 L~l~~c~-----~-l~~~---~~~~~~L~~L~l~~~~~ 342 (384)
|+|+++. . ...+ ...+++|++|++++|.+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8886522 1 1122 25688888888888876
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.13 E-value=2.6e-10 Score=100.26 Aligned_cols=184 Identities=10% Similarity=0.065 Sum_probs=95.9
Q ss_pred CccEEEecCeeec-C-C-CccCCCCCCeEEeeeee-cChHHHHHHHcCCCCccEEEeeeCCCCceee---cCCCCCCceE
Q 016710 152 SIEILTLAGLKLE-S-P-RSVKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKF 224 (384)
Q Consensus 152 ~L~~L~L~~~~l~-~-~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i~~~~~L~~L 224 (384)
+|++|+++++.+. . + ....+++|++|+++++. ++.-. ...+..+++|+.|++.+|..++.+. +..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5556666555443 1 1 11245566666666553 31100 0113455666666666533333322 1245566666
Q ss_pred Eecccc--ccceeeecCCcee---EEEEeCc-cccccee-ccccCccCc-EEEeeccccchHHHHHHhccCCCcceEeec
Q 016710 225 EVCDAE--ELQRLCIIAQDVQ---EVSIQGP-LPFQCKF-NLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESLLIA 296 (384)
Q Consensus 225 ~l~~~~--~l~~~~~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~ 296 (384)
++.++. .++. ....++|+ .|+++++ .....+. .+..+++|+ .|+++++.++.-. ...+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcC
Confidence 666553 2221 11344444 7777766 3322222 256677888 8888777655211 122233 678888888
Q ss_pred cccccccc----ccCC-CcccEEeccccccceeec-ccCCCCceeEEecc
Q 016710 297 GCDDLKSI----NISS-RSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGD 340 (384)
Q Consensus 297 ~c~~l~~~----~~~~-~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~ 340 (384)
+++.++.+ ...+ ++|++|++.+. .+..++ ...++|++|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence 87544333 2234 77888888763 333333 35778888887664
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.12 E-value=1.1e-10 Score=107.95 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=129.4
Q ss_pred CCCcEEEEEeCCCCCcccC-ccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
++++.|++..+. ...++ ..+..+++|++|+++++.+. .+.. ..+++|++|+++++.+..- . ....++|++
T Consensus 54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~--~~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--P--PNLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC--C--SSCCTTCCE
T ss_pred CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc--C--ccccccCCE
Confidence 467777665332 33443 34566778888888777655 2222 2577888888877766310 0 012367888
Q ss_pred EEeeeCCCCcee--ecCCCCCCceEEeccccc----cceeeecCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710 202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEE----LQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~----l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
|++.++...... .+..+++|+.|++.++.- .........+|+.|+++++.....+..+ .++|++|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCcC
Confidence 888776533211 245567888888877641 1111112226777777766533322222 37899999998876
Q ss_pred chHHHHHHhccCCCcceEeecccccccc---cccCCCcccEEeccccccceee---cccCCCCceeEEecccccc
Q 016710 276 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 276 ~~~~~~~l~~~~p~L~~L~l~~c~~l~~---~~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~L~l~~~~~~~ 344 (384)
+... ...+..+++|+.|+++++..-.. ....+++|++|+++++. +..+ ...+++|++|++++|.++.
T Consensus 206 ~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 206 QAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCc
Confidence 5432 23456789999999998752221 23356899999999763 3334 3568999999999998754
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=4.1e-11 Score=107.64 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=104.8
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCC--ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.+++++|++..+. ...+ ..+..+++|++|+++++.+. .+. ...+++|++|+++++.+.... ...+..+++|+.
T Consensus 62 l~~L~~L~l~~n~--l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 137 (272)
T 3rfs_A 62 LPNVRYLALGGNK--LHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTY 137 (272)
T ss_dssp CTTCCEEECTTSC--CCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCCcEEECCCCC--CCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCCE
Confidence 4789999886533 2233 35678999999999998776 222 236999999999999873211 123567899999
Q ss_pred EEeeeCCCCceee--cCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHH
Q 016710 202 LSLQLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEW 279 (384)
Q Consensus 202 L~L~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 279 (384)
|++.+|....... +..+++|+.|+++++. +..+. ...+..+++|+.|++.++.++..
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------------~~~~~~l~~L~~L~L~~N~l~~~- 196 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-------------------EGVFDKLTQLKDLRLYQNQLKSV- 196 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-------------------TTTTTTCTTCCEEECCSSCCSCC-
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCC-cCccC-------------------HHHhcCCccCCEEECCCCcCCcc-
Confidence 9999985332111 3456677777777763 11111 11134566777777776665432
Q ss_pred HHHHhccCCCcceEeecccccccccccCCCcccEEeccc
Q 016710 280 LCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYD 318 (384)
Q Consensus 280 ~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~ 318 (384)
....+..+++|+.|++++++ +...+++|+.|.+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWI 231 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHH
T ss_pred CHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHH
Confidence 12334567777777777764 334456677666653
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.11 E-value=2.6e-10 Score=103.44 Aligned_cols=98 Identities=20% Similarity=0.117 Sum_probs=48.0
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
..++.+++..+. ...++ .+..+++|++|+++++.+. .+....+++|+.|+++++.+..- . -+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--h-hhccCCCCCEEEC
Confidence 456666554322 22333 2445666666666666554 22233566666666666665221 1 1445566666666
Q ss_pred eeCCCCceeecCCCCCCceEEeccc
Q 016710 205 QLCPGLKNLELSGLTKLNKFEVCDA 229 (384)
Q Consensus 205 ~~c~~~~~~~i~~~~~L~~L~l~~~ 229 (384)
.+|.......+..+++|+.|+++++
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNN 144 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCCChhhcCCCCCCEEEccCC
Confidence 6553222112233445555555544
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=4e-10 Score=98.98 Aligned_cols=191 Identities=12% Similarity=0.001 Sum_probs=103.4
Q ss_pred CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCee-ec-CC-Cc-cCCCCCCeEEeee-eecChHHHHHHHcCCCCc
Q 016710 126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLK-LE-SP-RS-VKLSSLTKLFLMR-VDATDLVLQSLLIGCPLI 199 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~-~~-~~-~~~~~L~~L~L~~-~~~~~~~l~~l~~~~p~L 199 (384)
..+++|++.... ...+|. .+..+++|++|+++++. +. .+ .. ..+++|++|++++ +.+..-. ...+..+++|
T Consensus 31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 367777775432 344444 34457777777777764 43 22 22 2577777777776 4442111 1124467777
Q ss_pred cEEEeeeCCCCceeecCCCCCCc---eEEeccccccceee----ecCCcee-EEEEeCcccccceeccccCccCcEEEee
Q 016710 200 EYLSLQLCPGLKNLELSGLTKLN---KFEVCDAEELQRLC----IIAQDVQ-EVSIQGPLPFQCKFNLASCKFLKYLRFA 271 (384)
Q Consensus 200 e~L~L~~c~~~~~~~i~~~~~L~---~L~l~~~~~l~~~~----~~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~L~ 271 (384)
+.|++.++.......+..+++|+ .|+++++..+..+. ..+++|+ .|+++++.....+...-..++|+.|++.
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 77777776433222234455665 77777763333322 1356777 7777665533222221122677777777
Q ss_pred ccc-cchHHHHHHhccC-CCcceEeeccccccccccc-CCCcccEEecccccc
Q 016710 272 LTH-IKDEWLCNQISKF-PLLESLLIAGCDDLKSINI-SSRSLKLLEIYDCLR 321 (384)
Q Consensus 272 ~~~-~~~~~~~~l~~~~-p~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~c~~ 321 (384)
++. ++.- ....+.++ ++|+.|+++++. ++.+.. .+++|+.|.+.+++.
T Consensus 188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccC
Confidence 763 4421 12334556 777777777654 222222 356777777776654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=106.53 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=143.0
Q ss_pred cceeEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEeCCCCCcccCccc--cCCCCccEEEecCeeecCCCc-----
Q 016710 96 RLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEII--LCSNSIEILTLAGLKLESPRS----- 168 (384)
Q Consensus 96 ~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~l~~~~~----- 168 (384)
.++.+.+.-. ......+..........++++|++..+.. ....|..+ ..+++|++|+++++.+.....
T Consensus 65 ~l~~l~l~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAA----QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSC----CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCC----cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 4566655522 12224444545555557899999976442 23445555 678999999999987762111
Q ss_pred --cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce------eecCCCCCCceEEeccccc--ccee---
Q 016710 169 --VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN------LELSGLTKLNKFEVCDAEE--LQRL--- 235 (384)
Q Consensus 169 --~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~------~~i~~~~~L~~L~l~~~~~--l~~~--- 235 (384)
..+++|++|+++++.+.... ...+..+++|+.|++++|..... .....+++|+.|.+++|.- +...
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 25899999999999883211 12356789999999999874421 1234678999999999861 1221
Q ss_pred -eecCCceeEEEEeCcccccc-eeccccC---ccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc-ccccCCC
Q 016710 236 -CIIAQDVQEVSIQGPLPFQC-KFNLASC---KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINISSR 309 (384)
Q Consensus 236 -~~~~p~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~-~~~~~~~ 309 (384)
....++|++|+++++..... +..+..+ ++|++|++++|.++. +...+ +++|+.|+++++.--. .....++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~~~~~~~l~ 294 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNRAPQPDELP 294 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCSCCCTTSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCCCchhhhCC
Confidence 22568999999998874443 3333444 799999999998762 22212 4899999999976322 2345568
Q ss_pred cccEEecccc
Q 016710 310 SLKLLEIYDC 319 (384)
Q Consensus 310 ~L~~L~l~~c 319 (384)
+|++|++++.
T Consensus 295 ~L~~L~L~~N 304 (310)
T 4glp_A 295 EVDNLTLDGN 304 (310)
T ss_dssp CCSCEECSST
T ss_pred CccEEECcCC
Confidence 9999999854
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=3.1e-10 Score=113.20 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=109.7
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
...++.|++..+. ...++ .+..+++|+.|+|++|.+. .+....+++|+.|+|+++.+..- . .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence 3678887775432 33444 4667889999999888766 33344788899999998887321 1 356788888888
Q ss_pred eeeCCCCceeecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710 204 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 281 (384)
Q Consensus 204 L~~c~~~~~~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 281 (384)
|.+|.......+..+++|+.|++++|. .+ .....+++|+.|+++++....... +..+++|+.|+|++|.+.+-
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--- 190 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--- 190 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC---
Confidence 888764433334567788888888875 22 111256778888887766433222 66778888888887776542
Q ss_pred HHhccCCCcceEeecccc
Q 016710 282 NQISKFPLLESLLIAGCD 299 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~ 299 (384)
..+..+++|+.|+++++.
T Consensus 191 ~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGTTCTTCSEEECCSEE
T ss_pred hHHccCCCCCEEEccCCc
Confidence 235667888888887765
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.08 E-value=9.5e-11 Score=107.40 Aligned_cols=201 Identities=14% Similarity=0.071 Sum_probs=131.7
Q ss_pred ccCccccCCCCccEEEecCeeec---CCCcc--------CCCCCCeEEeeeeecChHHHHHH-HcCCCCccEEEeeeCCC
Q 016710 142 NLPEIILCSNSIEILTLAGLKLE---SPRSV--------KLSSLTKLFLMRVDATDLVLQSL-LIGCPLIEYLSLQLCPG 209 (384)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~l~---~~~~~--------~~~~L~~L~L~~~~~~~~~l~~l-~~~~p~Le~L~L~~c~~ 209 (384)
.+|..+... |+.|+++++.+. .+... .+++|++|+++++.+.......+ +..+++|+.|+++++..
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 445544333 777777776553 22222 48999999999998843222222 36789999999998754
Q ss_pred Ccee-ecCC-----CCCCceEEecccc--ccc-eeeecCCceeEEEEeCccccc---c--eeccccCccCcEEEeecccc
Q 016710 210 LKNL-ELSG-----LTKLNKFEVCDAE--ELQ-RLCIIAQDVQEVSIQGPLPFQ---C--KFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 210 ~~~~-~i~~-----~~~L~~L~l~~~~--~l~-~~~~~~p~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~L~~~~~ 275 (384)
.... .+.. .++|+.|+++++. .+. ......++|+.|+++++.... . ...+..+++|++|+++++.+
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 3211 1111 2799999999886 211 112357899999998876221 1 12236789999999999987
Q ss_pred ch--HHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceeecccC-CCCceeEEeccccccc
Q 016710 276 KD--EWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVKIAA-SSLSIFKYSGDVISFQ 345 (384)
Q Consensus 276 ~~--~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~~~~~~~ 345 (384)
+. .....++..+++|+.|+++++..-... ....++|++|+++++. +..++... ++|++|++++|.++..
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSC
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCC
Confidence 73 333456678899999999987633211 2234799999998763 33444332 6899999999987544
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.07 E-value=7.1e-10 Score=110.00 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred ccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc--c---cccCCCcccEEeccccccc---e-eecccCC
Q 016710 260 ASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK--S---INISSRSLKLLEIYDCLRL---V-EVKIAAS 330 (384)
Q Consensus 260 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~--~---~~~~~~~L~~L~l~~c~~l---~-~~~~~~~ 330 (384)
..+++|++|+++++.+++. ....+..+++|+.|+++++..-. . ....+++|++|+++++.-- . .....++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5678999999999987753 23456789999999999975221 2 1245688999998865321 1 1123344
Q ss_pred CCceeEEecccc
Q 016710 331 SLSIFKYSGDVI 342 (384)
Q Consensus 331 ~L~~L~l~~~~~ 342 (384)
+|++|++++|.+
T Consensus 429 ~L~~L~l~~n~l 440 (562)
T 3a79_B 429 SILVLNLSSNML 440 (562)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCCC
Confidence 555555555443
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.07 E-value=1.4e-10 Score=117.56 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=57.3
Q ss_pred cCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHH-------HHHhccCCCcceEeeccccccccc----c
Q 016710 238 IAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWL-------CNQISKFPLLESLLIAGCDDLKSI----N 305 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~-------~~l~~~~p~L~~L~l~~c~~l~~~----~ 305 (384)
.+++|+.|+++++....... .+..+++|+.|+++++.++.-.. ...+.++++|+.|+++++. +..+ .
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence 34566666666654322221 24556777777777666543110 0124566777777777654 2222 2
Q ss_pred cCCCcccEEeccccccceeec----ccCCCCceeEEeccccc
Q 016710 306 ISSRSLKLLEIYDCLRLVEVK----IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 306 ~~~~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~ 343 (384)
..+++|++|++++. .+..++ ..+++|++|++++|.++
T Consensus 557 ~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 557 KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 34467777777643 233222 45677888888777653
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.07 E-value=4.7e-10 Score=116.63 Aligned_cols=79 Identities=13% Similarity=0.036 Sum_probs=50.4
Q ss_pred ccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc---ccccCCCcccEEeccccc--cce-eecccCCCCceeE
Q 016710 263 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFK 336 (384)
Q Consensus 263 ~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~ 336 (384)
++|+.|+++++.+... ....+..+++|+.|+++++..-. .....+++|++|+++++. ++. .....+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5677777777665432 13345667888888888765221 122345788888888653 221 2335688899999
Q ss_pred Eecccc
Q 016710 337 YSGDVI 342 (384)
Q Consensus 337 l~~~~~ 342 (384)
+++|.+
T Consensus 345 L~~N~i 350 (844)
T 3j0a_A 345 LQKNHI 350 (844)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 988865
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.07 E-value=8.1e-11 Score=110.21 Aligned_cols=196 Identities=16% Similarity=0.038 Sum_probs=91.6
Q ss_pred cCCC-CccEEEecCeeecCCCc--c-C-----CCCCCeEEeeeeecCh---HHHHHHHcCC-CCccEEEeeeCCCCcee-
Q 016710 148 LCSN-SIEILTLAGLKLESPRS--V-K-----LSSLTKLFLMRVDATD---LVLQSLLIGC-PLIEYLSLQLCPGLKNL- 213 (384)
Q Consensus 148 ~~~~-~L~~L~L~~~~l~~~~~--~-~-----~~~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~~~~~- 213 (384)
..++ +|++|+|++|.+..... . . +++|++|+|++|.+++ ..+...+..+ ++|+.|++++|......
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 3445 56666666655541111 1 1 2566666666666522 2333334444 56666666665422110
Q ss_pred -e----cCC-CCCCceEEecccccc----ceee---ecC-CceeEEEEeCccccccee-----ccccC-ccCcEEEeecc
Q 016710 214 -E----LSG-LTKLNKFEVCDAEEL----QRLC---IIA-QDVQEVSIQGPLPFQCKF-----NLASC-KFLKYLRFALT 273 (384)
Q Consensus 214 -~----i~~-~~~L~~L~l~~~~~l----~~~~---~~~-p~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~L~~~ 273 (384)
. +.. .++|+.|+++++.-. ..+. ... ++|++|+++++....... .+..+ ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 0 111 136666666665310 0110 112 266666666654221111 12233 36777777766
Q ss_pred ccchHH---HHHHhcc-CCCcceEeeccccccc-------ccccCCCcccEEeccccc--c-----ceee---cccCCCC
Q 016710 274 HIKDEW---LCNQISK-FPLLESLLIAGCDDLK-------SINISSRSLKLLEIYDCL--R-----LVEV---KIAASSL 332 (384)
Q Consensus 274 ~~~~~~---~~~l~~~-~p~L~~L~l~~c~~l~-------~~~~~~~~L~~L~l~~c~--~-----l~~~---~~~~~~L 332 (384)
.+++.. +...+.. .++|+.|+++++..-. ......++|++|+++++. . +..+ ...+++|
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 655432 2222223 3467777777654211 111234667777776543 1 1111 1345556
Q ss_pred ceeEEeccccc
Q 016710 333 SIFKYSGDVIS 343 (384)
Q Consensus 333 ~~L~l~~~~~~ 343 (384)
+.|++++|.+.
T Consensus 287 ~~LdL~~N~l~ 297 (362)
T 3goz_A 287 ILVDKNGKEIH 297 (362)
T ss_dssp EEECTTSCBCC
T ss_pred EEEecCCCcCC
Confidence 66666666653
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.06 E-value=6.9e-10 Score=112.56 Aligned_cols=148 Identities=13% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc-ccceee------ecCCceeEEEEeCcccccc-eeccccCcc
Q 016710 195 GCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE-ELQRLC------IIAQDVQEVSIQGPLPFQC-KFNLASCKF 264 (384)
Q Consensus 195 ~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~-~l~~~~------~~~p~L~~L~l~~~~~~~~-~~~~~~~~~ 264 (384)
.+++|+.|++.++..... ..+..+++|+.|+++++. ....+. ...++|+.|+++++..... +..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 455556665555432211 112345566666666543 111111 0113455555544432111 112344566
Q ss_pred CcEEEeeccccchHHHHHHhccCCCcceEeecccccc-----------------------------cccccCCCcccEEe
Q 016710 265 LKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL-----------------------------KSINISSRSLKLLE 315 (384)
Q Consensus 265 L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l-----------------------------~~~~~~~~~L~~L~ 315 (384)
|+.|+++++.+........+.++++|+.|+++++... ......+++|++|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 6666666555432211123344555555555554311 11112335666666
Q ss_pred ccccccceee----cccCCCCceeEEeccccc
Q 016710 316 IYDCLRLVEV----KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 316 l~~c~~l~~~----~~~~~~L~~L~l~~~~~~ 343 (384)
++++. +..+ ...+++|++|++++|.+.
T Consensus 487 Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 487 LSNNN-IANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCC-CCcCChhhhccccccCEEeCCCCCcc
Confidence 66542 2222 245677777777777654
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.06 E-value=7.6e-10 Score=108.60 Aligned_cols=172 Identities=10% Similarity=0.021 Sum_probs=81.4
Q ss_pred CCCCCCeEEeeeeec--ChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccc---cceeeecCCceeE
Q 016710 170 KLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQE 244 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~ 244 (384)
.+++|+.+++.++.+ ....+...+. .++|+.|.+.++..........+++|+.|+++++.- ........++|++
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred cCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 355555555555544 2122222221 234666666655432211113455666666666541 1111124556666
Q ss_pred EEEeCccccc---ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCC-CcccEEeccccc
Q 016710 245 VSIQGPLPFQ---CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL 320 (384)
Q Consensus 245 L~l~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~-~~L~~L~l~~c~ 320 (384)
|+++++.... .+..+..+++|++|+++++.+........+..+++|+.|+++++.....+.... ++|++|+++++.
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc
Confidence 6666554322 112244566666666666655432112234445666666666654322222222 466666666542
Q ss_pred cceeec---ccCCCCceeEEeccccc
Q 016710 321 RLVEVK---IAASSLSIFKYSGDVIS 343 (384)
Q Consensus 321 ~l~~~~---~~~~~L~~L~l~~~~~~ 343 (384)
+..++ ..+++|++|++++|.+.
T Consensus 433 -l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 433 -IKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp -CCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -ccccchhhhcCCCCCEEECCCCcCC
Confidence 22222 24666666666666543
No 86
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=4.4e-10 Score=95.75 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeecCC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
++++++++..+. ...+| .+..+++|++|++++|.+... ....+++|++|+++++.+....... +..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANIN--VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSC--CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred CCccEEeccCCC--ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence 456666665432 22334 344555666666655544322 1224555555555555442211111 233444444444
Q ss_pred eeC
Q 016710 205 QLC 207 (384)
Q Consensus 205 ~~c 207 (384)
.+|
T Consensus 120 s~n 122 (197)
T 4ezg_A 120 SHS 122 (197)
T ss_dssp CSS
T ss_pred cCC
Confidence 444
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=7.9e-10 Score=94.14 Aligned_cols=148 Identities=19% Similarity=0.144 Sum_probs=98.5
Q ss_pred CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeC
Q 016710 170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG 249 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~ 249 (384)
.+++|+.|+++++.+.+-. -+..+++|+.|++.+|.......+..+++|+.|+++++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-------------------- 98 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-------------------- 98 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT--------------------
T ss_pred hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC--------------------
Confidence 5788888988888773211 25667888888888873222113334445555555544
Q ss_pred ccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc--cCCCcccEEecccccccee--
Q 016710 250 PLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCLRLVE-- 324 (384)
Q Consensus 250 ~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~c~~l~~-- 324 (384)
.... ....+..+++|++|+++++.+++.. ...+..+++|+.|++++|..+..+. ..+++|++|+++++. +..
T Consensus 99 -~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 99 -DVTSDKIPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp -TCBGGGSCCCTTCTTCCEEECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT
T ss_pred -ccCcccChhhcCCCCCCEEEecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH
Confidence 3221 2234667899999999999887644 3455789999999999987444332 346899999998763 332
Q ss_pred ecccCCCCceeEEeccccc
Q 016710 325 VKIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 325 ~~~~~~~L~~L~l~~~~~~ 343 (384)
....+++|++|++++|++.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 3467999999999999764
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=7.2e-10 Score=100.48 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=90.7
Q ss_pred CCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEec
Q 016710 149 CSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVC 227 (384)
Q Consensus 149 ~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~ 227 (384)
.+++|+.|+++++.+. .+....+++|++|+++++.+.+.. . +..+++|+.|++.++.......+..+++|+.|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence 4788999999998776 444447999999999999883321 1 77899999999998864433345667888888888
Q ss_pred ccccccee--eecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 228 DAEELQRL--CIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 228 ~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
++. +..+ ....++|+.|+++++..... ..+..+++|+.|+++++.+++.. . +..+++|+.|+++++
T Consensus 121 ~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 121 HNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp TSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred CCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC
Confidence 875 1111 11345666666655543222 23445566666666655544321 1 445566666666554
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.05 E-value=7.2e-10 Score=99.28 Aligned_cols=186 Identities=17% Similarity=0.126 Sum_probs=95.8
Q ss_pred CcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CC--CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 128 VKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP--RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 128 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
.+.+++. ......+|..+ .++|++|+++++.+. .+ ....+++|++|+++++.+..-. ...+..+++|+.|++
T Consensus 18 ~~~l~~~--~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCS--SKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECT--TSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEEC
T ss_pred CCEEEcc--CCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEEC
Confidence 4444442 33344555544 256788888877665 22 1225777888888777652111 122355677777777
Q ss_pred eeCCCCcee--ecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHH
Q 016710 205 QLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLC 281 (384)
Q Consensus 205 ~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~ 281 (384)
.++...... .+..+++|+.|+++++. ..... ..+..+++|++|+++++.++... .
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~ 150 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ---------------------LKSLPPRVFDSLTKLTYLSLGYNELQSLP-K 150 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC---------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc---------------------cCeeCHHHhCcCcCCCEEECCCCcCCccC-H
Confidence 766432111 12334555666555543 11111 12345566666666666544211 1
Q ss_pred HHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceee----cccCCCCceeEEecccc
Q 016710 282 NQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEV----KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~~~~ 342 (384)
..+..+++|+.|+++++. +..+ ...+++|++|+++++ .+..+ ...+++|+.|++++|++
T Consensus 151 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 224456666666666653 1111 123466677776654 22222 23466777777777764
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=9.2e-10 Score=98.58 Aligned_cols=168 Identities=18% Similarity=0.129 Sum_probs=98.0
Q ss_pred CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec-CCC-c-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~-~~~-~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.++++|++.... ...++. .+..+++|++|+++++.+. .+. . ..+++|++|+++++.+..-. ...+..+++|+.
T Consensus 37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 578999886433 445554 5667999999999998776 332 2 36999999999999873211 123567899999
Q ss_pred EEeeeCCCCcee--ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeeccc
Q 016710 202 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTH 274 (384)
Q Consensus 202 L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 274 (384)
|++.++...... .+..+++|+.|+++++. +..+. ...++|+.|+++++....... .+..+++|+.|++.++.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 999987543221 23456788888888774 21111 123455555555443222111 13344555555555444
Q ss_pred cchHHHHHHhccCCCcceEeeccc
Q 016710 275 IKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 275 ~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
++.- ....+..+++|+.|+++++
T Consensus 193 l~~~-~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 193 LKRV-PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCcC-CHHHhccccCCCEEEecCC
Confidence 3321 1112334445555555443
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.04 E-value=7e-10 Score=115.36 Aligned_cols=212 Identities=18% Similarity=0.158 Sum_probs=117.6
Q ss_pred CCCcEEEEEeCCCCCccc-CccccCCCCccEEEecCeeec--CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
.++++|++..+. ...+ +..+..+++|+.|+|+++.+. .+.. ..+++|++|+|+++.++... ...+..+++|+.
T Consensus 266 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCE
T ss_pred CCccEEECCCCc--ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCE
Confidence 466777664322 2222 344556788888888887655 2322 36788888888888763211 112456788888
Q ss_pred EEeeeCCCCc--eeecCCCCCCceEEeccccccceeeecCCceeEEEEeCccccccee----------------------
Q 016710 202 LSLQLCPGLK--NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF---------------------- 257 (384)
Q Consensus 202 L~L~~c~~~~--~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~---------------------- 257 (384)
|++.++.... ...+..+++|+.|+++++. +..+. ..|+|+.|.++++.....+.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH-FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS-SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc-CCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 8888774321 1123456788888888774 22222 25667777776654221110
Q ss_pred ccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc--------ccccCCCcccEEeccccccce----ee
Q 016710 258 NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK--------SINISSRSLKLLEIYDCLRLV----EV 325 (384)
Q Consensus 258 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~--------~~~~~~~~L~~L~l~~c~~l~----~~ 325 (384)
.+..+++|+.|+++++.++.......+..+++|+.|+++++..-. .....+++|++|+++++ .+. ..
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 499 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGV 499 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTS
T ss_pred hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhH
Confidence 022455666666655554321111122335566666666543110 11223467777777754 222 22
Q ss_pred cccCCCCceeEEeccccc
Q 016710 326 KIAASSLSIFKYSGDVIS 343 (384)
Q Consensus 326 ~~~~~~L~~L~l~~~~~~ 343 (384)
...+++|++|++++|.++
T Consensus 500 ~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp SSSCCSCSEEEEESCCCS
T ss_pred ccchhhhheeECCCCCCC
Confidence 356899999999999774
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.02 E-value=3.4e-09 Score=102.19 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=42.8
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
+++++|++..+. ...+| .+..+++|++|+++++.+. .+. ..++|++|+++++.+.. +. -+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~--l~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQ--LEKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCC--CCCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEEC
Confidence 477777775433 33466 4666777888877776554 121 23466777776666522 11 1345566666666
Q ss_pred eeCC
Q 016710 205 QLCP 208 (384)
Q Consensus 205 ~~c~ 208 (384)
.+|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5553
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=3.9e-10 Score=112.41 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=89.8
Q ss_pred CCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecc
Q 016710 150 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCD 228 (384)
Q Consensus 150 ~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~ 228 (384)
+++|+.|+++++.+. .+....+++|+.|+|+++.+....- +..+++|+.|+|.+|.......+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 566666666666554 3333356777777777666622111 556677777777766433222344566777777776
Q ss_pred cc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc--
Q 016710 229 AE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI-- 304 (384)
Q Consensus 229 ~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~-- 304 (384)
+. .+.. ...+++|+.|+++++..... ..+..+++|+.|+|++|.+.+.. . +..+++|+.|+|+++. +..+
T Consensus 119 N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-i~~l~~ 192 (605)
T 1m9s_A 119 NGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH-ISDLRA 192 (605)
T ss_dssp SCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCBCGG
T ss_pred CCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCC-CCCChH
Confidence 64 2111 12456677777766553332 23555667777777666655422 1 5566777777776654 2111
Q ss_pred ccCCCcccEEecccc
Q 016710 305 NISSRSLKLLEIYDC 319 (384)
Q Consensus 305 ~~~~~~L~~L~l~~c 319 (384)
...+++|+.|+|.++
T Consensus 193 l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCSEEECCSE
T ss_pred HccCCCCCEEEccCC
Confidence 223466777776654
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=6.9e-10 Score=103.84 Aligned_cols=197 Identities=14% Similarity=0.028 Sum_probs=133.7
Q ss_pred cCccccCCCCccEEEecCeeecCCC------c-cCCC-CCCeEEeeeeecCh---HHHHHHHcCC-CCccEEEeeeCCCC
Q 016710 143 LPEIILCSNSIEILTLAGLKLESPR------S-VKLS-SLTKLFLMRVDATD---LVLQSLLIGC-PLIEYLSLQLCPGL 210 (384)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~l~~~~------~-~~~~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~~ 210 (384)
+|..+...++|++|++++|.+.... . ..++ +|++|+|++|.+++ ..+...+..+ +.|++|++++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3444444667999999999877322 1 2578 89999999999843 3455555554 99999999998643
Q ss_pred cee------ecCCC-CCCceEEeccccccceeee--------c-CCceeEEEEeCcccccce-----eccccCc-cCcEE
Q 016710 211 KNL------ELSGL-TKLNKFEVCDAEELQRLCI--------I-AQDVQEVSIQGPLPFQCK-----FNLASCK-FLKYL 268 (384)
Q Consensus 211 ~~~------~i~~~-~~L~~L~l~~~~~l~~~~~--------~-~p~L~~L~l~~~~~~~~~-----~~~~~~~-~L~~L 268 (384)
... .+..+ ++|+.|+++++. +..... . +++|++|+++++...... ..+...+ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 211 12233 699999999996 222111 1 359999999987633211 1233444 99999
Q ss_pred EeeccccchH---HHHHHhccCC-CcceEeeccccccc----ccc----cCCCcccEEeccccccce--------eeccc
Q 016710 269 RFALTHIKDE---WLCNQISKFP-LLESLLIAGCDDLK----SIN----ISSRSLKLLEIYDCLRLV--------EVKIA 328 (384)
Q Consensus 269 ~L~~~~~~~~---~~~~l~~~~p-~L~~L~l~~c~~l~----~~~----~~~~~L~~L~l~~c~~l~--------~~~~~ 328 (384)
++++|.+++. .+...+..++ +|+.|+++++..-. .+. ...++|++|+++++. +. .....
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDS 251 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhc
Confidence 9999987653 3445566674 99999999986222 011 123699999999753 22 22356
Q ss_pred CCCCceeEEeccc
Q 016710 329 ASSLSIFKYSGDV 341 (384)
Q Consensus 329 ~~~L~~L~l~~~~ 341 (384)
+++|++|++++|.
T Consensus 252 l~~L~~L~L~~n~ 264 (362)
T 3goz_A 252 LKHLQTVYLDYDI 264 (362)
T ss_dssp TTTCSEEEEEHHH
T ss_pred CCCccEEEeccCC
Confidence 8999999999997
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.91 E-value=2.4e-09 Score=96.10 Aligned_cols=200 Identities=17% Similarity=0.143 Sum_probs=129.4
Q ss_pred CCCcEEEEEeCCCCCcccCc-cccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccE
Q 016710 126 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 201 (384)
+++++|++.. .....++. .+..+++|++|+++++.+. .+. ...+++|++|+++++.+..... ..+..+++|+.
T Consensus 28 ~~l~~L~ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTT--CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCE
T ss_pred CCccEEECCC--CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccE
Confidence 4688887743 33444554 5567899999999998765 222 3368999999999988732211 22567899999
Q ss_pred EEeeeCCCCc--eeecCCCCCCceEEecccc--c--cceeeecCCceeEEEEeCcccccce-eccccCccCc----EEEe
Q 016710 202 LSLQLCPGLK--NLELSGLTKLNKFEVCDAE--E--LQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLK----YLRF 270 (384)
Q Consensus 202 L~L~~c~~~~--~~~i~~~~~L~~L~l~~~~--~--l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~L 270 (384)
|++.++.... ...+..+++|+.|+++++. . +.......++|+.|+++++...... ..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9998875432 2235677899999999885 1 2222335789999999887643322 2344455555 7888
Q ss_pred eccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceeecccCCCCcee
Q 016710 271 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVKIAASSLSIF 335 (384)
Q Consensus 271 ~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L 335 (384)
+++.++.-. .......+|+.|+++++. ++.+ ...+++|++|++++.. +...|+.++.|
T Consensus 185 s~n~l~~~~--~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~----~~c~c~~l~~l 246 (276)
T 2z62_A 185 SLNPMNFIQ--PGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP----WDCSCPRIDYL 246 (276)
T ss_dssp CSSCCCEEC--TTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC----BCCCTTTTHHH
T ss_pred CCCcccccC--ccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc----ccccCCchHHH
Confidence 888765321 112234589999999876 3222 2346899999998532 22445555544
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=2.6e-09 Score=95.36 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=87.8
Q ss_pred ccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710 147 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 225 (384)
Q Consensus 147 l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~ 225 (384)
+..+++|++|+++++.+. .+....+++|+.|+++++.+.+-.- +..+++|+.|+++++.......+.. ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 345788888888887665 3433468888888888887732211 6678888888888875332112223 5777777
Q ss_pred ecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710 226 VCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 226 l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~ 299 (384)
++++. .+.. ...+++|+.|+++++...... .+..+++|+.|+++++.+++. ..+..+++|+.|++++++
T Consensus 113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 77764 2111 114556666666665533322 355566777777766665543 345566667777766654
No 97
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.85 E-value=9.1e-10 Score=72.31 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=33.8
Q ss_pred CccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710 6 HIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH 45 (384)
Q Consensus 6 ~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~ 45 (384)
..+.++.||+||+.+||+||+.+|+++++.|||+|+++..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4566889999999999999999999999999999998643
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.84 E-value=6.1e-09 Score=92.13 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCCCcccCccccCCCCccEEEecCeeec--CCC-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
+.....+|..+. ++++.|+++++.+. .+. ...+++|++|+|+++.+.... ...+..+++|+.|++.++......
T Consensus 23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccC
Confidence 333455665443 57788888777665 121 225777888888777662211 122455677777777766433211
Q ss_pred --ecCCCCCCceEEeccccccceee----ecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHHHHhcc
Q 016710 214 --ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISK 286 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 286 (384)
.+..+++|+.|+++++. +..+. ...++|+.|+++++....... .+..+++|+.|++.++.++.-. ...+..
T Consensus 100 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~ 177 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDR 177 (251)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTT
T ss_pred hhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhC
Confidence 12345566666666653 11111 123455555554443222221 2334455555555555433211 122334
Q ss_pred CCCcceEeeccc
Q 016710 287 FPLLESLLIAGC 298 (384)
Q Consensus 287 ~p~L~~L~l~~c 298 (384)
+++|+.|+++++
T Consensus 178 l~~L~~L~l~~N 189 (251)
T 3m19_A 178 LGKLQTITLFGN 189 (251)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCCCEEEeeCC
Confidence 455555555543
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.84 E-value=8.1e-09 Score=93.49 Aligned_cols=170 Identities=21% Similarity=0.135 Sum_probs=94.3
Q ss_pred CcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-ec
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-EL 215 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-~i 215 (384)
...+|..+. ++++.|+++++.+. .+ ....+++|+.|+|+++.++.-.. ...+++|+.|+++++...... .+
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~ 96 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLG 96 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhh
Confidence 344554442 56777777776554 11 22256777777777766522110 145677777777766433111 22
Q ss_pred CCCCCCceEEecccccccee----eecCCceeEEEEeCccccccee-ccccCccCcEEEeeccccchHHHHHHhccCCCc
Q 016710 216 SGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLL 290 (384)
Q Consensus 216 ~~~~~L~~L~l~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L 290 (384)
..+++|+.|+++++. +..+ ....++|+.|+++++.....+. .+..+++|+.|+++++.++.- ....+..+++|
T Consensus 97 ~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L 174 (290)
T 1p9a_G 97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENL 174 (290)
T ss_dssp TTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTC
T ss_pred ccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCC
Confidence 345677777777664 1111 1245677777777665333222 245677788888877766531 12344567788
Q ss_pred ceEeecccccccccc---cCCCcccEEecc
Q 016710 291 ESLLIAGCDDLKSIN---ISSRSLKLLEIY 317 (384)
Q Consensus 291 ~~L~l~~c~~l~~~~---~~~~~L~~L~l~ 317 (384)
+.|+++++. +..+. ...++|++|.+.
T Consensus 175 ~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 175 DTLLLQENS-LYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCCCSEEECC
T ss_pred CEEECCCCc-CCccChhhcccccCCeEEeC
Confidence 888887754 22222 233567777776
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.84 E-value=1.7e-08 Score=93.87 Aligned_cols=209 Identities=10% Similarity=-0.008 Sum_probs=120.1
Q ss_pred CCCcEEEEEeCCCCCcccCcc-ccCCCCccEEEecCeeec--CC-Cc-cCCCCCCeE-EeeeeecChHHHHHHHcCCCCc
Q 016710 126 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SP-RS-VKLSSLTKL-FLMRVDATDLVLQSLLIGCPLI 199 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~--~~-~~-~~~~~L~~L-~L~~~~~~~~~l~~l~~~~p~L 199 (384)
.++++|+|... ....+|.. +..+++|++|+|+++.+. .+ .. ..+++|+.+ .+.++.+..-. ...+..+++|
T Consensus 30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence 46777777643 35566664 346888888888887542 22 22 256666654 34444331100 1224567888
Q ss_pred cEEEeeeCCCCceee--cCCCCCCceEEeccccccceeee-----cCCceeEEEEeCcccccceeccccCccCcEEEeec
Q 016710 200 EYLSLQLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCI-----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFAL 272 (384)
Q Consensus 200 e~L~L~~c~~~~~~~--i~~~~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 272 (384)
+.|++.++....... .....++..|++.++..+..+.. ....++.|.++++.............+|+.|.+.+
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 888888775332211 12233666777766654444332 12357777777765433333333346677777764
Q ss_pred c-ccchHHHHHHhccCCCcceEeeccccccccccc-CCCcccEEeccccccceeec--ccCCCCceeEEec
Q 016710 273 T-HIKDEWLCNQISKFPLLESLLIAGCDDLKSINI-SSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSG 339 (384)
Q Consensus 273 ~-~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~ 339 (384)
+ .++. .-...+..+++|+.|+++++. ++.+.. .+.+|++|.+.++..+..++ ...++|+.+++..
T Consensus 187 ~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 187 NNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCC-CCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCcccC-CCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 3 3321 112345677888888888764 444433 35678888887777776555 4677788877754
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=2.4e-09 Score=88.53 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCccEEEecCeeec---CCCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEe
Q 016710 151 NSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 226 (384)
Q Consensus 151 ~~L~~L~L~~~~l~---~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l 226 (384)
++|++|++++|.+. .+.. ..+++|+.|+++++.+... ..+..+++|+.|++++|.....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence 56777777776553 2222 2466666666666655221 2244455555555555432210
Q ss_pred ccccccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchHH--HHHHhccCCCcceEeecccc
Q 016710 227 CDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEW--LCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 227 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~p~L~~L~l~~c~ 299 (384)
++.....+++|+.|+++++.....+ ..+..+++|+.|++.++.++... ....+..+|+|+.|++++|.
T Consensus 87 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 87 -----LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -----CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -----HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 1111112444444444444322211 23455677777777776654321 12355667777777776664
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=2.2e-08 Score=98.93 Aligned_cols=134 Identities=18% Similarity=0.095 Sum_probs=77.9
Q ss_pred hCCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEE
Q 016710 125 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 203 (384)
Q Consensus 125 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 203 (384)
..+++.|++..+. ...+|..+ .++|++|+|+++.+. .+ ..+++|++|++++|.++. +.. + ..+|+.|+
T Consensus 58 ~~~L~~L~Ls~n~--L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLN--LSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PASLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSC--CSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEE
T ss_pred cCCccEEEeCCCC--CCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcCCCEEE
Confidence 4588888886543 34477655 378999999888776 33 457888888888887732 111 2 22788888
Q ss_pred eeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeecccc
Q 016710 204 LQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 275 (384)
Q Consensus 204 L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 275 (384)
+++|.... +.. .+++|+.|+++++. +..+....++|+.|+++++.....+. +. ++|+.|++++|.+
T Consensus 127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 127 VDNNQLTM-LPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred CCCCcCCC-CCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC
Confidence 88774332 222 45677777777664 22222234455555555544222222 22 4555555555544
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.76 E-value=3.6e-09 Score=94.42 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=99.6
Q ss_pred CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccc
Q 016710 151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA 229 (384)
Q Consensus 151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~ 229 (384)
.+++.++++++.+. .+....+++|+.|+++++.+..-. -+..+++|+.|++.+|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 34455555555443 222336899999999999873221 25678999999999885443323667889999999988
Q ss_pred c--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc-cccc
Q 016710 230 E--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINI 306 (384)
Q Consensus 230 ~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~-~~~~ 306 (384)
. .+..+.. ++|+.|+++++...... .+..+++|+.|+++++.+++- ..+..+++|+.|+++++..-. ....
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l~ 169 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGLT 169 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTST
T ss_pred ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHhc
Confidence 5 2222222 77777777776533322 356677777777777776543 235567777777777754211 1112
Q ss_pred CCCcccEEeccc
Q 016710 307 SSRSLKLLEIYD 318 (384)
Q Consensus 307 ~~~~L~~L~l~~ 318 (384)
.+++|+.|++.+
T Consensus 170 ~l~~L~~L~l~~ 181 (263)
T 1xeu_A 170 RLKKVNWIDLTG 181 (263)
T ss_dssp TCCCCCEEEEEE
T ss_pred cCCCCCEEeCCC
Confidence 345666666664
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=2e-09 Score=87.12 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=17.8
Q ss_pred CCccEEEecCeeec---CCCc-cCCCCCCeEEeeeeec
Q 016710 151 NSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVDA 184 (384)
Q Consensus 151 ~~L~~L~L~~~~l~---~~~~-~~~~~L~~L~L~~~~~ 184 (384)
++|++|++++|.+. .+.. ..+++|+.|+++++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 54 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL 54 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC
Confidence 45666666665543 2222 2455555555555544
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.72 E-value=2.2e-08 Score=88.49 Aligned_cols=168 Identities=16% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEec
Q 016710 151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVC 227 (384)
Q Consensus 151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~ 227 (384)
.+.+++++++..+. .|... .++|+.|+|+++.+..... ..+..+++|+.|+++++...... .+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45778888887665 33332 3789999999998732211 22567889999999887543211 13456677777777
Q ss_pred cccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc---
Q 016710 228 DAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI--- 304 (384)
Q Consensus 228 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--- 304 (384)
++. +..+. ...+..+++|++|+++++.++.- ....+..+++|+.|+++++. +..+
T Consensus 92 ~n~-l~~~~-------------------~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 149 (251)
T 3m19_A 92 NNQ-LASLP-------------------LGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAG 149 (251)
T ss_dssp TSC-CCCCC-------------------TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCc-ccccC-------------------hhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCc-CCccCHH
Confidence 664 11111 01123345555555555544321 11223445555555555543 1111
Q ss_pred -ccCCCcccEEeccccc--cce-eecccCCCCceeEEecccc
Q 016710 305 -NISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 305 -~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~ 342 (384)
....++|++|+++++. ++. .....+++|++|++++|++
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 1123556666665432 111 1223456666666666654
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.71 E-value=4.6e-08 Score=96.58 Aligned_cols=173 Identities=15% Similarity=0.086 Sum_probs=93.9
Q ss_pred CCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccc
Q 016710 151 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA 229 (384)
Q Consensus 151 ~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~ 229 (384)
.+|+.|+++++.+. .|... +++|++|+|+++.++. +. ..+++|+.|++++|.... +.. -..+|+.|+++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence 46777777776554 23222 4677777777776631 11 346777777777764322 111 1127777777776
Q ss_pred cccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCC
Q 016710 230 EELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSR 309 (384)
Q Consensus 230 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~ 309 (384)
. +..+....++|+.|+++++.....+. .+++|+.|++++|.++. +.. +. ++|+.|+++++. ++.+..-..
T Consensus 131 ~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~ 200 (571)
T 3cvr_A 131 Q-LTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAVPV 200 (571)
T ss_dssp C-CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCCC-
T ss_pred c-CCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhHHH
Confidence 4 11122145677777777665333221 35677777777776543 112 22 677777777654 222222112
Q ss_pred cc-------cEEeccccccceeec---ccCCCCceeEEecccc
Q 016710 310 SL-------KLLEIYDCLRLVEVK---IAASSLSIFKYSGDVI 342 (384)
Q Consensus 310 ~L-------~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~ 342 (384)
+| +.|+++++ .+..++ ..+++|++|++++|++
T Consensus 201 ~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 201 RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 55 77777654 222222 3477777777777765
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.66 E-value=3.2e-08 Score=99.04 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=95.9
Q ss_pred CCCCCCeEEeeeeecC-hHHHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEeccccccc----eeeecCCcee
Q 016710 170 KLSSLTKLFLMRVDAT-DLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAEELQ----RLCIIAQDVQ 243 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~~l~----~~~~~~p~L~ 243 (384)
.+++|+.|+++++.+. ...........+.|+.|++..+..... .....+++|+.+.+..+.... ......++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 3555555555554431 111111122344555555544422211 112234566666665543111 1111344555
Q ss_pred EEEEeCccccc-ceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccc
Q 016710 244 EVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYD 318 (384)
Q Consensus 244 ~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~ 318 (384)
.++++.+.... ....+..++.|+.|++.++..........+..+++|+.|+++++. ++.+ ...+++|++|+|++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC
Confidence 55555443211 112244567777777776654332223345667778888887764 2222 23457778887776
Q ss_pred cc--cce-eecccCCCCceeEEeccccccceEE-E-EeeccCcceeeccCCcchhhhh
Q 016710 319 CL--RLV-EVKIAASSLSIFKYSGDVISFQLGA-I-TFSKSHLLFQTENSSSEWYTEH 371 (384)
Q Consensus 319 c~--~l~-~~~~~~~~L~~L~l~~~~~~~~~~~-l-~~~~~~~~~~~~~~~~~~~~~~ 371 (384)
+. ++. .....+++|++|++++|.++..... + .+...--.+..++++..|-|..
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 42 222 1224577788888877766332211 1 1111222355566666655543
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.66 E-value=1.5e-07 Score=87.40 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=130.2
Q ss_pred CCCcccCccccCCCCccEEEecCeeec-CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceee
Q 016710 138 NPRFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE 214 (384)
Q Consensus 138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~ 214 (384)
....++|..+ .+++++|+|+++.+. .+ .. ..+++|++|+|+++.+....-...+.++++|.++.+..+..+..+.
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 3455677665 468999999998776 33 33 3799999999999976221111224567888887777666665543
Q ss_pred ---cCCCCCCceEEecccc--cccee-eecCCceeEEEEeCcc-ccccee-ccccC-ccCcEEEeeccccchHHHHHHhc
Q 016710 215 ---LSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPL-PFQCKF-NLASC-KFLKYLRFALTHIKDEWLCNQIS 285 (384)
Q Consensus 215 ---i~~~~~L~~L~l~~~~--~l~~~-~~~~p~L~~L~l~~~~-~~~~~~-~~~~~-~~L~~L~L~~~~~~~~~~~~l~~ 285 (384)
+..+++|+.|++.++. .+... .....++..+.+.+.. ...... .+..+ ..++.|+++++.++. +..-..
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f 174 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAF 174 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSS
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhc
Confidence 3567899999999885 22221 1245677888887643 211111 12333 468889999888653 222223
Q ss_pred cCCCcceEeecccccccccc----cCCCcccEEeccccccceeec-ccCCCCceeEEeccc
Q 016710 286 KFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGDV 341 (384)
Q Consensus 286 ~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~~ 341 (384)
..++|++|.+.++..++.+. ..+++|++|++++. .+..++ ....+|++|+..++.
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCT
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCC
Confidence 45789999998877666554 34589999999976 455555 346778888776653
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.63 E-value=2.1e-08 Score=85.91 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=37.8
Q ss_pred CcccCccccCCCCccEEEecCeeec-CCC-c-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCC
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 208 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~-~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 208 (384)
...+|..+ .++|++|+++++.+. .+. . ..+++|++|+++++.+..- ....+..+++|+.|++.++.
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc
Confidence 44555443 457888888877665 222 1 2577777777777765211 11123456666777666653
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.62 E-value=6.7e-08 Score=82.73 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=22.7
Q ss_pred ccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEecc
Q 016710 260 ASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIY 317 (384)
Q Consensus 260 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~ 317 (384)
..+++|+.|++.++.++.. ....+..+++|+.|++++++ +...+++|+.|.+.
T Consensus 121 ~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEW 173 (208)
T ss_dssp TTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC----BCCCTTTTHHHHHH
T ss_pred ccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC----eecCCCCHHHHHHH
Confidence 3345555555554443321 11223444555555555542 22333445544443
No 111
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=4.7e-07 Score=84.26 Aligned_cols=201 Identities=15% Similarity=0.081 Sum_probs=112.9
Q ss_pred hHHHHHHHHHhcccCCcccceeEEEEecCCCcCCCc-hhHHHHHHHH-HhCCCcEEEEEeCCCC--------CcccCccc
Q 016710 78 EIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICL-PYIDQCIFYA-LGCNVKELSLELLGNP--------RFNLPEII 147 (384)
Q Consensus 78 ~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~l~~~-~~~~l~~L~l~~~~~~--------~~~lp~~l 147 (384)
.+.+...+++..... ..++.+.+..-.. .+... ..++.+...+ ..++++.|.+...... ...+...+
T Consensus 92 ~~~~~~~~fl~~~~~--~~v~~L~lg~~~~-~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll 168 (362)
T 2ra8_A 92 EGVNLMDKILKDKKL--PSLKQITIGXWGY-EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL 168 (362)
T ss_dssp TTCCHHHHHHHCTTG--GGCSEEEECCCCS-SSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH
T ss_pred cHHHHHHHHhcCCCc--hhcceEEEccccc-CCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH
Confidence 344455556655443 4677777763221 00011 1233333211 2379999988432111 11244455
Q ss_pred cCCCCccEEEecCee-ecCCCccCCCCCCeEEeeeeecChHHHHHHHc-CCCCccEEEeeeCCC-------Cce----ee
Q 016710 148 LCSNSIEILTLAGLK-LESPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPG-------LKN----LE 214 (384)
Q Consensus 148 ~~~~~L~~L~L~~~~-l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~L~~c~~-------~~~----~~ 214 (384)
..+|+|++|.|+++. +..+. ...++|++|.|..+.++...+..+.. .+|+|+.|+|..+.. +.. +.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred hcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 678999999998873 33333 35899999999998888877777653 699999999864211 100 01
Q ss_pred cCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHh---ccCCCcc
Q 016710 215 LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLE 291 (384)
Q Consensus 215 i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~p~L~ 291 (384)
...+|+|+.|.+.+|..... ........+.+++|+.|+|+.+.+++.....+. ..+++|+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~-----------------~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNV-----------------VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHH-----------------HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred cCCCCCcCEEeCCCCCCchH-----------------HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 11234555555544421000 000011123467888888887777776544443 3467888
Q ss_pred eEeecccc
Q 016710 292 SLLIAGCD 299 (384)
Q Consensus 292 ~L~l~~c~ 299 (384)
.|++++|.
T Consensus 311 ~L~L~~n~ 318 (362)
T 2ra8_A 311 FINMKYNY 318 (362)
T ss_dssp EEECCSBB
T ss_pred EEECCCCc
Confidence 88887764
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.58 E-value=1.2e-07 Score=78.17 Aligned_cols=102 Identities=20% Similarity=0.124 Sum_probs=59.4
Q ss_pred CCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccc----ccccCCCcccEE
Q 016710 239 AQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK----SINISSRSLKLL 314 (384)
Q Consensus 239 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~----~~~~~~~~L~~L 314 (384)
.++|+.|+++++..... ..+..+++|++|+++++.++.. +...+..+++|+.|+++++..-. .....+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 45555555555543222 3355567777777777766542 23444557777777777764211 122345777777
Q ss_pred ecccccc--cee----ecccCCCCceeEEecccc
Q 016710 315 EIYDCLR--LVE----VKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 315 ~l~~c~~--l~~----~~~~~~~L~~L~l~~~~~ 342 (384)
+++++.- +.. ....+|+|++|+++++..
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7776531 112 334578888888877765
No 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=1.3e-07 Score=88.13 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=86.3
Q ss_pred HHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEecccc----ccceeee-cCCceeEEEEeCcc---ccc--c--
Q 016710 188 VLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE----ELQRLCI-IAQDVQEVSIQGPL---PFQ--C-- 255 (384)
Q Consensus 188 ~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~----~l~~~~~-~~p~L~~L~l~~~~---~~~--~-- 255 (384)
.+..++..+|+|++|.|.++.+.....+ ..++|++|.+..|. .+..+.. ..|+|++|.++... ... .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 3567788999999999998744432222 25799999998775 1112222 57999999986321 111 0
Q ss_pred ---eeccccCccCcEEEeeccccchHHHHHHh--ccCCCcceEeecccccccc-----cc---cCCCcccEEeccccc
Q 016710 256 ---KFNLASCKFLKYLRFALTHIKDEWLCNQI--SKFPLLESLLIAGCDDLKS-----IN---ISSRSLKLLEIYDCL 320 (384)
Q Consensus 256 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~--~~~p~L~~L~l~~c~~l~~-----~~---~~~~~L~~L~l~~c~ 320 (384)
.+....+|+|+.|++.++.+++.....+. ..+|+|+.|+++.+. +.. +. ..+++|+.|++++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11223589999999999888765444443 368899999998754 332 22 235789999998663
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.49 E-value=1.7e-07 Score=75.63 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=18.3
Q ss_pred CccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
+++|++|+++++.+++-.....+..+++|+.|+++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 4555555555555443222234445555555555554
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=1.3e-07 Score=78.67 Aligned_cols=130 Identities=16% Similarity=0.063 Sum_probs=62.4
Q ss_pred cCCCCccEEEecCeeec-CCCccC-CCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEE
Q 016710 148 LCSNSIEILTLAGLKLE-SPRSVK-LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 225 (384)
Q Consensus 148 ~~~~~L~~L~L~~~~l~-~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~ 225 (384)
..+++|++|+++++.+. .+.... .++|+.|+++++.+..- ..+..+++|+.|++++|... .+..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~---------- 81 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGE---------- 81 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECS----------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCc----------
Confidence 34677777777777655 222222 33666666666655221 12334455555555544221 1110
Q ss_pred eccccccceeeecCCceeEEEEeCccccccee--ccccCccCcEEEeeccccchH--HHHHHhccCCCcceEeecccc
Q 016710 226 VCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF--NLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 226 l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~p~L~~L~l~~c~ 299 (384)
.+....|+|+.|+++++.....+. .+..+++|+.|++.++.+... .....+..+|+|+.|+++++.
T Consensus 82 --------~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 --------GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp --------CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred --------chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 000123444444444443222221 344566677777766654421 112235566677777666654
No 116
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=1.3e-07 Score=78.05 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=68.6
Q ss_pred ccCccccCCCCccEEEecCeeecC---CCccCCCCCCeEEeeeeec-ChHHHHHHHcC---CCCccEEEeeeCCCCcee-
Q 016710 142 NLPEIILCSNSIEILTLAGLKLES---PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIG---CPLIEYLSLQLCPGLKNL- 213 (384)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~---~p~Le~L~L~~c~~~~~~- 213 (384)
.+|..-.....|++|++++|.+.. .....+++|++|+|++|.. ++.++..+... |+.|++|+|++|..++..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 455433334579999999987652 2223799999999999975 99999987763 788999999999877432
Q ss_pred --ecCCCCCCceEEeccccccce
Q 016710 214 --ELSGLTKLNKFEVCDAEELQR 234 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~~l~~ 234 (384)
.+..+++|++|++++|+.+..
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 344678899999998875443
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.47 E-value=3.2e-07 Score=85.58 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=78.7
Q ss_pred CcccCccccCCCCccEEEecCeeec--CCCc-c-CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE--SPRS-V-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL-- 213 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~--~~~~-~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~-- 213 (384)
...+|..+ .+.++.|+|+++.+. .+.. . .+++|+.|+|+++.+..-.- ..+..+++|+.|+|+++......
T Consensus 30 l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 30 LPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT
T ss_pred cCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCCcCCHH
Confidence 34455443 234666777666554 1221 2 56677777777666522110 12345667777777666432111
Q ss_pred ecCCCCCCceEEecccccccee----eecCCceeEEEEeCcccccceecc----ccCccCcEEEeeccccchHHHHHHhc
Q 016710 214 ELSGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQCKFNL----ASCKFLKYLRFALTHIKDEWLCNQIS 285 (384)
Q Consensus 214 ~i~~~~~L~~L~l~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~~~~l~~ 285 (384)
.+..+++|+.|+++++. +..+ ....++|+.|+++++.....+... ..+++|+.|+|+++.++.-. ...+.
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~ 184 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQ 184 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHH
T ss_pred HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhh
Confidence 13345677777776664 1111 123566777777666533322221 44677777777777655321 12233
Q ss_pred cCCC--cceEeeccc
Q 016710 286 KFPL--LESLLIAGC 298 (384)
Q Consensus 286 ~~p~--L~~L~l~~c 298 (384)
.++. |+.|++++.
T Consensus 185 ~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 185 KLPAWVKNGLYLHNN 199 (361)
T ss_dssp HSCHHHHTTEECCSS
T ss_pred hccHhhcceEEecCC
Confidence 4554 366777663
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.45 E-value=4.3e-07 Score=79.03 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=72.9
Q ss_pred CCCcccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710 138 NPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 213 (384)
Q Consensus 138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~- 213 (384)
.....+|..+ .++|++|+|+++.+. . +.. ..+++|++|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus 29 ~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 29 KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh
Confidence 3345566544 377888888887665 2 222 26788888888887762111 122456777788877776432111
Q ss_pred -ecCCCCCCceEEeccccccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcce
Q 016710 214 -ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES 292 (384)
Q Consensus 214 -~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~ 292 (384)
.+..+++|+.|.++++. ....+..+..+++|+.|++.+|.++.-. ...+..+++|+.
T Consensus 106 ~~~~~l~~L~~L~Ls~N~---------------------l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 163 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK---------------------LTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTH 163 (229)
T ss_dssp TTTTTCTTCCEEECCSSC---------------------CCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred hHhCcchhhCeEeccCCc---------------------ccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCE
Confidence 12345566666666553 2222222344555666666555543211 123445556666
Q ss_pred Eeeccc
Q 016710 293 LLIAGC 298 (384)
Q Consensus 293 L~l~~c 298 (384)
|++++.
T Consensus 164 L~l~~N 169 (229)
T 3e6j_A 164 AYLFGN 169 (229)
T ss_dssp EECTTS
T ss_pred EEeeCC
Confidence 666554
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.44 E-value=2.2e-07 Score=80.42 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCCcccCccccCCCCccEEEecCeeec-C-CC--ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 138 NPRFNLPEIILCSNSIEILTLAGLKLE-S-PR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
.....+|..+ .+.+++|+++++.+. . +. ...+++|+.|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus 21 n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 21 QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccC
Confidence 3344566544 345678888887665 2 22 225778888888777662211 112455677777777766433211
Q ss_pred --ecCCCCCCceEEecccc
Q 016710 214 --ELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~ 230 (384)
.+..+++|+.|+++++.
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp GGGGTTCSSCCEEECTTSC
T ss_pred HhHhcCCcCCCEEECCCCc
Confidence 13445566666666553
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.43 E-value=5.3e-07 Score=77.91 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=52.9
Q ss_pred CCCCcccCccccCCCCccEEEecCeeec--CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 137 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
+.....+|..+. ++|++|+++++.+. .+ ....+++|+.|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus 20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp TSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccC
Confidence 334555665543 67888888887665 22 2235788888888888763211 112456777888888776433111
Q ss_pred --ecCCCCCCceEEecccc
Q 016710 214 --ELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~~ 230 (384)
.+..+++|+.|+++++.
T Consensus 97 ~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCCCCCEEECCCCC
Confidence 12345566666666553
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.39 E-value=4.6e-07 Score=78.83 Aligned_cols=139 Identities=17% Similarity=0.100 Sum_probs=88.6
Q ss_pred ccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceee---cCCCCCCceEEecc
Q 016710 153 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKFEVCD 228 (384)
Q Consensus 153 L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~---i~~~~~L~~L~l~~ 228 (384)
.+.++.++..+. .|.. -.++|++|+|+++.+.... ...+..+++|+.|+|.++... .+. +..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 456666665554 3332 2488999999998873211 122556788888888887532 211 23345555555554
Q ss_pred ccccceeeecCCceeEEEEeCcccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc---
Q 016710 229 AEELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI--- 304 (384)
Q Consensus 229 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~--- 304 (384)
+ ...... ..+..+++|+.|+++++.++. +...+..+++|+.|+++++. +..+
T Consensus 98 N---------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~~ 153 (229)
T 3e6j_A 98 N---------------------QLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPHG 153 (229)
T ss_dssp S---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCTT
T ss_pred C---------------------cCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCHH
Confidence 4 322111 124678999999999998762 33445789999999999875 3222
Q ss_pred -ccCCCcccEEeccc
Q 016710 305 -NISSRSLKLLEIYD 318 (384)
Q Consensus 305 -~~~~~~L~~L~l~~ 318 (384)
...+++|++|.+.+
T Consensus 154 ~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTTTCTTCCEEECTT
T ss_pred HHhCCCCCCEEEeeC
Confidence 23458999999985
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=2.5e-07 Score=76.94 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=80.5
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEe
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 204 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L 204 (384)
.++++|++..+. ...+|......++|++|+++++.+. .+....+++|++|+++++.+..-. ..++..+|+|+.|++
T Consensus 19 ~~L~~L~l~~n~--l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYK--IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSC--CCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCC--CchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEEC
Confidence 467787775433 3455543333459999999998776 333447999999999999883211 122456899999999
Q ss_pred eeCCCCcee---ecCCCCCCceEEeccccccceeeecCCceeEEEEeCccccccee----ccccCccCcEEEeeccccch
Q 016710 205 QLCPGLKNL---ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF----NLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 205 ~~c~~~~~~---~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~ 277 (384)
+++...... .+..+++|+.|++.++ .....+. .+..+++|+.|++..+....
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N---------------------~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRN---------------------PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSS---------------------GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCC---------------------CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 987532111 1233445555555544 3211111 25568899999998876544
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=1e-07 Score=89.25 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=22.3
Q ss_pred ccCccCcEEEeeccccchHHHH---HHhccCCCcceEeecccc
Q 016710 260 ASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCD 299 (384)
Q Consensus 260 ~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~ 299 (384)
...++|+.|+|++|.+++.... ..+..+++|+.|+++++.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3445666666666666654332 233345666666666654
No 124
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=8.7e-07 Score=73.12 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=58.2
Q ss_pred CceeEEEEeCccccc-ceeccccCccCcEEEeeccc-cchHHHHHHhcc---CCCcceEeecccccccccc----cCCCc
Q 016710 240 QDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH-IKDEWLCNQISK---FPLLESLLIAGCDDLKSIN----ISSRS 310 (384)
Q Consensus 240 p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~---~p~L~~L~l~~c~~l~~~~----~~~~~ 310 (384)
.+|++|+++++.... ....+.+|++|++|+|.+|. ++|..+..+... +++|++|+|++|..++..+ ..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666655222 11235678888888888886 777777766652 5688888888888775422 24688
Q ss_pred ccEEecccccccee
Q 016710 311 LKLLEIYDCLRLVE 324 (384)
Q Consensus 311 L~~L~l~~c~~l~~ 324 (384)
|++|+|.+|..+.+
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888877663
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.33 E-value=1.2e-06 Score=75.71 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=56.7
Q ss_pred CCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEecccc--ccce-eeecCCceeEEE
Q 016710 172 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVS 246 (384)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~--~l~~-~~~~~p~L~~L~ 246 (384)
+.++.|+|+++.+........+..+++|+.|++.++...... .+..+++|+.|+++++. .+.. .....++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 345556665555422111112344555666666555322111 13344556666665553 1111 011345556666
Q ss_pred EeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 247 IQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 247 l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
++++..... +..+..+++|+.|+|.++.++.-. ...+..+++|+.|++++.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence 555542222 122444556666666555543211 223344556666666554
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.33 E-value=4.9e-08 Score=83.00 Aligned_cols=106 Identities=20% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCCCCCceEEeccccccceeeecCCceeEEEEeC
Q 016710 170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG 249 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~ 249 (384)
.+++|++|+++++.+.. +. .+..+++|+.|++.+|... . ++......|+|+.|++++
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~------~--------------l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK------K--------------IENLDAVADTLEELWISY 102 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC------S--------------CSSHHHHHHHCSEEEEEE
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc------c--------------ccchhhcCCcCCEEECcC
Confidence 56777777777776622 11 2344566666666665211 0 111111234555555555
Q ss_pred cccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710 250 PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~ 299 (384)
+.....+ .+..+++|+.|++.++.++.-.....+..+++|+.|++++++
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 4432222 344566777777777666543323445567777777776654
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=3.5e-08 Score=83.85 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=78.0
Q ss_pred CcccCccccCCCCccEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCceeecCCC
Q 016710 140 RFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGL 218 (384)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~~i~~~ 218 (384)
...+|..+..+++|++|+++++.+. .+....+++|+.|+++++.+.. +...+..+|+|+.|++++|.......+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~-- 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIE-- 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHHHHH--
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCCccc--
Confidence 3445556667888888888887765 4433367888888888887731 2223344577888888776322110111
Q ss_pred CCCceEEeccccccceeeecCCceeEEEEeCcccccce--eccccCccCcEEEeeccccchH---------HHHHHhccC
Q 016710 219 TKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDE---------WLCNQISKF 287 (384)
Q Consensus 219 ~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~---------~~~~l~~~~ 287 (384)
..++|+.|+++++...... ..+..+++|++|++.++.+... .....+..+
T Consensus 113 -------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 113 -------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp -------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred -------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 2334444444443322111 1355678888888888765432 123456778
Q ss_pred CCcceEee
Q 016710 288 PLLESLLI 295 (384)
Q Consensus 288 p~L~~L~l 295 (384)
|+|+.|+-
T Consensus 174 ~~L~~Ld~ 181 (198)
T 1ds9_A 174 PNLKKLDG 181 (198)
T ss_dssp SSCSEECC
T ss_pred CCcEEECC
Confidence 88888873
No 128
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.28 E-value=7.3e-07 Score=89.10 Aligned_cols=210 Identities=15% Similarity=0.075 Sum_probs=134.3
Q ss_pred CCCcEEEEEeCCCCCcccCccccCCCCccEEEecCeeec----CC-CccCCCCCCeEEeeeeecChHHHHHHHcCCCCcc
Q 016710 126 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE----SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE 200 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~----~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 200 (384)
..++.+++.... ....+ ....+++|+.|.++.+.+. .+ ....+.+|+.|++..+.... .......++.|+
T Consensus 349 ~~L~~l~l~~n~--~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~ 423 (635)
T 4g8a_A 349 KSLKRLTFTSNK--GGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLE 423 (635)
T ss_dssp TTCCEEEEESCC--SCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCC
T ss_pred hhhhhccccccc--CCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc--cccccccccccc
Confidence 467777765422 11112 2235789999999886554 12 12267899999988776511 111245688899
Q ss_pred EEEeeeCCCCce---eecCCCCCCceEEeccccc---cceeeecCCceeEEEEeCccccc--ceeccccCccCcEEEeec
Q 016710 201 YLSLQLCPGLKN---LELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFAL 272 (384)
Q Consensus 201 ~L~L~~c~~~~~---~~i~~~~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~ 272 (384)
.+.+..+..... .....+++++.++++.+.. ........++++.|+++++.... .+-.+..+++|+.|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 999876543321 1234567888888887751 11222356789999998865221 233467789999999999
Q ss_pred cccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEecccccc--ce-eecccC-CCCceeEEecccc
Q 016710 273 THIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLR--LV-EVKIAA-SSLSIFKYSGDVI 342 (384)
Q Consensus 273 ~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~--l~-~~~~~~-~~L~~L~l~~~~~ 342 (384)
|.++.- ....+.++++|+.|+++++. +..+ ...+++|++|+++++.- +. .....+ ++|++|++++|+.
T Consensus 504 N~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 504 CQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp SCCCEE-CTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CccCCc-ChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 886642 13456788999999999875 2222 23568999999986532 21 222344 6899999999886
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.28 E-value=9.1e-07 Score=76.42 Aligned_cols=141 Identities=12% Similarity=0.060 Sum_probs=76.7
Q ss_pred cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc
Q 016710 154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~ 230 (384)
+.++.++..+. .|... .++|+.|+++++.+..-. ...+..+++|+.|+|.++..... ..+..+++|+.|+++++.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45666665544 33322 378999999998873211 11245688899999988754322 134456778888887764
Q ss_pred ccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccc
Q 016710 231 ELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 298 (384)
Q Consensus 231 ~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c 298 (384)
+..+. ...++|+.|+++++..... +..+..+++|+.|+|.++.++.-. ...+..+++|+.|++++.
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred -CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence 21111 1345566666655543222 122444556666666555543211 122344555555555553
No 130
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=7.9e-07 Score=83.22 Aligned_cols=129 Identities=21% Similarity=0.120 Sum_probs=64.9
Q ss_pred CCCCCeEEeeeeecChHHHHH---HHc-CCCCccEEEeeeCCCCce-e-ec-CCCCCCceEEeccccc----cceee---
Q 016710 171 LSSLTKLFLMRVDATDLVLQS---LLI-GCPLIEYLSLQLCPGLKN-L-EL-SGLTKLNKFEVCDAEE----LQRLC--- 236 (384)
Q Consensus 171 ~~~L~~L~L~~~~~~~~~l~~---l~~-~~p~Le~L~L~~c~~~~~-~-~i-~~~~~L~~L~l~~~~~----l~~~~--- 236 (384)
.++|+.|+|++|.++...... .+. .++.|++|+|++|..... . .+ ..+++|+.|++++|.- ...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567888888888875544333 333 346888999888753211 0 11 1234677777776640 01110
Q ss_pred -ecCCceeEEEEeCccccc-----ceeccccCccCcEEEeeccccchHHHH---HHhccCCCcceEeecccc
Q 016710 237 -IIAQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCD 299 (384)
Q Consensus 237 -~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~ 299 (384)
...++|++|+++++.... ....+..+++|++|+|++|.+++.... ..+...++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 123455555555544211 001123345555555555555543322 223444555555555543
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.04 E-value=5.2e-06 Score=77.32 Aligned_cols=142 Identities=16% Similarity=0.064 Sum_probs=93.0
Q ss_pred cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHc-CCCCccEEEeeeCCCCcee--ecCCCCCCceEEeccc
Q 016710 154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDA 229 (384)
Q Consensus 154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~ 229 (384)
+.+++++..+. .|.. -.+.++.|+|+++.++.-... .+. .+++|+.|+|.++...... .+..+++|+.|+++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56777776555 3322 346799999999988432211 133 7899999999988543221 2456789999999988
Q ss_pred cccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccchHHHHHHh---ccCCCcceEeecccc
Q 016710 230 EELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLESLLIAGCD 299 (384)
Q Consensus 230 ~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~p~L~~L~l~~c~ 299 (384)
. +..+. ...++|+.|+++++..... ...+..+++|+.|+|+++.++.-. ...+ ..+++|+.|+++++.
T Consensus 99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSC
T ss_pred c-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCC
Confidence 5 33322 2467888998888764332 234667888999998888765421 1122 457888888888764
No 132
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.01 E-value=1.5e-06 Score=77.48 Aligned_cols=38 Identities=34% Similarity=0.646 Sum_probs=34.4
Q ss_pred cccCCCCHHHHHHHhcCCCcccee-ehhhhhhhhhhhhc
Q 016710 8 DRISNLPEPILHHILSFLPFTQTV-QTRVLSRTWKRAWH 45 (384)
Q Consensus 8 d~is~LPdeil~~I~s~L~~~~~~-~~~~vskrW~~lw~ 45 (384)
..+..||+||+.+||+|||.++++ ++++|||+|+.+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 357789999999999999999999 99999999998643
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=7.2e-06 Score=81.04 Aligned_cols=55 Identities=24% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEeccc
Q 016710 172 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDA 229 (384)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~ 229 (384)
..|+.|+|+++.++. +.. +..+++|+.|++++|..... ..+..+++|+.|+++++
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 357778888777632 122 56677788888877643311 12334455566655554
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.91 E-value=1.4e-06 Score=88.88 Aligned_cols=106 Identities=9% Similarity=0.055 Sum_probs=56.0
Q ss_pred CCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEecccc--ccceeeecCCceeEEE
Q 016710 170 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVS 246 (384)
Q Consensus 170 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~ 246 (384)
.+++|+.|+|+++.+.. +..-+..++.|+.|+|++|..... ..+..+++|+.|+++++. .++.-...+++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 45556666666555421 111122455666666655532210 012344566666666554 1111112456677777
Q ss_pred EeCcccccceeccccCccCcEEEeeccccch
Q 016710 247 IQGPLPFQCKFNLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 247 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 277 (384)
++++.....+..+..+++|+.|+|++|.++.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 7666544444456778888888888887664
No 135
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.88 E-value=1.5e-06 Score=76.72 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=32.0
Q ss_pred ccCCCCHHHHHHHhcCCCccceeehhhhhhhhhh
Q 016710 9 RISNLPEPILHHILSFLPFTQTVQTRVLSRTWKR 42 (384)
Q Consensus 9 ~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~ 42 (384)
.|+.||+||+++||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999996
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=2.4e-05 Score=71.74 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=41.2
Q ss_pred CccCcEEEeeccccchHHHHHHhccCCCcceEeecccccccccc----cCCCccc-EEeccccccceeec----ccCCCC
Q 016710 262 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLK-LLEIYDCLRLVEVK----IAASSL 332 (384)
Q Consensus 262 ~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~-~L~l~~c~~l~~~~----~~~~~L 332 (384)
|++|+.+++.++.++.- -...+.+|++|+.+++.+. ++.+. ..|++|+ .+.+.+ ++..+. .+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 56677777665543311 1223556667777776552 33332 2446676 676665 333222 457777
Q ss_pred ceeEEecccc
Q 016710 333 SIFKYSGDVI 342 (384)
Q Consensus 333 ~~L~l~~~~~ 342 (384)
+++++.++.+
T Consensus 300 ~~l~l~~n~i 309 (329)
T 3sb4_A 300 RYVLATGDKI 309 (329)
T ss_dssp EEEEECSSCC
T ss_pred CEEEeCCCcc
Confidence 7777766543
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.85 E-value=0.00014 Score=68.53 Aligned_cols=203 Identities=12% Similarity=0.134 Sum_probs=115.1
Q ss_pred CCcEEEEEeCCCCCcccCccccCCCCccEEEecCe--eecCCCccCCCCCCeEEeeeeec---ChHHHHHHHcCCCCccE
Q 016710 127 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGL--KLESPRSVKLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEY 201 (384)
Q Consensus 127 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~ 201 (384)
+++.+.+. .....++...+.-.+|+.+.+... .+.......|++|+.+++..+.+ ....+ . |..|+.
T Consensus 136 ~L~~i~l~---~~i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF----~-~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLN---EGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF----V-YAGIEE 207 (401)
T ss_dssp CCSEEECC---TTCCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT----T-TCCCSE
T ss_pred CccEEEeC---CCccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE----e-ecccCE
Confidence 45555542 113344444443345777777652 12122222578888888875544 22222 1 567888
Q ss_pred EEeeeCCCCcee---ecCCCCCCceEEecccc-ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccch
Q 016710 202 LSLQLCPGLKNL---ELSGLTKLNKFEVCDAE-ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 202 L~L~~c~~~~~~---~i~~~~~L~~L~l~~~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 277 (384)
+.+... ++.+ ...+|++|+.+.+...- .+..-.....+|+.+.+......-..-.+..|++|+.+.+.++....
T Consensus 208 l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 208 VLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred EEeCCc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 877632 3322 23457788888886531 22222223367888888543321112246778999999997654321
Q ss_pred H----HHHHHhccCCCcceEeecccccccccc----cCCCcccEEecccc-ccce-eecccCCCCceeEEecccc
Q 016710 278 E----WLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASSLSIFKYSGDVI 342 (384)
Q Consensus 278 ~----~~~~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c-~~l~-~~~~~~~~L~~L~l~~~~~ 342 (384)
. .-...+.+|++|+.+.+.. .++.+. ..|.+|+.+.|.+. ..+. ....+| +|+++.+.++..
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 0 1123567899999999874 244333 35688999999643 2222 223568 999999988764
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=1.7e-05 Score=78.35 Aligned_cols=186 Identities=12% Similarity=0.028 Sum_probs=115.8
Q ss_pred cCCCCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeec------------ChHHHHHHHcCCCCccEEE-eeeCCC--C
Q 016710 148 LCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDA------------TDLVLQSLLIGCPLIEYLS-LQLCPG--L 210 (384)
Q Consensus 148 ~~~~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~------------~~~~l~~l~~~~p~Le~L~-L~~c~~--~ 210 (384)
..+++|+.|+|+++.+. .|... .+++|+.|+++++.. ........+..+++|+.|+ +..... +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34677777777776554 33322 577777777755431 0112223345567777776 332210 0
Q ss_pred cee-----ecC--CCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHH
Q 016710 211 KNL-----ELS--GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 281 (384)
Q Consensus 211 ~~~-----~i~--~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 281 (384)
... .+. ....|+.|+++++. .++. ....++|+.|+++++.....+..++.+++|+.|+|++|.++. +.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 000 011 11368888888875 3333 235678999999988765555678889999999999998775 22
Q ss_pred HHhccCCCcceEeecccccc----cccccCCCcccEEeccccc--cce----eecccCCCCceeEE
Q 016710 282 NQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCL--RLV----EVKIAASSLSIFKY 337 (384)
Q Consensus 282 ~l~~~~p~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~c~--~l~----~~~~~~~~L~~L~l 337 (384)
.+..+++|+.|+++++..- ......+++|++|+++++. ++. .+...+|+|+.|++
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5778999999999987522 1223356899999998653 121 12234899998853
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.82 E-value=2.1e-05 Score=66.23 Aligned_cols=68 Identities=24% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCCcccCccccCCCCccEEEecCeeec-CC-C--ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCC
Q 016710 138 NPRFNLPEIILCSNSIEILTLAGLKLE-SP-R--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 208 (384)
Q Consensus 138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~~-~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 208 (384)
.....+|..+. ++|++|+++++.+. .+ . ...+++|++|+|+++.+.... ...+..+++|+.|+++++.
T Consensus 18 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK 89 (192)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCc
Confidence 33455665443 37777777777655 22 1 225777777777777662211 1123455666666666653
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.78 E-value=3.4e-05 Score=63.82 Aligned_cols=56 Identities=29% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCccEEEecCeeec-CC-Cc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeC
Q 016710 151 NSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC 207 (384)
Q Consensus 151 ~~L~~L~L~~~~l~-~~-~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c 207 (384)
++|++|+++++.+. .+ .. ..+++|++|+++++.+..-. ...+..+++|+.|++.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCC
Confidence 46666666665544 11 11 24556666666655542100 011234445555555444
No 141
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.74 E-value=4.3e-06 Score=80.04 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=37.5
Q ss_pred CCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhhhc
Q 016710 4 LSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWH 45 (384)
Q Consensus 4 ~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~lw~ 45 (384)
.-..|.|+.||+||+.+||+|||.++++++++|||+|+++..
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 345688999999999999999999999999999999987543
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.74 E-value=5.3e-05 Score=63.65 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=78.5
Q ss_pred cEEEecCeeec-CCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCce--eecCCCCCCceEEecccc
Q 016710 154 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 154 ~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~--~~i~~~~~L~~L~l~~~~ 230 (384)
+.++++++.+. .|.. -.++|++|+++++.+........+..+++|+.|+++++..... ..+..+++|+.|+++++.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 66777776554 3322 2448888888888773221112356688888888888754322 134467788888888875
Q ss_pred ccceee----ecCCceeEEEEeCcccccc-eeccccCccCcEEEeeccccc
Q 016710 231 ELQRLC----IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIK 276 (384)
Q Consensus 231 ~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~ 276 (384)
+..+. ...++|+.|+++++..... +..+..+++|++|++.++.+.
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 22221 2467888888888764332 334667889999999888765
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.73 E-value=4.8e-05 Score=64.06 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=15.6
Q ss_pred CCccEEEecCeeec-CCCcc-CCCCCCeEEeeeeec
Q 016710 151 NSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDA 184 (384)
Q Consensus 151 ~~L~~L~L~~~~l~-~~~~~-~~~~L~~L~L~~~~~ 184 (384)
++|++|+++++.+. .+... .+++|+.|+|+++.+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC
Confidence 45555555554443 22111 345555555555444
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=8.9e-05 Score=62.37 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=64.3
Q ss_pred CceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEe
Q 016710 240 QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLE 315 (384)
Q Consensus 240 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~ 315 (384)
++|++|+++++.....+..+..+++|+.|+++++.++.-. ...+.++++|+.|+++++. +..+ ....++|++|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence 4666677666654433445667788888888887765321 2345677888888888765 2222 22457888888
Q ss_pred ccccccceee----cccCCCCceeEEecccc
Q 016710 316 IYDCLRLVEV----KIAASSLSIFKYSGDVI 342 (384)
Q Consensus 316 l~~c~~l~~~----~~~~~~L~~L~l~~~~~ 342 (384)
+.+.. +..+ ...+++|++|++++|++
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 88642 2222 34578888888888875
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.69 E-value=1.4e-05 Score=81.45 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHHcCCCCccEEEeeeCCCCce-eecCCCCCCceEEecccc--ccceeeecCCceeEEEEeCcccccceeccccCccCcE
Q 016710 191 SLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKY 267 (384)
Q Consensus 191 ~l~~~~p~Le~L~L~~c~~~~~-~~i~~~~~L~~L~l~~~~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~ 267 (384)
..+..++.|+.|+|+++..... ..+..+++|+.|+++++. .++.-....++|+.|+++++.....+..+..+++|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 3456789999999998864421 123357899999999885 2222223678999999998876555666788899999
Q ss_pred EEeeccccchHHHHHHhccCCCcceEeecccc
Q 016710 268 LRFALTHIKDEWLCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 268 L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~ 299 (384)
|+|.+|.++. +...+..+++|+.|+|+++.
T Consensus 298 L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 298 FYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EECCSSCCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred EECCCCCCCc--cChhhhcCCCccEEeCCCCc
Confidence 9999887752 33346788999999999876
No 146
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.59 E-value=9.5e-06 Score=77.17 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=37.9
Q ss_pred CCCCCccccCCCCHH----HHHHHhcCCCccceeehhhhhhhhhhh
Q 016710 2 ESLSHIDRISNLPEP----ILHHILSFLPFTQTVQTRVLSRTWKRA 43 (384)
Q Consensus 2 ~~~~~~d~is~LPde----il~~I~s~L~~~~~~~~~~vskrW~~l 43 (384)
+.+-..|.|+.||+| |+.+||+||+.++++++++|||+|+++
T Consensus 3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 445567999999999 999999999999999999999999953
No 147
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.57 E-value=1.8e-05 Score=75.44 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCCCccccCCCCHHHHHHHhcCCCccceeehhhhhhhhhhh
Q 016710 3 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA 43 (384)
Q Consensus 3 ~~~~~d~is~LPdeil~~I~s~L~~~~~~~~~~vskrW~~l 43 (384)
..-..|.++.||+|++.+||+||+.++++++++|||+|+++
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 44567899999999999999999999999999999999864
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.55 E-value=0.00012 Score=60.35 Aligned_cols=123 Identities=16% Similarity=0.013 Sum_probs=72.3
Q ss_pred ccEEEecCeeecCCCccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee--ecCCCCCCceEEecccc
Q 016710 153 IEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 153 L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~--~i~~~~~L~~L~l~~~~ 230 (384)
.+.++++++.+........++|+.|+++++.+..- ....+..+++|+.|++.++...... .+..+++|+.|+++++.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 35566655544411122346788888887776321 1122456778888888776433211 13456788888888774
Q ss_pred ccceee----ecCCceeEEEEeCcccccceec-cccCccCcEEEeeccccch
Q 016710 231 ELQRLC----IIAQDVQEVSIQGPLPFQCKFN-LASCKFLKYLRFALTHIKD 277 (384)
Q Consensus 231 ~l~~~~----~~~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~ 277 (384)
+..+. ...++|++|+++++.....+.. +..+++|++|++.++.+..
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 -LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 22211 2457788888877664333322 4567888999988887653
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=0.00016 Score=66.21 Aligned_cols=95 Identities=11% Similarity=0.137 Sum_probs=59.5
Q ss_pred CCCCceEEecccc--ccceee-ecCCceeEEEEeCcccccceeccccCccCc-EEEeeccccchHHHHHHhccCCCcceE
Q 016710 218 LTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESL 293 (384)
Q Consensus 218 ~~~L~~L~l~~~~--~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~p~L~~L 293 (384)
+++|+.+++.++. .++.-. ..+++|+++.+......-..-.+.+|++|+ .+.+.. .++.- -...+.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCEE
Confidence 6789999998753 222222 257789999887753211122467889999 999876 22210 12356789999999
Q ss_pred eecccccccc----cccCCCcccEEe
Q 016710 294 LIAGCDDLKS----INISSRSLKLLE 315 (384)
Q Consensus 294 ~l~~c~~l~~----~~~~~~~L~~L~ 315 (384)
++++.. ++. ....+++|+.+.
T Consensus 303 ~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EeCCCc-cCccchhhhcCCcchhhhc
Confidence 986533 322 334567888774
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=0.00018 Score=60.05 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=24.7
Q ss_pred cccCccCcEEEe--eccccchHH---HHHHhccCCCcceEeecccc
Q 016710 259 LASCKFLKYLRF--ALTHIKDEW---LCNQISKFPLLESLLIAGCD 299 (384)
Q Consensus 259 ~~~~~~L~~L~L--~~~~~~~~~---~~~l~~~~p~L~~L~l~~c~ 299 (384)
+...++|++|+| .++.+++.. +...+...+.|++|+++++.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 344566777777 666666654 33344555677777776654
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.24 E-value=0.00045 Score=56.66 Aligned_cols=90 Identities=20% Similarity=0.168 Sum_probs=50.5
Q ss_pred CCCCcccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee
Q 016710 137 GNPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 213 (384)
Q Consensus 137 ~~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~ 213 (384)
+.....+|..+ .++|+.|+|+++.+. . +.. ..+++|++|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus 18 ~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 18 GKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp TSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeC
Confidence 33445566554 377888888887665 2 222 25778888888887762111 122356677777777776432111
Q ss_pred --ecCCCCCCceEEeccc
Q 016710 214 --ELSGLTKLNKFEVCDA 229 (384)
Q Consensus 214 --~i~~~~~L~~L~l~~~ 229 (384)
.+..+++|+.|++.+.
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEEeCCC
Confidence 1233455555555544
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.22 E-value=0.00053 Score=56.50 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCCcccCccccCCCCccEEEecCeeec-C-CCc-cCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710 138 NPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 213 (384)
Q Consensus 138 ~~~~~lp~~l~~~~~L~~L~L~~~~l~-~-~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~- 213 (384)
.....+|..+. ++|++|+|+++.+. . +.. ..+++|+.|+|+++.+..-. ...+..+++|+.|+|+++......
T Consensus 22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~ 98 (174)
T 2r9u_A 22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPR 98 (174)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCH
Confidence 33456666543 77888888887665 2 222 26788888888887762210 112355677777777766432111
Q ss_pred -ecCCCCCCceEEeccc
Q 016710 214 -ELSGLTKLNKFEVCDA 229 (384)
Q Consensus 214 -~i~~~~~L~~L~l~~~ 229 (384)
.+..+++|+.|++.+.
T Consensus 99 ~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTCTTCSEEECCSS
T ss_pred HHhccccCCCEEEeCCC
Confidence 1233455555555544
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.13 E-value=0.003 Score=59.40 Aligned_cols=197 Identities=10% Similarity=0.146 Sum_probs=122.4
Q ss_pred CCCcEEEEEeCCCCCcccCcccc-CCCCccEEEecCeeec--CCCccCCCCCCeEEeeeeec--ChHHHHHHHcCCCCcc
Q 016710 126 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIE 200 (384)
Q Consensus 126 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le 200 (384)
.+++++.+.. ....++...+ .|++|+.+++..+.+. ......+.+|+.+.+..... .. ..+..|++|+
T Consensus 157 ~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLK 229 (401)
T ss_dssp CCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCC
T ss_pred CCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCC
Confidence 4677777632 2445554444 6999999999876554 33344578999999875421 22 2256799999
Q ss_pred EEEeeeCCCCceee---cCCCCCCceEEeccccccceee----ecCCceeEEEEeCcccc------cceeccccCccCcE
Q 016710 201 YLSLQLCPGLKNLE---LSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPF------QCKFNLASCKFLKY 267 (384)
Q Consensus 201 ~L~L~~c~~~~~~~---i~~~~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~ 267 (384)
.+.+... +..+. ..+ .+|+.+.+... +..+. ..|++|+.+.+.+.... -..-.+.+|++|+.
T Consensus 230 ~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 230 TIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred EEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 9999753 33222 234 48999988543 32322 26889999999775532 11224678999999
Q ss_pred EEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccccceee----cccC-CCCceeEEe
Q 016710 268 LRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEV----KIAA-SSLSIFKYS 338 (384)
Q Consensus 268 L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~~l~~~----~~~~-~~L~~L~l~ 338 (384)
+.+... +..- -...+.+|++|+.+.+... ++.+ ...| +|+.+.+.+.. +..+ ..++ .++++|.+-
T Consensus 305 l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 305 FEIPES-IRIL-GQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECCCTT-CCEE-CTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEEC
T ss_pred EEeCCc-eEEE-hhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeC
Confidence 999743 2110 1234678999999999542 3333 2356 89999998642 2222 1334 356666665
Q ss_pred cc
Q 016710 339 GD 340 (384)
Q Consensus 339 ~~ 340 (384)
.+
T Consensus 379 ~~ 380 (401)
T 4fdw_A 379 AE 380 (401)
T ss_dssp GG
T ss_pred HH
Confidence 44
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.95 E-value=0.0012 Score=54.14 Aligned_cols=15 Identities=13% Similarity=-0.030 Sum_probs=8.6
Q ss_pred cCCCCceeEEecccc
Q 016710 328 AASSLSIFKYSGDVI 342 (384)
Q Consensus 328 ~~~~L~~L~l~~~~~ 342 (384)
.+++|++|++++|++
T Consensus 100 ~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 100 NLKSLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCCCCCEEEeCCCCC
Confidence 455666666666544
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.89 E-value=0.0016 Score=53.56 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=32.6
Q ss_pred ccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccc----ccCCCcccEEeccccc--cce-eecccCCCCcee
Q 016710 263 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCL--RLV-EVKIAASSLSIF 335 (384)
Q Consensus 263 ~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L 335 (384)
++|+.|+++++.++.- ....+..+++|+.|+++++. +..+ ....++|++|++++.. .+. .....+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 4444454444443321 01223344555555555432 2111 1223455555555321 111 112345666666
Q ss_pred EEecccc
Q 016710 336 KYSGDVI 342 (384)
Q Consensus 336 ~l~~~~~ 342 (384)
++++|++
T Consensus 111 ~L~~N~~ 117 (174)
T 2r9u_A 111 YLYNNPW 117 (174)
T ss_dssp ECCSSCB
T ss_pred EeCCCCc
Confidence 6666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.77 E-value=0.0011 Score=55.28 Aligned_cols=85 Identities=16% Similarity=0.028 Sum_probs=47.9
Q ss_pred ccCccCcEEEeeccccchHHHH---HHhccCCCcceEeeccccccc-------ccccCCCcccEEec--cccc-c-----
Q 016710 260 ASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDLK-------SINISSRSLKLLEI--YDCL-R----- 321 (384)
Q Consensus 260 ~~~~~L~~L~L~~~~~~~~~~~---~l~~~~p~L~~L~l~~c~~l~-------~~~~~~~~L~~L~l--~~c~-~----- 321 (384)
...++|++|+|+++.+++.... ..+...++|++|+++++..-. ......++|++|+| .++. +
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3456677777777776665433 334445677777777665221 11123356777777 3221 1
Q ss_pred -ceeecccCCCCceeEEecccccc
Q 016710 322 -LVEVKIAASSLSIFKYSGDVISF 344 (384)
Q Consensus 322 -l~~~~~~~~~L~~L~l~~~~~~~ 344 (384)
+.+.....++|++|++++|.+..
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCCh
Confidence 11233456788888888877643
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.04 E-value=0.035 Score=51.82 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=36.3
Q ss_pred ccCccCcEEEeeccc--cchHHHHHHhccCCCcceEeecccccccccc----cCCCcccEEecccc-ccce-eecccCCC
Q 016710 260 ASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASS 331 (384)
Q Consensus 260 ~~~~~L~~L~L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~c-~~l~-~~~~~~~~ 331 (384)
..|.+|+.+.+..+- +.+ ..+.+|.+|+.+++.. .++.++ ..|.+|+.+.+... ..+. ..-.+|++
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCIN 367 (394)
T ss_dssp TTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTT
T ss_pred cccccccccccccccceech----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCC
Confidence 345666666653321 111 1245566666666632 122222 24566777666432 1122 11245777
Q ss_pred CceeEEecc
Q 016710 332 LSIFKYSGD 340 (384)
Q Consensus 332 L~~L~l~~~ 340 (384)
|+++.+..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 777776543
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.91 E-value=0.009 Score=54.69 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCcccCccccCCCCccEEEecC-eeec-CC-C-ccCCCCCCeEEeeeeecChHHHHHHHcCCCCccEEEeeeCCCCcee-
Q 016710 139 PRFNLPEIILCSNSIEILTLAG-LKLE-SP-R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 213 (384)
Q Consensus 139 ~~~~lp~~l~~~~~L~~L~L~~-~~l~-~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~~~~~- 213 (384)
....+|. +..+++|++|+|++ +.+. .+ . ...+++|+.|+|+++.+..-. ...+..+++|+.|+|+++.-....
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH
Confidence 3455777 66677788888875 6555 22 2 225777888888777762211 122456777888887776432111
Q ss_pred -ecCCCCCCceEEecccc
Q 016710 214 -ELSGLTKLNKFEVCDAE 230 (384)
Q Consensus 214 -~i~~~~~L~~L~l~~~~ 230 (384)
.+..+ .|+.|.+.+..
T Consensus 98 ~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp TTTCSC-CCCEEECCSSC
T ss_pred HHcccC-CceEEEeeCCC
Confidence 11222 37777776543
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.31 E-value=0.022 Score=51.99 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=42.8
Q ss_pred cCCceeEEEEeC-cccccce-eccccCccCcEEEeeccccchHHHHHHhccCCCcceEeeccccccccccc---CCCccc
Q 016710 238 IAQDVQEVSIQG-PLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI---SSRSLK 312 (384)
Q Consensus 238 ~~p~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~---~~~~L~ 312 (384)
..++|+.|++++ +...... -.+..+++|+.|+|++|.++.- ....+.++++|+.|+|+++. +..+.. ....|+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCce
Confidence 345677777765 4433322 2356677777777777765432 12345567777777777654 222211 112366
Q ss_pred EEecc
Q 016710 313 LLEIY 317 (384)
Q Consensus 313 ~L~l~ 317 (384)
.|.|.
T Consensus 107 ~l~l~ 111 (347)
T 2ifg_A 107 ELVLS 111 (347)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 66665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.20 E-value=0.018 Score=50.74 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=21.9
Q ss_pred cCcEEEeeccccch------HHHHHHhccCCCcceEee
Q 016710 264 FLKYLRFALTHIKD------EWLCNQISKFPLLESLLI 295 (384)
Q Consensus 264 ~L~~L~L~~~~~~~------~~~~~l~~~~p~L~~L~l 295 (384)
+|++|.|.+|.+.. .....++..+|+|+.|+=
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 78888888777653 233456677888888764
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.70 E-value=0.014 Score=51.32 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=34.6
Q ss_pred CCCcEEEEEeCCCC-CcccCccccCCCCccEEEecCeeecCC-CccCCC--CCCeEEeeeeecCh------HHHHHHHcC
Q 016710 126 CNVKELSLELLGNP-RFNLPEIILCSNSIEILTLAGLKLESP-RSVKLS--SLTKLFLMRVDATD------LVLQSLLIG 195 (384)
Q Consensus 126 ~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~l~~~-~~~~~~--~L~~L~L~~~~~~~------~~l~~l~~~ 195 (384)
+.++.|+|+..... ...+|..+..+++|+.|+|+++.+... ....+. +|+.|+|.++.+.. .-...++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 45566555432211 112333334456666666666554411 111222 56666666555521 112234455
Q ss_pred CCCccEEE
Q 016710 196 CPLIEYLS 203 (384)
Q Consensus 196 ~p~Le~L~ 203 (384)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 55555543
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.63 E-value=0.091 Score=48.91 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=55.7
Q ss_pred cCCceeEEEEeCcccccceeccccCccCcEEEeeccc--cchHHHHHHhccCCCcceEeeccccccccc----ccCCCcc
Q 016710 238 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSL 311 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~----~~~~~~L 311 (384)
.+.+|+.+.+......-..-.+.+|.+|+.+.|...- +.. ..+.+|.+|+.+.+... ++.+ ...|++|
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred ccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 4667777777543211112236678999999985431 222 24678999999998542 3333 3457899
Q ss_pred cEEecccc-ccceeecccCCCCcee
Q 016710 312 KLLEIYDC-LRLVEVKIAASSLSIF 335 (384)
Q Consensus 312 ~~L~l~~c-~~l~~~~~~~~~L~~L 335 (384)
+.+.+.+. ..+..-..+|++|+.+
T Consensus 369 ~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred CEEEECCCCEEhhheecCCCCCcEE
Confidence 99998642 2222223567777765
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.14 E-value=0.25 Score=45.92 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCCCCceEEecccc-ccceee-ecCCceeEEEEeCcccccceeccccCccCcEEEeecc-c-cchHHHHHHhccCCCcce
Q 016710 217 GLTKLNKFEVCDAE-ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALT-H-IKDEWLCNQISKFPLLES 292 (384)
Q Consensus 217 ~~~~L~~L~l~~~~-~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~-~-~~~~~~~~l~~~~p~L~~ 292 (384)
.|..|+.+.+.... .+..-. ..+++|+.+.+......-..-.+.+|.+|+.+.|..+ . +.+ ..+.+|.+|++
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCE
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCE
Confidence 46677777765432 111111 2467777777754321111223667889999988543 1 222 24677899999
Q ss_pred Eeecc-cccc-cccccCCCcccEEeccccccceeecccCCCCceeEEecc
Q 016710 293 LLIAG-CDDL-KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD 340 (384)
Q Consensus 293 L~l~~-c~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~ 340 (384)
+.|-. ...+ ......|.+|+.+.+.+......-...+.+|+.+.+..+
T Consensus 339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred EEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 99843 2222 223346789999988754322222355778888877654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.83 E-value=1.5 Score=40.55 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=57.5
Q ss_pred HcCCCCccEEEeeeCCC-CceeecCCCCCCceEEecccc-ccceee-ecCCceeEEEEeCcccccceeccccCccCcEEE
Q 016710 193 LIGCPLIEYLSLQLCPG-LKNLELSGLTKLNKFEVCDAE-ELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR 269 (384)
Q Consensus 193 ~~~~p~Le~L~L~~c~~-~~~~~i~~~~~L~~L~l~~~~-~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 269 (384)
+..|..|+.+.+..... +..-....++.|+.+.+...- .+..-. ..|.+|+++.+......--.-.+.+|.+|+.+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence 44577777776643211 111122345666666664321 111111 145677777664432111112356788888888
Q ss_pred eecc--ccchHHHHHHhccCCCcceEeecccccccccccCCCcccEEecc
Q 016710 270 FALT--HIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIY 317 (384)
Q Consensus 270 L~~~--~~~~~~~~~l~~~~p~L~~L~l~~c~~l~~~~~~~~~L~~L~l~ 317 (384)
|... .+.. ..+.+|++|+.+++.+......-...+.+|+.+.+.
T Consensus 341 ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 341 IPSSVTKIPE----SAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp ECTTCCBCCG----GGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred ECcccCEEhH----hHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 8433 1222 246678888888887643221122344567666654
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.05 E-value=1.2 Score=37.00 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=17.5
Q ss_pred ccCcEEEeeccccchHHHHHHhc---cCCCcceEeecc
Q 016710 263 KFLKYLRFALTHIKDEWLCNQIS---KFPLLESLLIAG 297 (384)
Q Consensus 263 ~~L~~L~L~~~~~~~~~~~~l~~---~~p~L~~L~l~~ 297 (384)
..|++|+|..+.+++.....+.. .-..|+.|++++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 45556666555555544443322 223466666654
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.19 E-value=0.29 Score=40.74 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHh--CCCcEEEEEeC-CCCC---cccCccccCCCCccEEEecCeeecCCCcc-------CCCCCCeEEee
Q 016710 114 PYIDQCIFYALG--CNVKELSLELL-GNPR---FNLPEIILCSNSIEILTLAGLKLESPRSV-------KLSSLTKLFLM 180 (384)
Q Consensus 114 ~~~~~~l~~~~~--~~l~~L~l~~~-~~~~---~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-------~~~~L~~L~L~ 180 (384)
.+++..+..... ..+++|+|... ...+ ..+...+..-.+|+.|+|++|.+...... .=..|++|+|+
T Consensus 27 t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 27 TDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred CCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 345555555443 45666666421 2111 12333344456788888888776622111 34678888888
Q ss_pred eeecChHHHHHHHc---CCCCccEEEeeeC
Q 016710 181 RVDATDLVLQSLLI---GCPLIEYLSLQLC 207 (384)
Q Consensus 181 ~~~~~~~~l~~l~~---~~p~Le~L~L~~c 207 (384)
++.+++.+...+.. ....|++|+|.++
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 88887766665543 3445666666543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.60 E-value=1.8 Score=39.58 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=47.0
Q ss_pred cCCceeEEEEeCcccccceeccccCccCcEEEeeccccchHHHHHHhccCCCcceEeecccc--cc-cccccCCCcccEE
Q 016710 238 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DL-KSINISSRSLKLL 314 (384)
Q Consensus 238 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~p~L~~L~l~~c~--~l-~~~~~~~~~L~~L 314 (384)
.+.+|+.+.+-.....-....+..|.+|+.+.+...- ..- -...+.+|++|+.+.+.+.. .+ ......|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCCccEeCccccceeehhccccccccc-eec-cccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3456666666433211111124456677777664321 100 01234567777777775421 12 1222345677777
Q ss_pred eccc-ccccee-ecccCCCCceeEEe
Q 016710 315 EIYD-CLRLVE-VKIAASSLSIFKYS 338 (384)
Q Consensus 315 ~l~~-c~~l~~-~~~~~~~L~~L~l~ 338 (384)
.|-+ ...+.+ --.+|.+|+++.+-
T Consensus 316 ~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred EcCccccEEHHHHhhCCCCCCEEEEC
Confidence 7742 222221 12456777766663
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=74.00 E-value=8.3 Score=35.03 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=5.4
Q ss_pred CCCCccEEEee
Q 016710 195 GCPLIEYLSLQ 205 (384)
Q Consensus 195 ~~p~Le~L~L~ 205 (384)
.|..++...+.
T Consensus 156 ~~~~l~~~~~~ 166 (379)
T 4h09_A 156 KAENLEKIEVS 166 (379)
T ss_dssp TCTTCCEEEEC
T ss_pred ccccccccccc
Confidence 45555555443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.33 E-value=6 Score=30.06 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=29.6
Q ss_pred ccCccccCCCCccEEEecCeeec-CCCc--cCCCCCCeEEeeeeec
Q 016710 142 NLPEIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDA 184 (384)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~l~-~~~~--~~~~~L~~L~L~~~~~ 184 (384)
.+|..+ -++|++|+|+++.+. .+.. ..+++|+.|+|.++.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 566543 346899999998776 3322 2688999999998877
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.53 E-value=9.8 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=16.4
Q ss_pred ceeEEEEeCccccccee-ccccCccCcEEEeeccc
Q 016710 241 DVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTH 274 (384)
Q Consensus 241 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 274 (384)
+++.|+++++....... .+..+++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 55666665554322221 23445555566655544
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.62 E-value=75 Score=19.07 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=13.2
Q ss_pred ccccCCCCHHHHHHHhcCC
Q 016710 7 IDRISNLPEPILHHILSFL 25 (384)
Q Consensus 7 ~d~is~LPdeil~~I~s~L 25 (384)
.+.|+.||.||-.+|++--
T Consensus 18 ~eVF~~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSGK 36 (48)
T ss_dssp GGGTTTSCHHHHHHHTTCC
T ss_pred HHHHHHCcHHHHHHHHhcc
Confidence 4457778888887777643
No 172
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=20.60 E-value=20 Score=17.88 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=8.1
Q ss_pred hhhhhhcccce
Q 016710 39 TWKRAWHTFSV 49 (384)
Q Consensus 39 rW~~lw~~~~~ 49 (384)
.|+++|++++.
T Consensus 2 awknfwsslrk 12 (26)
T 2khf_A 2 AWKNFWSSLRK 12 (26)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 48888987654
Done!