Your job contains 1 sequence.
>016711
MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE
VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN
KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED
MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR
GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW
SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE
PENTPKATTNKKSKAGGGGGRKRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016711
(384 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 1621 1.2e-166 1
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 1090 2.3e-110 1
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 1071 2.4e-108 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 1071 2.4e-108 1
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 1067 6.3e-108 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 1062 2.1e-107 1
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 1062 2.1e-107 1
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 1059 4.4e-107 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 1051 3.1e-106 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 1045 1.4e-105 1
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 1041 3.6e-105 1
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 1026 1.4e-103 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 1005 2.3e-101 1
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 1001 6.2e-101 1
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 997 1.7e-100 1
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 967 2.5e-97 1
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 941 1.4e-94 1
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 936 4.8e-94 1
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 922 1.5e-92 1
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 847 1.3e-84 1
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 847 1.3e-84 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 465 1.3e-57 2
UNIPROTKB|F5H1Y3 - symbol:FEN1 "Flap endonuclease 1" spec... 559 4.3e-54 1
UNIPROTKB|I3L3E9 - symbol:FEN1 "Flap endonuclease 1" spec... 385 1.2e-35 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 185 5.9e-27 4
POMBASE|SPAC12G12.16c - symbol:SPAC12G12.16c "Fen1 family... 249 1.4e-23 2
GENEDB_PFALCIPARUM|PF10_0080 - symbol:PF10_0080 "endonucl... 234 5.9e-23 2
UNIPROTKB|Q8IJW1 - symbol:PF10_0080 "Endonuclease, putati... 234 5.9e-23 2
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 216 3.1e-22 3
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 216 3.1e-22 3
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 262 3.2e-21 1
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 259 6.1e-21 2
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 261 7.9e-21 1
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 169 9.8e-21 2
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 260 1.4e-20 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 258 3.9e-20 1
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 257 5.7e-20 1
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 175 1.2e-19 2
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 254 1.6e-19 1
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 253 2.0e-19 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 251 2.2e-19 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 253 2.6e-19 1
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 240 2.7e-19 2
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 252 3.5e-19 1
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 168 6.8e-19 3
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 249 9.1e-19 1
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 183 1.3e-18 2
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 163 1.7e-18 3
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 169 2.1e-18 3
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 167 4.9e-18 2
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 213 5.1e-18 2
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 213 5.1e-18 2
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 218 1.1e-17 1
SGD|S000002671 - symbol:DIN7 "Mitochondrial nuclease func... 235 1.2e-17 1
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 239 1.3e-17 1
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 239 1.4e-17 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 239 1.5e-17 1
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 238 1.8e-17 1
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 216 1.9e-17 1
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 169 2.5e-17 3
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 238 3.4e-17 1
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 234 6.2e-17 1
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 168 8.8e-16 3
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 163 1.4e-15 3
FB|FBgn0015553 - symbol:tos "tosca" species:7227 "Drosoph... 217 6.2e-15 1
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 218 6.7e-15 1
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 218 6.7e-15 1
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 215 6.9e-15 1
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 215 1.5e-14 1
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 205 2.1e-13 1
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 203 3.5e-13 1
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 199 4.3e-13 1
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 194 3.8e-12 1
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 194 1.2e-11 2
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 144 2.4e-11 2
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 191 6.5e-11 2
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 182 7.6e-11 2
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 185 7.7e-11 1
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 165 5.0e-10 2
GENEDB_PFALCIPARUM|PF07_0105 - symbol:PF07_0105 "exonucle... 174 1.1e-09 1
UNIPROTKB|Q8IBK1 - symbol:PF07_0105 "Exonuclease I, putat... 174 1.1e-09 1
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 169 1.3e-09 1
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 161 1.1e-08 1
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 150 3.4e-08 2
RGD|1586176 - symbol:Ercc5 "excision repair cross-complem... 139 3.7e-07 1
CGD|CAL0001028 - symbol:orf19.652 species:5476 "Candida a... 143 4.1e-06 2
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 127 8.4e-06 1
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 103 1.3e-05 4
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 125 6.2e-05 1
DICTYBASE|DDB_G0294290 - symbol:DDB_G0294290 "xeroderma p... 124 0.00024 1
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
Identities = 309/359 (86%), Positives = 332/359 (92%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRK 359
++PDEEG++ FLV+ENGFN DRVT SSQGRLESFFKPVAN+S P KRK
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRK 359
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
Identities = 213/367 (58%), Positives = 270/367 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KE + +SYFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF ++IL+++ LT QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF EPEVV D + +KW
Sbjct: 240 GIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEARGLFLEPEVV-DGTSVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
+ PDE+GLI F+ +E F+ DR+ S+QGRL++FF + S+ KRKE
Sbjct: 299 NEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISS--KRKE 356
Query: 361 PENTPKA 367
PE A
Sbjct: 357 PETKGSA 363
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 206/375 (54%), Positives = 277/375 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGAEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R++A L EA EAG
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+VYA A+ED
Sbjct: 120 EANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + ++L++L LT +QF+DLCIL GCDYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+V+ ++ +++KW
Sbjct: 240 GIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVINPDD-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVAN-TSAPIKRK 359
+ P+EE L+ F+ E FN +R+ S+QGRL+ FFK + TSA KRK
Sbjct: 299 TEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFKVTGSITSA--KRK 356
Query: 360 EPENT----PKATTN 370
EPE KA TN
Sbjct: 357 EPETKGSAKKKAKTN 371
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 202/366 (55%), Positives = 273/366 (74%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+Y+FDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+S+R
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EAR+LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFKVTGSLSSA-KRKE 357
Query: 361 PENTPK 366
PE PK
Sbjct: 358 PE--PK 361
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 204/369 (55%), Positives = 273/369 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE LI F+ E F+ +R+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSA-KRKE 357
Query: 361 PENTPKATT 369
PE PK +T
Sbjct: 358 PE--PKGST 364
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 204/366 (55%), Positives = 271/366 (74%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE LI F+ E F+ +R+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 SEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSA-KRKE 357
Query: 361 PENTPK 366
PE PK
Sbjct: 358 PE--PK 361
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 203/368 (55%), Positives = 272/368 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + +IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSA-KRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 203/368 (55%), Positives = 272/368 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 GEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPEAVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSA-KRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 201/363 (55%), Positives = 267/363 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+A+DASM IYQFLI V + G ML NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-MLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++ +++ + +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH +IE I++NI+ ++Y IPE+W ++EAR+LF EPEV+ D + ++KW
Sbjct: 240 GIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQLFLEPEVI-DADITELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ F+ E F+ DR+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 TEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSISST-KRKE 357
Query: 361 PEN 363
E+
Sbjct: 358 VES 360
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 203/366 (55%), Positives = 270/366 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TS L GMF RTIR+ E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 118 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 178 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEVV D E +++KW
Sbjct: 238 GIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-DPESVELKW 296
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ S+QGRL+ FFK + S+ KRKE
Sbjct: 297 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSA-KRKE 355
Query: 361 PENTPK 366
PE PK
Sbjct: 356 PE--PK 359
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 199/367 (54%), Positives = 267/367 (72%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+A+DASM IYQFLI V + G L NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGNT-LQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++++++ +T +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D + ++KW
Sbjct: 240 GIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DTDITELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ F+ E F+ DR+ S+QGRL+ FFK + S+ KRKE
Sbjct: 299 IEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSVSST-KRKE 357
Query: 361 PENTPKA 367
E+ A
Sbjct: 358 AESKGSA 364
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 192/360 (53%), Positives = 259/360 (71%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++L+++AP S+K ++YFGRK+AIDASMS+YQFLI V + L NE GE
Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP +VFDG+PP LK ELAKR ++ A +D E E G
Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++F+KRTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+VYA ASED
Sbjct: 121 AEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E+ + K L L+++++QF+DLCIL GCDYC+ IR
Sbjct: 181 MDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G A++LIRQ+G+++ ++ +R +Y IPEDWPY++ARRLF + EV+ EE +++KW
Sbjct: 241 GVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEE-IELKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANT-SAPIKRK 359
+PD +G+I FLV E GFN DRV QGRL+SFFKPV ++ P+ K
Sbjct: 300 KSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTK 359
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 192/365 (52%), Positives = 260/365 (71%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++++ADNAP ++K + +++FGR +AIDASM +YQFLI V + G++ L +E GE
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQ-LQSEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GM RT+R+ E G+KP+YVFDG+PPD+K EL KR +RA+A L EA E G+
Sbjct: 60 TTSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ EKF +R VKVTKQ ND+ KRLL LMG+PVVEAP EAEAQCA L K+G+V+ +ED
Sbjct: 120 VKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRH + P ++KIP+ EF ++ LEE+ L++++FIDLCIL GCDYC +IR
Sbjct: 180 MDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LIRQH +IETILENI++ +Y PEDWPY+ AR LF PEV T E++++ W
Sbjct: 240 GVGPKKAVELIRQHKNIETILENIDQNKYPPPEDWPYKRARELFLNPEV-TKPEEVELTW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFF---KPVANTSAPIK 357
D EG+I FL E FN +R+ +QGR++SFF V +A K
Sbjct: 299 KEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFFGNSTKVTCVTAATK 358
Query: 358 RKEPE 362
RK E
Sbjct: 359 RKAEE 363
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 194/370 (52%), Positives = 258/370 (69%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ +NAP ++K + ++ FGRK+AIDASMSIY FLI V R+ EMLTNE G+
Sbjct: 1 MGIKQLFTIIKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAV-RSNGEMLTNEDGQ 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C++LLKLMG+P + AP+EAEAQCA L ++G+V+A ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL +RK P+ E V K+LE L++ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQ 297
+G TALKLIR+HGS+ETI+E + + +Y +PEDWP+++AR LF P V D
Sbjct: 240 KVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAVHPADHPDCN 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIK 357
KW PD EGL+ +LV+E GF+ DRV S Q RLE FFKPVA T+ K
Sbjct: 300 FKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPVARTAEEQK 359
Query: 358 RKEPENTPKA 367
+ + KA
Sbjct: 360 AHKRKLEVKA 369
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
Identities = 193/369 (52%), Positives = 259/369 (70%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++A+NAP ++K +++FGRK+AIDASMSIY FLI V G ++++ + GE
Sbjct: 1 MGIKHLYQVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMS-DTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + + LE L + +QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR HG++E ++E+I ++ +Y IPE WPYQ+AR LF P+V ++ +
Sbjct: 240 KVGPNTALKLIRDHGTLEKVVESIEKDPKQKYVIPESWPYQDARELFLNPDVRDANDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAP- 355
KW APD EGL++FLV + GFN DRV + Q RLE FFKPVA T A
Sbjct: 300 DFKWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVAKTDAEK 359
Query: 356 --IKRKEPE 362
+KRK E
Sbjct: 360 ATLKRKHDE 368
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 190/372 (51%), Positives = 258/372 (69%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV D + + +KW
Sbjct: 240 GIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVA-DADSIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANT--SAPIKR 358
PDEEGL+ FL + FN +RV +Q RL+SFFK + +T + +
Sbjct: 299 VEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPSTPNATNAAK 358
Query: 359 KEPENTPKATTN 370
++ E K+ N
Sbjct: 359 RKAEEAKKSANN 370
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 182/366 (49%), Positives = 248/366 (67%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK LT L+ DNAP S+K ++YFGR IAIDAS S+YQFLI + + LTN+ GE
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNILKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHLQGMF RTI+L+ G+KPIYVFDG P LK ELAKR ++R +A ++L EA E G
Sbjct: 61 TTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++KF+KR + VT++ N+DC +LL LMGVP+V+AP EAEAQCA + K G+ +A SED
Sbjct: 121 NEEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLT G+ LR L ++K+P++EFE+ +LE L LT D+FIDL IL GCDYCDSI+
Sbjct: 181 MDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI++H S+E +++++++ +Y +PE +PY E R LFK P V+ ++ +W
Sbjct: 241 GIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPADQLPPFQW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPI-KRK 359
PD EGL FLV E GF+ RV S Q R++SF + P K+K
Sbjct: 301 KDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITVIKKPEDPNDKKK 360
Query: 360 EPENTP 365
+ TP
Sbjct: 361 KVTKTP 366
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 179/370 (48%), Positives = 254/370 (68%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A + G
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+VYA ASED
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GCDYC+SI+
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
GIG TA KLI++HGS++ I+E I N+ +Y +PE+WPY EAR+LF PEV T+ ++ +
Sbjct: 241 GIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPYDEARQLFMNPEV-TNASEINL 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTSAPIKR 358
KW PD +GLI F+V + GF+ DR+ QGRL+ FFK V T ++
Sbjct: 300 KWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFK-VVKTDDKKRK 358
Query: 359 KEPENTPKAT 368
+P+ + KA+
Sbjct: 359 ADPKES-KAS 367
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 182/371 (49%), Positives = 250/371 (67%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KM---KQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFKPVANTS-- 353
+ +KWS P E+ LI +L + F+ +RV QGRL+ FF+ V T
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKTKEQ 356
Query: 354 -APIKRKEPEN 363
A ++ EN
Sbjct: 357 LAAAAKRAQEN 367
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 175/369 (47%), Positives = 244/369 (66%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K ES GR IAIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L + S R + E + ++L+ LNLTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKSFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 347
V+ E+ ++I W+ P E L +FL+ + FN RVT ++Q RL++FF
Sbjct: 300 NVLPKED-IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Query: 348 PVANTSAPI 356
S +
Sbjct: 359 ACTKKSTKL 367
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 175/369 (47%), Positives = 244/369 (66%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K ES GR IAIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L + S R + E + ++L+ LNLTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKSFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXXXXXXXXXXSSQGRLESFFK 347
V+ E+ ++I W+ P E L +FL+ + FN RVT ++Q RL++FF
Sbjct: 300 NVLPKED-IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Query: 348 PVANTSAPI 356
S +
Sbjct: 359 ACTKKSTKL 367
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 465 (168.7 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 92/185 (49%), Positives = 122/185 (65%)
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
N +C RLL LMGVP ++AP EAEA CA L K G V AVASEDMD+L FG LR L
Sbjct: 110 NQECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLN-- 167
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
+ R + E+ + K+LE L L ++F+DLCIL GCDYCD I G+G ALKLI++H +IE
Sbjct: 168 AKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHTIE 227
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
++E++NR+ + IP +W Y++AR+LF E + D + WS PDEEGL+ FL E
Sbjct: 228 GVMEHVNRKTHPIPLNWQYKDARKLFFETPKIDDPV---LAWSEPDEEGLVQFLCKEKPL 284
Query: 319 NSDRV 323
+RV
Sbjct: 285 KEERV 289
Score = 145 (56.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 41/122 (33%), Positives = 61/122 (50%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L L+ +AP SM+ ++ Y G+ IA+D S+ + QF + G L
Sbjct: 1 MGITKLAHLIHFDAPASMRSKEIGDYSGKIIALDTSIVVNQFRSAL--PGHLKL------ 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
S L G+F RT+ LE +KP++V DG+PP K+ L KR ++ A N
Sbjct: 53 --SPLAGLFYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWSSSQSPNTGSAFN 110
Query: 121 KE 122
+E
Sbjct: 111 QE 112
>UNIPROTKB|F5H1Y3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007613 "memory" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00485 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081 GO:GO:0048256
HGNC:HGNC:3650 ChiTaRS:FEN1 EMBL:AP002380 IPI:IPI01009939
ProteinModelPortal:F5H1Y3 SMR:F5H1Y3 Ensembl:ENST00000535723
ArrayExpress:F5H1Y3 Bgee:F5H1Y3 Uniprot:F5H1Y3
Length = 165
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 107/166 (64%), Positives = 133/166 (80%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAA 166
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAA
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAA 165
>UNIPROTKB|I3L3E9 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 SMART:SM00279
GO:GO:0003677 GO:GO:0006281 GO:GO:0090305 GO:GO:0004518
PANTHER:PTHR11081 SUPFAM:SSF47807 HGNC:HGNC:3650 ChiTaRS:FEN1
EMBL:AP002380 Ensembl:ENST00000535307 Uniprot:I3L3E9
Length = 154
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 69/149 (46%), Positives = 104/149 (69%)
Query: 200 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE
Sbjct: 7 AKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEE 66
Query: 260 ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KWS P+EE LI F+ E F+
Sbjct: 67 IVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKWSEPNEEELIKFMCGEKQFS 125
Query: 320 SDRVTXXXXXXXXXXXXSSQGRLESFFKP 348
+R+ S+QGRL+ FFKP
Sbjct: 126 EERIRSGVKRLSKSRQGSTQGRLDDFFKP 154
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 185 (70.2 bits), Expect = 5.9e-27, Sum P(4) = 5.9e-27
Identities = 46/135 (34%), Positives = 73/135 (54%)
Query: 125 EKFSKRTV-KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
+K +R +VT+ +C++LL+L G+P + AP EAEAQCA L G V + ++D D
Sbjct: 794 QKKDRRDADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDI 853
Query: 184 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIG 243
FG R +++ + S V + A + +E L + I L G DY + I GIG
Sbjct: 854 FLFGGTRVYKNMFNQSKY---VECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIG 910
Query: 244 GQTALKLIRQHGSIE 258
TAL+++ + S+E
Sbjct: 911 PVTALEILTEFSSLE 925
Score = 163 (62.4 bits), Expect = 5.9e-27, Sum P(4) = 5.9e-27
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVQGLWTIVQPCA----RPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
SH+ G F R +LL G+KP++VFDG P LK+Q +A R +R +D AV+ +
Sbjct: 53 --SHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIANRKKRREGRRED---AVQTAS 107
Query: 121 K 121
K
Sbjct: 108 K 108
Score = 76 (31.8 bits), Expect = 5.9e-27, Sum P(4) = 5.9e-27
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 271 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
+P +P + EPE D Q W PD GL NFL++ G++ +R
Sbjct: 961 LPPTFPDARVDAAYLEPEADRDPSPFQ--WGVPDLHGLRNFLMATIGWSQER 1010
Score = 48 (22.0 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
FSK ++ K+ ND +RL+ + G+ EA ++ + A + G+ Y + ++
Sbjct: 259 FSKFQIERVKERNDLTQRLMNINGMNGDEAFYKSGQRIAG--ERGKEYVLVQDN 310
Score = 45 (20.9 bits), Expect = 5.4e-15, Sum P(4) = 5.4e-15
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 6 LTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQF 42
L ++ A N P+ M +++ E Y R+ +++Y F
Sbjct: 174 LQEMGAPNDPRIMSQEELEEY-ARQFHQGEDINLYDF 209
Score = 39 (18.8 bits), Expect = 5.9e-27, Sum P(4) = 5.9e-27
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 111 DLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
D+AE+V+ +E + S VT Q
Sbjct: 651 DVAESVQTDGEESVRSSSPEFEDVTVQ 677
>POMBASE|SPAC12G12.16c [details] [associations]
symbol:SPAC12G12.16c "Fen1 family nuclease, XP-G
family (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=ISM] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281
"DNA repair" evidence=ISM] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC12G12.16c GO:GO:0005737
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004519 GO:GO:0004518 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 PIR:T37913 RefSeq:NP_592882.1
ProteinModelPortal:Q09708 EnsemblFungi:SPAC12G12.16c.1
GeneID:2543216 KEGG:spo:SPAC12G12.16c OrthoDB:EOG4VT96S
NextBio:20804238 Uniprot:Q09708
Length = 496
Score = 249 (92.7 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 64/201 (31%), Positives = 111/201 (55%)
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
DL+ L + K D+L +A++ E ++K +R + + Q+ + +LK++G+
Sbjct: 232 DLECLTLCLKIIKGILTLDELQKAIKLKQTE-LDKLERRLYRPSPQNIFEIFEILKILGI 290
Query: 152 PVVEAPS--EAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR-KIPVMEF 208
P +P EAEA +A+ ++ YAVA++D D L G+ + + +D + +P+
Sbjct: 291 PASFSPIGVEAEAFASAISQNNLAYAVATQDTDVLLLGSS-MISNFLDLNDNFHLPLQIM 349
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN-RE 267
+ KI +ELNLT D F D C++ G D+ I IG ALKLIR +G+ +L+ +N E
Sbjct: 350 DPRKIAQELNLTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEE 409
Query: 268 RYQIPEDW--PYQEARRLFKE 286
+Y IP D+ + A++LF +
Sbjct: 410 KYIIPTDYIKKFLTAKKLFTD 430
Score = 74 (31.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 30/104 (28%), Positives = 51/104 (49%)
Query: 1 MGIKGLTKLLADNAPKSMK--EQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA 58
MG+ GL ++ A + ++ + +F S + +A+D ++ +Y+F T + TN
Sbjct: 1 MGVHGLLPIIRKVASEGIRWLQPEFFSKYYPVLAVDGNLLLYRFF---RSPNTPLHTNYQ 57
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDG-QPPDLKKQELAKR 101
V L+ +R R L+ PI VFD +P D K +E KR
Sbjct: 58 -HVLWALK--LSRYCRKLKTS--PIVVFDNLKPNDFKAEEHEKR 96
>GENEDB_PFALCIPARUM|PF10_0080 [details] [associations]
symbol:PF10_0080 "endonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 234 (87.4 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 54/145 (37%), Positives = 82/145 (56%)
Query: 127 FSKRT-VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
F K +K+ + +D L L +P+ ++AE +CA C S + V S+D D+L
Sbjct: 212 FKKNIFIKINSKTANDIYNYLLLENIPIFITKNDAEKECAIQC-SHERDIVVSDDTDALA 270
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
FGAP +R + + R I E ++L ELN+ +QFID CILSGCDY I GIG
Sbjct: 271 FGAPNLIRFITNKKKRHIINKE----ELLNELNINYEQFIDFCILSGCDYSAKIPGIGPV 326
Query: 246 TALKLIRQHGSIETILENINRERYQ 270
A ++I+++ +IET LE+ +Y+
Sbjct: 327 KAHEIIKKYKTIETFLESNAFNKYK 351
Score = 82 (33.9 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 1 MGIKGLTKLLADNAPKSMKE-QKFESYFGRKIAIDASMSIYQFLIVVGR----TGTEMLT 55
M IKGL + + P ++K+ S+ G+K ID + IY+F+ V + L
Sbjct: 1 MTIKGLVRFINKKIPSTIKKIDDINSFKGKKFIIDGTFFIYKFMYVAWKHIINDKNRDLK 60
Query: 56 NEAGEVTSHL---QGMFTRTIRLLE 77
+A E+ +H+ Q + ++I LL+
Sbjct: 61 YKANELATHILIRQYIIKKSIELLK 85
>UNIPROTKB|Q8IJW1 [details] [associations]
symbol:PF10_0080 "Endonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 GO:GO:0005739 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 EMBL:AE014185 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O29975 RefSeq:XP_001347365.1
ProteinModelPortal:Q8IJW1 EnsemblProtists:PF10_0080:mRNA
GeneID:810238 KEGG:pfa:PF10_0080 EuPathDB:PlasmoDB:PF3D7_1008200
HOGENOM:HOG000283088 ProtClustDB:CLSZ2431727 Uniprot:Q8IJW1
Length = 388
Score = 234 (87.4 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 54/145 (37%), Positives = 82/145 (56%)
Query: 127 FSKRT-VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
F K +K+ + +D L L +P+ ++AE +CA C S + V S+D D+L
Sbjct: 212 FKKNIFIKINSKTANDIYNYLLLENIPIFITKNDAEKECAIQC-SHERDIVVSDDTDALA 270
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
FGAP +R + + R I E ++L ELN+ +QFID CILSGCDY I GIG
Sbjct: 271 FGAPNLIRFITNKKKRHIINKE----ELLNELNINYEQFIDFCILSGCDYSAKIPGIGPV 326
Query: 246 TALKLIRQHGSIETILENINRERYQ 270
A ++I+++ +IET LE+ +Y+
Sbjct: 327 KAHEIIKKYKTIETFLESNAFNKYK 351
Score = 82 (33.9 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 1 MGIKGLTKLLADNAPKSMKE-QKFESYFGRKIAIDASMSIYQFLIVVGR----TGTEMLT 55
M IKGL + + P ++K+ S+ G+K ID + IY+F+ V + L
Sbjct: 1 MTIKGLVRFINKKIPSTIKKIDDINSFKGKKFIIDGTFFIYKFMYVAWKHIINDKNRDLK 60
Query: 56 NEAGEVTSHL---QGMFTRTIRLLE 77
+A E+ +H+ Q + ++I LL+
Sbjct: 61 YKANELATHILIRQYIIKKSIELLK 85
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 216 (81.1 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 52/185 (28%), Positives = 94/185 (50%)
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
++ +K K +++ + NDD K LL G+P +++P EAEAQC+ L A+ S+D
Sbjct: 1195 KEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDS 1254
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
D L F +++ + +K V +E I E+L L ++ I++ +L GCDY + G
Sbjct: 1255 DVLVFSGKTVIKNFFN---KKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHG 1311
Query: 242 IGGQTALKLIRQHGSIET--ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
IG AL++I+ + E IL++I ++ + Y E + F + + ++
Sbjct: 1312 IGIVNALEIIKAFPNFEDLKILKDIVSNPFRKIDKNMYNEEIQQF-----LNTHKNYKLN 1366
Query: 300 WSAPD 304
W P+
Sbjct: 1367 WIFPN 1371
Score = 102 (41.0 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 122
+HL F R +LL ++PI++FDG PP+LK++ + +R K+ + + + E
Sbjct: 81 AHLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAEKLVYN 140
Query: 123 DIEKFSKRTVKVTKQHNDDCKRL 145
++ ++K + ND+ +
Sbjct: 141 YYQRTLLNSMKSKNKKNDNSNNI 163
Score = 76 (31.8 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 272 PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
P ++P +E + FK P+V TD ++ + W PD + + FL + ++V
Sbjct: 1370 PNNFPDREVYKCFKYPKVCTDIKKFE--WHVPDIKSITKFLHKTTNISEEKV 1419
Score = 59 (25.8 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQ 41
MG+KGL +++ P ++ E + G++IAID S+ +Y+
Sbjct: 1 MGVKGLWSIVS---PVGVRVNP-EIFTGKRIAIDVSIWLYE 37
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 216 (81.1 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 52/185 (28%), Positives = 94/185 (50%)
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
++ +K K +++ + NDD K LL G+P +++P EAEAQC+ L A+ S+D
Sbjct: 1195 KEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDS 1254
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
D L F +++ + +K V +E I E+L L ++ I++ +L GCDY + G
Sbjct: 1255 DVLVFSGKTVIKNFFN---KKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHG 1311
Query: 242 IGGQTALKLIRQHGSIET--ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
IG AL++I+ + E IL++I ++ + Y E + F + + ++
Sbjct: 1312 IGIVNALEIIKAFPNFEDLKILKDIVSNPFRKIDKNMYNEEIQQF-----LNTHKNYKLN 1366
Query: 300 WSAPD 304
W P+
Sbjct: 1367 WIFPN 1371
Score = 102 (41.0 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 122
+HL F R +LL ++PI++FDG PP+LK++ + +R K+ + + + E
Sbjct: 81 AHLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAEKLVYN 140
Query: 123 DIEKFSKRTVKVTKQHNDDCKRL 145
++ ++K + ND+ +
Sbjct: 141 YYQRTLLNSMKSKNKKNDNSNNI 163
Score = 76 (31.8 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 272 PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
P ++P +E + FK P+V TD ++ + W PD + + FL + ++V
Sbjct: 1370 PNNFPDREVYKCFKYPKVCTDIKKFE--WHVPDIKSITKFLHKTTNISEEKV 1419
Score = 59 (25.8 bits), Expect = 3.1e-22, Sum P(3) = 3.1e-22
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQ 41
MG+KGL +++ P ++ E + G++IAID S+ +Y+
Sbjct: 1 MGVKGLWSIVS---PVGVRVNP-EIFTGKRIAIDVSIWLYE 37
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 262 (97.3 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 92/311 (29%), Positives = 146/311 (46%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL P +K KF G +A+DA +++ + L G
Sbjct: 1 MGIVGLLPLLKSIQRPTELK--KFA---GETLAVDAYGWLHRGAVSCA------LELAQG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T +R+++ G P VFDG K A R +R ++ E ++A
Sbjct: 50 KPTRKYVDFAMHRVRMVKYFGATPYIVFDGDFLPSKALTEASRAKRREESKKAGMELLKA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + ++ + VT + + LK + VP V AP EA+AQ L ++G V + S
Sbjct: 110 GKPAQAYQEFQKAIDVTPEMARELIEELKKIDVPYVVAPYEADAQMVYLERNGYVSGIIS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLT--MD-QFIDLCILSGCDY 235
ED D L FGA R L L D + I V E + E++LT D +F + I SGCDY
Sbjct: 170 EDSDLLVFGAKRLLTKL-DQHGQCIEVNRREFCAV-REISLTGWTDAEFRQMAIFSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTD 292
D I +G +TA ++IR+H + E ++ + E +++I E++ +++A F V
Sbjct: 228 LDGINKMGLKTAYRMIRKHKTPEKVIRQLQFEGKHKISENYLAAFKQAELTFMHQRVFCP 287
Query: 293 EEQLQIKWSAP 303
E+Q + + P
Sbjct: 288 EKQELVLLTEP 298
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 259 (96.2 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 82/284 (28%), Positives = 141/284 (49%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL + + + A + + +K++ G+ +A+D +++ + E L GE
Sbjct: 1 MGIQGLLQFIKE-ASEPVHVRKYK---GQVVAVDTYCWLHKGAVACA----EKLAK--GE 50
Query: 61 VTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T G + + LL G+KPI VFDG P K+ E ++R ++A+ + +
Sbjct: 51 PTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKG-KQLLRE 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + + R++ +T + + GV + AP EA+AQ A L K+G V A+ +
Sbjct: 110 GKVSEARECFTRSINITHAMAHSVIKAARAQGVDCLVAPYEADAQLAYLNKAGIVQAIIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFIDLCILSGCDYC 236
ED D L FG + + MD + V + + K ++L T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGKC-KQLGDVFTEEKFRYMCILSGCDYL 227
Query: 237 DSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A K++R + I +++ I + +PED+
Sbjct: 228 SSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
Score = 38 (18.4 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 278 QEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
+E+ + P VTD++ + P+++ L++ ++EN
Sbjct: 520 KESNQPLDNP-AVTDKDTNVNESDCPNDKKLVDTCIAEN 557
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 261 (96.9 bits), Expect = 7.9e-21, P = 7.9e-21
Identities = 88/311 (28%), Positives = 142/311 (45%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL LL + K +KF G+ + +DA +++ + +++ +
Sbjct: 1 MGIKGLHGLLK-SIQKPCHLKKFS---GQTLGVDAYGWLHRGTVACA---VDLVLDRP-- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + +R LL G+KP VFDG P EL ++ + T + E G
Sbjct: 52 TTKHIDFVLSRVRMLLFFGVKPYLVFDGDNLPSKSGTELDRQQRRHESKTLGM-ELYRKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT LK + + V AP EA+AQ L K G + + SE
Sbjct: 111 RTAEAYQELQKAVDVTPLMARQLIEELKKLDIQYVVAPYEADAQLVYLEKHGFIDGIISE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA R L L D I + +F + + + T F +CI+SGCDY
Sbjct: 171 DSDLLVFGAKRLLSKL-DQHGELIEINRADFTACREVSFVGWTDADFRRMCIMSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRER-YQIPEDW--PYQEARRLFKEPEVVTDEE 294
+I +G +TA + IR++ S+E L + E Y +P D+ + +A F V +
Sbjct: 230 NIARVGLKTAYRSIRKYKSVEKALRMLQFEGPYHVPADYLQSFMQAELTFLYQRVFCPKS 289
Query: 295 QLQIKWSAPDE 305
+ ++PD+
Sbjct: 290 GKLVPLTSPDD 300
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 169 (64.5 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 42/112 (37%), Positives = 65/112 (58%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAG 59
MG+ GL +L P + K E+ +++AIDAS+ IYQFL V + G ++ +
Sbjct: 1 MGVSGLWDILE---PVK-RPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKS---- 52
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+KP++VFDG P LK+Q + KR ++R D ++
Sbjct: 53 ---SHVVGFFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREEN 101
Score = 156 (60.0 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 114 EAVEAGNKE--DIEKFSKRTV-KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 170
EA E KE + ++ KR +VT+ +C+ LL+L G+P + AP EAEAQC+ L +
Sbjct: 729 EAFEKRLKELKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLEL 788
Query: 171 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 230
V + ++D D FG R R++ + ++ + + + K E N+ I L L
Sbjct: 789 KLVDGIVTDDSDVFLFGGTRVYRNMFN-QNKFVELYLMDDMK--REFNVNQMDLIKLAHL 845
Query: 231 SGCDYCDSIRGIGGQTALKLIRQ 253
G DY + +G AL+++ +
Sbjct: 846 LGSDYTMGLSRVGPVLALEILHE 868
Score = 74 (31.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 57/253 (22%), Positives = 105/253 (41%)
Query: 86 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 145
F+ + +LK Q KR KR DA D++ + + +E + F + ++ C +L
Sbjct: 731 FEKRLKELKNQ---KRSEKR-DA-DEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKL 785
Query: 146 LKLMGVP-VVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR-HLMDPSSRKI 203
L+L V +V S+ L +VY +M F +F+ +LMD R+
Sbjct: 786 LELKLVDGIVTDDSDV-----FLFGGTRVY----RNM----FNQNKFVELYLMDDMKREF 832
Query: 204 PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTAL--------KLIRQHG 255
V + ++ K+ L D + L + + + G T L +L H
Sbjct: 833 NVNQMDLIKLAHLLG--SDYTMGLSRVGPVLALEILHEFPGDTGLFEFKKWFQRLSTGHA 890
Query: 256 S---IET-ILENINR--ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
S + T + + IN+ + +P ++P + P V D+ + +W PD + L
Sbjct: 891 SKNDVNTPVKKRINKLVGKIILPSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDLDELR 948
Query: 310 NFLVSENGFNSDR 322
FL++ G++ R
Sbjct: 949 QFLMATVGWSKQR 961
Score = 44 (20.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNK-EDIEKF 127
D+ +L Y R + D+L + V + K EDI F
Sbjct: 175 DVSFDKLGSSYDPRIMSQDELTQYVSSFTKIEDINLF 211
Score = 39 (18.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGV 151
FS+ ++ K+ ND +RL+ G+
Sbjct: 263 FSRFQIERLKERNDLTQRLMDFTGM 287
Score = 37 (18.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 272 PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
P DW K+P + + I APD L+
Sbjct: 510 PMDWGKSIFFEKLKKPTETFMDSKTDIPSEAPDNSKLV 547
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 260 (96.6 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 83/258 (32%), Positives = 129/258 (50%)
Query: 1 MGIKGLTKLLADNA-PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG-TEMLTNEA 58
MGI+GL + + + A P +K+ Y G+ +A+DA +++ G G E L
Sbjct: 1 MGIQGLLQFIKEAAEPAHVKK-----YRGQAVAVDAYCWLHK-----GSYGCAEKLAR-- 48
Query: 59 GEVTSHLQGMFTRTI-RLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAV 116
GE T H + + LL G+KP+ VFDG P K+ E A+R ++A+ +
Sbjct: 49 GEPTDHYVVFCMKLVDMLLSFGIKPVLVFDGCTLPSKKEVEKARREKRQANLLKG-KQLF 107
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
G + R+V VT + + + GV + AP EA+AQ A L K+G V A+
Sbjct: 108 REGKLSEARDCFARSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAI 167
Query: 177 ASEDMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCD 234
+ED D L FG + FL+ +D + + + + + N+ T ++F +CILSGCD
Sbjct: 168 ITEDSDLLAFGCKKVFLK--IDKFGNGLEIDQARLGNCKQLGNIFTEEKFRYMCILSGCD 225
Query: 235 YCDSIRGIGGQTALKLIR 252
Y SI GIG A KL++
Sbjct: 226 YLSSIHGIGLAKACKLLK 243
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 258 (95.9 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 84/285 (29%), Positives = 142/285 (49%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL + + + + P ++K+ K G+ +A+D +++ I E L G
Sbjct: 1 MGIQGLLQFIKEASEPVNVKKYK-----GQAVAVDTYCWLHKGAIACA----EKLAK--G 49
Query: 60 EVTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVE 117
E T G + + LL G+KPI VFDG P K+ E ++R ++++ + +
Sbjct: 50 EPTDRYVGFCMKFVNMLLSYGVKPILVFDGCTLPSKKEVERSRRERRQSNLLKG-KQLLR 108
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G + + R+V +T + + +GV + AP EA+AQ A L K+G V AV
Sbjct: 109 EGKVSEARECFTRSVNITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVI 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFIDLCILSGCDY 235
+ED D L FG + + MD + V + + + ++L T ++F +CILSGCDY
Sbjct: 169 TEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLG-MCKQLGDVFTEEKFRYMCILSGCDY 226
Query: 236 CDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A K++R + I +++ I + +PED+
Sbjct: 227 LASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 257 (95.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 83/285 (29%), Positives = 141/285 (49%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL + + + + P ++K+ K G+ +A+D +++ I E L G
Sbjct: 1 MGIQGLLQFIQEASEPVNVKKYK-----GQAVAVDTYCWLHKGAIACA----EKLAK--G 49
Query: 60 EVTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVE 117
E T G + + LL G+KPI +FDG P K+ E ++R ++++ + +
Sbjct: 50 EPTDRYVGFCMKFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKG-KQLLR 108
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G + R++ +T + + +GV + AP EA+AQ A L K+G V AV
Sbjct: 109 EGKVSEARDCFARSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVI 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFIDLCILSGCDY 235
+ED D L FG + + MD + V + + + ++L T ++F +CILSGCDY
Sbjct: 169 TEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLG-MCKQLGDVFTEEKFRYMCILSGCDY 226
Query: 236 CDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A K++R + I +++ I R +PED+
Sbjct: 227 LASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDY 271
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 175 (66.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 55/211 (26%), Positives = 102/211 (48%)
Query: 93 LKKQE---LAKRYSKRADATDDLAEA--VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
+K+QE K + A ++AE VE E K + + +VT + + LL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
G+P + AP EAEAQCA L + V + ++D D FG + +++ K V
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMFH---EKNYVEF 837
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR- 266
++ IL+ L L I+L L G DY + ++G+G +++++I + G+++ + N
Sbjct: 838 YDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKNFKDWYNNG 897
Query: 267 ---ERYQIPEDWPYQEARRLFKEPEVVTDEE 294
+R Q E+ ++ R+ E++ D++
Sbjct: 898 QFDKRKQETENKFEKDLRKKLVNNEIILDDD 928
Score = 138 (53.6 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 12 DNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTR 71
D A + + + ES +++A+DAS+ IYQFL V + N SH+ G F R
Sbjct: 8 DIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRR 61
Query: 72 TIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+LL G++P++VFDG P LK++ + +R +R
Sbjct: 62 ICKLLYFGIRPVFVFDGGVPVLKRETIRQRKERR 95
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 264 INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
+N E + +D+P + PEV D + W PD + L +F+ ++ G+ ++
Sbjct: 919 VNNEII-LDDDFPSVMVYDAYMRPEV--DHDTTPFVWGVPDLDMLRSFMKTQLGWPHEK 974
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 254 (94.5 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 85/269 (31%), Positives = 132/269 (49%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL + + D A + M +K Y G+ +A+D Y +L + E L GE
Sbjct: 1 MGIQGLLQFIKD-ASEPMHVKK---YRGQTVAVDT----YCWLHKGAFSCAEKLAK--GE 50
Query: 61 VTSHLQGMFTRTI-RLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T + + LL G+KPI VFDG+ P ++ E ++R ++A+ + +
Sbjct: 51 PTDQYVSYCMKFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKG-KQLLRE 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + + R+V +T D R + GV V AP EA+AQ A L KS AV +
Sbjct: 110 GKITEARECFTRSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDYCD 237
ED D L FG + + MD + + + + + N+ T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVILK-MDKQGNGLEIEQCHLGRCKSLGNIFTEEKFRYMCILSGCDYLQ 228
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINR 266
S+ GIG A KL+R + + IL+ I +
Sbjct: 229 SLYGIGLGKACKLLRMANNPD-ILKVIKK 256
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 253 (94.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 97/334 (29%), Positives = 164/334 (49%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL P +KE + G +A+D +++ + R + L +
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELE-----GCIVAVDTYSWLHKGALSCSRELCKGLPTKR- 54
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
H+Q R L G+KPI VFDG P +K ++ KR R + +LA A+E
Sbjct: 55 ----HIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKE---NLARALEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + + V ++ + ++L+ V V AP EA+AQ A L + QV A+
Sbjct: 108 ANGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG R + MD + EF+ +K+ + +L++ F +++CILS
Sbjct: 168 ITEDSDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
GCDY S+ G+G + A LI + S + +++++ +P Y+E+ FK ++T
Sbjct: 224 GCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPP--LYEES---FKRA-LLT 277
Query: 292 DEEQLQIKWSAPDEEGLINFL-VSEN-GFNSDRV 323
+ Q + P+ E +I+ +S+N G +SD V
Sbjct: 278 FKHQ---RVYDPNAEDIIHLCDISDNLGEDSDFV 308
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 251 (93.4 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 83/311 (26%), Positives = 144/311 (46%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL LL P K E + G+ + +D + +++ + E+ N+ E
Sbjct: 1 MGIKGLLGLLK---PMQ-KSSHVEEFSGKTLGVDGYVWLHKAVFTCAH---ELAFNK--E 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ + + L G+KP+ VFDG P K KR +R +A + + + G
Sbjct: 52 TDKYLKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGK 111
Query: 121 KED-IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K I +FS R V VT + L+ G+ + AP EA+AQ L K + + +E
Sbjct: 112 KSQAIMQFS-RCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDS 238
D D L FGA L MD I + ++A + L L +++ + I SGCDY D
Sbjct: 171 DSDMLVFGAQTVL-FKMDGFGNCITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDG 229
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRER-YQIPEDWP--YQEARRLFKEPEVVTDEEQ 295
+ G+G +TAL+ ++++ + + ++ ++P + + A F+ V +++
Sbjct: 230 VAGMGLKTALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDK 289
Query: 296 LQIKWSAPDEE 306
+ S P+ E
Sbjct: 290 TLVHLSPPERE 300
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 253 (94.1 bits), Expect = 2.6e-19, P = 2.6e-19
Identities = 81/284 (28%), Positives = 140/284 (49%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL + + + A + + +K++ G+ +A+D +++ I E L GE
Sbjct: 1 MGIQGLLQFIKE-ASEPIHVRKYK---GQVVAVDTYCWLHKGAIACA----EKLAK--GE 50
Query: 61 VTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T G + + LL G+KPI VFDG P K+ E ++R ++A+ + +
Sbjct: 51 PTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKG-KQLLRE 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + + R++ +T + + GV + AP EA+AQ A L K+G V A+ +
Sbjct: 110 GKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFIDLCILSGCDYC 236
ED D L FG + + MD + + + + + +L T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVILK-MDQFGNGLEIDQARLG-MCRQLGDVFTEEKFRYMCILSGCDYL 227
Query: 237 DSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A K++R + I +++ I + +PED+
Sbjct: 228 SSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 240 (89.5 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 74/229 (32%), Positives = 112/229 (48%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL-EAGMKPIYVF 86
GR++A+D S F +V + A HL+ +F RT+ L + G P++V
Sbjct: 25 GRRVAVDLS-----FWVVSHSAAIRARSPHAR--LPHLRTLFFRTLSLFSKMGAFPVFVV 77
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAE--AVEAGNKEDIEKFSKRTVKVTKQHNDDCKR 144
DGQP LK Q A R+ + + DLA + EA D R K T+ + +DC
Sbjct: 78 DGQPSPLKSQVRAARFFRGSGM--DLAALPSTEAEASADA-LVQPRNAKFTR-YVEDCVE 133
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
LL+ +G+PV+ A E EA CA L G V A + D D+ FGA ++ L S+ K P
Sbjct: 134 LLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLR--SNCKEP 191
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIR 252
+ +A I L L Q + + +L G D+ + G G +TAL+ ++
Sbjct: 192 FECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
Score = 51 (23.0 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI-KWSAPDEEGLINFL 312
+R ++P +E L+ + + +E + + W+ PD E L++FL
Sbjct: 351 KRIAAETNFPNEEIINLYLNDDNLDNENGVPLLTWNKPDMEILVDFL 397
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 252 (93.8 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 83/284 (29%), Positives = 140/284 (49%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL + + + A + + +K++ G+ +A+D +++ + E L GE
Sbjct: 1 MGIHGLLQFIKE-ASEPIHIRKYK---GQVVAVDTYCWLHKGAVACA----EKLAK--GE 50
Query: 61 VTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T G + + LL G+KPI VFDG P K+ E ++R ++A+ + +
Sbjct: 51 PTDKYVGFCMKLVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKG-KQLLRE 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + + R++ +T + + + GV + AP EA+AQ A L K+G V AV +
Sbjct: 110 GKVSEARECFIRSINITHTMAHNVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAVIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFIDLCILSGCDYC 236
ED D L FG + + MD + V + + + ++L T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVILK-MDQFGNGLEVDQARLG-MCKQLGDVFTEEKFRYMCILSGCDYL 227
Query: 237 DSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A KL+R + I ++ I + +PED+
Sbjct: 228 SSLRGIGLAKACKLLRLANNPDILKVVRKIGHYLKMNITVPEDY 271
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 168 (64.2 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 47/139 (33%), Positives = 74/139 (53%)
Query: 129 KRTVK-VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
+RT VT Q + + LL+L G+P +EAP EAEAQCA L + Q ++D D FG
Sbjct: 759 ERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFG 818
Query: 188 APRFLRHLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
A RH+ K +E+ + +L L ++ I+L L G DY + I +G T
Sbjct: 819 A----RHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVT 874
Query: 247 ALKLIRQ---HGSIETILE 262
A++++ + HG +E +L+
Sbjct: 875 AMEILNEFPGHG-LEPLLK 892
Score = 134 (52.2 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 44/137 (32%), Positives = 72/137 (52%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL KLL + + + + + E G+ +A+D S+ + Q L R + N G
Sbjct: 1 MGVHGLWKLL-ECSGRQVSPETLE---GKILAVDISIWLNQAL----RGVRDCHGNSIGN 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL +F R +LL ++PI+VFDG P LKKQ LAKR ++ A D + E
Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAATDSRKTTEKLL 110
Query: 121 KEDIEKFSKRTVKVTKQ 137
K +++ + +T +K+
Sbjct: 111 KTFLKRQAIKTALKSKR 127
Score = 48 (22.0 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXX 327
+ Q+ +P + +P V D+ + W PD + + F G+N +
Sbjct: 921 KLQLTPGFPNPAVADAYLKP--VVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 978
Query: 328 X-XXXXXXXXSSQGRLESFFK 347
+Q R++SFF+
Sbjct: 979 FPVLKQLNAQQTQLRIDSFFR 999
Score = 43 (20.2 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 214 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
L+E + T Q + L +S + S G + LK I++H ++E+
Sbjct: 584 LQETSNT--QSVPLEAMSNLEDAVSFNGKEPENCLKTIQEHETVES 627
Score = 37 (18.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 353 SAPIKRKEPENTPKAT 368
S+P + +PE P AT
Sbjct: 322 SSPCEELKPEKEPAAT 337
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 249 (92.7 bits), Expect = 9.1e-19, P = 9.1e-19
Identities = 83/284 (29%), Positives = 139/284 (48%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL + + + A + + +K++ G+ +A+D +++ I E L GE
Sbjct: 1 MGIHGLLQFIKE-ASEPIHVRKYK---GQVVAVDTYCWLHKGAIACA----EKLAR--GE 50
Query: 61 VTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T G + + LL G+KP+ +FDG P K+ E ++R ++A+ E
Sbjct: 51 PTDKYVGFCMKFVNMLLSHGIKPVLIFDGCTLPSKKEVEKSRRERRQANLLKGKQLLREG 110
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
E E FS R++ +T + + GV + AP EA+AQ A L K+G V A+ +
Sbjct: 111 KVSEARECFS-RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFIDLCILSGCDYC 236
ED D L FG + + MD + + + + + +L T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVILK-MDQFGNGLEIDQARLG-MCRQLGDVFTEEKFRYMCILSGCDYL 227
Query: 237 DSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A K++R + I +++ I + +PED+
Sbjct: 228 SSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 183 (69.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 50/178 (28%), Positives = 89/178 (50%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E ++ + + VT Q + + LL+L GVP + AP EAEAQCAAL + Q + ++D
Sbjct: 641 REQHQQQQRSSSTVTGQMCQESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDD 700
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D FG R+ + + V +++ + +L L + I+L L G DY + I
Sbjct: 701 SDIWLFGGRHVYRNFFNQNKY---VEHYQIVDMQNQLGLDRSKLINLAYLLGSDYTEGIP 757
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPY-QEARRLFKEPEVVTDEEQLQ 297
G+G T ++++ + LE + Q+ E W QE ++L P+ +++L+
Sbjct: 758 GVGYVTGMEILNEFPGAG--LEPL----VQLSEWWTEAQENKKLSVNPKDTKVKKKLR 809
Score = 119 (46.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 36/117 (30%), Positives = 60/117 (51%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL KLL ++ K + + E G+ +A+D S+ + Q + V + N
Sbjct: 1 MGVHGLWKLL-ESTGKPINPETLE---GKILAVDISIWLNQAVKGVRDRDGNAVQN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
+HL +F R +LL ++P++V+DG P LKKQ LA R +R + + + E
Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSE 107
Score = 37 (18.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 94 KKQELAKRYSKRADATDDLAEAVEAGNK 121
K++E+ + A +TD + + E+ N+
Sbjct: 584 KEEEVEEEEESSAQSTDQIEDVDESVNE 611
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 163 (62.4 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 43/126 (34%), Positives = 66/126 (52%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + + LL+L G+P +EAP EAEAQCA L + Q ++D D FGA R
Sbjct: 780 VTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGA----R 835
Query: 194 HLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
H+ K +E+ + +L L ++ I+L L G DY + I +G TA++++
Sbjct: 836 HVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILN 895
Query: 253 Q---HG 255
+ HG
Sbjct: 896 EFPGHG 901
Score = 132 (51.5 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + + E G+ +A+D S+ + Q L V + N
Sbjct: 1 MGVQGLWKLL-ECSGRQISPETLE---GKILAVDISIWLNQALKGVRDRHGNSIEN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL +F R +LL ++PI+VFDG P LKKQ LAKR K+ A D E
Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSKTTTE--- 107
Query: 121 KEDIEKFSKRTV 132
+ ++ F KR V
Sbjct: 108 -KLLKTFLKRQV 118
Score = 52 (23.4 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 20/103 (19%), Positives = 37/103 (35%)
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXX 327
+ Q+ +P + +P V DE + W PD + + F G+N +
Sbjct: 936 KLQLTPGFPNPAVADAYLKP--VVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 993
Query: 328 X-XXXXXXXXSSQGRLESFFKPVANTSAPIKRKEPENTPKATT 369
+Q R++SFF+ K + + +A T
Sbjct: 994 FPVLKQLNVHQTQLRIDSFFRLAQQEKQEAKGIKSQRLNRAVT 1036
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 169 (64.5 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 44/132 (33%), Positives = 69/132 (52%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + + LL+L G+P +EAP EAEAQCA L + Q ++D D FGA +
Sbjct: 712 VTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYK 771
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
+ SR V ++ +L L + I+L L G DY + I +G TA++++ +
Sbjct: 772 NFF---SRNKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNE 828
Query: 254 ---HGSIETILE 262
HG +E +L+
Sbjct: 829 FPGHG-LEPLLK 839
Score = 123 (48.4 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + E G+ +A+D S+ + Q + V + N
Sbjct: 1 MGVQGLWKLL-ECTGRPVNPETLE---GKILAVDISIWLNQAVKGVRDRHGNTIQN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
+HL +F R +LL ++P++VFDG+ P LK+Q LAKR ++ A D + E
Sbjct: 53 --AHLLTLFNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAE 107
Score = 52 (23.4 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 19/89 (21%), Positives = 32/89 (35%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXX- 328
Q+ +P + +P V DE + W PD E + F G+ +
Sbjct: 870 QLSSGFPNPAVAEAYLKP--VVDETRGSFIWGKPDVEQIREFCKDHFGWTRTKTDEILLP 927
Query: 329 XXXXXXXXSSQGRLESFFKPVANTSAPIK 357
+Q R++SFF+ + IK
Sbjct: 928 VIKQLNLQQTQLRIDSFFRLAQHEKQVIK 956
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 167 (63.8 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 42/127 (33%), Positives = 64/127 (50%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
D + L G+P +E+P EAEAQC L + G V V S+D D FGA RH+ +
Sbjct: 471 DLQEFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNR 530
Query: 201 RKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
R E A + L + +I + +LSG DYC + +G AL+L+ ++ +E
Sbjct: 531 RVQRYGEQTTANRDNCKLFCLQREDYISIALLSGGDYCAGLVKVGAIGALELVSEY--VE 588
Query: 259 TILENIN 265
++N N
Sbjct: 589 CRIDNTN 595
Score = 129 (50.5 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 42/125 (33%), Positives = 62/125 (49%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL K++ A E E G+K+AID S+ IYQ L + +
Sbjct: 1 MGITGLWKIVEPTAT----EIPLECLEGKKLAIDVSIWIYQ----------AQLAYPSDQ 46
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDG-QPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
HL+ + R +LL ++P++VFDG Q P LK+Q L R KR + D L + + G
Sbjct: 47 PFPHLRLLVNRLSKLLFYKIRPVFVFDGPQVPPLKRQVLEARRQKRQNDDDILKNSKKMG 106
Query: 120 NKEDI 124
++I
Sbjct: 107 KLKEI 111
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 247 ALKLIRQHGSIETILENINRER 268
A K IRQH ET+ + E+
Sbjct: 358 ARKRIRQHYGTETVEDKKEEEK 379
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 213 (80.0 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 46/143 (32%), Positives = 80/143 (55%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 712 QEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDD 771
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAK-ILEELNLTMDQFIDLCILSGCDYCDSI 239
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 772 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 827
Query: 240 RGIGGQTALKLIRQHGSIETILE 262
+GIG A++++ + G++E E
Sbjct: 828 KGIGPVQAMEILAEFGNLEKFKE 850
Score = 148 (57.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 49/180 (27%), Positives = 87/180 (48%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAG 59
MG+ L K++ A + + E+ +K+AIDAS+ IYQFL + + G +
Sbjct: 1 MGVHSLWKIVGPTA----RPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSL------ 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR---ADATDDLAEAV 116
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R +++ + A+ +
Sbjct: 51 -PSSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSESRQETAQKL 109
Query: 117 EAGN-KEDIEKFSKRTVKVTKQH-NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
A + + E R+ K + N D ++ +P+ + E+ + + + Y
Sbjct: 110 LAIQLQREAENALNRSKKPSNNTTNGDDDDVIYFEDLPINKPERESSTPSSIVYRKNDEY 169
Score = 79 (32.9 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
+++L+ I + + +P+ +P + + + PEV +D+ + Q W PD + + +FL+
Sbjct: 870 KSLLDRIKKGKLYLPDSFPDKVVEQAYMSPEVDSDKTEFQ--WGVPDLDQIRSFLM 923
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 213 (80.0 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 46/143 (32%), Positives = 80/143 (55%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 712 QEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDD 771
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAK-ILEELNLTMDQFIDLCILSGCDYCDSI 239
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 772 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 827
Query: 240 RGIGGQTALKLIRQHGSIETILE 262
+GIG A++++ + G++E E
Sbjct: 828 KGIGPVQAMEILAEFGNLEKFKE 850
Score = 148 (57.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 49/180 (27%), Positives = 87/180 (48%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAG 59
MG+ L K++ A + + E+ +K+AIDAS+ IYQFL + + G +
Sbjct: 1 MGVHSLWKIVGPTA----RPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSL------ 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR---ADATDDLAEAV 116
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R +++ + A+ +
Sbjct: 51 -PSSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSESRQETAQKL 109
Query: 117 EAGN-KEDIEKFSKRTVKVTKQH-NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
A + + E R+ K + N D ++ +P+ + E+ + + + Y
Sbjct: 110 LAIQLQREAENALNRSKKPSNNTTNGDDDDVIYFEDLPINKPERESSTPSSIVYRKNDEY 169
Score = 79 (32.9 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
+++L+ I + + +P+ +P + + + PEV +D+ + Q W PD + + +FL+
Sbjct: 870 KSLLDRIKKGKLYLPDSFPDKVVEQAYMSPEVDSDKTEFQ--WGVPDLDQIRSFLM 923
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 218 (81.8 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 65/198 (32%), Positives = 98/198 (49%)
Query: 59 GEVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G VT HL+ +F R G+K ++V +G+ P LK ++KR R A+
Sbjct: 3 GVVTKPHLRNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGAS-------- 54
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
NK + + + + K + +C +LL+ +GVP V+A EAEA CA L G V
Sbjct: 55 --NKHGVARTGRSSFKSILK---ECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCI 109
Query: 178 SEDMDSLTFGAPRFLRHLMDPS--SRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCD 234
+ D D +GA R+ S S K P ++ + ++ I E+L + I L +L GCD
Sbjct: 110 TNDGDVFLYGAQTVYRNFAMNSKLSFKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCD 169
Query: 235 YCDS-IRGIGGQTALKLI 251
Y I G+G + ALKLI
Sbjct: 170 YLPKGIPGVGKEQALKLI 187
>SGD|S000002671 [details] [associations]
symbol:DIN7 "Mitochondrial nuclease functioning in DNA repair
and replication" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS;IDA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
SGD:S000002671 GO:GO:0005739 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 EMBL:BK006938 GO:GO:0004519 EMBL:Z70202
EMBL:Z68290 GO:GO:0004518 RefSeq:NP_010553.3 GeneID:851860
KEGG:sce:YDR267C EMBL:X90707 PIR:S61118 RefSeq:NP_010549.3
ProteinModelPortal:Q12086 SMR:Q12086 DIP:DIP-5214N IntAct:Q12086
MINT:MINT-493226 STRING:Q12086 EnsemblFungi:YDR263C GeneID:851856
KEGG:sce:YDR263C CYGD:YDR263c eggNOG:COG0258
GeneTree:ENSGT00510000047676 OrthoDB:EOG44QX8J NextBio:969788
Genevestigator:Q12086 GermOnline:YDR263C PANTHER:PTHR11081
SUPFAM:SSF47807 Uniprot:Q12086
Length = 430
Score = 235 (87.8 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 73/271 (26%), Positives = 131/271 (48%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL L + K+ + Y + +AID +++ E++ N+
Sbjct: 1 MGIPGLLPQLK----RIQKQVSLKKYMYQTLAIDGYAWLHRASCACA---FELVMNKP-- 51
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV-EA 118
+LQ F + ++LL+ +KP VFDG +K +R KR + + +A+ + A
Sbjct: 52 TNKYLQ-FFIKRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLE-NEMIAKKLWSA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN+ + ++ +++V +T + KL +P + AP EA+ Q L K G + + S
Sbjct: 110 GNRYNAMEYFQKSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIIS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCDY 235
ED D L FG + L D + + + + + + + E L+ QF +L L+GCDY
Sbjct: 170 EDSDLLVFGCKTLITKLND-QGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAGCDY 228
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINR 266
I +G TA+K+++++ ++ IL I R
Sbjct: 229 TSGIWKVGVVTAMKIVKRYSEMKDILIQIER 259
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 239 (89.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 87/294 (29%), Positives = 139/294 (47%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL L P S++ Y G +AID Y +L + L G
Sbjct: 1 MGIQGLLPQLKPIQNPVSLRR-----YEGEVLAIDG----YAWLHRAACSCAYELA--MG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T F + LL+ ++P VFDG +KK +KR KR + +AE + A
Sbjct: 50 KPTDKYLQFFIKRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKE-NKAIAERLWA 108
Query: 119 -GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G K++ + ++ V +T + KL G+ + AP EA++Q L + V +
Sbjct: 109 CGEKKNAMDYFQKCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGII 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCD 234
SED D L FG R + L D + + K+ ++ +LT ++ I + LSGCD
Sbjct: 169 SEDSDLLVFGCRRLITKLND-YGECLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCD 227
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFK 285
Y + I +G TA+KL+R+ +IE I+ +I RE + IP+ + Y+ A F+
Sbjct: 228 YTNGIPKVGLITAMKLVRRFNTIERIILSIQREGKLMIPDTYINEYEAAVLAFQ 281
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 239 (89.2 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 82/276 (29%), Positives = 128/276 (46%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L + + + G+K+AID + + + L VV + +
Sbjct: 1 MGVKELWGVLTPHCER----KPINELRGKKVAIDLAGWVCESLNVV-----DYFVHPR-- 49
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSK--RADATDDLAEAVEA 118
HL+ +F RT L+ + P++V +G P LK Q +AKR R + E ++
Sbjct: 50 --HHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQS 107
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
+ +K R V KQ C+ LL MG+ V+ P EAEA CA L K G V V S
Sbjct: 108 QPSKG-DKGRSRFNHVLKQ----CETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVIS 162
Query: 179 EDMDSLTFGAPRFLRHL-MDPSSRKIP----VMEFEVAKILEELNLTMDQFIDLCILSGC 233
+D D +GA R R+ + + V +++ +I ++ + I + +L GC
Sbjct: 163 QDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGC 222
Query: 234 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRER 268
DYC D I GIG LKL ++ E IL+ + R
Sbjct: 223 DYCPDGIGGIGKDGVLKLFNKYKETE-ILDRMRSWR 257
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 239 (89.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 85/284 (29%), Positives = 135/284 (47%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL + L + A + + +K++ G+ +A+D Y +L E L GE
Sbjct: 1 MGIQGLLQFLKE-ASEPVHVKKYK---GKTVAVDT----YCWLHKGAFACAEKLAK--GE 50
Query: 61 VTS-HLQGMFTRTIRLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T ++Q LL G+KPI VFDG P K E A+R KR + +
Sbjct: 51 PTDQYVQFCMKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARR-EKRQTNLQKGKQLLRE 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + + R+V +T + + + GV + AP EA++Q A L K+ A+ +
Sbjct: 110 GKLAEARECFSRSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDP--SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ED D L FG + L MD + +I F + + L ++ T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVLLK-MDKFGNGLEIDQARFGMCRSLGDV-FTEEKFRYMCILSGCDYL 227
Query: 237 DSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
SI GIG A KL++ + I +++ I + +PE +
Sbjct: 228 PSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGY 271
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 238 (88.8 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 81/278 (29%), Positives = 136/278 (48%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ GL ++L + P S+ E Y G+ +AID +++ L+ + E L G
Sbjct: 1 MGVNGLLQILREIQDPCSL-----ERYRGQTLAIDTYGWLHRALV----SCAEELC--LG 49
Query: 60 EVT-SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA-VE 117
+ T +++ + + L G+ P +VFDG K++ +R KR +A + LAE +
Sbjct: 50 KPTRNYITAILNKIQMLNHFGITPYFVFDGASLPTKQETNRERQLKRQEAKE-LAEKYIA 108
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
A N++ K + VT Q L + + + AP EA+ Q L K G V +
Sbjct: 109 ANNRKLAYKQFMKAAYVTSQMAKSVMCELDNLSIKYIVAPYEADPQMVYLEKMGIVDGIL 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSR-KIPVMEFEVAKILEELN-LTMDQFIDLCILSGCDY 235
SED D L FG + + L D + +I +F+ K + LN M+Q + +LSGCDY
Sbjct: 169 SEDSDLLIFGCKKLITKLKDDGTCVEINRDKFDKVKEIPYLNQYNMEQLRLVAMLSGCDY 228
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPE 273
+ GIG +TA +L+R++ + I+ + +IP+
Sbjct: 229 TKGVPGIGLKTAFQLVRKYNNFTKIMIALRSMGKKIPD 266
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 216 (81.1 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 75/265 (28%), Positives = 123/265 (46%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ L ++L P S+ K G+ +A+D + Y ++ RT +
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLK-----GKTLAVDLRFT-YMYICYKNRTCLKRSAYPLL 54
Query: 60 EVTS---HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
+T +L+ +F R G+K ++V +G+ P LK ++KR R A+
Sbjct: 55 PMTKIQLNLENLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGAS------- 107
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
NK + + + + K + +C +LL+ +GVP V+A EAEA CA L G V
Sbjct: 108 ---NKHGVARTGRSSFKSILK---ECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGC 161
Query: 177 ASEDMDSLTFGAPRFLRH--LMDPSSRKI------PVME-FEVAKILEELNLTMDQFIDL 227
+ D D +GA R+ + SS+K P ++ + ++ I E+L + I L
Sbjct: 162 ITNDGDVFLYGAQTVYRNFAMNSKSSQKCTWKLKEPHLDCYTMSSIKEKLGCDRESLIGL 221
Query: 228 CILSGCDYCDS-IRGIGGQTALKLI 251
+L GCDY I G+G + ALKLI
Sbjct: 222 AVLLGCDYLPKGIPGVGKEQALKLI 246
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 169 (64.5 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 44/132 (33%), Positives = 69/132 (52%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + + LL+L G+P +EAP EAEAQCA L + Q ++D D FGA +
Sbjct: 781 VTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYK 840
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
+ SR V ++ +L L + I+L L G DY + I +G TA++++ +
Sbjct: 841 NFF---SRNKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEILNE 897
Query: 254 ---HGSIETILE 262
HG +E +L+
Sbjct: 898 FPGHG-LEPLLK 908
Score = 123 (48.4 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + E G+ +A+D S+ + Q + V + N
Sbjct: 1 MGVQGLWKLL-ECTGRPVNPETLE---GKILAVDISIWLNQAVKGVRDRHGNTIQN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
+HL +F R +LL ++P++VFDG+ P LK+Q LAKR ++ A D + E
Sbjct: 53 --AHLLTLFNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAE 107
Score = 40 (19.1 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
Q+ +P + +P V DE + W PD E + + + G+
Sbjct: 939 QLSSGFPNPAVAEAYLKP--VVDETRGSFIWGKPDVEQIREYPFNHFGW 985
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 238 (88.8 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 83/298 (27%), Positives = 139/298 (46%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA-- 58
MGI GL L+ P + K + Y +++AID Y +L G + E
Sbjct: 1 MGISGLLPALS---PVT-KAIHVKDYANKRVAIDG----YSWL----HKGAYSCSQEIVL 48
Query: 59 GEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G T + F I++L + + P+ +FDG P KK + +R R + + +
Sbjct: 49 GIPTRNYINYFISRIKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLL 108
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
GNK ++ V +T + + L+ + V + AP EA+AQ L +GQV A+
Sbjct: 109 EGNKSQANICFQKAVDITPRMAFLLIKELRALKVEYLVAPYEADAQLTYLSITGQVDAII 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPS--SRKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGC 233
+ED D + FGA + MD +++I + K + ++ +CILSGC
Sbjct: 169 TEDSDLVAFGATHII-FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGC 227
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARRLFKEPEV 289
DY S+ G+G +T+ KL++QH IE + + + RE+ +++ Q +A FK V
Sbjct: 228 DYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQFYKADFTFKHQRV 285
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 234 (87.4 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 78/249 (31%), Positives = 117/249 (46%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+K+AID + + + L VV + + HL+ +F RT L+ + P++V +
Sbjct: 24 GKKVAIDLAGWVCESLNVV-----DYFVHPR----HHLKNLFFRTCYLIWEQVTPVFVLE 74
Query: 88 GQPPDLKKQELAKRYSK--RADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 145
G P LK Q +AKR R D A + K ++K R V KQ C+ L
Sbjct: 75 GVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAK--VDKGRTRFNHVLKQ----CETL 128
Query: 146 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL-MDPSSRKIP 204
L MG+ V+ P EAEA A L K G V V S+D D +GA R R+ + +
Sbjct: 129 LLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNFSVSTQGAQAA 188
Query: 205 ----VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIET 259
V +++ +I ++ + I + +L GCDYC D I GIG LKL ++ E
Sbjct: 189 AGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKESE- 247
Query: 260 ILENINRER 268
IL+ + R
Sbjct: 248 ILDRLRNWR 256
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 168 (64.2 bits), Expect = 8.8e-16, Sum P(3) = 8.8e-16
Identities = 47/139 (33%), Positives = 74/139 (53%)
Query: 129 KRTVK-VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
+RT VT Q + + LL+L G+P +EAP EAEAQCA L + Q ++D D FG
Sbjct: 1174 ERTAATVTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFG 1233
Query: 188 APRFLRHLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
A RH+ K +E+ + +L L ++ I+L L G DY + I +G T
Sbjct: 1234 A----RHVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVT 1289
Query: 247 ALKLIRQ---HGSIETILE 262
A++++ + HG +E +L+
Sbjct: 1290 AMEILNEFPGHG-LEPLLK 1307
Score = 108 (43.1 bits), Expect = 8.8e-16, Sum P(3) = 8.8e-16
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 122
+HL +F R +LL ++PI+VFDG P LKKQ LAKR ++ A D + E K
Sbjct: 478 AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAATDSRKTTEKLLKT 537
Query: 123 DIEKFSKRTVKVTKQ 137
+++ + +T +K+
Sbjct: 538 FLKRQAIKTALKSKR 552
Score = 48 (22.0 bits), Expect = 8.8e-16, Sum P(3) = 8.8e-16
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXX 327
+ Q+ +P + +P V D+ + W PD + + F G+N +
Sbjct: 1336 KLQLTPGFPNPAVADAYLKP--VVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 1393
Query: 328 X-XXXXXXXXSSQGRLESFFK 347
+Q R++SFF+
Sbjct: 1394 FPVLKQLNAQQTQLRIDSFFR 1414
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 163 (62.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 43/126 (34%), Positives = 66/126 (52%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + + LL+L G+P +EAP EAEAQCA L + Q ++D D FGA R
Sbjct: 1194 VTGQMFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGA----R 1249
Query: 194 HLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
H+ K +E+ + +L L ++ I+L L G DY + I +G TA++++
Sbjct: 1250 HVYKNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILN 1309
Query: 253 Q---HG 255
+ HG
Sbjct: 1310 EFPGHG 1315
Score = 108 (43.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 122
+HL +F R +LL ++PI+VFDG P LKKQ LAKR K+ A D E +
Sbjct: 477 AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSKTTTE----K 532
Query: 123 DIEKFSKRTV 132
++ F KR V
Sbjct: 533 LLKTFLKRQV 542
Score = 52 (23.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 20/103 (19%), Positives = 37/103 (35%)
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXX 327
+ Q+ +P + +P V DE + W PD + + F G+N +
Sbjct: 1350 KLQLTPGFPNPAVADAYLKP--VVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESL 1407
Query: 328 X-XXXXXXXXSSQGRLESFFKPVANTSAPIKRKEPENTPKATT 369
+Q R++SFF+ K + + +A T
Sbjct: 1408 FPVLKQLNVHQTQLRIDSFFRLAQQEKQEAKGIKSQRLNRAVT 1450
>FB|FBgn0015553 [details] [associations]
symbol:tos "tosca" species:7227 "Drosophila melanogaster"
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=NAS] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 GO:GO:0048256 GO:GO:0045145 EMBL:X89021 EMBL:X89022
EMBL:AY051794 EMBL:BT058042 RefSeq:NP_477145.1 UniGene:Dm.4197
ProteinModelPortal:Q24558 SMR:Q24558 IntAct:Q24558 MINT:MINT-297328
STRING:Q24558 PRIDE:Q24558 EnsemblMetazoa:FBtr0081131 GeneID:35119
KEGG:dme:Dmel_CG10387 UCSC:CG10387-RA CTD:35119 FlyBase:FBgn0015553
InParanoid:Q24558 OMA:LAKACKF OrthoDB:EOG42JM78 PhylomeDB:Q24558
GenomeRNAi:35119 NextBio:791961 Bgee:Q24558 GermOnline:CG10387
GO:GO:0051908 Uniprot:Q24558
Length = 732
Score = 217 (81.4 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 88/320 (27%), Positives = 139/320 (43%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL + K+ + + G +A+D +++ V G E L GE
Sbjct: 1 MGITGLIPFVG----KASSQLHLKDIRGSTVAVDTYCWLHKG--VFGCA--EKLAR--GE 50
Query: 61 VTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T ++Q LL +KPI VFDGQ K +R R + + AE + G
Sbjct: 51 DTDVYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLK---LMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E+ +R V VT +D RL++ V + AP EA+AQ A L ++ +
Sbjct: 111 RIEEARSHMRRCVDVT---HDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYI 167
Query: 177 ASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
+ED D FGA + L ++ S + + +A E D+F +CILSGCDY
Sbjct: 168 ITEDSDLTLFGAKNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLI---RQHG---SIETILENINRERYQIPEDW--PYQEARRLFKEP 287
DS+ GIG A K I Q +++ I +N ++ +D+ + +A F+
Sbjct: 228 LDSLPGIGLAKACKFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHM 287
Query: 288 EVVTD-EEQLQIKWSAPDEE 306
+ E ++Q + D E
Sbjct: 288 FIYNPLERRMQRLCALEDYE 307
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 218 (81.8 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 62/205 (30%), Positives = 102/205 (49%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL+ +F R L + +K ++V +G+PP LK ++KR R ++ K
Sbjct: 52 HLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSS----------GKSW 101
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
+K + K + +C +L+ +G+P V+A EAEA CA L G V + D D+
Sbjct: 102 SQKTGRSHFKSVLR---ECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDT 158
Query: 184 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 241
+GA R+ + K P ++ + ++ I +L L D + L IL GCDY + G
Sbjct: 159 FLYGAQTVYRNFT--MNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPG 216
Query: 242 IGGQTALKLIRQHGSIETILENINR 266
+G + ALKLI Q +++L+ NR
Sbjct: 217 VGKEQALKLI-QILKGQSLLQRFNR 240
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 218 (81.8 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL+ +F R L + +K ++V +G+PP LK ++KR R + K
Sbjct: 52 HLRNLFFRISYLTQMNVKLVFVMEGEPPMLKADVISKRTQTRYGPS----------GKSR 101
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
+K + K + +C +L+ +G+P V+A EAEA CA L SG V + D D+
Sbjct: 102 SQKTGRSHFKSVLR---ECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDA 158
Query: 184 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 241
+GA R+ + K P ++ + ++ I +L L D + L +L GCDY + G
Sbjct: 159 FLYGAQTVYRNFT--MNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPG 216
Query: 242 IGGQTALKLIRQHGSIETILENINR--ER--YQIPEDWP 276
+G + ALKL++ +++L+ N+ E Y +P+ P
Sbjct: 217 VGKEQALKLLQIFKG-QSLLQRFNQWIEDPCYSVPQSAP 254
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 215 (80.7 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 81/330 (24%), Positives = 146/330 (44%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L + + P + + Y G+++ IDA +++ E+ + G+
Sbjct: 1 MGIKDLLRFMK---PYILPIH-IQKYAGKRVGIDAYSWLHKGAY---SCSMELCLDTDGK 53
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
F + LL+ + P+ V DG K +R+ KR D ++ G
Sbjct: 54 KKLRYIDYFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKEG 113
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----KSGQVYA 175
N + +R V VT ++LK V + AP EA+AQ A L + G + A
Sbjct: 114 NVAAATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAA 173
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL----NLTMDQFIDLCILS 231
V +ED D L +G + MD + ++ V + +++ N + F +C+L+
Sbjct: 174 VITEDSDLLAYGCKAVI-FKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLA 232
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ-IPEDWP--YQEARRLFKEPE 288
GCD+ S+ G+G A I ++ S+E +L + ++ + +P+D+ + EA +F+
Sbjct: 233 GCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHAR 292
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
V D + ++K P L+N V + F
Sbjct: 293 VY-DFDAKKLKHLKPLSHNLLNLPVEQLEF 321
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 215 (80.7 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 64/216 (29%), Positives = 106/216 (49%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL+ +F R L + +K ++V +G+PP LK + KR R + K
Sbjct: 52 HLRNLFFRISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPS----------GKSR 101
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
+K + K + +C +L+ +G+P V+A EAEA CA L SG V + D D+
Sbjct: 102 SQKTGRSHFKSVLR---ECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDA 158
Query: 184 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 241
+GA R+ + K P ++ + V+ I +L L D + L +L GCDY + G
Sbjct: 159 FLYGAQTVYRNFT--MNTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPG 216
Query: 242 IGGQTALKLIRQHGSIETILENINR--ER--YQIPE 273
+G + ALKL+ Q +++L+ N+ E Y +P+
Sbjct: 217 VGKEQALKLL-QILKGQSLLQRFNQWTEEPGYSVPQ 251
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 205 (77.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 60/191 (31%), Positives = 95/191 (49%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL+ +F R L +K ++V +G+PP LK ++KR R + + + G
Sbjct: 52 HLRNLFFRISYLTLMDVKLVFVMEGEPPHLKADVISKRNQVRYGPSGK-TWSQKTGRSH- 109
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
F K +K +C +L+ +G+P V+A EAEA CA L SG V + D D+
Sbjct: 110 ---F-KSVLK-------ECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDA 158
Query: 184 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 241
+GA R+ + K P ++ + ++ I +L L D + L IL GCDY + G
Sbjct: 159 FLYGAQTVYRNFT--MNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPG 216
Query: 242 IGGQTALKLIR 252
+G + ALKLI+
Sbjct: 217 VGKEQALKLIK 227
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 203 (76.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 60/191 (31%), Positives = 95/191 (49%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL+ +F R L +K ++V +G+PP LK +++R R + + +AG
Sbjct: 52 HLRNLFFRISYLTLMDVKLVFVMEGEPPKLKADVISRRNQIRYGPSGK-TWSQKAGRSH- 109
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
F K +K +C +L+ +G+P V+A EAEA CA L SG V + D D+
Sbjct: 110 ---F-KSVLK-------ECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDA 158
Query: 184 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 241
+GA R+ + K P ++ + + I +L L D + L IL GCDY + G
Sbjct: 159 FLYGAQTVYRNFT--MNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPG 216
Query: 242 IGGQTALKLIR 252
+G + ALKLI+
Sbjct: 217 VGKEQALKLIQ 227
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 199 (75.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 60/198 (30%), Positives = 96/198 (48%)
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+K ++V +G+ P LK ++KR R A+ NK + + + + K +
Sbjct: 2 GIKLVFVMEGEAPKLKADTMSKRNEIRYGAS----------NKHGVARTGRSSFKSILK- 50
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+C +LL+ +GVP V+A EAEA CA L G V + D D +GA R+
Sbjct: 51 --ECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMN 108
Query: 199 SSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRGIGGQTALKLIRQHGS 256
S K P ++ + ++ I E+L + I L +L GCDY I G+G + ALKLI
Sbjct: 109 S--KEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRG 166
Query: 257 IETILENINRERYQIPED 274
+ +L+ + + Q D
Sbjct: 167 -QNLLQRFEQWKEQSEHD 183
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 194 (73.4 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 61/205 (29%), Positives = 99/205 (48%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL+ +F R L +K ++V +G+PP LK + KR R + +K
Sbjct: 52 HLRNLFFRISCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGKTWS-----HKTG 106
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
F K +K +C +L+ +G+P V+A EAEA CA L +G V + D D+
Sbjct: 107 RSHF-KSVLK-------ECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDA 158
Query: 184 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 241
+GA R+ + K P ++ + ++ I L L D + L IL GCDY + G
Sbjct: 159 FLYGAQTVYRNFT--MNTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPG 216
Query: 242 IGGQTALKLIRQHGSIETILENINR 266
+G + ALKLI+ +++L+ N+
Sbjct: 217 VGKEQALKLIKTLKG-QSLLQRFNQ 240
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 194 (73.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 49/162 (30%), Positives = 81/162 (50%)
Query: 93 LKKQELAKRYSKRADATDDLAEAVEAGNKE-DIEKF--SKRTVKVTKQHNDDCKRLLKLM 149
+K A + K ++ +LA + KE +IE+ + + ++++ + DC+ LL+L
Sbjct: 832 IKDAAEALKSQKTSEELQELATNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLF 891
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
G+P + AP EAEAQCA L + + ++D D FG ++ + VMEF
Sbjct: 892 GIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNKH---VMEFR 948
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+I + N + I L L G DY I GIG TAL+++
Sbjct: 949 AEQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEIL 990
Score = 42 (19.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
++ E +P + P + D+ + W PD E + F G+ + +
Sbjct: 1045 ELHEGFPSGAVVEAYLAPTI--DDNRDAFSWGTPDVESIREFTRKSFGWTTSK 1095
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 144 (55.7 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 47/135 (34%), Positives = 72/135 (53%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + + E G+ +A+D S+ + Q L V + N
Sbjct: 1 MGVQGLWKLL-ECSGRQVNPETLE---GKILAVDISIWLNQALKGVRDRHGNSIEN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL +F R +LL ++PI+VFDG P LKKQ LAKR ++ ATDD + E
Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDLATDDSKKTTE--- 107
Query: 121 KEDIEKFSKRTVKVT 135
+ ++ F KR V T
Sbjct: 108 -KLLKTFLKRQVVKT 121
Score = 37 (18.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 245 QTALKLIRQHGSIETILENIN 265
+TALK RQ G+ N+N
Sbjct: 120 KTALKSKRQEGNYIPFKVNVN 140
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 191 (72.3 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 45/138 (32%), Positives = 77/138 (55%)
Query: 114 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
E V G+++ K + V+ + +C+ LL++ G+P + AP EAEAQCA + +S V
Sbjct: 903 EFVSLGDEQ--RKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLV 960
Query: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
+ ++D D FGA +++ D RK V + + I +EL L+ D+ I + +L G
Sbjct: 961 DGIVTDDSDVFLFGARSVYKNIFD--DRKY-VETYFMKDIEKELGLSRDKIIRMAMLLGS 1017
Query: 234 DYCDSIRGIGGQTALKLI 251
DY + I GIG A++++
Sbjct: 1018 DYTEGISGIGIVNAIEVV 1035
Score = 154 (59.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 50/159 (31%), Positives = 80/159 (50%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL +LLA P + E+ +++AIDAS+ + QF+ + +M+ N
Sbjct: 1 MGVQGLWELLA---PVG-RRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL---AEAVE 117
+HL G F R +LL KPI+VFDG P LK++ + R +R +A + AE +
Sbjct: 53 --AHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLL 110
Query: 118 AGNKEDIE-KFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
+DI K + +K + DD R+ K + VE
Sbjct: 111 LNRLKDIRLKEQAKDIKNQRLKQDDSDRVKKRVSSDSVE 149
Score = 45 (20.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 197 DPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
D + +PV EF A I EE+ + +F+ L
Sbjct: 878 DFEEKGVPV-EFSEANIEEEIRVLDQEFVSL 907
Score = 40 (19.1 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 8 KLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQF 42
KL+A+N K K +K F ++ I+A + F
Sbjct: 302 KLMAENRQKYQKVKKAPEKFS-ELQIEAYLKTVAF 335
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 182 (69.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 61/245 (24%), Positives = 108/245 (44%)
Query: 15 PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIR 74
P M+ ++ ES G I + + +S + T + +A E L+ +R
Sbjct: 640 PMEMESEESESD-GSFIEVQSVVSNSELQTESSEASTHLSEKDAEEPRETLEEGTSRDTE 698
Query: 75 LLEAGMKPIYVFDG-QPPDLKKQELAKRYS----KRADATDDLAEAVEAGNKEDIEKFSK 129
L I +G + D+ +++ + + DA + A + K ++ +
Sbjct: 699 CLLQDSSDIEAMEGHREADIDAEDMPNEWQDINLEELDALESNLLAEQNSLKAQKQQQDR 758
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
VT Q + + LL+L GVP ++AP EAEAQCA L + Q ++D D FGA
Sbjct: 759 IAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGA- 817
Query: 190 RFLRHLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTAL 248
RH+ K +E+ + +L L ++ I+L L G DY + I +G TA+
Sbjct: 818 ---RHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAM 874
Query: 249 KLIRQ 253
+++ +
Sbjct: 875 EILNE 879
Score = 140 (54.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 43/138 (31%), Positives = 74/138 (53%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + E G+ +A+D S+ + Q L V + ++ N
Sbjct: 1 MGVQGLWKLLECSGHR-VSPEALE---GKVLAVDISIWLNQALKGVRDSHGNVIEN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL +F R +LL ++PI+VFDG P LKKQ LAKR ++ A+ D + E
Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTEKLL 110
Query: 121 KEDIEKFSKRTVKVTKQH 138
K +++ + +T + +H
Sbjct: 111 KTFLKRQALKTAFRSSRH 128
Score = 47 (21.6 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 16/81 (19%), Positives = 30/81 (37%)
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXX 327
+ Q+ +P + P V D+ + W PD + + F G+N +
Sbjct: 919 KLQLTPGFPNPAVADAYLRP--VVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESL 976
Query: 328 X-XXXXXXXXSSQGRLESFFK 347
+Q R++SFF+
Sbjct: 977 YPVLKHLNAHQTQLRIDSFFR 997
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 185 (70.2 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 66/232 (28%), Positives = 105/232 (45%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + + LL+L GVP +EAP EAEAQCA L S Q ++D D FGA R
Sbjct: 1152 VTGQMFLESQELLRLFGVPYIEAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGA----R 1207
Query: 194 HLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
H+ K +E+ + +L L ++ I+L L G DY + I +G TA++++
Sbjct: 1208 HVYKNFFNKNKFVEYYQYVDFHSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILN 1267
Query: 253 Q---HGSIETILENIN----RERYQIPEDWPY-----QEARRLFKEPEV----VTDEEQL 296
+ HG +E +L+ ++ Q PY ++ R+L P V D+ +
Sbjct: 1268 EFPGHG-LEPLLKFSEWWHEAQKNQKLRPNPYDTKVKKKLRKLQLAPXAYLRPVVDDSRG 1326
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTXXXX-XXXXXXXXSSQGRLESFFK 347
W PD + + F G+N + +Q R++SFF+
Sbjct: 1327 AFLWGTPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLNAQQTQLRIDSFFR 1378
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 165 (63.1 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 52/186 (27%), Positives = 92/186 (49%)
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAG-----NKEDIEKFSKRTVK--VTKQHN 139
DG+P + +K + + ++L E +E+ N +K + + VT Q
Sbjct: 711 DGEPQEAEKDAEDSLHEWQDINLEEL-ETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 769
Query: 140 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPS 199
+ + LL+L G+P ++AP EAEAQCA L + Q ++D D FGA R+ + +
Sbjct: 770 LESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKN 829
Query: 200 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ---HGS 256
K V ++ +L L ++ I+L L G DY + I +G TA++++ + HG
Sbjct: 830 --KF-VEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHG- 885
Query: 257 IETILE 262
+E +L+
Sbjct: 886 LEPLLK 891
Score = 127 (49.8 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 42/137 (30%), Positives = 71/137 (51%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + + E G+ +A+D S+ + Q L V + N
Sbjct: 1 MGVQGLWKLL-ECSGRQVSPEALE---GKILAVDISIWLNQALKGVRDRHGNSIENP--- 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
HL +F R +LL ++PI+VFDG P LKKQ L KR ++ A+ D + E
Sbjct: 54 ---HLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL 110
Query: 121 KEDIEKFSKRTVKVTKQ 137
K +++ + +T +K+
Sbjct: 111 KTFLKRQAIKTAFRSKR 127
Score = 58 (25.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 20/101 (19%), Positives = 37/101 (36%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTXXXX- 328
Q+ +P + +P V D+ + W PD + + F G+N +
Sbjct: 922 QLTPGFPNPAVAEAYLKP--VVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 979
Query: 329 XXXXXXXXSSQGRLESFFKPVANTSAPIKRKEPENTPKATT 369
+Q R++SFF+ KR + + +A T
Sbjct: 980 VLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVT 1020
>GENEDB_PFALCIPARUM|PF07_0105 [details] [associations]
symbol:PF07_0105 "exonuclease i, putative"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0006298 "mismatch repair" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 EMBL:AL844506 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 174 (66.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 66/276 (23%), Positives = 126/276 (45%)
Query: 5 GLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSH 64
G++ LL P +K Y + +D I++ LI +++T++ + S+
Sbjct: 2 GISNLLQFLKP-IIKNSHISKYKNEVVGVDIMCWIHRGLI---SCAYDIVTDQYND--SY 55
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAV-EAGNKE 122
L + + + +K ++VFDG+ P+ KK+ + ++ ++R A +L E + + N
Sbjct: 56 LNFIEKMLVPIYNHNIKVVFVFDGEELPEKKKENMIRK-NRREKAKMELQEIISKVKNPR 114
Query: 123 DIEKFSKRTVK---VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
E K+ ++ V+K+ D K + + + +P EA+AQ + LC+ G + SE
Sbjct: 115 TNEMVLKKCIQAISVSKEIIDSVKEFCRKKNIDYIISPYEADAQLSYLCRMGFISCAISE 174
Query: 180 DMDSLTFGAPRFLRHLMDPSS-RKIPVMEFE-------VAKILEELNLTMDQFIDLCI-- 229
D D L +G PR L L + +I +M + KI L+ + ++F I
Sbjct: 175 DSDLLVYGCPRVLYKLKNTGECNEISLMPINDLIDWNVINKIKNPLSNSYNEFYITPIKK 234
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 265
L D DS + +T+++ I ++ E IN
Sbjct: 235 LQNSDDYDSDISLDEETSVECINNDSYVQNNNEFIN 270
>UNIPROTKB|Q8IBK1 [details] [associations]
symbol:PF07_0105 "Exonuclease I, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 EMBL:AL844506
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746 RefSeq:XP_001349153.1
ProteinModelPortal:Q8IBK1 IntAct:Q8IBK1 MINT:MINT-1547666
EnsemblProtists:PF07_0105:mRNA GeneID:2655158 KEGG:pfa:PF07_0105
EuPathDB:PlasmoDB:PF3D7_0725000 Uniprot:Q8IBK1
Length = 1347
Score = 174 (66.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 66/276 (23%), Positives = 126/276 (45%)
Query: 5 GLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSH 64
G++ LL P +K Y + +D I++ LI +++T++ + S+
Sbjct: 2 GISNLLQFLKP-IIKNSHISKYKNEVVGVDIMCWIHRGLI---SCAYDIVTDQYND--SY 55
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAV-EAGNKE 122
L + + + +K ++VFDG+ P+ KK+ + ++ ++R A +L E + + N
Sbjct: 56 LNFIEKMLVPIYNHNIKVVFVFDGEELPEKKKENMIRK-NRREKAKMELQEIISKVKNPR 114
Query: 123 DIEKFSKRTVK---VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
E K+ ++ V+K+ D K + + + +P EA+AQ + LC+ G + SE
Sbjct: 115 TNEMVLKKCIQAISVSKEIIDSVKEFCRKKNIDYIISPYEADAQLSYLCRMGFISCAISE 174
Query: 180 DMDSLTFGAPRFLRHLMDPSS-RKIPVMEFE-------VAKILEELNLTMDQFIDLCI-- 229
D D L +G PR L L + +I +M + KI L+ + ++F I
Sbjct: 175 DSDLLVYGCPRVLYKLKNTGECNEISLMPINDLIDWNVINKIKNPLSNSYNEFYITPIKK 234
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 265
L D DS + +T+++ I ++ E IN
Sbjct: 235 LQNSDDYDSDISLDEETSVECINNDSYVQNNNEFIN 270
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 63/236 (26%), Positives = 100/236 (42%)
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE-AVEAGNKE 122
+L+G F R L+ I V DG P +K +R R + DD E + E K
Sbjct: 53 YLRGFFHRLRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKR 112
Query: 123 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 182
++ +K + K + +G+ ++ EAEAQCA L A S D D
Sbjct: 113 NMGSEFSCIIK-------EAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSD 165
Query: 183 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 242
FGA R + V+ +E+ I ++L L + I L +L G DY +RG+
Sbjct: 166 IFLFGAKTVYREICLGEGGY--VVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGL 223
Query: 243 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
+ A +L+R G ILE + E E P + +++ P V + + L +
Sbjct: 224 RQEKACELVRSIGD-NVILEKVASEGLSFAEK-PRKSKKQV--RPSVCSKKGTLPL 275
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 72/275 (26%), Positives = 116/275 (42%)
Query: 1 MGIKGLTKLLADNAPK-SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL + + K ++ E + G+ +AID S +++ G TG M G
Sbjct: 1 MGISGLLPFVKNACRKGNILELR-----GKSVAIDVSCLLHR-----GLTGC-MDKIHMG 49
Query: 60 EVTSHLQGMFTRTIR-LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
E T + ++ LL G + VFDG+P KK +R R + +
Sbjct: 50 EETQSYVNYVNKYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAK 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM-GVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G + + + ++ ++ + + M V +V AP EA+AQ A L + V AV
Sbjct: 110 GLEREARDTYRLATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVI 169
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAK--ILEELNLTMDQFID---LCILSG 232
+ED D + FG + ++ + V E K EL F+ +CILSG
Sbjct: 170 TEDSDLIVFGC-EMIYFKWQSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRRICILSG 228
Query: 233 CDYCDS-IRGIGGQTALKLIRQHG--SIETILENI 264
CDY + + G+G TA K + T+L +
Sbjct: 229 CDYLQAGLPGVGLSTAAKFFSMTSIKDLRTLLRKV 263
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 150 (57.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 43/120 (35%), Positives = 63/120 (52%)
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
N KR+++L G EAP EAEA+CA L + G V AV SED+D++ FG R LR+
Sbjct: 105 NAMAKRMIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRNWSSE 164
Query: 199 SSR--KIP--VMEFEVAKI-LEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
R K P V ++ A I + L + + + ++SG DY + G G + A + R
Sbjct: 165 GVRGSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACEAAR 224
Score = 54 (24.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 271 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
IP+D+P E R + P V DE ++ S P L
Sbjct: 270 IPDDFPSIEVLRYYTHPVVSQDETLEHLENSFPSNNSL 307
>RGD|1586176 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent repair
deficiency, complementation group 5" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008340 "determination of
adult lifespan" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0009650 "UV protection" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 RGD:1586176
GO:GO:0005634 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
GO:GO:0006289 PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
IPI:IPI00357888 Ensembl:ENSRNOT00000014836 UCSC:RGD:1586176
ArrayExpress:D4A7R1 Uniprot:D4A7R1
Length = 242
Score = 139 (54.0 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 45/137 (32%), Positives = 73/137 (53%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + + E G+ +A+D S+ + Q L G A E
Sbjct: 1 MGVQGLWKLL-ECSGRPVSPEALE---GKVLAVDISIWLNQAL-----KGVRDRHGNAIE 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL +F R +LL ++PI+VFDG P LKKQ LAKR K+ A+ D + E
Sbjct: 52 -NAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQKKDSASIDSRKTTEKLL 110
Query: 121 KEDIEKFSKRTVKVTKQ 137
K +++ + +T +K+
Sbjct: 111 KTFLKRQALKTAFRSKR 127
>CGD|CAL0001028 [details] [associations]
symbol:orf19.652 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00484 SMART:SM00485 CGD:CAL0001028 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15339 EMBL:AACQ01000173
RefSeq:XP_711995.1 ProteinModelPortal:Q59QM2 GeneID:3646389
KEGG:cal:CaO19.652 Uniprot:Q59QM2
Length = 684
Score = 143 (55.4 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 61/224 (27%), Positives = 99/224 (44%)
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI 124
+Q + + + L+ + I VFDG LK +L + ++ D+L N +
Sbjct: 63 MQNVMAKILALVGLNISVIVVFDGI---LKPLKLKSKENEGLIYEDELQRLALISNYSEY 119
Query: 125 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 184
F + +K+ +N + V+AP E EAQCA L K G V V S+D+D+L
Sbjct: 120 NPFVVQ-LKIELSNNK----------IEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDAL 168
Query: 185 TFGAPRFLRHLM----D-----PSSRKIP------VMEFEVAKILEELNLTMDQFIDLCI 229
FGA R LR+ D P S I V ++ K+ +E LT + + L
Sbjct: 169 VFGARRVLRNFSRFAEDIGKSPPKSSDITARSSYYVTPVDMDKVEQETGLTTSRLVFLAS 228
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPE 273
L G DY + +G A K + G+ +++ N+ + Q+ E
Sbjct: 229 LRGGDYSVGAKKMGIVNA-KNLALSGTSKSMYYTENKSKIQLKE 271
Score = 38 (18.4 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 271 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
I ED P+ ++ KE E D E+ +K ++ I ++E +S+
Sbjct: 618 IIEDNPFLDSFNSTKEDERNKDNEE--VKQQEEEKSNPIEKTITEESDSSE 666
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 127 (49.8 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 42/137 (30%), Positives = 71/137 (51%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLL + + + + + E G+ +A+D S+ + Q L V + N
Sbjct: 1 MGVQGLWKLL-ECSGRQVSPEALE---GKILAVDISIWLNQALKGVRDRHGNSIENP--- 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
HL +F R +LL ++PI+VFDG P LKKQ L KR ++ A+ D + E
Sbjct: 54 ---HLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL 110
Query: 121 KEDIEKFSKRTVKVTKQ 137
K +++ + +T +K+
Sbjct: 111 KTFLKRQAIKTAFRSKR 127
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 39/132 (29%), Positives = 63/132 (47%)
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP----RFLRHLMDP 198
K L+ L P +AP EAEA+C+ L +G V AV S D+D+L FG+ F +
Sbjct: 107 KILIDLFRFPRHDAPGEAEAECSRLQMAGVVDAVMSNDVDALMFGSGFTVMNFSKEAGSG 166
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQ--FIDLCILSGCDYCDS-IRGIGGQTALKLIRQHG 255
+ V + + + N+ +D+ I +LSG DY S + G + A + I G
Sbjct: 167 AGGATHVTSYRMGDGADS-NVKLDRPGMILFAMLSGGDYLPSGVPKCGSKLAAE-IATAG 224
Query: 256 SIETILENINRE 267
+ +LE + +
Sbjct: 225 FGKDLLEALEAD 236
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESY--FGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA 58
MGI GL L S+ + R I I +SI+ F I GR G
Sbjct: 1 MGIPGLINALGPGERISLSKLAISHLERTSRPIRIAVDISIWLFQIQAGRGGKN------ 54
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ--PP 91
L+ +F R +++L + P++V+DG+ PP
Sbjct: 55 ----PELRTLFFRLLKILALPIHPLFVYDGKDKPP 85
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 349 VANTSAPIKRKEPENTP 365
++N+ +P+KR+ P TP
Sbjct: 587 LSNSGSPVKRR-PATTP 602
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
+IPE +P + + +P VV+ E+Q++
Sbjct: 271 RIPETFPDRTILSYYAKP-VVSSEQQVE 297
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 125 (49.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 53/198 (26%), Positives = 74/198 (37%)
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 122
S+L FTR RLLE + PI VFD S A + D E V +
Sbjct: 52 SYLVTFFTRIQRLLELKIIPIVVFDNI-----------NASSSAHESKDQNEFVPRKRRS 100
Query: 123 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 182
F H LL +G+ V+ AP + EAQCA L G + D D
Sbjct: 101 ----FGDSPFTNLVDHVYKTNALLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFD 156
Query: 183 SLTFGAPRFLRH--LMDPSSRKI--PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD- 237
FG R SS +M + ++ E ++ I IL GCDY
Sbjct: 157 YFLFGGKNLYRFDFTAGTSSTACLHDIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQR 216
Query: 238 SIRGIGGQTALKLIRQHG 255
++ IG + ++ + G
Sbjct: 217 GVQNIGIVSVFDILGEFG 234
>DICTYBASE|DDB_G0294290 [details] [associations]
symbol:DDB_G0294290 "xeroderma pigmentosum group G
(XPG) family protein" species:44689 "Dictyostelium discoideum"
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 SMART:SM00485 dictyBase:DDB_G0294290 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
EMBL:AAFI02000262 RefSeq:XP_628749.1 ProteinModelPortal:Q54AQ1
EnsemblProtists:DDB0232365 GeneID:3385413 KEGG:ddi:DDB_G0294290
OMA:ENQNLIN Uniprot:Q54AQ1
Length = 977
Score = 124 (48.7 bits), Expect = 0.00024, P = 0.00024
Identities = 39/114 (34%), Positives = 62/114 (54%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L +LL + S+ E G+ +AIDAS+ I+ F+ RT L NE G+
Sbjct: 1 MGVPKLWELLQQSGT-SIDINALE---GKTLAIDASIWIHTFI----RT----LKNEKGD 48
Query: 61 VTSH--LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 112
++ + G F R +LL +KPI+VFDG P LK++ + +R +R A ++
Sbjct: 49 PMTNAPILGFFRRICKLLSLRVKPIFVFDGGVPYLKRRTIEERRKRRERAEQNI 102
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 384 358 0.00081 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 610 (65 KB)
Total size of DFA: 224 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.51u 0.12s 33.63t Elapsed: 00:00:01
Total cpu time: 33.53u 0.12s 33.65t Elapsed: 00:00:02
Start: Mon May 20 22:29:53 2013 End: Mon May 20 22:29:55 2013