BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016711
(384 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/384 (88%), Positives = 367/384 (95%), Gaps = 1/384 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFES+FGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR+S+RADAT+DL EA+E GN
Sbjct: 61 VTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+VYAVASED
Sbjct: 121 KEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEARRLFKEP+V +D+EQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSDDEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
SAPDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKPV ++S PIKRKE
Sbjct: 301 SAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSSSIPIKRKE 360
Query: 361 PEN-TPKATTNKKSKAGGGGGRKR 383
E+ K TTNKKSKAGGG RK+
Sbjct: 361 TEDKAAKETTNKKSKAGGGSKRKK 384
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/385 (87%), Positives = 361/385 (93%), Gaps = 3/385 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+S P KRKE
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKE 360
Query: 361 -PENTPKATTNKKSKAGGGGGRKRK 384
PE+T K NKK+K G GGRK+K
Sbjct: 361 IPESTTKGAANKKTK--GAGGRKKK 383
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/360 (89%), Positives = 350/360 (97%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFES+FGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR+S+RADAT+DL EA+E GN
Sbjct: 61 VTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+VYAVASED
Sbjct: 121 KEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEARRLFKEP+V +D+EQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSDDEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
SAPDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKPV ++S PIKRKE
Sbjct: 301 SAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSSSIPIKRKE 360
>gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis
sativus]
Length = 382
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/378 (86%), Positives = 353/378 (93%), Gaps = 1/378 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK MKEQKFE+YFGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLK QELAKRYSKRADAT+DLA+A+E GN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKXQELAKRYSKRADATEDLADAIEVGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+DIEKFSKRTVKVTKQHNDDCKRLL+LMGVPV+EAPSEAEAQCAALCK G+VYAVASED
Sbjct: 121 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD+IR
Sbjct: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE+ILENIN+ERYQIP+DWPY+EAR+LFKEP V TDEEQL IKW
Sbjct: 241 GIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ FLV+ENGFNS+RVTKA+EKIKAAKNKSSQGR+ESFFKPV N S IKRKE
Sbjct: 301 TTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKE 360
Query: 361 PENTP-KATTNKKSKAGG 377
P K KKSK GG
Sbjct: 361 TSEKPTKQAITKKSKFGG 378
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/370 (88%), Positives = 351/370 (94%), Gaps = 1/370 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPKSMKE KFESYFGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRA+AT+DL+EA+E N
Sbjct: 61 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE ILEN+N+ERYQIP++WPYQEARRLFKEP V+TDE++L IKW
Sbjct: 241 GIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRLFKEPMVITDEKELDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S+PDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKP N S PIKRKE
Sbjct: 301 SSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFFKPTVNPSVPIKRKE 360
Query: 361 -PENTPKATT 369
P N K T
Sbjct: 361 TPVNNAKETN 370
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/359 (89%), Positives = 343/359 (95%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+S P KRK
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRK 359
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/370 (87%), Positives = 348/370 (94%), Gaps = 1/370 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPKSMKE KFESYFGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRA+AT+DL+EA+E N
Sbjct: 61 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+VY V SED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVVSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE I EN+N+ERYQIP++WPYQEARRLFKEP V+TDE++L IKW
Sbjct: 241 GIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRLFKEPLVITDEKELDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S+PDEEGLI FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKP AN S PIKRKE
Sbjct: 301 SSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANPSVPIKRKE 360
Query: 361 -PENTPKATT 369
P N K T
Sbjct: 361 TPVNNAKETN 370
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/359 (89%), Positives = 343/359 (95%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+S P KRK
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRK 359
>gi|449435964|ref|XP_004135764.1| PREDICTED: flap endonuclease 1-like [Cucumis sativus]
Length = 377
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/354 (89%), Positives = 342/354 (96%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK MKEQKFE+YFGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRADAT+DLA+A+E GN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+DIEKFSKRTVKVTKQHNDDCKRLL+LMGVPV+EAPSEAEAQCAALCK G+VYAVASED
Sbjct: 121 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD+IR
Sbjct: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE+ILENIN+ERYQIP+DWPY+EAR+LFKEP V TDEEQL IKW
Sbjct: 241 GIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ PDEEGL+ FLV+ENGFNS+RVTKA+EKIKAAKNKSSQGR+ESFFKPV N S+
Sbjct: 301 TTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSS 354
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/368 (87%), Positives = 345/368 (93%), Gaps = 1/368 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPKSMKE KFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAGMKP+YVFDG+PP++K QEL KR SKRA+AT L EA+EA N
Sbjct: 61 VTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAP+FLRHLMDPSS+KIPVMEF+VAKILEEL+LTMDQFIDLCILSGCDYCD+IR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE ILENI++ERYQ+P+DWPYQEARRLFKEPEV TD+E L +KW
Sbjct: 241 GIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGLI FLV+ENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP AN S PIKRKE
Sbjct: 301 SPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKE 360
Query: 361 -PENTPKA 367
P N KA
Sbjct: 361 TPVNDAKA 368
>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
gi|317374865|sp|C5YUK3.1|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
Length = 380
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/360 (85%), Positives = 338/360 (93%), Gaps = 2/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KK+ELAKR+SKR DAT+DL EAVEAG+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKRFSKREDATNDLKEAVEAGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ +EK SKRTVKVT QHNDDCKRLL+LMGVPVVEAPSEAEA+CAALCK+ +V+AVASED
Sbjct: 121 KDAVEKLSKRTVKVTAQHNDDCKRLLRLMGVPVVEAPSEAEAECAALCKNDKVFAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D +L KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDVPEL--KW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKPVA TSAP+KRKE
Sbjct: 299 TPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPVATTSAPLKRKE 358
>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
Length = 379
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/371 (83%), Positives = 341/371 (91%), Gaps = 3/371 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRYSKR DAT DL EAVE G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ IEK SKRTVKVT+QHN+DCKRLL+LMGVPVVEAPSEAEA+CAALC + +V+AVASED
Sbjct: 121 KDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPR LRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GCDYCDSI+
Sbjct: 181 MDSLTFGAPRXLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D +L KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP A TSAP+KRKE
Sbjct: 299 TAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTSAPLKRKE 358
Query: 361 -PENTPKATTN 370
+ T KAT N
Sbjct: 359 TSDKTSKATAN 369
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/371 (84%), Positives = 338/371 (91%), Gaps = 3/371 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGR+IA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKR DAT +L EAVE G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D +L KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPV +TS P+KRK+
Sbjct: 299 NAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKD 358
Query: 361 PENTP-KATTN 370
P KA N
Sbjct: 359 TSEKPTKAVAN 369
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/371 (84%), Positives = 338/371 (91%), Gaps = 3/371 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGR+IA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKR DAT +L EAVE G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D +L KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPV +TS P+KRK+
Sbjct: 299 NAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKD 358
Query: 361 PENTP-KATTN 370
P KA N
Sbjct: 359 TSEKPTKAVAN 369
>gi|317374910|sp|B4FHY0.1|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194695278|gb|ACF81723.1| unknown [Zea mays]
Length = 379
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/360 (85%), Positives = 336/360 (93%), Gaps = 2/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRYSKR DAT DL EAVE G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ IEK SKRTVKVT+QHN+DCKRLL+LMGVPVVEAPSEAEA+CAALC + +V+AVASED
Sbjct: 121 KDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D +L KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP A TSAP+KRKE
Sbjct: 299 TAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTSAPLKRKE 358
>gi|413946273|gb|AFW78922.1| flap endonuclease 1a [Zea mays]
Length = 523
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/360 (85%), Positives = 336/360 (93%), Gaps = 2/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 145 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGE 204
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRYSKR DAT DL EAVE G+
Sbjct: 205 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGD 264
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ IEK SKRTVKVT+QHN+DCKRLL+LMGVPVVEAPSEAEA+CAALC + +V+AVASED
Sbjct: 265 KDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASED 324
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GCDYCDSI+
Sbjct: 325 MDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIK 384
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D +L KW
Sbjct: 385 GIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 442
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP A TSAP+KRKE
Sbjct: 443 TAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTSAPLKRKE 502
>gi|357132761|ref|XP_003567997.1| PREDICTED: flap endonuclease 1-A-like [Brachypodium distachyon]
Length = 380
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/379 (81%), Positives = 340/379 (89%), Gaps = 3/379 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGLTKLLADNAPK+MKEQKFESYFGR+IA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGVKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRY+KR DAT++L +AVE G+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYAKREDATEELTKAVETGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ IE+FSKRTVKVTKQHNDDCKRLL+LMGVPVVEAP EAEAQCAALC +VYAVASED
Sbjct: 121 TDAIERFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAEAQCAALCIKDKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRF+RHLMDPSSRKIP+MEFEVAKILEEL TMDQFIDLCIL GCDYCDSI+
Sbjct: 181 MDSLTFGAPRFVRHLMDPSSRKIPIMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE ILENIN+++YQIPEDWPY+EARRLFKEP V D +L KW
Sbjct: 241 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYEEARRLFKEPNVTLDLPEL--KW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGL+NFLV ENGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP +TS P+KRKE
Sbjct: 299 TAPDEEGLVNFLVKENGFNQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKE 358
Query: 361 PENTP-KATTNKKSKAGGG 378
P A +KK+K+ G
Sbjct: 359 TSEKPTNAAASKKAKSTRG 377
>gi|357441987|ref|XP_003591271.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480319|gb|AES61522.1| Flap endonuclease 1a [Medicago truncatula]
Length = 369
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 304/351 (86%), Positives = 328/351 (93%), Gaps = 1/351 (0%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
+KE KFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGEVTSHLQGMF RTIRLLE
Sbjct: 3 IKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 62
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
AGMKP+YVFDG+PP++K QEL KR SKRA+AT L EA+EA NKEDIEKFSKRTVKVTKQ
Sbjct: 63 AGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ 122
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
HNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+VYAVASEDMDSLTFGAP+FLRHLMD
Sbjct: 123 HNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMD 182
Query: 198 PSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSI 257
PSS+KIPVMEF+VAKILEEL+LTMDQFIDLCILSGCDYCD+IRGIGG TALKLIRQHGSI
Sbjct: 183 PSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSI 242
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E ILENI++ERYQ+P+DWPYQEARRLFKEPEV TD+E L +KWS PDEEGLI FLV+ENG
Sbjct: 243 EKILENISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENG 302
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE-PENTPKA 367
FNSDRVTKAIEKIKAAKNKSSQGRLESFFKP AN S PIKRKE P N KA
Sbjct: 303 FNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAKA 353
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 309/374 (82%), Positives = 335/374 (89%), Gaps = 9/374 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGR+IA+DASMSIYQFLIVVGRTG E LTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR---YSKRADATDDLAEAVE 117
VTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR YSKR DAT +L EAVE
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRHDMYSKREDATKELTEAVE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVA
Sbjct: 121 EGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
SEDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCD
Sbjct: 181 SEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCD 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
SI+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D +L
Sbjct: 241 SIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL- 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
KW+APDEEGL+ FLV ENGFN DR AIEKIK AKNKSSQGRLESFFKPV +TS P+K
Sbjct: 300 -KWNAPDEEGLVEFLVKENGFNQDR---AIEKIKFAKNKSSQGRLESFFKPVVSTSVPLK 355
Query: 358 RKEPENTP-KATTN 370
RK+ P KA N
Sbjct: 356 RKDTSEKPTKAVAN 369
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/356 (85%), Positives = 333/356 (93%), Gaps = 4/356 (1%)
Query: 30 KIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+IAIDASMSIYQFLIVVGR+G E LTNEAGEVTSHLQGMFTRTIRLLE+GMKP+YVFDG+
Sbjct: 14 QIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLESGMKPVYVFDGK 73
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
PPD+KKQELAKR SKRA+AT+DL+EA++A NKEDIEKFSKRTVKVTKQHN+D K+LL+LM
Sbjct: 74 PPDMKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDYKKLLRLM 133
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
GVPVVEAPSEAEAQCAALCK+G VYAVASEDMDSLTFGAP+FLRHLMDPSS+K+PVMEFE
Sbjct: 134 GVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFE 193
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERY 269
VAKILEELNLTMDQFIDLCILSGCDYCD+IRGIGGQTALKLIRQHGSIE ILENIN+ERY
Sbjct: 194 VAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERY 253
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPEDWPYQEARRLFKEP V T +++L +KWSAPDEEGLI FLV+ENGFNSDRVTKAIEK
Sbjct: 254 QIPEDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEK 313
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKE-PENTPKATTNKKSKAGGGGGRKRK 384
IKAAKNKSSQGRLESFFKP ++S PIKRKE P+N K TNKK+K G GGRK+K
Sbjct: 314 IKAAKNKSSQGRLESFFKPAPSSSVPIKRKETPDNNAK-ETNKKTK--GSGGRKKK 366
>gi|255543058|ref|XP_002512592.1| flap endonuclease-1, putative [Ricinus communis]
gi|223548553|gb|EEF50044.1| flap endonuclease-1, putative [Ricinus communis]
Length = 345
Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/385 (78%), Positives = 331/385 (85%), Gaps = 41/385 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK+MKEQKFESYFGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTS YS+RADAT++LA AVE GN
Sbjct: 61 VTS--------------------------------------YSRRADATEELAAAVETGN 82
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KEDIEKFSKRTVKVTKQHN+DCKRLL+LMGVPV+EAPSEAEA+CAALCKSG+VYAVASED
Sbjct: 83 KEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAECAALCKSGKVYAVASED 142
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGAPRFLRHLMDPSSRK+PVMEFE +KILEELNLTMDQFIDLCILSGCDYCDSIR
Sbjct: 143 MDSLTFGAPRFLRHLMDPSSRKVPVMEFETSKILEELNLTMDQFIDLCILSGCDYCDSIR 202
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIE ILEN+N+ERYQIPEDWPYQEARRLFKEP V+ DEE+ ++KW
Sbjct: 203 GIGGMTALKLIRQHGSIENILENMNKERYQIPEDWPYQEARRLFKEPLVLADEEEPELKW 262
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APD+EGLI FLV+ENGFN+DRVTKAIEKIKAAKNKSSQGRLESFFKPVAN+S PIKRKE
Sbjct: 263 TAPDQEGLITFLVNENGFNNDRVTKAIEKIKAAKNKSSQGRLESFFKPVANSSIPIKRKE 322
Query: 361 -PENTPKATTNKKSKAGGGGGRKRK 384
P++T K T+ KKSKA GGGRK+K
Sbjct: 323 TPDHTAKETSAKKSKA--GGGRKKK 345
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/382 (78%), Positives = 325/382 (85%), Gaps = 40/382 (10%)
Query: 3 IKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVT 62
+KGLTKLLADNAPK+MKEQKFES+FGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGEVT
Sbjct: 39 LKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVT 98
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 122
S YVFDG+PPDLKKQELAKR+S+RADAT+DL EA+E GNKE
Sbjct: 99 S--------------------YVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGNKE 138
Query: 123 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 182
+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+VYAVASEDMD
Sbjct: 139 EIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMD 198
Query: 183 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 242
SLTFGA +FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSGCDYCDSIRGI
Sbjct: 199 SLTFGASKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIRGI 258
Query: 243 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 302
GGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEAR LFKEP+V +D+EQL IKWSA
Sbjct: 259 GGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARCLFKEPQVFSDDEQLDIKWSA 318
Query: 303 PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPE 362
PDEE AIEKIK AKNKSSQGRLESFFKPV ++S PIKRKE E
Sbjct: 319 PDEE-------------------AIEKIKTAKNKSSQGRLESFFKPVVSSSIPIKRKETE 359
Query: 363 N-TPKATTNKKSKAGGGGGRKR 383
+ K TTNKKSKAGGG RK+
Sbjct: 360 DKAAKETTNKKSKAGGGSKRKK 381
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/325 (86%), Positives = 309/325 (95%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPK MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRADAT+DL+ A+E G+
Sbjct: 61 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLSAAIEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE IEKFSKRTVKVTKQHN+DCK+LL LMGVPVVEAPSEAEAQCAALCK+G+VYAVASED
Sbjct: 121 KEGIEKFSKRTVKVTKQHNEDCKKLLGLMGVPVVEAPSEAEAQCAALCKNGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGA +FLRHLMDPSS+KIPVMEF++AK+LEELNLTMDQFIDLCILSGCDYCD+I+
Sbjct: 181 MDSLTFGACKFLRHLMDPSSKKIPVMEFDMAKVLEELNLTMDQFIDLCILSGCDYCDNIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLIRQHGSIETILEN+N+ERYQI +DWPYQEARRLFKEP V + E+ ++KW
Sbjct: 241 GIGGMTALKLIRQHGSIETILENLNKERYQIADDWPYQEARRLFKEPHVFPENEEPELKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTK 325
S PDEEGL+NFLV ENGFN DRVTK
Sbjct: 301 SPPDEEGLVNFLVKENGFNIDRVTK 325
>gi|302796239|ref|XP_002979882.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
gi|302813529|ref|XP_002988450.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300143852|gb|EFJ10540.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300152642|gb|EFJ19284.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
Length = 377
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/347 (78%), Positives = 318/347 (91%), Gaps = 1/347 (0%)
Query: 4 KGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTS 63
+GLTKLLADNAP +MKEQKFESYFGRKIA+DASMSIYQFLIVVGRTGTEMLTNEAGE+TS
Sbjct: 1 QGLTKLLADNAPGAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEITS 60
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HLQGMFTRT+RLLE+GMKP+YVFDG+PP+LKK EL KR ++R +AT+ L EA+E G D
Sbjct: 61 HLQGMFTRTVRLLESGMKPVYVFDGKPPELKKAELVKRGARREEATEGLTEAIEKGEVAD 120
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV-YAVASEDMD 182
IEK+SKRTVKVTKQHN+DC++LL+LMG+PV+EAP EAEA+CAALCK+ +V YAVASEDMD
Sbjct: 121 IEKYSKRTVKVTKQHNEDCQKLLRLMGIPVIEAPCEAEAECAALCKADKVVYAVASEDMD 180
Query: 183 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 242
SLTFG+PRFLRHLM+P+SRKIPVMEF+++ L+ELNL+MDQFIDLCIL GCDYCD+IRGI
Sbjct: 181 SLTFGSPRFLRHLMEPASRKIPVMEFQISTALQELNLSMDQFIDLCILCGCDYCDTIRGI 240
Query: 243 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 302
G QTALKLIRQH ++E +LEN+N++RYQIPE WPYQEARRLFKEP V+ DEE ++KW+A
Sbjct: 241 GPQTALKLIRQHSTLEAVLENLNKDRYQIPESWPYQEARRLFKEPIVLPDEELPELKWNA 300
Query: 303 PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
PDEEGL FLV ENGFN DRVTKAIE+IK+AKNKSSQGR+ESFFKPV
Sbjct: 301 PDEEGLKKFLVEENGFNIDRVTKAIERIKSAKNKSSQGRMESFFKPV 347
>gi|168014475|ref|XP_001759777.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374864|sp|A9S0B8.1|FEN11_PHYPA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|162688907|gb|EDQ75281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/346 (74%), Positives = 313/346 (90%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKL+ADNA ++KEQKFE+YFGRKIAIDASMSIYQFLIVVGR+G+E+LTN+AGE
Sbjct: 1 MGIKGLTKLIADNAHGAVKEQKFENYFGRKIAIDASMSIYQFLIVVGRSGSELLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RTIR+LEAG+KP+YVFDGQPPDLKK+ELAKR+++R DA +DL A E GN
Sbjct: 61 VTSHLQGMFNRTIRVLEAGLKPVYVFDGQPPDLKKRELAKRFARREDAAEDLVTAKETGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ D+EK+SK+TVKVTKQHN+DC++LL+LMGVPVVEAPSEAEA+CA+LCK+ +V+AVASED
Sbjct: 121 EADVEKYSKKTVKVTKQHNEDCRKLLRLMGVPVVEAPSEAEAECASLCKAEKVFAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLT+G+ RFLRHLM+P+SRK+PV+EF++AK+LE L L MDQF+DLCIL GCDYCD+IR
Sbjct: 181 MDSLTYGSTRFLRHLMEPTSRKLPVLEFDIAKVLEGLGLNMDQFVDLCILCGCDYCDTIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG QTALK+IRQHGS+E +LEN+N++RYQ+P+ WPYQEARRLFKEP V E+ + KW
Sbjct: 241 GIGPQTALKMIRQHGSLEIVLENLNKDRYQVPDPWPYQEARRLFKEPLVTPPEKVPEFKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+APD EGL LV ENGFN+DRV KAIEK+K AKNK+SQGRLESFF
Sbjct: 301 TAPDTEGLRQLLVEENGFNNDRVMKAIEKLKVAKNKASQGRLESFF 346
>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
Length = 362
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/359 (76%), Positives = 299/359 (83%), Gaps = 33/359 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLI---------------- 44
MGIKGLTKLLADNAP MKEQKFESYFGRKIA+DASMSIYQFL+
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLVRAPSSPLLLLEELGLK 60
Query: 45 ---------VVGRTGTEMLTNEAGEV--------TSHLQGMFTRTIRLLEAGMKPIYVFD 87
+V ++L V HLQGMF RTIRLLEAG+KP+YVFD
Sbjct: 61 CSLMKLVKSLVWIFLCDVLCLYVFFVYVVIYMMFNRHLQGMFNRTIRLLEAGIKPVYVFD 120
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK+QELAKRYSKRADAT DL A+EAGNKEDIEK+SKRTVKVTKQHNDDCKRLL+
Sbjct: 121 GKPPELKRQELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLR 180
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
LMGVPVVEA SEAEAQCAALCKSG+VY VASEDMDSLTFGAP+FLRHLMDPSSRKIPVME
Sbjct: 181 LMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVME 240
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
FEVAKILEEL LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN+N+E
Sbjct: 241 FEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKE 300
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
RYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW++PDEEG++ FLV+ENGFN DRVTK
Sbjct: 301 RYQIPEEWPYNEARKLFKEPDVITDEEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKV 359
>gi|168066677|ref|XP_001785260.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374868|sp|A9U328.1|FEN12_PHYPA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|162663130|gb|EDQ49912.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 349
Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust.
Identities = 259/342 (75%), Positives = 302/342 (88%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAP SMKEQKFESYFGRKIAIDASMSIY FL+VVGRTGT+MLTN+AGE
Sbjct: 1 MGIKGLTKLLADNAPDSMKEQKFESYFGRKIAIDASMSIYSFLVVVGRTGTDMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL GMF RTIR+LEAG+KP+YVFDG+PP++K ELAKR ++R +A + LA A GN
Sbjct: 61 VTSHLIGMFNRTIRVLEAGLKPVYVFDGKPPEMKGGELAKRLARREEAVESLATAKLEGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ D+EK+SKRTVKVTKQHN+DC++LL+LMGVPVVEAPSEAEA+CA+LCK+G+VYAVASED
Sbjct: 121 EADMEKYSKRTVKVTKQHNEDCRKLLRLMGVPVVEAPSEAEAECASLCKTGKVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ RFLRHLM+P SRK+PVMEF++ K+LE L+LTMDQF+DLCIL GCDY D+IR
Sbjct: 181 MDSLTFGSTRFLRHLMEPVSRKLPVMEFDMNKVLEGLSLTMDQFVDLCILCGCDYIDTIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG QTALKLIRQHGS+E ILEN+N++RYQIP+ WPY+EARRLFKEP V E+ KW
Sbjct: 241 GIGAQTALKLIRQHGSLEKILENLNKDRYQIPDPWPYEEARRLFKEPLVTQAEDVPDFKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 342
+APD EGLI FLV ENGFN DRV AI+KI+ AKNKSSQGR
Sbjct: 301 TAPDAEGLIKFLVEENGFNHDRVQTAIKKIQLAKNKSSQGRF 342
>gi|357122637|ref|XP_003563021.1| PREDICTED: flap endonuclease 1-B-like [Brachypodium distachyon]
Length = 413
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/362 (67%), Positives = 304/362 (83%), Gaps = 4/362 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLA++AP++ +++ E Y GR IAIDAS+SIYQFL+VVGR GTE+LTNEAGE
Sbjct: 1 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGM RT+RLLEAG+KP++VFDG+PPDLKK+ELAKR +R DA++DL A+E G+
Sbjct: 61 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKRELAKRSLRRDDASEDLNRAIEVGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ IEKFSKRTVK+TK+HNDDCK+LL+LMGVPVVEAP EAEAQCA+LCK+ + YAVASED
Sbjct: 121 EDSIEKFSKRTVKITKKHNDDCKKLLRLMGVPVVEAPGEAEAQCASLCKNHKAYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ RFLRH+ D S ++ PV EFEV K+LEEL LTMDQFIDLCILSGCDYC++I+
Sbjct: 181 MDSLTFGSLRFLRHITDLSFKRSPVTEFEVPKVLEELGLTMDQFIDLCILSGCDYCENIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQ ALKLIRQHG IE +++N+N R+ +PEDWPYQE R LFKEP V T+ Q W
Sbjct: 241 GIGGQRALKLIRQHGCIEEVVQNLN-NRFTVPEDWPYQEVRTLFKEPNVCTEIPDFQ--W 297
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
++ D+EG++NFL EN F+SDRV KA++KIKAA+++ S GR++ PVAN S I +KE
Sbjct: 298 TSVDKEGIVNFLAIENSFSSDRVEKAVQKIKAARDRYSPGRVK-LLTPVANLSGSITKKE 356
Query: 361 PE 362
PE
Sbjct: 357 PE 358
>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
Length = 412
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/364 (67%), Positives = 297/364 (81%), Gaps = 5/364 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLA++AP + ++ E Y GR +AIDAS+SIYQFLIVVGR GTE+LTNEAGE
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDASLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGM RT+R+LEAG+KP++VFDG+PPD+KK+ELAKR KR +++DL A+E G+
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +V+A+ASED
Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGA RFLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSGCDYC++IR
Sbjct: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEP V TD W
Sbjct: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFL--W 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT--SAPIKR 358
+ PDEEGLINFL +EN F+ DRV K++EKIKAA +K S GR PVAN S
Sbjct: 299 TPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR-GKLLAPVANLTGSTSTAG 357
Query: 359 KEPE 362
KEP+
Sbjct: 358 KEPK 361
>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B; AltName:
Full=OsFEN-1b
gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
Group]
gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
Length = 412
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/364 (67%), Positives = 296/364 (81%), Gaps = 5/364 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLA++AP + ++ E Y GR +AID S+SIYQFLIVVGR GTE+LTNEAGE
Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGM RT+R+LEAG+KP++VFDG+PPD+KK+ELAKR KR +++DL A+E G+
Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +V+A+ASED
Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFGA RFLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSGCDYC++IR
Sbjct: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEP V TD W
Sbjct: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFL--W 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT--SAPIKR 358
+ PDEEGLINFL +EN F+ DRV K++EKIKAA +K S GR PVAN S
Sbjct: 299 TPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR-GKLLAPVANLTGSTSTAG 357
Query: 359 KEPE 362
KEP+
Sbjct: 358 KEPK 361
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/362 (66%), Positives = 293/362 (80%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLA +AP + +++ E Y GR IA+DAS+SIYQFL VVGR G+E+LTNEAGE
Sbjct: 1 MGIKGLTKLLAQHAPTAAVQRRVEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHLQGM RTIR+LEAG+KP++VFDG+PP++KK+ELAKR KR DA DL A+E G+
Sbjct: 61 ITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDLNRAMEIGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ IEKFSKRTVKVT +HNDDCKRLL+LMGVPVVEAP EAEAQCAALC++ QVYAVASED
Sbjct: 121 ENAIEKFSKRTVKVTGRHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGA RFLRHL D +K PV EF+V+K+LEEL LTMDQFIDLCILSGCDYC++IR
Sbjct: 181 MDTLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGGQ ALKLIRQHG IE +L+N+N+ R+ +PEDWPYQE R LFKEP V W
Sbjct: 241 GIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQEVRTLFKEPNVCAGIPDF--TW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
++PD EGL++FL +EN F+ DRVTKA+EKIK A+++ S GR++ PVA+ KE
Sbjct: 299 TSPDPEGLMDFLSTENSFSPDRVTKAVEKIKVARDRYSPGRMKH-LTPVASLRGSHTEKE 357
Query: 361 PE 362
P+
Sbjct: 358 PQ 359
>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
Length = 389
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/377 (63%), Positives = 299/377 (79%), Gaps = 4/377 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GLTKLL D AP MKEQKFE+YFGRKIA+DASM IY FL+VVGR G +MLT+E GE
Sbjct: 1 MGIQGLTKLLGDAAPGCMKEQKFENYFGRKIAVDASMHIYAFLVVVGRQGDQMLTSETGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RT+R+LEAGMKP++VF+G+ P+LK++ELAKR ++R DA +L A EAGN
Sbjct: 61 VTSHLQGMFFRTVRMLEAGMKPVFVFEGKAPELKREELAKRSNRREDANTELEAAKEAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EK+SKRTV+VT++HN++CKRLL+LMGVPV+EAPSEAEAQCA LCK G VY +++ED
Sbjct: 121 AEDVEKYSKRTVRVTREHNEECKRLLRLMGVPVLEAPSEAEAQCAQLCKDGLVYGISTED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG P+ +RHLM PSS+K MEF+ +L+EL LT DQFIDLCIL GCDY I
Sbjct: 181 MDSLTFGTPKLIRHLMAPSSQKPLAMEFDHELVLKELELTEDQFIDLCILCGCDYTAKIS 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG AL LI++HGSIE +L ++ ++YQIPE +PYQEARRLFKEP+VV ++ Q+KW
Sbjct: 241 GIGAVRALSLIKKHGSIEGVLAALDSKKYQIPEPFPYQEARRLFKEPDVVKGDQIPQLKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI-KRK 359
++PD EGLI+FLV E F DR+ KA+E+I AAK K+SQGRLESFF P S+ + KRK
Sbjct: 301 TSPDTEGLIDFLVKEKTFAEDRIRKAVERINAAKGKASQGRLESFFGPAKVVSSTMGKRK 360
Query: 360 EPENTPKATTNKKSKAG 376
E P A KK +G
Sbjct: 361 E---VPVAAKGKKGSSG 374
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/380 (61%), Positives = 299/380 (78%), Gaps = 2/380 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK LTKLL D+AP KEQK E+YFGRK+A+DASM IYQFL+VVGRTG + LT+E+G+
Sbjct: 1 MGIKNLTKLLGDHAPGCCKEQKVENYFGRKVAVDASMHIYQFLVVVGRTGDQTLTSESGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RT ++LE GMKP+YVFDG+PP LKK+EL++R +R DATD L EA E G
Sbjct: 61 VTSHLQGMFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRGDATDLLTEAKETGA 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
DIEK+SKRTV+VT QHN++C+RLL+LMGVPVVEAPSEAEAQCA +CK G VY +ASED
Sbjct: 121 DADIEKYSKRTVRVTPQHNEECRRLLRLMGVPVVEAPSEAEAQCAQMCKEGLVYGIASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTF P+ +R+LM P ++ +P+ E++ K+LE LNLT DQF+DLCIL GCDYC +I+
Sbjct: 181 MDSLTFATPKLIRNLMKPQTQNVPINEYDYDKVLEGLNLTSDQFVDLCILCGCDYCGTIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIGG TALKLI++H +E +L ++ RY+IP+ +P++EARRLFKEP+V+ + Q+KW
Sbjct: 241 GIGGVTALKLIQKHKRLEDVLASMEGGRYEIPDPFPFEEARRLFKEPDVLKGDSMPQLKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA-NTSAPIKRK 359
+ DEEGL+ FLV + FN DRV KA++++ AAK+KS+QGRLESFF PV+ TS KRK
Sbjct: 301 TTADEEGLVQFLVGDKSFNEDRVRKAVQRVNAAKSKSTQGRLESFFGPVSIKTSDTGKRK 360
Query: 360 EPENTP-KATTNKKSKAGGG 378
EP K KK K+G G
Sbjct: 361 EPATGKGKGQAAKKGKSGVG 380
>gi|317374937|sp|C5WU23.2|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
Length = 428
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/392 (62%), Positives = 302/392 (77%), Gaps = 36/392 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTK+LA++AP++ +++ E Y GR IA+DAS+SIYQFLIVVGR G+E+LTNEAGE
Sbjct: 1 MGIKGLTKVLAEHAPRAAVQRRVEDYRGRVIAVDASLSIYQFLIVVGRKGSELLTNEAGE 60
Query: 61 VT---------------------------SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDL 93
VT SHLQGM RT+R+LEAG+KP++VFDG+PP++
Sbjct: 61 VTRQETSLALPVSDHCIPAYLTFHLCELCSHLQGMLNRTVRMLEAGIKPVFVFDGEPPEM 120
Query: 94 KKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPV 153
KK+ELAKR KR DAT DL A+E G+++ +EKFSKRTVKVT++HNDDCKRLL+LMGVPV
Sbjct: 121 KKKELAKRSLKRDDATKDLNRAIEIGDEDAVEKFSKRTVKVTRKHNDDCKRLLRLMGVPV 180
Query: 154 VEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 213
VEAP EAEAQCAALC++ QVYAVASEDMDSLTFGA RFLRHL D +K PV EF+V+K+
Sbjct: 181 VEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSKV 240
Query: 214 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPE 273
LEEL LTMDQFIDLCILSGCDYC++I+GIGGQ ALKLIRQHG IE +L+N+N+ R+ +PE
Sbjct: 241 LEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPE 300
Query: 274 DWPYQEARRLFKEPEV---VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 330
DWPYQE R LFKEP V ++D W++PD EGL+ FL +EN F+ DRVTKA+EKI
Sbjct: 301 DWPYQEVRTLFKEPNVSAGISD-----FTWTSPDTEGLMGFLSTENSFSPDRVTKAVEKI 355
Query: 331 KAAKNKSSQGRLESFFKPVANTSAPIKRKEPE 362
KAA+++ S GRL+ PVA+ KEP+
Sbjct: 356 KAARDRYSPGRLKH-LTPVASLPGTHTGKEPK 386
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/382 (59%), Positives = 293/382 (76%), Gaps = 6/382 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GLTKLL DNAP +KE KFE+ FGRK+A+DASM IYQF++VVGR G ++LTNEAG+
Sbjct: 1 MGIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHLQGMF RT R+LEAG+KP+YVFDG+PP LK+ +LA R +RADA + L +A EAG+
Sbjct: 61 ITSHLQGMFFRTARMLEAGIKPVYVFDGKPPQLKQDQLAMRSERRADANEALEKAKEAGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +EK+SKR+V+VTK+HN+DCKRLL+LMGVPVVEAPSEAEAQCA + K+G VY +A+ED
Sbjct: 121 AEAVEKYSKRSVRVTKEHNEDCKRLLRLMGVPVVEAPSEAEAQCAEMAKAGLVYGLATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAPR +RHLM PSS +PV E + A L+EL L DQFID+CIL GCDYC +IR
Sbjct: 181 MDALTFGAPRVIRHLMAPSSSNVPVQEIDRAVALQELGLDDDQFIDMCILMGCDYCGTIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG AL+LI++HGSIE ILE +++ ++ +PE +PY+E+ FK PEV E Q+KW
Sbjct: 241 GIGAVRALQLIKKHGSIEAILEELDKAKFPVPEPFPYKESHEFFKNPEVTPAAELPQLKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVANTSAPIKR 358
S+PDEEGL+ FLV+E F+ RV A+ +IK K K++QGR+++FF P +NT + K
Sbjct: 301 SSPDEEGLVQFLVNEKNFSEQRVRAAVSRIKQHKGKANQGRMDTFFTALPKSNTDSAAKT 360
Query: 359 KEPENTPKATTNKKSKAGGGGG 380
KE P A +KK K G G
Sbjct: 361 KE----PPAKEDKKRKGGPGAA 378
>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
Length = 477
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/441 (55%), Positives = 302/441 (68%), Gaps = 85/441 (19%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFL----------------- 43
MGIKGLTK+LA++AP++ +++ E Y GR IA+DAS+SIYQFL
Sbjct: 1 MGIKGLTKVLAEHAPRAAVQRRVEDYRGRVIAVDASLSIYQFLVSPHANPTPLSVRPIGF 60
Query: 44 --------------------------------IVVGRTGTEMLTNEAGEVT--------- 62
IVVGR G+E+LTNEAGEVT
Sbjct: 61 SFLRPFTRRCIWVQCSAEDCVIAVELDFSDDAIVVGRKGSELLTNEAGEVTRQETSLALP 120
Query: 63 ------------------SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSK 104
SHLQGM RT+R+LEAG+KP++VFDG+PP++KK+ELAKR K
Sbjct: 121 VSDHCIPAYLTFHLCELCSHLQGMLNRTVRMLEAGIKPVFVFDGEPPEMKKKELAKRSLK 180
Query: 105 RADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQC 164
R DAT DL A+E G+++ +EKFSKRTVKVT++HNDDCKRLL+LMGVPVVEAP EAEAQC
Sbjct: 181 RDDATKDLNRAIEIGDEDAVEKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQC 240
Query: 165 AALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF 224
AALC++ QVYAVASEDMDSLTFGA RFLRHL D +K PV EF+V+K+LEEL LTMDQF
Sbjct: 241 AALCENHQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQF 300
Query: 225 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 284
IDLCILSGCDYC++I+GIGGQ ALKLIRQHG IE +L+N+N+ R+ +PEDWPYQE R LF
Sbjct: 301 IDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQEVRTLF 360
Query: 285 KEPEV---VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
KEP V ++D W++PD EGL+ FL +EN F+ DRVTKA+EKIKAA+++ S GR
Sbjct: 361 KEPNVSAGISD-----FTWTSPDTEGLMGFLSTENSFSPDRVTKAVEKIKAARDRYSPGR 415
Query: 342 LESFFKPVANTSAPIKRKEPE 362
L+ PVA+ KEP+
Sbjct: 416 LKH-LTPVASLPGTHTGKEPK 435
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/363 (60%), Positives = 285/363 (78%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GLTKLL DNAP +KE KFE+ FGRK+A+DASM IYQF++VVGR G ++LTNEAGE
Sbjct: 1 MGIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGRQGDQLLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHLQGMF RT ++LEAG+KP+YVFDG+PP LK+ +LA+R +RADA + L +A EAG+
Sbjct: 61 ITSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTERRADANEALEKAKEAGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E IEK+SKR+V+VT++HND+CKRLL+LMGVPVVEAP+EAEAQCA + KSG VY +A+ED
Sbjct: 121 QEAIEKYSKRSVRVTREHNDECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVYGLATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAPR +RHLM PSS+ +PV EF+ L EL LT DQFIDLCIL GCDYC +IR
Sbjct: 181 MDALTFGAPRVIRHLMAPSSQNVPVQEFDREVALRELELTDDQFIDLCILMGCDYCGTIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG AL++I++HGSIE +L+ ++ +Y +PE +P++E+ FK PEV E +KW
Sbjct: 241 GIGAVRALQMIKKHGSIEGMLKELDPAKYPVPEPFPHKESHEFFKNPEVTPSAEIPPLKW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APDEEGL+ FLV+E FN RV A+ +IKA K K++QGRLESFF + + K K
Sbjct: 301 TAPDEEGLVQFLVNEKQFNEQRVRNAVGRIKANKTKANQGRLESFFTSLPKPATADKAKP 360
Query: 361 PEN 363
E+
Sbjct: 361 KED 363
>gi|255076159|ref|XP_002501754.1| flap endonuclease-1 [Micromonas sp. RCC299]
gi|317374911|sp|C1E3X9.1|FEN1_MICSR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226517018|gb|ACO63012.1| flap endonuclease-1 [Micromonas sp. RCC299]
Length = 384
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/363 (59%), Positives = 281/363 (77%), Gaps = 2/363 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLL+D AP M+EQKFE Y RK+AIDASM IYQF++VVGR+G + LTNEAGE
Sbjct: 1 MGIKGLTKLLSDYAPGCMREQKFEGYLDRKVAIDASMHIYQFMMVVGRSGEQQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMFTRT+R+L+AG+KP+YVFDG+PP +K ELAKR KR A L +A EAG+
Sbjct: 61 VTSHLQGMFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRKDKREAAESALEKAKEAGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+IEK SKRTV+V+K H+++ +L + +G+PV EAP EAEA CAALCK+G VYA ASED
Sbjct: 121 QEEIEKLSKRTVRVSKVHSEEVMKLARFLGLPVFEAPCEAEATCAALCKAGLVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P+ R+LM PSS++ P++EF+ K+L L LT DQFID+CIL GCDYCDSI+
Sbjct: 181 MDTLCFSTPKLARNLMAPSSQEKPILEFDFDKLLAGLELTWDQFIDVCILCGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG ALK I+Q+G+IE +LE++++E+Y +P+DWPY+EAR LFK PEVV + L +KW
Sbjct: 241 GIGPVNALKYIKQYGNIEGLLEHLDKEKYPVPDDWPYKEARVLFKNPEVV-QTDGLTLKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI-KRK 359
+APDEE ++ FL E FN DR+ K + +K A+++ Q RLE+FF S+ + KRK
Sbjct: 300 TAPDEEAVVAFLCGEKSFNEDRIRKQLADLKKARSQGGQNRLETFFGAATVKSSTVGKRK 359
Query: 360 EPE 362
EPE
Sbjct: 360 EPE 362
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/389 (55%), Positives = 290/389 (74%), Gaps = 6/389 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL++++ DNAP + K+ ++YFGRK+AIDASMSIYQFLI V ++ + LTNEAGE
Sbjct: 1 MGIQGLSRVICDNAPAATKQNDIKNYFGRKVAIDASMSIYQFLIAVRQSDGQQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GM RTIR++E G+KP YVFDG+PP LK EL KR +RA+A + A+E G+
Sbjct: 61 TTSHLMGMLYRTIRMVENGIKPAYVFDGKPPTLKSGELQKRGERRAEAQKEADTALETGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+ +FS+RTVKVTK+ N +C+RLLKLMG+P+VEAP EAEAQCAAL K+G+VYA SED
Sbjct: 121 TENFNRFSRRTVKVTKEQNQECRRLLKLMGIPIVEAPCEAEAQCAALAKAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAP LRHL ++KIP+ EF K+LE LN + D+FIDLCIL GCDYCDSIR
Sbjct: 181 MDTLTFGAPVLLRHLTFSEAKKIPISEFNTQKVLEGLNFSHDEFIDLCILLGCDYCDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG A++L+++H +IE I+++I++ +Y++PE+WP++EAR+LFKEP+V+ D +++ W
Sbjct: 241 GIGPHRAVQLMKEHRTIENIIKSIDKTKYKVPENWPFKEARQLFKEPDVL-DPATVELNW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAPIK 357
+ PDE GL+ FLV+E GF+ DRV KA E++ ++QGRL+ FFK + A+ +K
Sbjct: 300 TKPDEAGLLQFLVTEKGFSEDRVKKAAERLSKLMGTATQGRLDGFFKAIPRPASDPLTLK 359
Query: 358 RK--EPENTPKATTNKKSKAGGGGGRKRK 384
RK E + TPK KKS AGG K +
Sbjct: 360 RKAAESKTTPKGKNAKKSVAGGSSKSKSR 388
>gi|327278874|ref|XP_003224185.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Anolis
carolinensis]
Length = 515
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 289/383 (75%), Gaps = 5/383 (1%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV 61
GI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G +ML NE GE
Sbjct: 135 GIHGLAKLIADIAPAAIREXDIKSYFGRKVAIDASMSIYQFLIAV-RQGADMLQNEEGET 193
Query: 62 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 121
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R +A L EA EAG +
Sbjct: 194 TSHLMGMFYRTIRMVENGLKPVYVFDGKPPQLKSGELAKRIERRTEAEKQLQEAKEAGEE 253
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
E++EKFSKR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+ +VYA A+EDM
Sbjct: 254 ENVEKFSKRLVKVTKQHNEECKKLLTLMGIPYVDAPGEAEASCAALVKANKVYAAATEDM 313
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
D LTFG+P +RHL ++K+P+ EF +++IL++L+LT ++F+DLCIL GCDYC+SIRG
Sbjct: 314 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQDLSLTQEEFVDLCILLGCDYCESIRG 373
Query: 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 301
IG + A++LI+QH SIE I++ I+ ++Y +PE+W ++EA++LF EPEV+ D E +++KWS
Sbjct: 374 IGPKRAVELIKQHKSIEKIIQQIDTKKYSLPENWLHKEAQQLFLEPEVI-DAEAVELKWS 432
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
P+EE L+NF+ E FN +R+ ++++ ++ S+QGRL+ FFK + + KRKEP
Sbjct: 433 EPNEEELVNFMCGEKQFNEERIRNGVKRLNKSRQGSTQGRLDDFFK-ITGSITSAKRKEP 491
Query: 362 ENTPKATTNKKSKAGGGGGRKRK 384
E PK + KK++ G K K
Sbjct: 492 E--PKGSAKKKARGSGSATSKFK 512
>gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
Length = 380
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 283/384 (73%), Gaps = 4/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KE + +SYFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF ++IL+++ LT QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF EPEVV D + +KW
Sbjct: 240 GIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEARGLFLEPEVV-DGTSVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDE+GLI F+ +E F+ DR+ +KI ++ S+QGRL++FF + S+ KRKE
Sbjct: 299 NEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A +K+ A G +K K
Sbjct: 357 PETKGSAKKKQKTSATPGKFKKGK 380
>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|317374919|sp|A4S1G4.1|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 389
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/390 (59%), Positives = 287/390 (73%), Gaps = 8/390 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+ DNAP ++KEQKFESY R++AIDASM IYQF++VVGR G + LTNEAGE
Sbjct: 1 MGIKGLTALMRDNAPGAIKEQKFESYLDRRVAIDASMHIYQFMMVVGRQGEQQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGM RT R+LEAG+KPIYVFDG+PP +K ELAKR KR +A L A EAGN
Sbjct: 61 VTSHLQGMLNRTCRMLEAGIKPIYVFDGKPPVMKGGELAKRKDKREEAEAALKAAREAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EK SKRTV+V+KQH+ + +L L+GVPV EAP EAEA CAA+CK+G V+AVA+ED
Sbjct: 121 QEEVEKLSKRTVRVSKQHSQEVMKLASLLGVPVFEAPCEAEASCAAMCKAGLVWAVATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF APR R+LM P S+ PV+EF+ K+L L LT +QFID+CIL GCDYCD+IR
Sbjct: 181 MDTLTFAAPRLARNLMAPKSQDKPVLEFDYDKVLAGLGLTPEQFIDMCILCGCDYCDTIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG +TALKLI++HGSIE ILE I+ E+Y P+DW + AR LFK PEV+ D + + W
Sbjct: 241 GIGPKTALKLIKEHGSIEKILEEIDTEKYPPPQDWDFAGARELFKNPEVM-DTTGIALSW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK-NKSSQGRLESFFKPVANTSAPIKRK 359
AP+EEGLI+FLV E FN +RV K+K A+ K+SQ RLESFF P S+ I ++
Sbjct: 300 KAPNEEGLIDFLVKEKQFNEERVRAVCAKVKKARQGKASQNRLESFFGPPTIISSTIGKR 359
Query: 360 EPE-----NTPKATTNKKSKAGGGGGRKRK 384
+ E N NKKSK G G R+ K
Sbjct: 360 KVEEKKGKNGKAGLANKKSK-GVSGFRRSK 388
>gi|317374918|sp|C1BM18.1|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
Length = 380
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/384 (57%), Positives = 286/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ+ +++FGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPGAIKEQEMKNFFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVT+QHND+CK+LL LMGVP VEAP EAEA CAAL K+G+V+A A+ED
Sbjct: 120 QENIDKFSKRLVKVTRQHNDECKKLLTLMGVPYVEAPCEAEASCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF ++IL+++ L+ +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTGVLLRHLTASEAKKLPIQEFHFSRILQDIGLSHEQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQHGSIE IL+NI+ ++ +PEDW Y+EAR LF P+VV D L++KW
Sbjct: 240 GIGPKRAMDLIRQHGSIEEILDNIDLSKHPVPEDWLYKEARGLFLTPDVV-DCSCLELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGL+ F+ +E F+ DR+ +KI ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 SEPDEEGLVQFMCAEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSVTGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K +T KK K G G+ +K
Sbjct: 357 PEM--KGSTKKKLKTGATAGKFKK 378
>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
Length = 380
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/384 (57%), Positives = 283/384 (73%), Gaps = 4/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KE + +SYFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
M LTFG LRHL ++K+P+ EF ++IL+++ LT QFIDLCIL GCDYC +I+
Sbjct: 180 MAGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QHGSIE ILENI+ +++ PEDW Y+EAR LF EPEVV D + +KW
Sbjct: 240 GIGPKRAIDLIKQHGSIEEILENIDPNKHRAPEDWLYKEARGLFLEPEVV-DGTSVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDE+GLI F+ +E F+ DR+ +KI ++ S+QGRL++FF + S+ KRKE
Sbjct: 299 NEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSISS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A +K+ A G +K K
Sbjct: 357 PETKGSAKKKQKTSATPGKFKKGK 380
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/384 (58%), Positives = 279/384 (72%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KEQ ++YFGRKIAIDASM IYQFLI V + G +L +E GE
Sbjct: 1 MGIHGLAKLIADHAPGAIKEQDIKNYFGRKIAIDASMCIYQFLIAVRQDGN-VLQSEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKMLAKAQELGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHNDDCK+LL LMGVP +EAP EAEA CAAL K G+V+A A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNDDCKKLLTLMGVPYIEAPCEAEASCAALVKEGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+PV EF +IL+++ LT +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTNVLLRHLTASEAKKLPVQEFHFNRILQDIGLTSEQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQHGSIE ILENI+ ++ PEDW Y+EAR LF +PEVV D + +KW
Sbjct: 240 GIGPKRAIDLIRQHGSIEEILENIDTSKHPAPEDWLYKEARNLFLKPEVV-DSSTVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEE LI F+ SE F+ DR+ +K+ ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 REPDEEALIQFMCSEKQFSEDRIRNGCKKMMKSRQGSTQGRLDSFFSVTGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK K G G+ RK
Sbjct: 357 PET--KGSAKKKQKTGATPGKFRK 378
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 293/384 (76%), Gaps = 4/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+ D+AP +MKE + ++YFGRK+AIDASMSIYQFLI V + G MLTN+AGE
Sbjct: 1 MGIQGLAKLIGDHAPGAMKENEIKNYFGRKVAIDASMSIYQFLIAVRQDGN-MLTNDAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PP++K ELAKR +R +A L +A EAG
Sbjct: 60 ATSHLMGMFYRTIRMVDNGIKPVYVFDGKPPNMKSGELAKRAERREEAQKALEKAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+ KF KR VKVTK+HN +CK+LL LMG+P V+AP EAEAQCA L K G+VYA +ED
Sbjct: 120 AEDVNKFQKRLVKVTKEHNAECKKLLTLMGIPYVDAPCEAEAQCAELAKKGKVYAAGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL +RK+P+ E+ ++L EL+LT DQFIDLCIL GCDYCDSIR
Sbjct: 180 MDVLTFGTNIMLRHLTFSEARKMPIKEYYYDRLLAELDLTQDQFIDLCILLGCDYCDSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LIRQ+ SIE IL++I+ +++ +PEDWPY +AR+LFKEPE VT +Q+++KW
Sbjct: 240 GIGPKRAIELIRQYKSIEEILKHIDTKKFPVPEDWPYDQARKLFKEPE-VTPADQVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ ++ +E GF+ DR+ +K+K A++ S+QGRL+SFFK +++ S +KRKE
Sbjct: 299 VDPDEEGLVQYMSNEKGFSEDRIKNGAKKLKNARHTSTQGRLDSFFKVMSSPS--VKRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
P K + +KK+K GG +K K
Sbjct: 357 PPKGAKGSASKKAKMSGGKFKKPK 380
>gi|432927428|ref|XP_004081007.1| PREDICTED: flap endonuclease 1-like [Oryzias latipes]
Length = 380
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/384 (57%), Positives = 282/384 (73%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KEQ +SYFGRKIAIDASM +YQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADHAPSAIKEQDIKSYFGRKIAIDASMCMYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGERRAEAEKLLAQAQEMGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K G+V+A A+ED
Sbjct: 120 QENVEKFTKRLVKVTKQHNDECKKLLSLMGVPYIEAPCEAEASCAALVKEGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF +IL++++LT +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTNVLLRHLTASEAKKLPIQEFHFNRILQDMDLTKEQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQHG IE ILENI+ +++ PEDW Y+EAR LF +PEVV D +++KW
Sbjct: 240 GIGPKRAVDLIRQHGCIEEILENIDSKKHSAPEDWLYKEARGLFLKPEVV-DCSSVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ F+ +E F+ DR+ +KI ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 NEPDEEGLVQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K KK K G G+ +K
Sbjct: 357 PET--KGPAKKKQKTGATPGKFKK 378
>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
Length = 380
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 283/384 (73%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KEQ ++YFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADHAPGAIKEQDIKNYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKLLAQAQEMGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHNDDCK+LL LMGVP +EAP EAEA CAAL K+G+V+A A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNDDCKKLLTLMGVPYIEAPCEAEATCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF +++L+++ LT +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRMLQDIGLTNEQFIDLCILLGCDYCATIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQHG IE ILENI+ ++ PEDW Y+EARRLF +PEVV D +++KW
Sbjct: 240 GIGPKRAIDLIRQHGCIEEILENIDPNKHPSPEDWLYKEARRLFLKPEVV-DCSTVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDE+ LI F+ +E F+ DR+ +KI ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 SEPDEDALIQFMCNEKQFSEDRMRNGCKKIMKSRQGSTQGRLDSFFTITGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK K G G+ RK
Sbjct: 357 PE--IKGSAKKKQKTGATPGKFRK 378
>gi|317376191|sp|B9EMY6.1|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
Length = 380
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/384 (56%), Positives = 283/384 (73%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ ++YFGRKIAIDASM +YQFL+ V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGN-VLQNENGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVT+QHND+CK+LL LMGVP +EAP EAEA CAAL K+G+V+A A+ED
Sbjct: 120 QENIDKFSKRLVKVTQQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF+ ++L+++NLT +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTGVLLRHLTASEAKKLPIQEFQFTRLLQDINLTHEQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQHGSIE ILENI+ ++ PEDW Y+EAR LF +P+VV D + +KW
Sbjct: 240 GIGPKRAIDLIRQHGSIEEILENIDSSKHPAPEDWLYKEARGLFLQPDVV-DCSTVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDE+ LI F+ +E F+ DR+ +KI ++ S+QGRL++FF + S+ KRKE
Sbjct: 299 SEPDEDALIQFMCAEKQFSEDRIKNGCKKILKSRQGSTQGRLDTFFTITGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK K G G+ +K
Sbjct: 357 PET--KGSNKKKQKTGATPGKFKK 378
>gi|348540973|ref|XP_003457961.1| PREDICTED: flap endonuclease 1-like [Oreochromis niloticus]
Length = 380
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 282/384 (73%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ ++YFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPGAIKEQDIKNYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKMLAQAQEIGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KF+KR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K+G+V+A A+ED
Sbjct: 120 QENIDKFTKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF ++IL+++ LT +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTNILLRHLTASEAKKLPIQEFHFSRILQDIGLTNEQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF +PEVV D +++KW
Sbjct: 240 GIGPKRAIDLIKQHGSIEEILENIDSNKHPAPEDWLYKEARGLFLKPEVV-DCSTVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGLI F+ E F+ DR+ +KI ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 NEPDEEGLIQFMCEEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK K G G+ +K
Sbjct: 357 PE--IKGSAKKKQKTGATPGKFKK 378
>gi|348560389|ref|XP_003465996.1| PREDICTED: flap endonuclease 1-like [Cavia porcellus]
Length = 380
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 285/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A G
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAVGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+ L+LT QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQALDLTQAQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDHSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEE L+ FL E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPDEEQLVKFLCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK T KK+K G G KR
Sbjct: 358 PE--PKGPTKKKAKTGVAGRFKR 378
>gi|410909029|ref|XP_003967993.1| PREDICTED: flap endonuclease 1-like [Takifugu rubripes]
Length = 380
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/384 (57%), Positives = 280/384 (72%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ ++YFGRKIAIDASM +YQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPGAIKEQDIKNYFGRKIAIDASMCMYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR KRA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGEKRAEAEKLLAQAQETGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+IEKFSKR VKVTKQH+D+CK+LL LMGVP +EAP EAEA CAAL K+G+V+A A+ED
Sbjct: 120 QENIEKFSKRLVKVTKQHSDECKKLLTLMGVPYIEAPCEAEASCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ EF +++L+E LT +QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRVLQETGLTNEQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QHGSIE ILENI+ +Y PEDW ++EAR LF P+VV D +++KW
Sbjct: 240 GIGPKRAIDLIKQHGSIEEILENIDTNKYPSPEDWLFKEARGLFVNPDVV-DCSTVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDE+GLI F+ +E F+ DR+ +KI ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 GEPDEDGLIQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK K G G+ R+
Sbjct: 357 PEG--KGSAKKKQKTGATPGKFRR 378
>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 380
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 288/383 (75%), Gaps = 3/383 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+ D AP ++KE + ++YFGRK+AIDASM++YQFLI + + G + LTNE GE
Sbjct: 1 MGILGLSKLICDKAPSAVKENEIKNYFGRKVAIDASMAVYQFLIAIRQDGNQ-LTNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSH+ G+F RTIRLL G+KP++VFDG+PP +K ELAKR +R A +LA+A E+G
Sbjct: 60 VTSHIAGLFYRTIRLLGNGIKPVFVFDGKPPQMKSGELAKRAERREQAEKELAKAQESGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
D+EK+S+R VKVT++H DDCK+LL+LMG+PVVEAP+EAEAQCA+L KSG+VYA A+ED
Sbjct: 120 AADVEKYSRRLVKVTREHMDDCKKLLRLMGIPVVEAPTEAEAQCASLVKSGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF + R LRHL +RK+P+ EF K+LEE+ +T +QF+DLCIL GCDYC+ IR
Sbjct: 180 MDALTFHSSRLLRHLTFSEARKMPIQEFVYEKVLEEMEMTHEQFVDLCILLGCDYCEHIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A LI+Q+ SI+ IL+NI+ ++Y +P+ W Y++AR+LF P+V E+ +++KW
Sbjct: 240 GVGPKRAYDLIKQYRSIDEILKNIDLKKYTVPDGWVYKDARQLFLAPDVAASED-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEG++ F+V E GFN DRV I+KI + KS+QGRL+ FFK + +T KRK
Sbjct: 299 NDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQNRQKSTQGRLDDFFKVLPSTPKTKKRK- 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
+ K+ + KK GG G RKR
Sbjct: 358 SDTKIKSESAKKRAKGGSGFRKR 380
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/384 (54%), Positives = 287/384 (74%), Gaps = 5/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIHGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGAEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E+G+KP+YVFDG+PP LK ELAKR +RA+A L EA EAG
Sbjct: 60 TTSHLMGMFYRTIRMVESGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHLQEAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEK+SKR VKVT+QHND+CK+LL LMG+P +EAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 ENNIEKYSKRLVKVTQQHNDECKKLLTLMGIPYLEAPGEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + +IL++L LT +QF+DLCIL GCDYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI++H +IE I++ I+ ++Y +PE+W ++EA++LF EP+VV D + +++KW
Sbjct: 240 GIGPKRAVELIKEHKTIEKIVQQIDTKKYPLPENWLHKEAQKLFLEPDVV-DPDAVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V + KRKE
Sbjct: 299 TEPNEEELVRFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGSITSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK+K K K
Sbjct: 358 PET--KGSAKKKAKTNNATATKAK 379
>gi|303279240|ref|XP_003058913.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460073|gb|EEH57368.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 360
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/361 (61%), Positives = 287/361 (79%), Gaps = 2/361 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLL+D+AP M+EQKFESY RK+AIDASM IYQF++V+GR G + LTN+AGE
Sbjct: 1 MGIKGLTKLLSDHAPGCMREQKFESYLDRKVAIDASMHIYQFMMVIGRQGDQTLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF RT R+LEAG+KP+YVFDG+PP +K ELAKR KR +A LA+A EAG+
Sbjct: 61 VTSHLQGMFMRTCRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKRDEAEAALAKAKEAGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+IEK SKRTV+VT+Q + + +L +LMG+PV EAP EAEA CAALCK+G VYA ASED
Sbjct: 121 QEEIEKMSKRTVRVTRQQSQEVMQLARLMGLPVFEAPCEAEASCAALCKAGLVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P+ R+LM P+S+ P++EF+ KIL EL++T +QFID+CIL GCDYCDSI+
Sbjct: 181 MDTLCFACPKLARNLMSPASQGKPILEFDYEKILTELDMTWEQFIDVCILCGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G A+ LI++HG+IET+L++++ E+Y +PEDWPY+EAR LFK P+VV + + L++KW
Sbjct: 241 GVGPVKAVSLIKKHGNIETLLQHLDTEKYPVPEDWPYKEARELFKHPDVV-NTDGLELKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV-ANTSAPIKRK 359
+APDEEG++ FLV E F +RV ++K+KAAK KSSQ RLESFF V +S KRK
Sbjct: 300 TAPDEEGIVAFLVGEKQFGEERVRNTLKKLKAAKGKSSQNRLESFFGAVTVKSSTTGKRK 359
Query: 360 E 360
E
Sbjct: 360 E 360
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/384 (56%), Positives = 281/384 (73%), Gaps = 3/384 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++L+AD AP ++KE + + +FGRK+AIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGIKGLSQLIADIAPFAVKEGEIKQFFGRKVAIDASMCLYQFLIAVRAEGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRLLE G+KP+YVFDG+PPDLK EL KR +R +A L +A EAG
Sbjct: 60 TTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRAERREEAQKALDKATEAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKF++R VKVTK H ++ K LL+LMGVP VEAP EAEAQCAAL ++G+VYA A+ED
Sbjct: 120 TEDIEKFNRRLVKVTKHHANEAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+PV EF K+L+ LT D+FIDLCIL GCDYCD+IR
Sbjct: 180 MDALTFGSNILLRHLTFSEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI +H SIE ILE+++R++Y +PE W Y++AR+LFKEPE V D + +++KW
Sbjct: 240 GIGPKKAIELINKHRSIEKILEHLDRQKYIVPEGWNYEQARKLFKEPE-VQDADTIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGL+ FL + FN DR+ +KI KN ++QGRL+SFFK + +T P KRK
Sbjct: 299 SEPDEEGLVKFLCGDRQFNEDRIRSGAKKILKTKNTATQGRLDSFFKVLPSTGTP-KRKV 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
E P A ++ K GG R RK
Sbjct: 358 DEKKPLAGSSAKKAKTGGATRGRK 381
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/377 (56%), Positives = 284/377 (75%), Gaps = 6/377 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KLL D AP +KE + ++YFGRKIAIDASMSIYQFLI V G++ LTNEAGE
Sbjct: 1 MGIQGLAKLLGDIAPSGIKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQ-LTNEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E G+KP+YVFDG+PP LK ELAKR +R +A L++A EAG+
Sbjct: 60 TTSHLMGLFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQKALSKAEEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+I+KFS+R V+VTK+HN++CK+LLKLMG+P VEAP EAEAQCAAL KSG+VYA +ED
Sbjct: 120 TENIDKFSRRLVRVTKEHNEECKQLLKLMGIPYVEAPCEAEAQCAALVKSGKVYATGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LRHL ++K+P+ EF + +L E L+ D+FIDLCIL GCDYCDSI+
Sbjct: 180 MDALTFGTTVMLRHLTFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCILLGCDYCDSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + ++ LIRQH SI+ ILENI+ ++ PE+W Y+EAR LFK PEV EE +++KW
Sbjct: 240 GIGPKRSVDLIRQHRSIDKILENIDTSKHPPPENWLYKEARELFKNPEVRNPEE-IELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
P+EE L+ F+ E GF+ DR+ I+K+ A++ S+QGRL+SFFK + +P +++
Sbjct: 299 EEPNEEALVTFMCQEKGFSEDRIRSGIKKLTKARHGSTQGRLDSFFKVLP---SPANKRK 355
Query: 361 PENTPKATTNKKSKAGG 377
++ K + NKK+K GG
Sbjct: 356 LQDG-KGSQNKKAKTGG 371
>gi|317374875|sp|C3KJE6.1|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
Length = 380
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 280/384 (72%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GLTKL+AD AP ++KEQ ++YFGRKIAIDASM +YQFLI V + G +L NE GE
Sbjct: 1 MGIHGLTKLIADQAPGAIKEQDIKNYFGRKIAIDASMCLYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR KRA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGEKRAEAEKMLAQAQELGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K+G+V+A A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEATCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+P+ E ++IL+++ LT +QFIDLCI GCDYC +I+
Sbjct: 180 MDGLTFGTNVLLRHLTASEAKKLPIQELHYSRILQDIGLTNEQFIDLCIPLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF + EVV D + +KW
Sbjct: 240 GIGPKRAIDLIKQHGSIEEILENIDSSKHPAPEDWLYKEARGLFLKAEVV-DCSTVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGLI F+ +E F+ DR+ +KI ++ S+QGRL+SFF + S+ KRKE
Sbjct: 299 SEPDEEGLIQFMCNEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSITGSLSS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK K G G+ +K
Sbjct: 357 PE--LKGSAKKKQKTGATPGKFKK 378
>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
Length = 380
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 282/384 (73%), Gaps = 4/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++EQ ++YFGRKIAIDASM IYQFLI V R G +L N+ GE
Sbjct: 1 MGIHGLAKLIADQAPTAIREQDIKNYFGRKIAIDASMCIYQFLIAVRRDGN-VLQNDDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+L++G+KP+YVFDG+PP LK EL KR +RA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEMGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K+G+ YA A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGKAYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG LRHL ++K+ + EF +++L+E++L+ QFIDLCIL GCDYC +I+
Sbjct: 180 MDGLTFGTSVLLRHLTASEAKKLSIQEFHFSRVLQEMSLSHQQFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+Q+GSIE IL+NI++ ++ PEDW Y+EAR LF EPEVV D +++KW
Sbjct: 240 GIGPKRAIDLIKQYGSIEEILDNIDQSKHPAPEDWLYKEARALFLEPEVV-DCTAMELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDE+GL+ F+ SE F+ DR+ +KI ++ S+QGRL++FF + S+ KRKE
Sbjct: 299 NEPDEDGLVQFMCSEKQFSEDRIRNGCKKIMKSRRGSTQGRLDTFFTVTGSISS--KRKE 356
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A +K+ A G +K K
Sbjct: 357 PEVKGSAKKKQKTSATPGKFKKGK 380
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/384 (53%), Positives = 286/384 (74%), Gaps = 5/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGAEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R++A L EA EAG
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+VYA A+ED
Sbjct: 120 EANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + ++L++L LT +QF+DLCIL GCDYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+V+ ++ +++KW
Sbjct: 240 GIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVINPDD-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V + KRKE
Sbjct: 299 TEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGSITSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK+K + +K
Sbjct: 358 PET--KGSAKKKAKTNSATAKFKK 379
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/384 (53%), Positives = 286/384 (74%), Gaps = 5/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+A+ AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIHGLAKLIAERAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGAEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R++A L EA EAG
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+VYA A+ED
Sbjct: 120 EANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + ++L++L LT +QF+DLCIL GCDYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+V+ ++ +++KW
Sbjct: 240 GIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVINPDD-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V + KRKE
Sbjct: 299 TEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGSITSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE K + KK+K + +K
Sbjct: 358 PET--KGSAKKKAKTNSATAKFKK 379
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/384 (57%), Positives = 282/384 (73%), Gaps = 4/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++L+AD AP ++KE + +++FGRK+AIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGIKGLSQLIADLAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRLLE G+KP+YVFDG+PPDLK EL KR KR +A L +A EAG
Sbjct: 60 TTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEAQKALDKATEAGV 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDI+KF++R VKVTKQH+++ K LLKLMGVP V+AP EAEAQCAAL K G+VYA A+ED
Sbjct: 120 TEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+PV EF KIL+ L LT D+FIDLCIL GCDYCDSIR
Sbjct: 180 MDALTFGSNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI +H +IE ILEN++ ++Y +PE+W YQ+AR LFKEPEV EE +++KW
Sbjct: 240 GIGPKKAVELINKHRTIEKILENLDTKKYVVPENWNYQQARVLFKEPEVANPEE-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ +L + FN DR+ +KI K+ ++QGRL+SFFK + +T P ++ E
Sbjct: 299 GEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKSTATQGRLDSFFKVLPSTPNPKRKIE 358
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
+ TP + K GG GRK K
Sbjct: 359 DKKTP--ASKKAKTTGGKPGRKPK 380
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/387 (56%), Positives = 284/387 (73%), Gaps = 5/387 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++L+AD AP ++KE + +++FGRK+AIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGIKGLSQLIADVAPFAVKEGEIKTFFGRKVAIDASMCLYQFLIAVRAEGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRLLE G+KP+YVFDG+PP+LK EL KR +R +A L +A EAG
Sbjct: 60 TTSHLMGTFYRTIRLLENGIKPVYVFDGKPPELKSGELNKRAERREEAQKALDKATEAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKF++R VKVTKQH ++ K LL+LMGVP VEAP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 VEDIEKFNRRLVKVTKQHANEAKELLRLMGVPYVEAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+PV EF K+L+ LT D+FID+CIL GCDYCD+IR
Sbjct: 180 MDALTFGSNILLRHLTFSEARKMPVQEFHYEKVLKGFELTADEFIDMCILLGCDYCDTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI +H SIE ILE++++ +Y +PEDW YQ+ARRLFKEPE V D ++++KW
Sbjct: 240 GIGPKKAIELINKHRSIEQILEHLDKSKYVVPEDWNYQQARRLFKEPE-VADAAEIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT--SAPIKR 358
S PDEEGL+ +L + FN DR+ +KI K ++QGRL+SFFK + +T SA KR
Sbjct: 299 SEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKTSATQGRLDSFFKVLPSTAGSATPKR 358
Query: 359 KEPENTP-KATTNKKSKAGGGGGRKRK 384
K+ + P + KK+K GRK K
Sbjct: 359 KQEDKKPLVGSAAKKAKTATPRGRKPK 385
>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
Length = 428
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 278/384 (72%), Gaps = 7/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL++NAP +M+EQKF SY R++AIDASM IYQF+I VGRTG + LTNEAGE
Sbjct: 40 MGIKGLTALLSENAPGAMREQKFTSYLDRRVAIDASMHIYQFMIAVGRTGEQTLTNEAGE 99
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGM RT R+LEAG+KP+YVFDG+PP +K ELAKR KR +A L A EAGN
Sbjct: 100 VTSHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKREEAEAALKAAREAGN 159
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EK SKRTV+V+K+ + + +L +L+G+P EAP EAEA CAA+CK+G V+AV +ED
Sbjct: 160 QEEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTED 219
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF APR R+LM P S + PV+EF+ K + L LT DQFIDLCIL GCDY D+IR
Sbjct: 220 MDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIR 279
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G +TALKLI++HGSIE ILE I+ E+Y P+DW + AR LFK PEV+ D + + W
Sbjct: 280 GVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFAGARELFKNPEVM-DVSGINLSW 338
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFKPVANTSAPIKRK 359
APDEEGL+ FLV E F DRV +I KA + +SQ RLESFF P S+ I ++
Sbjct: 339 KAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFFGPPKIISSTIGKR 398
Query: 360 EPENT-----PKATTNKKSKAGGG 378
+ E T KA NKKSK G
Sbjct: 399 KVEETKSGKGSKAGLNKKSKGVSG 422
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/343 (58%), Positives = 272/343 (79%), Gaps = 2/343 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KLL D AP +MKE +F++YFGRK+A+DASM IYQFLI V + G+ ++ NE GE
Sbjct: 1 MGILGLSKLLGDYAPSAMKENEFKNYFGRKVAVDASMCIYQFLIAVRQDGSNLM-NEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PPD+K ELAKR +R +A L +A EAG+
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPDMKSGELAKRKERREEAQKQLEKAEEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+IEKF++R VKV+KQHN++CK LLK MG+P + AP EAEAQCAAL K+G+VYA +ED
Sbjct: 120 EENIEKFNRRLVKVSKQHNEECKELLKYMGIPFINAPGEAEAQCAALVKAGKVYATGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR+L +RK+P+ E+ ++LEEL LT D+FIDLCIL GCDYCDSIR
Sbjct: 180 MDALTFGTTVLLRNLTVAEARKLPIKEYYYNRVLEELGLTKDEFIDLCILLGCDYCDSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QH +I+ IL++++ ++Y +PEDW Y+EARRLF+EPE V D E+L++KW
Sbjct: 240 GIGPKRAIDLIKQHKTIDEILKHLDSKKYTVPEDWMYKEARRLFQEPE-VADPEELELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 343
S PDEEGLI+F+V++ F+ DR+ ++K++ AK ++QGRL+
Sbjct: 299 SEPDEEGLIDFMVTQKNFSEDRIRNGMKKLQKAKQGTTQGRLD 341
>gi|317374922|sp|Q013G9.2|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 389
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/384 (57%), Positives = 278/384 (72%), Gaps = 7/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL++NAP +M+EQKF SY R++AIDASM IYQF+I VGRTG + LTNEAGE
Sbjct: 1 MGIKGLTALLSENAPGAMREQKFTSYLDRRVAIDASMHIYQFMIAVGRTGEQTLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGM RT R+LEAG+KP+YVFDG+PP +K ELAKR KR +A L A EAGN
Sbjct: 61 VTSHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKREEAEAALKAAREAGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EK SKRTV+V+K+ + + +L +L+G+P EAP EAEA CAA+CK+G V+AV +ED
Sbjct: 121 QEEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLVWAVGTED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF APR R+LM P S + PV+EF+ K + L LT DQFIDLCIL GCDY D+IR
Sbjct: 181 MDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGCDYTDTIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G +TALKLI++HGSIE ILE I+ E+Y P+DW + AR LFK PEV+ D + + W
Sbjct: 241 GVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFAGARELFKNPEVM-DVSGINLSW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFKPVANTSAPIKRK 359
APDEEGL+ FLV E F DRV +I KA + +SQ RLESFF P S+ I ++
Sbjct: 300 KAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFFGPPKIISSTIGKR 359
Query: 360 EPENT-----PKATTNKKSKAGGG 378
+ E T KA NKKSK G
Sbjct: 360 KVEETKSGKGSKAGLNKKSKGVSG 383
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/362 (55%), Positives = 277/362 (76%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGAEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELA+R +R++A L EA EAG
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELARRTERRSEAEKHLQEAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+VYA A+ED
Sbjct: 120 ETNIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + +IL++L LT +QF+DLCIL GCDYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+VV ++ +++KW
Sbjct: 240 GIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVVNPDD-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V + KRKE
Sbjct: 299 TEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGSITSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|410974093|ref|XP_003993482.1| PREDICTED: flap endonuclease 1 [Felis catus]
Length = 380
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/383 (54%), Positives = 286/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 GEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYSVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK + KK+K G GG KR
Sbjct: 358 PE--PKGSAKKKAKTGAGGKFKR 378
>gi|81883819|sp|Q5XIP6.1|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
Length = 380
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 286/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+Y+FDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+S+R
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EAR+LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 358 PEPKGPAKKKAKT---GGAGKFRR 378
>gi|340367941|ref|XP_003382511.1| PREDICTED: flap endonuclease 1-like [Amphimedon queenslandica]
Length = 373
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/359 (56%), Positives = 275/359 (76%), Gaps = 2/359 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KLL D AP S+KE +++SYFGRKIAIDASMS+YQFLI V + G ++L E+GE
Sbjct: 1 MGIHGLSKLLGDYAPSSIKEHEYKSYFGRKIAIDASMSLYQFLIAVRQDG-QVLMTESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR+++ G+KP+YVFDG+PP +K ELAKR +RA+A +L +A E G+
Sbjct: 60 TTSHLMGFFYRTIRMVDNGIKPVYVFDGKPPTMKSGELAKRADRRAEAQKELLKAEEQGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+++EKF KR VKVT +H + K+LL LMG+P VEAP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 IQEVEKFQKRLVKVTPEHVSEAKKLLSLMGIPYVEAPCEAEAQCAALTKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ +R+L +RK+PV E ++K L EL++ QFIDLCIL GCDYCDSI+
Sbjct: 180 MDALTFGSSILVRNLTASEARKLPVREINLSKALTELDMDQSQFIDLCILLGCDYCDSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG A+KL+RQHG+IE IL+ ++ ++YQIPE+WP++EARRLF EP+ V+ + +++KW
Sbjct: 240 GIGPVNAMKLLRQHGNIEKILKGLSGKKYQIPENWPFEEARRLFVEPD-VSPADDIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
PDEEG++ FLV E GF+ DR+ ++K+ +K S+QGRL+SFFK + A IKRK
Sbjct: 299 GNPDEEGIVKFLVEEKGFSEDRIRNGVKKLLKSKQGSTQGRLDSFFKAAPSPKAGIKRK 357
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/383 (54%), Positives = 285/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGV 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE A K+ GG G KR
Sbjct: 358 PEPKGPAKKKAKT--GGAGKFKR 378
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/362 (55%), Positives = 277/362 (76%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+Y+FDG+PP LK +LAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSAQLAKRSERRAEAEKQLQQAQEAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+S+R
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EAR+LF EPEVV D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQLFLEPEVV-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 285/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 358 PEPKGPAKKKAKT---GGAGKFRR 378
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 285/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGVKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 358 PEPKGPAKKKAKT---GGAGKFRR 378
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 285/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 53 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 111
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 112 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 171
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 172 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 231
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 232 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 291
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 292 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 350
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 351 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 409
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 410 PEPKGPAKKKAKT---GGAGKFRR 430
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 285/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 17 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 75
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 76 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 135
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 136 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 195
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 196 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 255
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 256 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 314
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 315 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 373
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 374 PEPKGPAKKKAKT---GGAGKFRR 394
>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
Length = 411
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 285/384 (74%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 358 PEPKGPAKKKAKT---GGAGKFRR 378
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/390 (56%), Positives = 287/390 (73%), Gaps = 7/390 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+KLLA+++P E+KF+SY RKIAIDASM IYQ+L+VVGR+G LT+E G+
Sbjct: 1 MGIKGLSKLLAEHSPGCSMERKFQSYLDRKIAIDASMHIYQYLMVVGRSGESQLTDENGQ 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VT+HL G+ +RT R+LEAG+KP+YVFDG+PP LK ELAKR KR A DL A E G+
Sbjct: 61 VTAHLIGVLSRTCRMLEAGIKPVYVFDGKPPTLKGGELAKRKDKRDQAEKDLEVARETGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ IEK +KRTV+V+K+ N + RL+KL+GVPV EAP EAEA CAA+CK+G V+ A+ED
Sbjct: 121 KDAIEKAAKRTVRVSKEQNQEVMRLVKLLGVPVFEAPCEAEATCAAMCKAGLVHGAATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF PR +R+LM P+S+K + E++ K+L+ L+L DQFIDLCIL GCDY DSIR
Sbjct: 181 MDTLTFACPRLIRNLMAPASQKKDIAEYDFDKVLKGLDLDYDQFIDLCILCGCDYTDSIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG TAL+LIR++ +IETILENI ++Y +PE++ Y+EAR+LFKEPEV+ D L++KW
Sbjct: 241 GIGPVTALQLIREYKNIETILENIKDKKYVVPENFMYKEARQLFKEPEVI-DTNNLELKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK-NKSSQGRLESFFKPVANTSAPI-KR 358
S P+EEG+I FLV E FN +RV A+ +IK AK +SQ RLESFF S+ I KR
Sbjct: 300 SKPNEEGVIEFLVKEKSFNEERVRNALARIKKAKAGVASQNRLESFFGAATVKSSTIGKR 359
Query: 359 KEPENT--PKATTN--KKSKAGGGGGRKRK 384
KE E K KKSK GG + +K
Sbjct: 360 KELEKKKGSKGVVGGFKKSKGVGGFSKSKK 389
>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
Length = 380
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 288/383 (75%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CKRLL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKRLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL S+K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASESKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE P+ +T KK+K G G KR
Sbjct: 358 PE--PRGSTKKKAKTGAAGKFKR 378
>gi|149390675|gb|ABR25355.1| endonuclease putative [Oryza sativa Indica Group]
Length = 262
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/253 (82%), Positives = 226/253 (89%), Gaps = 3/253 (1%)
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVAS
Sbjct: 1 GVKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVAS 60
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
EDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCDS
Sbjct: 61 EDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDS 120
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
I+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D +L
Sbjct: 121 IKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL-- 178
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 358
KW+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPV +TS P+KR
Sbjct: 179 KWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKR 238
Query: 359 KEPENTP-KATTN 370
K+ P KA N
Sbjct: 239 KDTSEKPTKAVAN 251
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 278/369 (75%), Gaps = 5/369 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A + G
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKRLQQAQDVGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ED+EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEDVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATT 369
PE PK +
Sbjct: 358 PE--PKGSV 364
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 284/384 (73%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YV DG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVLDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 358 PEPKGPAKKKAKT---GGAGKFRR 378
>gi|403255047|ref|XP_003920260.1| PREDICTED: flap endonuclease 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403255049|ref|XP_003920261.1| PREDICTED: flap endonuclease 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 287/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL S+K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASESKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPTKYPVPENWLHREAHQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGAAGKIKR 378
>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1 isoform 1 [Pongo abelii]
gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1 isoform 2 [Pongo abelii]
gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
gi|397516600|ref|XP_003828512.1| PREDICTED: flap endonuclease 1 isoform 1 [Pan paniscus]
gi|397516602|ref|XP_003828513.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan paniscus]
gi|410045196|ref|XP_003951955.1| PREDICTED: flap endonuclease 1 [Pan troglodytes]
gi|426368750|ref|XP_004051365.1| PREDICTED: flap endonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426368752|ref|XP_004051366.1| PREDICTED: flap endonuclease 1 isoform 2 [Gorilla gorilla gorilla]
gi|426368754|ref|XP_004051367.1| PREDICTED: flap endonuclease 1 isoform 3 [Gorilla gorilla gorilla]
gi|729475|sp|P39748.1|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
IV; AltName: Full=Flap structure-specific endonuclease
1; AltName: Full=Maturation factor 1; Short=MF1;
Short=hFEN-1
gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
Peptide, 380 aa]
gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|410220904|gb|JAA07671.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410267972|gb|JAA21952.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410301536|gb|JAA29368.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410335329|gb|JAA36611.1| flap structure-specific endonuclease 1 [Pan troglodytes]
Length = 380
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 287/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGAAGKFKR 378
>gi|74219985|dbj|BAE40572.1| unnamed protein product [Mus musculus]
Length = 380
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 284/384 (73%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+E
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEG 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 358 PEPKGPAKKKAKT---GGAGKFRR 378
>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
Length = 381
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/383 (55%), Positives = 287/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGAAGKFKR 378
>gi|126344550|ref|XP_001362314.1| PREDICTED: flap endonuclease 1-like [Monodelphis domestica]
Length = 380
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/362 (55%), Positives = 271/362 (74%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G +ML NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RHGGDMLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A++AG
Sbjct: 60 ATSHLVGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRGERRAEAERQLQQALDAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+ +KFSKR VKVTK+HND+CK+LL+LMG+P +EAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 QEEADKFSKRLVKVTKEHNDECKQLLRLMGIPYLEAPGEAEASCAALAKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+ L LT +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQGLGLTQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QH SIE I+ ++ +Y +PE+W ++EA+ LF EP+V+ D +++KW
Sbjct: 240 GIGPKRAIDLIQQHKSIEEIIRKLDPSKYPVPENWLHKEAQHLFLEPDVL-DVNTVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ F+ E FN DRV + ++ ++ S+QGRL+ FFK V KRK
Sbjct: 299 GEPDEEGLVQFMCGEKQFNEDRVRNGVRRLSKSRQGSTQGRLDDFFK-VTGCLTSAKRKG 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
gi|441604271|ref|XP_004087863.1| PREDICTED: flap endonuclease 1 [Nomascus leucogenys]
Length = 380
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/383 (54%), Positives = 286/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHHLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGAAGKFKR 378
>gi|395545349|ref|XP_003774565.1| PREDICTED: flap endonuclease 1 [Sarcophilus harrisii]
Length = 380
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/362 (58%), Positives = 278/362 (76%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 ATSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQLQQAQEAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+ EKF+KR VKVTKQHN++CKRLL+LMG+P +EAPSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEAEKFAKRLVKVTKQHNEECKRLLRLMGIPYLEAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+ L LT +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQGLGLTQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QH SIE IL ++ ++Y +P++W ++EA+RLF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAMDLIQQHKSIEEILRRLDPKKYPVPDNWLHKEAQRLFLEPEVL-DAEAVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGL+ F+ E FN DRV A++++ ++ S+QGRL+ FFK V KRKE
Sbjct: 299 SEPDEEGLVEFMCGEKQFNEDRVRNAVKRLSKSRQGSTQGRLDDFFK-VTGCLTSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
Length = 380
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQLQQAQAAGV 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>gi|444513068|gb|ELV10260.1| Flap endonuclease 1 [Tupaia chinensis]
Length = 380
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 289/383 (75%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G +ML NE G+
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDMLQNEEGD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKFSKR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFSKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L+ +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLSQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGAAGKFKR 378
>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/382 (54%), Positives = 286/382 (74%), Gaps = 5/382 (1%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV 61
GI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGET 59
Query: 62 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 121
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG +
Sbjct: 60 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE 119
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
+++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDM
Sbjct: 120 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 179
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
D LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRG
Sbjct: 180 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239
Query: 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 301
IG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KWS
Sbjct: 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKWS 298
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKEP
Sbjct: 299 EPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKEP 357
Query: 362 ENTPKATTNKKSKAGGGGGRKR 383
E PK +T KK+K G G KR
Sbjct: 358 E--PKGSTKKKAKTGAAGKFKR 377
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/346 (57%), Positives = 264/346 (76%), Gaps = 2/346 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE + +++FGRKIAIDASMS+YQFLI V G + LT+ GE
Sbjct: 1 MGITGLAKLIADFAPNAIKENEIKNHFGRKIAIDASMSLYQFLIAVRSEGAQ-LTSADGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F RTIRLLE G+KP+YVFDG+PP +K EL KR +R +A L +A EAG+
Sbjct: 60 TTSHIMGTFYRTIRLLENGIKPVYVFDGKPPQMKSSELEKRADRRQEAQKSLEKAEEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
I+KFSKR VKVT H +CK LLKLMGVP VEAP EAEAQCAA+ K+G+VYA A+ED
Sbjct: 120 ATGIDKFSKRLVKVTSTHTTECKELLKLMGVPFVEAPCEAEAQCAAMVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LRH+ +RK+P+ EF++ +LE + ++ D+FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSPVLLRHMTFSEARKMPIQEFQLDSVLETMEMSRDEFIDLCILLGCDYCNSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++L+RQ+ S+E I+EN++ ++YQ+PEDWPY+EARRLF EPE +TD E + +KW
Sbjct: 240 GVGPKRAIELMRQYKSLENIIENLDTKKYQVPEDWPYKEARRLFIEPE-ITDPETIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
PDEEGL+ FL GFN DRV +K+ A++ ++QGRL+SFF
Sbjct: 299 IDPDEEGLVKFLCGNRGFNEDRVRNGAKKLIKARSGTTQGRLDSFF 344
>gi|388454741|ref|NP_001252879.1| flap endonuclease 1 [Macaca mulatta]
gi|402893159|ref|XP_003909769.1| PREDICTED: flap endonuclease 1 isoform 1 [Papio anubis]
gi|402893161|ref|XP_003909770.1| PREDICTED: flap endonuclease 1 isoform 2 [Papio anubis]
gi|75076152|sp|Q4R5U5.1|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
gi|355566422|gb|EHH22801.1| Flap endonuclease 1 [Macaca mulatta]
gi|355752043|gb|EHH56163.1| Flap endonuclease 1 [Macaca fascicularis]
gi|380787489|gb|AFE65620.1| flap endonuclease 1 [Macaca mulatta]
gi|383413161|gb|AFH29794.1| flap endonuclease 1 [Macaca mulatta]
gi|384939550|gb|AFI33380.1| flap endonuclease 1 [Macaca mulatta]
Length = 380
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 287/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF +PEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAHQLFLKPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGAAGKFKR 378
>gi|432089490|gb|ELK23431.1| Flap endonuclease 1 [Myotis davidii]
Length = 380
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 276/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMIENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLHQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF PEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLAPEVL-DPEAVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P EE L+ F+ E F+ +R+ + ++ ++ S+QGRLE FFK V + + KRKE
Sbjct: 299 SEPKEEELVKFMCGEKQFSEERIRSGVRRLNKSRQGSTQGRLEDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/379 (56%), Positives = 276/379 (72%), Gaps = 5/379 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE++ + YFGRK+AIDASM +YQFLI V G ++ T + GE
Sbjct: 1 MGILGLAKLIADIAPHAIKEKELKHYFGRKVAIDASMCLYQFLIAVRSEGAQLATVD-GE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRL+E G+KPIYVFDG+PP+LK ELAKR KR +A L A EAGN
Sbjct: 60 TTSHLMGMFYRTIRLVEQGIKPIYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKF++R VKVT+ H D+ K+LLKLMG+P VEAP EAEAQCAAL K+G+V+A A+ED
Sbjct: 120 AEDIEKFNRRLVKVTQVHADEAKQLLKLMGIPYVEAPCEAEAQCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV EF K+LE L L D+FIDLCI+ GCDY +SI+
Sbjct: 180 MDALTFGCNVLLRRLTFSEARKMPVQEFHHDKVLEGLGLNQDEFIDLCIMLGCDYTNSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H S+E ILEN++ +Y +PEDW Y++AR LF+EPEV EE ++ KW
Sbjct: 240 GVGPKRAMELIKTHRSLEKILENLDTNKYPVPEDWNYKQARLLFQEPEVANVEE-IEFKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDE+GL+NFL + F+ +RV +K+ A++ S+QGRL++FFK + N + KRK
Sbjct: 299 SEPDEDGLVNFLCGDKQFSEERVRNGAKKLYKARHTSTQGRLDTFFKVLPNQNPSPKRKA 358
Query: 361 PENTPKATTNKKSKAGGGG 379
E T NKKSK G G
Sbjct: 359 EEKT---VANKKSKKGTAG 374
>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
gi|317376193|sp|C8BKD0.1|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
Length = 380
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/383 (54%), Positives = 283/383 (73%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 ETEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK KK + G G KR
Sbjct: 358 PE--PKGAAKKKQRLGPAGKFKR 378
>gi|395852526|ref|XP_003798789.1| PREDICTED: flap endonuclease 1 [Otolemur garnettii]
Length = 380
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 286/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+Y+FDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + +IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y IPE+W ++EA +LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPIPENWLHKEAHQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK +T KK+K G G KR
Sbjct: 358 PE--PKGSTKKKAKTGTAGKFKR 378
>gi|321473340|gb|EFX84308.1| hypothetical protein DAPPUDRAFT_47502 [Daphnia pulex]
Length = 374
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/357 (55%), Positives = 268/357 (75%), Gaps = 4/357 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT+++ D AP ++KE + ++YFGRK+AIDASMSIYQFLI V R+ MLT+ GE
Sbjct: 1 MGIKGLTQVIGDTAPTAIKENEIKNYFGRKVAIDASMSIYQFLIAV-RSEGAMLTSADGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR+++ G+KP+YVFDG+PPD+K EL KR KR +A+ L A +AG+
Sbjct: 60 TTSHLMGIFYRTIRMVDNGIKPVYVFDGKPPDMKGGELTKRAEKREEASKQLVLATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++EK +KR VKV K H D+CK+LL LMG+P VEAP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 AVEMEKMNKRLVKVNKGHTDECKQLLTLMGIPYVEAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ LR+L ++K+P+ EF + KIL+ L+ TMD+FIDLCI+ GCDYCD+I+
Sbjct: 180 MDSLTFGSNVLLRYLTYSEAKKMPIKEFHLDKILDGLSYTMDEFIDLCIMLGCDYCDTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A +LI +H IE ++EN++ ++Y +PE+WPYQEARRLFK P+V D E L +KW
Sbjct: 240 GIGAKRAKELIDKHRCIEKVIENLDTKKYTVPENWPYQEARRLFKTPDVA-DAETLDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVANTSAP 355
+ PDEEGL+ F+ + FN +R+ +K+ AK +QGRL+SFFK P + S P
Sbjct: 299 TQPDEEGLVKFMCGDKNFNEERIRSGAKKLCKAKTGQTQGRLDSFFKVLPSSKPSTP 355
>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
Length = 389
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/384 (53%), Positives = 278/384 (72%), Gaps = 8/384 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L+K++ DNA K++K + +SYFGRK+AIDASMSIYQFLI V + G ++ N GE
Sbjct: 1 MGVHQLSKVIGDNAQKAVKSCEIKSYFGRKVAIDASMSIYQFLIAVRQEGNTLM-NAEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E+G+KP+YVF+G+PP +K ELAKR +R ++T +LA+A +
Sbjct: 60 STSHLMGMFYRTIRMIESGIKPVYVFEGKPPSMKAGELAKRADRRIESTKELAKAEAEED 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E IEKFSKR VKVT HN+DCK+LL+LMGVP V AP EAEAQCAAL KSG+VYAV +ED
Sbjct: 120 LEAIEKFSKRLVKVTPAHNEDCKQLLRLMGVPFVNAPGEAEAQCAALAKSGKVYAVGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FG P LRHL +RK+ + EF +A +LE L+LTMDQF+DLCIL GCDY D+IR
Sbjct: 180 MDALAFGTPVLLRHLTFSEARKMAIQEFNLASVLEGLSLTMDQFVDLCILLGCDYVDTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + AL L+ ++ SI+ +L+NI++ +Y +P DWPY++A++LF PE VTD +++KW
Sbjct: 240 GIGPKKALDLLHKYHSIDCVLKNIDKSKYPVPNDWPYEDAKKLFLNPE-VTDPSLIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ FL ++GFN +R+ +K+ AKN ++QGR+++FF TS P K
Sbjct: 299 DEPDEEGLVEFLCHKHGFNEERIRNGAKKLFKAKNTTTQGRIDNFF-----TSIPSKNNL 353
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
+ P N K+ + RKRK
Sbjct: 354 LISNPNINCN-KTPSNTMSDRKRK 376
>gi|347838761|emb|CCD53333.1| similar to flap endonuclease 1 [Botryotinia fuckeliana]
Length = 395
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 263/369 (71%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ D AP ++KE + ++ FGRK+AIDASMSIY FLI V R+G EMLTNE GE
Sbjct: 1 MGIKQLMSIIKDEAPDAVKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSGGEMLTNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++A AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCAAL ++G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAALARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + K+L LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLTGLNMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
IG TALKLIR+HG +ET++ I +ERY IPEDWPYQ+AR LF +P+V D E
Sbjct: 240 KIGPHTALKLIREHGDLETLVAWITADKKERYAIPEDWPYQDARELFFKPDVRPADHEDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E GF+ DRV A +++ S Q RLE FFKP+ T
Sbjct: 300 DFKWEAPDVEGLVKFLVIEKGFSEDRVRSAAQRLTKNLKSSQQARLEGFFKPIPKTDEER 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ANLKRKNDE 368
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/385 (52%), Positives = 282/385 (73%), Gaps = 6/385 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++EQ+ ++YFGRKIAIDASMSIYQFLI V G ++L E+GE
Sbjct: 1 MGIQGLAKLIADIAPGAIREQELKNYFGRKIAIDASMSIYQFLIAVRHDG-QVLQTESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E+G+KP+YVFDG+PPD+K ELAKR +R++A LA+A EAG+
Sbjct: 60 TTSHLMGMFYRTIRMVESGIKPVYVFDGKPPDMKSGELAKRNERRSEAEKQLAQAQEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++E+F+KR VKVTKQHN++CK LL LMG+P +EAP EAEA CAAL KSG+VY A+ED
Sbjct: 120 SENVERFNKRLVKVTKQHNEECKTLLTLMGIPYLEAPCEAEASCAALVKSGKVYGTATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD L FG LR + ++K+P+ EF + KIL+E L+ ++FIDLCIL GCDYC++IR
Sbjct: 180 MDGLAFGTTILLRRMTASEAKKLPIQEFHLNKILQETGLSQEEFIDLCILLGCDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LIRQH IE +L++I+ +Y +P DW Y +AR LF P+VV + + +++KW
Sbjct: 240 GIGPKRAIELIRQHRCIEEVLKHIDGNKYTVPGDWAYSQARSLFLTPDVV-NVDDVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ P+E+ L++FL + GF+ DR+ +K+ ++ S+QGRL+ FFK V + KRKE
Sbjct: 299 TEPEEDKLVSFLCEDKGFSEDRIRNGAKKLVRSRQGSTQGRLDDFFK-VTGSLTSAKRKE 357
Query: 361 PENTPKATTNKKSKAGG-GGGRKRK 384
P + K+S+ G G+ R+
Sbjct: 358 P--VVSGSAKKRSRGGSTNAGKSRR 380
>gi|729476|sp|P39749.1|FEN1_MOUSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|499649|gb|AAC37664.1| endonuclease-1 [Mus musculus]
Length = 378
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 283/384 (73%), Gaps = 8/384 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TS L GMF RTIR+ E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 118 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 178 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEVV D E +++KW
Sbjct: 238 GIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-DPESVELKW 296
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 297 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 355
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 356 PEPKGPAKKKAKT---GGAGKFRR 376
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 269/346 (77%), Gaps = 2/346 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++++AD+AP ++K Q+ +++FGRK+AIDASM +YQFLI + + G++M +E GE
Sbjct: 1 MGIKGLSQVIADHAPSAIKVQEIKAFFGRKVAIDASMCLYQFLIAIRQDGSQM-QSEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PPD+K EL KR +RA+A L EA E G+
Sbjct: 60 TTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTERRAEAEKALTEAKEKGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ EKF +R VKVTKQ N++ K+LL LMG+PVVEAP EAEAQCA L K+G+VY A+ED
Sbjct: 120 AKEAEKFERRLVKVTKQQNEEVKQLLGLMGIPVVEAPCEAEAQCANLVKAGKVYGTATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL+ P ++KIP+ EF +A++LEE+ LT DQFIDLCIL GCDYC +IR
Sbjct: 180 MDALTFGSCVLLRHLLAPEAKKIPIKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+QH +IET+LENI++ +Y P DWPY+ AR LF EPEV+ +E +++ W
Sbjct: 240 GIGPKKAVELIKQHKNIETVLENIDQTKYPPPADWPYKRARELFHEPEVMKCDE-VELTW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
PD EG++ F+ E F+ DR+ A+ +++ ++N +QGR++SFF
Sbjct: 299 KDPDVEGIVKFMCGEKNFSEDRIRSAMVRMQKSRNAGTQGRIDSFF 344
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/385 (55%), Positives = 269/385 (69%), Gaps = 7/385 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD P+++KE ++YFGRK+AIDASM +YQFLI V G + LTN GE
Sbjct: 1 MGILGLSKLIADICPQAIKESDIKNYFGRKVAIDASMCLYQFLIAVRAEGAQ-LTNVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLLE G+KP+YVFDG+PP K ELAKR +R DA L +A EAGN
Sbjct: 60 TTSHLMGMFYRTIRLLENGIKPVYVFDGKPPISKSGELAKRAERREDAQKALEKATEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ D++KF++R VKVTK+H ++ K LLKLMGVP VEAP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 EADMDKFNRRLVKVTKEHANEAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+PV EF AK+L+ LT +FIDLCIL GCDYCD IR
Sbjct: 180 MDALTFGSGILLRHLTFSEARKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A +L+ + IETILE I+R++Y +PEDW YQ AR LF PE V D L++KW
Sbjct: 240 GIGPKRATELMNSYKDIETILEKIDRKKYTVPEDWNYQIARELFVNPE-VADPSSLELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVANTSAPIKR 358
PDE+GL+ F + FN DRV +KI K+ +QGRL+SFFK P A + P ++
Sbjct: 299 FDPDEDGLVRFFCGDRQFNEDRVRSGAKKILKCKSSQTQGRLDSFFKVIPAACGTTPKRK 358
Query: 359 KEPENTPKATTNKKSKAGGGGGRKR 383
+ +N KKSK G KR
Sbjct: 359 ADDKNN---VQQKKSKTAGNTKGKR 380
>gi|57099749|ref|XP_533271.1| PREDICTED: flap endonuclease 1 isoform 1 [Canis lupus familiaris]
Length = 380
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/383 (54%), Positives = 285/383 (74%), Gaps = 5/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + +IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
PE PK + KK+K G G KR
Sbjct: 358 PE--PKGSAKKKAKTGVAGKFKR 378
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/346 (54%), Positives = 268/346 (77%), Gaps = 2/346 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++++ADNAP ++K + +++FGRK+AIDASM +YQFLI V + G++ L +E GE
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEIKAFFGRKVAIDASMCLYQFLIAVRQDGSQ-LQSEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PPD+K EL KR +RA+A L EA E G+
Sbjct: 60 TTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAEKALTEAKEKGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ EKF +R VKVTKQ N++ K LL LMG+PVVEAP EAEAQCA L K+G+V+ A+ED
Sbjct: 120 AKEAEKFERRLVKVTKQQNEEVKHLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL+ P S+KIP+ EF +A++LEE+ L+ D+FIDLCIL GCDYC +IR
Sbjct: 180 MDALTFGSSVLLRHLLAPESKKIPIKEFHLARVLEEMKLSEDEFIDLCILLGCDYCGTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LIRQH +IET+LENI++ +Y PEDWPY+ AR LF+EPEV T E +++ W
Sbjct: 240 GVGPKKAVELIRQHKNIETVLENIDQTKYPPPEDWPYKRARELFREPEV-TKGEDVELTW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
PD EG++ F+ + F+ +R+ A+ +++ ++N +QGR++SFF
Sbjct: 299 KEPDVEGIVKFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFF 344
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/359 (55%), Positives = 275/359 (76%), Gaps = 5/359 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KE + ++YFGRK+AIDASMSIYQFLI V R+ +LTNEAGE
Sbjct: 1 MGIHGLAKLIADHAPSAIKENEIKNYFGRKVAIDASMSIYQFLIAV-RSDGNVLTNEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E G+KP+YVFDG+PP LK ELA+R +R +A +EA + G+
Sbjct: 60 TTSHLMGLFYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQERREEAQKQASEAEKEGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++I+KF++RTV++T +H ++ K+LLKLMGVPVV+AP EAE+QCAAL K+G+VYA +ED
Sbjct: 120 ADNIDKFTRRTVRMTPEHCEEGKKLLKLMGVPVVQAPCEAESQCAALVKAGKVYATGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+P+ EF + L+ELN +M+QFIDLCIL GCDYCDSI+
Sbjct: 180 MDALTFGSNVMLRHLTFSEARKMPIQEFHLKNALQELNFSMEQFIDLCILLGCDYCDSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A+ LI ++ SIE I++NI+ E++ +PE+WPY++AR LF P+V E+ +++KW
Sbjct: 240 GVGPKRAVGLIEKYKSIEDIVKNISSEKFTVPENWPYKDARMLFLNPDVEKCED-MELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
+ PD + L+ FLV E GF+ DR+ + +EKI A+ S+QGRL+SFF T IKRK
Sbjct: 299 TEPDADELVKFLVEEKGFSEDRIRRGVEKISKARGTSTQGRLDSFF---TITPGAIKRK 354
>gi|224050601|ref|XP_002192880.1| PREDICTED: flap endonuclease 1 [Taeniopygia guttata]
Length = 386
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/362 (56%), Positives = 275/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E ++YFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPGAIRENDIKAYFGRKVAIDASMSIYQFLIAV-RQGADVLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA EAG
Sbjct: 60 TTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHLQEAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+IEK+SKR VKVT QH +CK+LL LMG+P VEAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 EENIEKYSKRLVKVTPQHTQECKKLLTLMGIPYVEAPGEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF + +IL++L LT +QF+DLCIL GCDYC SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLQLTWEQFVDLCILLGCDYCASIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LIR+H SIE I++ ++ ++Y +PE+W ++EA++LF EP+V+ D + +++KW
Sbjct: 240 GIGPKRAVELIREHKSIERIVQQLDTKKYPLPENWLHREAQKLFLEPDVI-DPDAVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V + KRKE
Sbjct: 299 SEPDEEQLVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGSITSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|443720454|gb|ELU10206.1| hypothetical protein CAPTEDRAFT_21886 [Capitella teleta]
Length = 377
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/362 (56%), Positives = 277/362 (76%), Gaps = 4/362 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL+K++ D AP ++KE + +++FGRK+AIDASM IYQFLI V + G MLTN GE
Sbjct: 1 MGIQGLSKVIGDYAPSAVKENEIKNFFGRKVAIDASMCIYQFLIAVRQEGN-MLTNADGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG+PPD+K EL+KR +R +A L +A EAG
Sbjct: 60 TTSHLMGIFYRTLRMIDHGIKPVYVFDGKPPDMKSGELSKRAGRREEAQKALEKAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFSKR VKVTK+HN++CK+LL LMG+P VEAP EAEAQCA+L K G VYA +ED
Sbjct: 120 AENVEKFSKRLVKVTKEHNEECKQLLGLMGIPFVEAPCEAEAQCASLVKGGHVYATGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+P+ EF + K+L L L+ ++FIDLCIL GCDYCDSIR
Sbjct: 180 MDALTFGSTVLLRHLTFSEARKMPIKEFSLEKVLAGLELSYEEFIDLCILLGCDYCDSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI+QH SIE +L+NI+ ++Y IPEDWP+++AR LFK+P+V+ D E +++KW
Sbjct: 240 GIGPKRAVDLIKQHRSIEAVLKNIDTKKYTIPEDWPFEQARELFKQPDVLKDSE-VELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ P EE LI F+V E GFN DR+ +K++ A++ S+QGRL+SFFK + TS KRK
Sbjct: 299 TEPKEEELIKFMVEEKGFNEDRIRNGCKKLQKARHGSTQGRLDSFFKVTSTTST--KRKS 356
Query: 361 PE 362
E
Sbjct: 357 TE 358
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/384 (52%), Positives = 273/384 (71%), Gaps = 6/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++L+++AP S+K ++YFGRK+AIDASMS+YQFLI V + L NE GE
Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP +VFDG+PP LK ELAKR ++ A +D E E G
Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++F+KRTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+VYA ASED
Sbjct: 121 AEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E+ + K L L+++++QF+DLCIL GCDYC+ IR
Sbjct: 181 MDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G A++LIRQ+G+++ ++ +R +Y IPEDWPY++ARRLF + EV+ EE +++KW
Sbjct: 241 GVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEE-IELKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+PD +G+I FLV E GFN DRV I +++ A QGRL+SFFKPV P K+
Sbjct: 300 KSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPV-----PSSPKK 354
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
P +T + K+ + GG +K
Sbjct: 355 PVDTKSKGSAKRKRDSNKGGESKK 378
>gi|13506617|gb|AAK01853.1| flap endonuclease-1 [Mus musculus]
Length = 378
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 282/384 (73%), Gaps = 8/384 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TS L GMF RTIR+ E G+KP+YVFDG+PP LK ELAKR +RA+A L +A EAG
Sbjct: 60 TTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 118 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 178 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEVV D E +++KW
Sbjct: 238 GIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-DPESVELKW 296
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FF V + + KRKE
Sbjct: 297 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFN-VTGSLSSAKRKE 355
Query: 361 PENTPKATTNKKSKAGGGGGRKRK 384
PE A K+ GG G+ R+
Sbjct: 356 PEPKGPAKKKAKT---GGAGKFRR 376
>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 382
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/362 (56%), Positives = 272/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+A+DASM IYQFLI V + G ML NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-MLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMGVP V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFNKRLVKVTKQHNEECKKLLTLMGVPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++++++ ++ +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVMQDMGVSHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH SIE I++NI+ ++Y IPE+W ++EAR+LF EPEVV D E ++KW
Sbjct: 240 GIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENWLHKEARQLFLEPEVV-DTESTELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ F+ +E F+ DR+ +K+ + S+QGRL+ FFK V + + KRKE
Sbjct: 299 IEPDEEGLVAFMCAEKQFSEDRIRNGAKKLSKNRQGSTQGRLDDFFK-VTGSISSTKRKE 357
Query: 361 PE 362
E
Sbjct: 358 VE 359
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 277/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 14 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 72
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 73 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 132
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 133 GEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATED 192
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 193 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 252
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 253 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPEAVELKW 311
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 312 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 370
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 371 PE--PKGS 376
>gi|317376168|sp|B1H158.1|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
tropicalis]
Length = 382
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/362 (56%), Positives = 272/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+A+DASM IYQFLI V + G ML NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-MLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMGVP V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFNKRLVKVTKQHNEECKKLLTLMGVPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++++++ ++ +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVMQDMGVSHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH SIE I++NI+ ++Y IPE+W ++EAR+LF EPEVV D E ++KW
Sbjct: 240 GIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENWLHKEARQLFLEPEVV-DTESTELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ F+ +E F+ DR+ +K+ + S+QGRL+ FFK V + + KRKE
Sbjct: 299 IEPDEEGLVAFMCAEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK-VTGSISSTKRKE 357
Query: 361 PE 362
E
Sbjct: 358 VE 359
>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
Length = 380
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 277/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 GEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPEAVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 274/384 (71%), Gaps = 7/384 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI LTK LAD AP +KE +SYFGRK+AIDASMS+YQFLI V G + LT GE
Sbjct: 1 MGILNLTKFLADVAPHCIKETDIKSYFGRKVAIDASMSLYQFLIAVRSEGAQ-LTTADGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRLLE G+KP+YVFDG+PP++K EL KR KRA+A L +A+EAG+
Sbjct: 60 PTSHLVGTFYRTIRLLEHGIKPVYVFDGKPPEMKGGELNKRMEKRAEAQKALDKAMEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +++KF++R VKVT+ H D+ K LL+LMGVP +EAP EAEAQCAA+ K+G++YA A+ED
Sbjct: 120 QAEVDKFNRRLVKVTRHHADEAKELLRLMGVPYIEAPCEAEAQCAAMVKAGKIYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+P+ E + +L+ELNL+ +FID CIL GCDY DSIR
Sbjct: 180 MDALTFGSDIVLRHLTFSEARKMPIQEIHLKIVLQELNLSQTEFIDFCILMGCDYTDSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + +++LI+ H SIE ILENI++ +Y PEDW Y+ AR LF +PE ++D + +++KW
Sbjct: 240 GIGPKKSIELIKNHRSIEKILENIDKSKYPPPEDWNYEGARGLFVKPE-ISDPDSIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEG++ FL F+ DRV I+K++ A+ S+Q RL+ FF + T A K +
Sbjct: 299 GEPDEEGMVKFLCGHRQFSEDRVRNGIKKLQKARGTSTQARLDGFFTVLGTTPAKRKADD 358
Query: 361 PENTPKATTNKKSKAGGGG-GRKR 383
+NTP NK+ K GG G GR R
Sbjct: 359 KKNTP----NKRGKLGGAGKGRGR 378
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/359 (56%), Positives = 269/359 (74%), Gaps = 3/359 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ+ + YFGRKIAIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGILGLAKLIADIAPNAIKEQELKHYFGRKIAIDASMCLYQFLIAVRSEGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRL+E G+KP+YVFDG+PP+LK ELAKR KR +A L A EAGN
Sbjct: 60 TTSHLMGMFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKF++R VKVTK+H D+ K+LLKLMG+P ++AP EAEAQCAA+ K+G+V+A A+ED
Sbjct: 120 AEDIEKFNRRLVKVTKEHADEAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV EF K+LE L L+ D+FIDLCI+ GCDY +SI+
Sbjct: 180 MDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H ++E I+EN++ +++ IPEDW Y++AR LF+EPE VTD E + +KW
Sbjct: 240 GVGPKRAIELIKTHRTLEKIIENLDTKKFPIPEDWNYKQARLLFQEPE-VTDPETIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
PDEE L+ +L + FN +RV +K+ A+N S+QGRL++FFK + N S P KRK
Sbjct: 299 IEPDEENLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKVLPN-STPTKRK 356
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/415 (50%), Positives = 285/415 (68%), Gaps = 37/415 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR------------------- 101
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGV 119
Query: 102 -------------YSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 148
+RA+A L +A EAG +E++EKF+KR VKVTKQHND+CK LL L
Sbjct: 120 EEEVEKFTKLLLKSERRAEAEKQLQQAQEAGVEEEVEKFTKRLVKVTKQHNDECKHLLSL 179
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF 208
MG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P +RHL ++K+P+ EF
Sbjct: 180 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 239
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
++++L+EL L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+ ++ +
Sbjct: 240 HLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNK 299
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y +PE+W ++EA++LF EPEV+ D E +++KWS P+EE L+ F+ E F+ +R+ ++
Sbjct: 300 YPVPENWLHKEAQQLFLEPEVL-DPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVK 358
Query: 329 KIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKR 383
++ ++ S+QGRL+ FFK V + + KRKEPE A K+ GG G KR
Sbjct: 359 RLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKEPEPKGPAKKKAKT--GGAGKFKR 410
>gi|391334775|ref|XP_003741776.1| PREDICTED: flap endonuclease 1-like [Metaseiulus occidentalis]
Length = 379
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/382 (54%), Positives = 270/382 (70%), Gaps = 10/382 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP ++KE + +++FGRKIA+DASM +YQFLI V R MLTN GE
Sbjct: 1 MGIHGLSKLIADVAPGAIKEGEIKNFFGRKIALDASMCLYQFLIAV-RQENNMLTNADGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP+YVFDG+PPD+K EL KR +R +A +L +A E GN
Sbjct: 60 TTSHLVGFFYRTIRMIENGIKPLYVFDGKPPDMKSGELEKRAERREEAQKELDKATEVGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+EDI KF +R VKV+KQHN D +RLL LMGVP + AP EAEAQCA L K+ +VYA A+ED
Sbjct: 120 QEDINKFQRRLVKVSKQHNADAQRLLALMGVPFLVAPCEAEAQCAELVKAQKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFGA LRH+ +RK+P+ EF + KIL ELN T +FIDLCIL GCDYC +I+
Sbjct: 180 MDCLTFGASVLLRHMTFSEARKMPIKEFNLPKILAELNFTQREFIDLCILLGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++L+R H IE +L+NI+ ++Y PEDW ++ AR LF++P+V E L KW
Sbjct: 240 GIGPKRAIELMRSHRCIENVLKNIDTKKYPPPEDWQFERARELFEKPDVTPGSE-LDFKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAP-IKR- 358
+ PDEEGL+ FL ENGFN +R+ +K++ K+ S QGRL+S+FK AN S P +KR
Sbjct: 299 TEPDEEGLVKFLCEENGFNEERIRNGAKKLQKGKSSSQQGRLDSYFK--ANPSTPAVKRK 356
Query: 359 ----KEPENTPKATTNKKSKAG 376
KEP + K T K G
Sbjct: 357 SDIKKEPASVKKTKTKGSFKKG 378
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/365 (54%), Positives = 265/365 (72%), Gaps = 4/365 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++D APK++++ + ++ FGRK+A+DASMSIYQFLI V + + L NE+GE
Sbjct: 1 MGIKGLTNLISDVAPKAIRQLEMKNLFGRKVAVDASMSIYQFLIAVRQQDGQQLMNESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PPDLK L KR++KRA+AT++ +A E G
Sbjct: 61 TTSHLMGFFYRTIRMVENGIKPAYVFDGKPPDLKSGVLKKRFAKRAEATEEGEDAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+I+K S+RTV+VTK+HN++C+RLLKLMG+P + APSEAEAQCA LC+ G VY SED
Sbjct: 121 VEEIDKLSRRTVRVTKEHNEECQRLLKLMGIPFIIAPSEAEAQCAELCRGGLVYGTGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK+P+ E++++L+ + LTMD+FID+CILSGCDY D +
Sbjct: 181 MDTLTFSSPIILRHLTFSEQRKLPIDVIELSEVLKGMELTMDEFIDMCILSGCDYVDPLP 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
IG +TALKLI+ HG ++ ++E + PEDWPY+EAR LFK P+V+ EE + +KW
Sbjct: 241 KIGAKTALKLIKDHGDLDAVVEALKDTPRAAPEDWPYREARELFKHPDVLKAEE-VDLKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA---PIK 357
PD EGL++FLV + GFN DRV K KIK+ QGRL+ FF A + P+K
Sbjct: 300 EDPDIEGLVDFLVRDKGFNEDRVRKGAAKIKSGLQTKQQGRLDGFFTKAAPSGEFINPMK 359
Query: 358 RKEPE 362
RK E
Sbjct: 360 RKAEE 364
>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/362 (55%), Positives = 274/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE LI F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
gi|82071413|sp|P70054.1|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B;
Short=xFEN-1b
gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
Length = 382
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/362 (55%), Positives = 270/362 (74%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+A+DASM IYQFLI V + G ML NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-MLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++ +++ + +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH +IE I++NI+ ++Y IPE+W ++EAR+LF EPEV+ D + ++KW
Sbjct: 240 GIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQLFLEPEVI-DADITELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ F+ E F+ DR+ +K+ + S+QGRL+ FFK V + + KRKE
Sbjct: 299 TEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK-VTGSISSTKRKE 357
Query: 361 PE 362
E
Sbjct: 358 VE 359
>gi|75057714|sp|Q58DH8.1|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|296471658|tpg|DAA13773.1| TPA: flap endonuclease 1 [Bos taurus]
Length = 380
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/362 (55%), Positives = 274/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE LI F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/359 (55%), Positives = 270/359 (75%), Gaps = 3/359 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ+ + YFGRKIAIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGILGLAKLIADIAPNAIKEQELKHYFGRKIAIDASMCLYQFLIAVRSEGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRL+E G+KP+Y+FDG+PP+LK ELAKR KR +A L A EAGN
Sbjct: 60 TTSHLMGMFYRTIRLVEQGIKPVYIFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKF++R VKVTK+H ++ K+LLKLMG+P ++AP EAEAQCAA+ K+G+V+A A+ED
Sbjct: 120 AEDIEKFNRRLVKVTKEHAEEAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV EF K+LE L L+ D+FIDLCI+ GCDY +SI+
Sbjct: 180 MDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H ++E I+EN++ +++ IPEDW Y++AR LF++PE +TD E + +KW
Sbjct: 240 GVGPKRAIELIKTHRTLEKIVENLDTKKFPIPEDWNYKQARLLFQKPE-ITDPETIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
PDEEGL+ +L + FN +RV +K+ A+N S+QGRL++FFK + N S P KRK
Sbjct: 299 IEPDEEGLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKVLPN-STPTKRK 356
>gi|440901464|gb|ELR52399.1| Flap endonuclease 1 [Bos grunniens mutus]
Length = 380
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/362 (55%), Positives = 274/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/360 (55%), Positives = 269/360 (74%), Gaps = 2/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP ++KEQ+ + YFGRK+AIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGILGLSKLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSDGAQ-LTSVHGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PPDLK ELAKR +R + L A EAGN
Sbjct: 60 TTSHLMGTFYRTIRLVEQGIKPVYVFDGKPPDLKGGELAKRDERRDETQKLLQAAEEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+DIEKF++R VKVTK+H + K+LL+LMG+P ++AP EAEAQCAAL K+G+V+A A+ED
Sbjct: 120 AKDIEKFNRRLVKVTKEHALETKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV EF K+LE+L L ++FIDLCI+ GCDY SI+
Sbjct: 180 MDALTFGCNILLRRLTFSEARKMPVQEFHFDKVLEDLGLNHNEFIDLCIMLGCDYTSSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ HGS+E I+EN++ +++ IPEDW Y+EAR LF+EPE VTD E + +KW
Sbjct: 240 GVGPKRAIELIKTHGSLEKIVENLDTKKFSIPEDWNYKEARLLFQEPE-VTDPETINMKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ +L + FN +RV +K+ A+N S+QGRL++FFK + N + P ++ E
Sbjct: 299 TEPDEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPNPPKRKAE 358
>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/362 (55%), Positives = 274/362 (75%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L EA AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+E+ LI F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEKELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PE 362
PE
Sbjct: 358 PE 359
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/268 (72%), Positives = 231/268 (86%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLA +AP + +++ E Y GR IA+DAS+SIYQFL VVGR G+E+LTNEAGE
Sbjct: 1 MGIKGLTKLLAQHAPTAAVQRRVEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHLQGM RTIR+LEAG+KP++VFDG+PP++KK+ELAKR KR DA DL A+E G+
Sbjct: 61 ITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDLNRAMEIGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ IEKFSKRTVKVT +HNDDCKRLL+LMGVPVVEAP EAEAQCAALC++ QVYAVASED
Sbjct: 121 ENAIEKFSKRTVKVTGRHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGA RFLRHL D +K PV EF+V+K+LEEL LTMDQFIDLCILSGCDYC++IR
Sbjct: 181 MDTLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRER 268
GIGGQ ALKLIRQHG IE +L+N+N+ R
Sbjct: 241 GIGGQRALKLIRQHGCIEEVLQNLNQTR 268
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/367 (53%), Positives = 271/367 (73%), Gaps = 4/367 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L KL+AD AP S+KE + ++YFGRK+AIDASMSIYQFLI V + G +LTNE G+
Sbjct: 1 MGIHQLAKLIADCAPSSVKENEMKNYFGRKVAIDASMSIYQFLIAVRQDGN-VLTNEDGD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PPDLK EL+KR KR +A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMVDHGIKPLYVFDGKPPDLKSGELSKRAEKREEAEKALAKAEEEGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ K+ +R VKVTK+HN++CK+LL MG+P ++AP EAEAQCA L K+G+VYA A+ED
Sbjct: 120 TENVNKYQRRLVKVTKEHNEECKKLLTFMGIPYLDAPGEAEAQCAELVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ +RH+ +RK+P E+ + IL EL L+ D+FIDLCIL GCDYCDSIR
Sbjct: 180 MDSLTFGSSTVVRHMTFSEARKMPCQEYNLNNILAELELSQDEFIDLCILLGCDYCDSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH +IE ++ +++ ++Y +P+ W Y+EAR LFK+P VT +++KW
Sbjct: 240 GIGPKRAIDLIRQHKTIEEVIAHLDSKKYTVPDGWLYKEARELFKKPN-VTAGVDIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDE+GLI+++ + GF DR+ +K+ A++ S+QGRL+SFF +A+ S IKRK
Sbjct: 299 IDPDEDGLIDYMSKQKGFAEDRIKNGAKKLLKARHTSTQGRLDSFFSVMASPS--IKRKS 356
Query: 361 PENTPKA 367
++ A
Sbjct: 357 TDSKGSA 363
>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
gi|317374891|sp|B4KNM1.1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
Length = 388
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/390 (53%), Positives = 278/390 (71%), Gaps = 8/390 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP +++E + +++FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKAGELAKRAERREEAEKALKVATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEKF++R V+VTK+H+++ K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 EAEIEKFNRRLVRVTKEHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+L+ L LT +FIDLCIL GCDYCDSI+
Sbjct: 180 MDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCDSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+ + IETILENI+ +Y +PE+W YQ AR LF EPE VTD + +KW
Sbjct: 240 GIGPKRAIELIKTYRDIETILENIDTSKYIVPENWNYQRARELFVEPE-VTDASTIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAPIK 357
+APDE+GL+ FL + FN +RV K+ +K +Q RL+SFFK + N +A K
Sbjct: 299 TAPDEDGLVQFLCGDRQFNEERVRNGARKLLKSKQSQTQVRLDSFFKALPSSPNATAAAK 358
Query: 358 RKEPENTPKATTNKKSKAGGGG---GRKRK 384
RK E A K +GG G GR+ K
Sbjct: 359 RKAEEIKKSANNKKAKTSGGSGAARGRRPK 388
>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
Length = 388
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/366 (54%), Positives = 263/366 (71%), Gaps = 4/366 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L KLLAD AP ++E ++YFGRK+AIDASMS+YQFLI V G +++ N+AGE
Sbjct: 1 MGIHNLAKLLADQAPHCVRENVIKAYFGRKVAIDASMSMYQFLIAVRSEGNQLM-NDAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR+LE G+KP+YVFDG+PP +K ELAKR ++R +A L A EAG
Sbjct: 60 TTSHLVGFFYRTIRMLENGIKPVYVFDGKPPVMKSGELAKRTARREEAQASLDAATEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +EKF +R VKVTK+HN++CKRLL LMGVP + AP EAEAQCAAL KSG V+A +ED
Sbjct: 120 SETMEKFQRRLVKVTKEHNEECKRLLTLMGVPYISAPCEAEAQCAALVKSGSVFAAGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+P+ EF + + LE L LTM+QF+DLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSKVLLRHLTFSEARKMPIKEFNLDRALEGLKLTMEQFVDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG A LI+++ +IE I++N++ E+Y +P +W + EAR LF EPE VT E+L +KW
Sbjct: 240 GIGPTRAYALIQEYKTIEEIIKNLDTEKYPLPANWAFAEARTLFLEPE-VTPGEELDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+APD EGL+ F+V E GF+ DR+ K+ K+ ++QGRL++FF S+ KRK
Sbjct: 299 TAPDVEGLVKFMVQEKGFSEDRIRNNAAKLVDLKSTATQGRLDNFFTVSGVVSS--KRKS 356
Query: 361 PENTPK 366
E K
Sbjct: 357 EEELAK 362
>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
cuniculus]
Length = 380
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E+L NE GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGEVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYAVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSRSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
Length = 382
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/362 (55%), Positives = 269/362 (74%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+AIDASM IYQFLI V + G L NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAIDASMCIYQFLIAVRQDGN-TLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++++++ +T +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D + ++KW
Sbjct: 240 GIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DTDITELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ F+ E F+ DR+ +K+ + S+QGRL+ FFK V + + KRKE
Sbjct: 299 IEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK-VTGSVSSTKRKE 357
Query: 361 PE 362
E
Sbjct: 358 AE 359
>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
Length = 382
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/346 (54%), Positives = 266/346 (76%), Gaps = 2/346 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++++ADNAP ++K + +++FGRK+AIDASM +YQFLI V + G + L +E GE
Sbjct: 1 MGIKGLSQVIADNAPSAIKISEIKAFFGRKVAIDASMCLYQFLIAVRQDGAQ-LQSEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PPD+K EL KR +RA+A L EA E G+
Sbjct: 60 TTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAEKALTEAKEKGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ EKF +R VKVTKQ N+D K+LL LMG+PVVEAP EAEAQCA L K+G+V+ A+ED
Sbjct: 120 AKEAEKFERRLVKVTKQQNEDVKQLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL+ P S+KIP+ EF +A+ILEE+ LT ++FIDLCIL GCDYC +IR
Sbjct: 180 MDALTFGSCVLLRHLLAPESKKIPIKEFHLARILEEMKLTEEEFIDLCILLGCDYCGTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI Q+ +IETILENI+ +Y PEDWPY+ AR LF +P+V T E++++ W
Sbjct: 240 GVGPKRAVELINQYKNIETILENIDLTKYPPPEDWPYKRARELFLQPDV-TKGEEIELTW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
PD EG++ F+ + F+ +R+ A+ +++ ++N +QGR++SFF
Sbjct: 299 KEPDVEGIVRFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFF 344
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/362 (55%), Positives = 268/362 (74%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KLL+D AP ++K ++YFGRKIAIDASM++YQFLI V G + LT+ +GE
Sbjct: 1 MGILGLNKLLSDVAPNAIKFSDIKNYFGRKIAIDASMTLYQFLIAVRSEGAQ-LTDSSGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP+YVFDG+PP+LK EL+KR KR +A LA+A E+GN
Sbjct: 60 TTSHLMGTFYRTIRMVENGIKPVYVFDGKPPELKSGELSKRAEKREEAQKALAKAEESGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++KFS+R VKVTK H +CK LLKLMG+P +EAP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 TEEVDKFSRRLVKVTKDHVAECKELLKLMGIPYIEAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+PV E + K+L EL +T ++FIDLCIL GCDYCDSI+
Sbjct: 180 MDALTFGSNIILRHLTFSEARKMPVQEIYLDKVLAELEMTQNEFIDLCILLGCDYCDSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI++H S+E ILEN++ +Y +PEDW +QEAR+LF P+V D +++KW
Sbjct: 240 GIGPKRAIELIKKHKSLEKILENLDSGKYVVPEDWIFQEARKLFINPDVC-DASNVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PD EGL+ +L + FN +RV +K+ + +QGRL++FFK V +TS KRK
Sbjct: 299 NEPDTEGLVKYLCGDKLFNEERVRNGAKKLLKGRTGQTQGRLDTFFK-VISTSPAKKRKV 357
Query: 361 PE 362
E
Sbjct: 358 EE 359
>gi|351699147|gb|EHB02066.1| Flap endonuclease 1 [Heterocephalus glaber]
Length = 380
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/361 (56%), Positives = 274/361 (75%), Gaps = 3/361 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G E L +E GE
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGETLQSEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMEHGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL +RK+P+ EF +++IL+ LNLT +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEARKLPIQEFHLSRILQALNLTQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ FL E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFLCGEKQFSEERIRGGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 P 361
P
Sbjct: 358 P 358
>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
gi|82071385|sp|P70040.1|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A;
Short=xFEN-1a
gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
Length = 382
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/362 (54%), Positives = 269/362 (74%), Gaps = 3/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KE +SYFGRK+A+DASM IYQFLI V + G L NE GE
Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDGN-TLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L A EAG
Sbjct: 60 TTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 VENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL ++K+P+ EF + ++++++ +T +QF+DLCIL G DYC++IR
Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D + ++KW
Sbjct: 240 GIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DTDITELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ F+ E F+ DR+ +K+ + S+QGRL+ FFK V + + KRKE
Sbjct: 299 IEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK-VTGSVSSTKRKE 357
Query: 361 PE 362
E
Sbjct: 358 AE 359
>gi|355688549|gb|AER98539.1| flap structure-specific endonuclease 1 [Mustela putorius furo]
Length = 379
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 279/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L+ +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLSQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPRRAVGLIQKHKSIEEIVRQLDPSKYPVPENWLHKEAQQLFLEPEVL-DPESVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>gi|17510005|ref|NP_491168.1| Protein CRN-1 [Caenorhabditis elegans]
gi|75023012|sp|Q9N3T2.1|FEN1_CAEEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
gi|31747251|gb|AAP57297.1| cell death-related nuclease 1 [Caenorhabditis elegans]
gi|373220153|emb|CCD72553.1| Protein CRN-1 [Caenorhabditis elegans]
Length = 382
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/346 (54%), Positives = 260/346 (75%), Gaps = 2/346 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++++ADNAP ++K + +++FGR +AIDASM +YQFLI V + G++ L +E GE
Sbjct: 1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAIDASMCLYQFLIAVRQDGSQ-LQSEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GM RT+R+ E G+KP+YVFDG+PPD+K EL KR +RA+A L EA E G+
Sbjct: 60 TTSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ EKF +R VKVTKQ ND+ KRLL LMG+PVVEAP EAEAQCA L K+G+V+ +ED
Sbjct: 120 VKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRH + P ++KIP+ EF ++ LEE+ L++++FIDLCIL GCDYC +IR
Sbjct: 180 MDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYCGTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LIRQH +IETILENI++ +Y PEDWPY+ AR LF PE VT E++++ W
Sbjct: 240 GVGPKKAVELIRQHKNIETILENIDQNKYPPPEDWPYKRARELFLNPE-VTKPEEVELTW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
D EG+I FL E FN +R+ A+ K+K ++ +QGR++SFF
Sbjct: 299 KEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFF 344
>gi|379991146|ref|NP_001244014.1| flap endonuclease 1 [Equus caballus]
Length = 380
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 279/368 (75%), Gaps = 5/368 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 MGIQGLAKLIADVAPGAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG
Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQLQQAQAAGA 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+ED
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KW
Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPETVELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V + + KRKE
Sbjct: 299 SEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRKE 357
Query: 361 PENTPKAT 368
PE PK +
Sbjct: 358 PE--PKGS 363
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP ++KEQ+ + YFGRK+AIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGILGLSKLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSEGAQ-LTSVNGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PP+LK ELAKR +R + L A EAGN
Sbjct: 60 TTSHLMGTFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDETQKLLRAAEEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKF++R VKVTK+H + K+LL+LMG+P ++AP EAEAQCAAL K+G+V+A A+ED
Sbjct: 120 AEDIEKFNRRLVKVTKEHAKEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV EF K+L++L L D+FIDLCI+ GCDY SI+
Sbjct: 180 MDALTFGCNVLLRRLTFSEARKMPVQEFHFDKVLKDLGLNHDEFIDLCIMLGCDYTSSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H S+E I+EN++ +++ IPEDW Y+EAR LF+EPE VTD E + +KW
Sbjct: 240 GVGPKRAIELIKTHRSLEKIVENLDTKKFPIPEDWNYKEARLLFQEPE-VTDPETIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
+ P+EEGL+ +L + FN +RV +K+ A+N S+QGRL++FFK + N + P KRK
Sbjct: 299 TEPNEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPN-PQKRK 356
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 273/377 (72%), Gaps = 4/377 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP+++KE++ + YFGRKIAIDASM +YQFLI V G + LT GE
Sbjct: 1 MGILGLSKLIADIAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQ-LTTVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PP+LK ELAKR +R +A L A E GN
Sbjct: 60 TTSHLMGTFHRTIRLVEQGIKPVYVFDGKPPNLKSGELAKRAERRDEAQKLLQAAEEDGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E I+KFS+R VKVTK H D+ K+LL+LMG+P ++AP EAEAQCAAL K+G+V+A A+ED
Sbjct: 120 VEAIDKFSRRLVKVTKNHADEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV E + K+L L L D+FIDLCI+ GCDY SI+
Sbjct: 180 MDALTFGCDILLRRLTLSEARKLPVQEIHMDKVLTGLELNHDEFIDLCIMLGCDYTGSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ + S++ I+ENI+ ++Y IPE+W Y+EAR LF+EPE V + E +Q+KW
Sbjct: 240 GVGPKRAIELIKNYRSLDKIIENIDTKKYPIPENWNYKEARLLFQEPE-VANAEDIQLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGL+ FL S+ FN +RV +K+ A+N S+QGRL+SFFK + S+P +++
Sbjct: 299 SEPDEEGLVKFLCSDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKVLPTKSSPTPKRK 358
Query: 361 PENTPKATTNKKSKAGG 377
E K KK+K G
Sbjct: 359 IEE--KKLPAKKAKTVG 373
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/358 (55%), Positives = 255/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ + AP S+KE + ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKQLFSIIKEEAPDSIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSEGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLNMERKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E I ++ +Y IPEDWPY++AR LF EP+V D
Sbjct: 240 KVGPSTALKLIREHGSLEKVVEAIEKDPKKKYTIPEDWPYKDARDLFFEPDVRQADHHDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKPV T A
Sbjct: 300 DFKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPVPKTDA 357
>gi|440633913|gb|ELR03832.1| flap endonuclease-1 [Geomyces destructans 20631-21]
Length = 395
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/361 (54%), Positives = 259/361 (71%), Gaps = 5/361 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ D AP+++KE + ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKQLFSIIRDEAPQAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSEGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++A+AT+ L EA E G
Sbjct: 60 TTSHLLGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFARKAEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+V++QHN +C++LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVSRQHNAECQQLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P +RHL +RK P+ E V K+LE L + QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILIRHLTFSEARKEPIQEIHVDKVLEGLGMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
IG TALK+IR+HGS+E ++E IN + +Y IPEDWPY +AR LF P+V D +
Sbjct: 240 KIGPNTALKMIREHGSLEKVVEWINNDGKNKYTIPEDWPYADARELFFNPDVRPADHAEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
KW PD EGLI FLV EN F+ +RV I K++ S Q RLE FFKP+ T A I
Sbjct: 300 DFKWEQPDVEGLIKFLVVENAFSEERVRGGIAKLQKNLKSSQQARLEGFFKPIPKTEAEI 359
Query: 357 K 357
K
Sbjct: 360 K 360
>gi|213404252|ref|XP_002172898.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
gi|317376192|sp|B6JYI7.1|FEN1_SCHJY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212000945|gb|EEB06605.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
Length = 377
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 262/352 (74%), Gaps = 1/352 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++++ADN P +++ ++YFGRK+AIDASMS+YQFLI V + L N+ GE
Sbjct: 1 MGIKGLSQVIADNCPSAVRHNDIKNYFGRKVAIDASMSLYQFLIQVRGQDGQQLMNDQGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK ELAKR S++ A ++ EA E G
Sbjct: 61 TTSHLMGMFYRTLRMVDNGLKPCYVFDGKPPTLKSGELAKRASRQQKAREEREEAKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E ++KF+KRTV+VT+QHND+ K+LL+LMG+P V AP EAEAQCAAL ++G+VYA ASED
Sbjct: 121 AEMVDKFAKRTVRVTRQHNDEAKKLLELMGIPYVNAPCEAEAQCAALARAGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD++ F AP LRHL RK P+ E+ K +E LN T++QF+DLCIL GCDYCD IR
Sbjct: 181 MDTMCFQAPILLRHLTFSEQRKEPISEYSFEKTIEGLNFTIEQFVDLCILLGCDYCDPIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G A++LIRQHG+++ +++ +++++ IPEDWPYQ+ARRLF E E V + + +++KW
Sbjct: 241 GVGPARAVELIRQHGNLDNFVKDADKKKFPIPEDWPYQDARRLFLEAE-VQEAKDIELKW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
APDE+G+I FLV E GFN DRV I ++ A QGRL+SFFK + +T
Sbjct: 300 RAPDEQGIIKFLVEEKGFNEDRVRVGINRLVKASKTIPQGRLDSFFKVLPST 351
>gi|340966641|gb|EGS22148.1| hypothetical protein CTHT_0016650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 395
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/358 (54%), Positives = 256/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ + AP S++E + + +FGRK+AIDASMSIY FLI V R+ + L N+AGE
Sbjct: 1 MGIKHLFQLIKEEAPLSIREGEIKQHFGRKVAIDASMSIYSFLIAV-RSDGQQLMNDAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++AG+KP+YVFDG+PP LK ELAKR+ ++ +A +DL EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDAGIKPLYVFDGKPPKLKSGELAKRFQRKQEAQEDLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFNTPILLRHLTFAEQRKEPIQEIHTDKVLEGLNMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
IG TALKLIR+HGS+E ++E I ++RY IPEDWPYQ+AR LF P+V D+ +
Sbjct: 240 KIGPSTALKLIREHGSLEKVVEFIQNDPKKRYTIPEDWPYQDARELFFNPDVRQADDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
KW PD EGL+ FLV E GF+ DRV ++++ + Q R+E FFK + T A
Sbjct: 300 DFKWEKPDVEGLVQFLVKEKGFSEDRVRNGAQRLEKNLKGAQQARIEGFFKVIPKTEA 357
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/382 (52%), Positives = 266/382 (69%), Gaps = 5/382 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK LT L+ DNAP S+K ++YFGR IAIDAS S+YQFLI + + LTN+ GE
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNLLKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHLQGMF RTI+L+ G+KPIYVFDG+PP LK ELAKR +KR +ATD L EA E G
Sbjct: 61 TTSHLQGMFYRTIKLISKGIKPIYVFDGKPPTLKSGELAKRQAKRKEATDSLKEATEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++KF+KRT+ V+++ N++C +LL LMGVPVV+AP EAEAQCA + KSG+ +A SED
Sbjct: 121 SEDVQKFAKRTISVSRKQNEECIKLLTLMGVPVVKAPCEAEAQCAEIVKSGKAWATGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLT G+ LR L ++K+P++EFE+ +LE L LT ++FIDL IL GCDYCDSI+
Sbjct: 181 MDSLTLGSTVLLRRLFFSEAKKMPILEFELPSVLEGLGLTYEEFIDLGILLGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A +LI++H ++E I++++++ +Y IPE +PYQE R LFK P+V+ ++ +W
Sbjct: 241 GIGPKRAFELIQKHKTLEEIIKHLDKSKYPIPEFFPYQEVRELFKHPDVIPGDQLPAFQW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PD EGL FLV E GF+ RV + IEK+K KN S Q R++SF V P K+
Sbjct: 301 KDPDVEGLNEFLVKEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITIVKK---PTDDKK 357
Query: 361 PENTPKATTNKKSKAGGGGGRK 382
P + K T SK G +K
Sbjct: 358 PNS--KKVTKTPSKPGAKSNKK 377
>gi|402080846|gb|EJT75991.1| DNA-repair protein rad2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 394
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/375 (52%), Positives = 265/375 (70%), Gaps = 4/375 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ +NAP ++K + +++FGRK+AIDASMSIY FLI V R+ E+LTNE G+
Sbjct: 1 MGIKQLFSIIKENAPDAVKSGEIKNHFGRKVAIDASMSIYSFLIAV-RSNGEVLTNEDGQ 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL ++G+V+A ASED
Sbjct: 120 AEEVEKFSRRTVHVTREHNEECRRLLKLMGIPYIVAPTEAEAQCAALARAGKVFAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P++E V K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPVLLRHLTFSEQRKEPILEIHVDKVLEGLNMERKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQ 297
+G TALKLIR+HGS+ETI+E + + +Y +P+DWP+++AR LF P+V D
Sbjct: 240 KVGPTTALKLIREHGSLETIVEKMKKGDLKYTVPDDWPFEDARDLFFNPDVRPADHPDCD 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
KW PD +GLINFLV+E GF+ DRV +++ S Q RLE FFKPVA T K
Sbjct: 300 FKWEKPDIDGLINFLVTEKGFSEDRVRSGAARLEKNLKTSQQQRLEGFFKPVARTEEQQK 359
Query: 358 RKEPENTPKATTNKK 372
+ + KA KK
Sbjct: 360 EHKRKLEVKAEETKK 374
>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
gi|408391605|gb|EKJ70977.1| hypothetical protein FPSE_08836 [Fusarium pseudograminearum CS3096]
Length = 395
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/356 (54%), Positives = 255/356 (71%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + LTNE+GE
Sbjct: 1 MGIKQLFQIIKEEAPDAIKESEIKNQFGRKVAIDASMSIYSFLIAV-RSEGQQLTNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN DC+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNADCQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLEGLNMERKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALK+IR HGS+E + +EN ++++Y IPEDWPY++AR LF EP+V D
Sbjct: 240 KVGPSTALKMIRDHGSLEKVVEAMENDSKKKYVIPEDWPYKDARDLFFEPDVRQADHPDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKP+ T
Sbjct: 300 DFKWEKPDMEGLVKFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPIPKT 355
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/362 (54%), Positives = 265/362 (73%), Gaps = 2/362 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP+++KE++ + YFGRKIAIDASM +YQFLI V G + LT GE
Sbjct: 1 MGILGLSKLIADVAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQ-LTTVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP+YVFDG+PP+LK EL KR +R +A L A E GN
Sbjct: 60 TTSHLMGTFYRTIRMVEQGIKPVYVFDGKPPNLKSGELTKRAERRDEAQKLLQAAEEDGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E I+KF++R VKVTK H D+ K LL+LMG+P V+AP EAEAQCAAL K+G+V+A A+ED
Sbjct: 120 VEAIDKFNRRLVKVTKTHADEAKELLQLMGIPYVDAPCEAEAQCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV E K+L L L ++FIDLCI+ GCDY +SI+
Sbjct: 180 MDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLAGLELNHNEFIDLCIMLGCDYTNSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H S+E I+ENI+ ++Y IPEDW Y++AR LF+EPE V++ + +Q+KW
Sbjct: 240 GVGPKRAIELIKNHRSLEKIIENIDVKKYPIPEDWNYKDARLLFQEPE-VSNPDDVQLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGL+ FL + FN +RV +K+ A+N S+QGRL+SFFK + N++ KRK
Sbjct: 299 SEPDEEGLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKVLPNSTPTPKRKA 358
Query: 361 PE 362
E
Sbjct: 359 EE 360
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/389 (52%), Positives = 276/389 (70%), Gaps = 8/389 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + +++FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDGQPPDLK ELAKR +R +A L A EAG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGQPPDLKSGELAKRAERREEAEKALKAATEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +I+KF++R V+VTK+H+ + K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 EAEIDKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+L+ L LT +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ + IETILENI+ +Y +PE+W Y+ AR LF EP+V D + +KW
Sbjct: 240 GVGPKRAIELIKSYRDIETILENIDTSKYPVPENWNYKRARELFIEPDVA-DASAIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF-----KPVANTSAP 355
+ PDE+GL+ FL + FN +RV +K+ +K +Q RL+SFF P A+TSA
Sbjct: 299 TEPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFFTTLPSTPNASTSAA 358
Query: 356 IKRKEPENTPKATTNKKSKAGGGGGRKRK 384
KRK E A K + G GR+ K
Sbjct: 359 -KRKAEEAKKSANNKKAKTSSAGRGRRPK 386
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 266/360 (73%), Gaps = 3/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP+++KE + + FGRKIAIDASM +YQFLI V G + LT+ GE
Sbjct: 1 MGILGLSKLIADVAPEAIKECELKHLFGRKIAIDASMCLYQFLIAVRSEGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PP LK ELAKR +R +A L A EAGN
Sbjct: 60 TTSHLMGTFYRTIRLVENGIKPVYVFDGKPPTLKGGELAKRAERREEAQKQLQAAEEAGN 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++KF++R VKVTKQH ++ K+LL LMG+P ++AP EAEAQCAA+ KSG+VYA A+ED
Sbjct: 120 VEDVDKFNRRLVKVTKQHGEEAKQLLTLMGIPFIDAPCEAEAQCAAMVKSGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+P+ E + K+L L LT D+FIDLCI+ GCDY SI+
Sbjct: 180 MDALTFGCNVLLRRLTFSEARKMPIQEIQYDKVLNGLGLTRDEFIDLCIMLGCDYTTSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H S+E ILEN++ +++ +PEDW Y++AR+LF EPE V D E++ +KW
Sbjct: 240 GVGPKRAIELIKNHKSLEKILENLDTKKFPVPEDWNYKDARQLFIEPE-VKDPEEVDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA-PIKRK 359
+ PDEEGL+ FL + FN DRV +K+ A++ +QGR++SFFK + +T+ P KRK
Sbjct: 299 NDPDEEGLVKFLCGDKQFNEDRVRNGAKKLLKARHTGTQGRIDSFFKVLPSTNGTPAKRK 358
>gi|317374921|sp|B6QT52.2|FEN1_PENMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 265/369 (71%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + L +EAGE
Sbjct: 1 MGIKHLYQVISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLMSEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP +K ELAKR +++ +A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P++E + K LE L + M QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E I +++Y IP+DWPYQEAR LF P+V D+ Q
Sbjct: 240 KVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPDDWPYQEARELFFNPDVRKADDPQC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW +PD EGL+ FLV++ GF+ DRV ++ + Q RLE FFKPVA T
Sbjct: 300 DFKWESPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFFKPVAKTDAEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ASMKRKHDE 368
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 265/369 (71%), Gaps = 19/369 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LLA++APK+ +E + ++ FGRK+A+DASMSIYQFLI V + E+LTN+AGE
Sbjct: 1 MGIKGLTALLAEHAPKAFQEHEMKTLFGRKVAVDASMSIYQFLIAVRQKDGELLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ KR +A +D EA E G
Sbjct: 61 TTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDNEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDMDRFSRRTVKVTREHNEECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAP RHL +RK P+ E + K LE L + M QF +LCIL GCDY + I+
Sbjct: 181 MDTLTFGAPILYRHLTFSEARKTPISEINLQKALEGLEMNMSQFTELCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI----------------NRERYQIPEDWPYQEARRLF 284
G+G ++ALKLIR+HGS+ ILE++ + QIPE+WP+++A+ +F
Sbjct: 241 GVGPKSALKLIREHGSLGKILEHLKEKAAEKEEAAEEGKKKKGGVQIPEEWPWEQAKAIF 300
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
+P+ VT ++L+++W +P+ +GL++FLV E GFN +RV K EK+ N QGRL+
Sbjct: 301 LKPD-VTPADELELEWKSPNVDGLVDFLVREKGFNEERVRKGAEKLAKFLNAKQQGRLDG 359
Query: 345 FF--KPVAN 351
FF KP A+
Sbjct: 360 FFTAKPKAS 368
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/358 (53%), Positives = 260/358 (72%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP+++KE + +++FGRK+AIDASMSIY FLI V R+ + L N++GE
Sbjct: 1 MGIKQLFQIIKEEAPEAIKEGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLMNDSGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPFIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + K+LE LN+ QF+DLCIL GCDY D +
Sbjct: 180 MDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERSQFVDLCILLGCDYLDPVP 239
Query: 241 GIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HG++E +++ I ++++Y +PEDWPY++AR LF EP+V D+
Sbjct: 240 KVGPTTALKLIREHGTLENVVDAIEKDSKKKYTLPEDWPYKDARDLFFEPDVRKADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
KW PD EGL+ FLV+E GF+ DRV A +++ S Q RLE FFKP+ T A
Sbjct: 300 DFKWDKPDVEGLVTFLVTEKGFSEDRVRGAAARLEKNLKTSQQARLEGFFKPIPKTDA 357
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/383 (51%), Positives = 274/383 (71%), Gaps = 4/383 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KLLAD AP +++E + + YFGRK+AIDASM +YQFLI V R + LT+ GE
Sbjct: 1 MGILGLSKLLADVAPHAIREGEIKHYFGRKVAIDASMCLYQFLIAV-RNESGQLTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PP+LK EL+KR +R +A L +A E G+
Sbjct: 60 TTSHLLGTFYRTIRLIENGIKPVYVFDGKPPELKSAELSKRQERRDEAQKALDKATELGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+++KF++R VKVT+ H D+ K+LL LMGVP +EAP EAEAQCAA+ K G VYA A+ED
Sbjct: 120 ATEVDKFNRRLVKVTRHHADEAKQLLTLMGVPYIEAPCEAEAQCAAMVKGGLVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ LRHL +RK+PV E ++K+LE L L F+DLCIL GCDY +SIR
Sbjct: 180 MDALTFGSNVLLRHLTFSEARKMPVQEIHLSKVLEGLELDQKAFVDLCILLGCDYTESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI++H SIE IL+NI+ ++Y PE+W Y+ AR+LF+EPEV+ D ++++KW
Sbjct: 240 GIGPKRAIELIKKHKSIEEILKNIDVKKYPPPENWNYEGARQLFEEPEVM-DAAKIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEG++ FL + FN +RV ++K+ +++ S+QGRL+ FF ++ T P KRK
Sbjct: 299 TDPDEEGMVKFLCGDKQFNEERVRNGVKKLLKSRSTSTQGRLDGFFTVLSTT--PAKRKA 356
Query: 361 PENTPKATTNKKSKAGGGGGRKR 383
KK+ AG G GR +
Sbjct: 357 ENKKETPNKKKKTGAGAGRGRAK 379
>gi|358385848|gb|EHK23444.1| hypothetical protein TRIVIDRAFT_37094 [Trichoderma virens Gv29-8]
Length = 395
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/358 (53%), Positives = 256/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L N++GE
Sbjct: 1 MGIKQLFQIVKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNDSGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + K+LE LN+ DQF+DLCIL GCDY D +
Sbjct: 180 MDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLEGLNMERDQFVDLCILLGCDYLDPVP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E I ++ +Y +PEDWPY++AR LF P+V D+
Sbjct: 240 KVGPTTALKLIREHGSLEKVVEAIEKDPKKKYTLPEDWPYKDARELFFNPDVRQADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKPV T A
Sbjct: 300 DFKWDKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPVPKTDA 357
>gi|389637772|ref|XP_003716519.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
gi|317374924|sp|A4QS18.2|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|351642338|gb|EHA50200.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
Length = 394
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/356 (53%), Positives = 257/356 (72%), Gaps = 4/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ +NAP ++K + ++ FGRK+AIDASMSIY FLI V R+ EMLTNE G+
Sbjct: 1 MGIKQLFTIIKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAV-RSNGEMLTNEDGQ 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C++LLKLMG+P + AP+EAEAQCA L ++G+V+A ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL +RK P+ E V K+LE L++ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQ 297
+G TALKLIR+HGS+ETI+E + + +Y +PEDWP+++AR LF P V D
Sbjct: 240 KVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAVHPADHPDCN 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 353
KW PD EGL+ +LV+E GF+ DRV +++ A S Q RLE FFKPVA T+
Sbjct: 300 FKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPVARTA 355
>gi|358394482|gb|EHK43875.1| hypothetical protein TRIATDRAFT_300264 [Trichoderma atroviride IMI
206040]
Length = 395
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/358 (53%), Positives = 257/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKQLFQIVKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + ++LE LN+ QF+DLCIL GCDY D +
Sbjct: 180 MDTLCFNTPILLRHLTFSEQRKEPIQEIHLDRVLEGLNMERKQFVDLCILLGCDYLDPVP 239
Query: 241 GIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E I ++++Y +PEDWPY++AR LF P+V D+
Sbjct: 240 KVGPTTALKLIREHGSLEKVVEAIEKDSKKKYTLPEDWPYKDARELFFNPDVRQADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
KW PD EGL+ FLV+E GF+ DRV A +++ S Q RLE FFKPV T A
Sbjct: 300 DFKWEKPDMEGLVTFLVTEKGFSEDRVRSAGARLEKNLKSSQQARLEGFFKPVPKTDA 357
>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
Length = 380
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/375 (53%), Positives = 272/375 (72%), Gaps = 6/375 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP+++KE++ + YFGRKIAIDASM +YQFLI V G + LT GE
Sbjct: 1 MGILGLSKLIADIAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQ-LTTVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIRL+E G+KP+YVFDG+PP+LK ELAKR +R +A L A E G+
Sbjct: 60 TTSHLMGIFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDEAQKLLQAAEEDGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E I+KF++R VKVTK H ++ K+LLKLMG+P ++AP EAEAQCAAL K+G+V+A A+ED
Sbjct: 120 AEAIDKFNRRLVKVTKTHAEEAKQLLKLMGIPYIDAPCEAEAQCAALVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LR L +RK+PV E K+L L L ++FIDLCI+ GCDY SI+
Sbjct: 180 MDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLGCDYTGSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ H S+E I+ENI+ +++ +PEDW Y+EAR LF+EPE V++ + + +KW
Sbjct: 240 GVGPKRAIELIKNHKSLEKIIENIDTKKFPVPEDWNYKEARLLFQEPE-VSNADDIVLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEE L+ FL + FN +RV +K+ A+N S+QGRL+SFFK + N + P KRK
Sbjct: 299 SEPDEEDLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKILPNPT-PTKRKT 357
Query: 361 PENTPKATTNKKSKA 375
E K T+ KK KA
Sbjct: 358 EE---KKTSAKKVKA 369
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/358 (53%), Positives = 257/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L N++GE
Sbjct: 1 MGIKQLFQIIKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNDSGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + K+LE L + QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFNSPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR HGS+E I+E + ++ +Y +PEDWPY++AR LF EP+V D+ +
Sbjct: 240 KVGPTTALKLIRDHGSLEKIVEAMEKDPKKKYVLPEDWPYKDARDLFFEPDVRKADDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKPV T A
Sbjct: 300 DVKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPVPKTDA 357
>gi|317376190|sp|D3BN56.1|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
Length = 388
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/378 (51%), Positives = 262/378 (69%), Gaps = 7/378 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK LT L+ +NAP ++K +SY GR +AIDAS S+YQFLI + L N GE
Sbjct: 1 MGIKNLTSLIEENAPSAIKSNDLKSYSGRIVAIDASTSMYQFLIAINTEMGAALMNANGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHLQGMF RTI+L+ G+KPIYVFDG+ P LK ELAKRY++R +A L EA E GN
Sbjct: 61 TTSHLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKRYARRKEAEQQLEEANEVGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++KF KRT+ +++ N++CK+LL+LMGVP+V+AP EAEAQCA LCK G+ +A SED
Sbjct: 121 SEDVQKFQKRTISASRKQNEECKKLLELMGVPIVQAPCEAEAQCAELCKGGKAWATGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLT G LR L +RK+P+ME E+ K+L+ L+LT DQF+DLCIL GCDYCD+I+
Sbjct: 181 MDSLTLGTTILLRRLTFSEARKLPIMEIELEKVLDGLDLTHDQFVDLCILLGCDYCDTIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + + +I +H +I+T+++NI+R + IPE +PY+E R LFK P+V+ ++ +I W
Sbjct: 241 GIGPKKSFDMITKHKNIQTVIQNIDRTKNPIPESFPYEEVRELFKNPDVIKCQDLPEIVW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PD +GLI +LV E GFN RV + IEK+K K+ Q R+++FF P+ IKR
Sbjct: 301 KEPDVDGLIKYLVGEMGFNETRVQQGIEKLKKYKDTGVQTRIDTFF-PM------IKRPR 353
Query: 361 PENTPKATTNKKSKAGGG 378
E+ A +K+ A G
Sbjct: 354 DEDAGSAKKKQKTVAKPG 371
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/387 (51%), Positives = 269/387 (69%), Gaps = 5/387 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D + + +KW
Sbjct: 240 GIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPE-VADADSIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAPIK 357
PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK + N + K
Sbjct: 299 VEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPSTPNATNAAK 358
Query: 358 RKEPENTPKATTNKKSKAGGGGGRKRK 384
RK E A K +GGG GR+ K
Sbjct: 359 RKAEEAKKSANNKKAKTSGGGRGRRPK 385
>gi|345569735|gb|EGX52564.1| hypothetical protein AOL_s00007g552 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/365 (52%), Positives = 264/365 (72%), Gaps = 5/365 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++ AP ++K + +++FGRK+AIDASMSIY FLI V R+ ++LT+E GE
Sbjct: 1 MGIKQLYQVISEAAPDAIKNGEIKNHFGRKVAIDASMSIYSFLIAV-RSEGQVLTSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG+PP LK ELAKR +++ +A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGKPPTLKSGELAKRTARKFEAQEAHEEAKEVGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKFS+RTV+ T++HN++CKRLLKLMG+P ++AP EAEAQCA L KSG+VYA ASED
Sbjct: 120 AEEIEKFSRRTVRATREHNEECKRLLKLMGIPYLDAPCEAEAQCAILAKSGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + +++ L++T +QFIDLCIL GCDYCD+I
Sbjct: 180 MDTLCFETPILLRHLTFSEQRKQPIQEIHLDRVMAGLDMTREQFIDLCILLGCDYCDTIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
+G TALKLIRQ+ SIE ++EN+++++Y++P+ +PYQ+AR L PEVV +E KW
Sbjct: 240 KVGPTTALKLIRQYKSIEGVIENLDKDKYKVPDYFPYQDARELLMNPEVVPADE-CDFKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---APIK 357
APD EGL++FLV GFN DRV ++ + + Q RLE FFK + T A +K
Sbjct: 299 DAPDTEGLVDFLVGGKGFNEDRVRSGAARLSKNQTTAQQSRLEGFFKVIPKTEEELANLK 358
Query: 358 RKEPE 362
RK E
Sbjct: 359 RKNEE 363
>gi|390603405|gb|EIN12797.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 384
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/382 (52%), Positives = 274/382 (71%), Gaps = 9/382 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+ ++APK++ E ++ FGRK+AIDASMSIYQFLI V + EMLTN++GE
Sbjct: 1 MGIKGLTALINEHAPKAITEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDSGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP Y+FDG+PP+LK LAKR+ KR +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYIFDGKPPELKSGVLAKRFEKREEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTVKVT++HN++C++LL+LMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDMDRFSRRTVKVTREHNEECRKLLRLMGIPVVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP LRHL ++K P+ E +AK LE L + M QFIDLCIL GCDY + I+
Sbjct: 181 MDTLTFNAPILLRHLTFSEAKKTPISEINLAKALEGLQMDMSQFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRER------YQIPEDWPYQEARRLFKEPEVVTDEE 294
G+G +TALKLIR+HG + ++E++ RE+ QIPE WP++EA++LF++P+V +E
Sbjct: 241 GVGPKTALKLIREHGGLAGVMEHL-REKGKGKGGVQIPEYWPWEEAKKLFEKPDVEPADE 299
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+Q++W PD EGL+ FLV E GFN +RV K EK+ N QGRL+ FF V +
Sbjct: 300 -VQLEWKNPDVEGLVQFLVVEKGFNEERVRKGAEKLTKFLNAKQQGRLDGFFT-VQPKKS 357
Query: 355 PIKRKEPENTPKATTNKKSKAG 376
P K + +A T +K + G
Sbjct: 358 PQKAPPKGKSKEAGTKRKVRLG 379
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/365 (53%), Positives = 263/365 (72%), Gaps = 5/365 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP +++E + +++FGRK+AIDASM +YQFLI V G + L G+
Sbjct: 1 MGILGLSKLIADLAPLAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQ-LAAVNGD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG PPD+K ELAKR +R +A L A EAG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGAPPDMKSGELAKRAERRDEAEKALKAATEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ IEKF++R V+VTK+H+ + K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 EAQIEKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+L+ L LT +FIDLCIL GCDYC+SIR
Sbjct: 180 MDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A++LI+ + IETILENI+ +Y +PE+W Y+ AR LF EP+ VTD + +KW
Sbjct: 240 GVGPKRAIELIKSYRDIETILENIDTNKYAVPENWNYKRARELFIEPD-VTDASTIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAPIK 357
+ PDE+GL+ FL + FN +RV +K+ +K +Q RL+SFFK + N A K
Sbjct: 299 TDPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFFKTLPSSPNAIAAAK 358
Query: 358 RKEPE 362
RK E
Sbjct: 359 RKAEE 363
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/369 (52%), Positives = 262/369 (71%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++A+NAP ++K +++FGRK+AIDASMSIY FLI V G +++++ GE
Sbjct: 1 MGIKHLYQVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSD-TGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + + LE L + +QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR HG++E ++E+I +++Y IPE WPYQ+AR LF P+V ++ +
Sbjct: 240 KVGPNTALKLIRDHGTLEKVVESIEKDPKQKYVIPESWPYQDARELFLNPDVRDANDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL++FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVAKTDAEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ATLKRKHDE 368
>gi|378733116|gb|EHY59575.1| flap endonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 395
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 256/356 (71%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++A+ AP ++K + +++FGRK+AIDASMSIY FLI V G +++++ GE
Sbjct: 1 MGIKQLYHVIAEEAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSD-TGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++ +A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKNEANEQAEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNEECRRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + K LE L + QFIDLCIL GCDY D I
Sbjct: 180 MDTLCFNAPILLRHLTFSEQRKEPIQEIHLDKTLEGLGMDRTQFIDLCILLGCDYVDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEVVT-DEEQL 296
+G TALKLIR+HG++E + +EN ++RY +PEDWPY++AR LF P+V + D+ +
Sbjct: 240 KVGPNTALKLIREHGTLEKVVEFIENDPKKRYSLPEDWPYKDARELFLHPDVRSADDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW APD EGL+ FLV+E GFN DRV A +K++ + Q RLE FFK V T
Sbjct: 300 DFKWEAPDVEGLVQFLVNEKGFNEDRVRNAAQKLQKNVKTAQQSRLEGFFKAVPKT 355
>gi|317374923|sp|A7UW97.2|FEN1_NEUCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 394
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/356 (54%), Positives = 253/356 (71%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ D AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L NEAGE
Sbjct: 1 MGIKQLFSVIKDEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GCDY D I
Sbjct: 180 MDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V D+
Sbjct: 240 KVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARTLFFEPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK + T
Sbjct: 300 DFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKT 355
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/375 (52%), Positives = 266/375 (70%), Gaps = 14/375 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + +++FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A EAG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+IEKF++R V+VTK+H + K LLKLMGVP VEAP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+L+ L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V + + +++KW
Sbjct: 240 GIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKIARELFIEPE-VANADAIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ FL + FN DRV +K+ +K +Q RL+SFFK +
Sbjct: 299 TEPDEEGLVKFLCGDRQFNEDRVRSGAKKLLKSKQSQTQVRLDSFFKTLP---------- 348
Query: 361 PENTPKATTNKKSKA 375
+TP AT K KA
Sbjct: 349 --STPSATNAAKRKA 361
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/387 (51%), Positives = 269/387 (69%), Gaps = 5/387 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V + + + +KW
Sbjct: 240 GIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPE-VANADSIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAPIK 357
PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK + N + K
Sbjct: 299 VEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPSTPNATNAAK 358
Query: 358 RKEPENTPKATTNKKSKAGGGGGRKRK 384
RK E A K +GGG GR+ K
Sbjct: 359 RKADEAKKSANNKKAKTSGGGRGRRPK 385
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/387 (51%), Positives = 269/387 (69%), Gaps = 5/387 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V + + + +KW
Sbjct: 240 GIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPE-VANADSIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAPIK 357
PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK + N + K
Sbjct: 299 VEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPSTPNATNAAK 358
Query: 358 RKEPENTPKATTNKKSKAGGGGGRKRK 384
RK E A K +GGG GR+ K
Sbjct: 359 RKAEEAKKSANNKKAKTSGGGRGRRPK 385
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/366 (52%), Positives = 260/366 (71%), Gaps = 8/366 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKHLYQIISENAPDAIKVGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A + EA E G
Sbjct: 60 TTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + ++LE L + QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLGCDYVDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALK+IR HGS+E + +EN +++Y IPEDWPY++AR LF EP+V D +
Sbjct: 240 KVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQARDLFFEPDVRPADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW +PD EGL+ FLV GF+ DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPVAKTEEEK 359
Query: 354 APIKRK 359
A +KRK
Sbjct: 360 ASLKRK 365
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/363 (54%), Positives = 268/363 (73%), Gaps = 4/363 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP ++KE + ++YFGRKIAIDASMS+YQFLI V G ++++ + GE
Sbjct: 1 MGILGLSKLIADIAPYAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVD-GE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PPD+K +L KR +R +A +L +A EAG+
Sbjct: 60 TTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQLNKRAERREEAEKELQKATEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++KF++R VKVTKQ +++ K+LLKLMGVPVV+AP EAEAQCAAL KSG+V+A A+ED
Sbjct: 120 TASVDKFNRRLVKVTKQRSEEAKQLLKLMGVPVVDAPCEAEAQCAALVKSGKVFAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAP LRHL +RK+PV EF + +L+ L L ++FIDLCIL GCDYC SIR
Sbjct: 180 MDALTFGAPVLLRHLTFSEARKMPVQEFHLNNVLQGLELKQNEFIDLCILLGCDYCGSIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A+ LIRQH +++ +L+NI+ E+YQ P DW Y+ AR LF EPE V D + +++KW
Sbjct: 240 GVGPKRAIDLIRQHRTLDEVLKNIDTEKYQPPTDWDYERARSLFMEPE-VADPKDIELKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ PDEEGL+ FL + FN +RV +K+ A+ ++Q RL+ FF T+ KRK
Sbjct: 299 TDPDEEGLVKFLCGDRQFNEERVRNGAKKLIKARTGTTQARLDGFF--TLTTTPNSKRKA 356
Query: 361 PEN 363
E+
Sbjct: 357 EED 359
>gi|340518918|gb|EGR49158.1| Rad27p/FEN-1 endonuclease-like protein [Trichoderma reesei QM6a]
Length = 395
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/358 (53%), Positives = 256/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L N++GE
Sbjct: 1 MGIKQLFQIVKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNDSGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + K+LE LN+ +QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLEGLNMEREQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HG++E ++E I ++ +Y +PEDWPY++AR LF P+V D+
Sbjct: 240 KVGPTTALKLIREHGTLEKVVEAIEKDPKKKYTLPEDWPYKDARELFFHPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
KW PD +GL+ FLV+E GF+ DRV +++ S Q RLE FFKPV T A
Sbjct: 300 DFKWDKPDIDGLVQFLVTEKGFSEDRVRSGGARLEKNLKNSQQARLEGFFKPVPKTEA 357
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/367 (53%), Positives = 261/367 (71%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + L ++AGE
Sbjct: 1 MGIKHLYQVISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLMSDAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + K LE L + QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E I +++Y IP+DWPY+EAR LF P+V D+ Q
Sbjct: 240 KVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPDDWPYKEARELFFNPDVRKADDPQC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW +PD EGLI FLV+E GF+ DRV ++ + Q RLE FFKPV T
Sbjct: 300 DFKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFFKPVTKTEAEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ASLKRKH 366
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/364 (52%), Positives = 261/364 (71%), Gaps = 6/364 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +N P ++K + ++ FGRK+AIDASMSIY FLI V R+ + L ++ GE
Sbjct: 1 MGIKHLYQVIDENCPGAVKTGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMSDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP++VFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLFVFDGAPPKLKSGELAKRFQRKSEAQEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK P+ E + K+LE L + +QFIDLCIL GCDY D I+
Sbjct: 180 MDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDKVLEGLEMEREQFIDLCILLGCDYLDPIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN-RERYQIPEDWPYQEARRLFKEPEV-VTDEEQLQI 298
G+G TALKL+R+H ++E +++ + +Y IPEDWPYQ+AR LF EP+V D + +
Sbjct: 240 GVGPSTALKLVREHKNLEGVVKFMQGNSKYTIPEDWPYQDARLLFLEPDVHPADHPECEF 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---AP 355
KW APD +GLI FLV E GFN DRV ++++ + Q RLE FFKPV T+ A
Sbjct: 300 KWDAPDVDGLIKFLVEEKGFNEDRVRSGAQRLQKNIKSAQQSRLEGFFKPVPKTAEEQAN 359
Query: 356 IKRK 359
+KRK
Sbjct: 360 LKRK 363
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/366 (52%), Positives = 261/366 (71%), Gaps = 8/366 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + +++FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKNLYQIIKEEAPNAIKEGEIKAHFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A ++L EA E G
Sbjct: 60 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEANENLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPFIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL RK P+ E + K+LE L + +QF+DLCIL GCDY D I
Sbjct: 180 MDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLEGLGMEREQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HG+++ ++E I + +YQIPEDWPYQ+AR LF +P+V D+
Sbjct: 240 KVGPSTALKLIREHGTLDKLVEAIKEDPKGKYQIPEDWPYQDARELFFKPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW PD +GL+ FLV+E GF+ DRV A +++ S Q RL+ FFK + T
Sbjct: 300 DFKWEKPDMDGLVQFLVTEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVIPKTEEQK 359
Query: 354 APIKRK 359
A KRK
Sbjct: 360 ADAKRK 365
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 259/367 (70%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKHLYQIISENAPDAVKSGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A + EA E G
Sbjct: 60 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++CK+LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 TEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P++E + ++LE L + F+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR HGS+E ++E N +++Y IP+DWPY++AR LF EP+V D +
Sbjct: 240 KVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIPDDWPYEQARDLFFEPDVRPADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV GF+ DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFFKPVAKTDEEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ASLKRKH 366
>gi|403162368|ref|XP_003322600.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172578|gb|EFP78181.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 387
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/351 (52%), Positives = 257/351 (73%), Gaps = 2/351 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+ D AP+++ + + ++ FGRK+AIDASMSIYQFLI V + + L NEAGE
Sbjct: 1 MGIKGLTALINDVAPQAITQSEIKTLFGRKVAIDASMSIYQFLIAVRQQDGQQLMNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR+++ G+KP YVFDG+PP +K L+KR+ +R +A ++ EA E G
Sbjct: 61 TTSHLMGLFYRTIRMVDNGIKPAYVFDGKPPAMKAGVLSKRFERRQEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDI+K S+RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA LC+ G VY SED
Sbjct: 121 TEDIDKLSRRTVKVTREHNEECRRLLTLMGIPWVVAPSEAEAQCAELCRGGLVYGAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL +RK+P++ + K+L L LTM+QFI+ C+L GCDY D ++
Sbjct: 181 MDTLTFGTPILLRHLTFSEARKMPILTVNLEKVLSGLELTMEQFIEFCVLCGCDYVDPLK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINR-ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
G+ +TA KL+ +HGS+E ++E++ + PEDWP++EAR LF++PE VT +L+++
Sbjct: 241 GVAAKTAHKLMMEHGSLEKVVEHLRESSKNPPPEDWPWEEARALFQKPE-VTPSSELKLE 299
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
W PD EGL++FLV E GF+ +RV K K+ A + QGRL+ FFKP+A
Sbjct: 300 WKKPDVEGLVDFLVKEKGFDEERVKKGAAKLTQAMTQKQQGRLDGFFKPIA 350
>gi|317374926|sp|Q0CBS0.2|FEN1_ASPTN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/369 (52%), Positives = 262/369 (71%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K +++FGRK+AIDASMSIY FLI V G +++++ GE
Sbjct: 1 MGIKQLYQVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSD-TGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E +++ LE L++ +FIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V ++ +
Sbjct: 240 KVGPNTALKLIRDHGSLEKVVEYIQNDPKKKYVIPEDWPYQDARELFLHPDVRDANDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPVA +
Sbjct: 300 DFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARSDEEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ATLKRKHDE 368
>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
98AG31]
Length = 385
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/367 (52%), Positives = 264/367 (71%), Gaps = 10/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+ D AP ++ + + ++ FGRK+AIDASMSIYQFLI V + + L NEAGE
Sbjct: 1 MGIKGLTALINDLAPDAITQSEIKTLFGRKVAIDASMSIYQFLIAVRQQDGQQLMNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR+ E G+KP YVFDG+PP LK LAKR+ KR +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRMAENGIKPAYVFDGKPPQLKSGVLAKRFEKRTEAAEEGEEAKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++K ++RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA LCK G VY SED
Sbjct: 121 TEDLDKLTRRTVKVTREHNEECRRLLTLMGIPWVIAPSEAEAQCAELCKGGLVYGAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P LRHL +RK+P+ ++K+L L+LTM++FID CIL GCDY D ++
Sbjct: 181 MDTLTFGTPLLLRHLTFSEARKVPINTVNLSKVLAGLDLTMERFIDFCILCGCDYVDPLK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
G+ +TALKLI++HGS+E +++++ + + PEDWP+ EA+ LF +P+V+ E+ ++++
Sbjct: 241 GVAAKTALKLIKEHGSLEAVVDHLQQTGKNPPPEDWPWAEAKELFVKPDVIKSED-IKLE 299
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
W+ PD +GL+ FLV E GF+ +RV K K+K A + QGRL+ FFK +AP K
Sbjct: 300 WNMPDVDGLVEFLVKEKGFDEERVRKGTNKLKLAMTQKQQGRLDGFFK-----AAP---K 351
Query: 360 EPENTPK 366
+PE T K
Sbjct: 352 KPEETSK 358
>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
Length = 380
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/365 (52%), Positives = 260/365 (71%), Gaps = 5/365 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L+K++ DNA ++KE + ++ FGRK+AIDASMSIYQFLI V G+ LTN GE
Sbjct: 1 MGIHDLSKVIGDNASHAVKETEMKNLFGRKVAIDASMSIYQFLIAVRSEGSN-LTNAEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++ G+KP+YVFDG+PP LK ELAKR +R +A L A E G
Sbjct: 60 TTSHLSGIFYRTIRMVNNGVKPVYVFDGKPPTLKSGELAKRTERRKEAQSKLEAATEEGV 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ D+EKF++R VKVT +HN C+ LL LMG+P + AP EAEAQCA L K+G+V+A A+ED
Sbjct: 120 QADMEKFTRRLVKVTPEHNRQCQELLDLMGIPYIVAPCEAEAQCAELVKAGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LRH+ +RK+P+ +FE+ K+LE L+L+ D+FIDLCIL GCDYCD I
Sbjct: 180 MDALTFGTSVLLRHMTFSEARKMPIQQFELKKVLEGLDLSQDEFIDLCILLGCDYCDKIG 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
GIG A LI++H SIE ILE I +E +Y +P+DW + EAR LFK PEV ++ + +
Sbjct: 240 GIGRVRAYSLIKEHHSIEAILEAIKKEKKKYTVPDDWKFAEARELFKNPEVAPAKD-IDL 298
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 358
KW+ PD + L++F+ +++GF R+ + EK+ A++ S+QGRL+SFFK V AP KR
Sbjct: 299 KWNIPDVDKLVDFMCNKHGFEEGRIRRGAEKLVKARSTSTQGRLDSFFK-VLPGGAPKKR 357
Query: 359 KEPEN 363
K EN
Sbjct: 358 KSSEN 362
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 260/367 (70%), Gaps = 6/367 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +N P ++KE + ++ FGRK+AIDASMS+Y FLI V R+G E L ++ GE
Sbjct: 1 MGIKSLYQVIRENCPDAVKEGEIKTQFGRKVAIDASMSLYSFLIAV-RSGGEQLMSDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQEQHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++E+FS+RTV+VTK+HN + +RLLKLMGVP + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVERFSRRTVRVTKEHNAEAQRLLKLMGVPYIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP LRHL RK P+ E + ++LE L+ ++QFID+CIL GCDY D ++
Sbjct: 180 MDTLTFNAPVLLRHLTFSEQRKEPIQEIHLDRVLEGLDFDLNQFIDMCILLGCDYLDPVK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQI 298
GIG + A LI++H ++E ++E+I + +Y +PEDWPYQEAR LF+EP+V D +
Sbjct: 240 GIGPKNAHALIKEHKTLEKVVEHIEKTGKYTLPEDWPYQEARLLFQEPDVRAADAPECDF 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---AP 355
KW APD EGL+ FLV E GF+ DRV A +++ Q RLE FFK T A
Sbjct: 300 KWEAPDVEGLVKFLVEEKGFSEDRVRSAATRLQKNLKSGQQSRLEGFFKVKEKTEDEKAS 359
Query: 356 IKRKEPE 362
+KRK E
Sbjct: 360 LKRKNEE 366
>gi|400598682|gb|EJP66391.1| DNA-repair protein rad2 [Beauveria bassiana ARSEF 2860]
Length = 394
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/358 (53%), Positives = 256/358 (71%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + +++FGRK+AIDASMSIY FLI V R+ + L N+ GE
Sbjct: 1 MGIKQLFQIIKEEAPDAIKEGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLMNDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQTAQEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L K+G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAKAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMKRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E + ++++Y IPEDWPY++AR LF EP+V D+
Sbjct: 240 KVGPTTALKLIREHGSLEKVVEAMESDSKKKYTIPEDWPYKDARDLFFEPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+KW PD +GL+ FLV+E GF+ DRV +++ S Q RLE FFK + T A
Sbjct: 300 DVKWDKPDMDGLVQFLVAEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKVMPKTEA 357
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 262/354 (74%), Gaps = 2/354 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL++L+ D A S+KE + ++YFGRK+AIDASM++YQFLI + TG + LT++ GE
Sbjct: 1 MGIKGLSQLILDEAKDSVKEDQLKNYFGRKVAIDASMAMYQFLIALKNTGMD-LTDKDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VT+HLQG+ RT ++LE G+KP YVFDG+PP LK EL KR ++ +A + A A E G+
Sbjct: 60 VTNHLQGLLARTTKMLEYGIKPCYVFDGKPPQLKSGELEKRKERQKEAMEQFALAQEEGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E + ++KRT ++TK+ ++D K+LL+LMGVPVVEAP EAEAQCA LCK G VYA A+ED
Sbjct: 120 EEKMVMWNKRTTRMTKEQSNDGKKLLRLMGVPVVEAPGEAEAQCAELCKGGLVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LT+ P RHL +RK P+ EF +++E L +T+DQFID+CIL GCDY DSI+
Sbjct: 180 MDALTYATPVLARHLTFSEARKQPIQEFTFKQVIEGLGVTVDQFIDICILCGCDYTDSIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ-IK 299
GIG + AL +I+++G+IE +L+NI + YQ P ++PY+E R +FK P+V E + +K
Sbjct: 240 GIGPKKALAMIKKYGNIENLLKNIEGKHYQAPSEFPYEEVRNIFKNPDVTPSSELVDTMK 299
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 353
W+ PDEEGLI FLV E F+ +RV I++IK+++ K +Q RL+ FF PVA++S
Sbjct: 300 WTEPDEEGLIEFLVKEKQFDEERVRGYIKRIKSSRGKPTQTRLDGFFTPVASSS 353
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/367 (52%), Positives = 263/367 (71%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + LT+E GE
Sbjct: 125 MGIKHLYQIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLTSETGE 183
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 184 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGT 243
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 244 AEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 303
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GCDY D I
Sbjct: 304 MDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIP 363
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVVT-DEEQL 296
+G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V D
Sbjct: 364 KVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVRNADHPDC 423
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT---S 353
KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+A T
Sbjct: 424 DFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 483
Query: 354 APIKRKE 360
A +KRK
Sbjct: 484 AVLKRKH 490
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/367 (52%), Positives = 263/367 (71%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + LT+E GE
Sbjct: 1 MGIKHLYQIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLTSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V D
Sbjct: 240 KVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVRKADHPDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+A T
Sbjct: 300 DFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 AVLKRKH 366
>gi|380479712|emb|CCF42855.1| XPG domain-containing protein [Colletotrichum higginsianum]
Length = 394
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/356 (53%), Positives = 255/356 (71%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE + +++FGRK+AIDASMSIY FLI V R+ + LTNE+GE
Sbjct: 1 MGIKHLFQIIKEEAPDAIKEGEIKAHFGRKVAIDASMSIYSFLIAV-RSDGQQLTNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN DC++LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNADCQKLLKLMGIPFIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL RK P+ E + K+LE L + QF+D CIL GCDY D I
Sbjct: 180 MDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLEGLGMERKQFVDFCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HG +ET++E N +++Y IPEDWPYQ+AR LF P+V D+
Sbjct: 240 KVGPSTALKLIREHGDLETLVEAFKNDPKQKYVIPEDWPYQDARELFLNPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGL+ +LV+E GF+ DRV A +++ S Q RL+ FFK + T
Sbjct: 300 DFKWEKPDMEGLVQYLVTEKGFSEDRVRGAGARLEKNLKSSQQVRLDGFFKVIPKT 355
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/367 (52%), Positives = 263/367 (71%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + LT+E GE
Sbjct: 1 MGIKHLYQIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLTSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVVT-DEEQL 296
+G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V D
Sbjct: 240 KVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVRNADHPDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+A T
Sbjct: 300 DFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 AVLKRKH 366
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/388 (51%), Positives = 271/388 (69%), Gaps = 6/388 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D + +KW
Sbjct: 240 GIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKVARELFIEPE-VADASAIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI---K 357
+ PDEEGL+ FL + F+ +RV +K+ +K+ +Q RL+SFFK + +T + K
Sbjct: 299 TEPDEEGLVKFLCGDRQFSEERVRNGAKKLLKSKHAQTQVRLDSFFKTLPSTPNAVHAAK 358
Query: 358 RKEPENTPKATTNKKSKAGGGG-GRKRK 384
RK E A K +GG GR+ K
Sbjct: 359 RKAEEAKKSANNKKAKTSGGAARGRRPK 386
>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374862|sp|B0DSN9.1|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 394
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/361 (52%), Positives = 270/361 (74%), Gaps = 7/361 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL+ +APK+++E + ++ FGRK+AIDASMSIYQFLI V + E+LTN+AGE
Sbjct: 1 MGIKGLTGLLSQHAPKAIQEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R++E G+KP Y+FDG+PP+LKK L+KR +R +A ++ EA E G
Sbjct: 61 TTSHLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKRLERREEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTVKVT++HN++C+RLL+LMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 VEDVDRFSRRTVKVTREHNEECRRLLRLMGIPVVIAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E + + LE L++ M QFIDLCIL GCDY + I+
Sbjct: 181 MDTLTFNAPILFRHLTFSEAKKQPISEINLKEALEGLDMNMSQFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G ++ALKLIR++G ++ ++ EN QIP++WP++EA+++F++P+V+ +E +
Sbjct: 241 GVGPKSALKLIREYGGLKGVVKHLRENSGCRGMQIPDEWPWEEAKKIFEKPDVLPADE-V 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF--KPVANTSA 354
+++W+ PD +GL+ FLV E GFN DRV K EK++ N QGRL+ FF KP +A
Sbjct: 300 ELEWTNPDVDGLVQFLVKEKGFNEDRVRKGAEKLQKFLNSKQQGRLDGFFSVKPKEKAAA 359
Query: 355 P 355
P
Sbjct: 360 P 360
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/388 (51%), Positives = 271/388 (69%), Gaps = 6/388 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D + +KW
Sbjct: 240 GIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKVARELFIEPE-VADASAIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI---K 357
+ PDEEGL+ FL + F+ +RV +K+ +K+ +Q RL+SFFK + +T + K
Sbjct: 299 TEPDEEGLVKFLCGDRQFSEERVRNGAKKLFKSKHAQTQVRLDSFFKTLPSTPNAVNAAK 358
Query: 358 RKEPENTPKATTNKKSKAGGGG-GRKRK 384
RK E A K +GG GR+ K
Sbjct: 359 RKAEEAKKSANNKKAKTSGGAARGRRPK 386
>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
gi|317374912|sp|A9VB27.1|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 258/354 (72%), Gaps = 4/354 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L+K++AD AP ++KE + ++ F RK+AIDASMSIYQFLI + G+ L NEAGE
Sbjct: 1 MGIHDLSKVIADKAPDAIKETEIKNLFDRKVAIDASMSIYQFLIAIRSEGSN-LVNEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++ G+KP+YVFDG+PP +K EL KR ++R +A +L EA E G+
Sbjct: 60 ATSHLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKRGARRKEAQANLEEATEQGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +EKFS+R V VT++HN+ C++LL LMG+P + AP+EAEAQCA L K G+V+A A+ED
Sbjct: 120 TEQMEKFSRRLVHVTREHNEQCRQLLTLMGIPFIIAPTEAEAQCAELVKGGKVFATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LRH+ +RK+P+ EF + K L ++M++FID+CIL GCDYCDSI+
Sbjct: 180 MDALTFGTTVLLRHMTFSEARKMPIQEFRLQK--GGLEMSMEEFIDMCILLGCDYCDSIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG Q A +LI++H +IET+L++++ ++Y IPEDW + EAR LF P+ VT + + KW
Sbjct: 238 GIGRQKAYQLIKEHKNIETVLKHLDPKKYVIPEDWHFAEARELFLRPD-VTPAAECEFKW 296
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ PD +GL+ F+ ENGF DR+ K+ EK+ A+ QGRL+SFF + + SA
Sbjct: 297 TTPDIDGLVKFMCQENGFAEDRIRKSAEKLVKARKGGQQGRLDSFFTAIPSGSA 350
>gi|145245469|ref|XP_001395002.1| DNA repair protein rad2 [Aspergillus niger CBS 513.88]
gi|317374885|sp|A5ABU3.1|FEN1_ASPNC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134079702|emb|CAK97128.1| unnamed protein product [Aspergillus niger]
Length = 395
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/367 (51%), Positives = 260/367 (70%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K +++FGRK+AIDASMSIY FLI V G +++++ GE
Sbjct: 1 MGIKQLYQVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSD-TGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++++AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + + LE L + QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETIL---ENINRERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR HGS+E +L EN ++++ +PEDWPY++AR LF P+V ++ +
Sbjct: 240 KVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVPEDWPYEDARELFLNPDVRDANDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD GL++FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ASLKRKH 366
>gi|367031946|ref|XP_003665256.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
gi|347012527|gb|AEO60011.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
Length = 395
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/356 (53%), Positives = 251/356 (70%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ + AP ++KE ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKQLFSIIKEEAPDAIKEGDIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+R+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VTK+HN +C+RLLKLMGVP + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 SEDVEKFSRRTVRVTKEHNAECQRLLKLMGVPYIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E V+K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDAPILLRHLTFSEQRKEPIQEIHVSKVLEGLNMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E N + RY +P+DWP+++AR LF P+V D+
Sbjct: 240 KVGPSTALKLIREHGSLEKVVEFMKNDPKGRYTVPDDWPFEDARELFFSPDVRQADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGL+ FLV E GF+ DRV +++ S Q R+E FFK + T
Sbjct: 300 DFKWEKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQSRIEGFFKVLPKT 355
>gi|336259381|ref|XP_003344492.1| hypothetical protein SMAC_08742 [Sordaria macrospora k-hell]
gi|317376194|sp|D1ZT73.1|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|380087456|emb|CCC05373.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/356 (53%), Positives = 249/356 (69%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ D AP ++KE ++ FGRK+AIDASMSIY FLI V R+ + L NEAGE
Sbjct: 1 MGIKQLFSIIKDEAPAAIKEGDIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E K+LE L + QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFHTPILLRHLTFSEQRKEPIQEIHTDKVLEGLGMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V D+
Sbjct: 240 KVGPSTALKLIREHGTLEEVVEWMKADPKGRYQIPEDWPFEDARALFFEPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGL+ FL E GF+ DRV A K++ S Q R+E FFK + T
Sbjct: 300 DFKWEKPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNMQTSQQARIEGFFKVLPKT 355
>gi|358369087|dbj|GAA85702.1| DNA-repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 395
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/367 (51%), Positives = 259/367 (70%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K +++FGRK+AIDASMSIY FLI V G +++++ GE
Sbjct: 1 MGIKQLYQVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSD-TGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++++AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F P LRHL RK P+ E + + LE L + QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETIL---ENINRERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR HGS+E +L EN ++++ +PEDWPY++AR LF P+V ++ +
Sbjct: 240 KVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVPEDWPYEDARELFLNPDVRDANDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD GL+ FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDVPGLVEFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPVARTDEEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ASLKRKH 366
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/367 (52%), Positives = 260/367 (70%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K + +++FGRK+AIDASMSIY FL+ V R+ + L +E GE
Sbjct: 1 MGIKHLYQVIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLVAV-RSDGQQLMSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R++E G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++CK+LLKLMGVP + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V D
Sbjct: 240 KVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDARELFFDPDVRKADHPDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E F+ DRV +++ + Q RLE FFKP+A T
Sbjct: 300 NFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPIAKTEQEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ATLKRKH 366
>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
gi|317374898|sp|B4P5U9.1|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
Length = 387
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/375 (51%), Positives = 264/375 (70%), Gaps = 14/375 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + +++FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
IEKF++R V+VTK+H ++ K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAGIEKFNRRLVRVTKEHANEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L++ +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLEGLSINSREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V + + + +KW
Sbjct: 240 GIGPKRAIELINNYRDIETILDNLDSSKYTVPENWNYKVARELFIEPE-VANADNIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ FL + F+ +RV +K+ +K +Q RL+SFFK +
Sbjct: 299 VEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFFKTLP---------- 348
Query: 361 PENTPKATTNKKSKA 375
+TP AT K KA
Sbjct: 349 --STPNATNAAKRKA 361
>gi|317374931|sp|A1CJ75.2|FEN1_ASPCL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 263/369 (71%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K +++FGRK+AIDASMSIY FLI V R+ + L +E+GE
Sbjct: 1 MGIKHLFQVIQENAPDAVKSGDIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKFS+RTV+VT++HN +CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEIEKFSRRTVRVTREHNAECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + ++LE L++ QFID+CIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V D +
Sbjct: 240 KVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPEDWPYQDARELFHHPDVRAADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD E L++FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVAKTDAEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ASLKRKHDE 368
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/366 (53%), Positives = 258/366 (70%), Gaps = 8/366 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ ++ P+++K+ + ++ FGRK+AIDASMSIY FLI V R+ + L NE GE
Sbjct: 1 MGIKHLYQLIDEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA E G
Sbjct: 60 TTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VTK+HN +C+RLLKLMG+P + AP+EAEAQCAAL K G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTKEHNAECQRLLKLMGIPYIIAPTEAEAQCAALAKGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK P++E + K+LE L + QFIDLCIL GCDY D I+
Sbjct: 180 MDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLEGLAMDQKQFIDLCILLGCDYLDPIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V+ D +
Sbjct: 240 GIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVLPADAPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+ T+
Sbjct: 300 DFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPIEKTAEEK 359
Query: 354 APIKRK 359
A +KRK
Sbjct: 360 ATLKRK 365
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/375 (51%), Positives = 262/375 (69%), Gaps = 14/375 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + + +FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +AG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 DAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+LE L++ +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V + E + +KW
Sbjct: 240 GIGPKRAIELINNYRDIETILDNLDSSKYTVPENWNYKVARELFIEPE-VANAESIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
PDEEGL+ FL + F+ +RV +K+ +K +Q RL+SFFK +
Sbjct: 299 VEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFFKTLP---------- 348
Query: 361 PENTPKATTNKKSKA 375
+TP AT K KA
Sbjct: 349 --STPNATNAAKRKA 361
>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 262/347 (75%), Gaps = 7/347 (2%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV 61
GI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGET 59
Query: 62 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 121
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG +
Sbjct: 60 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE 119
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
+++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDM
Sbjct: 120 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 179
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
D LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRG
Sbjct: 180 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239
Query: 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 301
IG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KWS
Sbjct: 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKWS 298
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR-LESFFK 347
P+EE LI F+ E F+ +R+ ++++ +KS QG LE F+
Sbjct: 299 EPNEEELIKFMCGEKQFSEERIRSGVKRL----SKSRQGSTLEVLFQ 341
>gi|336467513|gb|EGO55677.1| DNA-repair protein rad2 [Neurospora tetrasperma FGSC 2508]
Length = 396
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/358 (54%), Positives = 251/358 (70%), Gaps = 7/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAID--ASMSIYQFLIVVGRTGTEMLTNEA 58
MGIK L ++ D AP ++KE + ++ FGRK+AI SMSIY FLI V R+ + L NEA
Sbjct: 1 MGIKQLFSVIKDEAPDAIKEGEIKNQFGRKVAIKKKTSMSIYSFLIAV-RSDGQQLMNEA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E
Sbjct: 60 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKET 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA AS
Sbjct: 120 GTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAAS 179
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
EDMD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GCDY D
Sbjct: 180 EDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDP 239
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEE 294
I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V D+
Sbjct: 240 IPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARALFFEPDVRPADDP 299
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK + T
Sbjct: 300 LCDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKT 357
>gi|395330939|gb|EJF63321.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 429
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/391 (49%), Positives = 266/391 (68%), Gaps = 40/391 (10%)
Query: 1 MGIKGLTKLLADNAPKSMK------------------EQKFESYFGRKIAIDASMSIYQF 42
MGIKGLT LLA++APKS + E + ++ FGRK+AIDASMSIYQF
Sbjct: 1 MGIKGLTALLAEHAPKSFQASHDLCCRCRRADPCCPQEHEIKTLFGRKVAIDASMSIYQF 60
Query: 43 LIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRY 102
LI V + E+LTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+
Sbjct: 61 LIAVRQKDGELLTNDAGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRF 120
Query: 103 SKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEA 162
KR +A +D EA E G ED+++FS+RTVKVT++HN++C++LL LMG+P V APSEAEA
Sbjct: 121 EKREEAKEDGEEAKETGTAEDVDRFSRRTVKVTREHNEECRKLLTLMGIPFVVAPSEAEA 180
Query: 163 QCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMD 222
QCA L + G+VYA SEDMD+LTFGAP LRHL +RK P+ E + K LE L + M
Sbjct: 181 QCAELARGGKVYAAGSEDMDTLTFGAPILLRHLTFSEARKTPISEISLEKALEGLEMDMS 240
Query: 223 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-------------- 268
QF +LCIL GCDY + I+G+G + ALKL+R+HG++ ++ ++ RE+
Sbjct: 241 QFTELCILLGCDYLEPIKGVGPKGALKLLREHGTLGKVVAHL-REKAAEKEDAGEDGGKK 299
Query: 269 ----YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
QIP++WP++ A+ LF +P+ VT ++L+++W +PD EGL++FLV E GFN +RV
Sbjct: 300 KKGGVQIPDEWPWEAAKALFSKPD-VTPADELELEWKSPDIEGLVDFLVKEKGFNEERVR 358
Query: 325 KAIEKIKAAKNKSSQGRLESFF--KPVANTS 353
K EK+ N QGRL+ FF KP A+ +
Sbjct: 359 KGGEKLAKHLNAKQQGRLDGFFTAKPKASPT 389
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/366 (51%), Positives = 256/366 (69%), Gaps = 1/366 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK LT L+ DNAP S+K ++YFGR IAIDAS S+YQFLI + + LTN+ GE
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNILKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHLQGMF RTI+L+ G+KPIYVFDG P LK ELAKR ++R +A ++L EA E G
Sbjct: 61 TTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++KF+KR + VT++ N+DC +LL LMGVP+V+AP EAEAQCA + K G+ +A SED
Sbjct: 121 NEEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLT G+ LR L ++K+P++EFE+ +LE L LT D+FIDL IL GCDYCDSI+
Sbjct: 181 MDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDYCDSIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI++H S+E +++++++ +Y +PE +PY E R LFK P V+ ++ +W
Sbjct: 241 GIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPADQLPPFQW 300
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI-KRK 359
PD EGL FLV E GF+ RV + IEK+K KN S Q R++SF + P K+K
Sbjct: 301 KDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITVIKKPEDPNDKKK 360
Query: 360 EPENTP 365
+ TP
Sbjct: 361 KVTKTP 366
>gi|322700750|gb|EFY92503.1| DNA-repair protein rad2 [Metarhizium acridum CQMa 102]
Length = 426
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/389 (49%), Positives = 259/389 (66%), Gaps = 36/389 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP+++KE + +++FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKQLFQIIKEEAPEAIKEGEIKNHFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLKLMGIPFIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ----------------- 223
MD+L F P LRHL RK P+ E + K+LE LN+ Q
Sbjct: 180 MDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERSQVSFPTSKIEILGYYDGK 239
Query: 224 --------------FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-- 267
F+DLCIL GCDY D + IG TALKLIR+HG++E +++ I R+
Sbjct: 240 FVRLTKALRLQKTKFVDLCILLGCDYLDPVPKIGPTTALKLIREHGTLEKVVDAIERDPK 299
Query: 268 -RYQIPEDWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 325
+Y +PEDWPY++AR LF EP+V D+ KW PD EGL+ FLV+E GF+ DRV
Sbjct: 300 KKYTLPEDWPYKDARDLFFEPDVRKADDPLCDFKWDKPDVEGLVTFLVTEKGFSEDRVRG 359
Query: 326 AIEKIKAAKNKSSQGRLESFFKPVANTSA 354
A +++ S Q RLE FFKP+ T A
Sbjct: 360 AAARLEKNLKTSQQARLEGFFKPIPKTDA 388
>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
Length = 394
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/366 (52%), Positives = 256/366 (69%), Gaps = 8/366 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ + AP ++KE +++FGRK+AIDASMSIY FLI V R+ + LTNE+GE
Sbjct: 1 MGIKHLFQIIKEEAPDAIKEGDIKAHFGRKVAIDASMSIYSFLIAV-RSEGQQLTNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT L EA E G
Sbjct: 60 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATVGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN DC++LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNADCQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL +RK P+ E + K+L L + QF+D CIL GCDY D I
Sbjct: 180 MDTLTFDTPILLRHLTFSEARKEPIQEVHIDKVLAGLGMERKQFVDFCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
IG TALKLIR+HG +ET++E N +++Y +P+DWPYQ+AR LF P+V D+
Sbjct: 240 KIGPSTALKLIREHGDLETLVEAFKNDPKQKYVVPDDWPYQDARELFLNPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW PD +GL+ +LV E GF+ DRV A +++ S Q RL+ FFK + T
Sbjct: 300 DFKWEKPDMDGLVQYLVMEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVIPKTEEEK 359
Query: 354 APIKRK 359
A KRK
Sbjct: 360 ASAKRK 365
>gi|449549056|gb|EMD40022.1| hypothetical protein CERSUDRAFT_132799 [Ceriporiopsis subvermispora
B]
Length = 409
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/363 (51%), Positives = 261/363 (71%), Gaps = 19/363 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+ +N+P ++ E + ++ FGRK+AIDASMSIYQFLI V + E+LTN+AGE
Sbjct: 1 MGIKGLTSLIVENSPNAISEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ +R +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKAGVLSKRFERREEAKEEGEEAKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+E+F++RTVKVTK+HN++C+RLL LMG+P V APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDVERFTRRTVKVTKEHNEECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL +RK P+ E + K L+ L + M QFIDLCIL GCDY + I+
Sbjct: 181 MDTLTFASPILLRHLTFSEARKTPISEINLQKALDGLEMNMSQFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERY-----------------QIPEDWPYQEARRL 283
G+G ++ALKLI++HGS+ ++E++ RE+ QIP++WP++EA++
Sbjct: 241 GVGPKSALKLIKEHGSLGNVIEHL-REKVAAKEEAAEDGKKKKGGIQIPDEWPWEEAKKF 299
Query: 284 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 343
F++P+V+ +Q++++W PD EGL+ FLV E GFN +RV K EK+ N QGRL+
Sbjct: 300 FEKPDVMP-ADQVELEWKNPDVEGLVEFLVKEKGFNEERVRKGAEKLTKFLNAKQQGRLD 358
Query: 344 SFF 346
FF
Sbjct: 359 GFF 361
>gi|346322835|gb|EGX92433.1| DNA-repair protein rad2 [Cordyceps militaris CM01]
Length = 394
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/358 (52%), Positives = 253/358 (70%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ + AP+++KE + + +FGRK+AIDASMSIY FLI V R+ + LTN+ GE
Sbjct: 1 MGIKQLFSIIKEEAPEAIKEGEIKQHFGRKVAIDASMSIYSFLIAV-RSDGQQLTNDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQTALEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +C+RLL LMG+P + AP+EAEAQCA L K+G+V+A ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECQRLLALMGIPFIVAPTEAEAQCAVLAKAGKVFAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + K+LE LN+ QF+DLCIL GCDY D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERKQFVDLCILLGCDYLDPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR++G++E ++E N ++++Y IPEDWPY++AR LF P+V D+
Sbjct: 240 KVGPTTALKLIREYGTLEKVVEAMQNDSKKKYIIPEDWPYEDARDLFFSPDVRPADDPLC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+KW PD +GL+ FLV E GF+ DRV +++ S Q RLE FFK V T A
Sbjct: 300 DVKWDKPDMDGLVKFLVGEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKVVPKTEA 357
>gi|440470255|gb|ELQ39332.1| DNA-repair protein rad2 [Magnaporthe oryzae Y34]
gi|440487391|gb|ELQ67182.1| DNA-repair protein rad2 [Magnaporthe oryzae P131]
Length = 416
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/378 (51%), Positives = 259/378 (68%), Gaps = 26/378 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++ +NAP ++K + ++ FGRK+AIDASMSIY FLI V R+ EMLTNE G+
Sbjct: 1 MGIKQLFTIIKENAPAAIKTGEIKNQFGRKVAIDASMSIYSFLIAV-RSNGEMLTNEDGQ 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGLEEARETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C++LLKLMG+P + AP+EAEAQCA L ++G+V+A ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGKVFAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-------TMD----------- 222
MD+L F +P LRHL +RK P+ E V K+LE L++ T D
Sbjct: 180 MDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQVRCTSDMVNVYQERPAD 239
Query: 223 ----QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWP 276
QF+DLCIL GCDY D I +G TALKLIR+HGS+ETI+E + + +Y +PEDWP
Sbjct: 240 SFNKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWP 299
Query: 277 YQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN 335
+++AR LF P V D KW PD EGL+ +LV+E GF+ DRV +++ A
Sbjct: 300 FEDARDLFFNPAVHPADHPDCNFKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALG 359
Query: 336 KSSQGRLESFFKPVANTS 353
S Q RLE FFKPVA T+
Sbjct: 360 TSQQQRLEGFFKPVARTA 377
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/356 (53%), Positives = 252/356 (70%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ ++AP ++K + ++ FGRK+AIDASMSIY FLI V R+G E L NE+GE
Sbjct: 29 MGIKHLHQLIQEHAPDAIKAGEIKNQFGRKVAIDASMSIYSFLIAV-RSGGEQLMNESGE 87
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA E G
Sbjct: 88 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAEEAKETGT 147
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L + G+VYA ASED
Sbjct: 148 AEDVEKFSRRTVRVTREHNEECRRLLKLMGIPFIVAPTEAEAQCAVLARGGKVYAAASED 207
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK P++E + K+LE L + QFIDLCIL GCDY D I+
Sbjct: 208 MDTLTFNSPILLRHLTFSEQRKEPILEIHLDKVLEGLAMDRTQFIDLCILLGCDYLDPIK 267
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
GIG TALKLIR+H +E ++++I + + IPEDWP+ +AR LF EP+V D+ +
Sbjct: 268 GIGPSTALKLIREHKDLEGVVKHIQSQPKGKLTIPEDWPFADARLLFLEPDVRPADDPEC 327
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW APD EGL+ FLV E F+ DRV K+ + Q RLE FFKP+ T
Sbjct: 328 DFKWEAPDVEGLVKFLVEEKHFSEDRVRNGAAKLNKNMKTAQQSRLEGFFKPIQKT 383
>gi|393232393|gb|EJD39975.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 400
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/363 (51%), Positives = 266/363 (73%), Gaps = 17/363 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT+L+ ++AP + KE + ++ FGRK+AIDASMSIYQFLI V + ++LTNEAGE
Sbjct: 1 MGIKGLTQLVREHAPNAFKEHEIKTLFGRKVAIDASMSIYQFLIAVRQNDGQLLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ +R +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKSGVLSKRFERREEAKEEGEEAKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+E+F++RTVKVT++HN++C+RLL+LMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDVERFTRRTVKVTREHNEECRRLLRLMGIPVVIAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAP RHL ++K P+ E ++ K L+ LN+TMDQFI+LC+L GCDY + I+
Sbjct: 181 MDTLTFGAPILYRHLTFSEAKKQPISEIDLQKALDGLNMTMDQFIELCLLLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRER----------------YQIPEDWPYQEARRLF 284
G+G ++ALK +R+ GS++ I++++ ++ Q+PE WP++EA++LF
Sbjct: 241 GVGPKSALKYMREMGSLDKIVDHLREKQADRDEAVDAGKAKKGGVQVPEHWPWEEAKKLF 300
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
+P+ VT ++++++W PD +GL++FLV E GFN DRV K EK+ QGRL+
Sbjct: 301 IKPD-VTPADEVELEWKNPDVDGLVDFLVKEKGFNEDRVRKGAEKLTKFLAAKQQGRLDG 359
Query: 345 FFK 347
FFK
Sbjct: 360 FFK 362
>gi|164426998|ref|XP_001728355.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
gi|157071561|gb|EDO65264.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
Length = 396
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/358 (53%), Positives = 252/358 (70%), Gaps = 7/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDA--SMSIYQFLIVVGRTGTEMLTNEA 58
MGIK L ++ D AP ++KE + ++ FGRK+AI + SMSIY FLI V R+ + L NEA
Sbjct: 1 MGIKQLFSVIKDEAPDAIKEGEIKNQFGRKVAIVSFISMSIYSFLIAV-RSDGQQLMNEA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E
Sbjct: 60 GETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKET 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G ED+EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+VYA AS
Sbjct: 120 GTAEDVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAAS 179
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
EDMD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GCDY D
Sbjct: 180 EDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDP 239
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEE 294
I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V D+
Sbjct: 240 IPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARTLFFEPDVRPADDP 299
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK + T
Sbjct: 300 LCDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKT 357
>gi|339253602|ref|XP_003372024.1| flap endonuclease 1a [Trichinella spiralis]
gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
Length = 381
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/373 (49%), Positives = 265/373 (71%), Gaps = 17/373 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+K++AD +P ++ E+ S+FGR IAIDASMS+YQFLI + + G++ L+ E+GE
Sbjct: 1 MGIKGLSKVIADFSPNAITERTMNSFFGRTIAIDASMSLYQFLIAIRQDGSQ-LSAESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE----------LAKRYSKRADATD 110
TSHL GMF RTIR++E G+KP+YVFDG+PP LK E L KR +R +A +
Sbjct: 60 TTSHLIGMFYRTIRMVENGIKPVYVFDGKPPVLKSDEVHFLICTFVSLDKRTERRTEAEE 119
Query: 111 DLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 170
A+AV+AG+ E I KFS+R KV+K+H D+CKRLLKLMG+P +EAP EAEAQCAAL K+
Sbjct: 120 KYADAVQAGDSEAINKFSRRLTKVSKEHVDECKRLLKLMGIPYIEAPCEAEAQCAALVKA 179
Query: 171 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 230
+V+A A+EDMD+LTFG+ LR+L ++K+P+ EF +L LN+T ++F+D CIL
Sbjct: 180 KKVFAAATEDMDTLTFGSDIMLRYLTFSEAKKMPIKEFRFDDVLHGLNMTHEEFVDFCIL 239
Query: 231 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
GCDYC +I+G+G + A LI+Q+ ++E I+E +++++Y IPE+W Y+ R+LF EPEV+
Sbjct: 240 LGCDYCPTIKGVGPKKAYDLIKQYRNLEVIVEKLDKKKYPIPENWQYKAVRKLFLEPEVI 299
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
D +++ W PDE+GLI FLV+E F +RV K+ +A+ S+QGR++SFF
Sbjct: 300 -DCNTIELTWKDPDEQGLITFLVNEKNFGHNRVVNGCAKLLSARRSSTQGRIDSFF---- 354
Query: 351 NTSAPIKRKEPEN 363
T K+K P +
Sbjct: 355 -TVLVTKKKRPAD 366
>gi|119493310|ref|XP_001263845.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
gi|317374917|sp|A1D8A4.1|FEN1_NEOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119412005|gb|EAW21948.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
Length = 395
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 260/369 (70%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K +++FGRK+AIDASMSIY FLI V R+ + L +E+GE
Sbjct: 1 MGIKHLFQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRTLEGLGMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR+HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V D +
Sbjct: 240 KVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEDWPYQDARELFLHPDVREADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ASLKRKHDE 368
>gi|330689555|pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
gi|330689556|pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/347 (55%), Positives = 261/347 (75%), Gaps = 7/347 (2%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV 61
GI+GL KL+AD AP +++E +SYFGRK+AIDASMSIYQFLI V R G ++L NE GE
Sbjct: 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGET 59
Query: 62 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 121
TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L +A AG +
Sbjct: 60 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE 119
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
+++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDM
Sbjct: 120 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM 179
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G DYC+SIRG
Sbjct: 180 ACLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239
Query: 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 301
IG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D E +++KWS
Sbjct: 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-DPESVELKWS 298
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR-LESFFK 347
P+EE LI F+ E F+ +R+ ++++ +KS QG LE F+
Sbjct: 299 EPNEEELIKFMCGEKQFSEERIRSGVKRL----SKSRQGSTLEVLFQ 341
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/364 (50%), Positives = 258/364 (70%), Gaps = 6/364 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +N P ++KE + ++ FGRK+AIDASMS+Y FL+ V R+G E L NE+GE
Sbjct: 1 MGIKNLYQVIKENCPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAV-RSGGEQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + +A E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQEAHEDAKEIGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN + +RLLKLMGVP + AP+EAEAQCA + ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNQEAQRLLKLMGVPYIIAPTEAEAQCAVIARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LR L RK P+ E + ++LE L++ +QFIDLCIL GCDY D ++
Sbjct: 180 MDTLTFASPVLLRKLTFSEQRKEPIQEIHLDRVLEGLDMDQNQFIDLCILLGCDYLDPVK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQI 298
GIG + AL LI++H ++E ++ I + +Y +PEDWPYQ+AR LF+EP+V D +
Sbjct: 240 GIGPKNALALIKEHKNLEGVVAMIEKTGKYTLPEDWPYQDARVLFQEPDVRQADHPECDF 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---AP 355
KW PD +GL+ FLV E GF+ DRV +++ S Q RLE FFK V T A
Sbjct: 300 KWENPDVDGLVKFLVEEKGFSEDRVRSGAARLQKNLKSSQQSRLEGFFKAVPKTEEEKAS 359
Query: 356 IKRK 359
+KRK
Sbjct: 360 LKRK 363
>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
gi|317374897|sp|B4MR84.1|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
Length = 388
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 259/352 (73%), Gaps = 2/352 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP++++E + +++FGRK+AIDASM +YQFLI V G ++ T G+
Sbjct: 1 MGILGLSKLIADLAPQAIRESEIKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVN-GD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A EAG+
Sbjct: 60 PTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +IEKF++R V+VTK+H + K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+ED
Sbjct: 120 EAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+ + LR+L +RK+PV EF K+L+ L L +FIDLCIL GCDYC+SI+
Sbjct: 180 MDALTFGSSKLLRYLTYSEARKMPVKEFTYEKLLQGLELNQREFIDLCILLGCDYCESIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D + +KW
Sbjct: 240 GIGPKRAIELINSYRDIETILDNLDTSKYTVPENWNYKVARELFIEPE-VADASAIDLKW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ PDEEGL+ FL E F+ +RV +K+ +K +Q RL+SFF+ + ++
Sbjct: 299 TEPDEEGLVKFLCGERQFSEERVRGGAKKLLKSKKAQTQVRLDSFFQTLPSS 350
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/366 (52%), Positives = 257/366 (70%), Gaps = 8/366 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ ++ P+++K+ + ++ FGRK+AIDASMSIY FLI V R+ + L +E GE
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA E G
Sbjct: 60 TTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VTK+HN +C++LLKLMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTKEHNAECQQLLKLMGIPYIVAPTEAEAQCATLAKGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK P++E + K+LE L + QFIDLCIL GCDY D I+
Sbjct: 180 MDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLEGLEMDQKQFIDLCILLGCDYLDPIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V+ D +
Sbjct: 240 GIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVLPADAPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+ T+
Sbjct: 300 DFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPIEKTAEEK 359
Query: 354 APIKRK 359
A +KRK
Sbjct: 360 ATLKRK 365
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/371 (52%), Positives = 259/371 (69%), Gaps = 12/371 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAI----DASMSIYQFLIVVGRTGTEMLTN 56
MGIK L +++++NAP ++K + +++FGRK+AI SMSIY FLI V R+ + L +
Sbjct: 1 MGIKHLYQVISENAPDAVKTGEIKNHFGRKVAIVRINRISMSIYSFLIAV-RSDGQQLMS 59
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
+AGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A + EA
Sbjct: 60 DAGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAK 119
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA
Sbjct: 120 ETGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAA 179
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ASEDMD+L F AP LRHL RK P+ E + K LE L + QFIDLCIL GCDY
Sbjct: 180 ASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYL 239
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TD 292
+ I +G TALKLIR+HGS+E ++E I +++Y IP+DWPY+EAR LF P+V D
Sbjct: 240 EPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPDDWPYKEARELFFNPDVRKAD 299
Query: 293 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ Q KW +PD EGLI FLV+E GF+ DRV ++ + Q RLE FFKPV T
Sbjct: 300 DPQCDFKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFFKPVTKT 359
Query: 353 S---APIKRKE 360
A +KRK
Sbjct: 360 EAEKASLKRKH 370
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/365 (52%), Positives = 257/365 (70%), Gaps = 8/365 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ ++ P+++K+ + ++ FGRK+AIDASMSIY FLI V R+ + L +E GE
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA E G
Sbjct: 60 TTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL + G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL RK P++E + K+LE L + QFIDLCIL GCDY D I+
Sbjct: 180 MDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDPIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V D+ +
Sbjct: 240 GIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVRPADDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+ T+
Sbjct: 300 DFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPIEKTAEQK 359
Query: 354 APIKR 358
A +KR
Sbjct: 360 ATLKR 364
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/385 (47%), Positives = 269/385 (69%), Gaps = 9/385 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L+K++ D++P S++ ++F+ YFGRK+A+DASM +YQFLI V + G+++ T E+GE
Sbjct: 1 MGVKDLSKVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQT-ESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PP +K EL KR +R +A +AVE G+
Sbjct: 60 TTSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + KF KR VKVTK+ +++ KRL+ LMG+PV++AP EAEAQCAAL K+G+V+A SED
Sbjct: 120 ETSVNKFEKRLVKVTKEQSEEAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LR ++ ++K+PV E + ++L++ + M QF+DLCIL GCDY +IR
Sbjct: 180 MDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A +LI+++ IE +LE IN+ +Y IP+DW Y+EARRLF EP+V+ + E L++ W
Sbjct: 240 GIGPKKAFELIKKYECIENVLETINQTKYPIPQDWQYKEARRLFLEPDVM-NCENLELVW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK-PVANTSAPIKRK 359
PD EG++ FL E FN DRV ++ +++ + + Q R++SFF TS KRK
Sbjct: 299 KEPDVEGIVQFLCVEKSFNEDRVRGSLTRMQKGRQAAQQARIDSFFSVSKVVTSETTKRK 358
Query: 360 EPENTPKATTNKKSKAGGGGGRKRK 384
E N K G G+K K
Sbjct: 359 NEEK------NNLKKRGPSLGKKAK 377
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 256/367 (69%), Gaps = 6/367 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++ +N P ++KE + ++ FGRK+AIDASMS+Y FL+ V R+G E L ++ GE
Sbjct: 1 MGIKGLYPIIKENCPDAVKEGEIKTQFGRKVAIDASMSLYSFLVAV-RSGGEQLMSDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQESHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN + +RLLKLMG+P + AP+EAEAQCA L + G+V+A ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAEAQRLLKLMGIPYIIAPTEAEAQCAVLARGGKVFAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P +R L RK PV E + ++LE L + QFID CIL GCDY D ++
Sbjct: 180 MDTLTFASPVLVRKLTFAEQRKEPVQEIHLDRVLEGLEMDQTQFIDFCILLGCDYLDPVK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQI 298
GIG ++AL LI++H ++E ++ I + +Y +PEDWPYQ+AR+LF EP+V DE + +
Sbjct: 240 GIGPKSALALIKEHKTLENVVVYIEKSGKYTLPEDWPYQDARQLFLEPDVRQADEPECEF 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---AP 355
KW APD +GL+ FLV E GF+ DRV +++ Q RLE FFK T A
Sbjct: 300 KWEAPDVDGLVKFLVEEKGFSEDRVRSGASRLQKNLKSGQQSRLEGFFKVQEKTDEQKAS 359
Query: 356 IKRKEPE 362
+KRK E
Sbjct: 360 LKRKNEE 366
>gi|409042314|gb|EKM51798.1| hypothetical protein PHACADRAFT_102664 [Phanerochaete carnosa
HHB-10118-sp]
Length = 384
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/349 (53%), Positives = 261/349 (74%), Gaps = 5/349 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT ++A++AP ++KE + ++ FGRK+AIDASMSIYQFLI V + E+LTN+AGE
Sbjct: 1 MGIKGLTAIIAEHAPNAIKEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR+++ G+KP+YVFDG+PP+LK L+KR+ +R +A +D EA E G
Sbjct: 61 TTSHLMGFFYRTIRMVDNGIKPLYVFDGKPPELKSGVLSKRFERREEAKEDEEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+R VKVT++ N++C+RLL LMGVP V APSEAEAQCA L + G+VYA SED
Sbjct: 121 TEDVDRFSRRQVKVTREQNEECRRLLTLMGVPWVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF + LRHL +RK P+ E + K+LE L ++M QFIDLCIL GCDY + I+
Sbjct: 181 MDTLTFNSAILLRHLTFSEARKAPISEINLEKVLEGLEMSMSQFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRER---YQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
G+G ++ALKLIR++G + ++E++ RE+ +P++WP++EA++LF++P+ VT +++
Sbjct: 241 GVGPKSALKLIREYGGLAEVVEHL-REKCGGISVPDEWPWEEAKKLFEKPD-VTPASEVE 298
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I+W PD EGL++FLV E GFN DRV K EK+ QGRL+ FF
Sbjct: 299 IEWKGPDVEGLVDFLVKEKGFNEDRVRKGAEKLTKGVAAKQQGRLDGFF 347
>gi|115402747|ref|XP_001217450.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
gi|114189296|gb|EAU30996.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
Length = 402
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/376 (50%), Positives = 261/376 (69%), Gaps = 15/376 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAI-------DASMSIYQFLIVVGRTGTEM 53
MGIK L +++++NAP ++K +++FGRK+AI +SMSIY FLI V G ++
Sbjct: 1 MGIKQLYQVISENAPDAIKAGDIKNHFGRKVAIVPSQLTPPSSMSIYSFLIAVRSEGQQL 60
Query: 54 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
+++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+
Sbjct: 61 MSD-TGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHE 119
Query: 114 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 120 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 179
Query: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
YA ASEDMD+L F AP LRHL RK P+ E +++ LE L++ +FIDLCIL GC
Sbjct: 180 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLGC 239
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 290
DY + I +G TALKLIR HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V
Sbjct: 240 DYLEPIPKVGPNTALKLIRDHGSLEKVVEYIQNDPKKKYVIPEDWPYQDARELFLHPDVR 299
Query: 291 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
++ + KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 300 DANDPECDFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 359
Query: 350 ANTS---APIKRKEPE 362
A + A +KRK E
Sbjct: 360 ARSDEEKATLKRKHDE 375
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/361 (51%), Positives = 255/361 (70%), Gaps = 15/361 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL KLL ++ P +++ + +++ GRK+AIDASMS+YQF+I V + + LTNE GE
Sbjct: 1 MGIKGLNKLLMEHCPAALRSSEIKNFGGRKVAIDASMSLYQFVIAVRQADGQQLTNENGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA---TDDLAEAVE 117
TSHL GMF RT+R+++ G+KP+YVFDG+PP LK ELAKR +R +A ++L + VE
Sbjct: 61 TTSHLMGMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKERREEALKKIEELKQQVE 120
Query: 118 AGN--------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCK 169
G +ED+ +F KRTV+VT + ND+ K+LL LMG+P+VEAP EAEAQCA L +
Sbjct: 121 DGEEGEETKEAQEDVTRFEKRTVRVTPEQNDEAKKLLTLMGIPIVEAPCEAEAQCAKLAE 180
Query: 170 SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 229
+G+VYA ASEDMD+L FG+P LRHL ++K+P+ E AKILE L +T QFIDLCI
Sbjct: 181 AGKVYAAASEDMDTLCFGSPVLLRHLTFSEAKKMPISEINFAKILEGLEMTHAQFIDLCI 240
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKE 286
L GCDY D+IRG+G QTALKL+++HGS+E I+E+I + + ++PE+WPYQE R L +
Sbjct: 241 LLGCDYADTIRGVGPQTALKLMKEHGSLEKIVEHIEKNPSGKLKVPENWPYQEVRALLQA 300
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P+V+ D IKW+ PD EGL++FLV + GF+ DRV ++ Q RL+ FF
Sbjct: 301 PDVL-DSSSCDIKWNNPDVEGLVDFLVRDKGFSEDRVRAGAARLMKQVKVKPQARLDGFF 359
Query: 347 K 347
K
Sbjct: 360 K 360
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/356 (52%), Positives = 249/356 (69%), Gaps = 5/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++L + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKNLFQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +C++LLKLMGVP + AP+EAEAQCA L K G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECQKLLKLMGVPFIIAPTEAEAQCAVLAKGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL RK P+ E + K++E L + +QF+DLCIL GCDY D +
Sbjct: 180 MDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGCDYLDPVP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALKLIR+H ++E +++ I + +Y +PEDWP+ +AR LF P+V D
Sbjct: 240 KVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLPEDWPFADARELFLNPDVRPADHADC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW PD EGL+ FLV+E GF+ DRV A +++ S Q RL+ FFK + T
Sbjct: 300 DFKWEKPDIEGLVTFLVTEKGFSEDRVRSAGARLEKNMKGSQQSRLDGFFKMMPKT 355
>gi|317374927|sp|Q4WWJ1.2|FEN1_ASPFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 259/369 (70%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K +++FGRK+AIDASMSIY FLI V R+ + L +E+GE
Sbjct: 1 MGIKHLFQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR+HGS+E ++E I +++Y IPE WPYQ+AR LF P+V D +
Sbjct: 240 KVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEYWPYQDARELFLHPDVREADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPVARTDEEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ASLKRKHDE 368
>gi|317374932|sp|B0XZ33.2|FEN1_ASPFC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 259/369 (70%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ +NAP ++K +++FGRK+AIDASMSIY FLI V R+ + L +E+GE
Sbjct: 1 MGIKHLFQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR+HGS+E ++E I +++Y IPE WPYQ+AR LF P+V D +
Sbjct: 240 KVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEYWPYQDARELFLHPDVREADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ASLKRKHDE 368
>gi|238506000|ref|XP_002384202.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|317151109|ref|XP_001824453.2| DNA repair protein rad2 [Aspergillus oryzae RIB40]
gi|317374884|sp|B8NV37.1|FEN1_ASPFN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220690316|gb|EED46666.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|391868743|gb|EIT77953.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 395
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 261/369 (70%), Gaps = 8/369 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++A+NAP ++K +++FGRK+AIDASMSIY FLI V G +++++ GE
Sbjct: 1 MGIKHLYQVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSD-TGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT+ HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTRDHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P++E +++ LE L++ QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFEAPILLRHLTFSEQRKEPILEIHLSRALEGLDMDRKQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV-TDEEQL 296
+G TALKLIR+ GS+E ++E++ +++Y IPEDWPYQ+AR LF P+V
Sbjct: 240 KVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIPEDWPYQDARELFLNPDVREASHPDC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVARTDEEK 359
Query: 354 APIKRKEPE 362
A +KRK E
Sbjct: 360 ANLKRKHDE 368
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/362 (51%), Positives = 261/362 (72%), Gaps = 5/362 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++D AP ++KE + ++YFGRK+AIDASMS+YQFLI V + + L E+GE
Sbjct: 1 MGIKGLTALISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A + E + +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEEEQKDVAD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++ ++R V+ T+QHN++ + LLKLMG+P V APSEAEAQCA L ++G+VYA SED
Sbjct: 121 AEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P L+HL +K+PV + ++AK LE L +TM QFIDLCIL GCDY D I+
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLAKALEGLQMTMAQFIDLCILLGCDYLDPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
GIG +TALKLIR+H ++E ++ ++ ++ QIP+ WP+QEAR++F+ P+V + L
Sbjct: 241 GIGPKTALKLIREHKTLENVVHHLKEDGKKSVQIPDHWPFQEARKIFESPDVQKGVD-LD 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
+KW APD E ++ FL + GF+ DRV K EK++ + ++ QGRL+ FF V SAP K
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFT-VKPGSAPPK 358
Query: 358 RK 359
RK
Sbjct: 359 RK 360
>gi|449299844|gb|EMC95857.1| hypothetical protein BAUCODRAFT_109503 [Baudoinia compniacensis
UAMH 10762]
Length = 393
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/349 (51%), Positives = 248/349 (71%), Gaps = 3/349 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ DNAP ++KE + ++ FGRK+AIDASMS+Y FL+ V R+ + L ++ GE
Sbjct: 1 MGIKNLAQVIKDNAPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAV-RSDGQQLMSDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A + EA E G
Sbjct: 60 TTSHLMGLFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQESHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN + +RLLKLMGVP + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNAEAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK P+ E + +L L + + QFIDLCIL GCDY D ++
Sbjct: 180 MDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDAVLSGLEMDLPQFIDLCILLGCDYVDPVK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQI 298
GIG + AL LIR+H ++E ++E++ + +Y P+DWPYQ+AR LF EP+V D +
Sbjct: 240 GIGPKVALALIREHKTLEKVVESVTKSGKYTFPDDWPYQDARLLFLEPDVRPADAPECDF 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
W+ PD +GL+ FLV E GFN DRV +++ S Q RLE FFK
Sbjct: 300 HWNGPDVDGLVKFLVEEKGFNEDRVRSGAARLQKNLKSSQQARLEGFFK 348
>gi|121704724|ref|XP_001270625.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119398771|gb|EAW09199.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 401
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/363 (52%), Positives = 258/363 (71%), Gaps = 8/363 (2%)
Query: 7 TKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQ 66
+++ +NAP ++K +++FGRK+AIDASMSIY FLI V R+ + L +E+GE TSHL
Sbjct: 13 ARVIQENAPDAVKSGDIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGETTSHLM 71
Query: 67 GMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 126
GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G E+IEK
Sbjct: 72 GMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGTAEEIEK 131
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
FS+RTV+VT++HN +CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA ASEDMD+L F
Sbjct: 132 FSRRTVRVTREHNAECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCF 191
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
AP LRHL RK P+ E + ++LE L++ QFID+CIL GCDY + I +G T
Sbjct: 192 EAPILLRHLTFSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLGCDYLEPIPKVGPNT 251
Query: 247 ALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWSA 302
ALKLIR+HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V D + KW A
Sbjct: 252 ALKLIREHGSLEKVVEAIESDPKKKYVIPEDWPYQDARELFHHPDVRAADHPECDFKWEA 311
Query: 303 PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---APIKRK 359
PD E L++FLV + GFN DRV +++ + Q RLE FFKPVA T A +KRK
Sbjct: 312 PDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPVAKTDAEKASLKRK 371
Query: 360 EPE 362
E
Sbjct: 372 HDE 374
>gi|406865692|gb|EKD18733.1| DNA-repair protein rad2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 460
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/386 (50%), Positives = 252/386 (65%), Gaps = 21/386 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAI-----------------DASMSIYQFL 43
MGIK L ++ D P + KE + +++FGRK+AI SMSIY FL
Sbjct: 50 MGIKQLFSIIKDECPDAYKEGEIKNHFGRKVAIVRLPSTPSGASSNPLRTRRSMSIYSFL 109
Query: 44 IVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYS 103
I V R+G EMLTNE GE TSHL GMF RT+R+++ G+KPIYVFDG PP LK ELAKR+
Sbjct: 110 IAV-RSGGEMLTNEDGETTSHLMGMFYRTLRIVDNGIKPIYVFDGAPPKLKSGELAKRFQ 168
Query: 104 KRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQ 163
++A AT+ L EA E G ED+EKFS+RTV+VT++HN +C+RLLK MG+P + AP+EAEAQ
Sbjct: 169 RKATATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKCMGIPYIIAPTEAEAQ 228
Query: 164 CAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ 223
CA L ++ +VYA ASEDMD+L F AP LRHL RK P+ E + K+LE L + Q
Sbjct: 229 CAVLARADKVYAAASEDMDTLCFDAPVLLRHLTFSEQRKEPIQEIFLPKVLEGLGMDRAQ 288
Query: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEAR 281
F+DLCIL GCDY D I +G ALK+IR++G+IE + + + +Y IPEDWPY++AR
Sbjct: 289 FVDLCILLGCDYLDPIPKVGPNAALKIIREYGTIEKFVAAVEAGKAKYSIPEDWPYKDAR 348
Query: 282 RLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 340
LF P+V D KW APD +GLI FLV E GF+ DRV +++ S Q
Sbjct: 349 DLFFNPDVTPADHADCDFKWEAPDVDGLIKFLVEEKGFSEDRVRSGATRLQKNLKSSQQA 408
Query: 341 RLESFFKPVANTSAPIKRKEPENTPK 366
RLE FFKP+ T A +K + +N K
Sbjct: 409 RLEGFFKPIPKTEAELKNLKRKNEEK 434
>gi|212544870|ref|XP_002152589.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
gi|210065558|gb|EEA19652.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
Length = 411
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%)
Query: 6 LTKLLADNAPKSMKEQKFESYFGRKIAI--------DASMSIYQFLIVVGRTGTEMLTNE 57
L +++++NAP ++K + +++FGRK+AI SMSIY FLI V R+ + L +E
Sbjct: 14 LYQVISENAPDAVKTGEIKNHFGRKVAIVRINIAEYRISMSIYSFLIAV-RSDGQQLMSE 72
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGE TSHL GMF RT+R+++ G+KP+YVFDG PP +K ELAKR +++ +A + EA E
Sbjct: 73 AGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHEAHEEAKE 132
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+VYA A
Sbjct: 133 TGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAA 192
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
SEDMD+L F AP LRHL RK P++E + K LE L + M QFIDLCIL GCDY +
Sbjct: 193 SEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLGCDYLE 252
Query: 238 SIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDE 293
I +G TALKLIR+HGS+E ++E I +++Y IP+DWPYQEAR LF P+V D+
Sbjct: 253 PIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPDDWPYQEARELFFNPDVRKADD 312
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 353
Q KW +PD EGL+ FLV++ GF+ DRV ++ + Q RLE FFKPVA T
Sbjct: 313 PQCDFKWESPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFFKPVAKTD 372
Query: 354 ---APIKRKEPE 362
A +KRK E
Sbjct: 373 AEKASMKRKHDE 384
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 258/362 (71%), Gaps = 17/362 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++ +APK++ E ++ FGRK+AIDASMSIYQFLI V + E+LTNE+GE
Sbjct: 1 MGIKGLTALISQHAPKAIAEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGELLTNESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PPDLK LAKR+ +R +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKSGVLAKRFERREEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+E+F++R VKVTK+HN++C++LL LMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDMERFTRRQVKVTKEHNEECRKLLGLMGIPVVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E + K LE L + M QFIDLCIL GCDY + I+
Sbjct: 181 MDTLTFNAPILYRHLTFSEAKKQPISEINLQKALEGLEMNMSQFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENIN----------------RERYQIPEDWPYQEARRLF 284
GIG ++ALKL+R +G + ++E++ + Q+P++WP++EA+++F
Sbjct: 241 GIGPKSALKLVRDYGDLGAVIEHLREKTAAKEEAAEEGKKKKGGIQVPDEWPWEEAKKVF 300
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
++P+V+ E++ ++W APD +GL+ FLV+E GFN +RV K EK+ N QGRL+
Sbjct: 301 EQPDVIP-AEKVDLEWKAPDVDGLVQFLVTEKGFNEERVRKGAEKLAKYLNAKQQGRLDG 359
Query: 345 FF 346
FF
Sbjct: 360 FF 361
>gi|344233741|gb|EGV65611.1| PIN domain-like protein [Candida tenuis ATCC 10573]
Length = 376
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 259/379 (68%), Gaps = 9/379 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL L+ D++P ++KE + ++ FGRKIAIDASM +YQ+LI V + + LTN+ GE
Sbjct: 1 MGVKGLNALIKDHSPGAIKEFQLKNLFGRKIAIDASMCLYQYLIAVRQGDGQNLTNDKGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL GMF RT+R++E G+KP+YVFDG+PP LK EL KRY ++ +A + +A E G+
Sbjct: 61 ITSHLSGMFYRTLRMVENGIKPVYVFDGKPPVLKGGELEKRYLRKEEAIKKMEDAKEEGS 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDI KF KR V+V+++HND+ K+LL+LMG+P + AP EAEAQCA L + G+V+A ASED
Sbjct: 121 AEDILKFEKRMVRVSREHNDEAKKLLELMGIPYINAPCEAEAQCAELARGGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD++ + P LRHL +RKIP+ + + +E + FIDLCIL GCDYC++I+
Sbjct: 181 MDTICYSPPYLLRHLTFSEARKIPIDQIDCKTAIEGFEMDKKTFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGSI+ I++ IN + +Y++PE+WPY+EAR LF P+ +T +L
Sbjct: 241 GVGPVTAFKLIKEHGSIDNIVKFINDNPDKTKYKLPENWPYEEARELFLNPD-ITPCSEL 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
KW PD EG+I F+V++ GF+ DRV EK+K QGRL+ FFK V
Sbjct: 300 SFKWKEPDLEGMIEFMVNDKGFSEDRVKSGYEKLKKGLKTGVQGRLDGFFKVVPKKEDDK 359
Query: 357 KRKEPENTPKATTNKKSKA 375
KRK + TN K KA
Sbjct: 360 KRKAKD----TKTNGKKKA 374
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/362 (51%), Positives = 261/362 (72%), Gaps = 5/362 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++D AP ++KE + ++YFGRK+AIDASMS+YQFLI V + + L E+GE
Sbjct: 1 MGIKGLTALISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A + E + +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEEEQKDVAD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++ ++R V+ T+QHN++ + LLKLMG+P V APSEAEAQCA L ++G+VYA SED
Sbjct: 121 VEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P L+HL +K+PV + ++ K LE L ++M QFIDLCIL GCDY D I+
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLQMSMPQFIDLCILLGCDYLDPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
GIG +TALKLIR+H ++E ++E++ E QIPE WP+QEAR++F+ P+V ++ L
Sbjct: 241 GIGPKTALKLIREHKTLENVVEHLKEEGKKSVQIPEHWPFQEARKIFENPDVQKGKD-LD 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
+KW APD E ++ FL + GF+ DRV K +K++ + ++ QGRL+ FF V SAP K
Sbjct: 300 LKWEAPDVEAMVKFLCQDKGFSEDRVRKGCDKLQKSLSQKQQGRLDGFFT-VKPGSAPPK 358
Query: 358 RK 359
RK
Sbjct: 359 RK 360
>gi|358333862|dbj|GAA32436.2| flap endonuclease-1 [Clonorchis sinensis]
Length = 350
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/352 (54%), Positives = 255/352 (72%), Gaps = 9/352 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIYQFLI V + G+ ++ +E GE TSHL GMF RTIR++E G+KP+YVF+G+PP +K
Sbjct: 1 MSIYQFLIAVRQEGSTLMNSE-GESTSHLMGMFYRTIRMIENGIKPVYVFEGKPPSMKAG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR +R +++ +LA+A E + E IEKFSKR VKVT QHNDDCK LL+LMGVP ++A
Sbjct: 60 ELAKRTERRIESSRELAKAEEEEDLEAIEKFSKRLVKVTPQHNDDCKELLRLMGVPYIKA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P EAEAQCAAL K+G+VYAV +EDMD+L FG P LRHL +RK+P+ EF + +L
Sbjct: 120 PGEAEAQCAALAKAGKVYAVGTEDMDALAFGCPVLLRHLTFSEARKLPIQEFNLPSVLAG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP 276
L L+MDQF+DLCIL GCDY D+IRGIG + A+ L+R+H SIE +L+NI+ +Y +PE+WP
Sbjct: 180 LELSMDQFVDLCILLGCDYVDTIRGIGPKKAIDLLRKHKSIEEVLKNIDHSKYPVPEEWP 239
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
Y+EA++LF PE + D E+++IKWS PDEEGL+ FL ++GFN +RV +K+ AKN
Sbjct: 240 YEEAKKLFVTPE-IEDPEKIEIKWSEPDEEGLVAFLCHKHGFNEERVRNGAKKLMKAKNT 298
Query: 337 SSQGRLESFFKPVANTSAPIKRKEPENTPKATTN-----KKSKAGGGGGRKR 383
++QGR++SFF+ A S P +P T N +KS G G G KR
Sbjct: 299 NTQGRIDSFFQ--ALPSKPSVNSKPTVATSKTGNDTAKKRKSVGGSGTGSKR 348
>gi|336365482|gb|EGN93832.1| hypothetical protein SERLA73DRAFT_188945 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378041|gb|EGO19200.1| hypothetical protein SERLADRAFT_479560 [Serpula lacrymans var.
lacrymans S7.9]
Length = 407
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/369 (51%), Positives = 262/369 (71%), Gaps = 19/369 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+A+ APK++ E ++ F RK+AIDASMSIYQFLI V + EMLTN+AGE
Sbjct: 1 MGIKGLTGLIAEYAPKAITEHDIKTLFSRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP+YVFDG+PP++K L+KR+ KR +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPVYVFDGKPPEMKAGVLSKRFEKREEAKEEGEEAKEIGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++KFS+RTVKVT++HN++C+RLLKLMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDMDKFSRRTVKVTREHNEECRRLLKLMGIPVVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP LRHL +RK P+ E + + LE L + M F DLCIL GCDY + I+
Sbjct: 181 MDTLTFSAPILLRHLTFSEARKAPISEINLQRALEGLEMDMSLFTDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENIN----------------RERYQIPEDWPYQEARRLF 284
G+G ++ALKL+R HG + ++E++ + IPE+WP++EA+++F
Sbjct: 241 GVGPKSALKLVRDHGGLAGVVEHLRGKAAEKAEAGEDGKKKKGGIHIPEEWPWEEAKKIF 300
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
+P+ VT ++++++W PD +GL+ FLV+E GFN +RV K +K++ N QGRL+
Sbjct: 301 VKPD-VTPADEVELEWKNPDIDGLVQFLVTEKGFNEERVRKGADKLQKFLNSKQQGRLDG 359
Query: 345 FF--KPVAN 351
FF KP A+
Sbjct: 360 FFTAKPKAS 368
>gi|402218593|gb|EJT98669.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/401 (48%), Positives = 268/401 (66%), Gaps = 33/401 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT+LL+++APK++++ + ++ FGRK+A+DASMSIYQFLI V + EML N+ GE
Sbjct: 1 MGIKGLTQLLSEHAPKALRDVEMKTLFGRKVAVDASMSIYQFLIAVRQKDGEMLMNDQGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LK LAKR+ ++ +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRMVENGIKPAYVFDGRPPELKSGVLAKRFERKEEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDI + + RTV+VT++HN++C++LL LMG+P V APSEAEAQCA L + G+V+A SED
Sbjct: 121 VEDIARLAGRTVRVTREHNEECQKLLALMGIPCVVAPSEAEAQCAELARGGKVFAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL ++K+P+ E + LE L + M +FIDLCIL GCDY + I+
Sbjct: 181 MDTLTFNTPILLRHLTFSEAKKMPISEISLELALEGLEMNMSKFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI-----------------NRERYQIPEDWPYQEARRL 283
GIG ++ALKL+R+H ++E ILE + R Q+P+DWP+++A+ L
Sbjct: 241 GIGPKSALKLVREHDNMEEILETLRGKMVKKESKGDGTPPKKRGGVQVPDDWPWEKAKEL 300
Query: 284 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 343
F P VT ++L ++W PD +GLI FLV + GFN DRV K EK+ N QGRL+
Sbjct: 301 FIHP-AVTPADELTLEWKDPDVDGLIEFLVRQKGFNEDRVRKGAEKLSKMLNSKQQGRLD 359
Query: 344 SFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
FFK + PK++ +KK A GG G KRK
Sbjct: 360 GFFKAM---------------PKSSPDKKEDAKGGKGPKRK 385
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/358 (50%), Positives = 258/358 (72%), Gaps = 4/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++D AP +++E + ++YFGRK+AIDASMS+YQFLI V + + L E+GE
Sbjct: 1 MGIKGLTALISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A + E + +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLKKRFGRREEAREQEEEQKDVAD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++ ++R V+ T+QHN++ ++LLKLMG+P V APSEAEAQCA L ++G+VYA SED
Sbjct: 121 VEKMDQLARRQVRPTRQHNEEVRQLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P L+HL +K+PV + ++ K LE L + M QFIDLCIL GCDY D I+
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLQMDMPQFIDLCILLGCDYLDPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
GIG +TALKLIR+H S+E ++E++ E QIPE WP+QEAR++F+ P+V ++ L
Sbjct: 241 GIGPKTALKLIREHKSLENVVEHLKEEAKKSVQIPEHWPFQEARKIFEAPDVQKGKD-LD 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAP 355
+KW APD EG++ FL + GF+ DRV K EK++ + ++ QGRL+ FF + AP
Sbjct: 300 LKWEAPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFTVKSGAPAP 357
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 253/367 (68%), Gaps = 6/367 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ DN P ++KE + ++ FGRK+AIDASMS+Y FL+ V R+ E L ++ GE
Sbjct: 1 MGIKNLAQVIKDNCPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAV-RSNGEQLMSDTGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A D EA E G
Sbjct: 60 TTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQADHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN + +RLLKLMGVP + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNAEAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL RK P+ E + ++LE L + QFIDLCIL GCDY D ++
Sbjct: 180 MDTLTFDSPVLLRHLTFSEQRKEPIQEIFLDRVLEGLEMDQKQFIDLCILLGCDYLDPVK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINR-ERYQIPEDWPYQEARRLFKEPEVV-TDEEQLQI 298
GIG + AL+LI++H ++E ++E I + +Y +PEDWP+ +AR LF EP+V D
Sbjct: 240 GIGPKVALELIKKHKTLENVVEEIKKGSKYTLPEDWPFADARALFLEPDVHKADHPDCDF 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF---KPVANTSAP 355
KW +PD EGL+ FLV E GF+ DRV ++ S Q RLE FF + A
Sbjct: 300 KWESPDVEGLVKFLVEEKGFSEDRVRSGAARLSKNMKSSQQARLEGFFKVKEKTEEEKAS 359
Query: 356 IKRKEPE 362
+KRK E
Sbjct: 360 LKRKNEE 366
>gi|366994432|ref|XP_003676980.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
gi|342302848|emb|CCC70625.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
Length = 379
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/356 (51%), Positives = 257/356 (72%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT ++++NAP ++++ + +++FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLTAIISENAPLAIRKSEIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL+KR S+R + LAEAV+
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPTLKSHELSKRTSRREETEKKLAEAVDQAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +R VKV+K+HND+ K+LL+LMG+P V AP EAE+QCA L K G+VYA ASED
Sbjct: 121 KM---KQERRLVKVSKEHNDEAKKLLELMGIPYVNAPGEAESQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E ++L+ L+LT++QFIDL I+ GCDYCD+IR
Sbjct: 178 MDTLCYRTPYLLRHLTFSEAKKEPIQEINTEQVLQGLDLTLEQFIDLGIMLGCDYCDNIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRE----RYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKLI++HGS+E I+E I + ++++PE+WPY+EAR LF +P+V+ D +++
Sbjct: 238 GVGPVTALKLIKEHGSLEKIVEFIESDEGNKKWKVPENWPYKEARELFLKPDVI-DGDEI 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KW P E+ LI++L E FN +RV I++++ QGRL+ FFK V T
Sbjct: 297 TLKWQPPKEQELIDYLCGEKLFNEERVKSGIKRLQKGLKSGVQGRLDGFFKVVPKT 352
>gi|350287839|gb|EGZ69075.1| DNA-repair protein rad2, partial [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 246/350 (70%), Gaps = 7/350 (2%)
Query: 9 LLADNAPKSMKEQKFESYFGRKIAID--ASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQ 66
++ D AP ++KE + ++ FGRK+AI SMSIY FLI V R+ + L NEAGE TSHL
Sbjct: 3 VIKDEAPDAIKEGEIKNQFGRKVAIKKKTSMSIYSFLIAV-RSDGQQLMNEAGETTSHLM 61
Query: 67 GMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 126
GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L EA E G ED+EK
Sbjct: 62 GMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEK 121
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
FS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+VYA ASEDMD+L F
Sbjct: 122 FSRRTVRVTREHNAECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCF 181
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
AP LRHL RK P+ E + K+LE L + QFIDLCIL GCDY D I +G T
Sbjct: 182 NAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDYLDPIPKVGPST 241
Query: 247 ALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWSA 302
ALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V D+ KW
Sbjct: 242 ALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARALFFEPDVRPADDPLCDFKWDK 301
Query: 303 PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK + T
Sbjct: 302 PDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKILPKT 351
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 260/346 (75%), Gaps = 2/346 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L+K++ D++P S++ ++F+ YFGRK+A+DASM +YQFLI V + G+++ T E+GE
Sbjct: 1 MGVKDLSKVIGDHSPGSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQT-ESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PP +K EL KR +RA+A ++AVE G+
Sbjct: 60 TTSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRIERRAEAEKQRSDAVELGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + KF++R VKVTK+ N++ KRL+ LMG+PV++AP EAEAQCAAL ++G+V+A SED
Sbjct: 120 EASVNKFARRLVKVTKEQNEEAKRLVTLMGIPVLDAPCEAEAQCAALARAGKVFATVSED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LR ++ ++K+PV E + ++L++ + M+QFIDLCIL GCDY +IR
Sbjct: 180 MDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMEQFIDLCILLGCDYVSTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A +LI++H IE +L+ I++ +Y IP++W Y+EARRLF EP+V+ D E +++ W
Sbjct: 240 GIGPKKAFELIKKHECIENVLKIIDQTKYAIPKNWQYKEARRLFLEPDVM-DCENVELVW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
PD EG++ FL E FN DRV ++ +++ + + Q R++SFF
Sbjct: 299 KEPDVEGIVQFLCGEKSFNEDRVRGSLTRMQKGRQAAQQIRIDSFF 344
>gi|301117906|ref|XP_002906681.1| flap endonuclease 1 [Phytophthora infestans T30-4]
gi|317374909|sp|D0MY34.1|FEN1_PHYIT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|262108030|gb|EEY66082.1| flap endonuclease 1 [Phytophthora infestans T30-4]
Length = 389
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/366 (52%), Positives = 255/366 (69%), Gaps = 16/366 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKE-QKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLT 55
MGIKGL KLL + AP +KE +K + G +AIDASM++YQFLI + G ++ LT
Sbjct: 1 MGIKGLMKLLQEEAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAIRSADGGGPSQALT 60
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
N GEVTSHLQGMF+RTIR++E G+KP+YVFDG+PP +K ELAKR +R +A L EA
Sbjct: 61 NADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALEEA 120
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E GN EDI++F+KR V+ T QHN+DCK LL+LMGVP + AP EAEA CAAL K G+VYA
Sbjct: 121 TEKGNAEDIDRFNKRLVRATPQHNEDCKELLRLMGVPHITAPCEAEASCAALAKGGRVYA 180
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
+EDMD+LTFG P R L ++KIP++E + + L+EL +T +QF+DLCIL GCDY
Sbjct: 181 AGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQELEMTHEQFVDLCILCGCDY 240
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQ---IPEDW-----PYQEARRLFKEP 287
CDSIRG+G + A I++H SIE LE + + + + IP++W Y+ AR +F +P
Sbjct: 241 CDSIRGVGPKKAYAGIKEHKSIENFLEVLQKNKSKGVVIPDEWLGENPIYKNAREMFIKP 300
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
EVV D ++ +IKW P E L++FLV ++GF DRV AI ++K +K+ SQ RL+SFF
Sbjct: 301 EVV-DAKETEIKWRDPQETELVDFLVKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSFFT 359
Query: 348 --PVAN 351
P AN
Sbjct: 360 VMPSAN 365
>gi|390332710|ref|XP_001197560.2| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like
[Strongylocentrotus purpuratus]
Length = 384
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/368 (51%), Positives = 257/368 (69%), Gaps = 10/368 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L++L+AD AP +++E +F+SYFGRK+AIDASM IYQFLI V + G+ +LTNE GE
Sbjct: 1 MGIHNLSRLIADCAPGAVRENEFKSYFGRKVAIDASMCIYQFLIAVRQDGS-VLTNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E G+KP YVFDG+PP++K EL KR RA+A +L +A E G+
Sbjct: 60 TTSHLMGIFYRTIRMIEHGLKPCYVFDGKPPEMKSGELTKRKEMRAEAEKELEKAKEQGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E++ KF KR VKVTKQHN++C+ LLKLMGVP V+AP EAEAQC L K G++Y V +ED
Sbjct: 120 QENMNKFEKRLVKVTKQHNEECQHLLKLMGVPYVKAPGEAEAQCCELVKKGKLYGVGTED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG LRHL +RK+P+ EF ++LE L L QFIDLCIL GCDYC +I+
Sbjct: 180 MDALTFGGNVLLRHLTVSEARKMPIQEFNYQRVLEGLGLNRQQFIDLCILMGCDYCGTIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE------ 294
GIG + A +L++ HGSIETILE I++ +Y PEDW Y+EAR LF P+V EE
Sbjct: 240 GIGMKRAFELMKTHGSIETILEKIDQNKYPPPEDWLYKEARELFLSPDVTPGEEFDVRFX 299
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
L I + + ++ F++ ++ DR+ +K+ A+ ++QGRL+SFF + S
Sbjct: 300 FLCIIXNHXNXNSMVXFVIYM--YSEDRMRNGCKKLVKARTGATQGRLDSFFTLKPSASP 357
Query: 355 PIKRK-EP 361
KRK EP
Sbjct: 358 AGKRKSEP 365
>gi|317374948|sp|Q0UZR3.3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 396
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 258/367 (70%), Gaps = 9/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ +++P ++K + ++ FGRK+AIDASMSIY FLI V R+ + L +E GE
Sbjct: 1 MGIKHLYQLIQEHSPDAIKTGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A EA E G
Sbjct: 60 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAHAAAEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L + G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECRRLLKLMGIPFIIAPTEAEAQCATLARGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ--FIDLCILSGCDYCDS 238
MD+LTF P LRHL RK P++E + K+LE L + +Q FIDLCIL GCDY D
Sbjct: 180 MDTLTFNTPILLRHLTFSEQRKEPILEIHLDKVLEGLEMEREQPQFIDLCILLGCDYLDP 239
Query: 239 IRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVV-TDEEQ 295
I+GIG TALKLIR H ++E ++ +I ++++ +PEDWP+ +AR+LF EP+V D +
Sbjct: 240 IKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTLPEDWPFADARQLFLEPDVCPADAPE 299
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT--- 352
KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKPV T
Sbjct: 300 CDFKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFFKPVERTPEE 359
Query: 353 SAPIKRK 359
A +KRK
Sbjct: 360 KASLKRK 366
>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/347 (54%), Positives = 257/347 (74%), Gaps = 5/347 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIYQFLI V R G ++L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK
Sbjct: 1 MSIYQFLIAV-RQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR +RA+A L +A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++A
Sbjct: 60 ELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
PSEAEA CAAL K+G+VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+E
Sbjct: 120 PSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQE 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP 276
L L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W
Sbjct: 180 LGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWL 239
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
++EA +LF EPEV+ D E +++KWS P+EE LI F+ E F+ +R+ ++++ ++
Sbjct: 240 HKEAHQLFLEPEVL-DPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQG 298
Query: 337 SSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKR 383
S+QGRL+ FFK V + + KRKEPE PK +T KK+K G G KR
Sbjct: 299 STQGRLDDFFK-VTGSLSSAKRKEPE--PKGSTKKKAKTGAAGKFKR 342
>gi|327350064|gb|EGE78921.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ATCC 18188]
Length = 402
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 258/374 (68%), Gaps = 15/374 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAI-------DASMSIYQFLIVVGRTGTEM 53
MGIK L +++ +NAP ++K + +++FGRK+AI SMSIY FL+ V R+ +
Sbjct: 1 MGIKHLYQVIQENAPDAVKAGEIKNHFGRKVAILRNHPYVHGSMSIYSFLVAV-RSDGQQ 59
Query: 54 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
L +E GE TSHL GMF RT+R++E G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 60 LMSETGETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 119
Query: 114 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 120 EAKEVGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKV 179
Query: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 180 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 239
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 289
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 240 DYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDARELFFDPDVR 299
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
D KW APD EGL+ FLV E F+ DRV +++ + Q RLE FFKP+
Sbjct: 300 KADHPDCNFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPI 359
Query: 350 ANTS---APIKRKE 360
A T A +KRK
Sbjct: 360 AKTEQEKATLKRKH 373
>gi|261193829|ref|XP_002623320.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239588925|gb|EEQ71568.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239613756|gb|EEQ90743.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ER-3]
Length = 406
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/378 (50%), Positives = 259/378 (68%), Gaps = 19/378 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAID-----------ASMSIYQFLIVVGRT 49
MGIK L +++ +NAP ++K + +++FGRK+AI ASMSIY FL+ V R+
Sbjct: 1 MGIKHLYQVIQENAPDAVKAGEIKNHFGRKVAIVSTFSPVSSSKVASMSIYSFLVAV-RS 59
Query: 50 GTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADAT 109
+ L +E GE TSHL GMF RT+R++E G+KP+YVFDG PP LK ELAKR+ ++++A
Sbjct: 60 DGQQLMSETGETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAA 119
Query: 110 DDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCK 169
+ EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP + AP+EAEAQCA L +
Sbjct: 120 EAHEEAKEVGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLAR 179
Query: 170 SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 229
+G+VYA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCI
Sbjct: 180 AGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCI 239
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKE 286
L GCDY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +
Sbjct: 240 LLGCDYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDARELFFD 299
Query: 287 PEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
P+V D KW APD EGL+ FLV E F+ DRV +++ + Q RLE F
Sbjct: 300 PDVRKADHPDCNFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGF 359
Query: 346 FKPVANTS---APIKRKE 360
FKP+A T A +KRK
Sbjct: 360 FKPIAKTEQEKATLKRKH 377
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/378 (49%), Positives = 266/378 (70%), Gaps = 8/378 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+KLLA APKSMKE K + Y GR IAIDAS+ +YQF+ V T + +E GE
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F RTI+L+E+G+KP+YVFDG+PP++K EL KR A + L +A+E G+
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE +K KRT ++TK+ +D+ K+LL+LMG+P +EA EAE CAAL K+G+ YA A+ED
Sbjct: 121 KEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGSCAALVKAGKCYATATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LT G+ +R ++K P+ E+ ++ ILEE TM+QFIDLCIL GCDYC++I+
Sbjct: 181 MDALTLGSEHVVRKFSASDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G TA +LI+Q+ SIE IL++++ ++Y++PE+W Y+EAR LF P+V D +++W
Sbjct: 241 GVGPITAFELIQQYKSIENILQHLS-DKYKVPENWKYKEARELFLHPDVA-DFSDYKLEW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PVANTSAP- 355
+ DEEG+ +LV+E FN +RVTK IEK+K K+K +QGRL+SFF P++ + A
Sbjct: 299 NKIDEEGIKKYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFNVKKVPLSKSEAAS 358
Query: 356 -IKRKEPENTPKATTNKK 372
IKRK+P K + KK
Sbjct: 359 GIKRKKPTTKAKESRKKK 376
>gi|320582300|gb|EFW96517.1| 5' to 3' exonuclease, 5' flap endonuclease [Ogataea parapolymorpha
DL-1]
Length = 374
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/367 (50%), Positives = 253/367 (68%), Gaps = 5/367 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL L+A+NAP++++ + +S FGRKIAIDASM +YQFLI V + LTNEAG
Sbjct: 1 MGIKGLNALVAENAPRAIRSSEMKSLFGRKIAIDASMCLYQFLIAVRQQDGNQLTNEAGG 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++ G+KP YVFDG+PP LK EL KR +R +A E E G
Sbjct: 61 TTSHLMGFFYRTIRMVGNGIKPCYVFDGKPPVLKGGELEKRLKRREEAEQKALELKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++++F KR VKVT++ N+ + LL+LMG+P V AP EAEAQCA L + G+VYA ASED
Sbjct: 121 VEELQRFEKRQVKVTREQNEQAQHLLRLMGIPYVIAPCEAEAQCAELARKGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P FLR++ S+K+ V EF + +LE + ++ F+DLCIL GCDYC++I+
Sbjct: 181 MDTLCYQPPFFLRNVTAAESKKLKVDEFTTSAVLEGFGMDINTFVDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
GIG TA KLI++HGSIE I+E I + +Y++PE+WPY EAR LF PEV+ ++ +
Sbjct: 241 GIGPVTAFKLIKEHGSIEKIIEFIENDPKCKYKVPENWPYNEARELFLNPEVLNGDD-ID 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
+KW+ PD +GLI F+V ENGFN R+ +EK+K QGRL+ FFK V+ + K
Sbjct: 300 LKWTDPDLDGLIEFMVKENGFNEQRIRDGVEKLKKGLKGGVQGRLDGFFK-VSVKAETKK 358
Query: 358 RKEPENT 364
R E ++T
Sbjct: 359 RTETQDT 365
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 249/360 (69%), Gaps = 12/360 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++ ++ P +++ +YFGRK+AIDASMS+YQFLI V + LTNE GE
Sbjct: 1 MGIKGLNAIITEHVPSAVRRSDIRTYFGRKVAIDASMSLYQFLIAVRQQDGGQLTNENGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR +RA+ LAEA +
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRSERRAETEKQLAEAQDIAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +R VKVTK+HN++ K+LL LMG+P + APSEAEAQCA L K+G VYA ASED
Sbjct: 121 KI---KHERRLVKVTKEHNEEAKKLLGLMGIPYITAPSEAEAQCAELAKAGVVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E +V +L L+LT++QFIDL I+ GCDYCDSIR
Sbjct: 178 MDTLCYRVPHLLRHLTFSEAKKEPIHELDVEVVLRGLDLTIEQFIDLGIMLGCDYCDSIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRE--------RYQIPEDWPYQEARRLFKEPEVVTD 292
G+G TALKLI++ GS+E I+E+ + E +Y+IPE+WPY+EAR LF P+V+
Sbjct: 238 GVGPVTALKLIKEFGSLEKIVEHFSEENEQKGGKSKYKIPENWPYKEARELFTNPDVIQG 297
Query: 293 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
++ +++KW+ P EE LI FL +E F+ DRV I ++K A +QGRL+ FFK V T
Sbjct: 298 KD-VELKWTPPKEEELIEFLCTEKMFSEDRVKSGIARLKKALKSGTQGRLDGFFKAVPKT 356
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/387 (49%), Positives = 270/387 (69%), Gaps = 12/387 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEM-LTNE 57
MGI GL+KLL D +P +++E++ ++YFGR+IAIDASM+IYQF+I + + G M LTNE
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL +R + +A A E
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
GN E +EK SKRTV+V+++ ++ K+LL+LMG+PVV+APSEAEAQCA L K + +AVA
Sbjct: 121 EGNDELMEKMSKRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTFGAP LRHL ++K P+ EF + +IL LTM QFIDLCIL GCDY
Sbjct: 181 TEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVP 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I GIG Q A + I++HG IET+L++++ R+ +PE + Y+EAR+ F PE VT E+++
Sbjct: 241 KIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEARQFFLTPE-VTPAEEIE 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF---KPVA---- 350
I++ PDEEGL+ FLV E FN DRV K I++++ A ++ +QGRL+ FF +PV
Sbjct: 300 IQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALSRKTQGRLDQFFTITRPVTKPNN 359
Query: 351 -NTSAPIKRKEPENTPKATTNKKSKAG 376
+ A +KR T +K +G
Sbjct: 360 CDAKAGVKRGHSAIALSGTLQQKGSSG 386
>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 395
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 255/365 (69%), Gaps = 8/365 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ ++ P+++K+ + ++ FGRK+AI SMSIY FLI V R+ + L +E GE
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAICRSMSIYSFLIAV-RSDGQQLMSETGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA E G
Sbjct: 60 TTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL + G+VYA ASED
Sbjct: 120 AEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL RK P++E + K+LE L + QFIDLCIL GCDY D I+
Sbjct: 180 MDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDPIK 239
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V D+ +
Sbjct: 240 GIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVRPADDPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+ T+
Sbjct: 300 DFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPIEKTAEQK 359
Query: 354 APIKR 358
A +KR
Sbjct: 360 ATLKR 364
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/376 (49%), Positives = 258/376 (68%), Gaps = 8/376 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A + G
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+VYA ASED
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLELMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GCDYC+SI+
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
GIG TA KLI++HGS++ I+E I N+ +Y +PE+WPY EAR+LF PE VT+ ++ +
Sbjct: 241 GIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPYDEARQLFMNPE-VTNANEISL 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 358
KW PD +GLI F+V + GF+ DR+ EK+K QGRL+ FFK V N
Sbjct: 300 KWKEPDVDGLIEFMVRQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKNDD----- 354
Query: 359 KEPENTPKATTNKKSK 374
K+ + PK T + K K
Sbjct: 355 KKRKADPKETKSSKKK 370
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/375 (52%), Positives = 261/375 (69%), Gaps = 12/375 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLL D AP +++Q+ ++YFGRKIAIDASM+IYQFL V R G + L NEAGE
Sbjct: 1 MGIKGLTKLLGDYAPSCVQQQELKNYFGRKIAIDASMNIYQFLSAV-RAGADNLRNEAGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RT RL+E G+ P YVFDG+PP+LK EL+KR R A A A E G+
Sbjct: 60 VTSHLSGLFYRTTRLMELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAALAKEEGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E EKF++R KV+ + + KRLL+LMG+P++EAP EAEAQCA+LCK VYA ASED
Sbjct: 120 VEAYEKFNRRVNKVSPEVIEQSKRLLRLMGIPILEAPEEAEAQCASLCKENLVYATASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSS-----RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
MDSLTFG+ + +R L ++ + I +EF + K L ELN + +QFIDLCIL GCDY
Sbjct: 180 MDSLTFGSSKVIRQLWVGATSTAEKKGIHPLEFSLEKALLELNFSYEQFIDLCILCGCDY 239
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
DSIRGIG A LIR+HG++E LE I +E++ +P+ +PY +AR LF +P+V +
Sbjct: 240 LDSIRGIGPYKAFNLIRKHGNLEGALEEI-KEKHDVPDHFPYDKARELFLKPKVHSP-SS 297
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF----KPVAN 351
+ ++WS PDE+G+I LV E+ FN D + KA++++ +K+ SSQGRLE+FF K +
Sbjct: 298 VVLEWSPPDEQGIIQMLVHESNFNEDNIRKALKRLAHSKHASSQGRLENFFSIKPKEQQD 357
Query: 352 TSAPIKRKEPENTPK 366
S KRK P +PK
Sbjct: 358 PSTDKKRKAPVFSPK 372
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/387 (49%), Positives = 270/387 (69%), Gaps = 12/387 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEM-LTNE 57
MGI GL+KLL D +P +++E++ ++YFGR+IAIDASM+IYQF+I + + G M LTNE
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL +R + +A A E
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
GN E +EK SKRTV+V+++ ++ K+LL+LMG+PVV+APSEAEAQCA L K + +AVA
Sbjct: 121 EGNDELMEKMSKRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKKKAWAVA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTFGAP LRHL ++K P+ EF + +IL LTM QFIDLCIL GCDY
Sbjct: 181 TEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVP 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I GIG Q A + I++HG IET+L++++ R+ +PE + Y+EAR+ F +PE VT E+++
Sbjct: 241 KIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEARQFFLKPE-VTPAEEIE 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF---KPVA---- 350
I++ PDEEGL+ FLV E FN DRV K I++++ A + +QGRL+ FF +PV
Sbjct: 300 IQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFFTITRPVTKPNT 359
Query: 351 -NTSAPIKRKEPENTPKATTNKKSKAG 376
+ A +KR T +K +G
Sbjct: 360 CDAKAGVKRGHSAIALSGTLQQKGSSG 386
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/378 (49%), Positives = 266/378 (70%), Gaps = 8/378 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+KLLA APKSMKE K + Y GR IAIDAS+ +YQF+ V T + +E GE
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F RTI+L+E+G+KP+YVFDG+PP++K EL KR A + L +A+E G+
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE +K KRT ++TK+ +D+ K+LL+LMG+P VEA EAE CAAL K+G+ YA A+ED
Sbjct: 121 KEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCVEANCEAEGTCAALVKAGKCYATATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LT G+ +R ++K P+ E+ ++ ILEE +M+QFIDLCIL GCDYCD+I+
Sbjct: 181 MDALTLGSEYVVRKFSASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLGCDYCDTIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G TA +LI+Q+ SIE +L++++ ++Y++PE+W Y+EAR LF P+V D +++W
Sbjct: 241 GVGPITAFELIQQYKSIENVLKHLS-DKYKVPENWKYKEARELFLHPDVA-DFSDYKLEW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PVANTSAP- 355
+ DEEG+ +LV+E FN +RVTK IEK+K K+K +QGRL+SFF P++ + A
Sbjct: 299 NKLDEEGIKQYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFSVKKVPLSKSEAAS 358
Query: 356 -IKRKEPENTPKATTNKK 372
+KRK+P K + KK
Sbjct: 359 GVKRKKPTTKAKESRKKK 376
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/387 (49%), Positives = 269/387 (69%), Gaps = 12/387 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEM-LTNE 57
MGI GL+KLL D +P +++E++ ++YFGR+IAIDASM+IYQF+I + + G M LTNE
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL +R + +A A E
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
GN E +EK SKRTV+V+++ ++ K+LL+LMG+PVV+APSEAEAQCA L K + +AVA
Sbjct: 121 EGNDELMEKMSKRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTFGAP LRHL ++K P+ EF + +IL LTM QFIDLCIL GCDY
Sbjct: 181 TEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDYVP 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I GIG Q A + I++HG IET+L++++ R+ +PE + Y+EAR+ F +PE VT E+++
Sbjct: 241 KISGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEARQFFLKPE-VTPAEEIE 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF---KPVA---- 350
I++ PDEEGL+ FLV E FN DRV K I++++ A + +QGRL+ F +PV
Sbjct: 300 IQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFLTITRPVTKPNT 359
Query: 351 -NTSAPIKRKEPENTPKATTNKKSKAG 376
+ A +KR T +K +G
Sbjct: 360 CDAKAGVKRSHSAIALSGTLQQKGSSG 386
>gi|150866777|ref|XP_001386488.2| hypothetical protein PICST_33791 [Scheffersomyces stipitis CBS
6054]
gi|317376214|sp|A3M056.2|FEN1_PICST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|149388033|gb|ABN68459.2| Exodeoxyribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 381
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 250/353 (70%), Gaps = 4/353 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE+GE
Sbjct: 1 MGVKGLNQLIKEHSPGAFKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E +KP+YVFDG+PP LK EL KR KR +A + + G
Sbjct: 61 TTSHLSGMFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQIDSIKDTGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ KF KR V+V+++ ND+ K+LL+LMG+P V AP EAEAQCA L ++G+V+A ASED
Sbjct: 121 VAEVMKFEKRLVRVSREQNDEAKKLLELMGIPYVNAPCEAEAQCAELARTGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + ++ + L +T QFID+CIL GCDYC++I+
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPINQITYSEAIAGLEMTKPQFIDMCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
G+G TA KLI++HGS+E I+E+IN +Y++PE+WPY EAR+LF +PE VT E++
Sbjct: 241 GVGPVTAYKLIKEHGSLEKIIEHINSNPTSKYKVPENWPYDEARQLFMDPE-VTKGEEVT 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
+KW PD EGLI ++V E GF+ DR+ EK+K QGRL+ FF VA
Sbjct: 300 LKWKEPDVEGLIQYMVREKGFSEDRIRSGAEKLKKGLKTGVQGRLDGFFSVVA 352
>gi|348688657|gb|EGZ28471.1| hypothetical protein PHYSODRAFT_294028 [Phytophthora sojae]
Length = 390
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/376 (51%), Positives = 257/376 (68%), Gaps = 17/376 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKE-QKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLT 55
MGIKGL KLL + AP +KE +K + G +AIDASM++YQFLI + G ++ LT
Sbjct: 1 MGIKGLMKLLQEEAPSCIKEVEKMSALAGHAVAIDASMALYQFLIAIRSADGGGPSQALT 60
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
N GEVTSHLQGMF+RTIR++E G+KP+YVFDG+PP +K ELAKR +R +A L EA
Sbjct: 61 NADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALEEA 120
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E GN EDI++F+KR V+ T QHN+DCK LL+LMGVP + AP EAEA CA L K G+VYA
Sbjct: 121 TEKGNAEDIDRFNKRLVRATPQHNEDCKELLRLMGVPHITAPCEAEASCAELAKGGRVYA 180
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
+EDMD+LTFG P R L ++KIP++E + + L+EL LT +QF+DLCIL GCDY
Sbjct: 181 AGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQELELTQEQFVDLCILCGCDY 240
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQ---IPEDW-----PYQEARRLFKEP 287
CDSIRG+G + A I++H +IE LE + + + + IP++W Y+ AR +F +P
Sbjct: 241 CDSIRGVGPKKAFAGIKEHKNIENFLEALQKNKSKGVVIPDEWLGENPIYKSAREMFIKP 300
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
EVV +E ++KW P E L++FL ++GF DRV AI ++K +K+ SQ RL+SFF
Sbjct: 301 EVVNAKEA-ELKWRDPQETELLDFLCKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSFFT 359
Query: 348 --PVANTSAPIKRKEP 361
P A SA KRK P
Sbjct: 360 VLPSAGGSAK-KRKAP 374
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/378 (49%), Positives = 266/378 (70%), Gaps = 8/378 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+KLLA APKSMKE K + Y GR IAIDAS+ +YQF+ V T + +E GE
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F RTI+L+E+G+KPIYVFDG+PP++K EL KR A + L +A+E G+
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE +K KRT ++TK+ +D+ K+LL+LMG+P +EA EAE CAAL K+G+ YA A+ED
Sbjct: 121 KEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGTCAALVKAGKCYATATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LT G+ +R ++K P+ E+ ++ ILEE TM+QFIDLCIL GCDYC++I+
Sbjct: 181 MDALTLGSEHVVRKFSANDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G TA +LI+Q+ SIE IL++++ ++Y++PE+W Y+EAR LF P+V D +++W
Sbjct: 241 GVGPITAFELIQQYKSIENILQHLS-DKYKVPENWKYKEARELFLHPDVA-DFSDYKLEW 298
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PVANTSAP- 355
+ DEEG+ +LV+E FN +RV+K IEK+K K+K +QGRL+SFF P++ + A
Sbjct: 299 NKIDEEGIKKYLVTEKHFNEERVSKGIEKLKNVKSKKAQGRLDSFFNVKKVPLSKSEAAS 358
Query: 356 -IKRKEPENTPKATTNKK 372
+KRK+P K + KK
Sbjct: 359 GVKRKKPTTKAKESRKKK 376
>gi|357624246|gb|EHJ75100.1| flap endonuclease-1 [Danaus plexippus]
Length = 424
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/425 (48%), Positives = 275/425 (64%), Gaps = 51/425 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESY-FGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL+KL+AD AP ++KE + + GRK+AIDASMS+YQFLI V G + LT+ G
Sbjct: 1 MGILGLSKLIADIAPMAVKETEIKIISVGRKVAIDASMSLYQFLIAVRSQGAQ-LTSVDG 59
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E TSHL G F RTIRL+E G+KP+YVFDG+PPD+K +L KR +R +A +L +A EAG
Sbjct: 60 ETTSHLMGTFYRTIRLIEDGIKPVYVFDGKPPDMKSHQLNKRAERREEAEKELQKATEAG 119
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAAL------------ 167
+ I+KF++R VKVT+QH + ++LLKLMG+PVVEAP EAEAQCA L
Sbjct: 120 DTASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVEAPCEAEAQCAELTSEGNLVDGLTN 179
Query: 168 ---------------------------------CKSGQVYAVASEDMDSLTFGAPRFLRH 194
K G+VYAVA+EDMD+LTFGA LRH
Sbjct: 180 PLLRRGPIPAAARARLPVTHTEVISGPPVGGVPVKGGKVYAVATEDMDALTFGANVLLRH 239
Query: 195 LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
L +RK+PV EF + ++L L L +FIDLCIL GCDYC SI+GIG + A++LI+QH
Sbjct: 240 LTFSEARKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGSIKGIGPKRAIELIKQH 299
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
SIE +L NI+ ++Y PE+W Y+ ARRLF++PE VT+ + +++KWS PDEEGL+ FL
Sbjct: 300 RSIEQVLHNIDTKKYSPPENWEYENARRLFQQPE-VTEAKDVELKWSDPDEEGLVKFLCG 358
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSK 374
+ FN +RV +K+ A+ ++QGRL+ FFK ++ T P KRK E+ K + NKK K
Sbjct: 359 DKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNP-KRKAEED--KKSANKKVK 415
Query: 375 AGGGG 379
G G
Sbjct: 416 TAGRG 420
>gi|255945091|ref|XP_002563313.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
gi|317374920|sp|B6HEM2.1|FEN1_PENCW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|211588048|emb|CAP86119.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 259/367 (70%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + L +E+GE
Sbjct: 1 MGIKHLYQVISENAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+ EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRVARKAEATEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +CK+LL+LMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECKKLLELMGIPFINAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + + LE L++ QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFESPILLRHLTFSEQRKEPIQEIHLDRALEGLDMDRAQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TAL LI++H S+E +LE N ++++ +PEDWPY++AR LF P+V D +
Sbjct: 240 KVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVVPEDWPYEDARELFTNPDVRPADHPEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW AP+ EGLI FLV + GFN DRV ++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPNVEGLIEFLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPVARTEDEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ASLKRKH 366
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/363 (49%), Positives = 256/363 (70%), Gaps = 4/363 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++D AP +++E + ++YFGRK+AIDASMS+YQFLI V + + L E+GE
Sbjct: 1 MGIKGLTALISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A + E + +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQQEEQKDVAD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++ ++R V+ T+QHN++ + LLKLMG+P V APSEAEAQCA L ++G+VYA SED
Sbjct: 121 VEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG P L+HL +K+PV + ++ K LE L + M QFIDLCIL GCDY D I+
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLGMDMAQFIDLCILLGCDYLDPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
GIG +TALKLIR+H ++E ++E+ E QIPE WP+QEAR++F+ P V ++ L
Sbjct: 241 GIGPKTALKLIREHKTLEKVVEHFKEEAKKSVQIPEHWPFQEARKIFENPHVQKGKD-LD 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
+KW PD EG++ FL + GF+ DRV K EK++ + + QGRL+ FF +AP +
Sbjct: 300 LKWETPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLGQKQQGRLDGFFTVNREGAAPKR 359
Query: 358 RKE 360
+ E
Sbjct: 360 KAE 362
>gi|426196176|gb|EKV46105.1| hypothetical protein AGABI2DRAFT_193982 [Agaricus bisporus var.
bisporus H97]
Length = 429
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/431 (46%), Positives = 275/431 (63%), Gaps = 49/431 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++ +AP +++E + ++ FGRK+AIDASMSIYQFLI V + EML+N+AGE
Sbjct: 1 MGIKGLTGLISQHAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PPDLKK L+KR+ +R +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKRFERREEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++K S+RTVKVTK+HN +C RLLKLMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 VEEVDKLSRRTVKVTKEHNAECIRLLKLMGIPVVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E + L+ L + M QFIDLCIL GCDY + IR
Sbjct: 181 MDTLTFNAPILYRHLTFSEAKKQPISEINLEVALKGLEMNMSQFIDLCILLGCDYLEPIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRER-------------------------------- 268
G+G ++ALKLIR++GS+ I+ ++ RE+
Sbjct: 241 GVGPKSALKLIREYGSLGKIIAHL-REKEADKKAAAQSADEAEDEPAPTSDAEPAEDEPK 299
Query: 269 -------------YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
++PEDWP++EA++LF+ P+VV +QL+++W+ PD +GL+ FLV E
Sbjct: 300 KKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVP-ADQLELEWNNPDVDGLVQFLVQE 358
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGRLESFF--KPVANTSAPIKRKEPENTPKATTNKKS 373
GFN +RV K EK++ N QGRL+ FF KP + K K + K+
Sbjct: 359 KGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDKPAPATKSDSKTKGTKRKNDGKA 418
Query: 374 KAGGGGGRKRK 384
+A G KRK
Sbjct: 419 EAASGKKAKRK 429
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/357 (50%), Positives = 250/357 (70%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KWS P E+ LI +L + F+ +RV I ++K S QGRL+ FF+ V T
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSSIQGRLDGFFQVVPKT 353
>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
gi|317374925|sp|Q6BLF4.2|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
Length = 379
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 252/365 (69%), Gaps = 7/365 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ ++AP++ KE + ++ FGRKIAIDASM +YQFLI V + + LTN+ GE
Sbjct: 1 MGVKGLNQLIKEHAPEAFKEFQLKNLFGRKIAIDASMCLYQFLIAVRQAEGQQLTNDEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRL+E +KP+YVFDG+PP LK EL KR +R +A + G
Sbjct: 61 TTSHLSGMFYRTIRLVENSIKPVYVFDGKPPVLKGGELEKRLLRREEAIKQRENIKDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+ ++ KRTV+VT++ ND+ K+LL+LMGVP V AP EAEAQCA L + G+V+A ASED
Sbjct: 121 IEDMVRYEKRTVRVTREQNDEAKKLLELMGVPYVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD++ + P LRHL +RK+P+ + + K+LE L + + FIDLCIL GCDYC++IR
Sbjct: 181 MDTICYQPPFLLRHLTFSEARKMPIDQIQYEKVLEALEMDRETFIDLCILLGCDYCETIR 240
Query: 241 GIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ I+E N ++ +++PEDWPY EAR+LF P+ + D ++
Sbjct: 241 GVGPVTAFKLIKEHGSLDKIVEYLTNNPDKTNFKVPEDWPYDEARKLFINPDTI-DASEV 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVANTSA 354
+KW PD EGLI ++V E GF+ DR+ EK+K QGRL+ FF+ P SA
Sbjct: 300 NLKWKEPDVEGLIQYMVKEKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFQSVPKPKDSA 359
Query: 355 PIKRK 359
KRK
Sbjct: 360 DKKRK 364
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/378 (46%), Positives = 257/378 (67%), Gaps = 5/378 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIRL+E +KP+YVFDG+PP LK EL KR +R +A + + G
Sbjct: 61 TTSHLSGLFYRTIRLVENNIKPVYVFDGKPPVLKGGELEKRLQRREEAQKQMDSIKDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ KF KR V+V++Q ND+ ++LL+LMG+P+V AP EAEAQCA L + G+V+A ASED
Sbjct: 121 VAEVMKFEKRLVRVSRQQNDEARKLLELMGIPIVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + ++ + L++T +QFIDLCIL GCDYC++I+
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAIAGLDMTKEQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ I+E IN + ++++PE+WPY EAR+LF +PE VT+ ++
Sbjct: 241 GVGPVTAFKLIKEHGSLDKIVEYINSNPEKTKFKVPENWPYDEARQLFLKPE-VTEASEV 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
+KW PD EGLI ++V E GF+ +R+ EK+K QGRL+ FF V P
Sbjct: 300 TLKWKEPDVEGLIQYMVKEKGFSEERIRSGAEKLKKGLKAGVQGRLDGFFSVVKPAGTPD 359
Query: 357 KRKEPENTPKATTNKKSK 374
+K T KK +
Sbjct: 360 SKKRKTETSSKNNKKKRR 377
>gi|425778472|gb|EKV16597.1| Flap endonuclease 1 [Penicillium digitatum PHI26]
gi|425784232|gb|EKV22023.1| Flap endonuclease 1 [Penicillium digitatum Pd1]
Length = 395
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/367 (51%), Positives = 257/367 (70%), Gaps = 8/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + +++FGRK+AIDASMSIY FLI V R+ + L +E+GE
Sbjct: 1 MGIKHLYQVISENAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAV-RSEGQQLMSESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+A + EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRVARKAEAAEAHEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +CK+LL LMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECKKLLGLMGIPFINAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E + + LE L++ QFIDLCIL GCDY + I
Sbjct: 180 MDTLCFESPILLRHLTFSEQRKEPIQEIHLDRALEGLDMDRPQFIDLCILLGCDYLEPIP 239
Query: 241 GIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TAL LI++H S+E +LE N ++++ +PEDWPY++AR LF P+V D +
Sbjct: 240 KVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVVPEDWPYEDARELFSNPDVRPADHAEC 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS--- 353
KW AP+ EGLI +LV + GFN DRV ++ + Q RLE FFKPVA T
Sbjct: 300 DFKWEAPNVEGLIEYLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPVARTEDEK 359
Query: 354 APIKRKE 360
A +KRK
Sbjct: 360 ASLKRKH 366
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/387 (49%), Positives = 260/387 (67%), Gaps = 14/387 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MGIKGL KLL + AP ++E + GR IAIDASM++YQFLI + G + LTN
Sbjct: 1 MGIKGLMKLLQEEAPSCIREVQMSHLAGRSIAIDASMALYQFLIAIRSNDGAGPAQALTN 60
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
+ GE TSHLQGMF+RTIRL+E G+KP+YVFDG+PP +K +EL KR +R A L EA
Sbjct: 61 QDGEDTSHLQGMFSRTIRLMENGIKPVYVFDGKPPVMKSKELEKRKDRRTAANKSLEEAT 120
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
EAGN +I++FSKR V T QH+ DCK LL+LMGVPV+ AP EAEA CA L K +VYA
Sbjct: 121 EAGNLVEIDRFSKRLVHATSQHSQDCKELLRLMGVPVLTAPCEAEATCATLAKHHKVYAS 180
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
+EDMD LTFG P R + +++K+P++E ++ + L+ L+LT QF+DLCIL GCDYC
Sbjct: 181 GTEDMDVLTFGTPVLYRRMTVAANKKVPILEIKLEQALKALDLTEQQFVDLCILCGCDYC 240
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDW-----PYQEARRLFKEPE 288
DSIRGIG + A I++H +IE L+++ N + IPE+W Y+ AR +F E
Sbjct: 241 DSIRGIGPKKAFNGIKEHKTIENFLQHLQQSNNKGVVIPEEWLGDDPIYKRAREMFVNAE 300
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 348
VV D ++ +KW P + L FLV ++GF +DRVT AI K+K +++ SQ RL+SFFK
Sbjct: 301 VV-DVNEVDLKWKEPLADELSRFLVDKHGFRADRVTTAIVKLKKSRSSQSQKRLDSFFKA 359
Query: 349 VANTSAPIKRKEPENTPKATTNKKSKA 375
V + P K++E +++ K KKS+A
Sbjct: 360 VPGATTPTKKREADSS-KRPAPKKSRA 385
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/357 (50%), Positives = 249/357 (69%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSETKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKT 353
>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|74586103|sp|Q5A6K8.1|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
Length = 372
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/351 (50%), Positives = 248/351 (70%), Gaps = 3/351 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A + G
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+VYA ASED
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GCDYC+SI+
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
GIG TA KLI++HGS++ I+E I N+ +Y +PE+WPY EAR+LF PE VT+ ++ +
Sbjct: 241 GIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPYDEARQLFMNPE-VTNASEINL 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
KW PD +GLI F+V + GF+ DR+ EK+K QGRL+ FFK V
Sbjct: 300 KWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVV 350
>gi|409079272|gb|EKM79634.1| hypothetical protein AGABI1DRAFT_114134 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 423
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/431 (47%), Positives = 277/431 (64%), Gaps = 55/431 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++ AP +++E + ++ FGRK+AIDASMSIYQFLI V + EML+N+AGE
Sbjct: 1 MGIKGLTGLISQLAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ +R +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFERREEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++K S+RTVKVTK+HN +C RLLKLMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 VEEVDKLSRRTVKVTKEHNAECIRLLKLMGIPVVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E + L+ L + M QFIDLCIL GCDY + IR
Sbjct: 181 MDTLTFNAPILYRHLTFSEAKKQPISEINLEAALKGLEMNMSQFIDLCILLGCDYLEPIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRER-------------------------------- 268
G+G ++ALKLIR++GS+ I+ ++ RE+
Sbjct: 241 GVGPKSALKLIREYGSLGKIIAHL-REKEADKKAAAQSADEAEDEPAPTSDAEPAEDEPK 299
Query: 269 -------------YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
++PEDWP++EA++LF+ P+VV +QL+++W+ PD +GL+ FLV E
Sbjct: 300 KKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVP-ADQLELEWNNPDVDGLVQFLVQE 358
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGRLESFF--KPVANTSAPIKRKEPENTPKATTNKKS 373
GFN +RV K EK++ N QGRL+ FF KP + AP + + + T K
Sbjct: 359 KGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKP-KDKPAPATKSDSK-----TKGTKR 412
Query: 374 KAGGGGGRKRK 384
KAG G KRK
Sbjct: 413 KAGSGKKTKRK 423
>gi|296411549|ref|XP_002835493.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629277|emb|CAZ79650.1| unnamed protein product [Tuber melanosporum]
Length = 481
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/361 (54%), Positives = 256/361 (70%), Gaps = 6/361 (1%)
Query: 5 GLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSH 64
GL LL +N S+K+ + + +FGRKIAIDASMSIY FLI V R+ + LT+E GE TSH
Sbjct: 100 GLFHLLQENTQDSIKDGEIKQHFGRKIAIDASMSIYSFLIAV-RSEGQQLTSETGETTSH 158
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI 124
L G+F RT+R+++ G+KP+YVFDG+PP LK ELAKR +++A+AT AEA E G E++
Sbjct: 159 LMGLFYRTLRMVDNGIKPLYVFDGRPPTLKSGELAKRSARKAEATAAHAEAKEVGTAEEV 218
Query: 125 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 184
EKFS+RTV+VTK+ ND+CKRLL MG+P VEAP EAEAQCAAL K+G+VYA AS+DMD+L
Sbjct: 219 EKFSRRTVRVTKEINDECKRLLTCMGIPYVEAPCEAEAQCAALAKAGKVYAAASDDMDTL 278
Query: 185 TFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 244
F P L+ LM +K PV E + + ++EL T DQFIDLCIL GCDYCD+I +G
Sbjct: 279 CFETPILLKKLMLSEMKKEPVQEIYLDRAMQELGFTRDQFIDLCILLGCDYCDTIPKVGP 338
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
TALKLIR+H SIE +L ++ +Y +P+ WPYQ+AR LFK P ++TD ++ + KW APD
Sbjct: 339 TTALKLIREHKSIENVLSHLG-PKYAVPKKWPYQDARELFKNP-LITDPDECEFKWEAPD 396
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---APIKRKEP 361
+ L+ FLV E GFN DRV K+ ++Q R+ FFKPV T+ A +KRK
Sbjct: 397 IDKLVAFLVGEKGFNEDRVRAGAVKLSKNLKGNTQARVNDFFKPVPKTAEELAGLKRKSE 456
Query: 362 E 362
E
Sbjct: 457 E 457
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/357 (50%), Positives = 249/357 (69%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKT 353
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/356 (51%), Positives = 249/356 (69%), Gaps = 6/356 (1%)
Query: 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG----TEMLTNE 57
GI GL LA AP +KE+ + + G+K+AIDASM++YQFLI V TG + LT+
Sbjct: 29 GIHGLGPFLAKEAPGCLKERSLQDFQGKKLAIDASMAMYQFLIAVRSTGENGVAQPLTSA 88
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
+GE TSHLQG F RTI +++AG++P+YVFDG+PP LK E+A R +R + L EA E
Sbjct: 89 SGEETSHLQGFFWRTIAMVKAGIRPLYVFDGKPPSLKSGEIASRNLRRDEGAKRLQEATE 148
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
GN E++ KF+KRT +VTKQH ++CKRLL+L+GVP V+APSEAEAQCAAL K+G VYA A
Sbjct: 149 EGNVEEMNKFAKRTTRVTKQHAEECKRLLRLLGVPTVDAPSEAEAQCAALAKNGLVYASA 208
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+L G+P +R L +RK+PV+E+ + ++L L L M QF+D CIL GCD+ +
Sbjct: 209 TEDMDALCCGSPILVRRLTMSEARKLPVLEYHLDQVLSSLGLNMTQFVDFCILCGCDFSE 268
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
+I+GIG ++AL IR+HG+IE+ +E++N ++ +P+ +P E R+L PEVV D L
Sbjct: 269 TIKGIGPKSALHGIRKHGNIESFIESLNTSKFVVPDPFPIDEIRQLLTTPEVV-DMGNLS 327
Query: 298 IKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
I W+A PDEEGLI FLV E GF+ RV +E IK AK QG+L+ FF P T
Sbjct: 328 IDWNAEPDEEGLIEFLVKEKGFSEKRVRGGLEAIKKAKMVKPQGKLDMFFSPKKTT 383
>gi|317374880|sp|C4YLS2.1|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
Length = 372
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 248/351 (70%), Gaps = 3/351 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A + G
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+VYA ASED
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GCDYC+SI+
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCESIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
GIG TA KLI++HGS++ I+E I N+ +Y +PE+WP+ EAR+LF PE VT+ ++ +
Sbjct: 241 GIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPFDEARQLFMNPE-VTNASEISL 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
KW PD +GLI F+V + GF+ DR+ EK+K QGRL+ FFK V
Sbjct: 300 KWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVV 350
>gi|300120156|emb|CBK19710.2| unnamed protein product [Blastocystis hominis]
Length = 370
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 258/352 (73%), Gaps = 8/352 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV---GRTGTEMLTNE 57
MGIKGL+KL+ APK+MKE + + Y GR IAIDAS+ IYQ L+ + + + MLTN
Sbjct: 1 MGIKGLSKLITAYAPKAMKEVESKRYIGRMIAIDASVMIYQSLVAIRMNNQFASVMLTNA 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
GEVTSH+QG+ ++TI+L+E G+KP++VF+G+PP++K+ EL +R R A ++L +A E
Sbjct: 61 EGEVTSHIQGILSKTIKLMEDGIKPVFVFEGKPPEMKQNELERRKQLREKAEEELKDAKE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
A N+E+IEK SKRTV + H +DCK LL+LMGVPV++A SEAE+QCA L K +V+A+A
Sbjct: 121 AENQEEIEKLSKRTVHMEGGHINDCKELLRLMGVPVIDAASEAESQCAELAKKKKVWAMA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRK---IPVMEFEVAKILEELNLTMDQFIDLCILSGCD 234
SEDMDSLTFG P +RHL K ++E ++A++LE + L+MD+FIDLCIL GCD
Sbjct: 181 SEDMDSLTFGTPVLIRHLTKSQGAKKDAQSILEVDLAEVLEAMKLSMDEFIDLCILCGCD 240
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 294
YCD IRGIG A + I+++ +IE ++EN+ ++YQ+PE+WPYQ+AR LFK P +VT E
Sbjct: 241 YCDGIRGIGQVKAYQFIQKYRTIEKVIENLT-DKYQVPENWPYQKARELFKNP-LVTPAE 298
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++++K+ D +GL+ FLV GFN++RV I+++ A++K Q R++SFF
Sbjct: 299 EIEVKFGEVDRKGLVEFLVDAKGFNAERVDNYIDRLIKARSKCQQKRMDSFF 350
>gi|254567327|ref|XP_002490774.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|317376166|sp|C4QZ20.1|FEN1_PICPG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238030570|emb|CAY68494.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|328351158|emb|CCA37558.1| flap endonuclease-1 [Komagataella pastoris CBS 7435]
Length = 373
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/349 (49%), Positives = 243/349 (69%), Gaps = 4/349 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL L+ +++PK+ + + +++FGRK+AIDASM +YQFLI V + + L NE GE
Sbjct: 1 MGIKGLNALINEHSPKAFRNGEMKTFFGRKVAIDASMCLYQFLIAVRQQDGQQLANEEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++ G+KP YVFDG+PP LK EL KR +R +A + E G
Sbjct: 61 TTSHLMGFFYRTIRMVGYGIKPCYVFDGKPPVLKGGELEKRLKRREEAEKQRLDMKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
DI KF +RTV+VT++ ND K+LL+LMG+P V+AP EAEAQCA L K G+VYA ASED
Sbjct: 121 LADIAKFERRTVRVTREQNDQAKKLLELMGIPYVDAPCEAEAQCAELAKGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRH+ +RK+PV E + AK++E L + + QFIDLCIL GCDYC++I+
Sbjct: 181 MDTLCYETPYLLRHMTTAEARKLPVTEIDYAKVMEGLEMELPQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
G+G TA KLI++HGSIE ++E I + + +IPE+WPY EAR LF PEV+ E +
Sbjct: 241 GVGPVTAFKLIKEHGSIEKVVEAIENNPKSKQKIPENWPYNEARELFLHPEVIPASE-CE 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++W PDEE L++++V ++GF+ R+ K++ + +QGRL+ FF
Sbjct: 300 LEWKEPDEEALVDYMVRQHGFSEQRIRDGASKLRKSLKTGTQGRLDKFF 348
>gi|401424227|ref|XP_003876599.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 395
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/350 (52%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MGI GL+KLL D +P +++EQ+ +++FGR+IAIDASMSIYQF+I + G E LTN
Sbjct: 1 MGILGLSKLLYDKSPNAIREQEMKNFFGRRIAIDASMSIYQFIIAMKGFQDGQGLE-LTN 59
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
E G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A + +A
Sbjct: 60 EKGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEARRQKAAEAEKEFEKAK 119
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
+AG+ E +EK SKRTV+V+++ D+ K+LL+LMG+PV++APSEAEAQCA L K G+ +AV
Sbjct: 120 DAGDDEMMEKMSKRTVRVSREQIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAV 179
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
+EDMD+LTFG+ LRHL ++K PV E + ++L+ L+MDQF+DLCIL GCDY
Sbjct: 180 GTEDMDALTFGSTIMLRHLNISDAKKRPVAEIHLDEVLQTTGLSMDQFVDLCILLGCDYV 239
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
+ GIG Q A + I+++GSIE+ LE+++ ++ +P D+ Y+EAR F+ PE VT E++
Sbjct: 240 PKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAFFQNPE-VTRAEEI 298
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I++S PDE GLI FLV E FN DRV K I +++ A + +QGRL+SFF
Sbjct: 299 DIQFSEPDEAGLIQFLVKEKLFNPDRVDKGIARLRTALTRKTQGRLDSFF 348
>gi|392591810|gb|EIW81137.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 437
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 274/417 (65%), Gaps = 59/417 (14%)
Query: 1 MGIKGLTKLLADNAPKSMK-------------------------------EQKFESYFGR 29
MGIKGLT L+ ++APK+++ E ++ FGR
Sbjct: 1 MGIKGLTALINEHAPKAIQVYRSLPRSSPSSPAASPRRRPADLTPYPAAQEHDIKTLFGR 60
Query: 30 KIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
K+AIDASMSIYQFLI V + EMLTN+AGE TSHL G F RTIR++E G+KP YVFDG+
Sbjct: 61 KVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGK 120
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
PPDLK L+KR+ KR +A ++ EA E G ED+++FS+RTV+VTK+HN++C+RLL+LM
Sbjct: 121 PPDLKSGVLSKRFEKREEAKEEGEEAKETGTAEDVDRFSRRTVRVTKEHNEECRRLLRLM 180
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
G+PV+ APSEAEAQCA L + G+VYA SEDMD+LTF AP LRHL ++K P+ E
Sbjct: 181 GIPVIVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFHAPVLLRHLTFSEAKKAPISEIH 240
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---- 265
+ + L+ L + M QFIDLCIL GCDY + I+G+G ++ALKLIR++G ++ ++E++
Sbjct: 241 LERALQGLEMDMSQFIDLCILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVEHLREKQA 300
Query: 266 ---------------------RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
Q+PE+WP++EA++LF++P+V+ +E ++++W PD
Sbjct: 301 EKAEAAAAAAEEDGKDGKKKKSGGIQVPEEWPWEEAKKLFEKPDVLPADE-VELEWKDPD 359
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF--KPVANTSAPIKRK 359
+GL+ FLV+E GFN +RV K EK++ N QGRL+ FF KP ++S+P K++
Sbjct: 360 VDGLVRFLVTEKGFNEERVRKGAEKLQRFLNTKQQGRLDGFFTVKPKDSSSSPPKKR 416
>gi|401841744|gb|EJT44085.1| RAD27-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 380
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/357 (50%), Positives = 250/357 (70%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP++K EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMGVP + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGVPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-----RYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKL+R HGSIE I+E I E +++IP+DWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWKIPDDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KWS P E+ LI +L +E F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 297 IDLKWSPPKEKELIEYLCNEKKFSEERVKSGIARLKKGLKSGIQGRLDGFFQVVPKT 353
>gi|365989632|ref|XP_003671646.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
gi|343770419|emb|CCD26403.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Length = 384
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/357 (50%), Positives = 248/357 (69%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT ++++NAP ++++ +++FGRK+AIDASMS+YQFLI V + LTN+AGE
Sbjct: 1 MGIKGLTAIISENAPLAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR ++RA+ AEA +
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRIARRAETEKKFAEATDQAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HND+ K+LL+LMG+P V AP EAEAQCA L K G+VYA ASED
Sbjct: 121 KIKQER---RLVKVSKEHNDEAKKLLELMGIPYVNAPGEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E ++L+ L LT++QFIDL I+ GCDYC++IR
Sbjct: 178 MDTLCYRTPYLLRHLTFSEAKKEPIQEINTEQVLQGLELTLEQFIDLGIMLGCDYCENIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
GIG TA KLI++HGS+E I+E I +++++PE+WPY+EAR LF P+++ D Q
Sbjct: 238 GIGPVTAFKLIKEHGSLEKIIEFIESDENTNKKWKVPENWPYKEARELFVTPDII-DGNQ 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KW P E+ LI FL E FN +RV I++++ Q RLE FFK V T
Sbjct: 297 ITLKWEPPKEDALIEFLCKEKLFNEERVKAGIKRLQKGLKAGVQTRLEGFFKVVPKT 353
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/350 (51%), Positives = 256/350 (73%), Gaps = 6/350 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MGI GL+KLL D +P +++EQ+ +++FGR+IA+DASMSIYQF+I + G E LTN
Sbjct: 1 MGILGLSKLLYDKSPNAIREQELKNFFGRRIAVDASMSIYQFIIAMKGFQDGQGLE-LTN 59
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
E G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A +A
Sbjct: 60 EKGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAERAFEKAK 119
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
+AG+ E +EK SKRTV+V++ D+ K+LL+LMG+PV++APSEAEAQCA L K G+ +AV
Sbjct: 120 DAGDDEMMEKMSKRTVRVSRDQIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAV 179
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
+EDMD+LTFG+ LRHL ++K P++E + ++L+ L+MDQF+DLCIL GCDY
Sbjct: 180 GTEDMDALTFGSTVMLRHLNISDAKKRPIVEIHLDEVLQTTGLSMDQFVDLCILLGCDYV 239
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
+ GIG Q A + I+++GSIE+ LE+++ ++ +P D+ Y+EAR F+ PE VT E++
Sbjct: 240 PKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAFFQNPE-VTRAEEI 298
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I++S PDE GLI FLV E FN DRV K I +++AA + +QGRL+SFF
Sbjct: 299 DIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAAFTRKTQGRLDSFF 348
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/379 (48%), Positives = 257/379 (67%), Gaps = 11/379 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + L NEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLANEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP++K EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMGVP + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGVPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRE-----RYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKL+R HGSIE I+E I E +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAP 355
+ +KWS P E+ L+ +L E F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 297 IDLKWSPPKEKELVEYLCDEKKFSEERVKSGIARLKKGLKSGIQGRLDGFFQVVPKTKEQ 356
Query: 356 I--KRKEPENTPKATTNKK 372
+ K + K++ NK+
Sbjct: 357 LAAAAKRAQEIKKSSKNKR 375
>gi|401624921|gb|EJS42958.1| rad27p [Saccharomyces arboricola H-6]
Length = 382
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/357 (50%), Positives = 250/357 (70%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PPD+K EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDMKSHELTKRSSRREETERKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G TALKL++ HGSIE I+E I + +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 GVGPVTALKLMKTHGSIEKIIEYIESGESSNAKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KWS P+E+ LI +L E F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 297 VNLKWSPPNEKELIQYLCDEKKFSEERVQSGITRLKKGLKSGIQGRLDGFFQVVPKT 353
>gi|323354056|gb|EGA85902.1| Rad27p [Saccharomyces cerevisiae VL3]
Length = 382
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/357 (50%), Positives = 248/357 (69%), Gaps = 9/357 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LAEA
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D +
Sbjct: 238 XVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNE 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 297 INLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKT 353
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/380 (49%), Positives = 259/380 (68%), Gaps = 12/380 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGR----TGTEMLTN 56
MGI GL+KLL D P ++KEQ+ + YFGR+IAIDASM+IYQFLI + G E LTN
Sbjct: 1 MGILGLSKLLYDKTPSAIKEQELQCYFGRRIAIDASMAIYQFLIALRSFQDGQGVE-LTN 59
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
+ GEVTSHL G+F RT+R+++ G++PIYVFDG+ P LK +EL R K DA +A
Sbjct: 60 DMGEVTSHLNGLFFRTLRMVDEGLRPIYVFDGKAPTLKSKELQNRRQKADDAIQKFKKAQ 119
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E G+ E +EK KRTV++T++ ++ K+LL+LMG+PVV+APSEAEAQCA L K + +AV
Sbjct: 120 EEGDAEMMEKMGKRTVRLTQEQMEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAV 179
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
+EDMD+LTFGAP LRHL ++K P+ EF + IL+ +TM+QF+DLCIL GCDY
Sbjct: 180 GTEDMDALTFGAPIMLRHLTYSEAKKRPIAEFHLDDILQTSGMTMEQFVDLCILLGCDYV 239
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
I GIG A + I++ SIE +E+++ ++ +PED+ Y EAR+ F PEV+ EE +
Sbjct: 240 PKIPGIGPHKAWEGIKKFHSIEAFIESLDSAKHVVPEDFHYSEARQFFIAPEVIPGEE-V 298
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
+I++ PDEEGLI FLV+E FN DRV K I++++ A K +QGRL+ FF AP
Sbjct: 299 EIQFREPDEEGLIQFLVNEKRFNRDRVEKGIQRLRNAIGKKTQGRLDQFFVITKPVRAP- 357
Query: 357 KRKEPENTPKATTNKKSKAG 376
P P AT K+S++
Sbjct: 358 ----PAEAP-ATGTKRSRSA 372
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/356 (51%), Positives = 246/356 (69%), Gaps = 6/356 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + ++ FGRK+AIDA + Q T E LTNE+GE
Sbjct: 1 MGIKSLYQIISENAPDAIKAGEIKNQFGRKVAIDAYVKTAQRY--RASTDEEQLTNESGE 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A + EA E G
Sbjct: 59 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGT 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CKRLLKLMG+P ++AP+EAEAQCA L K G+V+ ASED
Sbjct: 119 AEDVEKFSRRTVRVTREHNAECKRLLKLMGIPYIDAPTEAEAQCAVLAKEGKVFGAASED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GCDY D I
Sbjct: 179 MDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMEMTQFVDLCILLGCDYLDPIP 238
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALK+IR HG++E ++E I +++Y IP+DWPY +AR LF P+V D +
Sbjct: 239 KVGPNTALKMIRDHGTLEKVVETIESDPKKKYVIPDDWPYLQARDLFFNPDVRPADAPEC 298
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KW+APD EGL+ FLV E GF+ DRV ++ + Q RLE FFKPVA T
Sbjct: 299 DFKWTAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKT 354
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/363 (47%), Positives = 257/363 (70%), Gaps = 7/363 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ ++AP + KE + ++ FGRK+AIDASM +YQ+LI V + + LT+E GE
Sbjct: 1 MGVKGLNQLIKEHAPDAFKEYQLKNLFGRKVAIDASMCLYQYLIAVRQQDGQQLTSEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRL+E+G+KP+YVFDG+PP LK EL KR KR DA + + E G
Sbjct: 61 TTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKRLLKRQDALKQIEDLKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ K+ KRTV+ +++ ND+ K+LL+LMG+P + APSEAEAQCA L ++G+V+A ASED
Sbjct: 121 VEELMKYEKRTVRASREQNDEAKKLLELMGIPYIVAPSEAEAQCAELARAGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + LRHL +RK+P+ + + +L+ L++ F+DLCIL GCDYC++I+
Sbjct: 181 MDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ I+ EN + +Y++PE+WPY EA++LF PE +T +++
Sbjct: 241 GVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPE-ITKGDEV 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
+KW+ P+ +GL+ F+V + GF+ +R+ EK+K A QGRL+ FF V S+P
Sbjct: 300 DVKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTVV--KSSPA 357
Query: 357 KRK 359
KRK
Sbjct: 358 KRK 360
>gi|367003685|ref|XP_003686576.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
gi|357524877|emb|CCE64142.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
Length = 380
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/356 (50%), Positives = 249/356 (69%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++AP ++++ +++FGRK+AIDASMS+YQFLI V + LTNE GE
Sbjct: 1 MGIKGLNAIISEHAPTAVRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNENGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP YVFDG+PP LK EL KR ++R + LAEAVE
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRTARRVETEKKLAEAVE--- 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ DI K KR VKV+K+HND+ K LL+LMG+P V AP EAE+QCA L K G+VYA ASED
Sbjct: 118 QADILKQEKRLVKVSKEHNDEAKHLLELMGIPYVNAPCEAESQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E +LE L LT++QFIDL I+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEINTETVLEGLELTLEQFIDLGIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENI----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKLI++HGS+E I+E + + +++IPE+WPY+EAR LF P+V+ D +
Sbjct: 238 GVGPVTALKLIKEHGSLEKIIEFVESPDSNSKWKIPENWPYKEARDLFLNPDVI-DGADI 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KW P EE L+++L + F+ +RV I++++ QGRL+ FFK V T
Sbjct: 297 DLKWKPPQEEALVSYLCGDKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKVVPKT 352
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 258/352 (73%), Gaps = 4/352 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEM-LTNE 57
MGI GL+KLL D +P +++E++ +S+FGR+IAIDASMSIYQF+I + + G M LTNE
Sbjct: 1 MGILGLSKLLYDKSPNAIRERELKSFFGRRIAIDASMSIYQFIIAMKGFQDGQGMELTNE 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A + +A +
Sbjct: 61 QGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQKAAEAEREFEKAKD 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
AG+ E +EK SKRTV+V+++ ++ K+LL+LMGVPV++APSEAEAQCA L K G+ +AV
Sbjct: 121 AGDDEMMEKMSKRTVRVSREQIEESKKLLQLMGVPVIQAPSEAEAQCAELVKKGKAWAVG 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTFG+ LRHL ++K P+ E + ++L+ L+MDQF+DLCIL GCDY
Sbjct: 181 TEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQATGLSMDQFVDLCILLGCDYVP 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
+ GIG Q A + I+++G+IE+ LE+++ ++ +P D+ Y+EAR F PE VT E++
Sbjct: 241 KVPGIGPQRAWEGIQRYGNIESFLESLDAAKHMVPPDFCYREARAFFLNPE-VTRAEEID 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
I++S PDE GLI FLV E FN DRV K I +++AA K +QGRL++FF V
Sbjct: 300 IRFSEPDEAGLIQFLVKEKLFNPDRVNKGIARLRAALTKKTQGRLDNFFTIV 351
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/350 (51%), Positives = 255/350 (72%), Gaps = 6/350 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MGI GL+KLL D +P +++EQ+ +++FGR+IAIDASMSIYQF+I + G E LTN
Sbjct: 1 MGILGLSKLLYDKSPNAIREQELKNFFGRRIAIDASMSIYQFIIAMKGFQDGQGLE-LTN 59
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
E G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A + +A
Sbjct: 60 EKGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAEREFEKAK 119
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
+AG+ E +EK SKRTV+V++ D+ K+LL+LMG+PV++APSEAEAQCA L K G+ +AV
Sbjct: 120 DAGDDEMMEKMSKRTVRVSRDQIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAV 179
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
+EDMD+LTFG+ LRHL ++K P+ E + ++L+ L+M QF+DLCIL GCDY
Sbjct: 180 GTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQITGLSMGQFVDLCILLGCDYV 239
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
+ GIG Q A + I+++GSIE+ LE+++ ++ +P D+ Y+EAR F+ PE VT E++
Sbjct: 240 PKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAFFQNPE-VTPAEEI 298
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I++S PDE GLI FLV E FN DRV K I +++AA + +QGRL+SFF
Sbjct: 299 NIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAALTRKTQGRLDSFF 348
>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
gi|317376167|sp|A7TJ59.1|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 377
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 252/356 (70%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +++FGRK+AIDASMS+YQFLI V + LTNEAGE
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSDIKTFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL+KR ++R + L EA +
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETEKKLQEATDQAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HND+ K+LL+LMG+P + AP EAE+QCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVKVSKEHNDEAKQLLELMGIPYITAPCEAESQCAELAKCGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L+ L+LT++QF+DL I+ GCDYCDSI+
Sbjct: 178 MDTLCYRTPYLLRHLTFSEAKKEPIHEIDTELVLKGLDLTLEQFVDLGIMLGCDYCDSIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRE----RYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKLI+++GS+E I+E I + +++IP DWPY++AR LF +P+V+ E +
Sbjct: 238 GVGPVTALKLIKEYGSLEKIIEYIESDSSNSKWKIPNDWPYKDARELFLKPDVINGNE-V 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
++KW P+E+GLI+FL E F+ +RV IE++K QGRL+ FF+ V T
Sbjct: 297 ELKWQPPNEKGLIDFLCGEKKFSEERVKSGIERLKKGLKSGVQGRLDGFFQVVPKT 352
>gi|440797493|gb|ELR18579.1| XPG Iregion domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 434
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/328 (53%), Positives = 243/328 (74%), Gaps = 8/328 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M++Y FLI + LT+EAGE TSHL G+++RT+RL+ G+KP+YVFDG+PP +K
Sbjct: 1 MALYAFLISIRPDTGIWLTDEAGETTSHLMGIWSRTLRLIAYGIKPVYVFDGRPPVMKGT 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
EL KR +K+ +A L EA E G+ E + K KRTV VT +HN++CK+LL+LMG+PVVEA
Sbjct: 61 ELKKRSAKKKEAEQGLEEATELGDTETMRKLEKRTVHVTPKHNEECKKLLRLMGIPVVEA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA LC++G+V+A SEDMDSLTF P LRHL ++K P++E ++ K+L+
Sbjct: 121 PTEAEAQCAELCRAGKVFATGSEDMDSLTFATPILLRHLNYAEAQKKPIIEIDLEKVLKG 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP 276
+TM+QFIDLCIL+GCDYCD+IRGIG + AL++IR++GSIE L+N+++ +Y +PE +P
Sbjct: 181 FGMTMEQFIDLCILAGCDYCDTIRGIGPKRALEMIRKYGSIEGTLKNLDKAKYPLPEPFP 240
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
Y+ R LFK P+ VT +Q+++KW PDEEGL+ +LV E FN +RV K IEK+K A+
Sbjct: 241 YEAVRELFKHPD-VTPGDQVELKWGEPDEEGLLQYLVKEKQFNEERVRKGIEKLKKARGS 299
Query: 337 SSQGRLESFFKPVAN----TSAPIKRKE 360
+ QGRL+ F VAN TS+P K+KE
Sbjct: 300 AVQGRLDGF---VANMGKATSSPQKKKE 324
>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608857|sp|Q6FM28.1|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/356 (49%), Positives = 245/356 (68%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++ ++ P ++++ +++FGRK+AIDASMS+YQFLI V + L+ E GE
Sbjct: 1 MGIKGLNSIITEHVPSAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLSTETGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR S+R + LAEA E
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRREETEKKLAEATEEAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +R VKV+K+HND+ K+LL+LMG+P V AP EAEAQCA L K G+VYA ASED
Sbjct: 121 KM---KHERRLVKVSKEHNDEAKKLLELMGIPYVNAPGEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK P+ E +L+ L LT+DQFIDL I+ GCDYCDSI+
Sbjct: 178 MDTLCYRTPYLLRHLTFSEARKEPIHEINTEIVLQGLELTIDQFIDLGIMLGCDYCDSIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKL+++HGS+E I+E I ++++PE+WPY+EAR LF +P+V+ D ++
Sbjct: 238 GVGPVTALKLMKEHGSLEKIVEYIESGEANNKWKVPENWPYKEARELFVKPDVI-DANEI 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KW+ P E+ LI +L E F+ +RV I++++ QGRL+ FFK V T
Sbjct: 297 DLKWTPPKEDELIQYLCHEKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKVVPKT 352
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 251/356 (70%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+++NAP + + +++FGRK+AIDASMS+YQFLI V + L ++GE
Sbjct: 1 MGIKGLTALISENAPLATRRSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLATDSGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL+KR ++R + T L EA +
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETTKKLDEATDIAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +R VKV+K+HND+ K+LL+LMG+P V AP EAEAQCA L K G+VYA ASED
Sbjct: 121 KI---KHERRLVKVSKEHNDEAKKLLELMGIPYVNAPCEAEAQCAELAKVGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P +RHL ++K P+ E +L+ ++LT++QFIDL I+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPYLVRHLTFSEAKKEPIQEINTEIVLQSMDLTLEQFIDLGIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKLI++HGS+E I+E I+ + +++IPE+WPY+EAR LF +P+V+ + +
Sbjct: 238 GVGPVTALKLIKEHGSLEKIVEYIDSGDTKTKWKIPENWPYKEARELFLKPDVINGND-I 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KW+ P E+ LI++L + GF+ +RV I++++ QGRL+ FFK V T
Sbjct: 297 TLKWNPPKEQELIDYLCKDKGFSEERVKSGIKRLQKGLKSGVQGRLDGFFKAVPKT 352
>gi|354546051|emb|CCE42780.1| hypothetical protein CPAR2_204230 [Candida parapsilosis]
Length = 383
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 175/382 (45%), Positives = 260/382 (68%), Gaps = 9/382 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E +KP+YVFDG+PP LK EL KR +R +A + + + G+
Sbjct: 61 TTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMDQIKDEGS 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ K+ KR V+V + ND+ K+LL+LMG+P V AP EAEAQCA L + G+VYA ASED
Sbjct: 121 VAEVMKYEKRLVRVGRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + ++ +E L + DQFIDLCIL GCDYC++I+
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAMEGLGMPKDQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ ++E N ++ ++++PE+WPY+EAR LF PEV+ + ++
Sbjct: 241 GVGPVTAYKLIKEHGSLDNLVEYLQNNPDKTKFKVPENWPYKEARELFLHPEVM-EASKV 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF----KPVANT 352
++KW PD +GLI ++V + GF+ DR+ EK+K QGRL+ FF KP
Sbjct: 300 ELKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFSVVSKPKETN 359
Query: 353 SAPIKRKEPENTPKATTNKKSK 374
K+++ + K T+KK+K
Sbjct: 360 GKDDKKRKTGSDKKGPTSKKTK 381
>gi|403414469|emb|CCM01169.1| predicted protein [Fibroporia radiculosa]
Length = 400
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 181/362 (50%), Positives = 252/362 (69%), Gaps = 25/362 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL ++APK+++E ++ FGRK+AIDASMSIYQFLI +LT
Sbjct: 1 MGIKGLTSLLVEHAPKAIQEHDIKTLFGRKVAIDASMSIYQFLI-----APPVLTLNG-- 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
SHL G F RTIR++E G+KP+YVFDG+PP++K L+KR ++R +A ++ EA E G
Sbjct: 54 -YSHLMGFFYRTIRMVENGIKPLYVFDGKPPEMKAGVLSKRLARREEAKEEGEEAKETGT 112
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA L + G+VYA SED
Sbjct: 113 TEDVDRFSRRTVKVTREHNEECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSED 172
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL +RK P+ E + K LE L + M QFIDLCIL GCDY + I+
Sbjct: 173 MDTLTFSAPVLYRHLTFSEARKQPISEIHLDKALEGLEMNMSQFIDLCILLGCDYLEPIK 232
Query: 241 GIGGQTALKLIRQHGSIETILENINRE----------------RYQIPEDWPYQEARRLF 284
GIG ++ALKL+R+HG++ ++E++ + IPE+WP++EA+++F
Sbjct: 233 GIGPKSALKLVREHGNLGAVIEHLQEKLAAKEEAKEDGKKKKGGISIPEEWPWEEAKKVF 292
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
++P+ VT +Q+ I+W +PD +GL+ FLV+E GFN +RV K EK+ N QGRL+
Sbjct: 293 EKPD-VTPADQIDIEWKSPDADGLVQFLVTEKGFNEERVRKGAEKLAKFLNAKQQGRLDG 351
Query: 345 FF 346
FF
Sbjct: 352 FF 353
>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
gi|317374904|sp|C5DGG4.1|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans CBS 6340]
Length = 385
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/397 (46%), Positives = 265/397 (66%), Gaps = 25/397 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ + +++FGRK+AIDASMS+YQFLI V + L +E+GE
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSEIKNFFGRKVAIDASMSLYQFLIAVRQQDGVQLASESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP YVFDG+PP LK EL+KR ++RA + L EAVE
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRSARRATTEEKLKEAVEEAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +R VKVT +HN++ K+LL+LMG+P VEAP EAEAQCA L K+G+VYA ASED
Sbjct: 121 KL---KHERRLVKVTPEHNEEAKKLLRLMGLPYVEAPCEAEAQCAELAKAGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E +L+ L L+++QFIDL I+ GCDYCDSIR
Sbjct: 178 MDTLCYRTPFLLRHLTFSEAKKEPIHEINTEILLQGLELSIEQFIDLGIMLGCDYCDSIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKLI++H ++E I+E I ++++PE+WP++EAR+LF +P+VV E +
Sbjct: 238 GVGPVTALKLIKEHKTLENIVEYIESGQANNKWKVPENWPFKEARQLFLDPDVVKGSE-V 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
+KWS P E+ L++F+ E GFN +R+ I++++ QGRL+ FFK +
Sbjct: 297 DLKWSEPQEQELVDFMCKEKGFNEERIRSGIKRLQKGLKTGVQGRLDGFFK--------V 348
Query: 357 KRKEPENTPKATTNKKS-KAG--------GGGGRKRK 384
K K E A KS KAG G GR RK
Sbjct: 349 KPKNKEQLAAANAKAKSTKAGKQATKGKVGKPGRPRK 385
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 174/358 (48%), Positives = 253/358 (70%), Gaps = 5/358 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+KLL AP SMK+ K + YFGR +AIDAS+ +YQF+ V L NE GE
Sbjct: 1 MGIKGLSKLLQRYAPNSMKDGKIDQYFGRVVAIDASILVYQFISAVRDQEGSTLVNEYGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F RTI+L+ +G+KPIYVFDG+PP++K +EL KR + +A + L +A E+G+
Sbjct: 61 TTSHIIGTFYRTIKLMTSGVKPIYVFDGKPPEMKTEELKKRQTNAKEAIEKLEKAKESGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE+I+K KRT ++TK+ +DD K+L++LMG+P +EA EAE CA L KSG+ +A A+ED
Sbjct: 121 KEEIKKQMKRTARMTKEQSDDVKKLVELMGIPAIEANCEAEGTCAELVKSGKCFATATED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LT G+ LR ++K P+ E+ + ILEE TMD FIDLCIL GCDYC++I+
Sbjct: 181 MDALTLGSDIVLRKFSASDNKKEPIREYSLKSILEETGFTMDMFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG TA ++I+++ +IE +L+++++ +Y +P+ W Y+EAR LF P+ VT + + ++W
Sbjct: 241 GIGPVTAFEMIKEYKTIENLLKHLDKGKYIVPDGWKYKEARNLFLHPD-VTKADNITLEW 299
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PVANTSA 354
P+EE L+ +LV+E FN +RV I+K+K K+K +QGRL+SFFK P+ +SA
Sbjct: 300 KKPNEEELLKYLVTEKHFNEERVKSGIQKMKEIKSKGTQGRLDSFFKVKKAPLEKSSA 357
>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
gi|317374882|sp|C5M2X8.1|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
Length = 374
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 175/351 (49%), Positives = 242/351 (68%), Gaps = 3/351 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL KL+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTN+ GE
Sbjct: 1 MGVKGLNKLIKEHSPNAYKEYQLKNLFGRKVAIDASMCLYQFLISVRQSDGQQLTNDDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTI+++E +KP+YVFDG+PP LK EL KR +R +A + G
Sbjct: 61 TTSHLSGIFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKDALKDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED KF KR V+V+++ N++ K+LL+LMG+P+VEAP EAEAQCA L + G+VYA ASED
Sbjct: 121 VEDHLKFEKRLVRVSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARGGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P+ LRHL +RKIP+ E + + L++ +QF+DLCIL GCDYC++IR
Sbjct: 181 MDTLCYEPPQLLRHLTFAEARKIPIDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIR 240
Query: 241 GIGGQTALKLIRQHGSIETILENINR--ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
G+G TA KLI++HGS+E I+E I + +Y +PE+WPY EAR LF PE V + +
Sbjct: 241 GVGPVTAYKLIKEHGSLEKIVEWIEKGNTKYTVPENWPYAEARELFLNPE-VKKASDISL 299
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
KW PD EGLI ++V GF+ DR+ EK+K QGRL+SFF V
Sbjct: 300 KWKEPDVEGLIEYMVKGKGFSEDRIRSGAEKLKKGLKGGVQGRLDSFFTVV 350
>gi|363755676|ref|XP_003648053.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892089|gb|AET41236.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
Length = 430
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 255/388 (65%), Gaps = 8/388 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++ DN P++++ ++ +FGRK+AIDASMS+YQFLI V + L + GE
Sbjct: 47 MGIKGLNRIIQDNVPQAIRSREMRQFFGRKVAIDASMSLYQFLIAVRQQDGVQLASADGE 106
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP YVFDG+PP+LK EL KR +R + L E E
Sbjct: 107 TTSHLMGVFYRTLRMVDNGLKPCYVFDGRPPELKSHELDKRSERRKETERKLEELTEQA- 165
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+I K +R VKV K HN++ K+LL LMG+P V+APSEAEAQCA L K G+V+A ASED
Sbjct: 166 --EILKHERRLVKVEKWHNEEAKKLLGLMGIPYVDAPSEAEAQCAELAKKGKVFAAASED 223
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK P+ E + +L+ L+LT++QF+DL I+ GCDYC+SI+
Sbjct: 224 MDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLDLTLEQFVDLGIMLGCDYCESIK 283
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
GIG TALKLI++HGS+E I+E I ++++PE+W YQ+AR LF P+VV D ++L
Sbjct: 284 GIGPVTALKLIKEHGSLEKIIEYIESGAANAKWKVPENWAYQDARELFLTPDVV-DADEL 342
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPI 356
+KW P E+ LI ++ E GFN DR+ I+K++ QGRL+SFFK + +
Sbjct: 343 TLKWEDPKEDELIEYMCKEKGFNEDRIRSGIQKLRKGLKSGVQGRLDSFFKVKPKSKEEL 402
Query: 357 KRKEPENTPKATTNKKSKAGGGGGRKRK 384
R + ++ K+ G KR+
Sbjct: 403 ARASAKRAKDSSKKTKTSERKGKITKRR 430
>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
gi|317376173|sp|C5DZA9.1|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
Length = 379
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 178/356 (50%), Positives = 243/356 (68%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +++FGRK+AIDASMS+YQFLI V + L+ E+GE
Sbjct: 1 MGIKGLNAIISEHVPSAVRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR KR D L EAV+
Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPILKSFELKKRSDKRVDTEKKLEEAVDQAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+ +HND+ K LLKLMG+P + AP EAEAQCA L K G+VYA ASED
Sbjct: 121 KLKQER---RLVKVSPEHNDEAKYLLKLMGIPYIVAPCEAEAQCAQLAKDGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L+ L LT +QF+DL I+ GCDYC+SIR
Sbjct: 178 MDTLCYKTPYLLRHLTFSEAKKEPIHEIDTELVLQGLELTQEQFVDLGIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
GIG TALKLI++HGS+E I+E I ++++PEDWPY EAR+LF P+VV ++ +
Sbjct: 238 GIGPVTALKLIKEHGSLEKIVEFIESGQANNKWKVPEDWPYNEARQLFLNPDVVNSQD-I 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KW+ PDEE LI FL E FN +RV I++++ Q RL+ FF+ V T
Sbjct: 297 NLKWNPPDEEKLIEFLCHEKKFNEERVKSGIKRLQKGLKSGVQVRLDGFFQKVPKT 352
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/364 (49%), Positives = 247/364 (67%), Gaps = 10/364 (2%)
Query: 6 LTKLLADNAPKSMKEQKFESYFGRKIAI--DASMSIYQFLIVVGRTGTEMLTNEAGEVTS 63
L +++++NAP ++K + ++ FGRK D S FLI V R+ + L NE+GE TS
Sbjct: 22 LYQIISENAPDAVKSGEIKNQFGRKTDYIRDTLESNISFLIAV-RSDGQQLMNESGETTS 80
Query: 64 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 123
HL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A + EA E G ED
Sbjct: 81 HLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHEEAKETGTTED 140
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
+EKFS+RTV+VT++HN++CK+LLKLMG+P + AP+EAEAQCA L ++G+VYA ASEDMD+
Sbjct: 141 VEKFSRRTVRVTREHNEECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDT 200
Query: 184 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIG 243
L F +P LRHL RK P++E + ++LE L + F+DLCIL GCDY D I +G
Sbjct: 201 LCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIPKVG 260
Query: 244 GQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV-VTDEEQLQIK 299
TALKLIR HGS+E ++E N +++Y IP+DWPY++AR LF EP+V D + K
Sbjct: 261 PNTALKLIRDHGSLEKVVEAMKNDPKQKYTIPDDWPYEQARDLFFEPDVRPADHPECDFK 320
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS---API 356
W APD EGL+ FLV GF+ DRV +++ + Q RLE FFKPVA T A +
Sbjct: 321 WEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFFKPVAKTDEEKASL 380
Query: 357 KRKE 360
KRK
Sbjct: 381 KRKH 384
>gi|449016220|dbj|BAM79622.1| probable flap structure-specific endonuclease 1 [Cyanidioschyzon
merolae strain 10D]
Length = 380
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 194/385 (50%), Positives = 256/385 (66%), Gaps = 18/385 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+ L KL+ D+AP++ KEQ + FGR IAIDASM IYQFL+ V LTNE+GE
Sbjct: 1 MGIRQLAKLIVDHAPRAYKEQDIRALFGRVIAIDASMCIYQFLVAVRTADAANLTNESGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI+LLE G+KPIYVFDG+ PDLK ELAKR S+R + A+A E G+
Sbjct: 61 ITSHLSGVFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRREEDEQAAAKAREEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E K+++R KV+ + D+ KRLL+LMG+PVVEAPSEAEAQCA L ++G YA ASED
Sbjct: 121 LELYAKYARRVNKVSAETIDNVKRLLRLMGIPVVEAPSEAEAQCAVLTRAGLAYATASED 180
Query: 181 MDSLTFGAPRFLRHLM-------DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
MD+LTFG P +R+L + RK EF +A LE+L ++MDQFID+CIL GC
Sbjct: 181 MDALTFGTPLLIRNLFAALASGAERKDRK--PSEFSLAITLEDLGISMDQFIDICILCGC 238
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV--VT 291
DY +I IG AL L++QHG IE +L ++ + IP+D+ Y AR LFKEP V
Sbjct: 239 DYTCTIPKIGPYRALMLVKQHGCIEEVLASLRESNHPIPDDFDYLGARGLFKEPHVKDAA 298
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA--KNKSSQGRLESFFKPV 349
D E L ++W AP+EEGL+ FLV EN FN V KA+E++ A ++Q RL++FFKP
Sbjct: 299 DIEPL-LEWHAPNEEGLVQFLVQENSFNEQLVRKAVERMTKALRSGVANQSRLDNFFKP- 356
Query: 350 ANTSAPIKRKEPENTPKATTNKKSK 374
+ P K+ EPE + K+++
Sbjct: 357 --KTLP-KKHEPERPSSKRSTKRAR 378
>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
gi|317374907|sp|A5E121.1|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 384
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/360 (47%), Positives = 252/360 (70%), Gaps = 8/360 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTN+ GE
Sbjct: 1 MGVKGLNQLIKEHSPHAYKEFELKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNDEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E +KP+YVFDG+PP LK EL KR KR +A + + +
Sbjct: 61 TTSHLSGIFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQIDNLKDDAS 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
D+ K+ KR V+V++ ND+ K+LL+LMG+P V AP EAEAQCA L + G+V+A ASED
Sbjct: 121 VSDMTKYQKRLVRVSRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P+ LRHL +RK+P+ + + ++ L++T +QFIDLCIL GCDYC++I+
Sbjct: 181 MDTLCYEPPQLLRHLTFAEARKMPIDQITYKEAIQGLDMTKEQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ I+ EN ++ +Y++PE+WPY EAR+LF +PEV+ E +
Sbjct: 241 GVGPVTAYKLIKEHGSLDNIVKYLQENPDKTKYKVPENWPYNEARQLFMKPEVLPALE-V 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTS 353
++KW PD +GLI ++V GF+ DR+ EK+K QGRL+ FF V +NTS
Sbjct: 300 ELKWKEPDLDGLIEYMVKNKGFSEDRIRSGAEKLKKGLKAGIQGRLDGFFTVVPKYSNTS 359
>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
gi|317374887|sp|A3FPN7.1|FEN1_CRYPI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
Length = 490
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 189/380 (49%), Positives = 258/380 (67%), Gaps = 22/380 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK LADNAPKS+++Q S G+++AIDASM IYQFL + R G++ LTN +
Sbjct: 1 MGIKGLTKFLADNAPKSIQQQGIGSLLGKRVAIDASMWIYQFLAAI-REGSQWGNLTNSS 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ GM +RT RLLEAG+KP++VFDG PP++KK EL KR +R A +L +A E
Sbjct: 60 GESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDERREKALAELEKAQEI 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G++E I+K S RT+ VTK+ +D K+LL +G+P ++APSEAEAQCA LCK G VY V +
Sbjct: 120 GDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMPCIDAPSEAEAQCAELCKDGLVYGVVT 179
Query: 179 EDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
ED DSLTFG P ++ L PS +K + +++ IL EL++ MDQFIDL
Sbjct: 180 EDADSLTFGTPIQIKQLNFSESSNKITDKSPSKQKNGMQIIKLSLILSELDINMDQFIDL 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CILSGCDYC +IRGIG TA KL++++ +IE+IL+NI++ + IP ++ + + R LFK P
Sbjct: 240 CILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNIDQTKNPIPGNFDFSKVRELFKNP 299
Query: 288 EVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+V+ Q++ IKWS P E L+ +L+ E FN RV E+IK +KNK+SQ L+ F
Sbjct: 300 -LVSKNNQIKDLIKWSNPKYEELMEWLIKEQNFNEARVNSYCERIKKSKNKTSQTCLDGF 358
Query: 346 FKPVANTSAPIKRKEPENTP 365
FK +N +RK TP
Sbjct: 359 FKTASN-----ERKNTHETP 373
>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 190/395 (48%), Positives = 246/395 (62%), Gaps = 47/395 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG----TEMLTN 56
MGIKGL KLL+D AP ++E + +S GRKIAIDASM+IYQFLI V G MLTN
Sbjct: 1 MGIKGLAKLLSDEAPDCIREVELKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTN 60
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
GE TSH+QGMF RTIR + G++P++VFDG+PPD+K EL KR KR A LA A
Sbjct: 61 AEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQAALAVAS 120
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E GN E+ +K SKR V+ + N+DC++LL LMGVPVV AP EAEAQ AALCK+G VYA
Sbjct: 121 EEGNVEEQDKQSKRLVRAGTKENEDCRKLLTLMGVPVVTAPCEAEAQAAALCKAGLVYAT 180
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
+EDMD+LTF P +R L ++ K V K++E L ++ DQF+DLCI+ GCDYC
Sbjct: 181 GTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIEGLAISHDQFVDLCIMLGCDYC 240
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--------------------- 275
D+IRG+G +TALKLIR+HG+IE ++E I+R+++ +PE W
Sbjct: 241 DTIRGVGPKTALKLIREHGNIEKVIETIDRKKFVVPESWVPNEKKLDAQSDDDDEEGVES 300
Query: 276 -----------------PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
Y +AR+LF E EV+ D +++KW E L FLV + GF
Sbjct: 301 PSKEENNGIVDTEELIPAYVQARKLFNEHEVLND---IELKWKPCQAEDLQKFLVDDMGF 357
Query: 319 NSDRVTKAIEKIKAA--KNKSSQGRLESFFKPVAN 351
N DRV IEK++AA N Q R++SFF AN
Sbjct: 358 NVDRVKNNIEKLQAAYKANSKPQTRMDSFFAVKAN 392
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 248/356 (69%), Gaps = 8/356 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++++ P ++++ +S+FGRK+AIDASMS+YQFLI V + L+ E GE
Sbjct: 1 MGIKGLNAIISEHVPTAVRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTETGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP YVFDG+PP +K EL KR S+R + LAEA++
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVMKSHELGKRSSRREETEKKLAEAIDQAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R V+V+K+HND+ K+LL+LMGVP + AP+EAEAQCA L K G+VYA ASED
Sbjct: 121 KMKQER---RLVRVSKEHNDEAKQLLELMGVPYLTAPTEAEAQCAELAKKGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K P+ E + +L L LT++QF+DL I+ GCDYC+SIR
Sbjct: 178 MDTLCYRTPYLLRHLTFSEAKKEPIHEIDTETVLNGLGLTIEQFVDLGIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRE----RYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TALKLI++HGS+E I+E + + +++IPEDWPY+EAR LF P+V+ D ++
Sbjct: 238 GVGPVTALKLIKEHGSLEKIIEFVESDESNSKWKIPEDWPYKEARELFLNPDVI-DGNEV 296
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KWS P E+ LI+FL ++ F+ +RV I ++K Q RL+ FF+ V T
Sbjct: 297 NLKWSPPKEDELIDFLCNQKKFSEERVRSGIVRLKKGLKSGVQVRLDGFFQVVPKT 352
>gi|401413646|ref|XP_003886270.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
gi|325120690|emb|CBZ56245.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
Length = 545
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 181/367 (49%), Positives = 249/367 (67%), Gaps = 11/367 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGI+GL K + D AP+++K Q+ S+ GR IAIDASMS+YQF++ + R G TN+A
Sbjct: 1 MGIRGLGKFVGDFAPRAIKRQEVGSFTGRVIAIDASMSLYQFMVAI-RDGNSFGNFTNDA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G+ TSH+ GM R IRLLE G++P+YVFDG+PP+LK ELAKR R A +A E
Sbjct: 60 GDCTSHIAGMLNRAIRLLEQGIRPVYVFDGKPPELKSGELAKRREVRESAQVAAEKAREE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E++ K R+V+V++QHNDD KRLL+LMG+PVVEAP EAEAQCA L K +V+A A+
Sbjct: 120 GNAEELRKQIVRSVRVSQQHNDDIKRLLRLMGLPVVEAPCEAEAQCAELTKHKKVWATAT 179
Query: 179 EDMDSLTFGAPRFLRHL-----MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
ED D+LTFGA R +R+L S+ ++ ++ +LEEL + +QFID CIL GC
Sbjct: 180 EDADALTFGATRLIRNLTFSERTGSSASASAILVIDLPTLLEELKFSQEQFIDFCILCGC 239
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 293
DYC +++G+G +TA LIR+HGS+E ILE ++ ++ IPE + +QEAR F+ P+ VT
Sbjct: 240 DYCGTLKGVGAKTAYGLIREHGSVEKILEVVDPQK--IPEAFCFQEARAFFRNPD-VTPA 296
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 353
+Q+Q+ W D EGL FLV EN FN RV I ++K A+ K++Q RLESFF S
Sbjct: 297 DQIQLTWGEVDVEGLKTFLVKENQFNEQRVENYIARLKKARGKTAQTRLESFFGAAVTKS 356
Query: 354 APIKRKE 360
+ + K+
Sbjct: 357 SSLMHKQ 363
>gi|448526873|ref|XP_003869406.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis Co 90-125]
gi|380353759|emb|CCG23271.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis]
Length = 382
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/381 (45%), Positives = 259/381 (67%), Gaps = 8/381 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ +++P + KE + ++ FGRK+AIDASM +YQFLI V ++ + LTNE GE
Sbjct: 1 MGVKGLNQLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E +KP+YVFDG+PP LK EL KR +R +A + + + G
Sbjct: 61 TTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMDQIKDEGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+++ K+ KR V+V + ND+ K+LL+LMG+P V AP EAEAQCA L + G+V+A ASED
Sbjct: 121 VDEVMKYEKRLVRVGRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + ++ +E L + +QFIDLCIL GCDYC++I+
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAMEGLGMPKEQFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ ++E N ++ ++++PE+WPY+EAR LF PEV+ E +
Sbjct: 241 GVGPVTAYKLIKEHGSLDNLVEYLQKNPDKTKFKVPENWPYKEARELFLHPEVIEATE-V 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN---TS 353
++KW PD +GLI ++V + GF+ DR+ EK+K QGRL+ FF V+ +
Sbjct: 300 ELKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFTVVSKPKEAN 359
Query: 354 APIKRKEPENTPKATTNKKSK 374
+K N K +TNKK+K
Sbjct: 360 GKDDKKRKNNDKKGSTNKKAK 380
>gi|294867245|ref|XP_002765023.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239864903|gb|EEQ97740.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 407
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/398 (46%), Positives = 259/398 (65%), Gaps = 21/398 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV---GRTGTEMLTNE 57
MGIK L K +++NAPK++ EQK E+Y GR +A+DASM +YQF+I V G LTN
Sbjct: 1 MGIKQLFKFVSENAPKAVSEQKMENYTGRSLAVDASMCLYQFVIAVRLGGDNQHANLTNA 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSH+ GM TRT+R++EAG+KP+YVFDG+PP LK ELAKR + A +DL EA+E
Sbjct: 61 AGEVTSHISGMVTRTLRMMEAGIKPVYVFDGKPPSLKTGELAKRREVKKKAEEDLKEAIE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ E I K + R+ +VT Q N D K+LL +MG ++EAP EAEA CAAL + G+ Y
Sbjct: 121 KGDDEGIRKAAHRSTRVTPQMNADVKKLLTMMGCCIIEAPEEAEATCAALVRYGKCYGAV 180
Query: 178 SEDMDSLTFGAPRFLRHLMDP-------SSRKI--PVMEFEVAKILEELNLTMDQFIDLC 228
++DMD LTFG+P +++L + S+ K PV E ++ +LE+L+++MDQFID C
Sbjct: 181 TDDMDVLTFGSPVQVKNLFNTLGSGQQGSAGKTTKPVYEMSLSTVLEQLDVSMDQFIDFC 240
Query: 229 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP---YQEARRLFK 285
I+ GCDY D+IRGIG A KLI +H SIE +L++I++ ++ +PE W Y+ R F
Sbjct: 241 IMCGCDYLDTIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVPESWAAGDYKTVREYFL 300
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ V + E + + W PD EGL FLV +N F+ DRV K I ++K K +Q RL++F
Sbjct: 301 DAPAV-ERENMNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMRLDTF 359
Query: 346 FKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKR 383
FK T+ P +KE + P KK+ A GGRKR
Sbjct: 360 FK----TTKPAIKKEDKFDPFKKETKKNGA-STGGRKR 392
>gi|241627391|ref|XP_002409855.1| endonuclease, putative [Ixodes scapularis]
gi|215503262|gb|EEC12756.1| endonuclease, putative [Ixodes scapularis]
Length = 384
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 196/396 (49%), Positives = 256/396 (64%), Gaps = 26/396 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+K++ADNAP ++KE +SYFG+KIAIDASM +YQFLI V R MLTN GE
Sbjct: 1 MGITGLSKVIADNAPSAIKEGDIKSYFGKKIAIDASMCLYQFLIAV-RQENNMLTNSDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE--- 117
T + G+ TR L G P+ P L + K + L V+
Sbjct: 60 TTRY--GLPTRAHGLDCTG--PVRRGLNVPSVLFIAD-----CKSCNHVRHLCNFVKLNL 110
Query: 118 ----AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
+GN+EDI KFSKR VKVT+QH +DCKRLL LMGVP +EAP EAEAQCA L K G+V
Sbjct: 111 RCSFSGNQEDINKFSKRLVKVTRQHGEDCKRLLGLMGVPYIEAPCEAEAQCAELVKGGKV 170
Query: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
Y A+EDMD LTFG LRH+ +RK+P+ EF + ++L L L D+FIDLCIL GC
Sbjct: 171 YGTATEDMDGLTFGTNVLLRHMTYSEARKMPIKEFNLERVLSGLELNRDEFIDLCILLGC 230
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-----RYQIPEDWPYQEARRLFKEPE 288
DYC+SIRGIG + A++LI+QH SIE I+ +I+ + +Y IPEDWP++EAR+LF EPE
Sbjct: 231 DYCESIRGIGPKRAIELIKQHKSIEKIISSIDTKACCDTKYTIPEDWPFKEARQLFLEPE 290
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 348
VT ++Q+KW+ PDE+GL+ FL ENGF+ +R+ +K+ +N ++QGRL+SFFK
Sbjct: 291 -VTPASEIQLKWTDPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKV 349
Query: 349 VANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
V + KRK + K NKK K GG+ RK
Sbjct: 350 VPSEGPSAKRK---SESKDEQNKKKKGASRGGKFRK 382
>gi|116203453|ref|XP_001227537.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88175738|gb|EAQ83206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 378
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 173/323 (53%), Positives = 225/323 (69%), Gaps = 5/323 (1%)
Query: 36 SMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 95
SMSIY FLI V R+ + L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 19 SMSIYSFLIAV-RSDGQQLMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKS 77
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
ELAKR+ ++ +A + L EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P +
Sbjct: 78 GELAKRFQRKQEANEGLEEAKETGTAEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIL 137
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP+EAEAQCA L ++G+VYA ASEDMD+L F P LRHL RK P+ E V K+LE
Sbjct: 138 APTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHVEKVLE 197
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIP 272
LN+ QF+DLCIL GCDY D I +G TALKLIR+HGS+E ++E N + RY +P
Sbjct: 198 GLNMERKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKSRYTVP 257
Query: 273 EDWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
+DWP+++AR LF P+V D+ KW PD EGL+ FLV E GF+ DRV +++
Sbjct: 258 DDWPFEDARDLFFSPDVRQADDPLCDFKWDKPDMEGLVKFLVQEKGFSEDRVRSGGARLE 317
Query: 332 AAKNKSSQGRLESFFKPVANTSA 354
S Q R+E FFK V T A
Sbjct: 318 KNLKSSQQSRIEGFFKVVPKTEA 340
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 181/375 (48%), Positives = 252/375 (67%), Gaps = 12/375 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGL + L DNAPKS+++Q +S GR IAIDASM +YQFL + R G++ LTNEA
Sbjct: 1 MGIKGLARFLVDNAPKSIQQQSIDSLIGRIIAIDASMWMYQFLAAI-REGSQWGNLTNEA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ GM +RTIRLLEAG+KP++VFDG+PP+LK +EL KR +R A +L +A E
Sbjct: 60 GESTSHISGMLSRTIRLLEAGIKPVFVFDGEPPELKMEELMKRKERREKAQQELEKAQEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G+ E I K RT+K+TK+ +DD K +LKL+G+PV+EA SEAEAQCA LCK G VY VA+
Sbjct: 120 GDTETIRKQLIRTIKITKEQSDDVKYMLKLLGIPVIEATSEAEAQCAELCKEGLVYGVAT 179
Query: 179 EDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 230
ED DSLTFG P +RHL + K + +++ +L +L L+M QF+DLCIL
Sbjct: 180 EDADSLTFGTPLVIRHLNFSDGKFSDSKGNSKNSLQVIKLSTVLSDLGLSMQQFVDLCIL 239
Query: 231 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
GCDYC +IRGIG TA KL+++H IETI+ +++ ++ +P + Y + R LF P V+
Sbjct: 240 CGCDYCGTIRGIGALTAYKLLKKHKDIETIINELDKNKHPLPMSFDYIKVRELFTNPNVI 299
Query: 291 TDEE-QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
+E + ++KW+ P+ EGL +L+ + F+ RV +IK +K K++Q L+SFF
Sbjct: 300 KAKEFRDKLKWTNPNLEGLSEWLIKQQNFSEVRVANYCTRIKKSKGKTAQTSLDSFFTLT 359
Query: 350 ANTSAPIKRKEPENT 364
++ K KE E T
Sbjct: 360 PKKTSENKNKEKEIT 374
>gi|440795563|gb|ELR16683.1| hypothetical protein ACA1_089310 [Acanthamoeba castellanii str.
Neff]
Length = 343
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 171/363 (47%), Positives = 253/363 (69%), Gaps = 24/363 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+AD P+++KE +SYFGRK+A+DAS+++Y FLI + LTN +G+
Sbjct: 1 MGVKGLMQLIADACPQALKETGADSYFGRKVALDASLALYSFLIALSPLSGSFLTNPSGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TS+L G+++RT+RL+ G+KP +VFD S RA L A + +
Sbjct: 61 DTSYLMGLWSRTLRLVACGIKPAFVFD---------------SVRA-----LGAAAQPQS 100
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS--EAEAQCAALCKSGQVYAVAS 178
++R V+VT H ++CK+LL LMG+PVV+AP+ EAEAQCA LC++G+V+AV S
Sbjct: 101 AAHSPPGARRVVRVTPTHIEECKKLLGLMGMPVVQAPAGGEAEAQCAELCRAGKVFAVGS 160
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
EDMD+LTFGAP LRHL +RK+P++E E+ K+LE L LTM+QFIDLCIL+GCDYCD+
Sbjct: 161 EDMDALTFGAPVLLRHLTFSEARKLPIVEIELPKVLEGLGLTMEQFIDLCILAGCDYCDT 220
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
IRG+G + AL LI+QHGS+E +++N+++ + +P+ +P++ R LFK P V+ +E +++
Sbjct: 221 IRGVGPKRALALIKQHGSVEQVIKNLDKAKNPLPDQFPFEATRELFKHPNVIPGDE-VEL 279
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA-KNKSSQGRLESFFKPVANTSAPIK 357
+W +PDEEGL+ +LV+E GFN +RV K I +KA K + QGR++SFF +S+
Sbjct: 280 QWGSPDEEGLLEYLVAEKGFNEERVRKGIATLKAGRKPQPVQGRIDSFFTSAGKSSSSTL 339
Query: 358 RKE 360
+KE
Sbjct: 340 KKE 342
>gi|403216014|emb|CCK70512.1| hypothetical protein KNAG_0E02520 [Kazachstania naganishii CBS
8797]
Length = 380
Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 245/355 (69%), Gaps = 7/355 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++ ++AP +++ + +++FGRK+AIDASMS+YQFLI V + LT+ G
Sbjct: 1 MGIKGLNGIIMESAPLAVRRSEMKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTDAEGG 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG PP LK+ EL KR +RA+ L EA +
Sbjct: 61 TTSHLMGMFYRTLRMVDNGIKPCYVFDGAPPALKQHELGKRTQRRAETEQRLKEATDLAE 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K E+ R VKV+K+HN++ K+LL LMGVP V+AP EAEAQCA L K G+VYA ASED
Sbjct: 121 KAKQER---RLVKVSKEHNEEAKKLLGLMGVPYVDAPGEAEAQCAELAKGGKVYAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL ++K PV E + +L+ + LT++QF+DL I+ GCDYC+SIR
Sbjct: 178 MDTLCYKTPYLLRHLTFSEAKKEPVQEIDTLAVLDAMELTIEQFVDLGIMLGCDYCESIR 237
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
G+G TALKLIR+H S+E I++ I+ E++++PE+WPY+E R+LF +P+ VT ++
Sbjct: 238 GVGPVTALKLIREHKSLEGIVQYIDSGSNEKWKVPENWPYKEVRKLFLDPD-VTPASEIT 296
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+KW P EE L+ +L E F+ +RV +++++A QGRL+ FFK V T
Sbjct: 297 LKWEPPQEEELVKYLCGEKLFSEERVRSGVKRLRAGLKSGVQGRLDGFFKVVPKT 351
>gi|303312977|ref|XP_003066500.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106162|gb|EER24355.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 359
Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 173/330 (52%), Positives = 230/330 (69%), Gaps = 8/330 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V R+ + L NE+GE TSHL G F RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAV-RSDGQQLMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR +++ +A + EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++A
Sbjct: 60 ELAKRMARKQEAAEQHEEAKETGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P+ E + ++LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIPE 273
L + QF+DLCIL GCDY D I +G TALK+IR HGS+E + +EN +++Y IPE
Sbjct: 180 LGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPE 239
Query: 274 DWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPY++AR LF EP+V D + KW +PD EGL+ FLV GF+ DRV +++
Sbjct: 240 DWPYEQARDLFFEPDVRPADHPECDFKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQK 299
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRK 359
+ Q RLE FFKPVA T A +KRK
Sbjct: 300 NLKTAQQSRLEGFFKPVAKTEEEKASLKRK 329
>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
Length = 376
Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 240/356 (67%), Gaps = 24/356 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++++NAP ++K + ++ FGRK+AI LTNE+GE
Sbjct: 1 MGIKNLYQIISENAPDAVKSGEIKNQFGRKVAI--------------------LTNESGE 40
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A + EA E G
Sbjct: 41 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGT 100
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V+ ASED
Sbjct: 101 TEDVEKFSRRTVRVTREHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASED 160
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GCDY D I
Sbjct: 161 MDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIP 220
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALK+IR HG++E ++E I +++Y IPEDWPY +AR LF P+V D +
Sbjct: 221 KVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPEDWPYLQARELFFNPDVRPADAPEC 280
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
KWSAPD EGL+ FLV E GF+ DRV ++ + Q RLE FFKP+A T
Sbjct: 281 DFKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPLAKT 336
>gi|320590957|gb|EFX03398.1| DNA-repair protein rad2 [Grosmannia clavigera kw1407]
Length = 856
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 172/321 (53%), Positives = 231/321 (71%), Gaps = 5/321 (1%)
Query: 36 SMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 95
SMSIY FLI V R+ +MLT++AGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 498 SMSIYSFLIAV-RSEGQMLTSDAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKS 556
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
ELA+RY ++ +AT+ L EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P +
Sbjct: 557 GELARRYMRKQEATEGLEEAKETGTAEDIEKFSRRTVRVTREHNTECQRLLKLMGIPFIV 616
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP+EAEAQCA L ++G+VYA ASEDMD+L F P LRHL RK P+ E + K+L
Sbjct: 617 APTEAEAQCAELARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKLLL 676
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIP 272
LN+ +QF+DLCIL GCDY D I +G TALKLIR+HGS+E ++E + ++++ IP
Sbjct: 677 GLNMEREQFVDLCILLGCDYLDPIPKVGPNTALKLIREHGSLEKVVEFMKTDKKQKFVIP 736
Query: 273 EDWPYQEARRLFKEPEVVT-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
+DWPY++AR LF +P+V + + + KW PD GL+ FLV+E GF+ DRV A +++
Sbjct: 737 DDWPYEDARELFFKPDVRSASDPECDFKWEKPDVPGLVQFLVNEKGFSEDRVRSAAARLE 796
Query: 332 AAKNKSSQGRLESFFKPVANT 352
+ Q RLE FFKPV T
Sbjct: 797 KHLKGTQQQRLEGFFKPVPKT 817
>gi|294893362|ref|XP_002774434.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239879827|gb|EER06250.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 407
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 259/398 (65%), Gaps = 21/398 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV---GRTGTEMLTNE 57
MGIK L K +++NAPK++ EQK E+Y GR +A+DASM +YQF+I V G LTN
Sbjct: 1 MGIKQLFKFVSENAPKAVSEQKMENYTGRSLAVDASMCLYQFVIAVRLGGDNQHANLTNA 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSH+ GM TRT+R++EAG+KP+YVFDG+PP LK ELAKR + A +DL EA+E
Sbjct: 61 AGEVTSHISGMVTRTLRMMEAGIKPVYVFDGKPPSLKTGELAKRREVKKKAEEDLKEAIE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ E I K + R+ +VT Q N D K+LL +MG ++EAP EAEA CAAL + G+ Y
Sbjct: 121 KGDDEGIRKAAHRSTRVTLQMNADVKKLLTMMGCCIIEAPEEAEATCAALVRYGKCYGAV 180
Query: 178 SEDMDSLTFGAPRFLRHLMDP-------SSRKI--PVMEFEVAKILEELNLTMDQFIDLC 228
++DMD LTFG+P +++L + S+ K PV E ++ +LE+L+++MDQFID C
Sbjct: 181 TDDMDVLTFGSPVQIKNLFNTLGSGQQGSAGKTTKPVYEMSLSTVLEQLDVSMDQFIDFC 240
Query: 229 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP---YQEARRLFK 285
I+ GCDY ++IRGIG A KLI +H SIE +L++I++ ++ +PE W Y+ R F
Sbjct: 241 IMCGCDYLETIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVPESWAAGDYKTVREYFL 300
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ V + E + + W PD EGL FLV +N F+ DRV K I ++K K +Q RL++F
Sbjct: 301 DAPAV-ERENMNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMRLDTF 359
Query: 346 FKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKR 383
FK T+ P +KE + P +K+ A GGRKR
Sbjct: 360 FK----TTKPAIKKEDKFDPFKKETRKNGA-STGGRKR 392
>gi|295663294|ref|XP_002792200.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279375|gb|EEH34941.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 381
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/334 (52%), Positives = 236/334 (70%), Gaps = 8/334 (2%)
Query: 36 SMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 95
SMSIY FL+ V R+ + L +E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 22 SMSIYSFLVAV-RSDGQQLMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKS 80
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
ELAKR+ ++++A + EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++
Sbjct: 81 GELAKRFMRKSEAAEAHEEAKEIGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYID 140
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P++E + ++LE
Sbjct: 141 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLE 200
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIP 272
+L++ QF+DLCIL GCDY D I IG TALKLIR HGS+E ++E I +++Y IP
Sbjct: 201 DLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIP 260
Query: 273 EDWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
EDWPY++AR LF +P+V D KW APD EGL+ FLV E F+ DRV A +++
Sbjct: 261 EDWPYKDARELFFDPDVRKADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQ 320
Query: 332 AAKNKSSQGRLESFFKPVANTS---APIKRKEPE 362
+ Q RLE FFKP+A T A +KRK E
Sbjct: 321 KNLKTAQQSRLEGFFKPIAKTQEEKATLKRKHEE 354
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 181/387 (46%), Positives = 258/387 (66%), Gaps = 8/387 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEM-LTNE 57
MG+ GL+KLL D P ++KEQ+ + YFGR+IAIDASM++YQF+I + + G + LTNE
Sbjct: 1 MGVLGLSKLLYDRTPGAIKEQELKVYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTNE 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AG+VTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL R + DA + +A E
Sbjct: 61 AGDVTSHLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQRAEDAKHEFEKAKE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ E +EK SKR V+V + ++ K LL+LMG+PVV+APSEAEAQCA L K + +AV
Sbjct: 121 EGDDEAMEKMSKRMVRVGRDQMEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVG 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+L FG+ LRHL ++K P+ E+ + +ILE +M QFIDLCIL GCDY
Sbjct: 181 TEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCDYVP 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I GIG A + I+++GS+E +E+++ RY +PE++ Y++AR F EPE VT E++
Sbjct: 241 RISGIGPHKAWEGIKKYGSLEAFIESLDGTRYVVPEEFNYKDARNFFLEPE-VTPGEEID 299
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
I++ PDEEGLI FLV E F+ +RV K I++++ A K +QGRL+ FF + P K
Sbjct: 300 IQFREPDEEGLIKFLVDEKLFSKERVLKGIQRLRDALTKKTQGRLDQFF----TITKPQK 355
Query: 358 RKEPENTPKATTNKKSKAGGGGGRKRK 384
+ E + T + G +RK
Sbjct: 356 QVNSEASTAGTKRNRGAVALPGVLQRK 382
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/349 (50%), Positives = 248/349 (71%), Gaps = 4/349 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEM-LTNE 57
MG+ GL+KLL D AP ++KE++ + YFGR+IAIDASM++YQF+I + + G + LTN+
Sbjct: 41 MGVLGLSKLLYDRAPGAIKEKELKCYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTND 100
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL R + +A + +A E
Sbjct: 101 AGEVTSHLNGIFFRTLRMIDEGLRPIYVFDGKPPSLKNSELDSRRQRAEEAKHEYEKAKE 160
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ E +EK SKR V+V+++ D+ K LL+LMG+PVV+APSEAEAQCA L + + +AV
Sbjct: 161 EGDDEAMEKMSKRMVRVSREQMDEVKTLLQLMGIPVVQAPSEAEAQCAELVRKDKAWAVG 220
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+L FGA LRHL ++K P+ E+ + ILE +TM+QFIDLCIL GCDY
Sbjct: 221 TEDMDALAFGARVMLRHLTYGEAKKRPIAEYHLEDILELAGMTMEQFIDLCILLGCDYVP 280
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I GIG A + I+++GS+E LE+++ +Y +PE + Y EAR F PE VT E+++
Sbjct: 281 KIPGIGPHKAWEGIKKYGSMEAFLESLDGTKYVVPEGFNYVEARNFFLHPE-VTPGEEIE 339
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I++ PDEEGL+ FLV E FN DRV K I++++ A K +QGRL+ FF
Sbjct: 340 IQFREPDEEGLVKFLVQEKLFNKDRVLKGIQRLRDALAKKTQGRLDQFF 388
>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
Length = 359
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 234/331 (70%), Gaps = 8/331 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V R+ + LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAV-RSDGQQLTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR+ ++++A + EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++A
Sbjct: 60 ELAKRFMRKSEAAEAHEEAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P++E + ++LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L++ QF+DLCIL GCDY D I +G TALKLIR HGS+E ++E I +++Y IPE
Sbjct: 180 LDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPE 239
Query: 274 DWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPY+EAR LF +P+V D KW APD EGL+ FLV E F+ DRV A +++
Sbjct: 240 DWPYKEARELFFDPDVRKADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQK 299
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKE 360
+ Q RLE FFKP+A T A +KRK
Sbjct: 300 NLKTAQQSRLEGFFKPIAKTEQEKAVLKRKH 330
>gi|237836211|ref|XP_002367403.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
gi|211965067|gb|EEB00263.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
gi|221505908|gb|EEE31543.1| flap endonuclease-1, putative [Toxoplasma gondii VEG]
Length = 552
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 178/370 (48%), Positives = 250/370 (67%), Gaps = 14/370 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGL K + D AP+++K Q+ S+ GR IAIDASMS+YQF++ + R G TN+A
Sbjct: 1 MGIKGLGKFVGDFAPRAIKRQEPGSFTGRVIAIDASMSLYQFMVAI-RDGNSFGNFTNDA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G+ TSH+ GM R IRLLE G++P+YVFDG+PP+LK ELAKR R A + +A E
Sbjct: 60 GDCTSHIAGMLNRAIRLLEQGVRPVYVFDGKPPELKSGELAKRRELRESAQEAAEKAREE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E++ K R+V+V+KQHN+D KRLL+LMG+PVVEAP EAEAQCA L K+ +V+A A+
Sbjct: 120 GNVEELRKQIVRSVRVSKQHNEDVKRLLRLMGLPVVEAPCEAEAQCAELTKNRKVWATAT 179
Query: 179 EDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 230
ED D+LTFGA R +R+L S+ ++ ++ +LEEL + +QFID CIL
Sbjct: 180 EDADALTFGATRLIRNLTFGERASGSGASATASGILVIDLPTLLEELQFSQEQFIDFCIL 239
Query: 231 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
GCDYC +++G+G +TA L+++HGSIE ILE ++ E+ +P+ + +QEAR F+ PE V
Sbjct: 240 CGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDPEK--VPDGFCFQEAREFFRHPE-V 296
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
T +++ + W D +GL FLV EN FN RV I ++K A+ K++Q RLESFF
Sbjct: 297 TPADRVHVAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESFFGATV 356
Query: 351 NTSAPIKRKE 360
S+ + K+
Sbjct: 357 TKSSSLMHKQ 366
>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
Length = 359
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 234/331 (70%), Gaps = 8/331 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V R+ + LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAV-RSDGQQLTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR+ ++++A + EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++A
Sbjct: 60 ELAKRFMRKSEAAEAHEEAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P++E + ++LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L++ QF+DLCIL GCDY D I +G TALKLIR HGS+E ++E I +++Y IPE
Sbjct: 180 LDMDRKQFVDLCILLGCDYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPE 239
Query: 274 DWPYQEARRLFKEPEVVT-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPY+EAR LF +P+V D KW APD EGL+ FLV E F+ DRV A +++
Sbjct: 240 DWPYKEARELFFDPDVRNADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQK 299
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKE 360
+ Q RLE FFKP+A T A +KRK
Sbjct: 300 NLKTAQQSRLEGFFKPIAKTEQEKAVLKRKH 330
>gi|221485037|gb|EEE23327.1| flap endonuclease-1, putative [Toxoplasma gondii GT1]
Length = 552
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 178/370 (48%), Positives = 250/370 (67%), Gaps = 14/370 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGL K + D AP+++K Q+ S+ GR IAIDASMS+YQF++ + R G TN+A
Sbjct: 1 MGIKGLGKFVGDFAPRAIKRQEPGSFTGRVIAIDASMSLYQFMVAI-RDGNSFGNFTNDA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G+ TSH+ GM R IRLLE G++P+YVFDG+PP+LK ELAKR R A + +A E
Sbjct: 60 GDCTSHIAGMLNRAIRLLEQGVRPVYVFDGKPPELKSGELAKRRELRESAQEAAEKAREE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E++ K R+V+V+KQHN+D KRLL+LMG+PVVEAP EAEAQCA L K+ +V+A A+
Sbjct: 120 GNVEELRKQIVRSVRVSKQHNEDVKRLLRLMGLPVVEAPCEAEAQCAELTKNRKVWATAT 179
Query: 179 EDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 230
ED D+LTFGA R +R+L S+ ++ ++ +LEEL + +QFID CIL
Sbjct: 180 EDADALTFGATRLIRNLTFGERSSGSGASATASGILVIDLPTLLEELQFSQEQFIDFCIL 239
Query: 231 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
GCDYC +++G+G +TA L+++HGSIE ILE ++ E+ +P+ + +QEAR F+ PE V
Sbjct: 240 CGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDPEK--VPDGFCFQEAREFFRHPE-V 296
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
T +++ + W D +GL FLV EN FN RV I ++K A+ K++Q RLESFF
Sbjct: 297 TPADRVHVAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESFFGATV 356
Query: 351 NTSAPIKRKE 360
S+ + K+
Sbjct: 357 TKSSSLMHKQ 366
>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
Length = 370
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 173/333 (51%), Positives = 232/333 (69%), Gaps = 9/333 (2%)
Query: 25 SYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIY 84
++FGRK+AIDASMS+YQFLI V + LTNEAGE TSHL GMF RT+R+++ G+KP Y
Sbjct: 13 AFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDNGIKPCY 72
Query: 85 VFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKR 144
VFDG+PPDLK EL KR S+R + LAEA K E+ R VKV+K+HN++ ++
Sbjct: 73 VFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQER---RLVKVSKEHNEEAQK 129
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L + P LRHL ++K P
Sbjct: 130 LLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEP 189
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
+ E + +L L+LT++QF+DLCI+ GCDYC+SIRG+G TALKLI+ HGSIE I+E I
Sbjct: 190 IHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKIVEFI 249
Query: 265 -----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
N +++IPEDWPY++AR LF +PEV+ D ++ +KWS P E+ LI +L + F+
Sbjct: 250 ESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNEINLKWSPPKEKELIEYLCDDKKFS 308
Query: 320 SDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
+RV I ++K QGRL+ FF+ V T
Sbjct: 309 EERVKSGISRLKKGLKSGIQGRLDGFFQVVPKT 341
>gi|226294510|gb|EEH49930.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb18]
Length = 528
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 176/335 (52%), Positives = 236/335 (70%), Gaps = 8/335 (2%)
Query: 35 ASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK 94
+SMSIY FL+ V R+ + L +E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 168 SSMSIYSFLVAV-RSDGQQLMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLK 226
Query: 95 KQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV 154
ELAKR+ ++++A + EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P +
Sbjct: 227 SGELAKRFMRKSEAAEAHEEAKEIGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYI 286
Query: 155 EAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL 214
+AP+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P++E + ++L
Sbjct: 287 DAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVL 346
Query: 215 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQI 271
E L++ QF+DLCIL GCDY D I IG TALKLIR HGS+E ++E I +++Y I
Sbjct: 347 EGLDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVI 406
Query: 272 PEDWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 330
PEDWPY++AR LF +P+V D KW APD EGL+ FLV E F+ DRV A ++
Sbjct: 407 PEDWPYKDARELFFDPDVRKADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARL 466
Query: 331 KAAKNKSSQGRLESFFKPVANTS---APIKRKEPE 362
+ + Q RLE FFKP+A T A +KRK E
Sbjct: 467 QKNLKTAQQSRLEGFFKPIAKTQEEKATLKRKHEE 501
>gi|315047298|ref|XP_003173024.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
gi|311343410|gb|EFR02613.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
Length = 459
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/351 (51%), Positives = 241/351 (68%), Gaps = 6/351 (1%)
Query: 7 TKLLADNAPKSMKEQKFESYFGRKIAI-DASMSIYQFLIVVGRTGTEMLTNEAGEVTSHL 65
++++++NAP ++K + ++ FGRK+AI DASMSIY FLI V R+ + LTNE GE TSHL
Sbjct: 70 SQIISENAPDAVKTGEIKNQFGRKVAIQDASMSIYSFLIAV-RSDGQQLTNETGETTSHL 128
Query: 66 QGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIE 125
GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A + EA E G ED+E
Sbjct: 129 MGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGTTEDVE 188
Query: 126 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
KFS+RTV+VTK+HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V+ ASEDMD+L
Sbjct: 189 KFSRRTVRVTKEHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLC 248
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
F AP LRHL RK P++E + K+LE L + M QF+DLCIL GCDY D I +G
Sbjct: 249 FAAPVLLRHLTFSEQRKEPILEIHLEKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPN 308
Query: 246 TALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWS 301
TALKLIR HG++E ++E + R PY +AR LF P+V D + KW+
Sbjct: 309 TALKLIRDHGTLEKVVEAMRATPRRNTSSRTTGPYLQARELFFNPDVRPADAPECDFKWT 368
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
APD +GL+ FLV E GF+ +RV ++ + Q RLE FFKPVA T
Sbjct: 369 APDVDGLVRFLVEEKGFSEERVRNGAARLTKNLKSAQQSRLEGFFKPVAKT 419
>gi|350631707|gb|EHA20078.1| hypothetical protein ASPNIDRAFT_48158 [Aspergillus niger ATCC 1015]
Length = 359
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/331 (51%), Positives = 231/331 (69%), Gaps = 8/331 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V G +++++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAVRSEGQQLMSD-TGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR++++++AT+ EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++A
Sbjct: 60 ELAKRFARKSEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F P LRHL RK P+ E + + LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL---ENINRERYQIPE 273
L + QFIDLCIL GCDY + I +G TALKLIR HGS+E +L EN ++++ +PE
Sbjct: 180 LGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVPE 239
Query: 274 DWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPY++AR LF P+V ++ + KW APD GL++FLV + GFN DRV +++
Sbjct: 240 DWPYEDARELFLNPDVRDANDPECDFKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQK 299
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKE 360
+ Q RLE FFKPVA T A +KRK
Sbjct: 300 NLKSAQQSRLEGFFKPVARTDEEKASLKRKH 330
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/378 (46%), Positives = 246/378 (65%), Gaps = 7/378 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL ++ P +++ ++ + +FGR++AIDASMS+YQFLI V + L + GE
Sbjct: 1 MGIKGLNSIIQQQVPSAIRPREMKQFFGRRVAIDASMSLYQFLIAVRQADGVQLASADGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR +R + LAE E
Sbjct: 61 TTSHLMGMFYRTLRMVDHGLKPCYVFDGKPPVLKAHELDKRTERRKETEQKLAELTE--- 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +I K +R VKV + H + K+LL LMG+P V+AP EAEAQCA L K G+V+A ASED
Sbjct: 118 QAEIMKHERRLVKVEQWHVAEAKKLLGLMGIPYVDAPGEAEAQCAELAKKGKVFAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK P+ E + +L+ L L+ +Q +DL I+ GCDYC+SI+
Sbjct: 178 MDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLGLSQEQLVDLGIMLGCDYCESIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
G+G TALKLI++HGS+E I+E I+ ++++PE+WPY+EAR LF +P+V+ D E +
Sbjct: 238 GVGPVTALKLIKEHGSLENIVEFISSGGNAKWKVPENWPYKEARALFLQPDVL-DAEGVS 296
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIK 357
+KW P EE LI F+ E GFN DR+ I+K++ QGRL+SFFK T+ +
Sbjct: 297 LKWEEPKEEELIAFMCKEKGFNEDRIKSGIQKLRKGLKGGVQGRLDSFFKVKPKTTEQLA 356
Query: 358 RKEPENTPKATTNKKSKA 375
+ TN+K K
Sbjct: 357 ASARKAQAAKKTNQKGKV 374
>gi|156042752|ref|XP_001587933.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980]
gi|154695560|gb|EDN95298.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 188/381 (49%), Positives = 239/381 (62%), Gaps = 40/381 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDA------------SMSIYQFLIVVGR 48
MGIK L ++ D AP ++KE + ++ FG D SMSIY FLI V R
Sbjct: 1 MGIKQLMAIIKDEAPDAVKEGEIKNQFGCVCTFDVDLYRFQKLIPTRSMSIYSFLIAV-R 59
Query: 49 TGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
+G EMLTNE GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++A A
Sbjct: 60 SGGEMLTNEEGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATA 119
Query: 109 TDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC 168
T+ L EA E G EDIEKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L
Sbjct: 120 TEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQKLLKLMGIPFIIAPTEAEAQCAVLA 179
Query: 169 KSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLC 228
++G+ E RK P+ E + K+L LN+ QF+DLC
Sbjct: 180 RAGKSLCGGDE--------------------QRKEPIQEVILEKVLAGLNMDRKQFVDLC 219
Query: 229 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFK 285
IL GCDY D I +G TALKLIR+HG +ET++ I +ERY IPEDWPYQ+AR LF
Sbjct: 220 ILLGCDYLDPIPKVGPHTALKLIREHGDLETLVAWIKADKKERYTIPEDWPYQDARELFF 279
Query: 286 EPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
P+V D E KW APD EGL+ FLV+E GF+ DRV A +K+ S Q RLE
Sbjct: 280 NPDVRPADHEDCDFKWEAPDIEGLVKFLVAEKGFSEDRVRSAAQKLTKNLKSSQQARLEG 339
Query: 345 FFKPVANTS---APIKRKEPE 362
FFKP+ T A +KRK E
Sbjct: 340 FFKPIPKTDEERASLKRKNDE 360
>gi|225685184|gb|EEH23468.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb03]
Length = 359
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 175/333 (52%), Positives = 234/333 (70%), Gaps = 8/333 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FL+ V R+ + L +E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLVAV-RSDGQQLMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR+ ++++A + EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++A
Sbjct: 60 ELAKRFMRKSEAAEAHEEAKEIGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P++E + ++LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L++ QF+DLCIL GCDY D I IG TALKLIR HGS+E ++E I +++Y IPE
Sbjct: 180 LDMDRKQFVDLCILLGCDYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPE 239
Query: 274 DWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPY++AR LF +P+V D KW APD EGL+ FLV E F+ DRV A +++
Sbjct: 240 DWPYKDARELFFDPDVRKADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQK 299
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKEPE 362
+ Q RLE FFKP+A T A +KRK E
Sbjct: 300 NLKTAQQSRLEGFFKPIAKTQEEKATLKRKHEE 332
>gi|367047833|ref|XP_003654296.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
gi|347001559|gb|AEO67960.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
Length = 359
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/322 (52%), Positives = 225/322 (69%), Gaps = 5/322 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V R+ + L NE+G+ TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAV-RSDGQQLMNESGDTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELA+R+ ++ +A + L EA E G ED+EKFS+RTV+VTK+HN +C+RLL+LMG+P + A
Sbjct: 60 ELARRFQRKQEANEGLEEAKETGTAEDVEKFSRRTVRVTKEHNAECQRLLRLMGIPYIVA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F P LRHL RK P+ E +AK+LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFDTPILLRHLTFSEQRKEPIQEIHLAKVLEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPE 273
LN+ QF+DLCIL GCDY D I +G TALKLIR+HG++E ++E N + RY IP+
Sbjct: 180 LNMDRKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGTLEKVVEFMRNDPKGRYTIPD 239
Query: 274 DWPYQEARRLFKEPEVVTDEEQL-QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWP+Q+AR LF P+V ++ L KW PD EGL+ FLV E GF+ DRV +++
Sbjct: 240 DWPFQDARELFFSPDVRQPDDPLCDFKWDKPDIEGLVQFLVHEKGFSEDRVRAGGARLEK 299
Query: 333 AKNKSSQGRLESFFKPVANTSA 354
S Q R+E FFK + T A
Sbjct: 300 NLKSSQQARIEGFFKVLPKTEA 321
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 173/346 (50%), Positives = 239/346 (69%), Gaps = 5/346 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KLL +N+ +KE+ Y ++IAIDASMSIYQFLI V G+ + + +A
Sbjct: 1 MGIKQLSKLLKENSANGIKERPLAYYSSKRIAIDASMSIYQFLIAVRSDGSMLGSGDA-- 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA EAG+
Sbjct: 59 TTSHLVGLFYRTIRMVELGITPVYVFDGAPPEIKMKELGKRNERRAMADKEYREASEAGD 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K +E + KR KVT H ++CKRLL LMG+P APSEAEA CA LC+ VY VA+ED
Sbjct: 119 KRLMEMYDKRKTKVTGVHVEECKRLLGLMGIPFETAPSEAEAYCAFLCRKRIVYGVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+P LR+ S+K+PV+E+ + ++LE+L+L ++FIDLCIL GCDYCD+++
Sbjct: 179 MDSLTFGSPVVLRNFSGAQSKKLPVVEYNLRQLLEDLSLEQNEFIDLCILLGCDYCDTLK 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + AL LIR+H SIE IL+ E +P W Y+EA+++F + D + I W
Sbjct: 239 GIGPKKALGLIRKHRSIERILQE---ENLDVPGGWGYEEAQKIFMNLGEIGDSREFNISW 295
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
S+ D+ G++ FLV E GF+ +RV K +EK+ ++ KS QGRL+ F
Sbjct: 296 SSIDKSGIVKFLVEEKGFDLERVNKGVEKLINSRKKSMQGRLDGFI 341
>gi|327306185|ref|XP_003237784.1| flap endonuclease [Trichophyton rubrum CBS 118892]
gi|326460782|gb|EGD86235.1| flap endonuclease [Trichophyton rubrum CBS 118892]
Length = 447
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 176/325 (54%), Positives = 228/325 (70%), Gaps = 5/325 (1%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A SMSIY FLI V R+ + LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP
Sbjct: 84 AYCGSMSIYSFLIAV-RSDGQQLTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPP 142
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
LK ELAKR ++A+A + EA E G ED+EKFS+RTV+VTK+HN +CKRLL+LMG+
Sbjct: 143 KLKSGELAKRTMRKAEAQEAAEEAKETGTTEDVEKFSRRTVRVTKEHNAECKRLLELMGI 202
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 211
P ++AP+EAEAQCA L ++G+V+ ASEDMD+L F AP LRHL RK P++E +
Sbjct: 203 PYLDAPTEAEAQCAVLARAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLD 262
Query: 212 KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RER 268
K+LE L + M QF+DLCIL GCDY D I +G TALK+IR HG++E ++E I +++
Sbjct: 263 KVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKK 322
Query: 269 YQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
Y IP+DWPY +AR LF P+V D + KWSAPD EGL+ FLV E GF+ DRV
Sbjct: 323 YVIPDDWPYLQARELFFNPDVRPADAPECDFKWSAPDVEGLVRFLVEEKGFSEDRVRNGA 382
Query: 328 EKIKAAKNKSSQGRLESFFKPVANT 352
++ + Q RLE FFKPVA T
Sbjct: 383 ARLTKNLKSAQQSRLEGFFKPVAKT 407
>gi|302504898|ref|XP_003014670.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
gi|291177976|gb|EFE33767.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
Length = 359
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 175/320 (54%), Positives = 225/320 (70%), Gaps = 5/320 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V R+ + LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAV-RSDGQQLTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR ++A+A + EA E G ED+EKFS+RTV+VTK+HN +CKRLL LMG+P ++A
Sbjct: 60 ELAKRTMRKAEAQEAAEEAKETGTTEDVEKFSRRTVRVTKEHNAECKRLLGLMGIPYLDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L K+G+V+ ASEDMD+L F AP LRHL RK P++E + K+LE
Sbjct: 120 PTEAEAQCAVLAKAGKVFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L + M QF+DLCIL GCDY D I +G TALK+IR HG++E ++E I +++Y IP+
Sbjct: 180 LGMDMTQFVDLCILLGCDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIPD 239
Query: 274 DWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPY +AR LF P+V D + KWSAPD EGL+ FLV E GF+ DRV ++
Sbjct: 240 DWPYLQARELFFNPDVRPADAPECDFKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTK 299
Query: 333 AKNKSSQGRLESFFKPVANT 352
+ Q RLE FFKPVA T
Sbjct: 300 NLKSAQQSRLEGFFKPVAKT 319
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 235/352 (66%), Gaps = 9/352 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L L+++ P ++K + + + GRK+AIDASMS+YQFLI V + L E GE
Sbjct: 1 MGIKNLATLISEQVPNAIKSRDIKYFHGRKVAIDASMSLYQFLIAVRQQDGVQLAGEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP YVFDG PP+LKK EL KR +R D L EA E
Sbjct: 61 TTSHLMGMFYRTLRMIDHGIKPCYVFDGSPPELKKYELDKRKVRREDTEAKLKEATEQA- 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+I K +R VKV HN++ ++LL LMG+P V AP+EAEAQCA L KSG+V+A ASED
Sbjct: 120 --EIIKHERRLVKVLPWHNEEAQKLLSLMGIPYVVAPAEAEAQCAELAKSGKVFAAASED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ EF+ I L+LT QFIDL I+ GCDYC+ I+
Sbjct: 178 MDTLCYQTPVLLRHLTFSEARKLPIQEFDTDVIYNTLDLTQTQFIDLGIILGCDYCEGIK 237
Query: 241 GIGGQTALKLIRQHGSIETILE-----NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
G+G ALKLI++HGS+E I+E +I+ R++IPE W ++EAR LF +P+V+ EE
Sbjct: 238 GVGPVNALKLIKEHGSLEAIVEKFENGDISSGRWKIPEGWQFKEARDLFMQPDVIPSEE- 296
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ +KW P E LI F+V E GFN DR+ IE+++ Q RL+SFFK
Sbjct: 297 VTLKWEEPKAEELIEFMVKEKGFNEDRIKSGIERLRKGLKVGVQKRLDSFFK 348
>gi|302652986|ref|XP_003018331.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
gi|291181960|gb|EFE37686.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
Length = 376
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 177/351 (50%), Positives = 236/351 (67%), Gaps = 24/351 (6%)
Query: 6 LTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHL 65
L +++++NAP ++K + ++ FGRK+AI LTNE+GE TSHL
Sbjct: 6 LYQIISENAPDAVKSGEIKNQFGRKVAI--------------------LTNESGETTSHL 45
Query: 66 QGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIE 125
GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A + EA E G ED+E
Sbjct: 46 MGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGTTEDVE 105
Query: 126 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
KFS+RTV+VTK+HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V+ ASEDMD+L
Sbjct: 106 KFSRRTVRVTKEHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLC 165
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
F AP LRHL RK P++E + K+LE L + M QF+DLCIL GCDY D I +G
Sbjct: 166 FAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPN 225
Query: 246 TALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWS 301
TALK+IR HG++E ++E I +++Y IP+DWPY +AR LF P+V D + KWS
Sbjct: 226 TALKMIRDHGTLEKVVEAIQSDPKKKYVIPDDWPYLQARELFFNPDVRPADAPECDFKWS 285
Query: 302 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
APD EGL+ FLV E GF+ DRV ++ + Q RLE FFKPVA T
Sbjct: 286 APDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPVAKT 336
>gi|317376215|sp|A5DCF5.3|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 374
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 244/353 (69%), Gaps = 5/353 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +L+ ++AP++ +E + ++ FGRK+AIDASM +YQ+LI V ++ + LT+E GE
Sbjct: 1 MGVKGLNQLIKEHAPEAFREFQLKNLFGRKVAIDASMCLYQYLIAVRQSDGQQLTSEDGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIRL+E G+KP+YVFDG+PP LK EL KR ++ +A + +
Sbjct: 61 TTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALKQQEDIKDTAT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ ++ KR+V+VTK+ N++ K+LL+LMG+P V+AP EAEAQCA L +G+V+A ASED
Sbjct: 121 VEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L + P LRHL +RK+P+ + + K +E L + FIDLCIL GCDYC++I+
Sbjct: 181 MDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCETIK 240
Query: 241 GIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
G+G TA KLI++HGS++ I+ EN + ++++PE+WPY EAR LF P+V +E +
Sbjct: 241 GVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKVPENWPYAEARELFLNPDVSPGKE-I 299
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
+KW P + L+ F+V + GF+ DRV EK+K QGRL+ FF V
Sbjct: 300 NLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVV 352
>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
gi|317376188|sp|B3L014.1|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
Length = 595
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/376 (47%), Positives = 251/376 (66%), Gaps = 16/376 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+I+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VTK+ N++ K+LL LMG+PVVEAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL------------MDPSSRKIPVMEFEVAKILEELNLTMDQFID 226
ED D+L FG +R+L + S R + E + ++L+ LNL M++FID
Sbjct: 180 EDADALVFGTKILIRNLNANASSTSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFID 239
Query: 227 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
CIL GCDYCD+I+GIG +TA LI+++ SIE I+ENI++ +YQIP ++ + EAR F
Sbjct: 240 FCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQIPSNFRFVEARDSFIN 299
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P+V++ EE ++I W P E L NFL+ + FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 PKVLSKEE-IKIDWGEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFF 358
Query: 347 KPVANTSAPIKRKEPE 362
S + +E +
Sbjct: 359 TACTKKSTKLVNEESQ 374
>gi|389582194|dbj|GAB64749.1| flap exonuclease [Plasmodium cynomolgi strain B]
Length = 624
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/388 (46%), Positives = 257/388 (66%), Gaps = 16/388 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+I+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VTK+ N++ K+LL LMG+PVVEAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL------------MDPSSRKIPVMEFEVAKILEELNLTMDQFID 226
ED D+L FG +R+L + S R + E + ++L+ LNL+M++FID
Sbjct: 180 EDADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFID 239
Query: 227 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
CIL GCDYCD+I+GIG +TA LI+++ SIE I+ENI++ +YQ+P ++ + EAR F
Sbjct: 240 FCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEARDSFIN 299
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P+V++ EE ++I W P E L NFL+ + FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 PKVLSKEE-VKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFF 358
Query: 347 KPVANTSAPIKRKEPENTPKATTNKKSK 374
S + +E + + T +K K
Sbjct: 359 TACTKKSTKLIIEESQTQKEVKTKRKGK 386
>gi|74824687|sp|Q9GZ01.1|FEN1_PLAFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|9885425|gb|AAG01445.1| flap endonuclease-1 [Plasmodium falciparum]
Length = 650
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/398 (45%), Positives = 260/398 (65%), Gaps = 17/398 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K ES GR IAIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L ++ R + E + ++L+ LNLTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKSFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
V+ E+ ++I W+ P E L +FL+ + FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 NVLPKED-IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Query: 348 PVANTSAP--IKRKEPENTPKATTNKKSKAGGGGGRKR 383
S ++ + E T A KK G +++
Sbjct: 359 ACTKKSTKLIVEETKKEQTLPARKGKKRPTAGDKNKQK 396
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/346 (49%), Positives = 240/346 (69%), Gaps = 5/346 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KLL +N+ K +KE+ Y +++AIDASMSIYQFLI V G+ + +
Sbjct: 1 MGIKQLSKLLKENSVKGIKERPLAYYSSKRVAIDASMSIYQFLIAVRSDGSTLGNGDT-- 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + +A EAG+
Sbjct: 59 TTSHLVGLFYRTIRMVELGITPVYVFDGVPPEVKMKELGKRNERRATADKEYKDASEAGD 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K +E + KR KVT H ++CKRLL LMG+P APSEAEA CA LCK VY VA+ED
Sbjct: 119 KRLMEMYDKRKTKVTGIHVEECKRLLGLMGIPFETAPSEAEAYCALLCKKRAVYGVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+P LR+ S+K+PV+E+ + ++LE+L+L D+FIDLCIL GCDYCD+++
Sbjct: 179 MDSLTFGSPVVLRNFSGTRSKKLPVVEYNLRQLLEDLSLDQDEFIDLCILLGCDYCDTLK 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + AL LI++H SIE IL+ N E P++W Y++A+++F+ + D ++ I W
Sbjct: 239 GIGPKKALGLIKKHRSIERILQEENLE---TPDEWRYEDAQKIFRNLAEIGDAKEFNISW 295
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ D G++ FLV E GF+ +RV K ++K+ + KS+QGRL+ F
Sbjct: 296 KSIDRNGIVKFLVEEKGFDLERVNKGVDKLINSGRKSTQGRLDGFI 341
>gi|124505315|ref|XP_001351399.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
gi|74876406|sp|Q7K734.1|FEN1_PLAF7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|11559508|gb|AAG37989.1|AF093702_1 flap endonuclease 1 [Plasmodium falciparum]
gi|6562723|emb|CAB62862.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
Length = 672
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/398 (45%), Positives = 260/398 (65%), Gaps = 17/398 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K ES GR IAIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L ++ R + E + ++L+ LNLTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKSFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
V+ +E ++I W+ P E L +FL+ + FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 NVLP-KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Query: 348 PVANTSAP--IKRKEPENTPKATTNKKSKAGGGGGRKR 383
S ++ + E T A KK G +++
Sbjct: 359 ACTKKSTKLIVEETKKEQTLPARKGKKRPTAGDKNKQK 396
>gi|169599851|ref|XP_001793348.1| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
gi|160705335|gb|EAT89482.2| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 244/367 (66%), Gaps = 28/367 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +L+ +++P ++K + ++ FGRK+AI L +E GE
Sbjct: 1 MGIKHLYQLIQEHSPDAIKTGEIKNQFGRKVAI--------------------LMSETGE 40
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A EA E G
Sbjct: 41 TTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAHAAAEEAKETGT 100
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L + G+VYA ASED
Sbjct: 101 AEDVEKFSRRTVRVTREHNEECRRLLKLMGIPFIIAPTEAEAQCATLARGGKVYAAASED 160
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ--FIDLCILSGCDYCDS 238
MD+LTF P LRHL RK P++E + K+LE L + +Q FIDLCIL GCDY D
Sbjct: 161 MDTLTFNTPILLRHLTFSEQRKEPILEIHLDKVLEGLEMEREQPQFIDLCILLGCDYLDP 220
Query: 239 IRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVV-TDEEQ 295
I+GIG TALKLIR H ++E ++ +I ++++ +PEDWP+ +AR+LF EP+V D +
Sbjct: 221 IKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTLPEDWPFADARQLFLEPDVCPADAPE 280
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT--- 352
KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKPV T
Sbjct: 281 CDFKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFFKPVERTPEE 340
Query: 353 SAPIKRK 359
A +KRK
Sbjct: 341 KASLKRK 347
>gi|156094601|ref|XP_001613337.1| flap exonuclease [Plasmodium vivax Sal-1]
gi|317376189|sp|A5KAL1.1|FEN1_PLAVS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148802211|gb|EDL43610.1| flap exonuclease, putative [Plasmodium vivax]
Length = 623
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 182/391 (46%), Positives = 257/391 (65%), Gaps = 16/391 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+I+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VT++ N++ K+LL LMG+PVVEAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL------------MDPSSRKIPVMEFEVAKILEELNLTMDQFID 226
ED D+L FG +R+L + S R + E + ++L+ LNL+M++FID
Sbjct: 180 EDADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFID 239
Query: 227 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
CIL GCDYCD+I+GIG +TA LI+++ SIE I+ENI++ +YQ+P ++ + EAR F
Sbjct: 240 FCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEARDSFIN 299
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P+V+ EE ++I W P E L NFL+ + FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 PKVLPKEE-VKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRRLDNFF 358
Query: 347 KPVANTSAPIKRKEPENTPKATTNKKSKAGG 377
S + +E ++ K KSK G
Sbjct: 359 TACTKKSTKLVIEESQSQSKTQKEAKSKRKG 389
>gi|353235791|emb|CCA67798.1| probable DNA repair endonuclease rad2 [Piriformospora indica DSM
11827]
Length = 366
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 176/370 (47%), Positives = 243/370 (65%), Gaps = 26/370 (7%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIYQFLI V + E L NE GE TSHL G F RTIR++E G+KP YVFDG+PP+LK
Sbjct: 1 MSIYQFLIAVRQRDGETLQNEQGETTSHLMGFFYRTIRMVENGIKPCYVFDGKPPELKSG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
LAKR+ +R +A ++ EA E G E++EKFS+R V+VTK+HN++C++LL LMG+PVV A
Sbjct: 61 VLAKRFERREEAKEEGDEAKEVGTTEEVEKFSRRQVRVTKEHNEECRKLLGLMGIPVVVA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
PSEAEAQCA L + G VY SEDMD+LTF +P LRHL +RK P++E + +LE
Sbjct: 121 PSEAEAQCAELARGGLVYGAGSEDMDTLTFNSPILLRHLTFSENRKEPILEISLPAVLEG 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-------- 268
L + M QF++LCIL GCDY + I+G+G ++ALKL+R+HGS+ ++E++ ++
Sbjct: 181 LEMDMPQFVELCILLGCDYLEPIKGVGPKSALKLLREHGSLGAVVEHLRSKQASREDADE 240
Query: 269 ----------YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
+PE+WP++ A+ LF +P+ VT + +++W APD +GL+ FLV+E GF
Sbjct: 241 EGEGKKKKGGVHVPEEWPWERAKDLFLQPD-VTPADSFELEWKAPDLDGLVQFLVTEKGF 299
Query: 319 NSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAG-- 376
N DRV K EK+ QGRL+SFFK VA + P K++ + P K KAG
Sbjct: 300 NEDRVRKGAEKLTKHIGAKQQGRLDSFFK-VAPKAVPEKKE--KGAPVGGKGTKRKAGEQ 356
Query: 377 --GGGGRKRK 384
G +KRK
Sbjct: 357 DASGSKKKRK 366
>gi|37719664|gb|AAR01941.1| flap endonuclease 1 [Plasmodium falciparum]
Length = 648
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 182/398 (45%), Positives = 260/398 (65%), Gaps = 17/398 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K ES GR IAIDASMS+YQF+I + R + LTNE+
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAI-RDSEQYGNLTNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L ++ R + E + ++L+ LNLTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKPFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
V+ E+ ++I W+ P E L +FL+ + FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 NVLPKED-IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFT 358
Query: 348 PVANTSAP--IKRKEPENTPKATTNKKSKAGGGGGRKR 383
S ++ + E T A KK G +++
Sbjct: 359 ACTKKSTKLIVEETKKEQTLPARKGKKRPPAGDKNKQK 396
>gi|70942151|ref|XP_741275.1| flap exonuclease [Plasmodium chabaudi chabaudi]
gi|74978262|sp|Q4XXP8.1|FEN1_PLACH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56519555|emb|CAH78313.1| flap exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 479
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 176/369 (47%), Positives = 249/369 (67%), Gaps = 15/369 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R G + L NEA
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDGDQYGNLMNEA 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLLKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYDMAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L + S R + E + ++L+ L LTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P+++ Y EAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPDNFKYVEARQSFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 KVL-EKSEVKIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
Query: 348 PVANTSAPI 356
S +
Sbjct: 359 TCTKKSTKL 367
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 173/346 (50%), Positives = 235/346 (67%), Gaps = 5/346 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KLL +N+ + ++E+ Y +K+AIDASMS+YQFLI V R+G L NE
Sbjct: 1 MGIKQLSKLLRENSKRGIRERPLVYYSSKKVAIDASMSMYQFLIAV-RSGGATLGNEDSP 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA E G+
Sbjct: 60 -TSHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAADREYREASEVGD 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE +E + KR KVT H D+CKRLL LMG+P APSEAEA CA LCK VY VA+ED
Sbjct: 119 KELMEMYDKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LR+ S+++PVME + +ILE+L+L +FIDLCIL GCDYC +++
Sbjct: 179 MDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCSTLK 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + AL LI++H SI IL+N E ++P DW Y +A+++F + D I W
Sbjct: 239 GIGPKKALGLIKKHRSIGNILKN---EDLEVPGDWRYSDAQKIFGSLAEIGDIRDFNISW 295
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ D G++NFLV E GF+ +RV K I+K+ ++ K +QGRL+ F
Sbjct: 296 DSIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGTQGRLDCFM 341
>gi|326478513|gb|EGE02523.1| flap endonuclease [Trichophyton equinum CBS 127.97]
Length = 353
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/325 (53%), Positives = 233/325 (71%), Gaps = 9/325 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK ++++NAP ++K + ++ FGR++AIDA IY FLI V R+ + LTNE+GE
Sbjct: 1 MGIKSEC-IISENAPDAVKSGEIKNQFGRRVAIDA---IYSFLIAV-RSDGQQLTNESGE 55
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A + EA E G
Sbjct: 56 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGT 115
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+EKFS+RTV+VT++HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V+ ASED
Sbjct: 116 TEDVEKFSRRTVRVTREHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKVFGAASED 175
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GCDY D I
Sbjct: 176 MDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIP 235
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+G TALK+IR HG++E ++E I +++Y IPEDWPY +AR LF P+V D +
Sbjct: 236 KVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPEDWPYLQARELFFNPDVRPADAPEC 295
Query: 297 QIKWSAPDEEGLINFLVSENGFNSD 321
KWSAPD EGL+ FLV E GF+ D
Sbjct: 296 DFKWSAPDVEGLVRFLVEEKGFSED 320
>gi|68062082|ref|XP_673044.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490604|emb|CAI01886.1| hypothetical protein PB300433.00.0 [Plasmodium berghei]
Length = 375
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 175/369 (47%), Positives = 249/369 (67%), Gaps = 15/369 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R G + L NE+
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDGDQYGNLMNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L + S R + E + ++L+ L LTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P ++ Y EAR+ F +P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQSFIKP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 KVL-EKSEVKIDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
Query: 348 PVANTSAPI 356
S +
Sbjct: 359 TCTKKSTKL 367
>gi|298706804|emb|CBJ29727.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 476
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 216/287 (75%), Gaps = 6/287 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV---GRTGTEMLTNE 57
MGI GLTKLL+D AP MKE +S GRK+A+DASM++YQFLI V G ++MLTNE
Sbjct: 1 MGIHGLTKLLSDEAPNCMKEVDLDSLTGRKVAVDASMAMYQFLIAVRSGGEGQSQMLTNE 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
AGEVTSH+QGMF RTIR+L G+KP Y+FDG+PP LK ELAKR +KRA A +L A E
Sbjct: 61 AGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
A +K D++KFSKR V+VT+ HN+DCK+LL LMGVPVV APSEAEAQCAAL + G VY A
Sbjct: 121 ADDKNDVDKFSKRLVRVTRDHNEDCKKLLSLMGVPVVTAPSEAEAQCAALAREGVVYGTA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTF P+ LR + S + P++E + K+L+ L L+ ++F+DLC+L GCDY
Sbjct: 181 TEDMDALTFQTPKLLRRMTFSGSNQ-PILEVDYQKLLQGLELSHEKFVDLCVLCGCDYTG 239
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARR 282
SI+GIG + AL L+RQHG+IE I+++++ ++Y +P+DW P + A R
Sbjct: 240 SIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWLEPAERAER 286
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 267 ERYQIPEDWP--YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
E Q +D P Y++AR LF +PEV E ++KW+ PDE GLI FLV E GFN++RV
Sbjct: 366 ESEQEMDDTPPMYRQARGLFLKPEVEPAGE-YKLKWTDPDEPGLIKFLVEEKGFNAERVA 424
Query: 325 KAIEKIKAAKNKSSQGRLESFFKPVAN 351
I K+K A+ SQ R++SFF + N
Sbjct: 425 SGIVKLKGARKNVSQKRMDSFFSVIPN 451
>gi|224006087|ref|XP_002292004.1| exonuclease [Thalassiosira pseudonana CCMP1335]
gi|317376197|sp|B8C6S5.1|FEN1_THAPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220972523|gb|EED90855.1| exonuclease [Thalassiosira pseudonana CCMP1335]
Length = 390
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/359 (53%), Positives = 248/359 (69%), Gaps = 11/359 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV------GRTGTEML 54
MGIKGL KLL+D AP S+KE GRK+AIDASM+IYQFLI V G+ ML
Sbjct: 1 MGIKGLAKLLSDEAPLSLKEVPLSHLHGRKLAIDASMAIYQFLIAVRSGGPGGQNAAMML 60
Query: 55 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 114
TN GE TSH+QG+F RTIR + G++P+YVFDG+PP K EL KR KR A L
Sbjct: 61 TNADGETTSHIQGIFNRTIRFISEGIRPVYVFDGKPPQFKSGELLKRREKRLKAEQALKA 120
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
A E+GN E+ +K SKR V+ + N+DC +LL LMGVPV+ AP EAEAQ AAL +SG+VY
Sbjct: 121 AEESGNIEEQDKQSKRLVRAGTKENEDCIKLLTLMGVPVIRAPCEAEAQAAALARSGKVY 180
Query: 175 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 234
A A+EDMD+LTF +P +R + ++ K V + K +E L +T DQF+DLCIL GCD
Sbjct: 181 AAATEDMDALTFRSPVMVRKMTFANASKSDVQQIFYDKAIEGLEITHDQFVDLCILLGCD 240
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 294
YCD+I+GIG +TALKLIR+H +IETIL+++NRE+Y +P+ Y EARRLF EV+ D E
Sbjct: 241 YCDTIKGIGPKTALKLIREHKNIETILKHLNREKYVVPD--IYVEARRLFNHHEVLPDNE 298
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS--QGRLESFFKPVAN 351
+++KW+ E L +FLV E GFN DRV +IEK++ A S+ Q R++SFFK AN
Sbjct: 299 -IELKWTECQPEPLKSFLVDEMGFNPDRVQASIEKLQKAFKASAKPQSRMDSFFKVKAN 356
>gi|83286314|ref|XP_730108.1| Flap endonuclease-1 [Plasmodium yoelii yoelii 17XNL]
gi|74882336|sp|Q7RME3.1|FEN1_PLAYO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|23489735|gb|EAA21673.1| flap endonuclease-1-related [Plasmodium yoelii yoelii]
Length = 480
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/369 (47%), Positives = 247/369 (66%), Gaps = 15/369 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R G + L NE+
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDGDQYGNLMNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A
Sbjct: 60 GETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKAE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K +A A+
Sbjct: 120 GNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATAT 179
Query: 179 EDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L + S R + E + ++L+ L LTMD+FID
Sbjct: 180 EDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P ++ Y EAR+ F P
Sbjct: 240 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQSFINP 299
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL++FF
Sbjct: 300 KVL-EKSEVKIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 358
Query: 348 PVANTSAPI 356
S +
Sbjct: 359 TCTKKSTKL 367
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 235/346 (67%), Gaps = 5/346 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KLL +N+ + ++E+ Y +K+AIDASMS+YQFLI V R+G L NE
Sbjct: 1 MGIKQLSKLLRENSKRGIRERPLVYYSSKKVAIDASMSMYQFLIAV-RSGGATLGNEDSP 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA E G+
Sbjct: 60 -TSHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAADREYREASEVGD 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE +E + KR KVT H D+CKRLL LMG+P APSEAEA CA LCK VY VA+ED
Sbjct: 119 KELMEMYDKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LR+ S+++PVME + +ILE+L+L +FIDLCIL GCDYC +++
Sbjct: 179 MDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCSTLK 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + AL LI++H SI IL+N E ++P DW Y +A+++F + + I W
Sbjct: 239 GIGPKKALGLIKKHRSIGNILKN---EDLEVPGDWRYSDAQKIFGSLAEIGEIRDFNISW 295
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ D G++NFLV E GF+ +RV K I+K+ ++ K +QGRL+ F
Sbjct: 296 DSIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGTQGRLDCFI 341
>gi|83773193|dbj|BAE63320.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/333 (52%), Positives = 232/333 (69%), Gaps = 8/333 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIY FLI V G +++++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 1 MSIYSFLIAVRSEGQQLMSD-TGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 59
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR +++A+AT+ EA E G ED+EKFS+RTV+VT+ HN +CK+LLKLMG+P ++A
Sbjct: 60 ELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTRDHNAECKKLLKLMGIPYIDA 119
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F AP LRHL RK P++E +++ LE
Sbjct: 120 PTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLSRALEG 179
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L++ QFIDLCIL GCDY + I +G TALKLIR+ GS+E ++E++ +++Y IPE
Sbjct: 180 LDMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIPE 239
Query: 274 DWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
DWPYQ+AR LF P+V KW APD EGL+ FLV + GFN DRV +++
Sbjct: 240 DWPYQDARELFLNPDVREASHPDCDFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQK 299
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKEPE 362
+ Q RLE FFKPVA T A +KRK E
Sbjct: 300 NLKTAQQSRLEGFFKPVARTDEEKANLKRKHDE 332
>gi|159128014|gb|EDP53129.1| Flap endonuclease, putative [Aspergillus fumigatus A1163]
Length = 394
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 177/333 (53%), Positives = 230/333 (69%), Gaps = 8/333 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M IY FLI V R+ + L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 36 MYIYSFLIAV-RSEGQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 94
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR +++A+AT+ EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++A
Sbjct: 95 ELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDA 154
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F AP LRHL RK P+ E + + LE
Sbjct: 155 PTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEG 214
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L + QFIDLCIL GCDY + I +G TALKLIR+HGS+E ++E I +++Y IPE
Sbjct: 215 LGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPE 274
Query: 274 DWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
WPYQ+AR LF P+V D + KW APD E L+ FLV + GFN DRV +++
Sbjct: 275 YWPYQDARELFLHPDVREADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQK 334
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKEPE 362
+ Q RLE FFKPVA T A +KRK E
Sbjct: 335 NLKTAQQSRLEGFFKPVARTDEEKASLKRKHDE 367
>gi|71000637|ref|XP_755000.1| Flap endonuclease Rad27 [Aspergillus fumigatus Af293]
gi|66852637|gb|EAL92962.1| Flap endonuclease Rad27, putative [Aspergillus fumigatus Af293]
Length = 394
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 177/333 (53%), Positives = 230/333 (69%), Gaps = 8/333 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M IY FLI V R+ + L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK
Sbjct: 36 MYIYSFLIAV-RSEGQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG 94
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
ELAKR +++A+AT+ EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++A
Sbjct: 95 ELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDA 154
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P+EAEAQCA L ++G+VYA ASEDMD+L F AP LRHL RK P+ E + + LE
Sbjct: 155 PTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEG 214
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPE 273
L + QFIDLCIL GCDY + I +G TALKLIR+HGS+E ++E I +++Y IPE
Sbjct: 215 LGMDRKQFIDLCILLGCDYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPE 274
Query: 274 DWPYQEARRLFKEPEVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
WPYQ+AR LF P+V D + KW APD E L+ FLV + GFN DRV +++
Sbjct: 275 YWPYQDARELFLHPDVREADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQK 334
Query: 333 AKNKSSQGRLESFFKPVANTS---APIKRKEPE 362
+ Q RLE FFKPVA T A +KRK E
Sbjct: 335 NLKTAQQSRLEGFFKPVARTDEEKASLKRKHDE 367
>gi|171679661|ref|XP_001904777.1| hypothetical protein [Podospora anserina S mat+]
gi|170939456|emb|CAP64684.1| unnamed protein product [Podospora anserina S mat+]
Length = 379
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/351 (48%), Positives = 235/351 (66%), Gaps = 21/351 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L +++ D AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L NE G+
Sbjct: 1 MGIKNLFQIIKDEAPDAVKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNEDGQ 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAHEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+VYA ASED
Sbjct: 120 AEEVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F +P LRHL RK P+ E VAK+LE L + D I
Sbjct: 180 MDTLCFDSPILLRHLTFSEQRKEPIQEIHVAKVLEGLGM----------------LDPIP 223
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV-VTDEEQL 296
+ TALKLIR+H ++E +++ + + +Y IPEDWP+++AR LF P+V D+
Sbjct: 224 KVDPSTALKLIREHKTLEGVVKFMKEDPKSKYVIPEDWPFEDARDLFFNPDVRQADDPLC 283
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
KW PD EGL+ FLV E GF+ DRV A +++ S Q R+E FFK
Sbjct: 284 DFKWEKPDIEGLVQFLVKEKGFSEDRVRGAAARLEKNMKSSQQSRIEGFFK 334
>gi|68074223|ref|XP_679026.1| flap exonuclease [Plasmodium berghei strain ANKA]
gi|74991237|sp|Q4Z015.1|FEN1_PLABA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56499663|emb|CAH96377.1| flap exonuclease, putative [Plasmodium berghei]
Length = 478
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 174/369 (47%), Positives = 248/369 (67%), Gaps = 16/369 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGLTK +AD AP ++KE K E+ GR +AIDASMS+YQF+I + R G + L NE+
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAI-RDGDQYGNLMNES 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L +A E
Sbjct: 60 GETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
N E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K +A A+
Sbjct: 120 -NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATAT 178
Query: 179 EDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMDQFIDL 227
ED D+L FG +R+L +S R + E + ++L+ L LTMD+FID
Sbjct: 179 EDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDF 238
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P ++ Y EAR+ F +P
Sbjct: 239 CILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQSFIKP 298
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL++FF
Sbjct: 299 KVL-EKSEVKIDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKVTTQRRLDTFFT 357
Query: 348 PVANTSAPI 356
S +
Sbjct: 358 TCTKKSTKL 366
>gi|154292277|ref|XP_001546714.1| hypothetical protein BC1G_14593 [Botryotinia fuckeliana B05.10]
Length = 302
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/303 (55%), Positives = 215/303 (70%), Gaps = 16/303 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFG------------RKIAIDASMSIYQFLIVVGR 48
MGIK L ++ D AP ++KE + ++ FG + + SMSIY FLI V R
Sbjct: 1 MGIKQLMSIIKDEAPDAVKEGEIKNQFGCVYTSYNHIYTFQNLIYFRSMSIYSFLIAV-R 59
Query: 49 TGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
+G EMLTNE GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++A A
Sbjct: 60 SGGEMLTNEDGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATA 119
Query: 109 TDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC 168
T+ L EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCAAL
Sbjct: 120 TEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAALA 179
Query: 169 KSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLC 228
++G+VYA ASEDMD+L F +P LRHL RK P+ E + K+L LN+ QF+DLC
Sbjct: 180 RAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLTGLNMDRKQFVDLC 239
Query: 229 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFK 285
IL GCDY D I IG TALKLIR+HG +ET++ I +ERY IPEDWPYQ+AR LF
Sbjct: 240 ILLGCDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIPEDWPYQDARELFF 299
Query: 286 EPE 288
+P+
Sbjct: 300 KPD 302
>gi|323457006|gb|EGB12872.1| hypothetical protein AURANDRAFT_19112 [Aureococcus anophagefferens]
Length = 396
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 179/378 (47%), Positives = 248/378 (65%), Gaps = 21/378 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG-----TEMLT 55
MGIKGL ++ ++AP ++KE E Y GR +AIDASMS+YQFLI + G + +LT
Sbjct: 1 MGIKGLMGVINEHAPGAVKELVIEGYTGRVVAIDASMSLYQFLIAIRHQGEGGAPSSVLT 60
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
N GE TSH+QGMF RTIRLL+AG++P+YVFDG+PP++K ELAKR +KR +A L +A
Sbjct: 61 NAEGEQTSHIQGMFNRTIRLLQAGVRPVYVFDGKPPNMKGGELAKRTAKRQEAEAALKKA 120
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E + E I K+S KV+++ DD K+LL+LMGVPVV+AP EAEAQCA L + G+ +A
Sbjct: 121 TENDDAEGISKYSALLTKVSRKDCDDVKQLLRLMGVPVVDAPCEAEAQCAELVRGGKAHA 180
Query: 176 VASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 234
V +EDMD+LTFG+ R LR++ S+ V+E A +LE L L+ +F+D CIL GCD
Sbjct: 181 VGTEDMDALTFGSTRQLRNMTFTKKSKDDKVLEITHAAVLEGLGLSNAEFVDFCILCGCD 240
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILEN--INRERYQIPEDW----------PYQEARR 282
Y +IRG+G +TALKL+++HGSIE IL ++R +P++W Y AR
Sbjct: 241 YTSTIRGVGPKTALKLVKEHGSIEAILAKGLKAKQRGDVPDEWDDADDGPFVPAYVGARN 300
Query: 283 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 342
LF E VT +++ W PDE GL FLV GF RV A++++ +A+ + +Q R+
Sbjct: 301 LFNNHE-VTPCGDVELSWGKPDEAGLRAFLVERMGFGEQRVEGALKRLTSAQGQRTQRRM 359
Query: 343 ESFFK--PVANTSAPIKR 358
+SFFK P +AP KR
Sbjct: 360 DSFFKVLPPKPGAAPKKR 377
>gi|330914981|ref|XP_003296859.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
gi|311330789|gb|EFQ95031.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
Length = 342
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 165/310 (53%), Positives = 216/310 (69%), Gaps = 7/310 (2%)
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
+E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA
Sbjct: 2 SETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEA 61
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL + G+VYA
Sbjct: 62 KETGTAEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYA 121
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
ASEDMD+LTF P LRHL RK P++E + K+LE L + QFIDLCIL GCDY
Sbjct: 122 AASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDY 181
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VT 291
D I+GIG TALKLIR+H +E I+E+I + + IP+DWP+ +AR LF EP+V
Sbjct: 182 LDPIKGIGPSTALKLIREHNDLEGIVEHIKSQTSKKLTIPDDWPFADARLLFLEPDVRPA 241
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 351
D+ + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+
Sbjct: 242 DDPECDFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPIEK 301
Query: 352 TS---APIKR 358
T+ A +KR
Sbjct: 302 TAEQKASLKR 311
>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 236/346 (68%), Gaps = 5/346 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KLL +N K +KE+ Y ++IAIDASMS+YQFLI V G+ L NE
Sbjct: 1 MGIKQLSKLLKENCAKGIKERPLAYYSSKRIAIDASMSMYQFLIAVRSDGSS-LGNEDSP 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA E G+
Sbjct: 60 -TSHLVGFFYRTIRMVELGIIPVYVFDGVPPEVKMKELEKRSERRAAADKEYKEASEMGD 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ +E + KR KVT H ++CKRLL LMG+P APSEAEA CA LCK VY VA+ED
Sbjct: 119 KKLMEMYDKRKTKVTGMHVEECKRLLGLMGIPFETAPSEAEAYCAFLCKKKAVYGVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LR+ SRK+P++E+ + ++LE L+L ++FIDLCIL GCDYC +++
Sbjct: 179 MDALTFGSPVVLRNFSGSQSRKLPIVEYNLPELLESLSLEHEEFIDLCILLGCDYCGTLK 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + AL LI++HG IE IL++ N E +P+ W Y++A+R+F + D + I W
Sbjct: 239 GIGPKRALGLIKKHGGIEKILQSENLE---VPDGWRYRDAQRIFGSLPEIGDAREFNISW 295
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ D G+++FLV E GF+ +RV + IEK+ ++ K QGRL+ F
Sbjct: 296 GSIDRNGIVSFLVEEKGFDLERVNRGIEKLVNSRKKGVQGRLDGFI 341
>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
Length = 308
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/294 (53%), Positives = 212/294 (72%), Gaps = 4/294 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++L + AP ++KE + ++ FGRK+AIDASMSIY FLI V R+ + L NE+GE
Sbjct: 1 MGIKNLFQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAV-RSDGQQLMNESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L EA E G
Sbjct: 60 TTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKETGT 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDIEKFS+RTV+VT++HN +C++LL+LMGVP + AP+EAEAQCA L K G+VYA ASED
Sbjct: 120 AEDIEKFSRRTVRVTREHNAECQKLLRLMGVPFIIAPTEAEAQCAVLAKGGKVYAAASED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL RK P+ E + K++E L + +QF+DLCIL GCDY D +
Sbjct: 180 MDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGCDYLDPVP 239
Query: 241 GIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVVT 291
+G TALKLIR+H ++E +++ I + +Y +PEDWP++ R +P T
Sbjct: 240 KVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLPEDWPFRRRARTVSQPRRAT 293
>gi|448098848|ref|XP_004199006.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359380428|emb|CCE82669.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/320 (47%), Positives = 220/320 (68%), Gaps = 5/320 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M +YQ+LI V + + LTNE GE TSHL GMF RTIR+++ +KP+YVFDG+PP LK
Sbjct: 1 MCLYQYLIAVRQAEGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
EL KR ++ DA + + ED+ ++ KRTV+VT++ N + K+LL+LMG+P V+A
Sbjct: 61 ELEKRLLRKEDAIKQMENIKDEATVEDMVRYEKRTVRVTREQNQEAKKLLELMGIPYVDA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P EAEAQCAAL + G+V+A ASEDMD++ + P LRHL +RK+P+ + E +K+LE
Sbjct: 121 PCEAEAQCAALARKGKVFAAASEDMDTICYEPPFLLRHLTVAEARKLPIDQIEYSKVLES 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIP 272
L + D FIDLCIL GCDYC++I+G+G TA KLI++HGS++ I+E N ++ +Y++P
Sbjct: 181 LEMDKDTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEYLSANPDKTKYKVP 240
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
E+WPY EAR LF PE V + + + +KW PD EGLI ++V + GF+ +R+ EK+K
Sbjct: 241 ENWPYNEARELFLHPE-VQNADDINLKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKK 299
Query: 333 AKNKSSQGRLESFFKPVANT 352
QGRL+ FF+ + +
Sbjct: 300 GLKGGVQGRLDGFFQVIPKS 319
>gi|389740276|gb|EIM81467.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 528
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 159/270 (58%), Positives = 207/270 (76%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL +NAP S+KE ++ FGRK+AIDASMSIYQFLI V + EMLTN+AGE
Sbjct: 1 MGIKGLTALLLENAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PPDLK LAKR+ KR +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKAGVLAKRFEKREEAKEEGEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTV+VT++HN +C+RLL+LMG+PVV APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDVDRFSRRTVRVTREHNAECQRLLRLMGIPVVVAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E ++K LE L + M QFIDLCIL GCDY + I+
Sbjct: 181 MDTLTFSAPTLFRHLTFSEAKKAPITEVTLSKALEGLGMKMPQFIDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQ 270
G+G +TALKLIR+HG ++ +LE++ ++ +
Sbjct: 241 GVGPKTALKLIREHGGLKEVLEHLKEKQAE 270
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 8/113 (7%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA+++F++P+V+ +E +++ W APD +GL+ FLV E GFN DRV K EK
Sbjct: 408 QIPEFWPWEEAKKVFQKPDVIPADE-VELDWKAPDVDGLVQFLVVEKGFNEDRVRKGAEK 466
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRK 382
+ N QGRL+ FF T P ++ P PK K K GG RK
Sbjct: 467 LSKFLNAKQQGRLDGFF-----TVQPKAKESP--APKGKGAAKGKDAKGGKRK 512
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 155/327 (47%), Positives = 228/327 (69%), Gaps = 7/327 (2%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M +YQ+LI V + + LT+E GE TSHL GMF RTIRL+E+G+KP+YVFDG+PP LK
Sbjct: 1 MCLYQYLIAVRQQDGQQLTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
EL KR KR DA + + E G E++ K+ KRTV+ +++ ND+ K+LL+LMG+P + A
Sbjct: 61 ELEKRLLKRQDALKQIEDLKETGTVEELMKYEKRTVRASREQNDEAKKLLELMGIPYIVA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
PSEAEAQCA L ++G+V+A ASEDMD+L + LRHL +RK+P+ + + +L+
Sbjct: 121 PSEAEAQCAELARAGKVFAAASEDMDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLKG 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIP 272
L++ F+DLCIL GCDYC++I+G+G TA KLI++HGS++ I+ EN + +Y++P
Sbjct: 181 LDMDRSTFVDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKVP 240
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
E+WPY EA++LF PE +T +++ +KW+ P+ +GL+ F+V + GF+ +R+ EK+K
Sbjct: 241 ENWPYDEAKQLFMNPE-ITKGDEVDVKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKK 299
Query: 333 AKNKSSQGRLESFFKPVANTSAPIKRK 359
A QGRL+ FF V S+P KRK
Sbjct: 300 ALKGGVQGRLDGFFTVV--KSSPAKRK 324
>gi|119192254|ref|XP_001246733.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 368
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 165/331 (49%), Positives = 218/331 (65%), Gaps = 21/331 (6%)
Query: 36 SMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 95
SMSIY FLI V R+ + L NE+GE TSHL G F RT+R+++ G+KP+YVFDG PP LK
Sbjct: 22 SMSIYSFLIAV-RSDGQQLMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKS 80
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
ELAKR +++ +A + EA E G ED+EKFS+RTV+VT++HN++
Sbjct: 81 GELAKRMARKQEAAEQHEEAKETGTAEDVEKFSRRTVRVTREHNEEY------------- 127
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP+EAEAQCA L ++G+VYA ASEDMD+L F +P LRHL RK P+ E + ++LE
Sbjct: 128 APTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLE 187
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIP 272
L + QF+DLCIL GCDY D I +G TALK+IR HGS+E + +EN +++Y IP
Sbjct: 188 GLGMDRKQFVDLCILLGCDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIP 247
Query: 273 EDWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
EDWPY++AR LF EP+V D + KW +PD EGL+ FLV GF+ DRV +++
Sbjct: 248 EDWPYEQARDLFFEPDVRPADHPECDFKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQ 307
Query: 332 AAKNKSSQGRLESFFKPVANTS---APIKRK 359
+ Q RLE FFKPVA T A +KRK
Sbjct: 308 KNLKTAQQSRLEGFFKPVAKTEEEKASLKRK 338
>gi|302688649|ref|XP_003034004.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
gi|300107699|gb|EFI99101.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
Length = 452
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 153/264 (57%), Positives = 206/264 (78%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL+++APKSMKE + ++ FGRK+AIDASMSIYQFLI V + EMLTN+AGE
Sbjct: 1 MGIKGLTGLLSEHAPKSMKEHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTIR++E G+KP YVFDG+PPDLKK L+KR+ KR +A + EA E G
Sbjct: 61 ITSHLMGLFYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKRFEKRDEAKEGEEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+++KFS+R VKVT++HN++C+RLLKLMG+P VEAPSEAEAQCA L + G+VYA SED
Sbjct: 121 AAEVDKFSRRQVKVTREHNEECRRLLKLMGIPYVEAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P++E + LE L++ + F+DLCIL GCDY + I+
Sbjct: 181 MDTLTFNAPILFRHLTVSEAKKQPILEINLKAALEGLDMDLSMFVDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
G+G ++ALKL+R+HG + ++E++
Sbjct: 241 GVGPKSALKLVREHGGLAGVVEHL 264
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 6/96 (6%)
Query: 266 RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 325
R QIPE+WP++EA++LF P+V+ +E ++++W +PD +GL+ FLV+E GFN +RV K
Sbjct: 327 RGGVQIPEEWPWEEAKKLFLTPDVIPADE-VELEWKSPDVDGLVQFLVNEKGFNEERVRK 385
Query: 326 AIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
EK+ N QGRL+ FF T P + EP
Sbjct: 386 GAEKLAKFLNAKQQGRLDGFF-----TVKPKDKPEP 416
>gi|448102657|ref|XP_004199858.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359381280|emb|CCE81739.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 150/320 (46%), Positives = 219/320 (68%), Gaps = 5/320 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M +YQ+LI V + + LTNE GE TSHL GMF RTIR+++ +KP+YVFDG+PP LK
Sbjct: 1 MCLYQYLIAVRQAEGQQLTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
EL KR ++ +A + + ED+ ++ KRTV+VT++ N + K+LL+LMG+P V+A
Sbjct: 61 ELEKRLLRKEEAIKQMENIKDEATVEDMVRYEKRTVRVTREQNQEAKKLLELMGIPYVDA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P EAEAQCA L + G+V+A ASEDMD++ + P LRHL +RK+P+ + E +K+LE
Sbjct: 121 PCEAEAQCAELARKGKVFAAASEDMDTICYEPPFLLRHLTVAEARKLPIDQIEYSKVLES 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIP 272
L + D FIDLCIL GCDYC++I+G+G TA KLI++HGS++ I+E N ++ +Y++P
Sbjct: 181 LEMDKDTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDKIVEFLRANPDKTKYKVP 240
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
E+WPY EAR LF PE V + + + +KW PD EGLI ++V + GF+ +R+ EK+K
Sbjct: 241 ENWPYTEARELFLHPE-VQNADDINLKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKK 299
Query: 333 AKNKSSQGRLESFFKPVANT 352
QGRL+ FF+ + +
Sbjct: 300 GLKGGVQGRLDGFFQVIPKS 319
>gi|402468038|gb|EJW03248.1| hypothetical protein EDEG_00228 [Edhazardia aedis USNM 41457]
Length = 362
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 175/362 (48%), Positives = 241/362 (66%), Gaps = 14/362 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L+KLL +A ++K + + G++IAIDAS+S+YQFLI V R+ LT ++G+
Sbjct: 1 MGIHQLSKLLQHSAKPAIKNRDISYFTGQRIAIDASLSLYQFLIAV-RSDGAGLTTDSGD 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK-KQELAKRYSKRADATDDLAEAVEAG 119
TSHL G F RTIR++ +G+KP++VFDG PP+LK EL KR KR A + A+E G
Sbjct: 60 TTSHLIGTFYRTIRIVTSGIKPLFVFDGLPPELKLSHELEKRKEKRDAAAKEYEMALETG 119
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+KE IEKF KR VKVTK+H DDCK+LL LM VP V APSEAEA A LC G V AVA+E
Sbjct: 120 DKEQIEKFDKRKVKVTKKHVDDCKKLLDLMKVPYVVAPSEAEAYAAYLCIKGVVDAVATE 179
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
DMD+LTFGAP LR+L ++K+P++E+ + +IL+EL + +QFID+CI+ GCDY +
Sbjct: 180 DMDALTFGAPILLRNLNAAENKKLPIVEYNLKEILKELKINHNQFIDVCIMLGCDYVKPL 239
Query: 240 RGIGGQTALKLIRQHGSIETILE---------NINRERYQIPEDWPYQEARRLFKEPEVV 290
RG G + A ++I +H IETILE N + + W ++EAR +F E V
Sbjct: 240 RGFGPKRAYEMILKHKDIETILEKEKIKSLESTKNENSSEADDIWNFEEARIIFNELPHV 299
Query: 291 TDE--EQL-QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+DE E++ +I + + ++ FLV ENGF+ +RV K +E+ K+AK K Q R+ESFFK
Sbjct: 300 SDEIIEKMPEIDFDKIVVDDVVKFLVHENGFSEERVLKGLERFKSAKEKKKQVRIESFFK 359
Query: 348 PV 349
V
Sbjct: 360 KV 361
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 234/353 (66%), Gaps = 12/353 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL++L+++ + + + G+ I IDASM IYQ LI + + + L GE
Sbjct: 1 MGIQGLSRLISNKSHTGTSNKDLDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAAPEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTIRL+EAG+KP+YVFDG+PP LK++EL KR ++A A L+E +
Sbjct: 61 VTSHLTGLFYRTIRLIEAGIKPVYVFDGKPPQLKQKELDKRNERQAQA---LSELKVTDD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+IEK KR+V+ T++ +++ K+LL MG+PVV+AP EAEA CAA K+G+ YA A+ED
Sbjct: 118 SYEIEKQEKRSVRATREQSEEVKKLLTFMGIPVVQAPCEAEATCAAYVKAGKAYATATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +I+
Sbjct: 178 MDSLTFGSTHVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTDEE 294
GIG A +LI++H +IE +L+ + ++ + +PE +P + R LF P+V +E
Sbjct: 238 GIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFVTMVPEYYPIEAVRELFNNPDVDITQE 297
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ W PD E LI+FLV E F+SDRV K E+I +AK K +Q R+ FFK
Sbjct: 298 ---LTWKPPDREALISFLVDEKKFSSDRVNKGCERILSAKAKGTQHRISQFFK 347
>gi|347601761|gb|AEP16246.1| flap endonuclease 1 [Emiliania huxleyi virus 208]
Length = 358
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 239/365 (65%), Gaps = 13/365 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL++L+ + A + + G+ I IDASM IYQ LI + + + L GE
Sbjct: 1 MGINGLSRLINNKAHNGTSNKDLDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+E +
Sbjct: 61 VTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAQA---LSELKLTDD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++EK KR+V+ T++H+++ K++L LMG+PVV++P EAEA CAA K+G+ YA A+ED
Sbjct: 118 ATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVVQSPCEAEATCAAYVKTGKAYATATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +I+
Sbjct: 178 MDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTDEE 294
GIG A +LI++H +IE +L+ + ++ + +P+D+P + R LF PEV +E
Sbjct: 238 GIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFSTMVPDDYPIEAVRDLFNNPEVDITQE 297
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ W+ + + LI FLV E F++DRV K ++I AAK K +Q R+ FFK V T
Sbjct: 298 ---LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFK-VKQTPV 353
Query: 355 PIKRK 359
KRK
Sbjct: 354 GQKRK 358
>gi|347482295|gb|AEO98236.1| flap endonuclease-1 [Emiliania huxleyi virus 203]
gi|347601360|gb|AEP15846.1| flap structure-specific endonuclease 1 [Emiliania huxleyi virus
207]
gi|357972633|gb|AET97906.1| flap endonuclease-1 [Emiliania huxleyi virus 201]
Length = 358
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 238/365 (65%), Gaps = 13/365 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL++L+ + A + + G+ I IDASM IYQ LI + + + L GE
Sbjct: 1 MGINGLSRLINNKAHNGTSNKDLDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+E +
Sbjct: 61 VTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAQA---LSELKLTDD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++EK KR+V+ T++H+++ K++L LMG+PV++AP EAEA CAA K+G+ YA A+ED
Sbjct: 118 ATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVIQAPCEAEATCAAYVKTGKAYATATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +I+
Sbjct: 178 MDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTDEE 294
GIG A +LI++H +IE +L + ++ + +P+D+P + R LF PEV +E
Sbjct: 238 GIGPTRAYQLIQEHSTIENVLGVLKKKHGEEQFSTMVPDDYPIEAVRDLFNNPEVDITQE 297
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ W+ + + LI FLV E F++DRV K ++I AAK K +Q R+ FFK V T
Sbjct: 298 ---LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFK-VKQTPV 353
Query: 355 PIKRK 359
KRK
Sbjct: 354 GQKRK 358
>gi|429962587|gb|ELA42131.1| hypothetical protein VICG_00772 [Vittaforma corneae ATCC 50505]
Length = 344
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 164/347 (47%), Positives = 231/347 (66%), Gaps = 5/347 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KL+ + K++ +K Y KIAIDAS+ +YQFLI V G + +A
Sbjct: 1 MGIKQLSKLIKEKCKKAIVSRKMGYYSSTKIAIDASLCLYQFLIAVRTDGANLGYEDA-- 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E+G+ P+YVFDG+ P +K EL KR +R A L +A +
Sbjct: 59 TTSHLVGMFYRTIRIIESGIIPVYVFDGKAPPIKAIELQKRNERRLKAEKMLEQAKLEED 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K++++K KR VKV + H DDCKRL +LMGVP V A SE+EA C+ LCK G V AVA+ED
Sbjct: 119 KKEMDKHEKRKVKVEESHVDDCKRLFRLMGVPFVTAESESEAYCSLLCKRGVVKAVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FGAP LR++ S+ + + E+ + IL+EL LTM FIDLCIL GCDYCD+I+
Sbjct: 179 MDALCFGAPILLRNMNASQSKNLDIDEYNLGTILKELELTMGSFIDLCILMGCDYCDTIK 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + A LI+++G IE+I+E+ E ++P+++ Y+ AR +F E V + E +I +
Sbjct: 239 GVGHKRAYDLIKKYGCIESIIES---ETPEVPDNFDYKAARLIFNELSSVGEAENFEIMY 295
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
D+EGL+ FLV E GF+ RVT IEKI + + +Q +L++FFK
Sbjct: 296 DQLDKEGLVQFLVKEKGFDEVRVTNGIEKIIKSSKRGNQTKLDAFFK 342
>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|347481843|gb|AEO97829.1| flap endonuclease-1 [Emiliania huxleyi virus 84]
gi|347600467|gb|AEP14954.1| endonuclease [Emiliania huxleyi virus 88]
Length = 358
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 239/365 (65%), Gaps = 13/365 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL++L+ + A + + G+ I IDASM IYQ LI + + + L GE
Sbjct: 1 MGINGLSRLINNKAHNGTSNKDLDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAACEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+E +
Sbjct: 61 VTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAQA---LSELKLTDD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++EK KR+V+ T++H+++ K++L LMG+PVV+AP EAEA CAA K+G+ YA A+ED
Sbjct: 118 ATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVVQAPCEAEATCAAYVKTGKAYATATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +I+
Sbjct: 178 MDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTDEE 294
GIG A +LI++H +IE +L+ + ++ + +P+D+P + R LF P+V +E
Sbjct: 238 GIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFSTMVPDDYPIEAVRDLFNNPDVDITQE 297
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ W+ + + LI FLV E F++DRV K ++I AAK K +Q R+ FFK V T
Sbjct: 298 ---LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFK-VKQTPV 353
Query: 355 PIKRK 359
KRK
Sbjct: 354 GQKRK 358
>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
Length = 358
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 162/365 (44%), Positives = 239/365 (65%), Gaps = 13/365 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL++L+ + A + + G+ I IDASM IYQ LI + + + L GE
Sbjct: 1 MGINGLSRLINNKAHNGTSNKDLDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+E +
Sbjct: 61 VTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAHA---LSELKLTDD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++EK KR+V+ T++H+++ K++L LMG+PVV+AP EAEA CAA K+G+ YA A+ED
Sbjct: 118 ATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVVQAPCEAEATCAAYVKTGKAYATATED 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +I+
Sbjct: 178 MDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIK 237
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTDEE 294
GIG A +LI++H +IE +L+ + ++ + +P+D+P + R LF P+V +E
Sbjct: 238 GIGPTRAYQLIQEHSTIEIVLDVLKKKHGEAQFSTMVPDDYPIEAVRDLFNNPDVDITQE 297
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ W+ + + LI FLV + F++DRV K ++I AAK K +Q R+ FFK V T
Sbjct: 298 ---LTWNTINRDALIAFLVEDKKFSADRVNKGCDRILAAKAKGTQHRINHFFK-VKQTPV 353
Query: 355 PIKRK 359
KRK
Sbjct: 354 GQKRK 358
>gi|392575628|gb|EIW68761.1| hypothetical protein TREMEDRAFT_69192 [Tremella mesenterica DSM
1558]
Length = 437
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 148/264 (56%), Positives = 205/264 (77%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L+++NAP++MK+ + ++ FGRK+AIDASMSIYQFLI V + +ML NE+G+
Sbjct: 1 MGIKGLTALISENAPRAMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A + EA E G
Sbjct: 61 VTSHLMGFFYRTIRMVDQGIKPCYIFDGKPPELKGGVLAKRFARREEAKEGEEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
EDI+K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+VYA SED
Sbjct: 121 VEDIDKLARRQVRVTREHNEECKKLLALMGIPVVTAPGEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF P LRHL ++K+P+ E + +LEEL +TMDQFI+LCIL GCDY + +
Sbjct: 181 MDTLTFSTPILLRHLTFSEAKKMPISEIHLNIVLEELGMTMDQFIELCILLGCDYLEPCK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
GIG +TALKL+R+HGS+ ++ +
Sbjct: 241 GIGPKTALKLLREHGSLAAVVSFV 264
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA+RLF++P+VV +E L++ W APD EGL+ FL + GFN DRV K
Sbjct: 330 QIPEYWPWEEAKRLFQQPDVVKGDE-LELDWKAPDVEGLVQFLCRDKGFNEDRVRAGAAK 388
Query: 330 IKAAKNKSSQGRLESFF 346
+ QGRL+ FF
Sbjct: 389 LAKMLAAKQQGRLDGFF 405
>gi|58266500|ref|XP_570406.1| flap endonuclease [Cryptococcus neoformans var. neoformans JEC21]
gi|134111280|ref|XP_775782.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818103|sp|P0CS61.1|FEN1_CRYNB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|338818104|sp|P0CS60.1|FEN1_CRYNJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|50258446|gb|EAL21135.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226639|gb|AAW43099.1| flap endonuclease, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 453
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 147/264 (55%), Positives = 205/264 (77%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL++NAPK MK+ + ++ FGRK+AIDASMSIYQFLI V + +ML NE+G+
Sbjct: 1 MGIKGLTGLLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A + EA E G
Sbjct: 61 VTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARREEAKEGEEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+VYA SED
Sbjct: 121 AEDVDKLARRQVRVTREHNEECKKLLSLMGIPVVTAPGEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL ++K+P+ E + L +L ++MDQFI+LCIL GCDY + +
Sbjct: 181 MDTLTFNSPILLRHLTFSEAKKMPISEIHLDVALRDLEMSMDQFIELCILLGCDYLEPCK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
GIG +TALKL+R+HG++ ++E+I
Sbjct: 241 GIGPKTALKLMREHGTLGKVVEHI 264
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA++LF +P+VV ++ L ++W PD EGL+ FL + GFN DRV K
Sbjct: 339 QIPEFWPWEEAKQLFMKPDVVNGDD-LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAK 397
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
+ QGRL+ FF +K KEP
Sbjct: 398 LSKMLAAKQQGRLDGFFT--------VKPKEP 421
>gi|321257144|ref|XP_003193485.1| flap endonuclease [Cryptococcus gattii WM276]
gi|317459955|gb|ADV21698.1| flap endonuclease, putative [Cryptococcus gattii WM276]
Length = 453
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/264 (55%), Positives = 205/264 (77%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL++NAPK MK+ + ++ FGRK+AIDASMSIYQFLI V + +ML NE+G+
Sbjct: 1 MGIKGLTGLLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A + EA E G
Sbjct: 61 VTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARREEAKEGEEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+VYA SED
Sbjct: 121 AEDVDKLARRQVRVTREHNEECKKLLSLMGIPVVTAPGEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL ++K+P+ E + L +L ++MDQFI+LCIL GCDY + +
Sbjct: 181 MDTLTFHSPILLRHLTFSEAKKMPISEIHLDVALRDLEMSMDQFIELCILLGCDYLEPCK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
GIG +TALKL+R+HG++ ++E+I
Sbjct: 241 GIGPKTALKLMREHGTLGKVVEHI 264
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA++LF +P+VV ++ L ++W PD EGL+ FL + GFN DRV K
Sbjct: 339 QIPEFWPWEEAKQLFLKPDVVNGDD-LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAK 397
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
+ QGRL+ FF +K KEP
Sbjct: 398 LSKMLAAKQQGRLDGFFT--------VKPKEP 421
>gi|405120385|gb|AFR95156.1| flap endonuclease [Cryptococcus neoformans var. grubii H99]
Length = 453
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 146/264 (55%), Positives = 205/264 (77%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL++NAPK MK+ + ++ FGRK+AIDASMSIYQFLI V + +ML NE+G+
Sbjct: 1 MGIKGLTGLLSENAPKCMKDHEMKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLMNESGD 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A + EA E G
Sbjct: 61 VTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARREEAKEGEEEAKETGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED++K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+VYA SED
Sbjct: 121 AEDVDKLARRQVRVTREHNEECKKLLSLMGIPVVTAPGEAEAQCAELARAGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF +P LRHL ++++P+ E + L +L ++MDQFI+LCIL GCDY + +
Sbjct: 181 MDTLTFNSPILLRHLTFSEAKRMPISEIHLDVALRDLEMSMDQFIELCILLGCDYLEPCK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
GIG +TALKL+R+HG++ ++E+I
Sbjct: 241 GIGPKTALKLMREHGTLGKVVEHI 264
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA++LF +P+VV ++ L ++W PD EGL+ FL + GFN DRV K
Sbjct: 339 QIPEFWPWEEAKQLFMKPDVVNGDD-LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAK 397
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEP 361
+ QGRL+ FF +K KEP
Sbjct: 398 LSKMLAAKQQGRLDGFFT--------VKPKEP 421
>gi|317374947|sp|A8NQC2.3|FEN1_COPC7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 458
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/264 (57%), Positives = 203/264 (76%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL ++AP S+KE ++ FGRK+AIDASMSIYQFLI V + EMLTN+AGE
Sbjct: 1 MGIKGLTGLLNEHAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ KR +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFEKREEAKEEGEEAKEIGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTVKVTKQHN++C++LL+LMGVP V APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDVDRFSRRTVKVTKQHNEECQKLLRLMGVPCVIAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E + L+ L++ M QF+DLCIL GCDY + I+
Sbjct: 181 MDTLTFNAPILFRHLTFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
G+G ++ALKLIR+ G ++ ++E++
Sbjct: 241 GVGPKSALKLIREFGGLKEVVEHL 264
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIP++WP++EA+++F +P+V+ +Q++++W PD EGL+ FLV+E GF+ +RV K EK
Sbjct: 343 QIPDEWPWEEAKQIFLKPDVIP-ADQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEK 401
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
+ N QGRL+ FF + P K K T K G G+K K
Sbjct: 402 LTKFLNAKQQGRLDGFFTVKPKQAPPPAAKGKGAASKGTKRKGEDKAEGSGKKAK 456
>gi|67610024|ref|XP_667077.1| flap endonuclease 1 [Cryptosporidium hominis TU502]
gi|54658174|gb|EAL36849.1| flap endonuclease 1 [Cryptosporidium hominis]
Length = 454
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/344 (47%), Positives = 228/344 (66%), Gaps = 22/344 (6%)
Query: 37 MSIYQFLIVVGRTGTEM--LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK 94
M IYQFL + R G++ LTN +GE TSH+ GM +RT RLLEAG+KP++VFDG PP++K
Sbjct: 1 MWIYQFLAAI-REGSQWGNLTNSSGESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMK 59
Query: 95 KQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV 154
K EL KR +R A +L +A E G++E I+K S RT+ VTK+ +D K+LL +G+P +
Sbjct: 60 KDELTKRDERREKALAELEKAQEVGDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMPCI 119
Query: 155 EAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL-----------MDPSSRKI 203
+APSEAEAQCA LCK G VY V +ED DSLTFG P ++ L PS +K
Sbjct: 120 DAPSEAEAQCAELCKDGLVYGVVTEDADSLTFGTPIQIKQLNFSESSNKISDKSPSKQKN 179
Query: 204 PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN 263
+ +++ IL EL++ MDQFIDLCILSGCDYC +IRGIG TA KL++++ +IE+IL+N
Sbjct: 180 GMQIIKLSLILSELDINMDQFIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKN 239
Query: 264 INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSD 321
I++ + +P ++ + + R LFK P +V+ Q++ IKWS P E L+ +L+ E FN
Sbjct: 240 IDQTKNPVPGNFDFSKVRELFKNP-LVSKNNQIKDLIKWSNPKYEELMEWLIKEQNFNEA 298
Query: 322 RVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTP 365
RV E+IK +KNK+SQ L+ FFK +N +RK TP
Sbjct: 299 RVISYCERIKKSKNKTSQTCLDGFFKSASN-----ERKNTHKTP 337
>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 335
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 151/317 (47%), Positives = 227/317 (71%), Gaps = 6/317 (1%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
AIDAS+SIYQFL+ V TG +++ +E G TSHLQG+ +RT+RL+E+G+KP+YVFDG+PP
Sbjct: 1 AIDASLSIYQFLVSVRHTGQQLVDSE-GNTTSHLQGVLSRTVRLIESGVKPVYVFDGKPP 59
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
++K ELAKR +R +A +L +A+E+G++E I+KFS+RTV + K ++CK+LL+ +GV
Sbjct: 60 EMKGAELAKRLERREEAQKELEKAIESGDQEAIDKFSRRTVHLDKTQVEECKQLLECLGV 119
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 211
P V+AP EAEA+CAAL K+G V A+A+EDMDSL F P+ +RHL ++ +++ +
Sbjct: 120 PYVDAPCEAEAECAALNKAGLVDAMATEDMDSLAFATPQLIRHL-SYGAKGDDLLQIDYK 178
Query: 212 KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQI 271
++E+ LT ++F+D CIL GCDYCD+I+GIG + A +LI+++ +IETI++N+++ +Y++
Sbjct: 179 IMMEKSGLTREEFVDFCILMGCDYCDTIKGIGKKHAYELIKKYHNIETIIKNLDK-KYEL 237
Query: 272 PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
PED+ Y AR LF EV TD + + W PD E + FL F RV A KI
Sbjct: 238 PEDFDYVRARELFFNHEVTTD---VNLTWKKPDVEKVKEFLCGSRMFAESRVEAACAKIV 294
Query: 332 AAKNKSSQGRLESFFKP 348
A+ K +Q R+++FFKP
Sbjct: 295 KARGKGTQMRMDNFFKP 311
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 216/308 (70%), Gaps = 6/308 (1%)
Query: 67 GMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 126
GMF RT+R++ G+KP+YVFDG+PP++K +EL KR +R +A LAEA E G+ +EK
Sbjct: 2 GMFYRTVRMITNGIKPVYVFDGKPPEMKCEELEKRTERRVEAEKQLAEAKEKGDAMAVEK 61
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
F +R VKVTK N++ K+LL+LMGVPV +AP EAEAQCA L ++G+V+A A+EDMD+L F
Sbjct: 62 FERRLVKVTKDQNEEAKKLLRLMGVPVFDAPCEAEAQCAELVRAGKVFAAATEDMDALAF 121
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
G+ R LR L ++K+PV E + ++L++ + M QF+DLCIL GCDY +IRGIG +
Sbjct: 122 GSKRLLRQLTASEAKKLPVKEINLEQVLKDFEMDMPQFVDLCILLGCDYTKTIRGIGPKK 181
Query: 247 ALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 306
A +LI++H +IE +LENI+ E+Y +PE+W ++EARRLF +PE +T+ E + ++W PD E
Sbjct: 182 AFELIQKHKTIENVLENIDTEKYPVPENWQFREARRLFMKPE-ITNCEDINLQWGKPDTE 240
Query: 307 GLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPK 366
++ +L E FN +RV ++ +++ + + QGR++SFF S+ IK EP T +
Sbjct: 241 EIVRYLCGEKNFNEERVRSSLVRMEKGRQSAQQGRIDSFF----TVSSSIK-SEPTATKR 295
Query: 367 ATTNKKSK 374
++K K
Sbjct: 296 KAVDEKCK 303
>gi|74612809|sp|Q76F73.1|FEN1_COPCI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46092541|dbj|BAD14303.1| flap endonuclease-1 [Coprinopsis cinerea]
Length = 458
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 202/264 (76%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL ++AP S+KE ++ FGRK+AIDASMSIYQFLI V + EMLTN+AGE
Sbjct: 1 MGIKGLTGLLNEHAPNSIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ KR +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFEKREEAKEEGEEAKEIGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+++FS+RTVKVTKQHN++C++LL+LM VP V APSEAEAQCA L + G+VYA SED
Sbjct: 121 AEDVDRFSRRTVKVTKQHNEECQKLLRLMSVPCVIAPSEAEAQCAELARGGKVYAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTF AP RHL ++K P+ E + L+ L++ M QF+DLCIL GCDY + I+
Sbjct: 181 MDTLTFNAPILFRHLTFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLGCDYLEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENI 264
G+G ++ALKLIR+ G ++ ++E++
Sbjct: 241 GVGPKSALKLIREFGGLKEVVEHL 264
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIP++WP++EA+++F +P+V+ +Q++++W PD EGL+ FLV+E GF+ +RV K EK
Sbjct: 343 QIPDEWPWEEAKQIFLKPDVIP-ADQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEK 401
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
+ N QGRL+ FF + P K K T K G G+K K
Sbjct: 402 LTKFLNAKQQGRLDGFFTVKPKQAPPPAAKGKGAASKGTKRKGEDKAEGSGKKAK 456
>gi|403358237|gb|EJY78757.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 967
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/397 (42%), Positives = 240/397 (60%), Gaps = 33/397 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM----LTN 56
MGI L L+ + APK++K + E G+ IA DASM+IYQFLI M L +
Sbjct: 1 MGIHKLMTLIQEKAPKAVKTIQLEYLTGKVIACDASMAIYQFLIATQTMKQGMGIGELRD 60
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
G +T HL GMF RTI+ LE+G+KPI+VFDG+PPDLK + L +R + A ++ +
Sbjct: 61 SNGNLTGHLVGMFHRTIQFLESGIKPIWVFDGKPPDLKNRVLDQRKETKEKAVEEKKNRI 120
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E G+ E ++ + R+VKVT D K+LL+LMG PV++AP EAEAQCA L K G +A
Sbjct: 121 EEGDMEGAKRMAGRSVKVTWDMMRDAKKLLRLMGCPVIDAPGEAEAQCAHLVKLGLAFAT 180
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ASEDMDSLTFG LR +S+K P+++ ++ ++LE + DQFIDLCIL GCDY
Sbjct: 181 ASEDMDSLTFGTKVLLRGF---NSKKEPIIQIDLEEVLEGFMMNHDQFIDLCILCGCDYT 237
Query: 237 DSIRGIGGQTALKLIRQHGS-IETILENINRE--------RYQIPEDWPYQEARRLFKEP 287
SI GIG A + + +HG IE +++ + E +Y IPE++ ++EAR LFK P
Sbjct: 238 TSITGIGPIKAYQYLSEHGGIIENVIKKVEYENQKPWKKKKYHIPENFLFKEARELFKNP 297
Query: 288 EVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ D+ +L+ IKW+ PDEEGL FL+++ GF+ +V ++K+K + K++QGRL+ F
Sbjct: 298 RIEKDQSKLEYKIKWTKPDEEGLKEFLITQKGFSDVKVDSGLKKLKGCQGKTNQGRLDCF 357
Query: 346 FKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRK 382
F NT K T+N + G G K
Sbjct: 358 FG---------------NTFKKTSNNQVIEKGKGKSK 379
>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/317 (46%), Positives = 214/317 (67%), Gaps = 5/317 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M +YQ+LI V ++ + LT+E GE TSHL GMF RTIRL+E G+KP+YVFDG+PP LK
Sbjct: 1 MCLYQYLIAVRQSDGQQLTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
EL KR ++ +A + + E++ ++ KR+V+VTK+ N++ K+LL+LMG+P V+A
Sbjct: 61 ELEKRMIRKKEALKQQEDIKDTATVEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P EAEAQCA L +G+V+A ASEDMD+L + P LRHL +RK+P+ + + K +E
Sbjct: 121 PCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAMEG 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIP 272
L + FIDLCIL GCDYC++I+G+G TA KLI++HGS++ I+ EN + ++++P
Sbjct: 181 LEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKVP 240
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
E+WPY EAR LF P+V +E + +KW P + L+ F+V + GF+ DRV EK+K
Sbjct: 241 ENWPYAEARELFLNPDVSPGKE-INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKK 299
Query: 333 AKNKSSQGRLESFFKPV 349
QGRL+ FF V
Sbjct: 300 GLKGGVQGRLDGFFSVV 316
>gi|146171182|ref|XP_001470841.1| flap endonuclease-1 [Tetrahymena thermophila]
gi|317376196|sp|A4VDN2.1|FEN1_TETTS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146145019|gb|EDK31639.1| flap endonuclease-1 [Tetrahymena thermophila SB210]
Length = 384
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 239/396 (60%), Gaps = 26/396 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG---TEMLTNE 57
MGI L LL + AP +K + Y GR IA DASM++YQFL + LT++
Sbjct: 1 MGIHKLMDLLKEKAPGCIKTSDLKFYAGRMIACDASMAMYQFLATTSSASDFQIQNLTDK 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G T HL G+ RT+ L+E G+KP++VFDG+PP K ELA+R + +A + A+E
Sbjct: 61 DGNKTGHLVGLLNRTVMLIENGLKPVWVFDGKPPQFKSGELARRQKAKDEAAEKQKTAIE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ ++ K +R + +TK+ D +LL+L+GVPV+ AP EAEAQCAAL K+ +V+A
Sbjct: 121 TGDMQEALKQEQRNLHITKEMKADAIKLLQLVGVPVILAPCEAEAQCAALAKAKKVFATV 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTF P LR+L +S+K P+ E K+L+EL L+ ++F+DLCIL GCDY
Sbjct: 181 TEDMDALTFATPFLLRNL---NSKKEPITEINYEKMLQELKLSHNEFVDLCILCGCDYLG 237
Query: 238 SIRGIGGQTALKLIRQHGSIETILENI--------NRERYQIPEDWPYQEARRLFKEPEV 289
I G+G A KLI +H S+E +LE++ +++Y +P + Y AR LF PE
Sbjct: 238 RIEGVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKKQKYTVPSSYDYVSARDLFINPE- 296
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK-NKSSQGRLESFFK- 347
VTD E +Q++W PD E L FLV E GF+ RVT +EK+ AK +K SQ RL FFK
Sbjct: 297 VTDPETIQLEWKKPDVEELKKFLVEEKGFSEQRVTSQMEKVLNAKEHKGSQTRLNDFFKV 356
Query: 348 -PVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRK 382
P +S K+P NT A NKK GG+K
Sbjct: 357 QPKDTSSTSKASKKPTNTKSA--NKK------GGKK 384
>gi|357621466|gb|EHJ73288.1| flap endonuclease-1 [Danaus plexippus]
Length = 322
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 172/379 (45%), Positives = 236/379 (62%), Gaps = 61/379 (16%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KL+AD AP ++KE + ++YFGRK+AIDASMS+YQFLI V G + LT+ GE
Sbjct: 1 MGILGLSKLIADIAPMAVKETEIKNYFGRKVAIDASMSLYQFLIAVRSQGAQ-LTSVDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIRL+E G+KP+YVFDG+PPD+K +L KR +R +A +L +A EAG+
Sbjct: 60 TTSHLMGTFYRTIRLIEDGIKPVYVFDGKPPDMKSHQLNKRAERREEAEKELQKATEAGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
I+KF++R VKVT+QH + ++LLKLMG+PVVE A C A + ++
Sbjct: 120 TASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVE------APCEAEAQCAEL------- 166
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
FIDLCIL GCDYC SI+
Sbjct: 167 -------------------------------------------FIDLCILLGCDYCGSIK 183
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + A++LI+QH SIE +L NI+ ++Y PE+W Y+ ARRLF++PE VT+ + +++KW
Sbjct: 184 GIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPE-VTEAKDVELKW 242
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
S PDEEGL+ FL + FN +RV +K+ A+ ++QGRL+ FFK ++ T P KRK
Sbjct: 243 SDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNP-KRKA 301
Query: 361 PENTPKATTNKKSKAGGGG 379
E+ K + NKK K G G
Sbjct: 302 EED--KKSANKKVKTAGRG 318
>gi|265141450|gb|ACY74444.1| flap endonuclease [Carukia barnesi]
Length = 236
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 186/237 (78%), Gaps = 1/237 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+KLLAD+A SMKE + ++YFGRKIAIDASMSIYQFLI V G++ LTNE GE
Sbjct: 1 MGIHGLSKLLADHASGSMKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQ-LTNEEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RTIR++E G+KP+YVFDG+PP++K EL KR +R +A L A E G+
Sbjct: 60 TTSHLMGIFYRTIRMVENGIKPLYVFDGKPPEMKSGELTKRTERREEAQKQLEVAQETGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+IEKFS+R VKVT+QHN++CK+LLKLMG+P +EAP EAEAQCA L K G+V+A A+ED
Sbjct: 120 TENIEKFSRRLVKVTQQHNNECKQLLKLMGIPYIEAPCEAEAQCAELVKGGKVFAAATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
MD LTFG+ LRHL +RK+P+ E+ + K+L+ L L+ D+FIDLCIL GCDYC+
Sbjct: 180 MDCLTFGSNVMLRHLTFSEARKMPIQEYHLPKVLDGLGLSQDEFIDLCILLGCDYCE 236
>gi|146423306|ref|XP_001487583.1| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/317 (46%), Positives = 214/317 (67%), Gaps = 5/317 (1%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
M +YQ+LI V ++ + LT+E GE TSHL GMF RTIRL+E G+KP+YVFDG+PP LK
Sbjct: 1 MCLYQYLIAVRQSDGQQLTSEDGETTSHLLGMFYRTIRLVENGIKPMYVFDGKPPVLKGG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
EL KR ++ +A + + E++ ++ KR+V+VTK+ N++ K+LL+LMG+P V+A
Sbjct: 61 ELEKRMIRKKEALKQQEDIKDTATVEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
P EAEAQCA L +G+V+A ASEDMD+L + P LRHL +RK+P+ + + K +E
Sbjct: 121 PCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAMEG 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIP 272
L + FIDLCIL GCDYC++I+G+G TA KLI++HGS++ I+ EN + ++++P
Sbjct: 181 LEMDKQTFIDLCILLGCDYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKVP 240
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
E+WPY EAR LF P+V +E + +KW P + L+ F+V + GF+ DRV EK+K
Sbjct: 241 ENWPYAEARELFLNPDVSPGKE-INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKK 299
Query: 333 AKNKSSQGRLESFFKPV 349
QGRL+ FF V
Sbjct: 300 GLKGGVQGRLDGFFSVV 316
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 240/396 (60%), Gaps = 30/396 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-----GRTGTEMLT 55
MGI L L+ + APK++K + G+ +A DASM+IYQFLI G +EM
Sbjct: 1 MGIHKLMTLIQEKAPKAVKTINLDLLTGKTVACDASMAIYQFLIATQSMKQGMGISEMRD 60
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
+E G +T HL G+F RTI+ +E G+KPI+VFDG+PP+LK L +R + A +
Sbjct: 61 SE-GNLTGHLVGLFHRTIQFMENGVKPIWVFDGKPPELKSYVLDQRKENKEKAEETKQTM 119
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
++AG+ E ++ + R+++VT + +D K+LL+LMG PVVEAP EAEAQCA + K G YA
Sbjct: 120 IDAGDLEGAKRMAGRSIRVTPEMMEDAKKLLRLMGTPVVEAPGEAEAQCAVIVKHGLAYA 179
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
ASEDMDSLTFG LR +S+K P+++ ++A++LE NL +QFIDLCIL GCDY
Sbjct: 180 TASEDMDSLTFGTNVLLRGF---NSKKEPIIQIDLAQVLEGFNLNHEQFIDLCILCGCDY 236
Query: 236 CDSIRGIGGQTALKLIRQH-GSIETILENINRE--------RYQIPEDWPYQEARRLFKE 286
+I G+G A K I + G+IE ++ I +E +Y IPE + Y+EAR LFK
Sbjct: 237 TTNIPGVGPVKAFKFISEEGGTIENVISRIEKENDDPKKKKKYTIPETFYYKEARELFKV 296
Query: 287 PEVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
P ++D +L+ IK++ PDE L FLV+ GF +V I+K+KA K++Q RL+
Sbjct: 297 PSAISDIAELEKIIKFNKPDEVALKEFLVTSKGFQEIKVENGIKKLKATAGKTNQARLDC 356
Query: 345 FFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGG 380
FFK ++ + K +KKS G G G
Sbjct: 357 FFKGAGTKTSSTQSK----------DKKSIGGNGSG 382
>gi|430813459|emb|CCJ29208.1| unnamed protein product [Pneumocystis jirovecii]
Length = 278
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 194/269 (72%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+ L +LL + A S+K + YFGRK+AIDASMSIYQFL+ V + + L N+ GE
Sbjct: 1 MGIRHLHQLLEEFASSSIKSYDIDHYFGRKVAIDASMSIYQFLVAVRQRDGQQLMNKTGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G+F RT+R+ + G++P YVFDG PP LK ELAKR +R A EA EA +
Sbjct: 61 TTSHLMGIFYRTLRMCDNGIRPCYVFDGTPPKLKSGELAKRSERREKAAKSYLEAKEADS 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+ KFS+RTV++T++HN++CK+LLKLMG+P V+AP EAEAQCAAL K+G+VYA ASED
Sbjct: 121 IEDMNKFSRRTVRMTREHNEECKKLLKLMGIPYVDAPCEAEAQCAALAKAGKVYAAASED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD L F P LRHL +K P+ E + K L+ELN+ ++QF+DLCIL GCDYC+ I+
Sbjct: 181 MDILCFSTPILLRHLTFSEQKKEPITEVNLEKALKELNMPLEQFVDLCILLGCDYCEPIK 240
Query: 241 GIGGQTALKLIRQHGSIETILENINRERY 269
GIG + AL+LIR++ S++ + ++ +Y
Sbjct: 241 GIGPKRALELIREYKSLDAFINFADKSKY 269
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/266 (51%), Positives = 202/266 (75%), Gaps = 1/266 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L+K++ D++P S++ ++F+ YFGRK+A+DASM +YQFLI V + G+++ T E+GE
Sbjct: 1 MGVKDLSKVIGDHSPNSIRLKEFKGYFGRKVAVDASMCLYQFLIAVRQDGSQLQT-ESGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+++ G+KP+YVFDG+PP +K EL KR +R +A +AVE G+
Sbjct: 60 TTSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKASELEKRTERRTEAEKQRNDAVELGD 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + KF +R VKVTK+ N++ KRL+ LMG+P+++AP EAEAQCAAL K+G+V+A SED
Sbjct: 120 EASVNKFERRLVKVTKEQNEEAKRLVTLMGIPILDAPCEAEAQCAALAKAGKVFATVSED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFG+P LR ++ ++K+PV E + ++L++ + M QF+DLCIL GCDY +IR
Sbjct: 180 MDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIR 239
Query: 241 GIGGQTALKLIRQHGSIETILENINR 266
GIG + A +LI+++ IE +LE IN+
Sbjct: 240 GIGPKKAFELIKKYECIENVLEAINQ 265
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 141/261 (54%), Positives = 192/261 (73%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L ++++ +PK++K +S FGRK+AIDASMSIYQFLI V + E L ++ GE
Sbjct: 1 MGIKALANVISEESPKAIKHTDIKSLFGRKVAIDASMSIYQFLIAVRQRDGEQLMSDTGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP YVFDG+PPDLK L R+ KR DAT+ EA E G+
Sbjct: 61 TTSHLMGFFYRTLRMVDNGIKPCYVFDGKPPDLKSNVLKSRFEKREDATEQGEEAKETGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E I++ S+RTV+VTK+HN +C++LL+LMG+PVVEAPSEAEAQCA L + G+V+A SED
Sbjct: 121 AETIDRLSRRTVRVTKEHNMECRKLLRLMGIPVVEAPSEAEAQCAELVRGGKVWAAGSED 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAP LRHL +K P+ + + + L L + +QF DLCIL GCDY + ++
Sbjct: 181 MDTLTFGAPILLRHLTFSEQKKEPISHYYLEEALTGLEMGREQFTDLCILLGCDYLEPVK 240
Query: 241 GIGGQTALKLIRQHGSIETIL 261
G+G TALKLIR++GS++ I+
Sbjct: 241 GVGPSTALKLIREYGSLDEIV 261
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 271 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 330
IP+ WPY+ AR LF +P V + +E +++ W PD +GL+ FL E GF DRV K +++
Sbjct: 325 IPDFWPYERARELFLKPNVQSADE-VELNWEHPDVDGLVQFLCHEKGFAEDRVRKGADRL 383
Query: 331 KAAKNKSSQGRLESFFK--PVAN 351
N QGRL+SFF P AN
Sbjct: 384 IKMLNTKQQGRLDSFFSVIPKAN 406
>gi|397621116|gb|EJK66115.1| hypothetical protein THAOC_12982 [Thalassiosira oceanica]
Length = 434
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 181/394 (45%), Positives = 241/394 (61%), Gaps = 50/394 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGT-----EMLT 55
MGIKGL KLL+D AP S++E S GRKIA+DASM+IYQ LI + R+G +LT
Sbjct: 1 MGIKGLAKLLSDEAPDSIREVPLSSLHGRKIAVDASMAIYQMLIAI-RSGNPNMAATVLT 59
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
N GE TSH+QG+F RTI+ + G++P+YVFDG+PP K EL KR KR A + L A
Sbjct: 60 NADGETTSHIQGIFNRTIKFITEGIRPVYVFDGKPPSFKSGELLKRREKRQKAEEALKAA 119
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E+G+ E+ +K +KR V+ + N+D KRLL LMGVP++ AP EAEAQ AAL K+G+VYA
Sbjct: 120 EESGDVEEQDKHTKRLVRAGHKENEDIKRLLTLMGVPIINAPCEAEAQAAALAKAGKVYA 179
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
A+EDMD+LTF P +R + + + + E +K L L L DQF+DLCIL GCDY
Sbjct: 180 TATEDMDALTFQTPIQVRKMTFAKASQAEIQEVNYSKALIGLGLNHDQFVDLCILLGCDY 239
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP------------------- 276
CD+I+GIG +TALKLI++H +IETIL+ +NRE+Y +PE +
Sbjct: 240 CDTIKGIGPKTALKLIKEHNNIETILKTLNREKYTVPESYEPNVAARKRQLEEDGDSDNE 299
Query: 277 ----------------------YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
Y EAR+LF EV+ D E +++KW E L FLV
Sbjct: 300 DATAKTGKPKTEGEEDEEILPVYVEARKLFNSHEVLPDSE-IELKWKDCQPEQLKAFLVD 358
Query: 315 ENGFNSDRVTKAIEKIKAAK--NKSSQGRLESFF 346
E GFN +RV IEK++ A +K Q R++SFF
Sbjct: 359 EMGFNPERVQSNIEKLQKAHKTSKKPQMRMDSFF 392
>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
Length = 308
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 143/287 (49%), Positives = 195/287 (67%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L L+ + APK++K +F++ GR IA+D S ++YQFL +G L N GE
Sbjct: 16 MGVKKLRSLIEEQAPKAIKNTEFKALEGRIIAVDTSNNLYQFLTAIGTENGSSLMNSIGE 75
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHLQG F RTI+ + G+KP++VFDG PP LK ELAKR +K+ +A ++L EA E G
Sbjct: 76 TTSHLQGTFYRTIKFMSNGIKPVFVFDGAPPTLKSGELAKRSAKKKEAKENLDEAKETGT 135
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+ KFSKRT T++ N++C +LL LMG+PVV AP EAEAQCA L K G+ +A SED
Sbjct: 136 TEDVAKFSKRTTSATRKQNEECIKLLTLMGIPVVRAPCEAEAQCAELVKGGKAWASGSED 195
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSL FG LR+L +K P+ EF+ K+L T DQFIDLCIL GCDYC+SIR
Sbjct: 196 MDSLAFGTKILLRNLTASDQKKNPLWEFDHEKLLYGTGFTHDQFIDLCILLGCDYCESIR 255
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
GIG A +L+++H SIE ++++++ +Y +P +P+ EAR +EP
Sbjct: 256 GIGPVRAFELMQKHKSIEEVVKHLDPTKYPVPVPFPFDEAREPIQEP 302
>gi|340506781|gb|EGR32852.1| hypothetical protein IMG5_068750 [Ichthyophthirius multifiliis]
Length = 348
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 221/338 (65%), Gaps = 15/338 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG---TEMLTNE 57
MGI L LL + APK +K + Y GR++A DASM++YQFL + LT++
Sbjct: 1 MGIHKLMDLLREKAPKCIKTADLKFYGGRQVACDASMAMYQFLATTSSSSDFQIYNLTDK 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G T+HL G+F RT+ L+++G+KP ++FDG+PP+ K EL KR +A+A + A++
Sbjct: 61 DGNKTAHLVGLFNRTVMLIDSGIKPAWIFDGKPPEFKSGELTKRQKAKANALEKQKAALD 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ E+ K +R + +TK +D ++L+L+GVPV++AP EAEAQCAAL K+ +V+A
Sbjct: 121 IGDMEEALKMEQRNLFITKDMKNDAIKMLQLLGVPVIQAPCEAEAQCAALTKAKKVFATV 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTFG P LR L +S+K P++E + +L+EL LT +QF+DLCIL GCDY
Sbjct: 181 TEDMDALTFGTPTLLRGL---NSKKEPIIEIDYNLMLQELELTQEQFVDLCILCGCDYLV 237
Query: 238 SIRGIGGQTALKLIRQHGSIETIL--------ENINRERYQIPEDWPYQEARRLFKEPEV 289
I GIG TA KLI++H ++E ++ EN +++++IP ++ Y AR LF P V
Sbjct: 238 RIDGIGPITAYKLIKEHLTLENVIAYMEKANDENSKKQKFKIPSEYNYVGARDLFFNP-V 296
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
+ D E++++KW+ PD EGL FLV E GFN DRV +
Sbjct: 297 IEDPEKMELKWTKPDIEGLKQFLVQEKGFNEDRVMNQV 334
>gi|323454359|gb|EGB10229.1| hypothetical protein AURANDRAFT_53007 [Aureococcus anophagefferens]
Length = 538
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 165/393 (41%), Positives = 227/393 (57%), Gaps = 22/393 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGL + DNAP ++ E + Y GR++A+DASM +Y FL + RTG + LTN
Sbjct: 1 MGIKGLFPYIRDNAPGAIVETSLKDYMGRRLAVDASMHLYSFLAAI-RTGGDATHLTNSR 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSHLQG RT+R+LEAG KP++VFDG P+LK + L R + A + LA A +A
Sbjct: 60 GEATSHLQGFANRTLRMLEAGAKPVFVFDGAAPELKGKTLKGRSEAKRAAEEKLARARDA 119
Query: 119 ---GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E++ K + + +VT+QHNDD KRLL+LMGVPVVEAP EAEA C AL + G
Sbjct: 120 DSGATTEEVYKAASASTRVTRQHNDDVKRLLRLMGVPVVEAPGEAEASCVALVRHGACDF 179
Query: 176 VASEDMDSLTFGAPRFLRHLMD----PSSRKIPVMEFEVAKILEELNL----TMDQFIDL 227
V +EDMD+LTFGA + +++L D + K P E ++A L EL TM F+D
Sbjct: 180 VVTEDMDALTFGAAKMVKNLFDVEGARAKEKRPAYEIDLAAALRELGPRGLGTMAAFVDF 239
Query: 228 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLF 284
CIL GCDY D + G+G TA KL++ H S+E + + R+ R P W ++ AR LF
Sbjct: 240 CILCGCDYLDHVPGVGPATAAKLLKSHASLERAVVRVGRKVGGRPVAPHGWDFRAARALF 299
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
P VV E + PD L FLV + FN DRV K + +++ + Q R++
Sbjct: 300 FAPTVVAAGE--TVDAPPPDYAALRAFLVDGHEFNGDRVDKMVARLRKCREAKPQKRIDD 357
Query: 345 FF--KPVANTS-APIKRKEPENTPKATTNKKSK 374
FF P + +P ++EPE K + +K
Sbjct: 358 FFSKSPAKGPARSPPAKREPEPAAKPEPDGAAK 390
>gi|38488751|ref|NP_942115.1| flap endonuclease 1 [Danio rerio]
gi|29436437|gb|AAH49413.1| Flap structure-specific endonuclease 1 [Danio rerio]
Length = 330
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/229 (61%), Positives = 177/229 (77%), Gaps = 1/229 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD+AP ++KE + +SYFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADHAPSAIKEHEIKSYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+VYA A+ED
Sbjct: 120 QENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGKVYATATED 179
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 229
MD LTFG LRHL ++K+P+ EF ++IL+++ LT Q +D +
Sbjct: 180 MDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQAVDTSV 228
>gi|384485605|gb|EIE77785.1| hypothetical protein RO3G_02489 [Rhizopus delemar RA 99-880]
Length = 496
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 230/369 (62%), Gaps = 50/369 (13%)
Query: 8 KLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG 67
+L+++++P+++K + +++FGRK+AIDASMSIYQF+I V + ++L NE GE TSHL G
Sbjct: 174 RLISEHSPEAIKSYEIKNFFGRKVAIDASMSIYQFMIAVRQQDGQVLQNEEGETTSHLMG 233
Query: 68 MFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKF 127
MF RT+R+++ G+KP+YVFDG+PP LK ELAKR +++ +A + + EA E G D+ ++
Sbjct: 234 MFYRTVRMVDNGIKPVYVFDGKPPTLKSGELAKRKARKEEAQEKMEEANEIGTAADVTRY 293
Query: 128 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
+KRTVKVT +HN++CKRLLK MG+P VEAP EAEAQCA L + G+VYA ASEDMD+LTF
Sbjct: 294 TKRTVKVTSEHNNECKRLLKAMGIPYVEAPCEAEAQCAELARGGKVYAAASEDMDTLTFK 353
Query: 188 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
AP LRHL +RK+P+ E + K L + L MDQ
Sbjct: 354 APILLRHLTFSEARKMPIDEVNLEKALAGMGLDMDQ------------------------ 389
Query: 248 LKLIRQHGSIETILENIN-RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 306
+H +I+ +++++ R + IP++W Y +AR LF +PEV E
Sbjct: 390 -----EHKTIDEAIKHLSQRLKDGIPKEWNYADARELFTKPEVTPASE------------ 432
Query: 307 GLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTP- 365
+ + N DR+ K EK+ +++Q R++ FFK + +T+ P K++E E P
Sbjct: 433 ------IEASAINEDRIRKGCEKLAKNLKQATQTRVQDFFKTIPSTT-PKKKREAEAAPK 485
Query: 366 KATTNKKSK 374
K TT+K+ +
Sbjct: 486 KGTTSKRGR 494
>gi|403222552|dbj|BAM40684.1| 5'-3' exonuclease [Theileria orientalis strain Shintoku]
Length = 824
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 219/347 (63%), Gaps = 10/347 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGT-EMLTNEAG 59
MGIKGL L + P SM E ES G IA+DAS ++YQF I + + L N +G
Sbjct: 1 MGIKGLIPFLNEKVPGSMTEMSLESLSGESIAVDASTALYQFTIAIRDSSYFSSLVNASG 60
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E TSHL GM +R +LLE G+KP++VFD +PP+LK + L KR +R +A+ L +A+ G
Sbjct: 61 ESTSHLYGMMSRCSKLLECGIKPVFVFDSKPPELKLKTLEKRRQRREEASTSLKQAIAEG 120
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+KE I+K RTVKVTK+ ND K+LL+LMGVPV+EAP EAEAQCA L ++ VASE
Sbjct: 121 DKESIKKLMGRTVKVTKEMNDSAKKLLRLMGVPVIEAPEEAEAQCAYLVRNSLCRFVASE 180
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+L FG LR++ S++KI ++ ++ K L+ L+LT +QF+D CIL GCDYCD++
Sbjct: 181 DTDTLAFGGGYLLRNVTASSNKKI--VKVDLQKALKGLDLTFEQFVDFCILCGCDYCDTL 238
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
G+G +TA L+++H S+E I+ + Y ++EA+ F P+ V D +Q +K
Sbjct: 239 EGVGPKTAYTLVKRHASLEEIV-STKGGNYD-----DFREAKEYFMAPK-VNDFDQASVK 291
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
D E L +FLV+EN F +RV K +EK+ + K Q L SF
Sbjct: 292 MGTLDPEALTDFLVNENNFAKERVDKFVEKLLKFRGKKVQTSLLSFL 338
>gi|255634418|gb|ACU17574.1| unknown [Glycine max]
Length = 151
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/151 (91%), Positives = 148/151 (98%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLTKLLADNAPKSMKE KFESYFGRKIAIDASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRA+AT+DL+EA+E N
Sbjct: 61 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
KEDIEKFSKRTVKVTKQHNDDCKRLL+LMGV
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGV 151
>gi|170119612|ref|XP_001890929.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374866|sp|B0E412.1|FEN12_LACBS RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|164633979|gb|EDQ98419.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 469
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 145/269 (53%), Positives = 201/269 (74%), Gaps = 7/269 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL+ +APK++KE K + FGRK+AIDASMSIYQFLI V + E+LTN+AGE
Sbjct: 1 MGIKGLTGLLSQHAPKAIKEIK--TLFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGE 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T +L G+F RT+R++E G+KP Y+FDG+PP+LKK L+KR +R +A ++ EA E G
Sbjct: 59 TTRYLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKRLERREEAKEEGEEAKETGT 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV-----YA 175
ED+++FS+RTVKVT++HN +C+RLL+LMG+PVV APSEAEAQCA L + G+V YA
Sbjct: 119 VEDVDRFSRRTVKVTREHNQECQRLLRLMGIPVVIAPSEAEAQCAELARGGKVYIALYYA 178
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
SEDMD+LTF AP RHL ++K P+ E + + LE + FIDLCIL GCDY
Sbjct: 179 AGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLKEALEGPLYSFPTFIDLCILLGCDY 238
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENI 264
+ I+G+G ++ALKLIR++G ++ +++++
Sbjct: 239 LEPIKGVGPKSALKLIREYGGLKGVVKHL 267
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE+WP++EA+++FK P V + ++W+ PD +GL+ FLV+E GFN DRV K EK
Sbjct: 348 QIPEEWPWEEAKKIFKRPSHVHRD----LEWTNPDVDGLVQFLVNEKGFNEDRVRKGAEK 403
Query: 330 IKAAKNKSSQGRLESFF--KPVANTSAP 355
++ N QGRL+ FF KP +AP
Sbjct: 404 LQKFLNSKQQGRLDGFFSVKPKEKAAAP 431
>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
Length = 361
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/360 (41%), Positives = 222/360 (61%), Gaps = 3/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+ + AP ++ ++ + Y + IAIDAS+ +YQF+ + L N +GE
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGAALANSSGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+ + IR+ EAG+KPI+VFDG+PP+ K+ EL KR R A + +A E GN
Sbjct: 61 VTSHLVGLLAKVIRMAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E ++ S+RTVKVT+QH +RLL ++G+P + A EAEAQC A+ K VAS D
Sbjct: 121 LERAKQLSRRTVKVTQQHCKQAERLLDVLGIPYIIAAGEAEAQCVAMAKERLCEGVASSD 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
+D L FG+P +R+L R+I ME + +L+EL + D+F+DLCIL GCDY +S+
Sbjct: 181 LDVLAFGSPCLIRNLAQGGDREI--MEINLNIVLKELGFSYDEFLDLCILCGCDYANSLE 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE-QLQIK 299
GIG +TA KLI +H SIE +L + + +WPY AR LFK PE++ +E + +K
Sbjct: 239 GIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWPYVRARELFKNPEIIDPKEIKKTLK 298
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
W + + FLV E F+ + K ++K+ AA+ + Q ++SFF ++ S IK K
Sbjct: 299 WKPVNRSEAMQFLVEEMEFDREATEKKLDKLVAARKRPKQCTIDSFFSARSSDSEVIKTK 358
>gi|443924990|gb|ELU43928.1| FEN-1 endonuclease [Rhizoctonia solani AG-1 IA]
Length = 532
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/281 (50%), Positives = 189/281 (67%), Gaps = 34/281 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT LL+++AP S+KE ++ FGRK+AIDASMSIYQFLI V + +MLTNEAGE
Sbjct: 1 MGIKGLTGLLSEHAPASIKEHDIKTLFGRKVAIDASMSIYQFLIAVRQQDGQMLTNEAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RT+R+++ G+KP YVFDG+PPDLK L+KR+ R A +D EA E G
Sbjct: 61 TTSHLMGFFYRTLRMVDHGIKPAYVFDGKPPDLKSGVLSKRFEGRQKAKEDGEEAKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVP--------------------VVEAPSEA 160
ED+EKF++RTV+VT++HN++C++LLKLMG+P +V+APSEA
Sbjct: 121 AEDVEKFARRTVRVTREHNEECRKLLKLMGIPCVVVSNIVLIHARAQLANTSIVQAPSEA 180
Query: 161 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLT 220
EAQCA L + G+VYA SEDMD+LTF AP RHL ++K P+ E + K LE L +
Sbjct: 181 EAQCAELARGGKVYAAGSEDMDTLTFNAPVLYRHLTFSEAKKAPISEIVLEKALEGLGMN 240
Query: 221 MDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
M+Q I+G+G + A KL+++HGS+E +L
Sbjct: 241 MEQ--------------PIKGVGPKNAFKLMQEHGSLEEVL 267
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 25/91 (27%)
Query: 264 INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
+ R +P+ +P++EA++LF +P+V T +Q++ RV
Sbjct: 428 VRRGGIHVPDYYPWEEAKKLFLQPDV-TPADQVE------------------------RV 462
Query: 324 TKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
K EK+ N QGRL+ FFK + S+
Sbjct: 463 RKGAEKLTKMLNTKQQGRLDGFFKVTESASS 493
>gi|145514173|ref|XP_001442997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124467070|sp|A0CXT3.1|FEN11_PARTE RecName: Full=Flap endonuclease 1-1; Short=FEN-1-1; AltName:
Full=Flap structure-specific endonuclease 1-1
gi|124410358|emb|CAK75600.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 218/369 (59%), Gaps = 18/369 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLI---VVGRTGTEMLTNE 57
MGI L + L + AP + + + GR I DASM++YQFLI G+T LT++
Sbjct: 1 MGIHQLMQFLKEKAPNCFRTLMLDYFAGRTIGCDASMAMYQFLIQTQSAGQTQIIELTDK 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G T HL G+F RT++ LE G+KP++VFDG+PP LK ELA+R + +A A+E
Sbjct: 61 DGNRTGHLVGLFNRTLQFLENGIKPVWVFDGKPPLLKSGELARRKKLKEEAQVKTELALE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ + +RT ++ +D ++LKLMG PV+ AP EAEAQCA LC++G++YA A
Sbjct: 121 QGDMQQALLQHQRTTTISSVMKEDAIKMLKLMGCPVIIAPCEAEAQCAELCRAGKIYATA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTF P LR +++K P+ E +++EL +T +QF+DLCIL GCDY +
Sbjct: 181 TEDMDALTFRTPVLLRGF---NTKKEPIYEIIYDDMMKELEITYEQFVDLCILCGCDYTE 237
Query: 238 SIRGIGGQTALKLIRQHGSIETILEN---INRER--------YQIPEDWPYQEARRLFKE 286
I GIG TA KLI++ SIE ILE+ +N ER Y +P + YQ++R LF
Sbjct: 238 KIEGIGPGTAYKLIKEFKSIEGILEHVQKVNAEREKNKQNPKYTVPTKFLYQDSRELFIT 297
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P +V E++Q+ W+ PD E L FLV E GF R+ +++I Q RLE+FF
Sbjct: 298 P-LVQKGEEIQLTWNKPDVENLKKFLVEEKGFAESRIDNGLKRIAKKDTTGFQSRLENFF 356
Query: 347 KPVANTSAP 355
P
Sbjct: 357 GKTTKIIHP 365
>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
gi|317374902|sp|A8B672.1|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
Length = 361
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/349 (42%), Positives = 215/349 (61%), Gaps = 3/349 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+ + AP ++ ++ + Y + IAIDAS+ +YQF+ + L N +GE
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRLIQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+ + IRL EAG+KPI+VFDG+PP+ K+ EL KR R A + +A E GN
Sbjct: 61 VTSHLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGN 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E ++ S+RTVKVT+QH +RLL +G+P V A EAEAQC A+ K VAS D
Sbjct: 121 LERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVCEGVASSD 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
+D L FG+P +R+L R+I +E + +L+EL + D+F+DLCIL GCDY +S+
Sbjct: 181 LDVLAFGSPCLIRNLAQGGDREI--VEINLNTVLKELGFSYDEFLDLCILCGCDYANSLE 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE-QLQIK 299
GIG +TA KLI +H SIE +L + + +WPY AR LFK P V+ +E + +K
Sbjct: 239 GIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWPYVRARELFKNPAVIDPKEIKKTLK 298
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 348
W + + FLV E F+ + K ++K+ AA+ K Q ++SFF P
Sbjct: 299 WKPVNRGEAMQFLVEEMEFDRETTEKKLDKLVAARKKPKQCTIDSFFSP 347
>gi|357601961|gb|EHJ63212.1| flap endonuclease-1 [Danaus plexippus]
Length = 266
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 188/261 (72%), Gaps = 4/261 (1%)
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G+ I+KF++R VKVT+QH + ++LLKLMG+PVVEAP EAEAQCA L K G+VYAVA+
Sbjct: 6 GDTASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVEAPCEAEAQCAELVKGGKVYAVAT 65
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
EDMD+LTFGA LRHL +RK+PV EF + ++L L L +FIDLCIL GCDYC S
Sbjct: 66 EDMDALTFGANVLLRHLTFSEARKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGS 125
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
I+GIG + A++LI+QH SIE +L NI+ ++Y PE+W Y+ ARRLF++PE VT+ + +++
Sbjct: 126 IKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPE-VTEAKDVEL 184
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 358
KWS PDEEGL+ FL + FN +RV +K+ A+ ++QGRL+ FFK ++ T P KR
Sbjct: 185 KWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNP-KR 243
Query: 359 KEPENTPKATTNKKSKAGGGG 379
K E+ K + NKK K G G
Sbjct: 244 KAEED--KKSANKKVKTAGRG 262
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 219/357 (61%), Gaps = 22/357 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI LT+LL + APKS++ + E Y G K+AIDASM +YQ L+ + R G + L N+ GE
Sbjct: 1 MGICKLTELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAI-RYGMDNLKNKNGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T+H+ G+F +TI LLE G+ P+Y+FDGQPP+LK+ L +R ++ A DL EAV
Sbjct: 60 TTAHIYGIFYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEAV---T 116
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+ K +KRTV+ TK H + + LLK+MG+P + AP+EAE CAAL G V V SED
Sbjct: 117 EEEKVKHAKRTVRATKYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSED 176
Query: 181 MDSLTFGAPRFLRHLMDP-SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
MDSL FG LR+ +K+ VME + +L++ L +FID+CIL GCDYC +
Sbjct: 177 MDSLAFGGKILLRNFFPALMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKL 236
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPED-WPYQEARRLFK-----EPEVVTDE 293
+G+G + L+++H SIE +LEN R +PE+ WPY +AR +F +P V +
Sbjct: 237 KGMGPKKVYDLVQEHRSIEKLLEN---GRVTMPEEGWPYIQAREIFTSQDAGKPPVFS-- 291
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
S PD + ++ FLV ENGF++ +V AIE+++A Q L F K V
Sbjct: 292 ------LSPPDVKEILQFLVEENGFDTKKVETAIERLQAQNKTKKQSSLLMFAKKVV 342
>gi|145514642|ref|XP_001443226.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124447858|sp|A0CYG2.1|FEN12_PARTE RecName: Full=Flap endonuclease 1-2; Short=FEN-1-2; AltName:
Full=Flap structure-specific endonuclease 1-2
gi|124410604|emb|CAK75829.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 219/369 (59%), Gaps = 18/369 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLI---VVGRTGTEMLTNE 57
MGI L + L + AP + + + GR I DASM++YQFLI G T LT++
Sbjct: 1 MGIHQLMQFLKEKAPNCFRTLMLDYFAGRTIGCDASMAMYQFLIQTQSAGLTQIIELTDK 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G T HL G+F RT++ LE G+KP++VFDG+PP LK ELA+R + +A A+E
Sbjct: 61 EGNRTGHLVGLFNRTLQFLENGIKPVWVFDGKPPLLKSGELARRKKLKEEAKVKTELALE 120
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+ + ++RT ++ +D ++L+LMG PV+ AP EAEAQCA LC++G++YA A
Sbjct: 121 QGDMQQALLQNQRTTTISSIMKEDAIKMLQLMGCPVIIAPCEAEAQCAELCRAGKIYATA 180
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+EDMD+LTF P LR +++K P+ E +++EL LT +QF+DLCIL GCDY +
Sbjct: 181 TEDMDALTFRTPVLLRGF---NTKKEPIYEIIYDDMIKELELTYEQFVDLCILCGCDYTE 237
Query: 238 SIRGIGGQTALKLIRQHGSIETILEN---INRER--------YQIPEDWPYQEARRLFKE 286
I GIG TA KLI+++ SIE ILE+ +N ER Y +P + YQ++R LF
Sbjct: 238 KIEGIGPGTAYKLIKEYKSIEGILEHVQKVNAEREKNNQNPKYTVPSKFLYQDSRELFIT 297
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P +V ++LQ+ W+ PD + L FL+ E GF R+ +++I Q RLE+FF
Sbjct: 298 P-LVQKGDELQLTWNKPDVDNLKKFLIEEKGFAESRIDNGLKRIAKKDPAGFQSRLENFF 356
Query: 347 KPVANTSAP 355
P
Sbjct: 357 GKTTKIIHP 365
>gi|399218750|emb|CCF75637.1| unnamed protein product [Babesia microti strain RI]
Length = 452
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 226/368 (61%), Gaps = 20/368 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV--GRTGTEMLTNEA 58
MGIKGLTKL+ +NAP+ +E + G+ IAIDASM++YQF+I + G T L N
Sbjct: 1 MGIKGLTKLILENAPEGYQEITLANLSGQIIAIDASMTLYQFMIAIRQGNFATS-LVNAN 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ R LLE G++PIYVFDG+PP K L KR ++ +A L +A+E
Sbjct: 60 GEPTSHIAGLMLRVAALLELGIRPIYVFDGEPPQAKSDTLLKRKERKEEALKLLEQAMET 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G+ E+I+K + RTV+V+++ + + L+L G+PVVEA EAEAQCA + K G ++
Sbjct: 120 GDLEEIKKQTSRTVRVSREQSKQAMKFLELCGLPVVEASQEAEAQCAYMVKWGIADVAST 179
Query: 179 EDMDSLTFGAPRFLRHL-------------MDPSSRKIPVMEFEVAKILEELNLTMDQFI 225
ED D LTFG P +R+L + S K ++ ++ K L L ++QF+
Sbjct: 180 EDTDCLTFGTPVLIRNLSNALAISSNKNSKFNSKSPKSHLLRIDLNKTLNGFKLNINQFV 239
Query: 226 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 285
DLCIL GCDYC ++G+G +TAL L++++ +IE I+ ++E I E++ Y+ AR F
Sbjct: 240 DLCILCGCDYCGKLKGVGPKTALSLLQKYKTIEEIIA--HKEITCIDENFDYKMARDAFL 297
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
P++V EE ++++W P+ LI+FLV +N FN DRV K I K+ + Q ++ SF
Sbjct: 298 SPKIVPKEE-IKLEWREPNIPELIDFLVVKNNFNQDRVNKFINKLINIRKVKPQQQISSF 356
Query: 346 FKPVANTS 353
FK NTS
Sbjct: 357 FK-AKNTS 363
>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
gi|74952859|sp|Q4UFP0.1|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
Length = 506
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/383 (40%), Positives = 223/383 (58%), Gaps = 13/383 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGT-EMLTNEAG 59
MGIKGL L++ P S+ E E G +AIDAS ++YQF I + + L N G
Sbjct: 1 MGIKGLIPFLSEKVPSSISELSLECLSGESLAIDASAALYQFTIAIRDSSYFSSLVNSKG 60
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E TSH+ G+ R +LLE G+KP++VFD +PP+LK + L KR KR +A D +A+ G
Sbjct: 61 ESTSHIYGLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQKREEAKTDFKKAISEG 120
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+KE +K RTVKVTK ND K+LL+LMG+PV+EA EAEAQCA L + VASE
Sbjct: 121 DKESAKKLVGRTVKVTKDMNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFVASE 180
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+L FG LR++ +++KI ++ ++ K+L+ L DQF+D CIL GCDYCD++
Sbjct: 181 DTDTLVFGGWFLLRNVTSSANKKI--VKVDLQKVLDGLEFNFDQFVDFCILCGCDYCDTL 238
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
G+G +TA L++++ S+E I+ R++ + ++EA+ F P+V +E +K
Sbjct: 239 EGVGPKTAYSLVKKYQSLEEIV------RFKGGDYDEFKEAKDYFLSPKVNEYDEN-SVK 291
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
D EGL FLV EN F+ +RV K IEK+ K K Q L SF + N K K
Sbjct: 292 MGTIDPEGLTEFLVQENNFSKERVEKFIEKLLKFKTKKIQTSLLSF---LTNPQPTNKSK 348
Query: 360 EPENTPKATTNKKSKAGGGGGRK 382
+ PK ++ + K K
Sbjct: 349 SLDEGPKQSSTEDYKVNTNPSTK 371
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 220/360 (61%), Gaps = 3/360 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL KL+ + AP ++ ++ + Y R IAIDAS+ +YQF+ + L N +GE
Sbjct: 1 MGIRGLAKLIEEIAPAAVSKRLIQHYCNRVIAIDASVMLYQFITTITSGDGTALANSSGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+ ++ R++EAG+KPI+VFDG+PP+ K+ EL KR R A + +A E G+
Sbjct: 61 ITSHLVGLLSKVTRMVEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAEEEGD 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E ++ S+RTVKVT+QH ++LL ++G+P V A EAEAQC A+ K+G VAS D
Sbjct: 121 IERAKQLSRRTVKVTQQHCKQAEKLLDILGIPYVVAAGEAEAQCVAMAKAGLCEGVASSD 180
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
+D L FG+P +R+L ++I ME + +L EL + D+F+DLCIL GCDY +S+
Sbjct: 181 LDVLAFGSPSLIRNLAQGGDKEI--MEINLDTVLNELGFSYDEFLDLCILCGCDYANSLE 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE-QLQIK 299
GIG +TA KLI ++ SIE L + + +WPY AR LFK P V+ +E + IK
Sbjct: 239 GIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVNWPYARARELFKNPTVINPKEIKKTIK 298
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 359
W + + FLV E F+ + K ++K+ AA+ K Q ++SF + +S K K
Sbjct: 299 WRPINRSEAMQFLVEEMEFDREATEKKLDKLVAARKKPKQCTIDSFVTVRSPSSEATKTK 358
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 221/351 (62%), Gaps = 23/351 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI LT+LL + APKS++ + E Y G K+AIDASM +YQ L+ + R G + L N+ GE
Sbjct: 1 MGICKLTELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAI-RYGMDNLKNKNGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T+H+ G+F +TI LLE G+ P+Y+FDGQPP+LK+ L +R ++ A DL EAV
Sbjct: 60 TTAHIYGIFYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEAV---T 116
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+ K +KRTV+ TK H + + LLK+MG+P + AP+EAE CAAL G V V SED
Sbjct: 117 EEEKVKHAKRTVRATKYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSED 176
Query: 181 MDSLTFGAPRFLRHLMDP-SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
MDSL FG LR+ +K+ VME + +L++ L +FID+CIL GCDYC +
Sbjct: 177 MDSLAFGGKILLRNFFPALMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKL 236
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPED-WPYQEARRLFK-----EPEVVTDE 293
+G+G + L+++H SIE +LEN R +PE+ WPY +AR +F +P V +
Sbjct: 237 KGMGPKKVYDLVQEHRSIEKLLEN---GRVTMPEEGWPYIQAREIFTSQDAGKPPVFS-- 291
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 344
S PD + ++ FLV ENGF++ +V AIE+++ A+NK+ + + S
Sbjct: 292 ------LSPPDVKEILQFLVEENGFDTKKVETAIERLQ-AQNKTKKTVISS 335
>gi|269859663|ref|XP_002649556.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
gi|317374899|sp|B7XHS8.1|FEN1_ENTBH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220067107|gb|EED44575.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
Length = 358
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 223/362 (61%), Gaps = 22/362 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+KL+ + ++ ++ + Y G KIAIDASM IYQFL+ V G + ++
Sbjct: 1 MGIKRLSKLIKTYCSEGVQNRELKYYSGYKIAIDASMCIYQFLVAVRAEGQSLSWGDS-- 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G+F R+IR +E G+ P++VFDG PP+ K E KR +R D L +A+E +
Sbjct: 59 TTSHISGIFYRSIRWIENGIIPVFVFDGIPPEEKIHEFEKRTKRRQDINAKLQDAIEQQD 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + K+ + VK+ K H ++C++ L+L+ +P V APSEAEA CA LCKS V AVA+ED
Sbjct: 119 QVLVSKYDRMNVKMEKSHIEECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MDSL FG+P LR+ S+K+PV E+ + KILE L TM+QF+DLCIL GCDY +IR
Sbjct: 179 MDSLCFGSPLLLRNFNTALSQKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIR 238
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF-----KEPEVVTDEEQ 295
G+G + A + I+++ SI+ ++ ++ P+D+ Y+EAR +F T+E
Sbjct: 239 GVGMKRAFEYIKKYKSIDNLIGIVD-----FPDDFKYKEARTIFFTLGTDTSNNFTNENP 293
Query: 296 LQIK---W-------SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ W ++ + E +I+FL +E GF+ R+ I+K++ K + Q R++SF
Sbjct: 294 INTNIATWDLIAVDSASINIEAVIDFLCNEKGFDKGRIETGIKKLQKQKKVNKQTRIDSF 353
Query: 346 FK 347
FK
Sbjct: 354 FK 355
>gi|403347702|gb|EJY73284.1| FEN-1 nuclease [Oxytricha trifallax]
Length = 392
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 233/393 (59%), Gaps = 34/393 (8%)
Query: 24 ESYFGRKIAIDASM-------------SIYQFLIV----VGRTGTEMLTNEAGEVTSHLQ 66
ES GR +A DAS+ +IYQFLI V G + T++ G T+HL
Sbjct: 2 ESLSGRTLACDASIVRFILIVIVSINQAIYQFLISTTYNVKGVGVKQFTDQQGNQTAHLI 61
Query: 67 GMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 126
G+F R I+ + G+K I+VFDG+PP+LK + L KR R A D+ EA E G++ + K
Sbjct: 62 GLFNRNIQFAQHGIKAIWVFDGKPPELKSRTLEKRKENRDKAEDEKEEAQEDGDEFKMAK 121
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
++RTVKVTK +D KRL+K MG PVV AP EAEA CA L K G+ +A SEDMDSLTF
Sbjct: 122 MAQRTVKVTKSMVEDAKRLVKAMGFPVVHAPGEAEAFCAYLVKEGKAFATVSEDMDSLTF 181
Query: 187 GAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
G+P +R + M I +M+ E++K+L L LT ++F+DLCI+ GCDY +I GIG
Sbjct: 182 GSPFMIRGMSMAKQKAGIELMQIELSKVLFSLKLTYEEFVDLCIICGCDYTATITGIGAV 241
Query: 246 TALKLIRQHGSIETILENINRE---------RYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
A K I ++ +IE +L+ I++E +Y IPED+PYQEAR LF + ++L
Sbjct: 242 KAYKFITEYRTIEKVLKAIDKEIFSSKGKKAKYIIPEDFPYQEARELFLHQDYKEQLQEL 301
Query: 297 --QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK--AAKNKSSQGRLESFFKPVANT 352
Q+KW+ P++E + FL+ E FN ++V ++K+ + +Q RL+SFFK +NT
Sbjct: 302 QDQLKWNKPNDEEIKEFLIKEKNFNEEKVDNGLKKLNKFSPTQGRTQVRLDSFFK--SNT 359
Query: 353 SAPIKRKEPENTPKATTN-KKSKAGGGGGRKRK 384
+ ++T K+ T +KSK G R ++
Sbjct: 360 TTSTSTTPNKDTKKSQTPIQKSKPSNGFKRGKR 392
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 162/382 (42%), Positives = 223/382 (58%), Gaps = 12/382 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGT-EMLTNEAG 59
MGIKGL L++ P S+ E ES G +AIDAS ++YQF I + + L N G
Sbjct: 1 MGIKGLIPFLSEKVPSSISELSLESLSGESLAIDASAALYQFTIAIRDSSYFSSLVNSKG 60
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E TSH+ G+ R + LE G+KP++VFD +PP+LK + L KR +R +A L +A+ G
Sbjct: 61 ESTSHIYGLMNRCSKFLEYGIKPVFVFDSKPPELKTKTLEKRRQQREEANASLKKAISEG 120
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+KE ++K RTVKV+K+ N+ K+LL+LMGVPV+EA EAEAQCA L VASE
Sbjct: 121 DKESVKKLVGRTVKVSKEMNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASE 180
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+L FG LR++ SS+KI ++ ++ K+L+ L DQFID CIL GCDYCD++
Sbjct: 181 DTDTLVFGGAFLLRNVASSSSKKI--LKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTL 238
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
G+G +TA L++++ ++E I+ N Y ++EA+ F P+V +E +K
Sbjct: 239 EGVGPKTAYSLVKKYQNLEEIV-NFKGGDYD-----DFKEAKEYFLSPKVNEYDEN-SVK 291
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK-PVANTSAPIKR 358
D EGL FLV EN F+ +RV K IEK+ K K Q L SF P N A
Sbjct: 292 LGTIDPEGLTEFLVQENNFSKERVEKFIEKLLKFKTKKIQTSLLSFLTAPQHNNKAKSSN 351
Query: 359 KEPENTPKATTNKKSKAGGGGG 380
K P PKA K + G G G
Sbjct: 352 KRPRE-PKALDCKPNTYGSGKG 372
>gi|385302733|gb|EIF46850.1| structure-specific endonuclease rad27 [Dekkera bruxellensis
AWRI1499]
Length = 305
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 198/283 (69%), Gaps = 4/283 (1%)
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP +K EL KR +R DA + +A EAG ++++KF +RTV+VT++
Sbjct: 5 GIKPCYVFDGKPPVMKGGELEKRLKRRQDAEEKAXKAXEAGEAQELQKFQRRTVRVTREQ 64
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
N++ K LL+LMG+P VEAP EAE+QCA L K+G VY ASEDMD+L + LR++
Sbjct: 65 NEEAKHLLRLMGIPYVEAPCEAESQCAELAKAGNVYGAASEDMDTLCYQPTVLLRNVTAA 124
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
SRK+ + ++++ ++L+ ++T+++F+D+CIL GCDYC++IRG+G TA KLIR++ S+E
Sbjct: 125 ESRKLKIDQYDIKEVLKGFDMTIEEFVDMCILLGCDYCETIRGVGPVTATKLIRKYKSLE 184
Query: 259 TILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
I++ I ++ ++++P++WPY+EAR LF PEV E + +KW PD EGL+ F+V E
Sbjct: 185 KIVDAIKQDPKSKFKVPDNWPYKEARELFLHPEVKPGSE-INLKWEEPDVEGLVQFMVKE 243
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 358
NGF+ R+ K+K A +QGRL+ FFK + S+ KR
Sbjct: 244 NGFSEQRIRDGAAKLKKALKGGTQGRLDGFFKVSGSVSSGKKR 286
>gi|156082429|ref|XP_001608699.1| XPG N-terminal domain and XPG I-region domain containing protein
[Babesia bovis T2Bo]
gi|317374876|sp|A7AX58.1|FEN1_BABBO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154795948|gb|EDO05131.1| XPG N-terminal domain and XPG I-region domain containing protein
[Babesia bovis]
Length = 672
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 168/385 (43%), Positives = 237/385 (61%), Gaps = 22/385 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM--LTNEA 58
MGIKGL L+D AP + E ES G IAIDAS ++YQF I + R G+ + LTN
Sbjct: 1 MGIKGLIGFLSDAAPGCISEVTLESLSGTSIAIDASTALYQFTIAI-REGSYLSSLTNSK 59
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
GE TSH+ G+ R IRLLE G++P++VFD PP+ K Q LAKR R +A L +A+E
Sbjct: 60 GESTSHIAGLLNRCIRLLELGIRPVFVFDSTPPEAKSQTLAKRKLLREEAESSLEKAIEE 119
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
+KE I K+ RTV++T++ N+ K+LL+L+GVPV+EA EAEAQCA LC+ G V AV S
Sbjct: 120 DDKEAIRKYVGRTVRITQKENESAKKLLRLVGVPVIEAAEEAEAQCAYLCQRGFVTAVGS 179
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
ED D+L F L++L ++ PV+ ++AK LE L LT +QF D CIL GCDYC +
Sbjct: 180 EDADALVFRCGVLLKNL---TASNKPVVRVDLAKALELLELTHEQFTDFCILCGCDYCGT 236
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
++G+G +TA LI++HGSI ILE + E + Y+ A+ F++P+V + I
Sbjct: 237 LKGVGPKTAYNLIKKHGSISRILE-VRSETLE-----GYEAAQEYFRDPKV---RDITTI 287
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF--KPVA-----N 351
+ +GL FL+SEN F+ +RV K IE+++ A++K +Q L+SFF P A N
Sbjct: 288 DRCEANIDGLREFLISENDFSEERVDKLIERLQKARSKKTQLSLKSFFGYPPRAANITRN 347
Query: 352 TSAPIKRKEPENTPKATTNKKSKAG 376
+ PIK P ++ + S G
Sbjct: 348 YTVPIKGVSPPAVVESAVDSTSDDG 372
>gi|449685242|ref|XP_002159259.2| PREDICTED: flap endonuclease 1-like, partial [Hydra magnipapillata]
Length = 230
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 173/227 (76%), Gaps = 2/227 (0%)
Query: 98 LAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 157
LAKR +R +A L +A E G++E+I+KFS+R VKVT QHN +CK LL LMGVP ++AP
Sbjct: 1 LAKRTERREEAQKLLDQATEQGDQENIDKFSRRLVKVTPQHNKECKELLDLMGVPYIDAP 60
Query: 158 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 217
EAEAQCA L K G+VYA+ SEDMDSLTFGA LRHL +RK+P+ EF +K+LEEL
Sbjct: 61 CEAEAQCAELVKGGKVYAMGSEDMDSLTFGANILLRHLTFSEARKMPIQEFHYSKVLEEL 120
Query: 218 NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI-NRERYQIPEDWP 276
LT +QF+DLCIL GCDYC SI+G+G TA+KLI++H +IE I++++ ++++Y IPE+W
Sbjct: 121 ELTKEQFVDLCILLGCDYCASIKGVGPVTAMKLIKEHRNIEGIIKHLQSKDKYTIPENWM 180
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
Y+++R LF EPE VT +Q+Q+KW PDEEGL+ ++V + GF D +
Sbjct: 181 YEDSRLLFLEPE-VTPADQVQLKWKEPDEEGLVEYMVKQKGFRFDII 226
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 173/375 (46%), Positives = 225/375 (60%), Gaps = 21/375 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTG-TEMLTNEAG 59
MGIKGL L++ AP S+KE ES G IAIDAS ++YQF I + T L N G
Sbjct: 1 MGIKGLIGFLSETAPSSIKEVPLESLSGETIAIDASAALYQFAIAIRDTSYLSTLVNSKG 60
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E TSH+ G+ R +R+LEAG+KPI+VFD PPDLK L+KR +R +A L A EAG
Sbjct: 61 ESTSHISGLMNRCVRILEAGIKPIFVFDSTPPDLKLDTLSKRKERREEAEASLEAAKEAG 120
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E I+K RTVKV+K+ N+ K+LL+LMG+PVVEA EAEAQCA L + G AVASE
Sbjct: 121 DSETIKKLVGRTVKVSKEQNNSAKQLLRLMGIPVVEAKEEAEAQCAQLVQEGIATAVASE 180
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D DSL FG LR+L S +K V+ + K+L L T QF D CIL GCDYC +I
Sbjct: 181 DSDSLVFGCRILLRNL---SGKK--VLRIDQEKVLSLLGFTRAQFTDFCILCGCDYCGTI 235
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRLFKEPEVVTDEEQLQI 298
+GIG + A LI+++ SIE IL+ E P ++EARR F P+V E
Sbjct: 236 KGIGPKNAYSLIKKYKSIEEILKFKG-------ETLPGFEEARRYFLAPQVF---EGANP 285
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 358
+ + P+ E L FL+ EN FNS+RV K I K+ A+ Q L FF +T+A K+
Sbjct: 286 ETTFPNLEELRKFLI-ENDFNSERVDKFILKLTKARKVKVQLSLGRFFG--KDTAALQKK 342
Query: 359 KEPENT-PKATTNKK 372
E+T P +T +K
Sbjct: 343 TVKEDTKPVISTEEK 357
>gi|299743075|ref|XP_001835524.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
gi|298405488|gb|EAU86309.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
Length = 422
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 174/228 (76%)
Query: 37 MSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
MSIYQFLI V + EMLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LKK
Sbjct: 1 MSIYQFLIAVRQRDGEMLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKG 60
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEA 156
L+KR+ KR +A ++ EA E G ED+++FS+RTVKVTKQHN++C++LL+LMGVP V A
Sbjct: 61 VLSKRFEKREEAKEEGEEAKEIGTAEDVDRFSRRTVKVTKQHNEECQKLLRLMGVPCVIA 120
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE 216
PSEAEAQCA L + G+VYA SEDMD+LTF AP RHL ++K P+ E + L+
Sbjct: 121 PSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALKG 180
Query: 217 LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
L++ M QF+DLCIL GCDY + I+G+G ++ALKLIR+ G ++ ++E++
Sbjct: 181 LDMDMSQFVDLCILLGCDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 228
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIP++WP++EA+++F +P+V+ +Q++++W PD EGL+ FLV+E GF+ +RV K EK
Sbjct: 307 QIPDEWPWEEAKQIFLKPDVIP-ADQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEK 365
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
+ N QGRL+ FF + P K K T K G G+K K
Sbjct: 366 LTKFLNAKQQGRLDGFFTVKPKQAPPPAAKGKGAASKGTKRKGEDKAEGSGKKAK 420
>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
gi|166973706|sp|A1RSC7.1|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
Length = 346
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 217/355 (61%), Gaps = 18/355 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ + +E K E+ G+ IA+DA S+YQFL + + L + G
Sbjct: 1 MGVTELGKLIGKDI---RREVKLENLAGKCIALDAYNSLYQFLASIRQPDGTPLMDRVGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI L+EAG+KP+YVFDG+PP+ K E+ +R + A +++ +A++ G
Sbjct: 58 ITSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KED+ K+ KR V +T +D K+LL MGVP V+APSE EAQ A + K G +AV S+D
Sbjct: 118 KEDVAKYMKRAVFLTSDMVEDAKKLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFIDLCILSG 232
DSL FG+PR +R+L RKI V+E E+ +L+ L L +Q IDL IL G
Sbjct: 178 YDSLLFGSPRLVRNLAVSPRRKIGEEVIELSPEIIELDAVLKSLRLKNREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
DY D + G+G Q ALKL+ + G +E +LE + R Y P D P E ++ F P VT
Sbjct: 238 TDYNPDGVPGVGPQKALKLVWEFGGLEKMLETVLRGVY-FPVD-PL-EIKKFFLNPP-VT 293
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
DE IK PDE+ LI+FLV E+ F+ DRV KA+E++K A+ K L+SFF
Sbjct: 294 DEYSTDIK--KPDEQKLIDFLVREHDFSEDRVLKAVERLKRAQTKYKISSLDSFF 346
>gi|430812753|emb|CCJ29874.1| unnamed protein product [Pneumocystis jirovecii]
Length = 225
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 166/224 (74%), Gaps = 1/224 (0%)
Query: 124 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 183
+ KFS+RTV++T++HN++CK+LLKLMG+P V+AP EAEAQCAAL K+G+VYA ASEDMD
Sbjct: 1 MNKFSRRTVRMTREHNEECKKLLKLMGIPYVDAPCEAEAQCAALAKAGKVYAAASEDMDI 60
Query: 184 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIG 243
L F P LRHL +K P+ E + K L+ELN+ ++QF+DLCIL GCDYC+ I+GIG
Sbjct: 61 LCFSTPILLRHLTFSEQKKEPITEVNLEKALKELNMPLEQFVDLCILLGCDYCEPIKGIG 120
Query: 244 GQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAP 303
+ AL+LIR++ S++ + ++ +Y IPE+WPY++AR LF +P+ +TD E ++KW +P
Sbjct: 121 PKRALELIREYKSLDAFINFADKSKYHIPENWPYKDARELFLKPD-ITDPETFELKWESP 179
Query: 304 DEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
D EGL++FLV E GF+ +RV I +++ + Q RL+ +FK
Sbjct: 180 DAEGLLDFLVKEKGFSEERVNNGIVRLEKTLKSAQQIRLDGYFK 223
>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
gi|28380018|sp|Q8ZYN2.1|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
Length = 346
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 149/355 (41%), Positives = 218/355 (61%), Gaps = 18/355 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ +E K ES G+ IA+DA ++YQFL + + L + AG
Sbjct: 1 MGVTELGKLIGKEV---RREVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI LLEAG++P+YVFDG+PP+ K E+ +R R A +++ A++ G
Sbjct: 58 ITSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ED+ K++KR V +T + D+ KRLL MGVP V+APSE EAQ A + + G +AV S+D
Sbjct: 118 REDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFIDLCILSG 232
DSL FG+P+ +R+L RKI V+E E+ +L L L +Q IDL IL G
Sbjct: 178 YDSLLFGSPKLVRNLAVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
DY D + G+G Q ALKLI + GS+E +LE + + Y P D P E ++ F P VT
Sbjct: 238 TDYNPDGVPGVGPQKALKLIWEFGSLEKLLETVLKGAY-FPID-PL-EIKKFFLNPP-VT 293
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
D+ +++ PDE L +FL+ E+ F+ +RV+KA+E+++ A+ K L+SFF
Sbjct: 294 DQYATEVR--DPDEAALKDFLIREHDFSEERVSKALERLRKARGKLKTSSLDSFF 346
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 206/348 (59%), Gaps = 10/348 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI LT+LL + APK+++ + E Y G K+AIDASM +YQ L+ + R G + L N+ GE
Sbjct: 1 MGICKLTELLKEKAPKAIRSTQIEKYRGWKVAIDASMILYQSLVAI-RYGMDSLKNKNGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T+HL G+F +TI L+E G+ P+Y+FDG P+LK+ L +R +++ A DL +A
Sbjct: 60 TTAHLYGIFYKTINLIEKGIVPVYIFDGLAPELKENILVERRARKEQAERDLEQAETESE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K K +KRTV+ TK H + + LL MGVP + AP+EAE CAAL + V V SED
Sbjct: 120 KM---KHAKRTVRATKYHVESAQALLSAMGVPYMTAPNEAEGFCAALNIANAVNGVVSED 176
Query: 181 MDSLTFGAPRFLRHLMDP-SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
MDSL FG LR+ +K+ VME + ++L++ L +FID+CIL GCDYC
Sbjct: 177 MDSLAFGGKVLLRNFFPALMKKKMAVMEISLDEVLKQTGLDQAEFIDMCILLGCDYCQKP 236
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+G+G + L+++H SIE I+E+ + + EDWPY EAR +F E +
Sbjct: 237 KGLGPKKVYDLVQEHRSIEKIVESGKIQPGE--EDWPYVEAREIFTSQEA---GKPPVFS 291
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ P + ++ FLV ENGF+ +V A+ +++A Q L F K
Sbjct: 292 MALPKADEIVQFLVEENGFDRKKVDTAVARLQAHSKAKKQSSLLVFAK 339
>gi|256064183|ref|XP_002570412.1| flap endonuclease-1 [Schistosoma mansoni]
Length = 241
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 163/236 (69%), Gaps = 8/236 (3%)
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF 208
MGVP V AP EAEAQCA L KSG+VYAV +EDMD+L FG P LRHL +RK+ + EF
Sbjct: 1 MGVPFVNAPGEAEAQCAVLAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEF 60
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
+ +LE L LTMDQFIDLCIL GCDY D+IRGIG + AL L+ ++ SI+ +L+NI++ +
Sbjct: 61 NLTSVLEGLGLTMDQFIDLCILLGCDYVDTIRGIGPKKALDLLHKYQSIDCVLKNIDKSK 120
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y +P+DWPY++A++LF PE VTD +++KW+ PDEEGL+ FL ++GFN +R+ +
Sbjct: 121 YIVPDDWPYEDAKKLFLNPE-VTDPSSIELKWNEPDEEGLVEFLCHKHGFNEERIRNGAK 179
Query: 329 KIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
K+ AKN ++QGR+++FF T P K +TP +N K + RKRK
Sbjct: 180 KLLKAKNTTTQGRIDNFF-----TCVPSKSDSSMSTP--NSNNKKVSNSASDRKRK 228
>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
Length = 346
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 210/357 (58%), Gaps = 22/357 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ +A +E K E GR +A+DA ++YQFL + + L + G
Sbjct: 1 MGVTELGKLIPQDA---RREVKLEQLSGRSVALDAYNALYQFLASIRQPDGTPLMDSRGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTI L+EAG++P+YVFDG+PP+LK+ E+ R + + A + + A G
Sbjct: 58 VTSHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRAEIESRRAAKEKAREQMERAAAEGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
ED+ K++KR + VT Q +D K LL MG+P V+APSE EAQ A + G V+ S+D
Sbjct: 118 AEDVAKYAKRVIYVTDQMAEDAKALLTAMGIPWVQAPSEGEAQAAYMAARGSVWGAGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRK-------IPVMEFEVAKILEELNL-TMDQFIDLCILSG 232
DSL FGAPR +R+L S RK +P E+ K+L+ L L + +Q +D+ IL G
Sbjct: 178 YDSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELDKVLKALKLKSREQLVDIAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARRLFKEPEV 289
DY D + G+G Q ALK+I + GS+E L+ + + WP E +++F P
Sbjct: 238 TDYNPDGVPGVGPQKALKIILEQGSLENALKTVLKG-----VKWPVDPLEIKKIFLNPPA 292
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+Q ++++ PDE ++ LV E+ F+ DRV K +E+++ A +K+ L+SFF
Sbjct: 293 T---DQYRVEFREPDEAKVLEILVEEHDFSRDRVEKGLERLRRALSKAKTSSLDSFF 346
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 199/338 (58%), Gaps = 21/338 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + ES +GRK+AIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELESLYGRKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP+ KK+EL KR R +A EA+ G+ E+ K+++R +V +
Sbjct: 72 GIKPAYVFDGKPPEFKKRELEKRKEAREEAEIKWKEALAKGDIEEARKYAQRATRVNEML 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+PV++APSE EAQ A + G+VYA AS+D DSL FGAPR +R+L
Sbjct: 132 IEDAKKLLELMGIPVIQAPSEGEAQAAYMASKGKVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEVA---------KILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P V ++L L LT ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GKRKLPGKNIYVEIKPELIVLDEVLSSLKLTREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+++R ++Q D + F P VTD+ +LQ W PDEEG+
Sbjct: 252 EIVRHSKD--------PLAKFQRQSDVDLYAIKEFFLNPP-VTDDYKLQ--WREPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ FL E+ F+ +RV +E++K A Q LES+F
Sbjct: 301 LRFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLESWF 338
>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Pyrobaculum neutrophilum V24Sta]
gi|226700955|sp|B1YC46.1|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170935639|gb|ACB40900.1| XPG I domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 349
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 215/355 (60%), Gaps = 18/355 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ A +E K E+ GR IA+DA ++YQFL + + L + G
Sbjct: 1 MGVTELGKLIGREA---RREIKLENLAGRCIALDAYNALYQFLASIRQPDGTPLMDRQGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTI L+EAG+KP+YVFDG+PP+ K E+ R + A +++ +A+ G
Sbjct: 58 VTSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVVKAIREGK 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++D+ K+ KR + +T + +D KRLL MGVP V+APSE EAQ A + K G +AV S+D
Sbjct: 118 RDDVAKYMKRVIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHL-MDPSSRK------IPVMEFEVAKILEELNLT-MDQFIDLCILSG 232
DSL FG+PR +R+L + P R + E+ +L+ L L +Q ID+ IL G
Sbjct: 178 YDSLLFGSPRLVRNLAVSPKRRSGEEVVEVSPEVVELDSVLKALKLKGREQLIDVAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
DY D + G+G Q ALKL+ + GS+E +L+ + R P D P E +R F P VT
Sbjct: 238 TDYNPDGVPGVGPQKALKLVLEFGSLEKMLDTVLRG-VSFPVD-PL-EIKRFFLNPP-VT 293
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+E L++K DE GL+NFLV E+ F+ +RV KA+E++K A+ + L+SFF
Sbjct: 294 EEYALELK--NVDERGLVNFLVGEHDFSEERVAKAVERLKKARARQKTSSLDSFF 346
>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
gi|166973705|sp|A3MY15.1|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
Length = 346
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 212/355 (59%), Gaps = 18/355 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ A +E K ES G+ +A+DA ++YQFL + + L + AG
Sbjct: 1 MGVTELGKLIGKEA---RREIKLESLAGKCVALDAYNALYQFLASIRQPDGTPLMDRAGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI LLEAG+KP+YVFDG+PP+ K E+ +R + A +++ +A+ G
Sbjct: 58 ITSHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVEKAIREGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ED+ K++KR + +T + +D K+LL MG+P V+APSE EAQ A + K G +AV S+D
Sbjct: 118 REDVAKYAKRAIFLTSEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM--------DQFIDLCILSG 232
DSL FG+PR +R+L RK+ E++ L EL+ + +Q IDL IL G
Sbjct: 178 YDSLLFGSPRLVRNLAVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
DY + + G+G Q ALKLI + GS+E +L+ + + Q P D P + R F P V
Sbjct: 238 TDYNPEGVPGVGPQKALKLIWEFGSLEKLLQTVLK-GVQFPVD-PLK-IREFFLNPPVT- 293
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+Q + S PDE ++ LV E+ F+ +RV KA+E++ A+ K L++FF
Sbjct: 294 --DQYSTELSTPDERKIVELLVEEHDFSQERVAKALERLAKARGKVKTTSLDAFF 346
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 200/347 (57%), Gaps = 23/347 (6%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
+ D P+ KE E+ +G+KIAIDA +IYQFL + + L + G +TSHL G+F
Sbjct: 5 IGDLVPR--KEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
RTI L+EAG+KP YVFDG+PP+ K++EL KR R +A EA+ GN E+ K+++
Sbjct: 63 YRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQ 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
R KV + +D K+LL+LMG+P+++APSE EAQ A + G VYA AS+D DSL FGAP
Sbjct: 123 RATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAP 182
Query: 190 RFLRHLMDPSSRKIPVMEFEVA---------KILEELNLTMDQFIDLCILSGCDYC-DSI 239
R +R+L RK+P + V ++L+EL +T ++ I+L IL G DY +
Sbjct: 183 RLIRNLTITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGV 242
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+GIG + AL+++R ++Q D + F P V + +
Sbjct: 243 KGIGPKKALEIVRYSRD--------PLAKFQRQSDVDLYAIKEFFLNPPVTN---EYSLS 291
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
W PDEEG++ FL E+ F+ +RV IE++K A Q LES+F
Sbjct: 292 WKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWF 338
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 200/347 (57%), Gaps = 23/347 (6%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
+ D P+ KE E+ +G+KIAIDA +IYQFL + + L + G +TSHL G+F
Sbjct: 5 IGDLVPR--KEIDLENLYGKKIAIDALNAIYQFLSTIRQEDGTPLMDSKGRITSHLSGLF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
RTI L+EAG+KP YVFDG+PP+ K++EL KR R +A EA+ GN E+ K+++
Sbjct: 63 YRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQ 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
R KV + +D K+LL+LMG+P+++APSE EAQ A + G VYA AS+D DSL FGAP
Sbjct: 123 RATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAP 182
Query: 190 RFLRHLMDPSSRKIPVMEFEVA---------KILEELNLTMDQFIDLCILSGCDYC-DSI 239
R +R+L RK+P + V ++L+EL +T ++ I+L IL G DY +
Sbjct: 183 RLIRNLTITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGV 242
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+GIG + AL+++R ++Q D + F P V + +
Sbjct: 243 KGIGPKKALEIVRYSRD--------PLAKFQRQSDVDLYAIKEFFLNPPVTN---EYSLS 291
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
W PDEEG++ FL E+ F+ +RV IE++K A Q LES+F
Sbjct: 292 WKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWF 338
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/339 (41%), Positives = 201/339 (59%), Gaps = 23/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ +G+KIAIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRMTSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP+YVFDG+PP+ KK+EL KR R +A EA+ G+ E+ K+++R KV +
Sbjct: 72 GIKPVYVFDGKPPEFKKKELEKRREAREEAEVKWREALARGDIEEARKYAQRATKVNEML 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+P+V+APSE EAQ A + G VYA AS+D DSL FGAPR +R+L
Sbjct: 132 IEDAKQLLQLMGIPIVQAPSEGEAQAAYMAMKGDVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P + V +L +L +T ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GKRKMPGKDVYVEVKPELIILEDVLNQLKITREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIR-QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
++++ + + + + YQI E F P VTDE L W PDEEG
Sbjct: 252 EIVKYSKDPLAKFQKQSDVDLYQIKE---------FFLNPP-VTDEYSLT--WKEPDEEG 299
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+I FL E+ F+ +RV IE++K A Q LES+F
Sbjct: 300 IIRFLCDEHDFSEERVKNGIERLKKAIKAGKQSTLESWF 338
>gi|379005480|ref|YP_005261152.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
gi|375160933|gb|AFA40545.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
Length = 346
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 212/355 (59%), Gaps = 18/355 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ A +E K E+ GR +A+DA ++YQFL + + L + AG
Sbjct: 1 MGVTELGKLIGKEA---RREAKLEALAGRCVALDAYNALYQFLASIRQPDGTPLMDRAGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSH+ G+F RTI L+EAG+KP+YVFDG+PP+ K E+ +R + AT++L A++ G
Sbjct: 58 ITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRRAKEKATEELVRAIKEGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++ K++KR + +T + +D KRLL MGVP V+APSE EAQ A + + G +AV S+D
Sbjct: 118 RDEVAKYAKRAIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFIDLCILSG 232
DSL FG+PR +R+L RK+ V+E E+ +L+ L L + +Q IDL IL G
Sbjct: 178 YDSLLFGSPRLVRNLAASPKRKVGDEVVELSPEIIELDTVLKSLRLRSREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
DY D + GIG Q ALKLI + GS+E +L+ + R P D P E +R F P V
Sbjct: 238 TDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTVLRG-VTFPID-PV-EIKRFFLNPPVTD 294
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
K PD+ L FLV E+ F +RV +A+E++K A K L+SFF
Sbjct: 295 TYTTDVTK---PDDAKLREFLVHEHDFGEERVERALERLKKAMGKLRTSALDSFF 346
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 196/338 (57%), Gaps = 21/338 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ +G+KIAIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP+YVFDG+PP KK+EL KR R +A EA+ G+ E+ K+++R KV +
Sbjct: 72 GIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEML 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+P+V+APSE EAQ A + G VYA AS+D DSL FG PR +R+L
Sbjct: 132 IEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P + V ++L+EL +T ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ ++Q D + F P D +KW PDEEG+
Sbjct: 252 EIVKYSKD--------PLAKFQRQSDVDLYAIKEFFLNPPTTDD---YSLKWKEPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I FL E+ F+ +RV +E++K A Q LES+F
Sbjct: 301 IRFLCDEHDFSEERVKNGLERLKKAIKAGKQSTLESWF 338
>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
gi|166973704|sp|A4WNC4.1|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
Length = 346
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 213/355 (60%), Gaps = 18/355 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ A +E K E+ GR +A+DA ++YQFL + + L + AG
Sbjct: 1 MGVTELGKLIGKEA---RREVKLEALAGRCVALDAYNALYQFLASIRQPDGTPLMDRAGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSH+ G+F RTI L+EAG+KP+YVFDG+PP+ K E+ +R + AT++L A++ G
Sbjct: 58 ITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKATEELVRAIKEGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++++ K++KR + +T + +D K+LL MGVP V+APSE EAQ A + + G +AV S+D
Sbjct: 118 RDEVAKYAKRAIFLTNEMVEDAKKLLTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFIDLCILSG 232
DSL FG+PR +R+L RK+ V+E E+ +L+ L L + +Q IDL IL G
Sbjct: 178 YDSLLFGSPRLVRNLATSPKRKVGDEVVELSPEIIELDAVLKSLRLRSREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
DY D + GIG Q ALKLI + GS+E +L+ + R P D P E +R F P V
Sbjct: 238 TDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTVLRG-VTFPID-PV-EIKRFFLNPPVTD 294
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
K PD+ L +FLV E+ F +RV +A+E++K A K L+SFF
Sbjct: 295 TYTTDVTK---PDDAKLRDFLVHEHDFGEERVERALERLKKAMGKLRTSALDSFF 346
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 206/357 (57%), Gaps = 22/357 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ A KE K E GR IA+DA ++YQFL + + L + G
Sbjct: 1 MGVTELGKLIPKEA---RKELKLEQLSGRVIALDAYNALYQFLASIRQPDGTPLMDSRGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTI L+EAG++P+YVFDG+PP+LK++E+ R + + A + +A+A G
Sbjct: 58 VTSHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRREIEARRAAKEKAREQMAKAAAEGK 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E++ K++KR V +T +D K LL MG+P V+APSE EAQ A + G + S+D
Sbjct: 118 TEEVAKYAKRVVYITDSMAEDAKALLTAMGIPWVQAPSEGEAQAAHMAAKGSAWGAGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRK-------IPVMEFEVAKILEELNL-TMDQFIDLCILSG 232
DSL FGAPR +R+L S RK +P E+ L L L + +Q IDL IL G
Sbjct: 178 YDSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELESALRALKLKSREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARRLFKEPEV 289
DY D + G+G Q ALK+I++HGS+E L + + +WP E +R+F P
Sbjct: 238 TDYNPDGVPGVGPQRALKIIQEHGSLENALRTVLKA-----VEWPVDPLEIKRMFLSPPA 292
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ ++++ PD + LV E+ F+ +RV K +E+++ A ++S L++FF
Sbjct: 293 T---DNYRVEFREPDVAEVYRILVEEHDFSRERVEKGLERLRKALSRSRTSSLDAFF 346
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 202/339 (59%), Gaps = 23/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ +GRK+AIDA +IYQFL + + L + G +TSHL G+F R I L+EA
Sbjct: 12 KEIELENLYGRKVAIDAFNAIYQFLSTIRQRDGTPLMDSRGRITSHLSGLFYRNINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP+ KK+E+ KR R +A + EA+E GN E+ +K++ R +V +
Sbjct: 72 GIKPAYVFDGKPPEFKKKEIEKRREAREEAKEKWYEALERGNLEEAKKYAMRATRVNEGL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D KRLL+LMG+PV++APSE EAQ A + +VYA AS+D DSL FGAPR +R++
Sbjct: 132 INDAKRLLELMGIPVIQAPSEGEAQAAYMAARKKVYASASQDYDSLLFGAPRLVRNVTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P V ++L+EL + ++ I++ IL G DY I+GIG + AL
Sbjct: 192 GRRKLPGKNVYVEVRPELIVLEEVLKELGIDREKLIEMAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLI-RQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
++ R ++ ++ + Y I E F P VTDE +L KW PDEEG
Sbjct: 252 TIVKRTKDPLKKYNKDSEVDLYAIKE---------FFLNPP-VTDEYEL--KWREPDEEG 299
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++ FL E+ F+ +RV +E++K A Q LES+F
Sbjct: 300 ILKFLCDEHDFSEERVKNGLERLKKAVKAGKQATLESWF 338
>gi|300707184|ref|XP_002995811.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
gi|239605030|gb|EEQ82140.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
Length = 265
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 177/261 (67%), Gaps = 2/261 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+ +L ++ K +KE++ S+ +K+AID S IYQFLI V R+G L
Sbjct: 1 MGIKQLSVILKEHCKKGVKEKQVGSFAFKKVAIDISNFIYQFLIAV-RSGGNAL-GYGDT 58
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E+G+ PI+VFDG+PP+LK EL KR +R A + L A+EA +
Sbjct: 59 TTSHLVGMFYRTIRIVESGVTPIFVFDGKPPELKLYELKKRSDRRDKAEEQLKLAMEAED 118
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K +IEK +KR +KV+++H +DCKRLLKLMG+P + APSEAEA CA LCK V AVA+ED
Sbjct: 119 KAEIEKQTKRKIKVSEEHVNDCKRLLKLMGIPYLTAPSEAEAFCAYLCKVKCVDAVATED 178
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FGAP LR + +K V E+ + L EL++ + +FIDLCIL GCDY +S +
Sbjct: 179 MDALPFGAPVLLRGFSSAAVKKTHVTEYNLQTCLGELDMNLPEFIDLCILLGCDYTESGK 238
Query: 241 GIGGQTALKLIRQHGSIETIL 261
GIG + + LI+ ++ L
Sbjct: 239 GIGPKKGVSLIKNTNVLKRYL 259
>gi|374327648|ref|YP_005085848.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
gi|356642917|gb|AET33596.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
Length = 346
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 215/357 (60%), Gaps = 22/357 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ + +K E+ GR +++DA ++YQFL + + L + G
Sbjct: 1 MGVVELGKLIGREIRRDVK---LENLAGRCVSLDAYNALYQFLASIRQPDGTPLMDREGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI LLE+G+KP+YVFDG+PP+ K E+ R R A +++ +A++ G
Sbjct: 58 ITSHLSGLFYRTINLLESGIKPVYVFDGKPPEFKLAEIESRRKTREKAMEEVVKALKEGR 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KED+ K++KR V +T + ++ ++LL MGVP V+APSE EAQ A + G +AV S+D
Sbjct: 118 KEDVIKYAKRAVFITSEMVEESRKLLSYMGVPWVQAPSEGEAQAAYMVVKGHCWAVGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM--------DQFIDLCILSG 232
D+L FG+PR +R+L R++ E+A + EL+ + +Q IDL IL G
Sbjct: 178 YDALLFGSPRLVRNLAVSPKRRVGEEVVELAPEIIELDAVLKALRLKNREQLIDLAILLG 237
Query: 233 CDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARRLFKEPEV 289
DY D + G+G Q ALKLI + GS+E +L+ + + + +P E +R F +P
Sbjct: 238 TDYNPDGVPGMGPQKALKLIWEFGSLEKMLDTVLKGVH-----FPVNPLEIKRFFLQPP- 291
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
VTDE ++K PDEE L +FLV E+ F+ +RV KA+E+++ A+ K L+SFF
Sbjct: 292 VTDEYTTEVK--TPDEERLRDFLVREHDFSEERVEKALERLRKARGKLRTSSLDSFF 346
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 202/329 (61%), Gaps = 20/329 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ I++DA ++YQFL ++ + L + AG VTSHL G+ RT L G+KP+YVFD
Sbjct: 21 GKIISVDAYNALYQFLSIIRQPDGTPLRDHAGRVTSHLSGLLYRTANFLAEGIKPVYVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK + + +R R +A + +A++ GN E+ +++ +TK D+ K+LL
Sbjct: 81 GRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLEEARSKAQQATFLTKDMVDEAKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P V+APSE EAQ A + K G YA AS+D DSL FGAP +R+L RK+P
Sbjct: 141 YMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFDSLLFGAPNLVRNLAITGKRKLPRKN 200
Query: 208 FEV-----AKILEE----LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
V +LEE L ++ +Q +D+ IL G DY + I+G+G +TALKLI+++GS+E
Sbjct: 201 VYVDVKPEIILLEENLKNLGISREQLVDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLE 260
Query: 259 TILENINRER-YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
I++ ER Y IP Y+E + +F P VTD +L+ W A DEE LI+FL E+
Sbjct: 261 KIIQ----ERGYTIPH---YKEIKDIFLNPP-VTDSYKLE--WRAFDEEKLIDFLCEEHD 310
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ DRV AIEK++A K Q L+S+F
Sbjct: 311 FSRDRVMSAIEKMRAFKKYREQRSLDSWF 339
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 201/338 (59%), Gaps = 21/338 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E +GRK+AIDA ++YQFL + + L + G +TSHL G F RTI L+EA
Sbjct: 12 KEIELEGLYGRKVAIDAFNAMYQFLSTIRQRDGTPLMDSRGRITSHLSGFFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP+ K++E+ KR R A + EA+E G+ E+ +K++ R +V +
Sbjct: 72 GIKPAYVFDGKPPEFKRKEIEKRREAREKAEERWHEALERGDLEEAKKYAMRATRVNEGL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+PV++APSE EAQ A + +VYA AS+D DSL FGAPR +R+L
Sbjct: 132 INDAKKLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIP----VMEFE-----VAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P +E + + ++L+EL + ++ I++ IL G DY I+GIG + AL
Sbjct: 192 GRRKLPGKNAYVEVKPELVVLEEVLKELGVDREKLIEMAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ +YQ D + F P VTDE +L KW PDEEG+
Sbjct: 252 TIVKRTKD--------PLRKYQKDSDVDLYAIKEFFLNPP-VTDEYEL--KWREPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I FL E+ F+ +RV IE++K A Q LES+F
Sbjct: 301 IRFLCDEHDFSEERVKNGIERLKKAVKAGKQATLESWF 338
>gi|440491836|gb|ELQ74443.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 335
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 200/347 (57%), Gaps = 16/347 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI LTK++ + E Y +K+A DAS+ YQ+L+ + G ++ N +
Sbjct: 1 MGIHNLTKVIKKYYRPA--EHPLSFYRTKKMAFDASLLTYQYLVAIRSDGAQLAHNSSS- 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F + I L E G+KP++VFDG+PP +K +E+A+R +R DA + +EA E +
Sbjct: 58 -TSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKDAAEKYSEAEEQMD 116
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K +EK+ KR +K+ K+H DD K LL MGV + +EAEA CAALC+ G V V +ED
Sbjct: 117 KVKMEKYDKRKLKIGKEHTDDIKSLLDAMGVAYTISENEAEAFCAALCRKGIVDYVCTED 176
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP L++ + S V E+ + +IL ++ L D+F+DLCIL GCDY +I+
Sbjct: 177 MDALCFRAPVLLKNFVKDS-----VAEYRLDEILRDMKLEFDEFVDLCILLGCDYAGTIK 231
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG A LIR+H SIE I++ + Q+ D+ Y++AR F + + + I W
Sbjct: 232 GIGPMKAETLIRKHRSIENIVKEL-----QVT-DYEYEKARETFLNMKNNVEVGFVGIDW 285
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
D + FL E F+ R+ +++ + +NK Q RL FK
Sbjct: 286 QKYDRNKVFEFL-KEKNFDERRINNGLDRYEKCRNKKEQSRLSDMFK 331
>gi|207343574|gb|EDZ71001.1| YKL113Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 261
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 161/232 (69%), Gaps = 6/232 (2%)
Query: 126 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
K +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L
Sbjct: 2 KQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLC 61
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
+ P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIRG+G
Sbjct: 62 YRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPV 121
Query: 246 TALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D ++ +KW
Sbjct: 122 TALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNEINLKW 180
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 352
S P E+ LI +L + F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 181 SPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKT 232
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 201/329 (61%), Gaps = 20/329 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ I++DA ++YQFL ++ + L + AG VTSHL G+ RT L G+KP+YVFD
Sbjct: 21 GKIISVDAYNALYQFLSIIRQPDGTPLRDHAGRVTSHLSGLLYRTANFLAEGIKPVYVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK + + +R R +A + +A++ GN E+ +++ +TK D+ K+LL
Sbjct: 81 GRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLEEARSKAQQATFLTKNMVDEAKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P V+APSE EAQ A + K G YA AS+D DSL FGAP +R+L RK+P
Sbjct: 141 YMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFDSLLFGAPNLVRNLAITGKRKLPRKN 200
Query: 208 FEV-----AKILEE----LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
V +LEE L ++ +Q +D+ IL G DY + I+G+G +TALKLI+++GS+E
Sbjct: 201 VYVDVKPEIILLEENLKNLGISREQLVDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLE 260
Query: 259 TILENINRER-YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
I++ ER Y IP Y+E + +F P VTD +L+ W A DEE LI FL E+
Sbjct: 261 KIIQ----ERGYTIPH---YKEIKDIFLNPP-VTDSYKLE--WRAFDEEKLIEFLCDEHD 310
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ DRV AIEK++A K Q L+S+F
Sbjct: 311 FSRDRVMSAIEKMRAFKKYREQRSLDSWF 339
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 208/359 (57%), Gaps = 23/359 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L +L+ K+++ +S + +A+DA ++YQFL + L + G
Sbjct: 1 MGVTALRELIPSKCKKTLE---LKSLSNKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTI +LE G+K YVFDG PP LK +E+ +R + +A EAV G+
Sbjct: 58 VTSHLSGLFYRTINMLENGIKVAYVFDGAPPKLKTREIERRQKLKQEAEKKYEEAVRRGD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+ K+++ + K+TK+ ++ KRLL+ MGVP V+APSE EAQ A + G V+A AS+D
Sbjct: 118 VEEARKYAQMSAKLTKEMVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVM---------EFEVAKILEELNLTMDQFIDLCILS 231
DSL FG+PR +R+L RK+P E + +LEEL +T +Q + + +L
Sbjct: 178 YDSLLFGSPRLVRNLAVSGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLI 237
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
G DY ++G+G +TAL+ ++ +G +E +L + + ++ Y EA F P+V
Sbjct: 238 GTDYTPGVKGVGPKTALRYVKSYGDLERVLTALGVDDKEL-----YLEAYNFFLNPQVTD 292
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSS--QGRLESFFK 347
D E + W PD + +I LV E+ FN +RV KAIE++ KA K K S Q L+ FFK
Sbjct: 293 DYE---LVWRRPDPQKIIEILVYEHDFNEERVRKAIERLMKAWKEKLSTKQSTLDMFFK 348
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 200/339 (58%), Gaps = 21/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ +G+KIAIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP+YVFDG+PP+ KK+EL KR R +A + EA+E G E+ K+++R +V +
Sbjct: 72 GIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEML 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+P+V+APSE EAQ A + G VYA AS+D DSL FGAPR +R+L
Sbjct: 132 IEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P V ++L+EL LT ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+++R ++Q D + F P VTD L W PDEEG+
Sbjct: 252 EIVRHSKD--------PLAKFQKQSDVDLYAIKEFFLNPP-VTDNYNLV--WRDPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ FL E+ F+ +RV +E++K A Q LES+FK
Sbjct: 301 LKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 200/339 (58%), Gaps = 21/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ GRK+AIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KELELENLNGRKVAIDAFNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP+ KK+EL KR R +A + EA+ G+ E+ +K+++R KV +
Sbjct: 72 GIKPAYVFDGKPPEFKKKELEKRAEAREEAQEKWEEALARGDLEEAKKYAQRASKVNEML 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+P V+APSE EAQ A + G V+A AS+D DSL FG PR +R+L
Sbjct: 132 IEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGHVWASASQDYDSLLFGTPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P + V ++L+EL +T ++ ++L IL G DY I+GIG + AL
Sbjct: 192 GKRKLPGKDIYVEVKPELIVLEEVLKELKITREKLVELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ +YQ D + F P TDE +L+ W PDEEG+
Sbjct: 252 EIVKYSKD--------PLAKYQKMSDVDLYAIKEFFLNPP-TTDEYKLE--WKMPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ FL E+ F+ +RV +E++K A Q L+S+FK
Sbjct: 301 LKFLCDEHDFSEERVKNGLERLKKAVKAGRQFTLDSWFK 339
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 209/358 (58%), Gaps = 21/358 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ DN + + E G+ IA+DA ++YQFL + + L + G
Sbjct: 1 MGVTELGKLIPDNLRRRVS---LEQLNGKLIALDAYNALYQFLASIRQPDGTPLMDSQGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+ RTI LLE G+KP+YVFDG+PP+LK E+ KR R A +D +AVE G
Sbjct: 58 VTSHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGK 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K + K+++R + +T D+ KRLL MGVP V+APSE EAQ A + G V+A S+D
Sbjct: 118 KSEARKYAQRALFITSDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNLTMD--------QFIDLCIL 230
DS FGAPR +R+L RK+P + EV L ELN + Q IDL IL
Sbjct: 178 YDSFLFGAPRLVRNLTISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAIL 237
Query: 231 SGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV 289
G DY + I GIG Q AL+LI+++GS++ ++ + + Q P D P++ R F P V
Sbjct: 238 LGTDYNPEGIPGIGPQRALRLIQEYGSLDKLMNTVLKNA-QFPVD-PFK-IREFFLNPPV 294
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKS-SQGRLESFF 346
+++ +K+ P+E+ ++ LV E+ F+ DRV A+E+++ + K+ L+SFF
Sbjct: 295 T---QEVNVKFKEPNEDEVVRLLVEEHDFSQDRVKNALERLRKSMGKAKGSTTLDSFF 349
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 193/360 (53%), Gaps = 49/360 (13%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L L+ +AP SM+ ++ Y G+ IA+D S+ + QF + G
Sbjct: 1 MGITKLAHLIHFDAPASMRSKEIGDYSGKIIALDTSIVVNQFRSAL-----------PGH 49
Query: 61 V-TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ S L G+F RT+ LE +KP++V DG+PP K+ L KR ++ A
Sbjct: 50 LKLSPLAGLFYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWSSSQSPNTGSAF 109
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N+E C RLL LMGVP ++AP EAEA CA L K G V AVASE
Sbjct: 110 NQE-------------------CLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASE 150
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
DMD+L FG LR L + R + E+ + K+LE L L ++F+DLCIL GCDYCD I
Sbjct: 151 DMDTLAFGGTVLLRQLN--AKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKI 208
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
G+G ALKLI++H +IE ++E++NR+ + IP +W Y++AR+LF E + D +
Sbjct: 209 GGLGPSRALKLIKEHHTIEGVMEHVNRKTHPIPLNWQYKDARKLFFETPKIDDP---VLA 265
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEK-------------IKAAKNKSSQGRLESFF 346
WS PDEEGL+ FL E +RV ++K + ++ Q RLE FF
Sbjct: 266 WSEPDEEGLVQFLCKEKPLKEERVRGRMKKFREMLLKRRKQREVNMQMGQTRQSRLEDFF 325
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 218/368 (59%), Gaps = 42/368 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L +L+ +E + GR+IAIDA ++YQFL + + G ++ + G
Sbjct: 1 MGLAELRELI------EPEETDLRALAGREIAIDAFNALYQFLTTIMKDGRPLM-DSRGR 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+ RT+ L+E G+KP+YVFDG+PPDLK++ L +R ++ +A + L A
Sbjct: 54 ITSHLNGLLYRTVNLVEEGIKPVYVFDGEPPDLKRETLERRRERKEEAMEKLRRA---KT 110
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
KE+ EK++++ ++ + +D KRLL LMG+P V+APSE EAQCA + + G V+A S+D
Sbjct: 111 KEEREKYARQVARLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQD 170
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNL-TMDQFIDLC 228
DSL FG+PR +R++ RK P +M E +L++L L + +Q +DL
Sbjct: 171 YDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKPEIMRLE--DVLDQLGLESREQLVDLA 228
Query: 229 ILSGCDYC-DSIRGIGGQTALKLIRQHGSIE-----TILENINRERYQIPEDWPYQEARR 282
IL G DY D + GIG + AL+LIR++GS++ I I R PE + RR
Sbjct: 229 ILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVEPE-----KLRR 283
Query: 283 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG-- 340
LF EPEV D E + W PDEEGL+ FLV E F+ DRV +A+E++K A + +G
Sbjct: 284 LFLEPEVTDDYE---LDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGGR 340
Query: 341 --RLESFF 346
L++FF
Sbjct: 341 QETLDAFF 348
>gi|315230863|ref|YP_004071299.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
gi|315183891|gb|ADT84076.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
Length = 342
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 23/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFL-IVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
KE + E+ GRKIAIDA +IYQFL I+ R GT ++ ++ G +TSHL G+F RTI L+E
Sbjct: 12 KEIEIENLNGRKIAIDALNAIYQFLSIIRQRDGTPLMDSK-GRITSHLSGLFYRTINLME 70
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
AG+KP YVFDG+PP+ KK+EL KR R +A + EA+ G+ E+ +K+++R +V +Q
Sbjct: 71 AGIKPAYVFDGKPPEFKKKELEKRAEAREEAEEKWQEALARGDLEEAKKYAQRASRVNEQ 130
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
+D K+LL+LMG+P V+APSE EAQ A + G+V+A AS+D DSL FGAPR +R+L
Sbjct: 131 LIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGKVWASASQDYDSLLFGAPRLVRNLTI 190
Query: 198 PSSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTA 247
RK+P + V ++L+EL + ++ I+L IL G DY I+G+G + A
Sbjct: 191 TGRRKLPGKDVYVEVKPELIVLEEVLKELKIDREKLIELAILVGTDYNPGGIKGVGPKKA 250
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L+++R ++YQ D + F P V D ++ W PDEEG
Sbjct: 251 LEIVRYSKD--------PLKKYQKMSDVDLYAIKEFFLNPPVTDD---YKLVWKMPDEEG 299
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++ FL E+ F+ +RV +E++K A Q LES+F
Sbjct: 300 ILKFLCDEHDFSEERVKNGLERLKKAIRAGKQSTLESWF 338
>gi|429965038|gb|ELA47035.1| hypothetical protein VCUG_01480 [Vavraia culicis 'floridensis']
Length = 335
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 197/350 (56%), Gaps = 16/350 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI LTK++ E Y +K+A DAS+ YQ+LI + G ++ N
Sbjct: 1 MGIHNLTKIIKKYYRPI--EHPLSFYRTKKMAFDASLLTYQYLIAIRSDGAQLAYNSTS- 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSH+ G F + I L E G+KP++VFDG+PP +K +E+A+R +R +A + +EA E +
Sbjct: 58 -TSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKNAAEKYSEAEEQMD 116
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K ++EK+ KR +K+ K+H D+ K LL MGV + +EAEA CA LC+ G V V +ED
Sbjct: 117 KVEMEKYDKRKLKIGKEHTDEIKLLLDAMGVTYTISENEAEAFCATLCRKGIVDYVCTED 176
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L F AP L++ + K V E+ + +IL ++ L F+DLCIL GCDY +I+
Sbjct: 177 MDALCFRAPVLLKNFV-----KDTVAEYRLDEILRDMKLEFSAFMDLCILLGCDYAGTIK 231
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG A LIR+HG+IE I++ ++ D+ Y++AR F + D + I W
Sbjct: 232 GIGPMKAETLIRRHGNIENIVKELD------ITDYEYEKARETFLSMKNNVDVGFVGIDW 285
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 350
D + FL E F+ R+ +++ + +NK Q RL FK A
Sbjct: 286 QKYDRSRVFEFL-KEKNFDERRINNGLDRYEKCRNKREQSRLSDMFKKRA 334
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 199/333 (59%), Gaps = 20/333 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ + +D ++YQFL + L + +G +TSHL G+F RTI L+E G+KP+YVFD
Sbjct: 25 GKIVVVDGYNALYQFLAAIRGPDGSPLMDSSGRITSHLSGLFYRTINLVEEGIKPVYVFD 84
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G PP+LK +EL +R + R +A EAV+ G+ E +++ + K+T ++ KRLLK
Sbjct: 85 GNPPELKIKELERRKALREEAAKKYEEAVKEGDLEAARRYAMMSSKLTSDMVEEAKRLLK 144
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
+MG+P V+AP+E EAQ A + + G YA AS+D DSL FG+PR +R+L RK+P +
Sbjct: 145 VMGIPWVQAPAEGEAQAAFMVRRGDAYASASQDYDSLLFGSPRLVRNLTISGKRKLPRKD 204
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E++K+ E+L +T +Q ID+ IL G DY + GIG +TAL LIR +GSI
Sbjct: 205 AYVEVKPEVIELSKLTEKLGITREQLIDIGILLGTDYNPEGFEGIGPKTALTLIRTYGSI 264
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E I + R R E+ + + F P V + +++W PD++G++ LV ++
Sbjct: 265 EKIPKGYLRTR----EEVDVVKIKNYFLHPPVTA---EYKLEWIEPDQKGIVEVLVKDHD 317
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGR---LESFFK 347
FN +RV A+E++ A + +GR L+ +FK
Sbjct: 318 FNEERVKNAVERLSKAYKEFLKGRQLGLDQWFK 350
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 203/342 (59%), Gaps = 18/342 (5%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
+E + G+K++IDA +IYQFL + + L + G VTSHL G+F RTI LLE
Sbjct: 7 REVQLSELKGKKVSIDAYNAIYQFLTAIRQPDGTPLMDSQGRVTSHLSGIFYRTISLLEE 66
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+ PIYVFDG+PP+LK QEL +R + +A L +A E G ++++K+S+ ++T
Sbjct: 67 GVIPIYVFDGKPPELKAQELERRRKIKEEAEKKLEKAKEEGETKELKKYSQMATRLTNDM 126
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
++ KRLL+ MG+PVV+APSE EA+ A LC G +A AS+D DSL FGA + +R+L
Sbjct: 127 AEEGKRLLEAMGIPVVQAPSEGEAEAAYLCSQGYTWAAASQDYDSLLFGANKLIRNLTLT 186
Query: 199 SSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTAL 248
RK+P + E+ +L++ +T +Q +D+ IL G DY D I+GIG TAL
Sbjct: 187 GKRKLPKKDVYVEIKPELIELEDLLKKFGITREQLVDIGILIGTDYDPDGIKGIGPVTAL 246
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++I+++G IE +E +Y + D E R +F P VV E L +K P+EE +
Sbjct: 247 RIIKKYGKIEKAVEKGELPKYIL--DLNINEIRSIFLNPPVVKPESSLDLK--EPNEEEI 302
Query: 309 INFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRLESFF 346
L+ E+ F+ DRVT IE++ K AK S Q L+ +F
Sbjct: 303 KKILIDEHNFSEDRVTNGIERLIKAGKEAKGASRQSGLDQWF 344
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 196/339 (57%), Gaps = 21/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ +G+K+AIDA ++YQFL + + L + G +TSHL G F RTI L+EA
Sbjct: 12 KEIELENLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP KK+EL KR R +A + EA+E G E+ +K++ R K+ +
Sbjct: 72 GIKPAYVFDGEPPAFKKKELEKRREAREEAEEKWHEALERGEIEEAKKYAMRATKLNETL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL LMGVPVV+APSE EAQ A + +VYA AS+D DSL FGAPR +R+L
Sbjct: 132 IEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P V ++L EL + ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ ++YQ D + F P V D E +KW PDEEG+
Sbjct: 252 TIVKRSKD--------PLKKYQKDSDVDLYAIKEFFLNPPVTDDYE---LKWREPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ FL E+ F+ +RV +E++K A Q LES+F+
Sbjct: 301 LKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWFR 339
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/339 (41%), Positives = 202/339 (59%), Gaps = 23/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
KE + ES +G+K+AIDA ++YQFL + R GT ++ ++ G +TSHL G F RTI L+E
Sbjct: 12 KEIELESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQ-GRITSHLSGFFYRTINLME 70
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
AG+KP YVFDG+PPD KK+EL KR R +A + EA+E G+ E+ +K++ R +V ++
Sbjct: 71 AGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAMRATRVNEE 130
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
+D K+LL+LMG+PVV+APSE EAQ A + VYA AS+D DSL FGAPR +R+L
Sbjct: 131 LINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTI 190
Query: 198 PSSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTA 247
RK+P V ++L+EL + ++ I+L IL G DY I+GIG + A
Sbjct: 191 TGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L ++++ +YQ D + F P V D E +KW PDEEG
Sbjct: 251 LTIVKRTKD--------PLAKYQKESDVDLYAIKEFFLNPPVTDDYE---LKWREPDEEG 299
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++ FL E+ F+ +RV +E++K A Q LES+F
Sbjct: 300 ILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWF 338
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 199/330 (60%), Gaps = 11/330 (3%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S +E KFE G+ +A+DA+ IYQFL + + L ++ G +TSH G+ RT L+
Sbjct: 10 SPEEIKFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSHFSGILYRTSSLV 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E G+KPIYVFDGQ LKK+ KR + ++ EA+E G +D KF+ R+ ++
Sbjct: 70 EKGIKPIYVFDGQSSALKKETQQKRREIKEESERRWKEALEEGRLDDARKFAVRSSRMFP 129
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + K+L+KLMG+P ++A E EAQ + + G + VAS+D D + FGAPR +++L
Sbjct: 130 EIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVAQGDAWCVASQDYDCMLFGAPRMVKNLT 189
Query: 197 DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 256
++K P + E+ KILE L++T +Q +DL I+ G D+ I+GIG + LKLI++HG
Sbjct: 190 ISGTQKTPEI-IELNKILENLSITREQLVDLAIMVGTDFNQGIKGIGAKKGLKLIKEHGD 248
Query: 257 IETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
I ILE ++ E P + R +F +V +D + +KW DEEG++NFL E+
Sbjct: 249 IYHILEKLDIELDVDP-----RTLREMFLNHDVDSDYD---LKWQKADEEGIVNFLCGEH 300
Query: 317 GFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ +RV A++K+K K +++Q LE +F
Sbjct: 301 DFSQNRVLSAVDKLK--KLQTTQSSLEQWF 328
>gi|256810959|ref|YP_003128328.1| flap endonuclease-1 [Methanocaldococcus fervens AG86]
gi|256794159|gb|ACV24828.1| flap structure-specific endonuclease [Methanocaldococcus fervens
AG86]
Length = 326
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 206/340 (60%), Gaps = 20/340 (5%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
D PK + FE G+K+AID ++YQFL + L N GE+TS G+F
Sbjct: 5 FGDYIPKKI--ISFEDLKGKKVAIDGMNALYQFLTSIRLKDGSPLRNRKGEITSAYNGVF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
+TI LLE + PI+VFDG+PP LK++ R + A + EA+E + E+ K++K
Sbjct: 63 YKTIHLLENDITPIWVFDGEPPKLKEKTRKFRKEMKEKAELKMKEAIEKEDFEEAAKYAK 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
R +T + ++CK LL LMG+P VEAPSE EAQ + + K G V+AV S+D D+L +GAP
Sbjct: 123 RVSYLTPKIVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAP 182
Query: 190 RFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
R +R+L +++++P + E+ ++LE+L +++D ID+ I G DY ++GIG + A
Sbjct: 183 RVVRNLT--TTKEMPEL-IELNEVLEDLRISLDDLIDIAIFIGTDYNPGGVKGIGFKRAY 239
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+L+R + E + + + Y+E RR+FKEP+ VTD L +K P++EG+
Sbjct: 240 ELVRSGVAKEVLKKEVEN----------YEEIRRIFKEPK-VTDNYSLSLK--LPNKEGI 286
Query: 309 INFLVSENGFNSDRVTKAIEKIKA-AKNKSSQGRLESFFK 347
I FLV EN FN +RV K ++++ + +NK+ Q L+++FK
Sbjct: 287 IKFLVDENDFNYERVKKHVDRLYSLIENKTKQKTLDAWFK 326
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/339 (40%), Positives = 204/339 (60%), Gaps = 23/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
KE + E+ +GR++AIDA +IYQFL + R GT ++ ++ G +TSHL G+F RTI L+E
Sbjct: 12 KEIELENLYGRRVAIDAFNAIYQFLSTIRQRDGTPLMDSQ-GRITSHLSGLFYRTINLME 70
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
AG+KP Y+FDG+PPD KK+EL KR R +A + EA+E G+ E+ +K++ R +V +
Sbjct: 71 AGIKPAYIFDGKPPDFKKRELEKRREAREEAEEKWYEALERGDLEEAKKYAMRATRVNEG 130
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
+D K LL+LMG+PV++APSE EAQ A + +VYA AS+D DSL FGAP+ +R+L
Sbjct: 131 LINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPKLVRNLTI 190
Query: 198 PSSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTA 247
RK+P V ++L+EL++ ++ I++ IL G DY I+GIG + A
Sbjct: 191 TGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTDYNPGGIKGIGPKKA 250
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L ++++ ++YQ + + F P V D E +KW PDEEG
Sbjct: 251 LTIVKRTKD--------PLKKYQKESEVDLYAIKEFFLNPPVTDDYE---LKWREPDEEG 299
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+I FL E+ F+ +RV +E++K A Q LES+F
Sbjct: 300 IIKFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLESWF 338
>gi|15669635|ref|NP_248448.1| flap endonuclease-1 [Methanocaldococcus jannaschii DSM 2661]
gi|17432937|sp|Q58839.1|FEN_METJA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157829719|pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|157829720|pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|1592090|gb|AAB99454.1| DNA repair protein RAD2 (rad2) [Methanocaldococcus jannaschii DSM
2661]
Length = 326
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 204/340 (60%), Gaps = 20/340 (5%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
D PK++ FE G+K+AID ++YQFL + L N GE+TS G+F
Sbjct: 5 FGDFIPKNI--ISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
+TI LLE + PI+VFDG+PP LK++ R + A + EA++ + E+ K++K
Sbjct: 63 YKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAK 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
R +T + ++CK LL LMG+P VEAPSE EAQ + + K G V+AV S+D D+L +GAP
Sbjct: 123 RVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAP 182
Query: 190 RFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
R +R+L +++++P + E+ ++LE+L +++D ID+ I G DY ++GIG + A
Sbjct: 183 RVVRNLT--TTKEMPEL-IELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAY 239
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+L+R + + + + + Y E +R+FKEP+ VTD L +K PD+EG+
Sbjct: 240 ELVRSGVAKDVLKKEVEY----------YDEIKRIFKEPK-VTDNYSLSLK--LPDKEGI 286
Query: 309 INFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFK 347
I FLV EN FN DRV K ++K+ NK+ Q L+++FK
Sbjct: 287 IKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 207/353 (58%), Gaps = 22/353 (6%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
LAD +E F G++++ID ++YQFL + + L + G VTSHL G+F
Sbjct: 5 LADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLF 64
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A G E++ K+S+
Sbjct: 65 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 124
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G +A AS+D D++ FGA
Sbjct: 125 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 184
Query: 190 RFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
R +R+L RK+P ++E E+ +L++L +T +Q ID+ IL G DY D
Sbjct: 185 RLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITREQLIDIGILIGTDYNPD 242
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
IRGIG + ALK+I+++G IE +E + I ++ E R LF P+VV EE L
Sbjct: 243 GIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRGLFLNPQVVKPEEALD 300
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLESFF 346
+ + P+ E +IN LV E+ F+ +RV IE+ IK AK S Q L+ +F
Sbjct: 301 L--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 351
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 198/338 (58%), Gaps = 21/338 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ +G+K+AIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KEIELENLYGKKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP KK+EL KR R +A + EA+E GN E+ K+++R +V +
Sbjct: 72 GIKPAYVFDGKPPAFKKKELEKRREAREEAEERWREALERGNIEEARKYAQRATRVNEAL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+PV++APSE EAQ A + G VYA AS+D DSL FGAPR +R+L
Sbjct: 132 VEDAKKLLELMGIPVIQAPSEGEAQAAYIAAKGAVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P + V ++L+ L + ++ I+L IL G DY ++GIG + AL
Sbjct: 192 GKRKLPGKDVYVDVKPELIVLEEVLKALKIDREKLIELAILVGTDYNPGGVKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+++R ++Q D + F P V + E +KW PDEEG+
Sbjct: 252 EIVRHSKD--------PLAKWQKVSDVDLYAIKEFFLNPPVTDNYE---LKWKEPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ FL E+ F+ +RV IE++K A Q LES+F
Sbjct: 301 LKFLCDEHDFSEERVKNGIERLKTAVKAGKQVTLESWF 338
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 207/353 (58%), Gaps = 22/353 (6%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
LAD +E F G++++ID ++YQFL + + L + G VTSHL G+F
Sbjct: 3 LADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A G E++ K+S+
Sbjct: 63 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G +A AS+D D++ FGA
Sbjct: 123 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 182
Query: 190 RFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
R +R+L RK+P ++E E+ +L++L +T +Q ID+ IL G DY D
Sbjct: 183 RLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITREQLIDIGILIGTDYNPD 240
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
IRGIG + ALK+I+++G IE +E + I ++ E R LF P+VV EE L
Sbjct: 241 GIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRGLFLNPQVVKPEEALD 298
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLESFF 346
+ + P+ E +IN LV E+ F+ +RV IE+ IK AK S Q L+ +F
Sbjct: 299 L--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 349
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 193/339 (56%), Gaps = 21/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ GRK+AIDA +IYQFL + + L + G +TSHL G+F RTI L+EA
Sbjct: 12 KELELENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP+ KK+EL KR R +A + A+ G E+ +K+++R K+ +
Sbjct: 72 GIKPAYVFDGKPPEFKKKELEKRAETREEALEKWEIALARGELEEAKKYAQRASKINEIL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL+LMG+P V+APSE EAQ A + G V+A AS+D DSL FG P+ +R+L
Sbjct: 132 IEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P + + +L+EL LT ++ I+L IL G DY I+G+G + AL
Sbjct: 192 GKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ +YQ + + F P D +++W PDEE +
Sbjct: 252 EIVKYSKD--------PLSKYQKTSEVDLYAIKEFFLNPPTTND---YKLEWKLPDEESI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
I FL E+ F+ +RV +E++K Q L+++FK
Sbjct: 301 IKFLCDEHDFSEERVKNGLERLKKVTKTGKQFTLDTWFK 339
>gi|221222286|gb|ACM09804.1| Flap endonuclease 1-A [Salmo salar]
Length = 192
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/170 (65%), Positives = 135/170 (79%), Gaps = 1/170 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ ++YFGRKIAIDASM +YQFL+ V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGN-VLQNENGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A LA+A EAG
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQEAGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 170
+E+I+KFSKR VKVT+QHND+CK+LL LMGVP +EAP EAEA CAAL K+
Sbjct: 120 QENIDKFSKRLVKVTQQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKA 169
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 195/333 (58%), Gaps = 20/333 (6%)
Query: 26 YFGRK-IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIY 84
+F +K IAIDA S+YQFL + + L + G VTSHL G+F RTI +E G+KP+Y
Sbjct: 20 FFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSHLNGLFYRTINYIELGIKPVY 79
Query: 85 VFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKR 144
VFDG+PP+LK++EL +RY + +A EA+E G+ E+ ++++T ++T D K
Sbjct: 80 VFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLEEARIYAQQTSRLTAAMVHDAKL 139
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
LL+ MGVP VEAPSE EAQ A + K G +A S+D DSL FG+PR +R+L RK+P
Sbjct: 140 LLRYMGVPYVEAPSEGEAQAAYMVKKGDAWASGSQDFDSLLFGSPRLVRNLAITGKRKLP 199
Query: 205 VME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQH 254
+ E+ ++L +T Q + + IL G DY + RGIG + ALKL+++
Sbjct: 200 RKDVYVEVKPEIVELEELLRVHGITHQQLVVIGILVGTDYAPEGARGIGVKKALKLVKEL 259
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
E I ++ + D P ++ LF PE VTD +L W PD+E +I LV
Sbjct: 260 KDPEKIFRSV-----EWSSDVPPEKILELFLHPE-VTDSYELT--WKEPDKEKVIELLVE 311
Query: 315 ENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
+ F+ +RVT A++++ KA K Q LES+F
Sbjct: 312 RHQFSMERVTNALDRLEKAVKTHFKQQSLESWF 344
>gi|118575473|ref|YP_875216.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
gi|166973696|sp|A0RU95.1|FEN_CENSY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|118193994|gb|ABK76912.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
Length = 340
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 192/340 (56%), Gaps = 19/340 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S + + ES+ + +AIDA +IYQFL + LT+ G VTSHL G+ R L
Sbjct: 10 SREPTRLESFATKVVAIDAYNAIYQFLATIRGPDGMQLTDARGRVTSHLSGLLYRNASFL 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
G+KP+YVFDG+PP LK E+ +R + + A A AV+AGN +D K++++T +
Sbjct: 70 SMGIKPVYVFDGRPPTLKSAEIERRRNVKKGAAVKYAAAVDAGNMDDARKYAQQTTSMRD 129
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
DD K++LKL G+P ++APSE EA A L ++G YA AS+D DS+ FGA R +R+
Sbjct: 130 GMVDDSKQILKLFGIPYIDAPSEGEATAAYLTQTGDAYASASQDFDSVLFGAKRLVRNFT 189
Query: 197 DPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQT 246
+ RKIP E K L L+LT +Q +D+ IL G D+ D IG +T
Sbjct: 190 NSGRRKIPNRNMYVDVQPEIIETEKTLTTLDLTREQLVDVGILIGTDFNPDGFERIGPKT 249
Query: 247 ALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 306
ALKL+ +HG +E I I E + Y E R++F EPE ++I++ A D +
Sbjct: 250 ALKLVHEHGRLEDI-PRIQDELGSV----SYAEIRKIFLEPE---SPGNIEIEFGATDYD 301
Query: 307 GLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
G+ +LV E F+ DRV A+ +++ A K SQ L+ +F
Sbjct: 302 GITKYLVGERSFSEDRVAAALNRLRRALEKRSQN-LDQWF 340
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 204/344 (59%), Gaps = 22/344 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
+E F G++++ID ++YQFL + + L + G VTSHL G+F RTI +LE
Sbjct: 9 RELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEE 68
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+ PIYVFDG+PP+ K +EL +R + +A L A G E++ K+S+ ++++
Sbjct: 69 GVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIM 128
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
++ K+LL+ MG+P+V+APSE EA+ A L K G +A AS+D D++ FGA R +R+L
Sbjct: 129 VEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTIT 188
Query: 199 SSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQT 246
RK+P ++E E+ +L++L +T +Q ID+ IL G DY D IRGIG +
Sbjct: 189 GKRKLPNKDVYVEIKPELIETEI--LLKKLGITREQLIDIGILIGTDYNPDGIRGIGPER 246
Query: 247 ALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 306
ALK+I+++G IE +E + I ++ E R LF P+VV EE L + + P+ E
Sbjct: 247 ALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRGLFLNPQVVKPEEALDL--NEPNGE 302
Query: 307 GLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLESFF 346
+IN LV E+ F+ +RV IE+ IK AK S Q L+ +F
Sbjct: 303 DIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346
>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
Length = 349
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 205/357 (57%), Gaps = 20/357 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ + K+++ F R +A+DA ++YQFL + + L + G
Sbjct: 1 MGVTELGKLIPEGVRKTVE---FTQLSNRIVALDAYNALYQFLASIRQPDGTPLMDSKGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+ RTI LE + P+YVFDG+PP+ K E+A+R R +A D + +E G
Sbjct: 58 ITSHLSGLLYRTINFLENRIWPVYVFDGKPPEEKTLEIARRRKVREEAMDKWVKLLEEGK 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+ K+++R + +T +D K+LL+LMG+PVV+A ++ EAQ A + + G+ +A S+D
Sbjct: 118 REEARKYAQRALFLTDDMVEDAKKLLRLMGIPVVQAMADGEAQAAVIAREGKAWAAGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLT-MDQFIDLCIL 230
DSL FGAPR +R+L RK+P + E+ ++L+ L L Q IDL IL
Sbjct: 178 YDSLLFGAPRLVRNLAITGRRKLPNKDEYIEIKPEIIELNEVLKALKLKDRTQLIDLAIL 237
Query: 231 SGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV 289
G D D + GIG Q AL+LI++ G +E +L+ + Q P D P + R F P
Sbjct: 238 LGTDLNPDGVPGIGPQRALRLIQEFGGLEKLLQG-PLKNAQFPTD-PLK-IRDYFLNPPY 294
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+I++ PDE G++ FLV E+ FN +RV AIE++K A K + L+SFF
Sbjct: 295 ---NPNYKIEFGQPDERGIVEFLVHEHDFNEERVRNAIERLKKAMGKRRESTLDSFF 348
>gi|261402763|ref|YP_003246987.1| flap endonuclease-1 [Methanocaldococcus vulcanius M7]
gi|261369756|gb|ACX72505.1| flap structure-specific endonuclease [Methanocaldococcus vulcanius
M7]
Length = 326
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 200/322 (62%), Gaps = 18/322 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+K+AID ++YQFL + L N+ GE+TS G+F +TI LLE + PI+VFD
Sbjct: 21 GKKVAIDGMNALYQFLTSIRLKDGSPLKNKKGEITSAYNGIFYKTIHLLENDITPIWVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP LK++ R + A + + EA++ N +++ KF+KR +T + D+CK LL
Sbjct: 81 GEPPKLKEKTRKMRRHMKEQAEEKMKEAMKKENLDEVAKFAKRASYLTPKIVDNCKYLLG 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
LMG+P V APSE EAQ + + K G V+AV S+D DSL +GAPR +R+L +++++P +
Sbjct: 141 LMGIPYVNAPSEGEAQASYMAKKGDVWAVVSQDYDSLLYGAPRVVRNLT--TTKEMPEL- 197
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINR 266
+ +LEEL +++D ID+ IL G DY ++GIG + A +L++ + + + + +
Sbjct: 198 INLDDVLEELRISLDDLIDIAILMGTDYNPGGVKGIGFKRAYELVKSGVAKDVLKKEVEN 257
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
Y+E R++FKEP+ +TDE + ++ P++EG+I FLV EN FN +RV K
Sbjct: 258 ----------YEEIRKIFKEPK-ITDEYSVNLR--LPNKEGIIKFLVDENDFNYERVKKH 304
Query: 327 IEKIKA-AKNKSSQGRLESFFK 347
++++ NK+ Q L+++FK
Sbjct: 305 VDRLYTLIANKTKQKTLDAWFK 326
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 184/343 (53%), Gaps = 49/343 (14%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEV-TSHLQGMFTRTIRLL 76
M+ ++ Y G+ IA+D S+ + QF + G + S L G+F RT+ L
Sbjct: 1 MRSKEIGDYSGKIIALDTSIVVNQFRSAL-----------PGHLKLSPLAGLFYRTLAFL 49
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E +KP++V DG+PP+ K+ L KR ++ A N+E
Sbjct: 50 EHDIKPVFVLDGKPPNQKRAVLEKRAQSTGWSSSQGPNTGSAFNQE-------------- 95
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
C RLL LMGVP ++AP EAEA CA L K G V AVASEDMD+L FG LR L
Sbjct: 96 -----CLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLN 150
Query: 197 DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 256
+ R + E+ + K+LE L L ++F+DLCIL GCDYCD I G+G ALKLI++H +
Sbjct: 151 --AKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIKEHHT 208
Query: 257 IETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
IE ++E++NR+ + IP +W Y++AR+LF E + D + WS PDEEGL+ FL E
Sbjct: 209 IEGVMEHVNRKTHPIPLNWQYEDARKLFFETPKIDDP---VLAWSGPDEEGLVQFLCKEK 265
Query: 317 GFNSDRVTKAIEK-------------IKAAKNKSSQGRLESFF 346
+RV ++K + ++ Q RLE FF
Sbjct: 266 PLKEERVRGRMKKFRETLLKRRKQREVNVQMGQTRQSRLEDFF 308
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 204/351 (58%), Gaps = 18/351 (5%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
LAD +E F G+K++ID ++YQFL + + L + G +TSHL G+F
Sbjct: 5 LADLVKDVKRELSFSELKGKKVSIDGYNALYQFLAAIRQPDGTPLMDSHGRITSHLSGLF 64
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A G E++ K+S+
Sbjct: 65 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEELRKYSQ 124
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS+D DS+ FGA
Sbjct: 125 AILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAK 184
Query: 190 RFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSI 239
R +R+L RK+P + E +L++L +T +Q ID+ IL G DY D I
Sbjct: 185 RLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDYNPDGI 244
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+GIG + ALK+I+++G IE +E + I + E R LF +P+VV EE L +
Sbjct: 245 KGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQVVKPEETLDL- 301
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLESFF 346
+ P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+ +F
Sbjct: 302 -NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDRWF 351
>gi|289192094|ref|YP_003458035.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
gi|288938544|gb|ADC69299.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
Length = 326
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 200/327 (61%), Gaps = 18/327 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
FE G+K+AID ++YQFL + L N GE+TS G+F +TI LLE + P
Sbjct: 16 FEDLKGKKVAIDGMNALYQFLTSIRLKDGSPLRNRKGEITSAYNGVFYKTIHLLENDITP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
I+VFDG+PP LK++ R + A + EA++ + E+ K++KR +T + ++C
Sbjct: 76 IWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENC 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K LL LMG+P VEAPSE EAQ + + K G V+AV S+D D+L +G+PR +R+L ++++
Sbjct: 136 KYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGSPRVVRNLT--TTKE 193
Query: 203 IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETIL 261
+P + E+ ++LE+L +++D ID+ I G DY ++GIG + A +L+R + + +
Sbjct: 194 MPEL-IELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLK 252
Query: 262 ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
+ + Y+E +R+FKEP+ VTD L +K PD+EG+I FLV EN F+ +
Sbjct: 253 KEVEN----------YEEIKRIFKEPK-VTDSYSLSLK--LPDKEGIIKFLVDENDFSYE 299
Query: 322 RVTKAIEKI-KAAKNKSSQGRLESFFK 347
RV K ++K+ NK+ Q L+++FK
Sbjct: 300 RVKKHVDKLYNLIANKTKQKTLDAWFK 326
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 196/339 (57%), Gaps = 21/339 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E +G+K+AIDA ++YQFL + + L + G +TSHL G F RTI L+EA
Sbjct: 12 KEIELERLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP K++EL KR R +A + EA+E G+ E+ +K++ R K+ +
Sbjct: 72 GIKPAYVFDGEPPAFKRRELEKRREAREEAEEKWHEALERGDIEEAKKYAMRATKLNETL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+D K+LL LMGVPVV+APSE EAQ A + +VYA AS+D DSL FGAPR +R+L
Sbjct: 132 IEDAKKLLGLMGVPVVQAPSEGEAQAAYMASKKKVYASASQDYDSLLFGAPRLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P V ++L+EL + ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GRRKLPGKNVYVEVKPELIILEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ +YQ D + F P V D E +KW PDEEG+
Sbjct: 252 TIVKRSKD--------PLAKYQKMSDVDLYAIKEFFLNPPVTDDYE---LKWREPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
I FL E+ F+ +RV +E++K A Q LES+F+
Sbjct: 301 IRFLCDEHDFSEERVKNGLERLKKAIKAGKQRTLESWFR 339
>gi|346430351|emb|CCC55608.1| flap endonuclease-1 [uncultured archaeon]
Length = 343
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 196/329 (59%), Gaps = 19/329 (5%)
Query: 28 GRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVF 86
G+K++IDA +IYQFL + G G+ ++ + G +TSHL G+F RT+ +E G+K +YVF
Sbjct: 24 GKKLSIDAYNAIYQFLTTIRGEDGSPLM-DSHGRITSHLSGLFYRTVNFIEKGLKVVYVF 82
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DG+PP+LK +E+ +R R +A EA GN+E + KF+ R + +D K LL
Sbjct: 83 DGKPPELKAKEIEERRRTREEALKMYEEARAQGNEELMRKFATRAAFLKNYMVEDSKTLL 142
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
LMGVP VEAPSE EAQ A + G + S+D DSL FG+PR +R+L RK+P
Sbjct: 143 DLMGVPWVEAPSEGEAQAAYMAARGVTWGSVSQDYDSLLFGSPRLVRNLTVSGRRKLPNK 202
Query: 207 E---------FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSI 257
+ E K+L+ +T +Q +D+ IL G D+ I+GIG +TALKLI+++G I
Sbjct: 203 DVYVEISPEMIETEKLLKFYEITREQLVDIGILVGTDFNIGIKGIGPKTALKLIKKYGKI 262
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E I E N + +P++ E R++F EP+ V D + L+ W PDEEG+I FL E
Sbjct: 263 ENIKEVPNLSEF-LPQE-VLSEVRKIFLEPQ-VKDVQGLE--WRQPDEEGVIKFLCDERN 317
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ DRV A+ +I+ SS L+ +F
Sbjct: 318 FSVDRVKNALTRIRKRPAASS---LDQWF 343
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 207/350 (59%), Gaps = 20/350 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L +L+ D+A +++ + GR IAID ++YQFL + + L + +G
Sbjct: 1 MGVD-LRELIPDDAKIIIED--LRTLRGRVIAIDGYNALYQFLAAIRQPDGTPLMDGSGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI ++EAG+KP+YVFDG+PP+LK +E+ +R R +A EAV+AG+
Sbjct: 58 ITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAKEIERRRVVREEAARKYEEAVQAGD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++ + ++T + D K LL MG+P V+AP+E EAQ A + + G YA AS+D
Sbjct: 118 LESARRYAMMSARLTDEMVRDAKALLDAMGIPWVQAPAEGEAQAAYMARKGDAYASASQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILS 231
DSL FG+PR +R+L RK+P E E+ K+L +L +T + +D+ IL
Sbjct: 178 YDSLLFGSPRLVRNLTISGRRKLPRREEYVEVKPEVIELDKLLSKLGVTYENLVDIGILL 237
Query: 232 GCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
G DY D GIG + AL+L++ +GS+E I + + + P + ++ F +P+ V
Sbjct: 238 GTDYNPDGFEGIGPKKALQLVKVYGSVEKIPKPLLKS----PVEVDVAAIKKYFLQPQ-V 292
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 340
TD +L+ W PD E + LV E+ F+++RV A+++ A ++ +G
Sbjct: 293 TDNYRLE--WRNPDPEAVKRILVGEHDFSAERVNAALDRYLKAFRENIRG 340
>gi|410722033|ref|ZP_11361349.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
gi|410597930|gb|EKQ52534.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
Length = 328
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 196/330 (59%), Gaps = 11/330 (3%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S +E +FE G+ +A+DA+ IYQFL + + L ++ G +TSH G+ RT L+
Sbjct: 10 SPEEIRFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSHFSGILYRTSSLV 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E G+KPIYVFDGQ LKK+ KR + ++ EA+E G +D KF+ R+ +++
Sbjct: 70 EKGIKPIYVFDGQSSALKKETQQKRREIKEESERKWKEALEEGRLDDARKFAVRSSRMSP 129
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + K+L+KLMG+P ++A E EAQ + + G + VAS+D D + FGAPR +++L
Sbjct: 130 EIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVARGDAWCVASQDYDCMLFGAPRMVKNLT 189
Query: 197 DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 256
++ P + E+ KIL L++T +Q +DL I+ G D+ I+GIG + LKLI +HG
Sbjct: 190 ISGTQNTPEL-IELEKILGTLDITREQLVDLAIMVGTDFNQGIKGIGAKKGLKLIEKHGD 248
Query: 257 IETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
I ILE ++ I D R +F EV +D + +KW DE+G+++FL E+
Sbjct: 249 IFQILEKLD-----IQLDVDPHILRDMFLNHEVDSDYD---LKWQKADEQGIVDFLCGEH 300
Query: 317 GFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ +RV A++K+K K +++Q LE +F
Sbjct: 301 DFSENRVLSAVDKLK--KLQTTQSSLEQWF 328
>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
gi|28380016|sp|Q8TIY5.1|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
Length = 338
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 185/327 (56%), Gaps = 19/327 (5%)
Query: 29 RKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG 88
R +A+DA +++QFL ++ + L N G+VTSHL G+ RT L+EAG+KP+++FDG
Sbjct: 22 RVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVEAGIKPVFIFDG 81
Query: 89 QPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 148
+PPDLK + L++R R + + A G+ E K+++ + +V ++ +D K LL +
Sbjct: 82 KPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAAYKYAQASSRVDQEIVEDSKYLLGI 141
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF 208
MG+P ++AP E EAQ A + VAS+D DS FGAP+ +R++ RK+P
Sbjct: 142 MGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAVTGKRKLPGKNV 201
Query: 209 EV---------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
V + L L + DQ ID+ I G DY + +G +TALKLI++HG I
Sbjct: 202 YVDVELEVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGDIHA 261
Query: 260 ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
+L + E + R+LF PEV D E IKW+ PD E LI FL EN F+
Sbjct: 262 VLREKDMEIEGL------DRIRKLFTHPEVTEDYE---IKWTKPDSEKLIKFLCEENDFS 312
Query: 320 SDRVTKAIEKIKAAKNKSSQGRLESFF 346
+DRV KA E++KAA + Q L+ +F
Sbjct: 313 TDRVEKAAERLKAASG-ARQKTLDQWF 338
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 184/327 (56%), Gaps = 19/327 (5%)
Query: 29 RKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG 88
R +A+DA +++QFL ++ + L N G+VTSHL G+ RT L+EAG+KP++VFDG
Sbjct: 22 RVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDG 81
Query: 89 QPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 148
+PP++K L +R R + + A GN E K+++ + KV + +D K LL +
Sbjct: 82 KPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLEAAYKYAQASSKVDQDIIEDSKYLLDI 141
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---- 204
MG+P ++AP E EAQ A + VAS+D DS FGAP +R+L RK+P
Sbjct: 142 MGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNV 201
Query: 205 -----VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ E+ + L+ L + DQ ID+ I G DY + +G +TALKLI++HG+I
Sbjct: 202 YVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHA 261
Query: 260 ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
+L RE+ E + LF P+V D E IKW PD E LINFL EN F+
Sbjct: 262 VL----REKGMEIE--ALDSIKELFTHPDVTDDYE---IKWGKPDSEKLINFLCDENDFS 312
Query: 320 SDRVTKAIEKIKAAKNKSSQGRLESFF 346
DRV KA +++KAA + Q L+ +F
Sbjct: 313 EDRVVKAADRLKAASG-ARQQTLDQWF 338
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 189/333 (56%), Gaps = 39/333 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L L+ +AP ++ + Y G+ IA+D S+ + QF R T +L
Sbjct: 1 MGITKLADLIRSDAPDAISYKDITDYTGKVIALDTSIVVNQF-----RAATPLL------ 49
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
S L G+F RT+ LE G+KP++VFDG+PP KK L KR A AG
Sbjct: 50 --SPLTGLFFRTLTFLEHGIKPVFVFDGKPPGEKKAVLEKR-------------AQTAG- 93
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+S T + Q +C +LLK +GVPV++AP +AEA CA L + G V+AVASED
Sbjct: 94 ----RNYSNWTGTASSQ-TKECLQLLKCLGVPVIQAPGDAEALCAQLVREGTVHAVASED 148
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FGA +R L + + V+E+ + K+LE+L + +F+DLCIL GCDYC+ I
Sbjct: 149 MDTLPFGANILIRQLN--AKKDSEVIEYSLPKLLEKLQIGHKEFVDLCILLGCDYCEKIP 206
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE-PEVVTDEEQLQIK 299
G+G + AL LI++H +IE ++ +INR+ + +P W Y+EAR++F + P+ E +
Sbjct: 207 GLGPKRALTLIQKHRTIEDVVLHINRKTHPVPNIWKYREARKIFLDGPQSSAPE----LI 262
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 332
W+ P+EE L+ FL +R+ + K +
Sbjct: 263 WTEPNEEALVEFLCHTKRVKEERIRNRMVKFRT 295
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 184/327 (56%), Gaps = 19/327 (5%)
Query: 29 RKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG 88
R +A+DA +++QFL ++ + L N G+VTSHL G+ RT L+EAG+KP++VFDG
Sbjct: 22 RVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDG 81
Query: 89 QPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 148
+PP++K L +R R + + A GN E K+++ + KV + +D K LL +
Sbjct: 82 KPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLEAAYKYAQASSKVDQDIIEDSKYLLDI 141
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---- 204
MG+P ++AP E EAQ A + VAS+D DS FGAP +R+L RK+P
Sbjct: 142 MGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNV 201
Query: 205 -----VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ E+ + L+ L + DQ ID+ I G DY + +G +TALKLI++HG+I
Sbjct: 202 YVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHA 261
Query: 260 ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
++ RE+ E + LF P+V D E IKW PD E LINFL EN F+
Sbjct: 262 VI----REKGMEIE--ALDSIKELFTHPDVTDDYE---IKWGKPDSEKLINFLCDENDFS 312
Query: 320 SDRVTKAIEKIKAAKNKSSQGRLESFF 346
DRV KA +++KAA + Q L+ +F
Sbjct: 313 EDRVVKAADRLKAASG-ARQQTLDQWF 338
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 198/338 (58%), Gaps = 21/338 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + E+ G+K+A+DA ++YQFL + + L + G +TSHL G F RTI L+EA
Sbjct: 12 KEIELENLHGKKVAVDAFNAMYQFLSTIRQPDGTPLMDSKGRITSHLSGFFYRTINLMEA 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KP YVFDG+PP+ KK+E+ KR R +A + EA+E G+ E+ +K++ R +V ++
Sbjct: 72 GIKPAYVFDGKPPEFKKKEIEKRKEAREEAEEKWQEALEKGDLEEAKKYAMRATRVNEEL 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
D K+LL+LMG+PVV+APSE EAQ A + G+VYA AS+D DSL FGAP+ +R+L
Sbjct: 132 ISDAKKLLELMGIPVVQAPSEGEAQAAYMAAKGKVYASASQDYDSLLFGAPKLVRNLTIT 191
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
RK+P E V ++L+EL + ++ I+L IL G DY I+GIG + AL
Sbjct: 192 GRRKLPGKEVYVEVKPELIVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKAL 251
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
++++ N +Y + + F P V D E + W PDEEG+
Sbjct: 252 MIVKRI--------NDPLRKYSNESEVDLYAIKEFFLNPPVTDDYE---LTWREPDEEGI 300
Query: 309 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ FL E+ F+ +RV +E+++ A Q LES+F
Sbjct: 301 LRFLCEEHDFSEERVKGGLERLRKAVESGKQRTLESWF 338
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 204/388 (52%), Gaps = 59/388 (15%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L L+ AP S+ + Y G+ IA+D S+ + QF A
Sbjct: 1 MGITKLADLIRAEAPDSISHRDISDYAGKVIALDTSVVVNQF-------------RAATP 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
++S L+G+F RT+ LE +KP++VFDG+PP K L KR AEA AG
Sbjct: 48 LSSPLRGLFFRTLTFLEHDIKPVFVFDGKPPVEKLPLLEKR-----------AEA--AGW 94
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + DC +LK +GVPVV+AP +AE CA+L + G+ +AVASED
Sbjct: 95 SRPLR------TGIASSQTRDCLEVLKHLGVPVVQAPGDAEGLCASLVREGRAHAVASED 148
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FGA +R L + + ++E+ + K+LE L +++++ +DLCIL GCDYCD I
Sbjct: 149 MDTLPFGANVLIRQLN--AKKDSEIVEYSLPKLLEALRISLEELVDLCILLGCDYCDKIP 206
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + AL LI++H +IE +L NINRE + +P W ++E+R++F +P E + W
Sbjct: 207 GLGPKRALALIQKHRTIENVLLNINRETHPVPHLWKFKESRQIFLDPPGPPTPE---LVW 263
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIK-------------AAKNKSSQGRLESFFK 347
+ PDEE L+ FL +RV +E + A Q R+ FF+
Sbjct: 264 TEPDEEALVKFL--RPIMKEERVRHRMETFREKRRDLREEREKEKAAGHCRQTRMVDFFR 321
Query: 348 PVANTSAPIKRKEPENTPKATTNKKSKA 375
+ P++ P ++ +KK+++
Sbjct: 322 ITRKRNQPVE-------PSSSGSKKTRS 342
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 203/346 (58%), Gaps = 20/346 (5%)
Query: 15 PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIR 74
P +++ ++ G+ +AIDA ++YQFL + + L + G +TSHL G+F RTI
Sbjct: 11 PNAIQTLSLDALRGKAVAIDAYNALYQFLAAIRQPDGTPLMDSRGRITSHLSGLFYRTIN 70
Query: 75 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 134
L+E G+K +YVFDG+PP++K E+ +R +++A EA++ G+ E ++++ ++
Sbjct: 71 LIEHGIKVVYVFDGKPPEIKSIEIERRKKVKSEAAKKYEEAIKKGDLEAARRYAQMASRL 130
Query: 135 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 194
T+ + KRLL MGVP V+AP++ EAQ A + + G V+A AS+D D+L FGAPR +R+
Sbjct: 131 TEDMVKEAKRLLDAMGVPWVQAPADGEAQAAYMARKGDVWAAASQDYDALLFGAPRLVRN 190
Query: 195 LMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGG 244
L RK+P + E+ K+L+ L +T +Q I + IL G DY D +RGIG
Sbjct: 191 LTITGRRKLPKKDVYVEIKPELIELDKLLKALGITREQLIVIGILVGTDYNPDGVRGIGP 250
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+TAL++++ + +L ++ R + + ++ F P VTDE +L+ W PD
Sbjct: 251 KTALRMVKAQPDVRKLLRSLPRNEFPTEPEKIFE----YFLNPP-VTDEYKLE--WREPD 303
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFK 347
E+ + LV E+ F+ +RV AI+++K A K+ Q L+ +FK
Sbjct: 304 EKMIYEILVVEHDFSPERVKNAIQRLKKAYREHFKTKQLGLDMWFK 349
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 196/328 (59%), Gaps = 18/328 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
GR IAIDA S+YQFL ++ + L + G VTSHL G+ RT + G+KP+YVFD
Sbjct: 21 GRVIAIDAYNSLYQFLSIIRQPDGTPLRDSRGRVTSHLSGLLYRTANYMAEGIKPVYVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK + + +R R A ++ EA+E G+ E+ +++ +T+ D+ K+LL
Sbjct: 81 GRPPELKMRTIQERMHVRTRALEEWEEALERGDLEEARTRAQQASFLTRDMVDEAKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MGVP V+APSE EAQ A + + G YA AS+D DSL FG PR +R++ RK+P
Sbjct: 141 HMGVPWVQAPSEGEAQAAFMAQRGDAYASASQDFDSLLFGTPRLVRNMAITGKRKLPRKR 200
Query: 208 FEVA---------KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
V + L+ L +T +Q +D+ IL G D+ I+GIG +TALKLI++ GS+E
Sbjct: 201 VYVEVKPEMLVLNETLKNLEITREQLVDIGILVGTDFNPGIKGIGPKTALKLIKKFGSLE 260
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
+++ E+ + E+ Y+E R +F P VT+E +LQ W DE+ L+ FL E+ F
Sbjct: 261 RVMD----EKGIVIEN--YEEIRNIFLNPP-VTNEYKLQWMWL--DEQKLLEFLCEEHDF 311
Query: 319 NSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ +RV A+EKIK K Q L+++F
Sbjct: 312 SRERVLSAVEKIKMFKKYREQRSLDAWF 339
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 195/332 (58%), Gaps = 20/332 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ I ID ++YQFL + + L + G +TSHL G+F RTI ++EAG+KP+YVFD
Sbjct: 35 GKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFD 94
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK +E+ +R + + +A EAV++G+ E +++ + K+T++ D K LL
Sbjct: 95 GKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLD 154
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P V+AP+E EAQ A + K G YA AS+D DSL FG+P+ +R+L RK+P
Sbjct: 155 AMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKN 214
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E+ K+L +L +T++ ID+ IL G DY D GIG + AL+L++ +G I
Sbjct: 215 EYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGI 274
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E I + I + P + ++ F +P+V + +I+W PD + + LV E+
Sbjct: 275 EKIPKPILKS----PIEVDVIAIKKYFLQPQVT---DNYRIEWHTPDPDAVKRILVDEHD 327
Query: 318 FNSDRVTKAIEK-IKAAKN--KSSQGRLESFF 346
F+ DRV+ A+E+ +KA K + Q L +F
Sbjct: 328 FSIDRVSTALERYVKAFKENIRGEQKGLSKWF 359
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 21/306 (6%)
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
N G++TSHL G+F RT+ LLE G+ PIYVFDG+PP++K QEL R + +A L A
Sbjct: 2 NREGKITSHLNGLFYRTVNLLEQGVIPIYVFDGKPPEIKAQELENRRKLKEEAMKKLERA 61
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E G E++ K+S+ T ++T ++ KRLL LMG+P V+APSE EA+ A + G VYA
Sbjct: 62 KEEGKIEEVRKYSQMTSRLTSSMANEGKRLLSLMGIPTVQAPSEGEAEAAYMNSQGLVYA 121
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFID 226
AS+D DSL FGA R +R+L RK+P + E +L++L +T D+ ID
Sbjct: 122 AASQDYDSLLFGATRLIRNLTISGKRKLPNKDAYVEVKPEVIEADLLLKKLGITRDELID 181
Query: 227 LCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPE-DWPYQEARRLF 284
+ IL G DY D I+GIG + A KLI+ + I E+I+++ + + D+ Y++ R +F
Sbjct: 182 IAILIGTDYNPDGIKGIGPKRAYKLIKTYKRI----EDIDKKEFDLELIDFDYKKIREMF 237
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA----KNKSSQG 340
PEVV +E L + + +G+++FLV EN F+ DRV A+E+++ A K Q
Sbjct: 238 LRPEVVLPKEPLDL--GDVNVQGVVDFLVKENDFSEDRVVAALERLQRAMREVKESKRQT 295
Query: 341 RLESFF 346
L+ +F
Sbjct: 296 GLDQWF 301
>gi|15679628|ref|NP_276745.1| flap endonuclease-1 [Methanothermobacter thermautotrophicus str.
Delta H]
gi|28380011|sp|O27670.1|FEN_METTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|2622760|gb|AAB86106.1| DNA repair protein Rad2 [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 328
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 194/325 (59%), Gaps = 11/325 (3%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
+ E GR +A+DA+ ++YQFL + + L + G VTSHL G+ RT ++E ++
Sbjct: 15 RLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSHLSGILYRTAAVMEREIR 74
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
IYVFDG+ LK + +++R R + + A+E G+ + +K++ R+ +++ + +
Sbjct: 75 VIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRALEEGDIDRAKKYAVRSSRMSSEILES 134
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
KRLL+L+G+P V+AP E EAQ + + K G +AVAS+D D L FGAPR +R+L
Sbjct: 135 SKRLLELLGIPYVQAPGEGEAQASYMVKMGDAWAVASQDYDCLLFGAPRVVRNLTLSGKL 194
Query: 202 KIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
+ P + E+ L EL+++ Q +D+ +L G D+ + ++GIG + LKLIR+ G I ++
Sbjct: 195 EDPEI-IELESTLRELSISHTQLVDMALLVGTDFNEGVKGIGARRGLKLIREKGDIFKVI 253
Query: 262 ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
++ + P Q RR+F EPEV D E I+W PD EG+I FL +E+GF+ D
Sbjct: 254 RDLEADIGGDP-----QVLRRIFLEPEVSEDYE---IRWRKPDVEGVIEFLCTEHGFSED 305
Query: 322 RVTKAIEKIKAAKNKSSQGRLESFF 346
RV A++K + A S+Q LE +F
Sbjct: 306 RVRAALKKFEGA--SSTQKSLEDWF 328
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 185/325 (56%), Gaps = 19/325 (5%)
Query: 31 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP 90
+AIDA ++YQFL ++ + L + G++TSHL G+ R L+EAG+KPI+VFDG+P
Sbjct: 24 VAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSHLSGILYRLTSLIEAGVKPIFVFDGKP 83
Query: 91 PDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMG 150
PD K LAKR+ R AT +A G +E+ K+++ + KVT++ DD RLL+LMG
Sbjct: 84 PDFKSDTLAKRHEVRESATAKWEDAKAQGLEEEAYKYAQASSKVTREMIDDSVRLLELMG 143
Query: 151 VPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV 210
+P V+APSE EAQ + + + G + S+D DS FGAP+ +R+L RK+P V
Sbjct: 144 IPYVKAPSEGEAQASYMVQKGDADYIGSQDYDSFLFGAPQVVRNLTITGKRKLPKKNIYV 203
Query: 211 ---------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
L EL +T Q ID+ + G DY + IG + ALKL+++HG I+ +L
Sbjct: 204 DVKPEVLSLVDSLGELGITRQQLIDIAMCVGTDYNTGLENIGPKRALKLVKEHGDIKVVL 263
Query: 262 ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
+ + ++ + R F P V D E +KW PD G+I+ L ++ F+ +
Sbjct: 264 KELGKDIEDL------DAKRDFFMNPPVTDDYE---LKWIKPDRAGVIDLLCKKHDFSEE 314
Query: 322 RVTKAIEKIKAAKNKSSQGRLESFF 346
RV KA+++++A SQ L+ +F
Sbjct: 315 RVNKALDRLEANIG-GSQSTLDQWF 338
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 192/333 (57%), Gaps = 22/333 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
GR + ID ++YQFL + + L + G +TSHL G+F RTI +LE G+KP YVFD
Sbjct: 25 GRIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFD 84
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP++K +E+ KR R DA+ EA+ G+ E +++ + K+T + D K+LL
Sbjct: 85 GKPPEIKAREIEKRRKIREDASKKYEEALRRGDVEAARRYAMMSAKLTDEMVHDAKKLLD 144
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P ++A +E EAQ A + G +A AS+D DSL FG+PR +R+L RK+P
Sbjct: 145 AMGIPWIQAVAEGEAQAAYIVGKGDAWASASQDYDSLLFGSPRLIRNLTISGRRKLPRKN 204
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E+ K+LE+L +T +Q I + +L G DY D ++GIG + AL+L++ + ++
Sbjct: 205 VYIEIKPEIIELKKLLEKLGITREQLIYVALLIGTDYNPDGVKGIGPKKALQLVKAYKTL 264
Query: 258 ETILENINRERYQI-PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
+ IL+ I + + + PE + F P V TD +++W PDE + LV E+
Sbjct: 265 DKILKAIPKTEFPVEPE-----KIVEYFLNPPVTTD---YKLEWKEPDESKIREILVEEH 316
Query: 317 GFNSDRVTKAIEKIKAAKN---KSSQGRLESFF 346
FN +RV A+E++ A +S Q LE++F
Sbjct: 317 DFNPERVKNAVERLVKAYREHIRSKQMGLEAWF 349
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 191/339 (56%), Gaps = 26/339 (7%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE +F+ FG+ IAIDA ++YQFL + + G E L + G +TSHL G+F RTI LLE
Sbjct: 14 KEIEFKQLFGKVIAIDAFNALYQFLFSIRQDG-EPLRDSKGRITSHLSGLFYRTINLLEY 72
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KPIYVFDG PP K KR + EA++ GN ++ K++K K+
Sbjct: 73 GIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLDSYM 132
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
++ K+LL+ MG+P V+APSE EA+ A L K G S+D DSL FG+PR +R++
Sbjct: 133 VEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLLFGSPRVVRNITIS 192
Query: 199 SSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P V+E E +L +T +Q I + +L G DY + + GIG +TA
Sbjct: 193 EKRKLPGKNIYVEVKPEVIELEA--VLNYWKITREQLIAIAMLLGTDYNEKVPGIGPKTA 250
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
++++++ G ++ E Y+IP +E F P V+ E KW P++E
Sbjct: 251 IEIVKRFGDPIKVI-----EYYKIPNG---KEIFEFFLNPPVIDFEP----KWGKPNKEL 298
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ LV E+ FN +RV +AIE+++ A NK +Q L SFF
Sbjct: 299 IFKILVEEHDFNPERVERAIERLEKALNKINQKTLFSFF 337
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 196/332 (59%), Gaps = 20/332 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ I ID ++YQFL + + L + +G +TSHL G+F RTI ++EAG+KP+YVFD
Sbjct: 35 GKIIVIDGYNALYQFLAAIRQPDGTPLMDNSGRITSHLSGLFYRTINIVEAGIKPVYVFD 94
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK +E+ +R + + +A EAV++G+ E +++ + K+T++ D K LL
Sbjct: 95 GKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLD 154
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P V+AP+E EAQ A + K G YA AS+D DSL FG+P+ +R+L RK+P
Sbjct: 155 AMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKN 214
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E+ K+L +L +T++ ID+ IL G DY D GIG + AL+L++ +G I
Sbjct: 215 EYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGI 274
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E I + + + P + ++ F +P+V + +I+W PD + + LV E+
Sbjct: 275 EKIPKPLLKS----PVEVDVVAIKKYFLQPQVT---DNYRIEWHTPDPDVVKRILVDEHD 327
Query: 318 FNSDRVTKAIEK-IKAAKN--KSSQGRLESFF 346
F+ DRV+ A+E+ +KA K + Q L +F
Sbjct: 328 FSIDRVSTALERYVKAFKENIRGEQKGLSKWF 359
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 205/362 (56%), Gaps = 27/362 (7%)
Query: 1 MGIKGLTKLLADNAP-KSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
M I G+ L D P K+ +E ++ G +A+D +YQFL + + L + G
Sbjct: 1 MKILGVN--LKDLIPEKAKQEIDLKALKGYTVALDGYNMLYQFLAAIRQPDGTPLIDSKG 58
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+TSH+ G+F RTI L+E G+KPIYVFDG+PP++KK+E+ R ++R + +A + G
Sbjct: 59 NITSHISGLFYRTINLIEEGVKPIYVFDGKPPEMKKKEIEDRINRRQQYAEKYQKAKQEG 118
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
E+ +K+++ + ++ + +D K+LL MG+P V+AP++ EAQ A + K G VYA S+
Sbjct: 119 KIEEAKKYAQASTSLSNKMVEDAKQLLTYMGIPWVQAPADGEAQAAYMAKKGDVYATGSQ 178
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCIL 230
D DSL FG+P+ LR+L RK+P E + +L+ L +T +Q I + IL
Sbjct: 179 DYDSLLFGSPKLLRNLAITGKRKLPNKEEYIEIKPELINLNDMLKALEITREQLIVIGIL 238
Query: 231 SGCDYC-DSIRGIGGQTALKLIRQHGSIETILEN--INRERYQIPEDWPYQEARRLFKEP 287
G D+ D +G G +TALK +++H L + +N E I + + Y F P
Sbjct: 239 LGTDFNPDGFKGYGPKTALKYVKEHRDPIKALSSLKVNDEDIDIMKIYEY------FLNP 292
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQGRLES 344
+I+W P+EE +I+ LV E+ FN DRV KA+E++K + KS Q RL++
Sbjct: 293 ---PSNPNYKIEWRDPNEEKIIDMLVREHDFNDDRVKKALERLKKSFKESVKSKQARLDN 349
Query: 345 FF 346
+F
Sbjct: 350 WF 351
>gi|161528211|ref|YP_001582037.1| flap endonuclease-1 [Nitrosopumilus maritimus SCM1]
gi|226700954|sp|A9A4B0.1|FEN_NITMS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|160339512|gb|ABX12599.1| XPG I domain protein [Nitrosopumilus maritimus SCM1]
Length = 340
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 189/334 (56%), Gaps = 19/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
E++ + IAIDA +IYQFL + L++ G +TSHL G+ R + L G+KP
Sbjct: 16 LEAFSNKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSLGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +A+ GN ED K++++T + +
Sbjct: 76 VYVFDGKPPSLKTAEIERRKQIKMDATIKYEKAIADGNMEDARKYAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+LL G+P +EAPSE EA A L +GQ YA AS+D DS+ GA R +R+ + RK
Sbjct: 136 KQLLTYFGIPYIEAPSEGEATAAHLTNTGQAYASASQDFDSILCGAKRLVRNFTNSGRRK 195
Query: 203 IP--------VME-FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP V E E K L+ L LT ++ ID+ IL G D+ + +G +TALK+I+
Sbjct: 196 IPNKNTYIDIVPEIIETQKTLDSLELTREELIDVGILIGTDFNPNGFERVGPKTALKMIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
QH LE I + + Q+ E+ YQE R++F PEV +E I + + EG+ N+L
Sbjct: 256 QHSK----LEEIPQIQEQL-EEIDYQEIRKIFLNPEVADVKE---IVFENVNYEGMSNYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
V E F+ DRV + ++K A K SQ L+ +F
Sbjct: 308 VRERSFSEDRVNSTLNRLKKALEKKSQN-LDQWF 340
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 198/337 (58%), Gaps = 17/337 (5%)
Query: 15 PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIR 74
P++++E + +AIDA ++YQFL + + L + G +TSHL G+F RTI
Sbjct: 11 PEAIQEIDLAHLKYKVVAIDAYNALYQFLTAIRQPDGTPLMDSKGRITSHLSGLFYRTIN 70
Query: 75 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 134
L+E G+K +YVFDG+PP++K E+ +R +++A EAV+ G+ + ++++ ++
Sbjct: 71 LMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEAVKKGDTKAARRYAQMAARL 130
Query: 135 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 194
T + +D K+LL MGVP V+AP+E EAQ A + + G +A AS+D DSL FG+PR +R+
Sbjct: 131 TDEMVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLVRN 190
Query: 195 LMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGG 244
L RK+P + E+ K+L+ L +T +Q + L IL G DY D ++GIG
Sbjct: 191 LAITGRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGILIGTDYNPDGVKGIGP 250
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+TALK+++ H +L+ + R++ P D P + F P V TD +++W PD
Sbjct: 251 KTALKMVKAHRDPVKLLQGL--PRHEFPTD-PLK-IYEYFLNPPVTTD---YKLEWREPD 303
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E+ + LV + F+ +RV A+E++K A + +G+
Sbjct: 304 EKKVFEILVEGHDFSPERVRNALERLKKAYREHFRGQ 340
>gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
Length = 349
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 201/357 (56%), Gaps = 20/357 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KL+ D+ K++ F R IA+DA ++YQFL + + L + G
Sbjct: 1 MGVTELGKLIPDSIRKAVD---FMQLSNRIIAMDAYNALYQFLASIRQPDGTPLMDTKGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+ RTI LE + P+YVFDG+PP+ K E+ +R R +A D + +E G
Sbjct: 58 ITSHLSGLLYRTINFLENRIWPVYVFDGKPPEEKTLEIVRRRRVREEAMDKWVKLLEEGK 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E+ K+++R + +T +D K+LL LMG+PVV+A ++ EAQ A + K G+ +A S+D
Sbjct: 118 REEARKYAQRALFLTDDMVEDAKKLLVLMGIPVVQAMADGEAQAAVIAKEGKAWAAGSQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNL-TMDQFIDLCIL 230
DSL FGAPR +R+L RK+P + E+ +IL L L Q IDL +L
Sbjct: 178 YDSLLFGAPRLVRNLAITGRRKLPNKDEYVEIRPEIIELNEILRALKLKDRIQLIDLAVL 237
Query: 231 SGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV 289
G D D + GIG Q ALKLI++ GS+E +L+ + Q P D P + R F P
Sbjct: 238 LGTDLNPDGVPGIGPQRALKLIQEFGSLEKLLQG-PLKNAQFPMD-PLK-IRDYFLNPPY 294
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I++ DE G+I FLV E+ FN +RV AIE+++ A K + L+SFF
Sbjct: 295 ---NPNYAIEFRQSDERGIIEFLVHEHDFNEERVRNAIERLRKAMGKRRESTLDSFF 348
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 191/323 (59%), Gaps = 21/323 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
+ +AID+ IYQFL + L N GE+TS G+F +TI LL + PI+VFD
Sbjct: 21 NKTVAIDSMNIIYQFLSSIRLRDGAPLRNSKGEITSPYNGIFYKTIYLLNNEITPIWVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+LK + +R + A+ D A N ED++K++KR + D+CK+LLK
Sbjct: 81 GKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINYLEPNTVDNCKKLLK 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
LMG+P ++APSE EAQCA + K+G Y V S+D D+L +GAPR +R++ S++ + +ME
Sbjct: 141 LMGIPYIDAPSEGEAQCAHMIKNGDAYCVVSQDYDALLYGAPRTVRNIT-ASNKPLELME 199
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETI--LENI 264
E IL+ L++++D ID+ IL G DY I+GIG + AL +I+ E I +EN
Sbjct: 200 IE--DILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKNKKMNEYIKDIEN- 256
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
Y+E + +FK P+VV D + IK +P+ EGL FL+ EN F+ +R+
Sbjct: 257 ------------YEEIKNIFKNPKVV-DYTKEDIKLKSPNIEGLKEFLIEENDFSPNRIL 303
Query: 325 KAIEKI-KAAKNKSSQGRLESFF 346
+I+K+ K K SQ L+S+F
Sbjct: 304 PSIKKLDKLLNEKRSQTSLDSWF 326
>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
Length = 339
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 182/327 (55%), Gaps = 19/327 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ +AIDA +IYQFL + + L + G VTSHL G+ RT L+EAG+K ++VFD
Sbjct: 22 GQIVAIDAYNTIYQFLSSIRQRDGTPLKDSRGRVTSHLSGLLYRTTNLVEAGLKLVFVFD 81
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G PPD K + KR R A + EA+ AG +ED K+++ T ++ + D K LL
Sbjct: 82 GVPPDFKAATIEKRRKIRDTADREWKEALAAG-REDAFKYAQATSRLQPEMVADAKSLLT 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV-- 205
MG+PVVEA SE EAQ A + +SG V V S+D DSL FGAP +R+L RK+P
Sbjct: 141 SMGIPVVEAASEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKN 200
Query: 206 ----MEFEVAKI---LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
++ E+ ++ L+ L +T +Q ID+ IL G DY I GIG + AL+LI +HGSIE
Sbjct: 201 VYVDVKLEIIELQPNLDRLGITQEQLIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIE 260
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
L + + E + F P+V D + W PDE + L E+GF
Sbjct: 261 DALPILGESIEHL------DEIKNFFLNPDVTDD---YSLTWKKPDESKIAELLCHEHGF 311
Query: 319 NSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ RV KA+E++ A + SQ L+ +
Sbjct: 312 SEVRVAKAVERLVRASDSMSQSTLDMW 338
>gi|407464594|ref|YP_006775476.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047782|gb|AFS82534.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
Length = 340
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 19/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
E++ R IAIDA +IYQFL + L++ G +TSHL G+ R + L G+KP
Sbjct: 16 LEAFSNRVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSLGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +AV AGN ED KF+++T + +
Sbjct: 76 VYVFDGRPPSLKTAEIERRKQIKKDATVKYEKAVAAGNMEDARKFAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+ L +G+P +EAPSE EA A L +GQ YA AS+D DS+ GA R +R+ RK
Sbjct: 136 KQFLTYLGIPYIEAPSEGEATAAHLTNTGQAYASASQDYDSILCGAKRLVRNFTTSGRRK 195
Query: 203 IPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP E K L+E+ LT ++ ID+ IL G D+ + IG +TA+KLI+
Sbjct: 196 IPNRNTYIDILPEIIETQKTLDEIGLTREELIDVGILIGTDFNPNGFERIGPKTAMKLIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
Q+ LE+I + + Q+ E +++ R +F PEV +E I ++ D EG+ N+L
Sbjct: 256 QYSR----LEDIPQIQEQLQE-IDFKQIRNIFLNPEVAEVDE---IVFNEVDYEGVTNYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
V E F+ DR+ + ++K A K SQ L+ +F
Sbjct: 308 VKERSFSEDRIQSTLNRLKKALEKKSQN-LDQWF 340
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 199/348 (57%), Gaps = 26/348 (7%)
Query: 15 PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIR 74
P+++KE + ES GR IAIDA ++YQFL + + L + G VTSHL G+F RTI
Sbjct: 14 PEAIKEIELESLKGRTIAIDAYNALYQFLAAIRQPDGTPLIDNKGRVTSHLSGIFYRTIN 73
Query: 75 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 134
L+EAG+KPIYVFDG PP LK++EL KR + +A A+ E+ K+++ + ++
Sbjct: 74 LIEAGIKPIYVFDGLPPSLKEKELEKRRKVKEEAAKKYQVAIAEEKYEEARKYAQISTRL 133
Query: 135 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 194
+ + +LL MG+P V+AP+E EAQ A + K G V++ S+D DS+ FG+PR +R+
Sbjct: 134 NDEMVKEAIKLLDAMGLPTVQAPAEGEAQAAYMAKKGDVWSSGSQDYDSILFGSPRVVRN 193
Query: 195 LMDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGI 242
L RK+P V+E V I E+L + ++ I + I+ G DY D I+G+
Sbjct: 194 LTVSGKRKLPKKDVYIDIKPEVIESNV--IYEKLGINREKLIIIGIMLGTDYNPDGIKGV 251
Query: 243 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 302
G +TALK+++ + E IL+++ + + Y E F PEV + I+W
Sbjct: 252 GIKTALKIVKSYEKTEEILKSLPQTQVD------YYEIFNYFMNPEVT---DNYTIQWKE 302
Query: 303 PDEEGLINFLVSENGFNSDRVTKAIEKIKAA--KNKSSQGR-LESFFK 347
P E + LV E+ FN RV AIE+++ + +N SQ + L+ +FK
Sbjct: 303 PSVEKIKEILVEEHDFNEARVENAIERLQKSFKENVKSQTKGLDFWFK 350
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 209/353 (59%), Gaps = 20/353 (5%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
LA+ + KE F G+KI+IDA ++YQFL + + L + G VTSHL G+F
Sbjct: 3 LAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN--KEDIEKF 127
RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A G+ +++K+
Sbjct: 63 YRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSELKKY 122
Query: 128 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
++ ++++T + ++ K LLK MG+PVV+APSE EA+ A + G +A AS+D DSL FG
Sbjct: 123 AQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFG 182
Query: 188 APRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
A R +R+L RK+P + E+ +L++L LT +Q ID+ I+ G DY D
Sbjct: 183 AKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPD 242
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I+G G +TA ++I+++GS+E +E E +I ++ +E R LF +P+VV +E L+
Sbjct: 243 GIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLKPQVVEPKENLE 300
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRLESFF 346
+ D +++ LV + FN +RV IE++ + AK S Q L+ +F
Sbjct: 301 L--VDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGLDQWF 351
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 195/333 (58%), Gaps = 22/333 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ + ID ++YQFL + + L + G +TSHL G+F RTI +LE G+KP YVFD
Sbjct: 25 GKIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFD 84
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP++K +E+ KR R DA+ EA+ G+ E +++ + K+T + D K+LL
Sbjct: 85 GKPPEIKAKEIEKRRKIREDASKKYEEALRKGDIEAARRYAMMSAKLTDEMVQDAKKLLD 144
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P ++AP+E EAQ A + G +A AS+D DSL FG+PR +R+L RK+P
Sbjct: 145 AMGIPWIQAPAEGEAQAAYIVSKGDAWASASQDYDSLLFGSPRLIRNLTISGKRKLPRKN 204
Query: 208 FEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
+ K+LE+L LT +Q I + IL G DY D ++GIG + AL+L++ + ++
Sbjct: 205 VYIEIKPEIIELKKLLEKLGLTREQLIYVAILIGTDYNPDGVKGIGPKKALQLVKAYKTL 264
Query: 258 ETILENINRERYQI-PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
+ IL+ I + + I PE + F P V TD +++W APDE + LV E+
Sbjct: 265 DKILKIIPKTEFPIEPE-----KIVEYFLNPPVSTD---YKLEWRAPDESKIREILVEEH 316
Query: 317 GFNSDRVTKAIEK-IKAAKN--KSSQGRLESFF 346
FN +RV A+E+ +KA + KS Q LE++F
Sbjct: 317 DFNPERVKNAVERLVKAYREHIKSKQLGLEAWF 349
>gi|11497880|ref|NP_069102.1| flap endonuclease-1 [Archaeoglobus fulgidus DSM 4304]
gi|28380012|sp|O29975.1|FEN_ARCFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|42543625|pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543626|pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543629|pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|2650376|gb|AAB90967.1| DNA repair protein RAD2 (rad2) [Archaeoglobus fulgidus DSM 4304]
Length = 336
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 191/337 (56%), Gaps = 21/337 (6%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
+E + E + G+KIA+DA ++YQF+ ++ + L + G +TSHL G+ R ++E
Sbjct: 12 EEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEV 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G++P++VFDG+PP+ KK E+ +R +RA+A + A++AG+K D +K+++ +V +
Sbjct: 72 GIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDK-DAKKYAQAAGRVDEYI 130
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
D K LL MG+P V+APSE EAQ A + G V S+D DSL FG+PR R+L
Sbjct: 131 VDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAIT 190
Query: 199 SSRKIPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 249
RK+P V L+ L LT +Q ID+ IL G DY + ++G+G + AL
Sbjct: 191 GKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALN 250
Query: 250 LIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
I+ +G I L+ + + +E R F P V D +I++ PD E I
Sbjct: 251 YIKTYGDIFRALKALKVNIDHV------EEIRNFFLNPPVTDD---YRIEFREPDFEKAI 301
Query: 310 NFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
FL E+ F+ +RV KA+EK+KA KS+Q LE +F
Sbjct: 302 EFLCEEHDFSRERVEKALEKLKAL--KSTQATLERWF 336
>gi|304313993|ref|YP_003849140.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
gi|302587452|gb|ADL57827.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
Length = 328
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 198/331 (59%), Gaps = 13/331 (3%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S ++ + + GR +A+DA+ SIYQFL + R GT ++ +E G VTSHL G+ RT +
Sbjct: 10 SAEKIRLDDLRGRTVAVDAANSIYQFLSSIRQRDGTPLMDSE-GRVTSHLSGILYRTAAV 68
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
+E ++ YVFDG+ LK + + +R R + + A+E G+ E K++ R+ +++
Sbjct: 69 MERDIRMAYVFDGKSHHLKGETVTRRIETRKKSEVEWRRALEEGDIERARKYAVRSSRMS 128
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + KRLL+L+G+P V+AP E EAQ + + + G +AVAS+D D L FGAPR +R+L
Sbjct: 129 QDIVESSKRLLELLGIPYVQAPGEGEAQASFIVRRGDAWAVASQDYDCLLFGAPRVVRNL 188
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
S + E+ L L++T +Q +DL +L G D+ D I+GIG + LKLI++ G
Sbjct: 189 T-LSGKLEEPEIIELESALRNLSITHEQLVDLALLVGTDFNDGIKGIGARRGLKLIKEKG 247
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +++E I+ + PE R +F EP+V D E ++W PD +G+I+FL E
Sbjct: 248 DVFSVIEEIDGDIGGDPE-----VLRGIFLEPDVTGDYE---LRWRKPDRDGVIDFLCGE 299
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+GF+ +RV A++KI+ A +Q LE +F
Sbjct: 300 HGFSEERVMAALKKIEGA--SFTQKSLEDWF 328
>gi|284162570|ref|YP_003401193.1| XPG I domain-containing protein [Archaeoglobus profundus DSM 5631]
gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
Length = 335
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 195/339 (57%), Gaps = 26/339 (7%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
+E + E + G+KIAIDA ++YQFL + + L + G +TSHL G+ R ++E
Sbjct: 12 EEVEIEYFSGKKIAIDAFNTLYQFLATIRQPDGTPLMDSKGRITSHLSGILYRVSNMVEV 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KPI+VFDG+PP+ KK+E+ +R R +A A++ + K++++ V+V +
Sbjct: 72 GIKPIFVFDGEPPEFKKKEIERRRKIREEAEIKWKTALDIA---EARKYAQQAVRVDEYI 128
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+ K+LL LMG+P+V+APSE EAQ A + + G S+D DSL FG+PR R+L
Sbjct: 129 IESSKKLLNLMGIPIVQAPSEGEAQAAYIVRKGDADYTGSQDYDSLLFGSPRLARNLAIT 188
Query: 199 SSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P V++ E L++L +T +Q ID+ +L G DY + + GIG + A
Sbjct: 189 GRRKLPGKNVYTEVKPEVIDLEYN--LKKLGITREQLIDIALLVGTDYNEGVEGIGVKKA 246
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
K ++ +G I +L + ++ + P +E R F P V D E IK+ P+ +G
Sbjct: 247 YKYVKAYGDIFKVLRVL-----KVKVEEPIEEIRNFFLNPPVTDDYE---IKFREPNVDG 298
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+I FL E+ F+ +RV KA+EK++A KS Q L+ +F
Sbjct: 299 IIEFLCEEHDFSRERVEKAVEKLRAI--KSDQLTLDRWF 335
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 177/312 (56%), Gaps = 37/312 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L L+ NA ++ + Y G+ IA+D S+ + QF R T L
Sbjct: 1 MGITKLADLIRSNARDAVSYKDISDYTGKAIALDTSIVVNQF-----RAATPSL------ 49
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
S L G+F R + LE +KP++VFDG+PP K+ L KR + + N
Sbjct: 50 --SPLIGVFFRALTFLEHDIKPVFVFDGRPPGEKRAVLEKRAE---------SAGWRSPN 98
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ S R DC +LLKL+GVPV++AP +AEA CA L K G V AVASED
Sbjct: 99 RKGTASSSTR----------DCLQLLKLIGVPVIQAPGDAEALCAWLVKEGTVDAVASED 148
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FGA +R L S + V+E+ ++K+LE L + +F+DLCIL GCDYC+ I
Sbjct: 149 MDTLPFGASILIRQLN--SKKDGEVIEYSLSKLLERLQINHQEFVDLCILLGCDYCEKIC 206
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
G+G + AL LI++H +IE ++ ++NR+ + +P W Y+EAR++F + E ++ W
Sbjct: 207 GLGPKRALTLIQKHRTIENVILHVNRKTHPVPLFWKYKEARKIFLD---APRTEPAELTW 263
Query: 301 SAPDEEGLINFL 312
+ PDEE L+ FL
Sbjct: 264 TEPDEEALVEFL 275
>gi|296242726|ref|YP_003650213.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
gi|296095310|gb|ADG91261.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
Length = 353
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 204/350 (58%), Gaps = 20/350 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L L+ D+A ++ + G+ IAIDA ++YQFL + + L + G
Sbjct: 1 MGV-NLKDLIPDDAKIVIENMRVLK--GKVIAIDAYNALYQFLAAIRQPDGTPLMDSQGR 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+F RTI L+E G+K +YVFDG+PP+LK +EL +R + + ++ AVEAG+
Sbjct: 58 ITSHLSGLFYRTINLVEEGLKTVYVFDGKPPELKARELERRRALKEESARKYEAAVEAGD 117
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E +++ K+T + + KRLL +GVP V+AP+E EAQ A L K G YA AS+D
Sbjct: 118 LEAARRYAMMASKLTDEMVKEAKRLLDALGVPWVQAPAEGEAQAAYLAKKGDAYASASQD 177
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILS 231
DSL FG+PR +R+L RK+P E E+ +L +L+LT++ ID+ IL
Sbjct: 178 YDSLLFGSPRLIRNLTISGRRKLPRREEYVEVKPEMIELNTLLLKLSLTLENLIDVGILV 237
Query: 232 GCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
G DY + GIG + A +L++ +GSIE I + + + +++ E ++ F +P V
Sbjct: 238 GTDYNPEGFEGIGVKKAYQLVKTYGSIEKIPKALLKSSFEV----DVLEIKKYFLQPPVT 293
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 340
+ +I+W PDE+ + LV+E+ F+ DRV A+E+ A ++ +G
Sbjct: 294 ---DSYKIEWREPDEKSVFEILVNEHDFSEDRVRNALERFTKAYKENIKG 340
>gi|386876195|ref|ZP_10118324.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
gi|386805976|gb|EIJ65466.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
Length = 340
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 189/334 (56%), Gaps = 19/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
E++ + +AIDA +IYQFL + L++ G +TSHL G+ R + L G+KP
Sbjct: 16 LEAFSTKVVAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSIGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +AV AGN ED K++++T + +
Sbjct: 76 VYVFDGKPPSLKTAEIERRKQIKKDATIKYEKAVAAGNMEDARKYAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K LL G+P +EAPSE EA A L ++GQ YA AS+D DS+ GA R +R+ + RK
Sbjct: 136 KELLTYFGIPYIEAPSEGEATAAHLTQTGQAYASASQDFDSILCGAKRLIRNFTNSGRRK 195
Query: 203 IP--------VME-FEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRGIGGQTALKLIR 252
IP V E E K L L +T ++ ID+ IL G D+ S IG +TA+KLI+
Sbjct: 196 IPNKNTYIDIVPEIIETQKTLNALGITREELIDVGILIGTDFNPSGFERIGPKTAMKLIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
QH LE+I + + Q+ E +++ R++F PEV +E I +S D E + N+L
Sbjct: 256 QHSR----LEDIPQIQEQLQE-IDFEKIRQIFLNPEVADVDE---IIFSEVDYEKITNYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
V E F+ DR+ + ++K A K SQ L+ +F
Sbjct: 308 VKERSFSEDRIQSTLNRLKKALEKKSQN-LDQWF 340
>gi|393795424|ref|ZP_10378788.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 339
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 189/334 (56%), Gaps = 20/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
E++ + IAIDA +IYQFL + L++ G +TSHL G+ R I L G+KP
Sbjct: 16 LEAFSSKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +A+ AGN ED KF+++T + +
Sbjct: 76 VYVFDGKPPSLKTAEIERRKQIKKDATVKYEKAIAAGNMEDARKFAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K++L G+P ++APSE EA A L +GQ YA AS+D DS+ GA R +R+ + RK
Sbjct: 136 KQILTYFGIPYIDAPSEGEAMAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRRK 195
Query: 203 IPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP E K L+ L +T +Q +D+ IL G D+ + IG +TALK+I+
Sbjct: 196 IPNRNTYVEIEPEIIETQKTLDALGVTREQLVDIGILIGTDFNPNGFDRIGPKTALKMIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
QH + LE+I + + Q+ E YQ+ R++F EP V +E I + D EG+ N+L
Sbjct: 256 QH----SCLEDIPQIQEQLQE-IDYQQIRKIFLEPIVAEVDE---IVFGQVDYEGMTNYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
E F+ DR+ ++ ++K A K SQ L+ +F
Sbjct: 308 -KERSFSEDRIQSSLNRLKKALEKKSQN-LDQWF 339
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 196/345 (56%), Gaps = 19/345 (5%)
Query: 15 PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIR 74
P++ +E + + G +A+DA +YQFL + + L + G VTSHL G+F RTI
Sbjct: 11 PEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTIN 70
Query: 75 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 134
L+E G+KP+YVFDG+PP++K +E+ +R ++A+A AVEAG E+ K++ ++
Sbjct: 71 LVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARL 130
Query: 135 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 194
T ++ K LL MG+P V+AP+E EAQ A + + G +A S+D DSL FG+PR +R+
Sbjct: 131 TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRN 190
Query: 195 LMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGG 244
L RK+P + E+ +L +L +T +Q I + IL G DY +RG G
Sbjct: 191 LAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGP 250
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+TAL+L++ G +L ++ R Y D+ ++ F P V D +I++ PD
Sbjct: 251 KTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEYFLNPPVTDD---YKIEFRKPD 304
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQGRLESFF 346
++ + LV + FN +RV +A+E++ A K + Q RL+ +F
Sbjct: 305 QDKVREILVERHDFNPERVERALERLGKAYREKLRGRQSRLDMWF 349
>gi|336477791|ref|YP_004616932.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
gi|335931172|gb|AEH61713.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
Length = 337
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 192/341 (56%), Gaps = 25/341 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFL-IVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S +E + S R +A+DA ++YQFL I+ R GT ++ + G VTSHL G+ R L
Sbjct: 10 SRREIELSSLSSRVVAVDAHNTLYQFLSIIRQRDGTPLM-DSGGMVTSHLSGILYRFTNL 68
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
+E G++P++VFDG PPD K + L KR R A EA E G +++ K+++ +VK+
Sbjct: 69 IEEGIRPVFVFDGTPPDFKSKTLDKRRKVRETAHSRWDEAREKGLEKEAYKYAQASVKLD 128
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ K LL +MG+PVV+AP E EAQ A + KSG VAS+D DSL FGAP +R++
Sbjct: 129 SYVIESSKTLLSIMGIPVVQAPCEGEAQAAHMVKSGDANYVASQDYDSLLFGAPFVIRNI 188
Query: 196 MDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 244
RK+P V++ E + L ++ +T Q +D+ + G DY + + IG
Sbjct: 189 AITGKRKLPGKDAYVDVKPEVIDLEHS--LGQMGITHPQLVDIALCVGTDYNNGLENIGQ 246
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+ AL+L+++HG IE++L + +E + + R F P V D + I W PD
Sbjct: 247 KRALELVKKHGDIESVLRKLGKEIDDL------ESIRDFFLNPPVTDDYD---IIWQKPD 297
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ LI+FL +E+ F+ +RV KA E+I A S Q L+ F
Sbjct: 298 HDRLIDFLCNEHDFSRERVAKAWERIIAVSG-SQQKTLDQF 337
>gi|407462243|ref|YP_006773560.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045865|gb|AFS80618.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
Length = 340
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 189/334 (56%), Gaps = 19/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
ES+ + IAIDA +IYQFL + L++ G +TSHL G+ R + L G+KP
Sbjct: 16 LESFSNKVIAIDAYNAIYQFLASIRGPDGLQLSDAEGRITSHLSGLLYRNVNFLSLGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +A+ GN ED K++++T + +
Sbjct: 76 VYVFDGKPPSLKTAEIERRKQIKMDATIKYEKAIADGNMEDARKYAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K LL G+P +EAPSE EA A L +GQ YA AS+D DS+ GA R +R+ + RK
Sbjct: 136 KHLLACFGIPYIEAPSEGEATAAHLTNTGQAYASASQDFDSILCGAKRLVRNFTNSGRRK 195
Query: 203 IP--------VME-FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP V E E K L+ L LT ++ ID+ IL G D+ + IG +TALK+I+
Sbjct: 196 IPNKNTYIDIVPEIIETQKTLDSLELTREELIDVGILIGTDFNPNGFERIGPKTALKMIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
QH LE+I + + Q+ E +Q+ R++F PEV +E I + D +G+ ++L
Sbjct: 256 QHSR----LEDIPQIQEQLQE-IDFQQIRKIFLNPEVADVKE---IIFKDVDYKGITDYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
V E F+ DRV+ + ++K A + SQ L+ +F
Sbjct: 308 VKERSFSEDRVSSTLNRLKKALERKSQN-LDQWF 340
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 195/337 (57%), Gaps = 21/337 (6%)
Query: 12 DNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTR 71
D PK KE + + +AID+ +YQFL + L N GE+TS G+F +
Sbjct: 7 DLIPK--KEISLKDLKNKTVAIDSMNILYQFLSSIRLRDGSPLRNSKGEITSTYNGIFYK 64
Query: 72 TIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 131
I +LE + PI+VFDG+PP+LK + +R + A ++ A E GN ED++K++KR
Sbjct: 65 NIYMLENDITPIWVFDGKPPELKHKTREERKKVKEKAMEEYISAKEEGNLEDMQKYAKRI 124
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+ + ++ KRLL LMG+P + APSE EAQC+ + K G VYAV S+D D+L +GAPR
Sbjct: 125 NYLEPKVVENSKRLLNLMGIPFINAPSEGEAQCSYMAKKGDVYAVVSQDYDALLYGAPRT 184
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKL 250
+R++ ++ P+ E+ ++L LN+T+D ID+ IL G DY ++GIG + AL +
Sbjct: 185 VRNI---TASNKPLELIELDEVLGALNITLDNLIDMAILIGTDYNIGGVKGIGPKKALDI 241
Query: 251 IRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310
++ + E I N E Y++ + +FK P+ VTDE L K AP+ E L
Sbjct: 242 VKNNKMGEYIK---NIENYEV--------IKNIFKHPK-VTDEYSL--KLGAPNIEELRK 287
Query: 311 FLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
FL+ EN F+ +R+ +++K+ K K SQ +ES+F
Sbjct: 288 FLIDENNFSENRILPSLKKLEKIVNKKKSQTTIESWF 324
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 195/339 (57%), Gaps = 25/339 (7%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
+E + E + G+ +AIDA +IYQFL + + L + G +TSHL G+ R L+E
Sbjct: 12 EEVELEFFSGKYVAIDAFNAIYQFLSTIRQPDGTPLKDSQGRITSHLSGLLYRNANLIEI 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
G+KPIYVFDG+PP+ KK+EL +R + +A + A+EAG ED +K+++ T KV +
Sbjct: 72 GIKPIYVFDGEPPEFKKKELERRAELKKEAEEKWKIALEAG--EDAKKYAQATAKVDEYI 129
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+ K LL+ +G+P V+APSE EAQ A + + G S+D DSL FG+P+ R+L
Sbjct: 130 VESSKTLLEYLGIPYVQAPSEGEAQAAYMVRKGDADYTGSQDYDSLLFGSPKLARNLTVT 189
Query: 199 SSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P +++ E L++L +T +Q ID+ IL G DY + ++GIG + A
Sbjct: 190 GKRKLPGKNVYVEIKPEIIDLEAN--LKKLGITREQLIDVAILVGTDYNEGVKGIGAKKA 247
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
LK ++ +G ++ +L+ + E + E R F P D E IK+ P ++
Sbjct: 248 LKYVKTYGDVKKVLKVLRVEIEHL------DEIREFFLNPPTTDDYE---IKFRKPKKDK 298
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+I FL E+ F+ +RV KA+E+I+ + SSQ L+ +F
Sbjct: 299 VIEFLCEEHDFSRERVEKAVERIEENIS-SSQITLDRWF 336
>gi|329764928|ref|ZP_08256517.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138597|gb|EGG42844.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 339
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 188/334 (56%), Gaps = 20/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
E++ + IAIDA +IYQFL + L++ G +TSHL G+ R I L G+KP
Sbjct: 16 LEAFSSKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +A+ AGN ED KF+++T + +
Sbjct: 76 VYVFDGKPPSLKTAEIERRKQIKKDATVKYEKAIAAGNMEDARKFAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K++L G+P ++APSE EA A L +GQ YA AS+D DS+ GA R +R+ + RK
Sbjct: 136 KQILTYFGIPYIDAPSEGEAMAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRRK 195
Query: 203 IPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP E K L+ L +T +Q +D+ IL G D+ + IG +TALK+I+
Sbjct: 196 IPNRNTYVEIEPEIIETQKTLDALGVTREQLVDIGILIGTDFNPNGFDRIGPKTALKMIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
QH LE+I + + Q+ E YQ+ R++F EP V +E I + D EG+ N+L
Sbjct: 256 QHSR----LEDIPQIQEQLLE-IDYQQIRKIFLEPIVAEVDE---IVFGQVDYEGMTNYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
E F+ DR+ ++ ++K A K SQ L+ +F
Sbjct: 308 -KERSFSEDRIQSSLNRLKKALEKKSQN-LDQWF 339
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 194/356 (54%), Gaps = 24/356 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+K + D P EQ + G+ IA DA +YQFL + L + G
Sbjct: 1 MGVK-----IGDIIPGEAVEQTSLKRLSGKAIAFDAYNILYQFLATIRGPDGRPLMDRRG 55
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
VTSHL G+F RTI L+ G+ P+YVFDG+PP+ K + + KR R +A A+ G
Sbjct: 56 RVTSHLSGLFFRTINFLQEGLLPVYVFDGRPPEEKYRTIEKRAVAREEAGKLYEAALAEG 115
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E ++++R + K + LLK MGVP V APSE EAQ A + G VYA S+
Sbjct: 116 DLEAARRYAQRAASLEKYMVESAADLLKAMGVPYVMAPSEGEAQAAYMAAKGSVYAAGSQ 175
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIP--------VME-FEVAKILEELNLTMDQFIDLCIL 230
DMDSL FG+PR +R+L RK+P V E + K+L L LT +Q ID+ +L
Sbjct: 176 DMDSLLFGSPRLVRNLSIVGRRKLPGRKEYVEVVPEIIYLDKLLASLGLTREQLIDIGLL 235
Query: 231 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
G DY +RG+G +TALK+++++GS+E +E E ++ Q R+LF +P V
Sbjct: 236 VGTDYSPQVRGVGPKTALKIVKEYGSLEKAVETGAVE-----VEFDVQTVRQLFLKPRVT 290
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
D + W P EE ++ LV E F+ +RV KA+ +++ +K S L++FF
Sbjct: 291 DD---YTLNWREPSEEMVMELLVEEFDFSRERVGKALAELRQTLSKRSSS-LDAFF 342
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 195/345 (56%), Gaps = 19/345 (5%)
Query: 15 PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIR 74
P++ +E + + G +A+DA +YQFL + + L + G VTSHL G+F RTI
Sbjct: 62 PEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTIN 121
Query: 75 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 134
L+E G+KP+YVFDG+PP++K +E+ +R ++A+A AVEAG E+ K++ ++
Sbjct: 122 LVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRAVEAGEVEEARKYAMMAARL 181
Query: 135 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 194
T ++ K LL MG+P V+AP+E EAQ A + + G +A S+D DSL FG+PR +R+
Sbjct: 182 TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRN 241
Query: 195 LMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGG 244
L RK+P + E+ +L +L +T +Q I + IL G DY +RG G
Sbjct: 242 LAITGRRKLPGRDQYVEIKPEIIELETLLSKLGITREQLIAVGILLGTDYNPGGVRGYGP 301
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+TAL+L++ G +L ++ R Y D+ ++ F P V D +I++ PD
Sbjct: 302 KTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEYFLNPPVTDD---YKIEFRKPD 355
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQGRLESFF 346
+ + LV + FN +RV +A+E++ A K + Q RL+ +F
Sbjct: 356 RDKVREILVERHDFNPERVERALERLAKAYREKLRGRQSRLDMWF 400
>gi|134045325|ref|YP_001096811.1| flap endonuclease-1 [Methanococcus maripaludis C5]
gi|132662950|gb|ABO34596.1| flap endonuclease 1 [Methanococcus maripaludis C5]
Length = 324
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 194/348 (55%), Gaps = 26/348 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ D PK+ KF + +AIDA IYQFL + L N+ GE
Sbjct: 1 MGVQ-----FGDLIPKTEISLKFLK--NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGE 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TS G+F +TI +LE M PI+VFDG+ DLK++ +R R A D EA E N
Sbjct: 54 ITSTYNGIFYKTIYMLENEMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYLEAKEQNN 113
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++K++KR + K+ D+ K+LL+LMG+P + APSE EAQCA L KS + V S+D
Sbjct: 114 LEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDAFCVISQD 173
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSI 239
DS+ +GA ++++ S++ I ++E E K L ELN+++DQ ID+ IL G DY +
Sbjct: 174 YDSILYGAENVVKNIT-SSNKDIELIELE--KTLSELNVSLDQLIDVAILIGTDYNPGGL 230
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+G G + A+ +++ G +E + I Y E R++F EP V + + K
Sbjct: 231 KGFGPKKAIDTVKK-GKMENYISEIEN----------YSEIRKIFDEPNVTS---EYDTK 276
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
P +E L FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 277 LKTPKKEELAEFLIEENDFSKDRILPNIEKISNLLGNKKSQKSLEAWF 324
>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
Length = 300
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 181/305 (59%), Gaps = 20/305 (6%)
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
N G+VTSHL G+F RT+ LLE G+ PIYVFDG+PP+LK QEL R + +A L +A
Sbjct: 2 NRQGKVTSHLNGVFYRTVNLLEEGIIPIYVFDGKPPELKAQELENRRKMKEEAEKKLEKA 61
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
E+G E++ K+S+ T ++T + K LL+ MGVP V+APSE EA+ A L G YA
Sbjct: 62 KESGKVEEMRKYSQMTSRLTTDMAKESKELLEYMGVPTVQAPSEGEAEAAYLNAKGITYA 121
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFID 226
AS+D DSL FGA + +R+L RK+P + E A +L++L +T +Q ID
Sbjct: 122 SASQDYDSLLFGAEKLIRNLTISGKRKLPNKDVYVEVKPELIETASLLKKLEITREQLID 181
Query: 227 LCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 285
+ IL G DY D +RGIG + A KLI+ + I ENI++ P + Y++ R LF
Sbjct: 182 IAILVGTDYNPDGVRGIGPKKAYKLIKTYKKI----ENIDKRELPEPIYFDYEKIRELFL 237
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA----KNKSSQGR 341
+P+V L++ S PD +I FLV+EN FN +RV IE+++ A K+ Q
Sbjct: 238 KPQVTLPSTPLEL--SDPDPSKIIQFLVNENDFNEERVRGTIERLQKAMKEIKDIKRQTG 295
Query: 342 LESFF 346
L+ +F
Sbjct: 296 LDQWF 300
>gi|408404695|ref|YP_006862678.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365291|gb|AFU59021.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 341
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 196/330 (59%), Gaps = 21/330 (6%)
Query: 28 GRKIAIDASMSIYQFL-IVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVF 86
G+ +AIDA +IYQFL I+ G TG E L N GE+TSHL G+F R LL +K +YVF
Sbjct: 21 GKVVAIDAYNTIYQFLSIIRGPTG-EPLANSKGEITSHLSGLFYRNANLLGDNIKLVYVF 79
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DG+ +LK E+ +R + +AT+ AVE G ED K+ RT +T + ++ K+LL
Sbjct: 80 DGKANELKMAEIQRRSQLKKEATEKYQLAVEEGRIEDARKYGIRTAVLTDKMVEESKKLL 139
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
+G+P ++APS+ EA A L + +A AS+D DS+ FGA + +R+L RK+P
Sbjct: 140 SYLGIPYIQAPSDGEAAAAYLTRRELAFAAASQDYDSILFGAKKLVRNLAISGKRKVPNR 199
Query: 207 E---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGS 256
FE K+L+E+ LT +Q ID+ IL G D+ GIG +TALKLI+++G
Sbjct: 200 NVYIDVEPEIFEHDKVLQEIGLTHEQLIDVGILIGTDFNPGGFPGIGPKTALKLIKENGK 259
Query: 257 IETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
LEN+ + ++ +P+ PYQE R +F +PEV + +I + + E +++FL +
Sbjct: 260 ----LENVEKIKHLLPK-MPYQEIRDIFLKPEVPKVD---RIDFGEVNREKVLDFLCVDK 311
Query: 317 GFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F++DRV+ ++K++ + SQ LE +F
Sbjct: 312 SFSADRVSSTLDKLQKSIANRSQS-LEQWF 340
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 206/359 (57%), Gaps = 23/359 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ + ++ D A + + + + Y IA+D +YQFL + + L + G
Sbjct: 1 MGV-NIRDIIPDQARREVDLKALKGYV---IALDGYNMLYQFLSAIRQPDGTPLKDSQGR 56
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
VTSHL G+F RTI L+E G+KP+YVFDG+PP++K++E+ +R +++ +A + A+A E+G+
Sbjct: 57 VTSHLSGLFYRTINLVEEGLKPVYVFDGKPPEMKRKEIEERVARKKEAAEKYAKAKESGS 116
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+ K+++ T +++ + KRLL MG+P V+AP++ EAQ A L + G +A S+D
Sbjct: 117 IEEARKYAQATSELSSDMVSEAKRLLDYMGIPWVQAPADGEAQAAHLAQKGDAWAAGSQD 176
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILS 231
DSL FGAPR +R+L RK+P + ++ +L+ L +T +Q I L IL
Sbjct: 177 YDSLLFGAPRLVRNLAITGKRKLPNKDEYVEVKPEIIDLNAMLKALGITREQLILLGILV 236
Query: 232 GCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 290
G D+ D I+G G +TAL ++ + LE+I + Q+P D + F +P V
Sbjct: 237 GTDFDPDGIKGYGPKTALNFVKGVKDVTKALESI---KSQLPGDVDPFKIFDYFAKPPVS 293
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKN--KSSQGRLESFF 346
+D +I + PD E + LV E+ F+ DRV KA E++ KA K + Q RL+ +F
Sbjct: 294 SD---YRILFKEPDVEKIKELLVREHDFSEDRVVKAAERLAKAFKENLRGKQSRLDMWF 349
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 22/304 (7%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSE 64
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G E++ K+S+ ++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAAS 124
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDL 227
+D D++ FGA R +R+L RK+P ++E E+ +L++L +T +Q ID+
Sbjct: 125 QDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITREQLIDI 182
Query: 228 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
IL G DY D IRGIG + ALK+I+++G IE +E + I ++ E R LF
Sbjct: 183 GILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRGLFLN 240
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRL 342
P+VV EE L + + P+ E +IN LV E+ F+ +RV IE+ IK AK S Q L
Sbjct: 241 PQVVKPEEALDL--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGL 298
Query: 343 ESFF 346
+ +F
Sbjct: 299 DRWF 302
>gi|340344625|ref|ZP_08667757.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519766|gb|EGP93489.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 341
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 189/334 (56%), Gaps = 19/334 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
ES+ + IAIDA +IYQFL + L++ G +TSHL G+ R I L G+KP
Sbjct: 16 LESFSSKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNINFLSLGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + DAT +A+ GN ED KF+++T + +
Sbjct: 76 VYVFDGKPPSLKTAEIERRKQIKKDATIKYEKAIAEGNLEDARKFAQQTTSMKDGMVKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K++L G+P ++A SE EA A L +GQ YA AS+D DS+ GA R +R+ + RK
Sbjct: 136 KQILSYFGIPYIDAASEGEATAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRRK 195
Query: 203 IPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP E K L+ L +T +Q +D+ IL G D+ + IG +TALK+I+
Sbjct: 196 IPNRNTYVEIEPEIIETQKTLDSLEITREQIVDIGILIGTDFNPNGFDRIGPKTALKMIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
Q+ +E I + +E+ Q E Y++ R++F EP +VTD + +I + D EG+ N+L
Sbjct: 256 QYSRLEDIPQ--IQEQLQTIE---YEKIRKIFLEP-IVTDVD--EIVFGKVDYEGMTNYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
V E F+ DR+ ++ +++ A K S L+ +F
Sbjct: 308 VKERSFSEDRIQSSLNRLRKALEKKSHN-LDQWF 340
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 196/333 (58%), Gaps = 20/333 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
GR IA DA ++YQFL + +T L + G +TSHL G+F RTI LE G+KPIYVFD
Sbjct: 25 GRIIAFDAYNALYQFLAAIRQTDGTPLMDSKGRITSHLSGLFYRTINFLENGIKPIYVFD 84
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP++K++EL +R ++ A +A GN E+ K+ + + +T + + K LL
Sbjct: 85 GKPPEIKRKELEQRRIRKERAAKMAEKAYSEGNIEEASKYVVQAIFLTDEMVKEAKELLD 144
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+PV++A E EA+ A + K G +A AS+D DSL FGAPR +R+L RK+P +
Sbjct: 145 AMGIPVIQAAEEGEAEAAYIAKKGLAWATASQDYDSLLFGAPRLVRNLTITGKRKLPGKD 204
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E+ K+L+ L +T +Q ID+ IL G DY D + GIG +TA +LI+ +GS+
Sbjct: 205 IYIEIKPEIIELEKLLKTLGITHEQLIDIAILIGTDYNPDGVEGIGPKTAYQLIKAYGSL 264
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E I+++ + I ED + + F P VV E +I+W PD + + LV E+
Sbjct: 265 EKIIKSPHGS--HISED--LIKIKNYFLNPVVVDVE---RIEWKEPDTNRIKDLLVREHD 317
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGR---LESFFK 347
F+ DRV A+++++ A + +GR L+ +FK
Sbjct: 318 FSIDRVENALKRLEKAYREYIKGRPSSLDQWFK 350
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 181/326 (55%), Gaps = 21/326 (6%)
Query: 31 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP 90
+AIDA +++QFL ++ + L N G+VTSHL G+ RT L+E G+KP+++FDG+P
Sbjct: 24 VAIDAFNTLHQFLSIIRQRDGNPLVNSRGKVTSHLSGLLYRTASLIEVGIKPVFIFDGKP 83
Query: 91 PDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMG 150
PDLK + L +R R + + A G+ E K+++ + KV ++ +D K LL +MG
Sbjct: 84 PDLKSETLNRRKEVRESSLEKWENAKVEGDLEAAYKYAQASSKVDQEIVEDSKYLLSIMG 143
Query: 151 VPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV 210
+P ++AP E EAQ A + VAS+D DS FGAP +R+L RK+P V
Sbjct: 144 IPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPTVIRNLAVTGKRKLPGKHVYV 203
Query: 211 AKILEE---------LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
LE L + +Q ID+ I G D+ + +G +TALKLI++HG I +L
Sbjct: 204 DVELELIELEETLGVLGINREQLIDIAICVGTDFNKGLEKVGPKTALKLIKKHGDIHAVL 263
Query: 262 ENINRER-YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 320
RE+ +I E R LF P+V D E IKW PD E LI FL EN F+
Sbjct: 264 ----REKGVEIKE---LDRIRELFTHPDVTDDYE---IKWGKPDSEKLIKFLCKENDFSV 313
Query: 321 DRVTKAIEKIKAAKNKSSQGRLESFF 346
DRV KA+E++K ++ Q L+ +F
Sbjct: 314 DRVKKAVERLKVV-SRGRQQTLDQWF 338
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 186/321 (57%), Gaps = 19/321 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
+ +AIDA IYQFL + L N+ GE+TS G+F +TI +LE M PI+VFD
Sbjct: 21 NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+ DLK++ +R R A D EA E N E+++K++KR + K+ D+ K+LL+
Sbjct: 81 GKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNLEEMQKYAKRANFLDKKIIDNSKKLLE 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
LMG+P ++APSE EAQCA L K+ + V S+D DS+ +GA ++++ S++ I ++E
Sbjct: 141 LMGIPYIDAPSEGEAQCAELVKANDAFCVISQDYDSILYGAENVVKNIT-SSNKDIELIE 199
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINR 266
E K L ELN+++DQ ID+ IL G DY ++G G + A+ +++ ++ I E N
Sbjct: 200 LE--KTLSELNVSLDQLIDVAILIGTDYNPGGLKGFGPKKAIDTVKKGQMVKYISEIEN- 256
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
Y E R++F EP V ++ + L P +E L FL+ EN F+ DRV
Sbjct: 257 ----------YSEIRKIFDEPNVTSEYDTL---LKIPKKEELAEFLIEENDFSKDRVLPN 303
Query: 327 IEKI-KAAKNKSSQGRLESFF 346
IEKI NK SQ LE++F
Sbjct: 304 IEKISNLLGNKKSQKSLEAWF 324
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 184/305 (60%), Gaps = 25/305 (8%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RT+ L+E G+ P+YVFDG+PP+LK +EL R + +A L +A E
Sbjct: 5 GRVTSHLNGVFYRTVNLIEEGVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVKAKEL 64
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G E++ K+S+ + ++TK ++ K LL MGVP+V APSE EA+ A L +A AS
Sbjct: 65 GKLEEMRKYSQMSSRLTKGMAEESKELLSRMGVPIVNAPSEGEAEAAYLNYKNITFAAAS 124
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 229
+D DSL FGA R +R+L RK+P + E+ ++L +L LT +Q ID+ I
Sbjct: 125 QDYDSLLFGAKRLIRNLTITGKRKLPNKDVYVEIKPEMIELDELLRKLGLTREQLIDVAI 184
Query: 230 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQI-PE--DWPYQEARRLFK 285
L G DY D I+GIG +TA KLIR + SIE I +R ++ PE + Y++ R +F
Sbjct: 185 LIGTDYNPDGIKGIGPKTAYKLIRTYKSIEAI------DRRELNPELIYFDYKKIREIFL 238
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGR--- 341
+PEVV E L+++ PD+E + + LV E FN +RV A+ ++ KA + S GR
Sbjct: 239 KPEVVEPSESLELR--DPDKEKVTDMLVGEYDFNEERVKNALARLEKAIREVKSLGRQTG 296
Query: 342 LESFF 346
L+ +F
Sbjct: 297 LDQWF 301
>gi|150402483|ref|YP_001329777.1| flap endonuclease-1 [Methanococcus maripaludis C7]
gi|150033513|gb|ABR65626.1| XPG I [Methanococcus maripaludis C7]
Length = 324
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 194/348 (55%), Gaps = 26/348 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ D PK+ KF + +AIDA IYQFL + L N+ GE
Sbjct: 1 MGVQ-----FGDLIPKTEISLKFLK--NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGE 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TS G+F +TI +LE M PI+VFDG+ DLK++ +R R A D EA E N
Sbjct: 54 ITSTYNGIFYKTIYMLENEMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYLEAKEQNN 113
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
E+++K++KR + K+ D+ K+LL+LMG+P + APSE EAQCA L KS + V S+D
Sbjct: 114 LEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDAFCVISQD 173
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSI 239
DS+ +GA ++++ S++ I ++E + K L ELN++++Q ID+ IL G DY +
Sbjct: 174 YDSILYGAENVVKNIT-SSNKDIELIELQ--KTLSELNVSLNQLIDVAILIGTDYNPGGL 230
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
+G G + A+ +++ G +E + I Y E R++F EP V + + K
Sbjct: 231 KGFGPKKAIDTVKK-GQMEKYISEIEN----------YSEIRKIFDEPNVTS---EYDTK 276
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
P +E L FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 277 LKTPKKEELAEFLIEENDFSKDRILPNIEKISNLLGNKKSQKNLEAWF 324
>gi|422295551|gb|EKU22850.1| flap endonuclease-1 [Nannochloropsis gaditana CCMP526]
Length = 193
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 130/174 (74%), Gaps = 4/174 (2%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MGIKGLTKL+AD AP+++KE K E Y GR +A+DASM+IYQFLI + G LTN
Sbjct: 1 MGIKGLTKLIADEAPEAIKEHKVEHYNGRTVAVDASMAIYQFLIAIRHGSGGAAASQLTN 60
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
EAGEVTSH+QG+F RTIR+L +G+KP++VFDG+PP LK EL KR KR A +L +A
Sbjct: 61 EAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELKKAQ 120
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 170
E N E+ ++ SKR V+ K+ + DCK+LL+LMGVP +EAP EAEAQCAAL K+
Sbjct: 121 EEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKA 174
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 186/322 (57%), Gaps = 18/322 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVG-RTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVF 86
+KI IDA IYQFL + R GT L N +GE TS G+F +TI +LE G+ PI+VF
Sbjct: 21 NKKIVIDAMNVIYQFLSSIRLRDGTP-LKNSSGETTSAYNGIFYKTINMLEMGLTPIWVF 79
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DGQ +LK+ +R R A + A + + E ++KF+KR + +CKRLL
Sbjct: 80 DGQAHELKEITREERRKTRQKALSEYLVAKKEEDTEKMQKFAKRMNYLDTNMVLNCKRLL 139
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
LMGVP + + SE EAQCA + K G +AV S+D DSL +GA R +R++ SS++ +
Sbjct: 140 DLMGVPHLTSGSEGEAQCAEIVKKGDAFAVVSQDYDSLLYGADRVIRNITSSSSKEFEYI 199
Query: 207 EFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENIN 265
E + +L+EL++ Q ID+ IL G DY ++G+G + AL +++ N
Sbjct: 200 ELK--DVLDELDINRSQLIDMSILIGTDYNPKGVKGLGPKKALDVVK----------NNQ 247
Query: 266 RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 325
E+Y PE Y E R++F EP V+++ ++ +K PD G+ FLV EN F+ DRV
Sbjct: 248 MEKYA-PEIENYSEIRKIFDEP-VLSEYKKSDLKLKRPDLAGIFKFLVEENDFSEDRVKS 305
Query: 326 AIEKIKA-AKNKSSQGRLESFF 346
+ EK+ K+K SQ LES+F
Sbjct: 306 SSEKLDGLVKSKLSQSSLESWF 327
>gi|45358876|ref|NP_988433.1| flap endonuclease-1 [Methanococcus maripaludis S2]
gi|45047742|emb|CAF30869.1| flap endonuclease [Methanococcus maripaludis S2]
Length = 324
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 189/339 (55%), Gaps = 21/339 (6%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
D PK+ KF + +AIDA IYQFL + L N+ G++TS G+F
Sbjct: 5 FGDLIPKTEISLKFLR--NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITSTYNGIF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
+TI +LE GM PI+VFDG+ +LK++ +R R A D EA E N E+++K++K
Sbjct: 63 YKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSREGALDSYMEAKEQNNLEEMQKYAK 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
R + K+ D+ K+LL+LMG+P V APSE EAQCA L K+ + V S+D DS+ +GA
Sbjct: 123 RANFLDKKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNAFCVISQDYDSILYGAE 182
Query: 190 RFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
++++ S++ I ++E E K L LN++ DQ ID IL G DY ++G G + A+
Sbjct: 183 NVVKNIT-SSNKDIELIELE--KTLSGLNISRDQLIDAAILIGTDYNPGGLKGFGPKKAI 239
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+++ G +E + I Y E R++F EP V TD + I P ++ L
Sbjct: 240 DTVKK-GKMENYISEIEN----------YSEIRKIFDEPNVTTDYD---ITLKTPKKDEL 285
Query: 309 INFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 286 AEFLIEENDFSKDRILPNIEKISNLLGNKKSQKSLEAWF 324
>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
Length = 339
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 188/327 (57%), Gaps = 18/327 (5%)
Query: 29 RKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG 88
R +AID ++YQFL ++ + L + G +TSHL G+ R L EAG+KP++VFDG
Sbjct: 22 RTVAIDGYNTLYQFLSIIRQRDGTPLKDSRGNITSHLSGILYRMTNLFEAGIKPVFVFDG 81
Query: 89 QPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 148
+PPD K +++R R +A EA E G ED+ K+++ + KV +D +LL
Sbjct: 82 KPPDFKADTISQRKKSREEALTKWDEAKEKGLSEDVYKYAQASSKVDALIVEDSMQLLDY 141
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---- 204
MG+P V+APSE EAQ A + G AS+D DSL FGAPR +R+L RK+P
Sbjct: 142 MGIPCVQAPSEGEAQAAYMVNKGDADYSASQDYDSLLFGAPRVIRNLTITGKRKLPGKNV 201
Query: 205 VMEFEVAKI-----LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
++ E I ++ L++ Q I + + G DY + +G +TALKLI+Q+GSI
Sbjct: 202 YIDVEPESIDLMQNIKLLDIDRRQLIGIALCVGTDYNKGLEKVGPKTALKLIKQYGSIHK 261
Query: 260 ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
ILE+ R ++ ++ +A+ F VTD +L KW +P +E +++FL ++ F+
Sbjct: 262 ILEH----RGEVIDEL---DAKIDFFLNPPVTDAYEL--KWKSPQKEKIVDFLCKQHDFS 312
Query: 320 SDRVTKAIEKIKAAKNKSSQGRLESFF 346
+RV KA+++++ A + SQ L+ +F
Sbjct: 313 EERVLKAVDRLEKAGKQQSQQTLDQWF 339
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 198/333 (59%), Gaps = 18/333 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+KI+IDA +IYQFL + + L + G +TSHL G+F RTI ++E+G+ PI+VFD
Sbjct: 3 GKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIESGIIPIFVFD 62
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+ K +E+ +R + +A L +A G +I K+++ V+++ + ++ K+LL
Sbjct: 63 GKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKYAQAAVRLSNEMVEESKKLLD 122
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+PVV+AP E EA+ A + +A AS+D DSL FGA R +R++ RK+P +
Sbjct: 123 AMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITISGKRKLPNKD 182
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E+ +L++L + +Q ID+ IL G DY D ++GIG +TAL++I+++ +I
Sbjct: 183 VYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNI 242
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E +E + +I ++ +E R+LF PEV E+L++ + +E +I LV +
Sbjct: 243 ENAIEKGEIQLSKI--NFDIREIRKLFITPEVKKPTERLEL--AECNEREIIELLVKNHD 298
Query: 318 FNSDRVTKAIEK----IKAAKNKSSQGRLESFF 346
FN DRV IE+ IK AK+ Q L+ +F
Sbjct: 299 FNEDRVNNGIERLKKAIKEAKSVEKQTGLDQWF 331
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 198/333 (59%), Gaps = 18/333 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+KI+IDA +IYQFL + + L + G +TSHL G+F RTI ++E+G+ PI+VFD
Sbjct: 21 GKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIESGIIPIFVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP+ K +E+ +R + +A L +A G +I K+++ V+++ + ++ K+LL
Sbjct: 81 GKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKYAQAAVRLSNEMVEESKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+PVV+AP E EA+ A + +A AS+D DSL FGA R +R++ RK+P +
Sbjct: 141 AMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITISGKRKLPNKD 200
Query: 208 ---------FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
E+ +L++L + +Q ID+ IL G DY D ++GIG +TAL++I+++ +I
Sbjct: 201 VYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNI 260
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E +E + +I ++ +E R+LF PEV E+L++ + +E +I LV +
Sbjct: 261 ENAIEKGEIQLSKI--NFDIREIRKLFITPEVKKPTERLEL--AECNEREIIELLVKNHD 316
Query: 318 FNSDRVTKAIEK----IKAAKNKSSQGRLESFF 346
FN DRV IE+ IK AK+ Q L+ +F
Sbjct: 317 FNEDRVNNGIERLKKAIKEAKSVEKQTGLDQWF 349
>gi|383320867|ref|YP_005381708.1| flap endonuclease 1 [Methanocella conradii HZ254]
gi|379322237|gb|AFD01190.1| flap endonuclease 1 [Methanocella conradii HZ254]
Length = 339
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 185/354 (52%), Gaps = 36/354 (10%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
L D APK E K S G+ IAIDA ++YQFL ++ + L +E G+VTSHL G+
Sbjct: 5 LTDLAPKHEIELKELS--GKIIAIDAFNTLYQFLSIIRQPDGTPLVDEKGQVTSHLSGII 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
R L+E G+KP++VFDG+PP LK + + R R A AVE G+ E K+++
Sbjct: 63 YRVTNLIELGIKPVFVFDGKPPLLKAETIKARAEVREAARQMYEAAVEEGSAEAY-KYAQ 121
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
+ Q +D K LL MG+P + APSE EAQ + + G V S+D DSL FGAP
Sbjct: 122 AATSINAQIIEDSKTLLGYMGIPFIVAPSEGEAQASCMVSKGAADYVGSQDYDSLLFGAP 181
Query: 190 RFLRHLMDPSSRKIPVMEF---------EVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
R +R++ RK+P E+ + LE L++T +Q ID+ IL G D+ I
Sbjct: 182 RMVRNVTITGRRKVPRRNIYVDVKPEIVELKETLETLDITREQLIDIGILVGTDFNPGIY 241
Query: 241 GIGGQTALKLIRQH-------GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 293
+G +TALKL+++H G +E +EN Y+E + F P V D
Sbjct: 242 KVGPKTALKLVKKHKNMQEVFGELEQTIEN-------------YEEIKEFFLHPPVTDD- 287
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
I W P+ + +FL E+ F+ DRV K +E++ KA Q L ++F
Sbjct: 288 --YHIAWGRPEPAKIKHFLCDEHSFSQDRVEKVVERLEKAVVETGKQKTLSAWF 339
>gi|385773896|ref|YP_005646463.1| XPG I domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
Length = 302
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNIIGFSWAAAS 124
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 229
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 230 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 288
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 344
VV EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 VVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 345 FF 346
+F
Sbjct: 301 WF 302
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 188/324 (58%), Gaps = 12/324 (3%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
F+ GR I+IDA ++YQFL + + L++ G +TSHL G+ R ++E +KP
Sbjct: 16 FKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSHLSGILYRNSSMIEKDIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
IYVFDG P LK++ + +R R ++ EA+ + ++ K++ R+ K++ +
Sbjct: 76 IYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEARKYAMRSSKLSPYIIESS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+LL +MG+P +EA E EAQ A L ++G +AVAS+D D L FGA R +R+L S+
Sbjct: 136 KKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAINSNLG 195
Query: 203 IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE 262
+ + + ++L+EL++ +Q ID+ IL G D+ + ++G+G +TALKL ++ G +E L
Sbjct: 196 -DLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKK-GELENKLA 253
Query: 263 NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
+ E E R +F V TD +I+W P + +I+FL E+GF+ DR
Sbjct: 254 KLQEESSH-----DISEVREIFLNHNVNTD---YKIRWKKPAKNDIIDFLCEEHGFSQDR 305
Query: 323 VTKAIEKIKAAKNKSSQGRLESFF 346
V+KA +K+K SSQ LE +F
Sbjct: 306 VSKACDKLKNL--NSSQKSLEDWF 327
>gi|340624624|ref|YP_004743077.1| flap endonuclease-1 [Methanococcus maripaludis X1]
gi|339904892|gb|AEK20334.1| flap endonuclease-1 [Methanococcus maripaludis X1]
Length = 324
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 189/339 (55%), Gaps = 21/339 (6%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
D PK+ KF + +AIDA IYQFL + L N+ G++TS G+F
Sbjct: 5 FGDLIPKTEISLKFLR--NKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITSTYNGIF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK 129
+TI +LE GM PI+VFDG+ +LK++ +R R A D EA E N E+++K++K
Sbjct: 63 YKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSREGALDSYMEAKEQNNLEEMQKYAK 122
Query: 130 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
R + ++ D+ K+LL+LMG+P V APSE EAQCA L K+ + V S+D DS+ +GA
Sbjct: 123 RANFLDRKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNAFCVISQDYDSILYGAD 182
Query: 190 RFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTAL 248
++++ S++ I ++E E K L LN++ DQ ID IL G DY ++G G + A+
Sbjct: 183 YVVKNIT-SSNKDIELIELE--KTLSGLNISCDQLIDAAILIGTDYNPGGLKGFGPKKAI 239
Query: 249 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 308
+++ G +E + I Y E R++F EP V TD + I P ++ L
Sbjct: 240 DTVKK-GKMENYISEIEN----------YSEIRKIFDEPNVTTDYD---ITLKTPKKDEL 285
Query: 309 INFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 286 AEFLIEENDFSKDRILPNIEKISNLLGNKKSQKSLEAWF 324
>gi|288559640|ref|YP_003423126.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
gi|288542350|gb|ADC46234.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
Length = 328
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 190/320 (59%), Gaps = 13/320 (4%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
GR +AIDA ++YQFL + + L + G VTSHL G+ RT +++ G+KP+YVFD
Sbjct: 21 GRTVAIDAYNTLYQFLSGIRQRDGSPLMDANGNVTSHLSGILYRTASIVDKGIKPVYVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G + K + + KR + R +A EA AGN E+ K++ R+ +++ + K+LL+
Sbjct: 81 GDVSEYKTKTVEKRRALREEANQKYEEAKAAGNIEEARKYAIRSSRLSPYIIESSKKLLE 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P V+A E EAQ A + K+G +AVAS+D D L FGAPR +R+L S + +E
Sbjct: 141 YMGIPYVQAKGEGEAQGAYMVKNGDAWAVASQDYDCLLFGAPRIIRNL--TLSGGLSNLE 198
Query: 208 F-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 266
+ E+ K+L E++L+ +Q +D+ ++ G D+ + I GIG +T LKLIRQ+ S+E IL
Sbjct: 199 YLELDKVLTEIDLSREQLVDVALMVGTDFNEGIYGIGAKTGLKLIRQN-SLEDILVQKGI 257
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
++ D E R +F +V TD +IK+ + D+E L F+ E+GF+ RV
Sbjct: 258 TDVEVEPD----ELREIFLSHDVNTD---YKIKFKSADKEKLCEFMCEEHGFSETRVLNV 310
Query: 327 IEKIKAAKNKSSQGRLESFF 346
+K+K K S+Q LE +F
Sbjct: 311 ADKLK--KLSSTQKSLEDWF 328
>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
gi|385776538|ref|YP_005649106.1| XPG I domain-containing protein [Sulfolobus islandicus REY15A]
gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
Length = 302
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAAS 124
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 229
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 230 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 288
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 344
VV EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 VVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 345 FF 346
+F
Sbjct: 301 WF 302
>gi|333986804|ref|YP_004519411.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
gi|333824948|gb|AEG17610.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
Length = 328
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 188/324 (58%), Gaps = 11/324 (3%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
F G+ +A+DA+ IYQFL + + L + +TSH G+ RT L+E G+KP
Sbjct: 16 FNDLNGKIVALDAANVIYQFLSSIRQVDGTPLMDHNKNITSHFSGILYRTSSLIEKGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG LKK AKR + + A++ GN E+ K++ R+ +++ +
Sbjct: 76 VYVFDGISSYLKKGTQAKRREVKEKSEKRWKAALDEGNTEEARKYAVRSSRMSSDVIEGS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+LL LMG+P ++A E EAQ + + + G + V S+D D + FGA R +++L + K
Sbjct: 136 KKLLSLMGIPHIQAMGEGEAQASYMVEKGDAWCVGSQDYDCVLFGATRMVKNLT-ITGGK 194
Query: 203 IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE 262
+ E+ K+LE L +T +Q ID+ IL+G D+ + ++GIG + LKL+++HG I IL+
Sbjct: 195 ANLELIELKKVLERLEITREQLIDVAILAGTDFNEGVKGIGAKKGLKLVKEHGDIFNILD 254
Query: 263 NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
++ E P R +F + +V+TD E +KW +PD+ G+I++L ++ F+ DR
Sbjct: 255 HMKIELEVDP-----NILRDMFLKHDVLTDYE---LKWRSPDKSGVIDYLCGDHDFSEDR 306
Query: 323 VTKAIEKIKAAKNKSSQGRLESFF 346
V+ A+EK+K K +Q LE +F
Sbjct: 307 VSSALEKLK--KLDMNQSSLEKWF 328
>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
Length = 338
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 189/331 (57%), Gaps = 21/331 (6%)
Query: 26 YF-GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIY 84
YF GRKIAIDA ++YQF+ ++ + L + G +TSHL G+ R ++E GM+PI+
Sbjct: 18 YFSGRKIAIDAFNTLYQFISIIRQPDGTPLKDSQGRMTSHLSGILYRVSNMIEVGMRPIF 77
Query: 85 VFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKR 144
VFDG+PP K++E+ +R +RA+A + A+E G K + ++ +V + + K+
Sbjct: 78 VFDGEPPVFKQKEIEERKERRAEAEEKWIAAIERGEKYAKKY-AQAAARVDEYIVESSKK 136
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
LL+ MGVP V+APSE EAQ A + G V S+D DSL FG+P+ R+L RK+P
Sbjct: 137 LLEYMGVPWVQAPSEGEAQAAYMAAKGDVDFTGSQDYDSLLFGSPKLARNLAITGKRKLP 196
Query: 205 ----VMEFEVAKI-----LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+E + I L L +T +Q +D+ +L G DY + ++G+G + A K I+ +G
Sbjct: 197 GKNVYVEVKPEIIDLNGNLRRLGITREQLVDIALLVGTDYNEGVKGVGVKKAYKYIKTYG 256
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ L+ + E+ I +E R F P V + + + PD+E +I FL E
Sbjct: 257 DVFKALKALKVEQENI------EEIRNFFLNPPVTNN---YSLHFGKPDDEKIIEFLCEE 307
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+ F+ DRV KA+EK+KA ++SQ LE +F
Sbjct: 308 HDFSKDRVEKAVEKLKAGM-QASQSTLERWF 337
>gi|255513611|gb|EET89877.1| XPG I domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 352
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 198/353 (56%), Gaps = 13/353 (3%)
Query: 6 LTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSH 64
+ ++ D + +++EQ S G+ +A+DA +YQFL ++ + +L +E G VTSH
Sbjct: 1 MVQMSVDLSKLAVREQLDIGSLSGKVVAVDAYNVLYQFLSIIRQPDGSLLCDEKGNVTSH 60
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI 124
L G+F R+I L+ G+ +YVFDG P LKK+ + R S+R A + +AV G E++
Sbjct: 61 LSGLFYRSIDLIAKGVNLVYVFDGMPSTLKKKTIEARISRREKAYEAWQKAVAEGQAEEV 120
Query: 125 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 184
KF++ + ++TK+ K LL MG+ + APSE EAQ + +C G YA AS+D D+L
Sbjct: 121 RKFAQASTRITKEIVSSAKELLGYMGIWYINAPSEGEAQASYMCSKGIAYAAASQDYDTL 180
Query: 185 TFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDY 235
FG+ + +R+L RK+P ++ L L +T + I + IL G D+
Sbjct: 181 LFGSKKVVRNLTLSGRRKLPGKNVFVNVNPEMVDLDATLGSLGITRQKLIWIGILLGTDF 240
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV--VTDE 293
D ++G+G +TALK ++ SI I+E ++++ + ++ LF PEV +T+
Sbjct: 241 NDGVKGVGPKTALKAVKSSNSITDIIE-FAKQKFNYEFEVDPKDVEDLFMHPEVSEITEA 299
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
E + +PD E +I+F+ +E+GF+ RV K + +K A+ S+Q + S+
Sbjct: 300 ELGKGVSKSPDAEKIIHFMCAEHGFDEARVRKFSDVLKKARGTSAQKGISSWM 352
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 177/317 (55%), Gaps = 18/317 (5%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
AID + ++YQFL ++ + L N G +TSHL G+F RT+R LE G++P+Y+FDG+PP
Sbjct: 26 AIDGNNALYQFLSIIRQPDGTPLMNSEGRITSHLSGVFFRTLRFLEKGIRPVYIFDGKPP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
LK++ + R R +A A+ G++E+ K ++ + +VT + K LL LMGV
Sbjct: 86 ALKQETIESRREVRREAGVQWEAALARGDQEEAYKQARASSRVTPEIIATSKELLTLMGV 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 211
P V+APSE EAQ A++ SG V S+D DSL FGAP +R+L S R++ V
Sbjct: 146 PCVQAPSEGEAQAASMAASGAVTYAVSQDYDSLLFGAPLLVRNLTVSSKRRVQGRTIAVQ 205
Query: 212 -------KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
++L L +T +Q I+ IL G D+ IRG+G +TALK++++ G + I E +
Sbjct: 206 PESIRLDEVLGGLGITREQLIEAGILIGTDFNPGIRGVGPKTALKIVKKDGFADMIAEKL 265
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
D+ + F+ P V+ + L + W PD+ G+ + L E GF ++RV
Sbjct: 266 --------PDFDPSPILQFFRSPPVIAN---LSLDWQPPDQAGIEDLLCGEYGFATERVR 314
Query: 325 KAIEKIKAAKNKSSQGR 341
A++KI + + R
Sbjct: 315 TALQKISGPPGQKTLDR 331
>gi|119719343|ref|YP_919838.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|119524463|gb|ABL77835.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 341
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 192/326 (58%), Gaps = 24/326 (7%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRL-LEAGMKPIYVF 86
GR +A+DA S+YQFL +V + TN GEVTSHL G+ +R RL E I+VF
Sbjct: 21 GRVLAVDALNSVYQFLALVRDERGMLFTNSRGEVTSHLIGLLSRYSRLAYEYDASFIFVF 80
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK-FSKRTV--KVTKQHNDDCK 143
DG P LK +EL KR +R A + AE + G D+ K FSK V +V + + K
Sbjct: 81 DGSPHPLKARELEKRKKQREKAKQEYAELLSKG---DLRKAFSKAVVSAEVDDRIVESTK 137
Query: 144 RLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL------MD 197
RL++LMG PVV+A +AEAQ A L K G+ +AV+S D DSL +G+PR +R+L
Sbjct: 138 RLVRLMGFPVVDAVHDAEAQAAYLVKRGEAWAVSSMDWDSLLYGSPRLVRYLTLTGFEWL 197
Query: 198 PSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
PS +K + E+ + E L+ +T+ Q +D+ IL G DY + ++G+G ALK+I+++
Sbjct: 198 PSKQKARKLIPELVTLEELLSGHGITLRQLVDIAILVGTDYNEGVKGVGPLRALKMIKRY 257
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
GS+E + ++ R +PE+ Y+ R++F P + E+ + +S PD+EGL+ FLV
Sbjct: 258 GSLENLPVSVRR---HLPEN--YEAVRQIFLNPPL---NEKYSLSFSPPDKEGLMKFLVD 309
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQG 340
EN F+ RV + +++AA + G
Sbjct: 310 ENDFSPKRVEVYLRRLEAAYERRKGG 335
>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 302
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAAS 124
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 229
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 230 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 288
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 344
+V EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 IVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 345 FF 346
+F
Sbjct: 301 WF 302
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 185/329 (56%), Gaps = 21/329 (6%)
Query: 29 RKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG 88
R +A+DA ++YQFL ++ + L ++ G VTSHL G+ R L+E GMKP++VFDG
Sbjct: 22 RTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSHLSGIIYRVTNLVEEGMKPVFVFDG 81
Query: 89 QPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 148
+PP K + + R R +A + EA +A + K+++ + + +Q DD K LL
Sbjct: 82 KPPSFKAETIKARAEVR-EAARQMYEAAKAAGSAEAYKYAQASTSINRQIVDDAKVLLGY 140
Query: 149 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---- 204
MG+P + APSE EAQ A + G V S+D DSL FGAPR +R++ RK+P
Sbjct: 141 MGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVRNIAITGKRKVPRKNI 200
Query: 205 VME-----FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG-SIE 258
M+ E+ ++L L LT ++ ID+ IL G DY I +G +TALKL+++HG ++
Sbjct: 201 YMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYNPGIFKVGPKTALKLVKKHGDNMP 260
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
IL+ + Q E+W + + F P V D Q+KW P+ + FL E+ F
Sbjct: 261 AILDELG----QTIENW--EAIKEFFLHPTVTDD---YQVKWGKPEPAKIKEFLCEEHSF 311
Query: 319 NSDRVTKAIEKIKAAKNKSS-QGRLESFF 346
+ DRV K +E++ A ++++ Q L S+F
Sbjct: 312 SVDRVDKVLERLTTAVSETTKQKTLSSWF 340
>gi|406699180|gb|EKD02391.1| flap endonuclease [Trichosporon asahii var. asahii CBS 8904]
Length = 344
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 142/191 (74%), Gaps = 3/191 (1%)
Query: 75 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 134
+++ G+KP YVFDG+PPDLK L +R+ +R +A + EA E G EDI++ S+R V+V
Sbjct: 1 MVDNGIKPCYVFDGKPPDLKSGVLKQRFGRREEAKEAEEEARETGTAEDIDRMSRRQVRV 60
Query: 135 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 194
TK+HN++CKRLL LMG+P V AP EAEAQCA L ++G+V+A SEDMD+LTF P LRH
Sbjct: 61 TKEHNEECKRLLGLMGIPCVTAPGEAEAQCAELARAGKVFAAGSEDMDTLTFHTPILLRH 120
Query: 195 LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
L ++K+P+ E ++ + L+ L++TMDQ LCIL GCDY + ++G+G +TALKL+R+H
Sbjct: 121 LTFSEAKKMPISEIKLEEALKGLDMTMDQ---LCILLGCDYLEPVKGVGPKTALKLMREH 177
Query: 255 GSIETILENIN 265
GS+E ++E I
Sbjct: 178 GSLEKVVEFIK 188
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA++LF P+VV E+ Q PD EGL+ FLV E GF DRV K
Sbjct: 244 QIPEYWPWEEAKKLFITPDVVKGEDLEQ-----PDVEGLVEFLVREKGFKEDRVRAGAAK 298
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ QGRL+ FF T AP ++ E
Sbjct: 299 LSKMLAAKQQGRLDGFFTVKPKTDAPKRKAE 329
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 191/321 (59%), Gaps = 19/321 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ +AID +YQFL + L N GE+TS G+F +TI +LE + P++VFD
Sbjct: 21 GKTVAIDGMNVLYQFLSSIRLRDGSPLRNRKGEITSTYNGIFYKTIYMLENDITPVWVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP LK++ +R R A ++ +A E N ++++K++KR +TK ++ K+LL
Sbjct: 81 GKPPKLKEKTREERRKMREKAKEEFTKAKEMENIDEMQKYAKRMNFLTKDIVENSKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
LMGVP V AP+E E Q + + K G V+ V S+D D+L +GAPR +R+L ++ K +
Sbjct: 141 LMGVPYVNAPAEGEGQASYMAKKGDVFCVISQDYDALLYGAPRIVRNL---TATKEELEL 197
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINR 266
E+ +L EL ++ D ID+ IL G DY ++GIG + AL++++ N+
Sbjct: 198 IELENVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIVKSK----------NK 247
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
E Y + Y+E + +FK P+ VTDE +++K PD+EG+I FLV EN F+ +RV
Sbjct: 248 ELY-LKAVENYEEIKNIFKNPK-VTDEYSIKLK--KPDKEGIIKFLVEENDFSMERVQPH 303
Query: 327 IEKI-KAAKNKSSQGRLESFF 346
+EK+ K + K+ Q L+++F
Sbjct: 304 VEKLCKLIEKKTKQVTLDAWF 324
>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
Length = 302
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAAS 124
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 229
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 230 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 288
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 344
VV EE L + + P+++ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 VVKPEETLDL--NEPNDKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 345 FF 346
+F
Sbjct: 301 WF 302
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 188/324 (58%), Gaps = 12/324 (3%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
F+ GR I+IDA ++YQFL + + L++ G +TSHL G+ R ++E +KP
Sbjct: 16 FKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSHLSGILYRNSSMIEKDIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
IYVFDG P LK++ + +R R ++ EA+ + ++ K++ R+ K++ +
Sbjct: 76 IYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEARKYAMRSSKLSPYIIESS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+LL +MG+P +EA E EAQ A L ++G +AVAS+D D L FGA R +R+L S+
Sbjct: 136 KKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAINSNLG 195
Query: 203 IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE 262
+ + + ++L+EL++ +Q ID+ IL G D+ + ++G+G +TALKL ++ G +E L
Sbjct: 196 -DLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKK-GELENKLA 253
Query: 263 NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
+ E E R +F V T+ +I+W P + +I+FL E+GF+ DR
Sbjct: 254 KLQEESSH-----DISEVREIFLNHNVNTN---YKIRWKKPAKNDIIDFLCEEHGFSQDR 305
Query: 323 VTKAIEKIKAAKNKSSQGRLESFF 346
V+KA +K+K SSQ LE +F
Sbjct: 306 VSKACDKLKNL--NSSQKSLEDWF 327
>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
Length = 324
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 186/317 (58%), Gaps = 19/317 (5%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
AIDA IYQFL + L N +GE+TS G+F +TI +LE + PI+VFDG+
Sbjct: 25 AIDAMNVIYQFLSSIRLKDGSPLKNRSGEITSTYNGIFYKTIYMLENEITPIWVFDGKSH 84
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
DLK++ R R +A ++ EA E N E+++K++KR + K+ ++ KRLL+LMGV
Sbjct: 85 DLKEKTKEDRRKLRQNALENYLEAKEQDNLENMQKYAKRANFLDKKTIENSKRLLELMGV 144
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 211
P + APSE EAQCA L KS V S+D DS+ +GA ++++ S++ + ++ E++
Sbjct: 145 PYINAPSEGEAQCAELVKSKNASFVVSQDYDSILYGAESVVKNIT-SSNKSLELI--ELS 201
Query: 212 KILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQ 270
K+L ELN+ + + ID+ IL G DY I+GIG + A +++++ E+Y
Sbjct: 202 KVLTELNVNLLELIDVAILIGTDYNPGGIKGIGPKKAFEVVKKG----------QMEKYA 251
Query: 271 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 330
E Y E R++F EP V+TD E I P ++ LI FLV EN F+ +RV IEK+
Sbjct: 252 F-EIQNYSEIRKIFDEPNVITDYE---IGLKLPRKDELIEFLVEENDFSKERVLPNIEKL 307
Query: 331 K-AAKNKSSQGRLESFF 346
NK SQ LES+F
Sbjct: 308 DLLLGNKKSQKSLESWF 324
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 39 IYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
+YQFL + + L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 99 AKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS 158
+R ++A+A AVEAG E+ K++ ++T ++ K LL MG+P V+AP+
Sbjct: 62 EERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPA 121
Query: 159 EAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FE 209
E EAQ A + + G +A S+D DSL FG+PR +R+L RK+P + E
Sbjct: 122 EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIE 181
Query: 210 VAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRER 268
+ +L +L +T +Q I + IL G DY +RG G +TAL+L++ G +L ++ R
Sbjct: 182 LEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASVPRGE 241
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y D+ ++ F P D +I++ PD++ + LV + FN +RV +A+E
Sbjct: 242 YD--PDY-LRKVHEYFLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALE 295
Query: 329 KIKAA---KNKSSQGRLESFF 346
++ A K + Q RL+ +F
Sbjct: 296 RLAKAYREKLRGRQSRLDMWF 316
>gi|395646325|ref|ZP_10434185.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
gi|395443065|gb|EJG07822.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
Length = 333
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 179/323 (55%), Gaps = 21/323 (6%)
Query: 31 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP 90
IA+DA ++YQFL ++ + L ++ G VTSHL G+F R + LE G++P Y+FDG P
Sbjct: 25 IAVDAFNALYQFLTIIRQPDGTPLMDKDGRVTSHLSGIFFRNLNFLEKGIRPAYIFDGAP 84
Query: 91 PDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMG 150
PDLK + +A+R R A + EAVE G+ E+ K ++ + ++ KRLL LMG
Sbjct: 85 PDLKTETVARRRGVREAAGERWKEAVERGDIEEAYKQARASTRIDDAMIASSKRLLDLMG 144
Query: 151 VPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV 210
+P + APSE EAQ A + + G V A AS+D D+L FGAPR +R+L RK+ V
Sbjct: 145 IPWMVAPSEGEAQAAFMARQGDVGAAASQDYDALLFGAPRLVRNLTVSGKRKVRGRSVTV 204
Query: 211 -------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN 263
A +L L L+ ++ +++ IL G D+ IRG+G +TALK++R ET+
Sbjct: 205 RPERIDLAAVLAGLGLSREELVEIGILIGTDFNPGIRGVGAKTALKIVRGGKFQETV--- 261
Query: 264 INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
+E+ + P QE F P V D +++W PD +G++ L E F+ R+
Sbjct: 262 --QEKAPDFDPGPVQE---FFLNPPVTGD---YRLEWREPDRDGIVAMLCGEYTFSEGRI 313
Query: 324 TKAIEKIKAAKNKSSQGRLESFF 346
++KI A K+ Q L +F
Sbjct: 314 DAGLQKIGA---KAGQRTLGDWF 333
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 39 IYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
+YQFL + + L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 99 AKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS 158
+R ++A+A AVEAG E+ K++ ++T ++ K LL MG+P V+AP+
Sbjct: 62 EERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPA 121
Query: 159 EAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FE 209
E EAQ A + + G +A S+D DSL FG+PR +R+L RK+P + E
Sbjct: 122 EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIE 181
Query: 210 VAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRER 268
+ +L +L +T +Q I + IL G DY +RG G +TAL+L++ G +L ++ R
Sbjct: 182 LEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASVPRGE 241
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y D+ ++ F P D +I++ PD++ + LV + FN +RV +A+E
Sbjct: 242 YD--PDY-LRKVYEYFLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALE 295
Query: 329 KIKAA---KNKSSQGRLESFF 346
++ A K + Q RL+ +F
Sbjct: 296 RLAKAYREKLRGRQSRLDMWF 316
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 39 IYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
+YQFL + + L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 99 AKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS 158
+R ++A+A A+EAG E+ K++ ++T ++ K LL MG+P V+AP+
Sbjct: 62 EERLKRKAEAEARYRRALEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPA 121
Query: 159 EAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FE 209
E EAQ A + + G +A S+D DSL FG+PR +R+L RK+P + E
Sbjct: 122 EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIE 181
Query: 210 VAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRER 268
+ +L +L +T +Q I + IL G DY IRG G +TAL+L++ G +L ++ R
Sbjct: 182 LESLLSKLGITREQLIAVGILLGTDYNPGGIRGYGPKTALRLVKSLGDPMKVLASVPRGE 241
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y D+ ++ F P D +I++ PD++ + LV + FN +RV +A+E
Sbjct: 242 YN--PDY-LRKVYEYFLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALE 295
Query: 329 KIKAA---KNKSSQGRLESFF 346
++ A K + Q RL+ +F
Sbjct: 296 RLAKAYREKLRGRQSRLDMWF 316
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 39 IYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
+YQFL + + L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+
Sbjct: 2 LYQFLTAIRQPDGTPLMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREV 61
Query: 99 AKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS 158
+R ++A+A A+EAG E+ K++ ++T ++ K LL MG+P V+AP+
Sbjct: 62 EERLKRKAEAEARYRRALEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPA 121
Query: 159 EAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FE 209
E EAQ A + + G +A S+D DSL FG+PR +R+L RK+P + E
Sbjct: 122 EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIE 181
Query: 210 VAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRER 268
+ +L +L +T +Q I + IL G DY IRG G +TAL+L++ G +L ++ R
Sbjct: 182 LESLLSKLGITREQLIAVGILLGTDYNPGGIRGYGPKTALRLVKSLGDPMKVLASVPRGE 241
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y D+ ++ F P D +I++ PD++ + LV + FN +RV +A+E
Sbjct: 242 YD--PDY-LRKVYEYFLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALE 295
Query: 329 KIKAA---KNKSSQGRLESFF 346
++ A K + Q RL+ +F
Sbjct: 296 RLAKAYREKLRGRQSRLDMWF 316
>gi|340501530|gb|EGR28305.1| hypothetical protein IMG5_178850 [Ichthyophthirius multifiliis]
Length = 322
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 173/280 (61%), Gaps = 23/280 (8%)
Query: 60 EVTSHLQGMFT------RTIRLLEAG-MKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 112
E+ H+Q ++ + I+ ++ G + I +F +LKKQ ++ DA +
Sbjct: 42 EIKQHIQQVYLIELFRLQKIKQIQYGYLMEILLF----LNLKKQ------KQKFDALEKQ 91
Query: 113 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 172
+ +E N K +R + +T++ +D ++LKL+G PV+EAP EAEAQCAAL K+GQ
Sbjct: 92 QKFLENQNMVQALKMEQRNIFITQEMKNDAIKMLKLLGFPVIEAPGEAEAQCAALTKTGQ 151
Query: 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232
V+A +EDMD+LTFG LR L +S+K P++E ++L+EL + +QFIDLCIL G
Sbjct: 152 VFATVTEDMDALTFGTTILLRGL---NSKKEPIVEINHYQMLKELEFSENQFIDLCILCG 208
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEVV 290
CDY + I GIG A KLI++ ++E + I ++ R+ IP+++ +QE R LF++PE +
Sbjct: 209 CDYLEKIEGIGPVNAYKLIKEFKNLENTINFIEKKQNRFIIPKNYNFQEVRNLFQKPE-I 267
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 330
+ E+++IKW P+ E L FLV E GFN +R+ K I +I
Sbjct: 268 ENVEKIEIKWQKPNLEKLNQFLVQEKGFNQERILKQINRI 307
>gi|193084162|gb|ACF09827.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-207-H3]
Length = 341
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 196/336 (58%), Gaps = 23/336 (6%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
ES+ + IAIDA +IYQFL ++ LT+ G VTSHL G+ R I L G+KP
Sbjct: 16 LESFSSKIIAIDAYNAIYQFLTIIRGPEGLHLTDSRGMVTSHLTGLLHRNINFLSMGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + +AT +A +G+ E K++++T + + +D
Sbjct: 76 VYVFDGRPPSLKTAEIQRRKLGKIEATIKYEKAKASGDFESARKYAQQTTSMQETMVEDS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K LL L G+P ++A ++ EA A + K+G+ YAVAS+D DS+ FGA + +R+ + RK
Sbjct: 136 KHLLDLFGIPYIQAKADGEATAAHMNKTGKAYAVASQDYDSILFGATKLVRNFTNSGRRK 195
Query: 203 IP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKL 250
+P ++ ++ K L+ L +T +Q ID+ IL G D+ D IG +TALK+
Sbjct: 196 LPNRNTYIDIEPEIINYQ--KSLDALGITGEQIIDIGILVGTDFNPDGFERIGPKTALKM 253
Query: 251 IRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310
I++HG LE+I + + Q+ E Y++ R++F +P++ + +I++ D G+++
Sbjct: 254 IKEHGK----LEDIPKIQEQL-EQIDYKQIRKIFLQPDM---PDIGKIEFKDTDYSGVVD 305
Query: 311 FLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
+L +E F+ +RV ++ ++K K S L+ +F
Sbjct: 306 YLANERSFSQERVQTSLNRLKKNLEKRSH-TLDQWF 340
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 180/329 (54%), Gaps = 20/329 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ IAIDA ++YQFL ++ + L ++ GEVTSHL G+ R L+E G+KP++V+D
Sbjct: 21 GKVIAIDAFNTLYQFLSIIRQMDGTPLVDDKGEVTSHLSGIIYRVTNLVEQGIKPVFVYD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP LK + + R R +A + EA A + K+++ + + Q D K LL
Sbjct: 81 GKPPVLKAETIKARREVR-EAARQMYEAARAAGSAEAYKYAQASTSINAQIIKDSKELLG 139
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP--- 204
MG+P + APSE EAQ A + + G V S+D DSL FGAPR +R++ RKIP
Sbjct: 140 YMGMPFLIAPSEGEAQAAYMVQKGAADFVGSQDYDSLLFGAPRMVRNVTITGRRKIPRRG 199
Query: 205 ------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
E+ ++LE L +T +Q ID+ IL G D+ I +G +TALKL+++H +
Sbjct: 200 VYVDVKPQIVELKEVLETLEVTREQLIDMGILVGTDFNPGIYKVGPKTALKLVKKHPDMR 259
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
IL+ + ++ YQE R F P D IKW P+ E + +FL E+ F
Sbjct: 260 AILDELGQDIEN------YQEIREFFLHPPTTDD---YSIKWGRPEPEKIRHFLCDEHNF 310
Query: 319 NSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
+ +RV K IE++ +A Q L ++F
Sbjct: 311 SPERVDKVIERLDRAVSETGKQKTLSAWF 339
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 191/333 (57%), Gaps = 14/333 (4%)
Query: 14 APKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTI 73
P+++K Q ES + +A+DA+ IYQFL + + L +E +TSH G+ RT
Sbjct: 10 TPENIKFQDLES---KIVALDAANVIYQFLSSIRQVDGTPLMDENKNITSHFSGILYRTS 66
Query: 74 RLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 133
L+E G+KPIY+FDG LKK KR + ++ +A+E GN E+ K++ R+ +
Sbjct: 67 SLIEKGIKPIYIFDGVSDALKKDTQDKRREVKEESQKKWDKALEEGNLEEARKYAVRSSR 126
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+++ + K+LL+++GVP ++A E EAQ + + ++G + V S+D D + FGA R +R
Sbjct: 127 MSRDIIEGSKKLLEILGVPYIQALGEGEAQASYMVENGDAWCVGSQDYDCILFGATRMVR 186
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
+L + K + + K+LE + +T +Q +D+ IL G D+ ++G+G +T LKLI++
Sbjct: 187 NLT-ITGGKANLELITLKKVLENMEITREQLVDIAILVGTDFNRGVKGVGAKTGLKLIKK 245
Query: 254 HGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
HG I ++E + Y++ D R +F E VV D E +KW++PD+E + FL
Sbjct: 246 HGDIFNVIE---KNDYEMDVDPTI--LRNMFLEHNVVKDYE---LKWNSPDKEAAVEFLC 297
Query: 314 SENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++ F+ RV A++K NK Q LE +F
Sbjct: 298 DQHDFSEQRVLSALDKFAKLDNK--QKSLEDWF 328
>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-21-C11]
Length = 341
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 191/335 (57%), Gaps = 19/335 (5%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
ES+ + IAIDA +IYQFL ++ LT+ G VTSHL G+ R + L G+KP
Sbjct: 16 LESFSSKIIAIDAYNAIYQFLAIIRGPEGLHLTDNRGRVTSHLTGLLYRNVNFLSIGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + +AT +A +G+ E K++++T + +D
Sbjct: 76 VYVFDGKPPSLKTAEIQRRKLGKKEATIKYEKAKASGDFESARKYAQQTTSMQDTMVEDS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K L L G+P ++A ++ EA A + K+G+ YAVAS+D DS+ FGA + +R+ + RK
Sbjct: 136 KHFLDLFGIPYIQAKADGEATAAHMNKTGKAYAVASQDYDSILFGATKLVRNFTNSGRRK 195
Query: 203 IPVMEFEV---------AKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
IP + K L+ L +T +Q ID+ IL G D+ D IG +TALK+I+
Sbjct: 196 IPNRNTYIDVEPEMISHQKSLDALGITGEQIIDIGILVGTDFNPDGFERIGPKTALKMIK 255
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
++G +E I I E QI Y++ R++F +P++ + +I++ D G++++L
Sbjct: 256 EYGKLEDI-PKIQEELKQI----DYKQIRKIFLQPDMPDID---KIEFKDTDYSGIVDYL 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+E F+ +RV ++ ++K + K S L+ +FK
Sbjct: 308 ANERSFSEERVKASLNRLKKSIEKRSH-TLDQWFK 341
>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
Length = 338
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 183/337 (54%), Gaps = 19/337 (5%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
KE + + + +AIDA ++YQFL ++ + L + G TSHL G+ R L+E
Sbjct: 12 KEVEISNLSNKTVAIDAYNTLYQFLSIIRQRDGTPLQDSKGRTTSHLSGILYRITNLVEE 71
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 138
+KP++VFDG+PPD K L KR R +A EA E G E+ K+++ + ++ Q
Sbjct: 72 DIKPVFVFDGKPPDFKTDTLEKRKQSRENANQKWNEAKEKGLTEEAYKYAQGSARIDDQI 131
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
DD K LL+ MG+P +++PSE EAQ A + + G V S+D D+L FGAP +R+L
Sbjct: 132 LDDAKYLLESMGIPYLQSPSEGEAQAAHMVQKGDADYVGSQDYDALLFGAPHVIRNLTIT 191
Query: 199 SSRKIPVME---------FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 249
RK+P ++ + L+ + +T + ID+ + G DY + IG + ALK
Sbjct: 192 GKRKLPGKNTYIDLKPETIDMEENLKSMGITRSKLIDIALCVGTDYNKGLEKIGPKRALK 251
Query: 250 LIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
L++ H SI++I++ + + + + F PEV D +KW+ P+++ +I
Sbjct: 252 LVKTHDSIKSIIDETGQNIENV------DKVKDFFMNPEVTDD---YHLKWNRPNKDKII 302
Query: 310 NFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
FL E+ F+ +RV KA +++ +K S Q L+ +F
Sbjct: 303 QFLCEEHDFSEERVAKACDRLD-SKLGSQQKTLDQWF 338
>gi|410670767|ref|YP_006923138.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409169895|gb|AFV23770.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 338
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 179/327 (54%), Gaps = 23/327 (7%)
Query: 31 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP 90
IAIDA ++YQFL ++ + L + G +TSHL G+ R L+EAG++P++VFDG+P
Sbjct: 24 IAIDAYNTLYQFLSIIRQKDGTPLKDSKGNITSHLSGLLYRMSSLMEAGIRPVFVFDGKP 83
Query: 91 PDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMG 150
P +K + KR R +A +A E G E+ K+++ + +V +D ++LL MG
Sbjct: 84 PQMKSPTIEKRVQARENAQMKWEQAQEEGLAEEAYKYAQASSRVDATIVEDSRKLLNAMG 143
Query: 151 VPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP------ 204
+P ++APSE EAQ A + S+D DSL FGAPR +R+L RK+P
Sbjct: 144 IPFLDAPSEGEAQAAYMVIKRDADYAGSQDYDSLLFGAPRVVRNLTVSGKRKLPKKNLYV 203
Query: 205 -----VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
VME E + L L++T +Q ID+ + G DY I IG + ALKL+++HGSIE
Sbjct: 204 DVKPEVMELE--ETLLGLDVTREQLIDIALCVGTDYNQGITNIGPKKALKLVKEHGSIEK 261
Query: 260 ILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319
IL + E IP+ + F P V D + W P + ++ L E+ F+
Sbjct: 262 ILASTGNE---IPD---LGNIKDFFMNPPVTKD---YGLNWKKPKTDSVLELLCDEHDFS 312
Query: 320 SDRVTKAIEKIKAAKNKSSQGRLESFF 346
+RV+KA+EK++ + Q L+++F
Sbjct: 313 RERVSKALEKLEVSSG-GGQKTLDNWF 338
>gi|238597041|ref|XP_002394219.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
gi|215462894|gb|EEB95149.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
Length = 156
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 127/154 (82%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGLT L++++AP ++KE + ++ FGRK+AIDASMSIYQFLI V + EMLTN+AGE
Sbjct: 1 MGIKGLTGLISEHAPNAIKEHEIKTLFGRKVAIDASMSIYQFLIAVRQRDGEMLTNDAGE 60
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+++R +A ++ EA E G
Sbjct: 61 TTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFARREEAKEEGEEAKEVGT 120
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV 154
ED+++FS+RTVKVTKQHN++C RLLKLMG+PV+
Sbjct: 121 AEDVDRFSRRTVKVTKQHNEECVRLLKLMGIPVI 154
>gi|401888159|gb|EJT52124.1| flap endonuclease [Trichosporon asahii var. asahii CBS 2479]
Length = 359
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 136/184 (73%), Gaps = 3/184 (1%)
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
P YVFDG+PPDLK L +R+ +R +A + EA E G EDI++ S+R V+VTK+HN++
Sbjct: 23 PCYVFDGKPPDLKSGVLKQRFGRREEAKEAEEEARETGTAEDIDRMSRRQVRVTKEHNEE 82
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
CKRLL LMG+P V AP EAEAQCA L ++G+V+A SEDMD+LTF P LRHL ++
Sbjct: 83 CKRLLGLMGIPCVTAPGEAEAQCAELARAGKVFAAGSEDMDTLTFHTPILLRHLTFSEAK 142
Query: 202 KIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
K+P+ E ++ + L+ L++TMDQ LCIL GCDY + ++G+G +TALKL+R+HGS+E ++
Sbjct: 143 KMPISEIKLEEALKGLDMTMDQ---LCILLGCDYLEPVKGVGPKTALKLMREHGSLEKVV 199
Query: 262 ENIN 265
E I
Sbjct: 200 EFIK 203
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 270 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 329
QIPE WP++EA++LF P+VV E+ Q PD EGL+ FLV E GF DRV K
Sbjct: 259 QIPEYWPWEEAKKLFITPDVVKGEDLEQ-----PDVEGLVEFLVREKGFKEDRVRAGAAK 313
Query: 330 IKAAKNKSSQGRLESFFKPVANTSAPIKRKE 360
+ QGRL+ FF T AP ++ E
Sbjct: 314 LSKMLAAKQQGRLDGFFTVKPKTDAPKRKAE 344
>gi|296108985|ref|YP_003615934.1| flap structure-specific endonuclease [methanocaldococcus infernus
ME]
gi|295433799|gb|ADG12970.1| flap structure-specific endonuclease [Methanocaldococcus infernus
ME]
Length = 323
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 199/342 (58%), Gaps = 27/342 (7%)
Query: 10 LADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMF 69
L D PK K F G+K+AID +IYQFL + LTN+ G +TS G+F
Sbjct: 5 LGDYIPK--KRIDFNDLKGKKLAIDGFNAIYQFLSSIRLKDGSPLTNKRGGITSAYNGIF 62
Query: 70 TRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK--F 127
+TI LLE + PI+VFDG+PP LK++ KR ++ A + L E +++IE+ +
Sbjct: 63 YKTIMLLENDIIPIWVFDGEPPKLKEKTREKRREEKKKAEEKLREV-----QDEIERARY 117
Query: 128 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
KR V K ++CK LL LMG+P V+APSE EAQ + + K G V+AV S+D DSL +G
Sbjct: 118 FKRLSYVNKDMIENCKYLLSLMGIPYVQAPSEGEAQASYMAKKGDVWAVVSQDYDSLLYG 177
Query: 188 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQT 246
APR +R+L ++ K + E+ ++LE L +++D ID+ I+ G DY I GIG +
Sbjct: 178 APRVVRNL---TTTKDELELIELNEVLENLRISLDDLIDIAIMMGTDYNPKGIEGIGFKR 234
Query: 247 ALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 306
A +++R + + + + + Y+E + +FK P VTD+ L ++ PD+E
Sbjct: 235 AYEMVRARVAKDILKKEVKN----------YEEIKNIFKNPR-VTDDYSLNLR--LPDKE 281
Query: 307 GLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFK 347
GLI FLV E+ FN +RV K ++K+ +K+ Q L+S+FK
Sbjct: 282 GLIKFLVEEHDFNYERVKKHVDKLYNLIVSKTKQRTLDSWFK 323
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 180/322 (55%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A+DA ++YQFL ++ + L N AG VTSHL G+ RT+ LE G+KP++VFDG+PP
Sbjct: 26 AVDAHNALYQFLSIIRQPDGTPLMNGAGRVTSHLSGILFRTVNFLEKGIKPVFVFDGKPP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
+ K++ + +R R A + A++ G+ E+ K + + ++ + + LL L+G+
Sbjct: 86 EFKQETIEQRREVRNRANEAWKAALKEGDMEEAYKQASASTRIDRHIIESSHELLDLLGI 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK-------IP 204
PVV+APSE EAQ A + +SG V S+D DSL FG+P +R+L RK +
Sbjct: 146 PVVQAPSEGEAQAAHMVRSGGVTYAVSQDYDSLLFGSPVLVRNLTVSGRRKARGRTITVN 205
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
F ++ +L+ L +T +Q I++ IL G D+ IRG+GG+TALK++R G E+++
Sbjct: 206 PERFVLSSVLDRLGVTREQLIEIGILVGTDFNPGIRGVGGKTALKVVRS-GEFESLIA-- 262
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
+ D+ R F+ P + D ++W PD E ++ L F+ DRV
Sbjct: 263 -----EKQPDFDPGPIREFFQNPPITDD---YALEWRTPDVERVVEMLCGRYDFSEDRVR 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
A+ K+ K++Q L+++F
Sbjct: 315 NALTKVSV---KATQKTLDAWF 333
>gi|170291015|ref|YP_001737831.1| flap endonuclease-1 [Candidatus Korarchaeum cryptofilum OPF8]
gi|226700953|sp|B1L6R9.1|FEN_KORCO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170175095|gb|ACB08148.1| XPG I domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 342
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/357 (36%), Positives = 201/357 (56%), Gaps = 26/357 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAG 59
MG+K + +L+ D E + G+KIA+DA ++YQFL V + GT ++T++ G
Sbjct: 1 MGVK-IGELIEDKV-----ELELSDIAGKKIALDAFNAMYQFLAKVRQPDGTPLMTSK-G 53
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TS G+F RT L+ G+ PIYVFDG+ P K + + +R R +A EA+E G
Sbjct: 54 EITSVHSGIFYRTANFLKEGIIPIYVFDGEKPSFKSRAIEERVRAREEAELKWKEALEIG 113
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E+ K+++ + +T +DCK +LKLMGVP+V+APSE EAQ A + G V+A AS+
Sbjct: 114 DLEEARKYAQAALNITGDIVEDCKTILKLMGVPIVQAPSEGEAQAAHMAMKGDVWATASQ 173
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCIL 230
D DSL FGAPR +R+L RK+P E E+ +L+ ++ +Q I + IL
Sbjct: 174 DYDSLLFGAPRLIRNLTITGKRKLPGKEVYVDINPELIELESVLKRNGISREQLIMIGIL 233
Query: 231 SGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV 289
G DY ++GIG + AL+L++++ E + + E + + Y+ F P
Sbjct: 234 VGTDYNLGGVKGIGVKRALELVKKYKRPEDLFSKVPWE-FDVDPISIYE----FFLNPP- 287
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
TD+ +K DE L+ F+V E+ F+ +RV K I +I+ + S G LES+F
Sbjct: 288 TTDDYDTSLKRPMSDE--LLKFMVEEHEFSEERVKKVINEIEESYRMLSGGGLESWF 342
>gi|84489880|ref|YP_448112.1| flap endonuclease-1 [Methanosphaera stadtmanae DSM 3091]
gi|121717163|sp|Q2NFD4.1|FEN_METST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|84373199|gb|ABC57469.1| flap structure-specific endonuclease [Methanosphaera stadtmanae DSM
3091]
Length = 328
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 193/346 (55%), Gaps = 18/346 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K K + + P MKE + G+ + +DAS IY+FL + +T L + G
Sbjct: 1 MGVK--FKDITNPEPIEMKELE-----GKILTVDASNVIYKFLSSMRQTDGTPLRDLNGH 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+ +T L+E +KP+YVFDG+ PDLKK+ +R + + ++ EA E G+
Sbjct: 54 ITSHLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEVGD 113
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K++ RT + K+ K+LL LMG+P V+A +E EAQ + + +AV S+D
Sbjct: 114 VVAARKYAARTTHLNKEIIKSSKKLLDLMGIPYVQARTEGEAQASYMVSQNDAWAVVSQD 173
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D L FGA R +R+L S + + K L+ELNLT +Q +D+ +L G D+ +
Sbjct: 174 YDCLQFGATRMIRNLKLSKSNSKNLELISLEKTLKELNLTREQLVDVAMLVGTDFNKGVY 233
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 300
GIG + +KLI ++G++E LE++N E ++ + R +F P VV I++
Sbjct: 234 GIGAKKGIKLIHKYGTLEKALESLN-ETMEVDAEL----IREIFLNPNVV---HNYTIEF 285
Query: 301 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
P + L++FL E+ F+ R AI+K++A K++Q LE +F
Sbjct: 286 KRPKKSQLLDFLCGEHDFDERRTISAIKKLQA---KTAQSSLEDWF 328
>gi|410669636|ref|YP_006922007.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409168764|gb|AFV22639.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 341
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 190/329 (57%), Gaps = 15/329 (4%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
+E G+ IAIDA +IYQFL + + +LT+ +G TSHL G+F+RT +L +A +KP
Sbjct: 16 YEELSGKVIAIDAYNTIYQFLSAIRQKDGSLLTDSSGNPTSHLTGLFSRTSKLRDANIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+++FDG+PP++KK+ L KR + AT + A E GN ED++KF++ T ++T Q D+
Sbjct: 76 VFIFDGKPPEMKKETLEKRRGIKETATLNYEIAREEGNLEDMKKFAQGTSRITPQILDES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+LL+LMG+P ++A SEAEAQ A + G V S+D D+ FGA +R+L RK
Sbjct: 136 KKLLELMGIPCLQAESEAEAQAAFMTSRGDADLVGSQDYDAFLFGAESVVRNLGSTGKRK 195
Query: 203 IPVMEFEVAKI---------LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
IP VAK LE+L +T +Q ID+ I G D+ + I +G +TALKLI +
Sbjct: 196 IPGRNAYVAKTPEHISLSGSLEQLEITREQLIDVAICIGTDFNEGIHHVGAKTALKLILK 255
Query: 254 HGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
H I T+++ N++ I +E R F P V D +KW P+ + L +FLV
Sbjct: 256 HRDIITMIKEENKD---IRTCASVEEIREFFLNPPVTRD---YTLKWKKPEPDVLFDFLV 309
Query: 314 SENGFNSDRVTKAIEKIKAAKNKSSQGRL 342
E F+ +V I+ ++ + + Q L
Sbjct: 310 RERDFSEKQVLGNIKILEGRASDNCQSCL 338
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 188/319 (58%), Gaps = 12/319 (3%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G IAIDAS IYQFL + + L + G VTSHL G+ RT L+E +KP+YVFD
Sbjct: 21 GLTIAIDASNWIYQFLSSIRQRDGTPLMDRKGRVTSHLVGILHRTSALVENNIKPVYVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+ LK + +++R R +A EA++ + E K++ R +++K+ + K LL
Sbjct: 81 GKSLALKSETISERTRMRLEAEKRWKEALKKKDLEKARKYASRASRISKEIIESSKELLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
MG+P ++AP+E EAQ L K+G +AVAS+D D L FGAPR +R+L S + ++E
Sbjct: 141 AMGIPYIQAPNEGEAQAVYLVKNGDAWAVASQDYDCLLFGAPRVIRNLAISSDINLELLE 200
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
+ KIL++L ++ +Q ID+ +L G D+ ++GIG + L+LI++ G I T+++ +N E
Sbjct: 201 LD--KILKKLGISREQLIDIALLVGTDFNPGVKGIGAKRGLELIKKFGDIYTVIKRMNLE 258
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
D+ + R +F +P+V + + + PD+E +I FL E+ F+ +RV
Sbjct: 259 -----VDFDPEVLRNIFLKPKVKKKYKIVWKR---PDKEKMIKFLCDEHDFSKERVLNVF 310
Query: 328 EKIKAAKNKSSQGRLESFF 346
+K+K K +Q RLE +F
Sbjct: 311 KKLK--KVDFTQRRLEEWF 327
>gi|116754923|ref|YP_844041.1| flap endonuclease-1 [Methanosaeta thermophila PT]
gi|121693591|sp|A0B9M7.1|FEN_METTP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116666374|gb|ABK15401.1| flap endonuclease 1 [Methanosaeta thermophila PT]
Length = 336
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 186/339 (54%), Gaps = 21/339 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S K+ E+ G IA+D ++YQFL ++ + L + +G VTSHL G+ R L+
Sbjct: 10 SKKKISLENLSGCWIAVDGFNTLYQFLSIIRQPDGTPLMDASGRVTSHLSGLLYRMTNLI 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E G++ +VFDG PP+LK LA R + A L EA+ G D ++++ T ++
Sbjct: 70 EVGIRVAFVFDGTPPELKAGTLAARAQMKEAAEIQLQEAIATG--VDSFRYAQATARINS 127
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ D RLL MG+P V+APSE EAQ A + G V VAS+D DSL FGAPR +R+L
Sbjct: 128 EILHDSIRLLDAMGIPYVQAPSEGEAQAAFMAIRGDVDYVASQDYDSLLFGAPRVVRNLA 187
Query: 197 DPSSRKIPVMEFEV-----AKILEE----LNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P + ILEE L ++ +Q ID+ I+ G DY + +G + A
Sbjct: 188 ITGRRKMPRKNIYIDVPPEVIILEEELTRLGISREQLIDIGIMCGTDYNRGLPKVGPKRA 247
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
LKLIR+HG +E +L+ + ++E R LF P VT+ +L+++ DE
Sbjct: 248 LKLIREHGCLEAVLDALGESIEN------FREIRELFLHP-AVTESYELRMRKPMVDE-- 298
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++ FL +E F+ DRV KA E++ A+ +S Q LE +
Sbjct: 299 IVGFLCNERNFSEDRVRKAAERLNASY-RSGQSTLERWL 336
>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
Length = 304
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 185/304 (60%), Gaps = 20/304 (6%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTE 64
Query: 119 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
G+ +++K+++ ++K+T + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GSIKTSELKKYAQMSIKLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 227
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLVRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 228 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRGLFLN 242
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 342
P+VV +E L++ +A D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--AACDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 343 ESFF 346
+ +F
Sbjct: 301 DQWF 304
>gi|374636521|ref|ZP_09708087.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
gi|373558724|gb|EHP85052.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
Length = 326
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 190/321 (59%), Gaps = 19/321 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ +AID +YQFL + L N+ GE+TS G+F +TI +LE + P++VFD
Sbjct: 21 GKTVAIDGMNVLYQFLSSIRLRDGSPLRNKKGEITSTYNGIFYKTIYMLENDVTPVWVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+PP LK++ +R R A ++ +A E N E+++K++KR +TK ++ K+LL
Sbjct: 81 GKPPKLKEKTREERRKMREKAKEEFIKAKEIENIEEMQKYAKRMNFLTKDIVENSKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
LMG+P V AP+E E Q + + K G V+ V S+D D+L +GAPR +R+L ++ K +
Sbjct: 141 LMGIPYVNAPAEGEGQASYMAKKGDVFCVVSQDYDALLYGAPRVVRNL---TATKEELEL 197
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINR 266
E+ ++L EL ++ D ID+ IL G DY ++GIG + AL++ + E L+ I
Sbjct: 198 IELKEVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIAKSKNK-ELYLKAIEN 256
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
Y+E + +FK P+ VTDE +++K PD++ +I FLV EN F+ DRV
Sbjct: 257 ----------YEEIKNIFKNPK-VTDEYNIKLK--KPDKDSIIKFLVEENDFSLDRVQPH 303
Query: 327 IEKI-KAAKNKSSQGRLESFF 346
+EK+ K + K+ Q L+++F
Sbjct: 304 VEKLCKLIEKKTKQVTLDAWF 324
>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
Length = 304
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAE 64
Query: 119 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + +K+++ +++++ + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GNIKTSEFKKYAQMSIRLSNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 227
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 228 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLN 242
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 342
P+VV +E L++ + D+ +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--ADCDDNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 343 ESFF 346
+ +F
Sbjct: 301 DQWF 304
>gi|193084327|gb|ACF09984.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-49-D2]
Length = 341
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 195/337 (57%), Gaps = 25/337 (7%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
ES+ + IA+DA +IYQFL ++ LT+ G VTSHL G+ R + L G+KP
Sbjct: 16 LESFSSKIIAVDAYNAIYQFLAIIRGPEGLHLTDNRGRVTSHLTGLLHRNVNFLSIGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + +AT +A +G+ E K++++T + +D
Sbjct: 76 VYVFDGKPPSLKTAEIQRRKLGKKEATIKYEKAKASGDFESARKYAQQTTSMQDTMVEDS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K LL L G+P ++A ++ EA A + K+G+ YAVAS+D DS+ FGA + +R+ + RK
Sbjct: 136 KHLLDLFGIPYIQANADGEATAAHMNKTGKAYAVASQDYDSILFGAKKLVRNFTNSGRRK 195
Query: 203 IP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKL 250
+P ++ ++ K L+ L +T +Q ID+ IL G D+ D IG +TALK+
Sbjct: 196 LPNRNTYVDIEPEIISYQ--KSLDALGITGEQIIDIGILIGTDFNPDGFDRIGPKTALKM 253
Query: 251 IRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL-QIKWSAPDEEGLI 309
I+++G LE+I + + Q+ E Y++ R++F + TD + +I++ D G++
Sbjct: 254 IKEYGK----LEDIPKIQEQL-EQIDYEQIRKIFLQ----TDMPDIGKIEFKDTDYSGIV 304
Query: 310 NFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
++L +E F+ +RV ++ ++K + K S L+ +F
Sbjct: 305 DYLANERSFSQERVQASLNRLKRSLEKRSH-TLDQWF 340
>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
Length = 304
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAE 64
Query: 119 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN +++K+++ ++K++ + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GNIKTSELKKYAQMSIKLSNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 227
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 228 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLN 242
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 342
P+VV +E L++ + D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--ADCDGNKILDILVKIHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 343 ESFF 346
+ +F
Sbjct: 301 DQWF 304
>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
Length = 304
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTE 64
Query: 119 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
G+ +++K+++ ++++T + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GSIKTSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 227
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLIRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 228 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF +
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLK 242
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 342
P+VV +E L++ D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--VDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 343 ESFF 346
+ +F
Sbjct: 301 DQWF 304
>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 304
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTE 64
Query: 119 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
G+ +++K+++ ++++T + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GSIKTSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 227
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 228 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 286
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF +
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLK 242
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 342
P+VV +E L++ D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--VDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 343 ESFF 346
+ +F
Sbjct: 301 DQWF 304
>gi|435850378|ref|YP_007311964.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661008|gb|AGB48434.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 338
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 172/310 (55%), Gaps = 18/310 (5%)
Query: 31 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP 90
+A+DA ++YQFL ++ + L + G +TSHL G+ R L+E G+KP++VFDG+P
Sbjct: 24 VAVDAYNTLYQFLSIIRQRDGTPLKDSRGNITSHLSGILYRMTSLMEEGIKPVFVFDGKP 83
Query: 91 PDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMG 150
LK + + KR + R AT EA G E+ +++ + +VT + +D ++LL MG
Sbjct: 84 SHLKARTIEKRTADREKATIKWEEAKSKGLAEEAYMYAQASSRVTHEIVEDSRKLLVAMG 143
Query: 151 VPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF-- 208
+P V+APSE E+Q A + K G VAS+D DSL FGA +R+L RK+P
Sbjct: 144 IPWVDAPSEGESQAAHMVKRGDANYVASQDYDSLLFGASFVVRNLTITGKRKLPKKNIFV 203
Query: 209 -------EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
E+ + L EL + Q I++ + G DY + IG + ALKLI++H SIE +L
Sbjct: 204 DVKPEIMELGENLAELEIDQSQLIEIALCVGTDYNRGLEKIGPKKALKLIKEHRSIEKVL 263
Query: 262 ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
+ + Q ED QE + LF P V + +KW PD + ++ FL + F+ +
Sbjct: 264 QAVG----QNIED--LQEIKDLFLNPSVT---DNYTLKWKKPDTDAIVEFLCQGHDFSKE 314
Query: 322 RVTKAIEKIK 331
RV KA E+++
Sbjct: 315 RVIKACERLE 324
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 182/320 (56%), Gaps = 9/320 (2%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
++E + G+ +A+DA ++YQFL ++ + L + +G +TSHL G+ RT L+E
Sbjct: 11 LRETSLGALAGKIVAVDAYNTLYQFLSIIRQPDGTPLRDSSGRITSHLSGLIYRTTNLME 70
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
AG+K ++VFDG+P +LK + R +R A EA + ED K+++ + ++
Sbjct: 71 AGLKLVFVFDGKPSELKADVIKARSERREAAMQKWEEA-KVLFPEDAFKYAQASARIDAT 129
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
D K LL LMG+P V+APSE EAQ A + ++G V+S+D DSL FGAP +R+L
Sbjct: 130 IVADAKTLLTLMGIPYVQAPSEGEAQAAYMVQNGDAELVSSQDYDSLLFGAPITIRNLSA 189
Query: 198 PSSRKIPVMEFEVAKILEELN-LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 256
P RK +E K LE+ + ++ ID+ IL G D+ + I+G+G + ALKLI++H S
Sbjct: 190 P--RKKAKLELVELKALEDTQGIIREELIDIAILVGTDFNEGIKGVGVKRALKLIKKHHS 247
Query: 257 IETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
IE I+ + E+ Y+ R LF P+ VTD +L KW D + L +
Sbjct: 248 IEKIISQAAIDTSAGIEN--YELVRELFLHPD-VTDSYEL--KWGTLDAGKIKELLCEVH 302
Query: 317 GFNSDRVTKAIEKIKAAKNK 336
F+ +RV+KA+EKI K K
Sbjct: 303 DFSEERVSKALEKILIPKMK 322
>gi|386001444|ref|YP_005919743.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
gi|357209500|gb|AET64120.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
Length = 336
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 188/335 (56%), Gaps = 23/335 (6%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
+ E G+ IA+DA ++YQFL ++ + L + +G TSHL G+ R LLEAG K
Sbjct: 15 ELEELAGKLIAVDAFNTLYQFLSIIRQQDGTPLRDGSGRTTSHLSGILYRMTNLLEAGAK 74
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
++VFDG+PP K++ L +R R+ A + A E G D K+++ ++ + D
Sbjct: 75 VVFVFDGEPPRFKRETLDQRAETRSRAEEMWQRAKEEGL--DGFKYAQAASRLEDEMIAD 132
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
RLL+ MG+P V+APSE EAQ A + G V V S+D D+L FGAPR +R++ R
Sbjct: 133 AMRLLEAMGIPAVQAPSEGEAQAAFMAIKGDVDLVGSQDYDALLFGAPRVVRNMAITGKR 192
Query: 202 KIP-------VMEFEVAKILEE---LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
K+P VM EV + EE L + Q +++ I+ G DY + ++ +G +TALKLI
Sbjct: 193 KLPGKNVYVEVMP-EVISLDEELLRLGIARRQLVEIGIMCGTDYNEGLKRVGPKTALKLI 251
Query: 252 RQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINF 311
++HG++E +LE R + ED E R LF +P V D +I+ PD E ++ F
Sbjct: 252 KEHGNLEGVLEA----RGETIED--AAEIRDLFLDPPVTED---YKIETKRPDPEKILAF 302
Query: 312 LVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
L E F+ +RV KA++++ A K Q L+ +F
Sbjct: 303 LCDERDFSQERVEKAVKRLMEAV-KVGQSTLDKWF 336
>gi|451927433|gb|AGF85311.1| endonuclease of the XPG family [Moumouvirus goulette]
Length = 431
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 200/358 (55%), Gaps = 31/358 (8%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL KL+ D +++ KF + G K+++D S+ I+Q +I + G +M TN G
Sbjct: 1 MGIKGLPKLIRDITGNYAVRSYKFSKFHGMKVSVDMSLLIHQTVIAMRSNGKDM-TNRKG 59
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TSHL G+ + + L+ GM PI VFDG+ PD+K + + R SK+ DA + E ++
Sbjct: 60 ELTSHLYGILYKMLVFLQNGMTPICVFDGKAPDIKNKTVDLRRSKK-DAAEKKLEVLDDS 118
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----KSGQVYA 175
E+ K K+T +K+ + + LL LMG+P + AP EA+ C+ L ++G+ Y
Sbjct: 119 EDEEYIKNFKQTFTPSKRDIIEAQILLDLMGIPYIIAPGEADVVCSWLAARRDENGKRYV 178
Query: 176 --VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
V S+D D L GAP + ++ S+ V + K L + LTM QF DLC+L GC
Sbjct: 179 KGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDLCVLLGC 238
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRER-----------YQIPE--------- 273
DYCD+I+G+G +TA I++ GS+E ++ ++++R + + +
Sbjct: 239 DYCDNIKGVGPKTAYTKIKECGSLEEVINMVHKKREGDSDSDDEQTFNLTDNDKCMIEAR 298
Query: 274 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
++ Y +L K + + +EQL+++ +E L++F+ ++ F+ R+ A++++K
Sbjct: 299 NYFYTALDKLDKSKDFILTDEQLELRKFQYEE--LMDFMCVKHDFDVIRIQTALDRLK 354
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 174/322 (54%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A+DA ++YQFL ++ + L N AG +TSHL G+ RT+ LE G++P++VFDG+PP
Sbjct: 26 ALDAHNALYQFLSIIRQPDGTPLMNGAGRITSHLSGILFRTVNFLEKGIRPVFVFDGKPP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
+ K++ + +R RA A + A+ G+ E+ K + + ++ + LL L+G+
Sbjct: 86 EFKQETINERREHRARADEAWKTALREGDMEEAYKQASASARIDSHTIASSRELLDLLGI 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV- 210
P V+APSE EAQ A + + G+V S+D DSL FG+P +R+L RK V
Sbjct: 146 PWVQAPSEGEAQAAYMARQGKVTYAVSQDYDSLLFGSPVLVRNLTVSGRRKTRGRTITVN 205
Query: 211 ------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
+ L+ L +T +Q + + IL G D+ IRG+GG+TALK++R +G E+++
Sbjct: 206 PERIVLSSFLDRLGVTREQLVKIGILVGTDFNPGIRGVGGKTALKIVR-NGEFESVIAEK 264
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
+ P R F P V D ++W PD EG++ L F+ +RV
Sbjct: 265 QPDFNPAP-------IRDFFLNPPVTDD---YTLEWRTPDVEGVVEMLCGRYDFSEERVR 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
A+ K+ K++Q L+++F
Sbjct: 315 SALAKVSV---KATQKTLDAWF 333
>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
Length = 339
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 182/329 (55%), Gaps = 20/329 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G ++IDA IYQFL + E L +E G +TSHL G+F RT LLE +KP+Y FD
Sbjct: 21 GITVSIDAFNIIYQFLSSIRGEDGEPLKDEHGNITSHLSGIFYRTATLLENNIKPVYSFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+P LK + L +R + + +L A+E + E I+ S R +T + K+LL
Sbjct: 81 GKPYRLKDETLKERKAIKEKNIAELNLAMENKDAEKIKTLSSRINYITADIVSESKKLLD 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---- 203
+MGVP V+APSE EAQ + + K G V +V S+D D L GA R LR+ R+I
Sbjct: 141 MMGVPWVQAPSEGEAQASYMSKVGAVDSVISQDYDCLLLGARRVLRNFTMYGRRRISGTG 200
Query: 204 ------PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSI 257
P + ++ + L+ L +T DQ I + IL G D+ IRGIG +T L LI+++G I
Sbjct: 201 KFINITPEI-IDLKENLDNLGITQDQLIGIGILVGTDFNPGIRGIGAKTGLSLIKKYGDI 259
Query: 258 ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
E++L+ N+ + E + F P V E+ ++K++ P E +I +L +E+
Sbjct: 260 ESVLKQKNKTIDNL------DEIKEFFLNPPV---EDTGELKFAPPYREKIIEYLCAEHS 310
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ +R+ +++I+ + ++Q L+ +F
Sbjct: 311 FSENRINSILDRIEKNYSGANQSSLDKYF 339
>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-56-E4]
gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote KM3-86-C1]
Length = 341
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 189/337 (56%), Gaps = 23/337 (6%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
ES+ + IAIDA +IYQFL ++ LT+ G VTSHL G+ R + L G+KP
Sbjct: 16 LESFSSKIIAIDAYNAIYQFLAIIRGPDGLHLTDSKGRVTSHLTGLLYRNVNFLSMGIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
+YVFDG+PP LK E+ +R + +AT +A +G+ E K++++T + +D
Sbjct: 76 VYVFDGKPPSLKTAEIERRKLGKKEATIKYEKAKASGDLESARKYAQQTTSMQDTMVEDS 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K L L G+P V+A ++ EA A + K+G AVAS+D DS+ FGA + +R+ + RK
Sbjct: 136 KHFLDLFGIPYVQAKADGEATAAYMNKNGMADAVASQDFDSILFGAVKLIRNFTNSGRRK 195
Query: 203 IP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKL 250
+P ++ ++ K L+ L +T +Q ID+ IL G D+ D IG +TALK+
Sbjct: 196 LPNRNTYIDIEPEIISYQ--KSLDALGITGEQIIDIGILIGTDFNPDGFERIGPKTALKM 253
Query: 251 IRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310
I+++G +E I I E Q+ Y++ R++F + + +I++ D G+++
Sbjct: 254 IKEYGKLEDI-PKIQEELEQV----DYKQIRKIFLQADT---PNVGKIEFKDTDYSGIVD 305
Query: 311 FLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+L +E F+ +RV ++ ++K + K S L+ +FK
Sbjct: 306 YLSNERDFSEERVKASLNRLKKSIEKRSH-TLDQWFK 341
>gi|16082069|ref|NP_394495.1| flap endonuclease-1 [Thermoplasma acidophilum DSM 1728]
gi|28380022|sp|Q9HJD4.1|FEN_THEAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10640350|emb|CAC12164.1| DNA repair protein RAD2 related protein [Thermoplasma acidophilum]
Length = 336
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 186/338 (55%), Gaps = 26/338 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S+K+Q +++ +ID +YQ L V + L + G VTSHL G+F RTI LL
Sbjct: 15 SLKDQGNQTF-----SIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLL 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E ++P+YVFDG+P LK + +++R + A +L EA+E G +ED+ ++ R +T
Sbjct: 70 ENRIRPVYVFDGKPSPLKNRTISERQMMKEKAKAELEEAIERG-EEDLRQYYSRINYITP 128
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
Q DD K+LL MG+P V+APSE EAQ + + K V V S+D D L FGA + LR+
Sbjct: 129 QIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFA 187
Query: 197 DPSSRKIPVME-----FEVAKILEEL----NLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P + IL+E+ + DQ I + IL G D+ + I+GIG + A
Sbjct: 188 IYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKA 247
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L LI++ G I+++L++I + + E + FK P VV K+ PD +
Sbjct: 248 LALIKKEGDIKSVLKHIGKNIENLDEIIDF------FKNPPVV----DYDFKFRKPDTDA 297
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ +FL E+ F+ +R+ +E ++ S+Q RL+SF
Sbjct: 298 IEHFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 177/324 (54%), Gaps = 21/324 (6%)
Query: 30 KIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+ A D + ++YQFL + + L + G VTSHL G+F R +E G+ P+++FDG+
Sbjct: 24 RAAFDGNNALYQFLTTIRQPDGTPLMDSEGRVTSHLSGLFFRLTNFIEKGVSPVFIFDGK 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
PP+ K + +++R + + A L EA++AG+ + +++ + +V ++ D KRLL LM
Sbjct: 84 PPEFKNRTISERRAAKEQAEAGLKEALKAGDNQAAFSYARSSTRVDREIIDSSKRLLSLM 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
G+P ++APSE EAQ A + G V S+D DSL FGA + +R+L RKI
Sbjct: 144 GIPYLDAPSEGEAQAAFMVSEGIVDYSVSQDYDSLLFGAEKLVRNLTVSRKRKIRGRTIT 203
Query: 210 VA-------KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE 262
V ++L L +T +Q +++ IL G D+ IRGIG + ALK++R G+ E IL
Sbjct: 204 VNPETISLDEVLSGLEITREQLVEIGILIGTDFNSGIRGIGPKKALKIVRD-GTFENILS 262
Query: 263 NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322
+PE + Y + F P V +E + + A D G+ FL E+GF+ +R
Sbjct: 263 E------SMPE-FDYLPVKDFFLNPPV---KENVIPDYGAVDGAGVTEFLCVEHGFSKER 312
Query: 323 VTKAIEKIKAAKNKSSQGRLESFF 346
+ +EKI A + Q L+ +F
Sbjct: 313 INTVLEKINAG---AGQKTLDQWF 333
>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
Length = 336
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 183/338 (54%), Gaps = 26/338 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S+K+Q +++ +ID +YQ L V + L + G VTSHL G+F RTI LL
Sbjct: 15 SLKDQGNQTF-----SIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLL 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E ++P+YVFDG+P LK + +++R + A +L EA+E G +ED+ ++ R +T
Sbjct: 70 ENRIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELEEAIERG-EEDLRQYYSRINYITP 128
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
Q DD K+LL MG+P V+APSE EAQ + + K V V S+D D L FGA + LR+
Sbjct: 129 QIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFA 187
Query: 197 DPSSRKIPVME-----FEVAKILEEL----NLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P + IL+E+ + DQ I + IL G D+ + I+GIG + A
Sbjct: 188 IYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKA 247
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L LI++ G I+++L+ I + + E FK P VV K+ PD +
Sbjct: 248 LALIKKEGDIKSVLKRIGKNIENL------DEVIDFFKNPPVV----DYDFKFRKPDTDA 297
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ FL E+ F+ +R+ +E ++ S+Q RL+SF
Sbjct: 298 IERFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 174/330 (52%), Gaps = 23/330 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G +++DA IYQFL + E L + G +TSHL G+F RT LLE +KP+YVFD
Sbjct: 21 GSIVSVDAYNIIYQFLSSIRGDDGEPLKDSNGNITSHLSGIFYRTSNLLENNIKPVYVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G+P LK + L +R + L EA+ + + I S R +T ++ K LL
Sbjct: 81 GKPFHLKSETLRERSLIKEKNIMKLEEAIASNDDAKIRSLSSRINYITDDIVNESKTLLN 140
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL-------MDPSS 200
LMG+P V+APSE EAQ + + G V AV S+D D L FGA R LR+ + +S
Sbjct: 141 LMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDCLLFGAKRILRNFTVYGRRRIAGTS 200
Query: 201 RKIPVME--FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
R I V ++ + L L ++ +Q I + IL+G D+ ++GIG +TAL LI+++ I
Sbjct: 201 RTINVNPEIIDLNENLSNLGISREQLIYIGILTGTDFNPGVKGIGAKTALSLIKKYNDIY 260
Query: 259 TI--LENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
++ ++NI + E F P +IK++ PD +G+I+FL ++
Sbjct: 261 SVIKIKNIGIDN--------LDEIIEFFMNPP----HNDYEIKFNEPDFDGIIDFLCGKH 308
Query: 317 GFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ RV + +EKI K Q L+ FF
Sbjct: 309 NFSESRVNETLEKISRNYKKDHQSSLDRFF 338
>gi|294932999|ref|XP_002780547.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
gi|239890481|gb|EER12342.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
Length = 427
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 188/353 (53%), Gaps = 44/353 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL L AP +++E + E + G+++AIDAS+ +YQF + R +MLTN G
Sbjct: 1 MGIKGLYDFLKAQAPSAIRECRPEEFAGKRLAIDASIWMYQFKTKI-RYEDKMLTNSEGV 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL------AKRYSKRADATDDLA- 113
TS + G RTI++LE G++PI+VFDG PP +K L A +Y K A + +
Sbjct: 60 CTSGVHGFLHRTIKMLELGIRPIFVFDGHPPAMKYDCLKERRVQAMKYKKTASTPAETSM 119
Query: 114 EAVEAGNKE-----DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC 168
A EA ++ DI++ KR V LL ++ AP +AEA C LC
Sbjct: 120 PASEAPSRSVSMEIDIDRRLKRLVVHPP--------LLTHRASTLIAAP-QAEATCVRLC 170
Query: 169 KSGQVYAVASEDMDSLTFGAPRFLRHLMD------------PSSR--KIP---VMEFEVA 211
K G+ AV++ED+D++ FGAP L++L + P SR ++P V E
Sbjct: 171 KEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHRLEQNSSSRPYSRSKEVPNNYVREISRD 230
Query: 212 KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-YQ 270
+L+ L+LT + +L IL GCDYC SI IG A L+ +HGSI +I+ I + Y+
Sbjct: 231 VVLDSLSLTAEGLAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSITSIITAIEGSKTYK 290
Query: 271 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
P W Y+EA+ LF P + TDE + K + + L + LV +N RV
Sbjct: 291 APSGWAYREAKELFLNP-LTTDEIFPRSKMNV---DALADLLVHRLDYNPARV 339
>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
Length = 336
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 184/338 (54%), Gaps = 26/338 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S+K+Q +++ +ID +YQ L V + L + G VTSHL G+F RTI LL
Sbjct: 15 SLKDQGNQTF-----SIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLL 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E ++P+YVFDG+P LK + +++R + A +L EA+E G +ED+ ++ R +T
Sbjct: 70 ENKIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELEEAIERG-EEDLRQYYSRINYITP 128
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
Q +D K+LL MG+P V+APSE EAQ + + + V V S+D D L FGA + LR+
Sbjct: 129 QIVNDTKKLLDYMGIPYVDAPSEGEAQASYMTRK-NVDGVISQDYDCLLFGARKVLRNFA 187
Query: 197 DPSSRKIPVME-----FEVAKILEEL----NLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P + IL+E+ + DQ I + IL G D+ + I+GIG + A
Sbjct: 188 IYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKA 247
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L LI++ G I+ +L I ++ + E + FK P VV ++ PD +
Sbjct: 248 LALIKKEGDIKAVLRRIGKDIENLDEIIDF------FKNPPVV----DYDFRFGKPDTDA 297
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ +FL E+ F+ +R+ +E +K S+Q RL+SF
Sbjct: 298 IEHFLCDEHDFSRERIRDHLESLKKNNQASTQFRLDSF 335
>gi|47212193|emb|CAF90074.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 126/184 (68%), Gaps = 5/184 (2%)
Query: 201 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
+K+P+ EF ++IL+E+ LT +QFIDLCIL GCDYC +I+GIG + A+ LI+QHG IE I
Sbjct: 200 KKLPIQEFHFSRILQEIGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGCIEEI 259
Query: 261 LENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 320
LENI+ ++ PEDW Y+EAR LF PEVV D +++KWS PDE+GLI F+ +E F+
Sbjct: 260 LENIDSNKHPSPEDWLYKEARGLFLNPEVV-DCSTVELKWSQPDEDGLIQFMCNEKQFSE 318
Query: 321 DRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGG 380
DR+ +KI ++ S+QGRL+SFF + S+ KRKE E K + KK K G G
Sbjct: 319 DRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSS--KRKEAEG--KGSAKKKQKTGATPG 374
Query: 381 RKRK 384
+ RK
Sbjct: 375 KFRK 378
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 75/97 (77%), Gaps = 1/97 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ +YFGRKIAIDASM IYQFLI V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPGAIKEQDIRNYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNEDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE 97
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK E
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSE 96
>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Methanoregula boonei 6A8]
gi|166973700|sp|A7IA59.1|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
Length = 333
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A+DA+ ++YQFL ++ + L + G VTSHL G+ R + LE G+KP++VFDG+PP
Sbjct: 26 AVDANNTLYQFLTIIRQPDGTPLMDAKGRVTSHLSGILFRMVNFLEKGIKPVFVFDGKPP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
+LK++ A+R R +A + EAVE G++E+ + ++ +V + K LL L+G+
Sbjct: 86 ELKQETNAERKKLRDEAGEKYKEAVERGDEEEAYRQARSATRVDETIIATSKELLDLLGI 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV- 210
P V+APSE EAQ A + + G S+D D+L FGAP +R+L RKI V
Sbjct: 146 PYVQAPSEGEAQAAFMVQRGDARFAVSQDYDTLLFGAPLLMRNLTVSGKRKIRGRAVTVN 205
Query: 211 ------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
+++L L+LT +Q +++ IL G D+ G+G +TALK+++ G + + E
Sbjct: 206 PERLVLSEVLSGLSLTREQLVEVGILVGTDFNPGAAGVGAKTALKIVKSGGFAQKLAE-- 263
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
+ P P A F +P V T+ E + W P EG+ L F +RV
Sbjct: 264 -----KCPGFDPAPVA-DFFLKPPVTTEYE---LAWGHPCVEGIKKMLCDGYDFAPERVD 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
A+E+ A K+ Q LESFF
Sbjct: 315 AALERYSA---KAGQKTLESFF 333
>gi|330509049|ref|YP_004385477.1| FLAP endonuclease [Methanosaeta concilii GP6]
gi|328929857|gb|AEB69659.1| FLAP endonuclease [Methanosaeta concilii GP6]
Length = 339
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 187/331 (56%), Gaps = 27/331 (8%)
Query: 28 GRKIAIDASMSIYQFL-IVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVF 86
GR +AIDA ++YQFL I+ R GT ++ + G VTSHL G+ RT L+EAG+K +VF
Sbjct: 24 GRWVAIDAFNTLYQFLSIIRQRDGTPLMDRQ-GRVTSHLSGLLYRTTNLIEAGVKVAFVF 82
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DG+ P K LA+R R A EA AG ED K+++ ++ + +D +RL+
Sbjct: 83 DGEAPTFKAVTLAERSEIRDKAAWAWEEARAAG--EDGFKYAQAASRINSEIIEDGRRLI 140
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-- 204
MG+PV++APSE EAQ A + G V S+D DSL FGAP +R+L RK+P
Sbjct: 141 LAMGLPVIQAPSEGEAQAAYMAARGDVDYAGSQDYDSLLFGAPLVVRNLAITGKRKLPRK 200
Query: 205 ---------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
V+ EV L L +T Q +++ I+ G D+ + +G +TALKLIR+ G
Sbjct: 201 NIYVDVEPEVINLEVG--LANLGITHKQLVEIGIMCGTDFNSGLERVGPKTALKLIREKG 258
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+E+IL + R ED +++ R F P VTD+ ++ +K P+E +++FLV E
Sbjct: 259 DLESILAD----RDDKIED--FEKIREFFLHPP-VTDDYKIALKKPVPEE--IVSFLVDE 309
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
F+ +RV K ++++ +S Q L+ +F
Sbjct: 310 RDFDPERVEKTAKRLEEV-YRSGQSTLDHWF 339
>gi|441432364|ref|YP_007354406.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
gi|440383444|gb|AGC01970.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
Length = 431
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 200/358 (55%), Gaps = 31/358 (8%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL KL+ + +++ F + G K+++D S+ I+Q +I + G +M N G
Sbjct: 1 MGIKGLPKLIREITNGYAVRSYNFSKFHGMKVSVDMSLLIHQTVIAMRSNGKDM-KNRKG 59
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TSHL G+ + + L+ GM PI VFDG+ PD+K + + R SK+ A L + ++
Sbjct: 60 ELTSHLYGILYKMLVFLQNGMTPICVFDGKAPDIKNKTVDIRRSKKDAAEKKLEDLDDSE 119
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----KSGQVYA 175
++E I+ F K+T +K+ + + LL LMG+P + AP EA+ C+ L ++G Y
Sbjct: 120 DEEYIKNF-KQTFTPSKRDIQEAQILLDLMGIPYIVAPGEADVVCSWLAARRDENGDRYV 178
Query: 176 --VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
V S+D D L GAP + ++ S+ V + K L + LTM QF DLC+L GC
Sbjct: 179 KGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDLCVLLGC 238
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRER-----------YQIPE--------- 273
DYCD+I+GIG +TA I++ GS+E +++ ++++R + + E
Sbjct: 239 DYCDNIKGIGPKTAYNKIKECGSLEEVIKMVHKKREGDSDSDNEQTFDLTENDKCMIEAR 298
Query: 274 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331
++ Y +L K + + +EQL+++ +E L++F+ ++ F+ R+ A++++K
Sbjct: 299 NYFYTALDKLDKSKDFILTDEQLELRKFQYEE--LMDFMCVKHDFDVMRIQTALDRLK 354
>gi|308321602|gb|ADO27952.1| flap endonuclease 1-b [Ictalurus furcatus]
Length = 140
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/141 (63%), Positives = 111/141 (78%), Gaps = 1/141 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP +++EQ ++YFGRKIAIDASM IYQFLI V + G +L N+ GE
Sbjct: 1 MGIHGLAKLIADQAPTAIREQDIKNYFGRKIAIDASMCIYQFLIAVRQDGN-VLQNDDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR+L++G+KP+YVFDG+PP LK EL KR +RA+A LA+A E G
Sbjct: 60 TTSHLMGMFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLLAQAQETGE 119
Query: 121 KEDIEKFSKRTVKVTKQHNDD 141
+E+I+KFSKR VKVTKQHND+
Sbjct: 120 QENIDKFSKRLVKVTKQHNDE 140
>gi|424811751|ref|ZP_18236997.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757159|gb|EGQ40741.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 340
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 30/328 (9%)
Query: 29 RKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG 88
R +A+DA +YQFL ++ + L + G +TSHL G+F RT +LL++ ++P+YVFDG
Sbjct: 22 RVLAVDAMNVLYQFLSIIRQRDGTPLKDSDGNITSHLSGLFYRTTKLLDSNIRPVYVFDG 81
Query: 89 QPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSK--RTVKVTKQHNDDCKRLL 146
+ PDLK E A+R KR +A + + E G+ + E FSK ++ +VT D+ + LL
Sbjct: 82 EMPDLKATEAAQRREKREEAQKEWEKLKEEGDVD--EAFSKAMQSSRVTGDMIDESRELL 139
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM--------DP 198
MGVP V+APSE EAQ A + +G VY V S+D DSL FGA R +++L D
Sbjct: 140 DAMGVPYVDAPSEGEAQAARMAANGNVYGVGSQDWDSLLFGAERMVKNLTSRKKRSNRDG 199
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSI 257
SSR I + +L+ L L+ + + + +L G D+ D I G+G +TALKL+R++ S+
Sbjct: 200 SSRTISTELIRLEHVLDNLGLSRRELVWMGMLVGTDFNPDGIYGVGPKTALKLVRRNQSL 259
Query: 258 ETILENINRERYQIPEDW-----PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
E +L + DW PY+ K P + + D + + +
Sbjct: 260 EEVLS-------EDKVDWDSENDPYRIEDFFMKPP-----TNDANFSFGSVDADLVEEIM 307
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQG 340
+ +GF+ R+ +E++ A +G
Sbjct: 308 IETHGFSKKRIQSGLERLSNALEARQKG 335
>gi|435851449|ref|YP_007313035.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433662079|gb|AGB49505.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 341
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 175/312 (56%), Gaps = 15/312 (4%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
+E G+ IAIDA +IYQFL + + +LT+ +G TSHL G+F+RT +L +A +KP
Sbjct: 16 YEELAGKVIAIDAYNTIYQFLSAIRQKNGSLLTDASGNPTSHLTGLFSRTCKLRDANIKP 75
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
I++FDG+PP +K++ L KR + A + A E G+ E ++KF++ T +T +
Sbjct: 76 IFIFDGKPPQMKERTLEKRKECKQLAARNYEIAREGGDLEGMKKFAQGTSCITPHILKES 135
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
K+LL+LMG+P ++A SEAEAQ A + G V S+D D+ FGA +R+L RK
Sbjct: 136 KKLLELMGIPWMQAESEAEAQAAFMTLRGDADLVGSQDYDAFLFGAKNVVRNLGSTGKRK 195
Query: 203 IPVM---------EFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
+P +A L +LN+T +Q ID+ I G D+ + I +G +TALKLI +
Sbjct: 196 LPGKAAYVPKNPEHISLANSLGQLNITREQLIDVAICIGTDFNEGIHRVGPKTALKLILR 255
Query: 254 HGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
H I T+L E+ +I +E R F P V TD ++W P + L FLV
Sbjct: 256 HRDINTLLR---EEKKEINTCVSVEEIRDFFMNPPVTTD---YTLRWKKPRSDELFEFLV 309
Query: 314 SENGFNSDRVTK 325
++ F+ ++ K
Sbjct: 310 KKHSFSEKQIIK 321
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 182/341 (53%), Gaps = 32/341 (9%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S+K+Q + + AID +YQ L V + L + +G VTSHL G+F RT+ L+
Sbjct: 15 SLKDQANQVF-----AIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLV 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E G+KPI+VFDG+P LK + L R + A +L EA+ G +E+++++ R +T
Sbjct: 70 ENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRG-EENLKQYYSRINYITP 128
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
Q +D K LL MG+P V+APSE EAQ + + + V S+D D L FGA + LR+
Sbjct: 129 QIVNDTKELLTYMGIPYVDAPSEGEAQASYMTRK-DADGVISQDYDCLLFGAKKILRNFA 187
Query: 197 DPSSRKIP------------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 244
RK+P VM + ++L++ + DQ I++ IL G D+ + I+GIG
Sbjct: 188 IYGRRKVPRKNVYRTVYPEYVM---LDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGA 244
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+ AL LI++ G+I+ +L I + + E + FK P VV ++ + PD
Sbjct: 245 KKALALIKKEGNIKAVLNKIGKNIENLDEIIDF------FKNPPVV----DVKYVFGKPD 294
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
+ + FL + F+ DR+ + I NKS Q RL+SF
Sbjct: 295 PKKIEEFLCVVHDFSRDRILEHINTYVKYYNKSVQFRLDSF 335
>gi|355570852|ref|ZP_09042122.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
gi|354826134|gb|EHF10350.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
Length = 333
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 179/322 (55%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A+DA ++YQFL ++ + L ++ G VTSHL G+ RT +LE G++ ++++DG PP
Sbjct: 26 AVDAHNALYQFLSIIRQPDGTPLMDQRGRVTSHLSGILFRTANMLEKGIRTVWIYDGTPP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
K+ +A+R + R A + EA+ G+ E+ + ++ + ++ ++ ++L+ L+G+
Sbjct: 86 SFKQDTVAERRAVREKAGEKWKEALLRGDTEEAYRQARSSSRIDEEIIATSRQLITLLGL 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI-----PVM 206
P ++APSE EAQ A + G V S+D D+L FGAP +R+L RK+ +M
Sbjct: 146 PWIQAPSEGEAQAAYMVMRGDARYVVSQDYDTLLFGAPVLVRNLTVSGKRKVRGRTLAIM 205
Query: 207 --EFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
++ +L L ++ + I + +L G D+ IRG+G +TAL+++R +G E ++
Sbjct: 206 PERIVLSSVLTGLEISREDLIRVGLLVGTDFNPGIRGVGAKTALRMVR-NGEFEQVM--- 261
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
RER Q DW +E F +P V E+ + W PD EG++ L F+ +RV
Sbjct: 262 -RER-QPGVDW--EEIFHFFAKPPVT---EEYSLHWRPPDREGILRMLCDGFDFSPERVE 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
A+ +K A S Q L+S+F
Sbjct: 315 NALGGVKTA---SGQKTLDSWF 333
>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
Length = 328
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 179/334 (53%), Gaps = 30/334 (8%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S+K+Q +++ +ID +YQ L V + L + G VTSHL G+F RTI LL
Sbjct: 15 SLKDQSNQTF-----SIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLL 69
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E ++P+YVFDG+P LK + +++R + A +L EA+E G +ED+ ++ R +T
Sbjct: 70 ENKIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELEEAIERG-EEDLRQYYSRINYITP 128
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
Q DD K+LL MG+P ++APSE EAQ + + K V V S+D D L FGA + LR+
Sbjct: 129 QIVDDTKKLLDYMGIPYIDAPSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFA 187
Query: 197 DPSSRKIPVME-----FEVAKILEEL----NLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
RK+P + IL+E+ + DQ I + IL G D+ + I+GIG + A
Sbjct: 188 IYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKA 247
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 307
L LI++ G I+ +L I + + E + FK P VV K+ PD +
Sbjct: 248 LALIKKEGDIKAVLRRIGKNIENLDEIIDF------FKNPPVV----DYDFKFRKPDTDA 297
Query: 308 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+ +FL E+ F+ +R+ +E ++ K+ Q R
Sbjct: 298 IEHFLCDEHDFSRERIRDHLESLR----KNDQAR 327
>gi|374723540|gb|EHR75620.1| flap endonuclease-1 [uncultured marine group II euryarchaeote]
Length = 342
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 178/321 (55%), Gaps = 22/321 (6%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVV------GRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
S G+++ +DA ++ +QFL + G G L E G+V SHL G RT LL
Sbjct: 16 LNSLAGKRVGVDAFLTAFQFLTTMRDRSPQGDGGP--LRAENGKVVSHLMGFLNRTTTLL 73
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
AG+KP+YVFDG P+LK E+A+R ++R +A EA+ AG+ +K ++R + +
Sbjct: 74 AAGIKPVYVFDGTAPELKADEIAQRRARRVEAERIHKEALAAGDFPLAQKMAQRIMHYSP 133
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + K+LL L+GVP V+A +E E Q A + GQ+ VA++D D+L +G P +R+LM
Sbjct: 134 EMVAETKQLLDLLGVPWVDAKAEGEGQAAVMAAKGQLDVVATQDWDALLYGTPLLVRNLM 193
Query: 197 DPSS----RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
S R + + + ++L E LT Q IDL I+ G D+ IRGIG +T +KLI+
Sbjct: 194 SHGSKQHGRVVQAQKIILDEVLSENELTRAQLIDLAIMIGTDFHPGIRGIGPKTGMKLIK 253
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV--VTDEEQLQIKWSAPDEEGLIN 310
HG+IE I E ++ +PE E R +F + V D + ++ D +GLI
Sbjct: 254 AHGTIEAICEAKEKD---VPER--LDEIRAIFHDHPANEVADAD---LEPGQVDTKGLIQ 305
Query: 311 FLVSENGFNSDRVTKAIEKIK 331
FL E F+ R+ A +K++
Sbjct: 306 FLQVERQFSQRRMDNAFDKLR 326
>gi|448825476|ref|YP_007418407.1| putative endonuclease of the xpg family [Megavirus lba]
gi|444236661|gb|AGD92431.1| putative endonuclease of the xpg family [Megavirus lba]
Length = 443
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 47/383 (12%)
Query: 1 MGIKGLTKLLADNAPKS-MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL KL+ + S MK +F + GR +A+D S+ I+Q +I + G +M TN+ G
Sbjct: 1 MGIKGLPKLIKEITNGSAMKSIQFGKFDGR-VAVDMSLLIHQTVIAMRSNGRDM-TNQKG 58
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TSHL G+ + + L+ GM PI VFDG+ P++K + + R S++ A L ++
Sbjct: 59 ELTSHLYGILYKMLTFLQNGMTPICVFDGKAPEIKNKTVDIRRSRKDAAEKKLESLEDSE 118
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----------- 168
++E I+ F K+T +K+ + + LL LMG+P + +P EA+ C+ L
Sbjct: 119 DEEYIKNF-KQTFTPSKKDIQEAQILLDLMGIPYIVSPGEADVVCSWLASRVDPNYIDPE 177
Query: 169 ---KSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFI 225
K V V S+D D L GAP + ++ ++ V + L+ LTM QF
Sbjct: 178 TGKKKRYVTGVCSDDSDMLALGAPYLFKDMLKFMTKNKDVTVISLRTTLKSTGLTMRQFT 237
Query: 226 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN---------------------- 263
DLC+L GCDYCD+I+GIG +TA K+I+Q GS+E +++N
Sbjct: 238 DLCVLLGCDYCDNIKGIGPKTAYKMIKQFGSLENVIKNDHEKKDGSNDSGSDSDSDSDFN 297
Query: 264 -----INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
IN + ++ L K + V ++QL+++ +E L++F+ ++ F
Sbjct: 298 DIKLTINEKCMIEARNYFLNAVDNLDKSKDFVVTQDQLELRKYQYEE--LMDFMCVKHDF 355
Query: 319 NSDRVTKAIEKIKAAKNKSSQGR 341
+ R+ A++++K +K + R
Sbjct: 356 DVIRIQTALDRLKMYHDKLNITR 378
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 171/322 (53%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A+D + ++YQFL + + L + G VTSHL G+F R LE +KP+++FDG PP
Sbjct: 26 AVDGNNALYQFLTTIRQPDGTPLMDREGRVTSHLSGIFFRITTFLENNIKPVFIFDGAPP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
+ K + L +R ++A A +AVE G+ + ++ +V + K LL MG+
Sbjct: 86 EFKSETLEQRRERKAVAETAYRQAVEVGDTVSAFRHARAATRVDETIIAGTKELLGYMGI 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI--PVM--- 206
P ++A SE EAQ A + +G V S+D DSL FGAPR +R+L RK+ V+
Sbjct: 146 PCIDAMSEGEAQAAYMAMNGDVRYSISQDYDSLLFGAPRLVRNLTVSRKRKVRGRVITVN 205
Query: 207 --EFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
E ++ +L+ +T ++ I++ IL G D+ ++G+G +TALK+++ ET EN
Sbjct: 206 PEEILLSDLLDGKGITREELIEIGILVGTDFNSGVKGVGAKTALKIVKSGKFYETFEEN- 264
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
PE P + F P V + + WS D EG++++L + F+ DRV
Sbjct: 265 ------EPEFDP-APVKEFFLNPPV---SKGYSLSWSHVDREGVVSYLCGRHDFSEDRVN 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
+E+I KS Q L+S+F
Sbjct: 315 SVLERIGV---KSGQKTLDSWF 333
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 20/320 (6%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
G+ IAIDA I+QFL + LT+ G+VT+HL G+F R++ +LE +KP++VFD
Sbjct: 21 GKLIAIDAFNWIFQFLTTIRLADGSYLTDSKGKVTTHLNGLFYRSVSMLENRIKPVFVFD 80
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G P KK+ L +R + +A + + A A E+ + +R ++ D K LL
Sbjct: 81 GAAPKFKKETLKEREKTKEEAIEKMQNASTA---EEKAMYMRRLSRIDDYIIDSSKELLS 137
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
+G+P V+AP+E EAQ A L G+V+A AS+D D+L FGA + +R+L + RKI
Sbjct: 138 YLGIPYVQAPAEGEAQAAQLNMQGKVFAAASQDYDTLLFGAKKVVRNLNITNKRKISGKG 197
Query: 208 FEVAKI---------LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
+ + L L +T +Q I L + G DY + GIG + ALK++++ E
Sbjct: 198 ITTSVLPELINANPNLARLGITREQLITLSLFVGTDYNKGVDGIGPKKALKIVKEKSREE 257
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
R Y I E + Y F P+++ E L K ++E L++FL E+ F
Sbjct: 258 IFASYDFRSDYSIKEIYDY------FISPKIIEVNEDLNPK--KLNKEKLVSFLCEEHDF 309
Query: 319 NSDRVTKAIEKIKAAKNKSS 338
+ +RV + +++IK +N S
Sbjct: 310 SKERVNQYLDRIKLEENSLS 329
>gi|363539876|ref|YP_004894560.1| mg509 gene product [Megavirus chiliensis]
gi|350611041|gb|AEQ32485.1| putative endonuclease of the xpg family [Megavirus chiliensis]
Length = 443
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 47/383 (12%)
Query: 1 MGIKGLTKLLADNAPKS-MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL KL+ + S MK +F + GR +A+D S+ I+Q +I + G +M TN+ G
Sbjct: 1 MGIKGLPKLIKEITNGSAMKSIQFGKFDGR-VAVDMSLLIHQTVIAMRSNGRDM-TNQKG 58
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TSHL G+ + + L+ GM PI VFDG+ P++K + + R S++ A L ++
Sbjct: 59 ELTSHLYGILYKMLTFLQNGMTPICVFDGKAPEIKNKTVDIRRSRKDAAEKKLESLEDSE 118
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----------- 168
++E I+ F K+T +K+ + + LL LMG+P + +P EA+ C+ L
Sbjct: 119 DEEYIKNF-KQTFTPSKKDIQEAQILLDLMGIPYIVSPGEADVVCSWLASRVDPNYIDPE 177
Query: 169 ---KSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFI 225
K V V S+D D L GAP + ++ ++ V + L+ LTM QF
Sbjct: 178 TGKKKRYVTGVCSDDSDMLALGAPYLFKDMLKFMTKNKDVTVISLRTTLKSTGLTMRQFT 237
Query: 226 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN---------------------- 263
DLC+L GCDYCD+I+GIG +TA K+I+Q GS+E +++N
Sbjct: 238 DLCVLLGCDYCDNIKGIGPKTAYKMIKQLGSLENVIKNDHEKKDGSNDSDSDSDSDSDFN 297
Query: 264 -----INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
IN + ++ L K + V ++QL+++ +E L++F+ ++ F
Sbjct: 298 DIKLTINEKCMIEARNYFLNAVDNLDKSKDFVVTQDQLELRKYQYEE--LMDFMCVKHDF 355
Query: 319 NSDRVTKAIEKIKAAKNKSSQGR 341
+ R+ A++++K +K + R
Sbjct: 356 DVIRIQTALDRLKMYHDKLNITR 378
>gi|56756631|gb|AAW26488.1| SJCHGC07325 protein [Schistosoma japonicum]
Length = 188
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 122/180 (67%), Gaps = 7/180 (3%)
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
+ EF +A +LE L+LTMDQF+DLCIL GCDY D+IRGIG + AL L+ ++ SI+ +L+NI
Sbjct: 3 IQEFNLASVLEGLSLTMDQFVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCVLKNI 62
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
++ +Y +P DWPY++A++LF PE VTD +++KW PDEEGL+ FL ++GFN +R+
Sbjct: 63 DKSKYPVPNDWPYEDAKKLFLNPE-VTDPSLIELKWDEPDEEGLVEFLCHKHGFNEERIR 121
Query: 325 KAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
+K+ AKN ++QGR+++FF TS P K + P N K+ + RKRK
Sbjct: 122 NGAKKLFKAKNTTTQGRIDNFF-----TSIPSKNNLLISNPNINCN-KTPSNTMSDRKRK 175
>gi|72160212|gb|AAZ66769.1| flap endonuclease FEN-1a [Zea mays]
Length = 90
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 88/90 (97%)
Query: 182 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241
DSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GCDYCDSI+G
Sbjct: 1 DSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKG 60
Query: 242 IGGQTALKLIRQHGSIETILENINRERYQI 271
IGGQTALKLIRQHGSIE+ILEN+N++RY+I
Sbjct: 61 IGGQTALKLIRQHGSIESILENLNKDRYRI 90
>gi|371944946|gb|AEX62767.1| putative endonuclease of the XPG family [Moumouvirus Monve]
Length = 343
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 189/339 (55%), Gaps = 31/339 (9%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL KL+ + +++ F + G K+++D S+ I+Q +I + G +M N G
Sbjct: 1 MGIKGLPKLIREITNGYAVRSYNFSKFHGMKVSVDMSLLIHQTVIAMRSNGKDM-KNRKG 59
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TSHL G+ + + L+ GM PI VFDG+ PD+K + + R SK+ A L + ++
Sbjct: 60 ELTSHLYGILYKMLVFLQNGMTPICVFDGKAPDIKNKTVDIRRSKKDAAEKKLEDLDDSE 119
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----KSGQVYA 175
++E I+ F K+T +K+ + + LL LMG+P + AP EA+ C+ L ++G Y
Sbjct: 120 DEEYIKNF-KQTFTPSKRDIQEAQILLDLMGIPYIVAPGEADVVCSWLAARRDENGDRYV 178
Query: 176 --VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
V S+D D L GAP + ++ S+ V + K L + LTM QF DLC+L GC
Sbjct: 179 KGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDLCVLLGC 238
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRER-----------YQIPE--------- 273
DYCD+I+GIG +TA I+++GS+E +++ ++++R + + E
Sbjct: 239 DYCDNIKGIGPKTAYNKIKEYGSLEEVIKMVHKKREGDSDSDNEQTFDLTENDKCMIEAR 298
Query: 274 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
++ Y +L K + + +EQL+++ +E L++F+
Sbjct: 299 NYFYTALDKLDKSKDFILTDEQLELRKFQYEE--LMDFM 335
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 177/322 (54%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
AIDA ++YQFL ++ + L +++G +TSHL G+F RT L G++P+++FDG+ P
Sbjct: 26 AIDAFNALYQFLSIIRQPDGTPLMDDSGRITSHLSGIFFRTANFLTQGIRPVFIFDGKSP 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
++K + + +R R ++ + +A + G+ +++ + + ++L++LMG+
Sbjct: 86 EMKGRTIQERRDVREESKEKWDQAKKEGDLAGAFRYAMSSTAIDAYILSSARQLIQLMGL 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV- 210
PVV+APSE EAQ A + G V S+D D+L FG P +R+L R++ + V
Sbjct: 146 PVVDAPSEGEAQGAYMVLKGDADYVVSQDYDTLLFGTPVLVRNLTISGKRRLHGRQITVQ 205
Query: 211 ------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
+ +L L++T +Q I++ IL+G D+ IRGIG +T LK I+ G ++I+
Sbjct: 206 PERIVLSDVLSTLDITREQLIEIAILTGTDFNPGIRGIGAKTGLKKIKS-GEFDSII--- 261
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
R ++P D+ + R F P VTD L D +G+ FL E+GF+ DRV
Sbjct: 262 ---REKLP-DFDPEPVRSFFLNPP-VTDSYTLDP--GRIDRDGIRAFLCGEHGFSQDRVD 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
++KI K Q LES+F
Sbjct: 315 PVLDKI---SKKEKQKTLESWF 333
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 181/327 (55%), Gaps = 27/327 (8%)
Query: 16 KSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+S+K Q+ G+ IAIDA I+QFL + LT+ G VT+HL G+F R I +
Sbjct: 12 RSIKMQELS---GKTIAIDAFNWIFQFLTTIRLADGSYLTDSKGRVTTHLNGIFYRCISM 68
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
LE G+ P++VFDG+ P KK+ L +R S + +A +A A +E+ + +R ++
Sbjct: 69 LENGINPVFVFDGKAPRFKKETLKERESIKEEAR---IKAENAVTQEERAMYMRRLSRID 125
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
K LL MGV V+AP+E EAQ A + G VYA AS+D D++ FGA R +R+L
Sbjct: 126 DYIVASSKELLDYMGVKYVQAPAEGEAQAAWMSGKGLVYAAASQDYDTILFGAKRVIRNL 185
Query: 196 MDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 244
+ RKI ++E + L++L + ++ I + + +G DY + GIG
Sbjct: 186 NINNKRKISRKGITVQVNPEIIESDYN--LKKLGVDREKMIVVALFTGTDYNKGVDGIGP 243
Query: 245 QTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
+ AL L++++ S+E +LE+ Y D+ +E + F P+ V E Q +K +
Sbjct: 244 RKALNLVKEN-SVEKLLES-----YDFRSDYDIKEVFQYFLTPDTV--EVQNDLKLGSMQ 295
Query: 305 EEGLINFLVSENGFNSDRVTKAIEKIK 331
+E L+ F+ E+GF+ +R++ ++++IK
Sbjct: 296 KEKLVEFMCKEHGFSEERMSASLQRIK 322
>gi|432330136|ref|YP_007248279.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
gi|432136845|gb|AGB01772.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
Length = 333
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 167/322 (51%), Gaps = 21/322 (6%)
Query: 32 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP 91
A+DA+ ++YQFL ++ + L + G VTSHL G+ R + G+KP++VFDG+P
Sbjct: 26 AVDANNTLYQFLTIIRQPDGTPLMDRQGRVTSHLSGILFRISNFMAKGIKPVFVFDGKPT 85
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
LK+ + +R R A + EAVE G++ + K ++ + +V + LL LMG+
Sbjct: 86 QLKQATIEERRKLRDTAGEKWREAVERGDEAEAYKQARSSTRVDDTIIRTSRELLGLMGI 145
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV- 210
PVV+AP E EAQ A + G V S+D D+L FGAP +R+L RKI + V
Sbjct: 146 PVVQAPGEGEAQAAFMVARGDCLYVISQDYDTLLFGAPTLVRNLTVSGKRKIRGRQITVN 205
Query: 211 ------AKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
A+ L L LT +Q I++ IL G D+ + G+G +T LK++ Q G L
Sbjct: 206 PERIVLAETLAGLKLTREQLIEIGILVGTDFNPGVEGVGAKTGLKIV-QKGEFAAKL--- 261
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
+E+ + P E +F +P V T + + PD EG+ L F+ +RV
Sbjct: 262 -KEKQPDFDPAPVME---MFLKPPVTT---EYSVAAGHPDAEGIKKMLCDGYDFSEERVD 314
Query: 325 KAIEKIKAAKNKSSQGRLESFF 346
KA+E K+ Q LES+F
Sbjct: 315 KALEGFSV---KAGQKTLESWF 333
>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
gi|166973701|sp|A2SQC6.1|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
Length = 333
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 183/353 (51%), Gaps = 27/353 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L LLA+ KE G A+DA ++YQFL + + L + G
Sbjct: 1 MGV-ALRPLLAE-----YKESPGWDGLGGIAAVDAFNALYQFLSGIRQADGAPLMDGQGR 54
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSHL G+ R L+E + PIYVFDG+PP K L+KR R +A D +A++ G+
Sbjct: 55 ITSHLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWEKALKEGD 114
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E K++ + K+ D K LL +G+ ++AP E EAQ + + K+G V S+D
Sbjct: 115 EESARKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDVTYAVSQD 174
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI--PVME-----FEVAKILEELNLTMDQFIDLCILSGC 233
DSL FGAP +R++ ++I V+ + ++L L++T ++ I + +L G
Sbjct: 175 YDSLLFGAPDLVRNITVSGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQIALLIGT 234
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 293
DY + G+G +TA+K++R+ + I E+ N P+ + F +P V E
Sbjct: 235 DYNSGVPGVGPKTAVKIVREGKFYDRIGESENAAE---PD-----QLIGYFMDPPV---E 283
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346
I+ +PD + +I+ L E+GF +RV +E++ A K Q L+++F
Sbjct: 284 RSYNIESRSPDPDRVIDLLCGEHGFTQERVEAGLERLGA---KKGQATLDAWF 333
>gi|359417810|ref|ZP_09209878.1| flap endonuclease-1, partial [Candidatus Haloredivivus sp. G17]
gi|358031834|gb|EHK00670.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 296
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 171/300 (57%), Gaps = 16/300 (5%)
Query: 54 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
L + G++TSHL G+F R I LLE ++P+YVFDG PDLK++E +R KR +A +
Sbjct: 4 LKDSDGDITSHLSGLFYRNINLLEKDIRPVYVFDGAIPDLKQKETTERRKKREEAKKEWE 63
Query: 114 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
+ E G + + ++ K+T ++ K LL MG+P ++A SE EAQ A + G V
Sbjct: 64 KLKEEGKISEAYSKATQSSKLTGDMIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDV 123
Query: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRK--------IPVMEFEVAKILEELNLTMDQFI 225
YAV S+D D + FGA R +R+L +RK + E+ K+LEEL+L+ +Q +
Sbjct: 124 YAVGSQDWDCMLFGADRMVRNLTSRKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLV 183
Query: 226 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 285
L ++ G D+ D I GIG + L++++ H S+E+++E+ E+++ D + F
Sbjct: 184 MLGMVMGTDFNDGIHGIGPKKGLEMVKDHESLESLMED---EKFEWGSDNSPEAVYDFFI 240
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 345
P V E++ + +PD + + + LV ++ F+ DR++ ++ ++ A +S Q L SF
Sbjct: 241 NPPV----EKVDFSFESPDNDRISDILVDQHDFSEDRISSKLKDLEKAL-ESRQSGLGSF 295
>gi|335433586|ref|ZP_08558406.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
gi|334898592|gb|EGM36696.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
Length = 326
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 27/324 (8%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
+K+ FE G +A+DA +Y++L V T ++ T GE ++L G+ +
Sbjct: 12 IKDVSFEELGGSIVAVDAHNWLYRYLTTTVKWTSDDIYTTADGEEVANLVGVIQGLPKFF 71
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
EA + P++VFDG DLK E+ +R +R +DL A E G+ + + RT ++T
Sbjct: 72 EADVTPVFVFDGAVTDLKDDEVKRRREQREQYEEDLEAAREEGDAIQVARLESRTQRLTD 131
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ ++LL L+ VP+V+AP+E EAQ A + + G V +ED D+L FGAP LR L
Sbjct: 132 VIIETTRKLLGLLDVPIVDAPAEGEAQAAYMARRGDADYVGTEDYDALLFGAPYTLRQLT 191
Query: 197 DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 256
SS +M+FE L E +L+ +Q +D+ +L G D+ + +RG G +TA+K IR+HG
Sbjct: 192 --SSGDPELMDFEAT--LAEHDLSWEQLVDVALLCGTDFNEGVRGYGPKTAVKAIREHGD 247
Query: 257 I-------ETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
+ + +EN +R R LF +P VTDE L+ PD
Sbjct: 248 LWGVSEAEDVYVENADR-------------IRDLFLDP-AVTDEYSLETT-IEPDLAAAR 292
Query: 310 NFLVSENGFNSDRVTKAIEKIKAA 333
F+ + ++D V + E+I+++
Sbjct: 293 AFVTDQWEVDTDEVARGFERIESS 316
>gi|448689147|ref|ZP_21694884.1| flap endonuclease-1 [Haloarcula japonica DSM 6131]
gi|445779017|gb|EMA29959.1| flap endonuclease-1 [Haloarcula japonica DSM 6131]
Length = 326
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 165/317 (52%), Gaps = 17/317 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F+ G +A+DA +Y++L V T T + GE ++L G+ +
Sbjct: 11 ALSDVSFDELGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTDDGEEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E M P++VFDG DLK E+ KR +R +L EA EAG+ + K RT ++T
Sbjct: 71 FEHDMTPVFVFDGAVTDLKDDEVEKRREQREKYESELEEAREAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+FE LE +LT +Q +D IL G D+ + I GIG +TA+K + +H
Sbjct: 191 ---TSKGDPELMDFEAT--LERHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKELHEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLINFLV 313
G + T+LE N R LF +P V D E I S PD + F+
Sbjct: 246 GDLYTVLEARNEHIDHA------DRIRNLFLDPAVTDDYE---IPDSIEPDLDAARAFVT 296
Query: 314 SENGFNSDRVTKAIEKI 330
+ ++D V + E+I
Sbjct: 297 DQWEVDADEVARGFERI 313
>gi|433637770|ref|YP_007283530.1| flap structure-specific endonuclease [Halovivax ruber XH-70]
gi|433289574|gb|AGB15397.1| flap structure-specific endonuclease [Halovivax ruber XH-70]
Length = 326
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 173/327 (52%), Gaps = 15/327 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S++ F+ G +A+DA +Y++L V T + + T G ++L GM +
Sbjct: 11 SIESIPFDELEGSVVAVDAHNWLYRYLTTTVKWTNSSIYTTADGTEVANLVGMVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG P +LK E+ R +R + L A E G++ I + T ++T
Sbjct: 71 FEHDIVPVMVFDGGPSELKTDEIESRREQRESYEEQLEVAREEGDQVAIAQLESYTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VPVVEAP+E EAQ A + ++G V SED D+L FG+PR LR L
Sbjct: 131 PTIQETSRELLRLLDVPVVEAPAEGEAQAANIVRNGDADYVGSEDYDALLFGSPRTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ +LT++Q ID+ I+ G D+ D + GIG +TAL LI +HG
Sbjct: 191 ---TSKGDPEL-MDLQATLDDHDLTLEQLIDVAIMIGTDFNDGVDGIGPKTALSLIHEHG 246
Query: 256 SIETILENI-NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
+ + LE+ + Y R+LF++P VTD+ + PD +++
Sbjct: 247 DLWSALESRGDHVEYG-------DRVRQLFRDPN-VTDDYEFTTDLD-PDVAAARDYVCE 297
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E ++D V + E+I+ + +S R
Sbjct: 298 EWAVDADEVARGFERIEESLVQSGLDR 324
>gi|257053576|ref|YP_003131409.1| flap endonuclease-1 [Halorhabdus utahensis DSM 12940]
gi|256692339|gb|ACV12676.1| XPG I domain protein [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 21/321 (6%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
+++ F+ G +A+DA +Y++L V T ++ T G ++L G+ +
Sbjct: 12 IEDVSFDVLEGSVVAVDAHNWLYRYLTTTVKWTNDDIYTTADGTEVANLVGVVQGLPKFF 71
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
EA + P++VFDG DLK E+ +R +R D L +A EAG+ + + RT ++T
Sbjct: 72 EADVTPVFVFDGAVTDLKDDEVQRRREQREQYEDQLEDAREAGDAVRVARLESRTQRLTD 131
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + LL L+ VP V+AP+E EAQ A + + G V V +ED D+L FGAP LR L
Sbjct: 132 VILETTRELLALLDVPTVDAPAEGEAQAAHMARRGDVDYVGTEDYDALLFGAPFTLRQLT 191
Query: 197 DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 256
SS +M+FE L E +L+ +Q +D+ +L G D+ D +RG G +TA+K +R+HG
Sbjct: 192 --SSGDPELMDFEAT--LAEHDLSWEQLVDVALLCGTDFNDGVRGYGPKTAVKAVREHGD 247
Query: 257 IETILENINRERYQIPEDWPYQEA---RRLFKEPEVVTDEEQLQIKWSA-PDEEGLINFL 312
+ + EN ED + A R LF +P V E+ I+ S PD F+
Sbjct: 248 LWGVSEN---------EDVYVENADRIRELFLDPAVT---EEYTIETSIDPDLAAAREFV 295
Query: 313 VSENGFNSDRVTKAIEKIKAA 333
+ +++ V + E+I+++
Sbjct: 296 TDQWAVDAEEVARGFERIESS 316
>gi|448474374|ref|ZP_21602233.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
gi|445817681|gb|EMA67550.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
Length = 325
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 172/326 (52%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+++E FE G +A+DA +Y++L V T T G ++L G+ +
Sbjct: 11 AIREVAFEEIEGSVVAVDAHNWLYRYLTTTVKWTADRKYTTADGVEVANLIGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A R +KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVADRRAKREQAEERRAAAAERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
++ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIHETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L++L + +D+ +L G D+ + +RG+G +TA+K I +HG
Sbjct: 191 ---TSKGNPEL-MDLAATLDDLGVDRQGLVDIAMLCGTDFNEGVRGVGPKTAVKAIAEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +LE E IP R LF +P V + + PD E +++V E
Sbjct: 247 DLWGVLEARGAE---IPN---AAAIRELFMDPPAVDVDVDTAVN---PDVEAARSYVVDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G ++D VT+ E+I ++ ++ R
Sbjct: 298 WGVDADEVTRGFERIAESQVQTGLDR 323
>gi|289582877|ref|YP_003481343.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
gi|448283660|ref|ZP_21474932.1| flap endonuclease-1 [Natrialba magadii ATCC 43099]
gi|289532430|gb|ADD06781.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
gi|445573260|gb|ELY27783.1| flap endonuclease-1 [Natrialba magadii ATCC 43099]
Length = 325
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 166/314 (52%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTSSSKYTTADGTEVANLIGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRREQRQTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGAPYTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E L+ +LT++Q ID IL G D+ + I GIG +TAL I +HG + ++LE
Sbjct: 201 EAT--LDHHDLTLEQLIDAAILIGTDFNEGISGIGPKTALTEISEHGDLWSVLEARG--- 255
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
E Y + R LF+EP VTDE + + PD E ++ E G ++D V +
Sbjct: 256 ----ETLEYGDRVRALFREPN-VTDEYEFETTLD-PDIEAAREYVTEEWGVDADEVARGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ + ++ R
Sbjct: 310 ERIEESVTQTGLDR 323
>gi|448565137|ref|ZP_21636108.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
gi|445715796|gb|ELZ67549.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
Length = 326
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 144/247 (58%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T +AGE ++L G+ +
Sbjct: 11 ALSEVSFDEVAGSVVAVDAHNWLYRYLTTTVKWTSSEKYTTDAGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A L EA EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEEAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L+ VPVVEAP+E EAQ + + + G V SED D L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDPLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+K++ +HG
Sbjct: 191 ---TSKGDPEL-MDLDATLDKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|448358107|ref|ZP_21546792.1| flap endonuclease-1 [Natrialba chahannaoensis JCM 10990]
gi|445646678|gb|ELY99662.1| flap endonuclease-1 [Natrialba chahannaoensis JCM 10990]
Length = 325
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 170/327 (51%), Gaps = 18/327 (5%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
+KE F G +A+DA +Y++L V T + T G ++L G+ +
Sbjct: 12 IKETPFSEIEG-VVAVDAHNWLYRYLTTTVKWTNSSKYTTTDGTEVANLIGIVQGLPKFF 70
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E + P+ VFDG P +LK+ E+ R +R L A E G++ I + RT ++T
Sbjct: 71 ENDVTPVMVFDGGPSELKEDEIESRREQRQTYEAQLETAREEGDEVAIAQLESRTQRLTP 130
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + LL+L+ VP+VEAP+E EAQ A + + G V SED D+L FG+P LR L
Sbjct: 131 TIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGSPYTLRQL- 189
Query: 197 DPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P +M+ E L+ +LT++Q ID IL G D+ + I GIG +TAL I +HG
Sbjct: 190 --TSKGDPELMDLEAT--LDHHDLTLEQLIDAAILIGTDFNEGISGIGPKTALSAISEHG 245
Query: 256 SIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
+ ++LE E Y + R LF+EP VTDE + + PD E ++
Sbjct: 246 DLWSVLEARG-------ETLEYGDRVRALFREPN-VTDEYEFETTLD-PDMEAAREYVTD 296
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E G ++D V + E+I+ + ++ R
Sbjct: 297 EWGVDADEVARGFERIEESVTQTGLDR 323
>gi|383622569|ref|ZP_09948975.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
gi|448694526|ref|ZP_21697026.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
gi|445785111|gb|EMA35906.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
Length = 325
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 168/314 (53%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T +++ T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSDIYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK E+ R +R + L A E G++ I + RT ++T + + LL+L
Sbjct: 84 PSELKADEIESRREQRRSYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLF 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRHGDADYVGSEDYDALLFGAPLTLRQL---TSKGNPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E LEE +LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE R
Sbjct: 201 EAT--LEEHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAITEITEHGDLWSVLEA----R 254
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
E Y + R+LF++P VTD+ + + PD E ++ E G + D V +
Sbjct: 255 GDTVE---YGDRVRQLFRDPN-VTDDYEFETTLD-PDLEAAREYVTDEWGVDRDEVARGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ + ++ R
Sbjct: 310 ERIEESVTQTGLDR 323
>gi|448496208|ref|ZP_21610310.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
gi|445687084|gb|ELZ39377.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
Length = 325
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 173/330 (52%), Gaps = 22/330 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ FE G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVAFEEIEGSVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L L +D+ +L G D+ + +RG+G +TA+K +R+HG
Sbjct: 191 ---TSKGDPEL-MDLAATLGDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVVTDEEQLQIKWSAPDEEGLINF 311
+ +LE + D P EA R LF +P +V D E PD E +
Sbjct: 247 DLWGVLEARDA-------DIPNAEAIRELFMDPPAEDVSVDTE------VNPDVEAAREY 293
Query: 312 LVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+V E G ++D V + E+I ++ ++ R
Sbjct: 294 VVDEWGVDADEVERGFERIAESQVQTGLDR 323
>gi|313126141|ref|YP_004036411.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
gi|448285981|ref|ZP_21477218.1| flap endonuclease-1 [Halogeometricum borinquense DSM 11551]
gi|312292506|gb|ADQ66966.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
gi|445575574|gb|ELY30047.1| flap endonuclease-1 [Halogeometricum borinquense DSM 11551]
Length = 326
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 175/317 (55%), Gaps = 15/317 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+ E F+ G +A+DA +Y++L V TG E+ T GE ++L G+ +
Sbjct: 11 SLSEVSFDDLAGGVVAVDAHNWLYRYLTTTVKFTGDEVYTTTEGEEVANLIGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG +LK E+++R ++R A + EA E G+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTELKDAEVSERRAQREKAEELKKEAEERGDDMEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
++ + LL+ + VPV+EAP+E EAQ + + K G V V SED D+L GAP LR L
Sbjct: 131 DVIHETSRGLLERLDVPVIEAPAEGEAQASYMAKQGDVDYVGSEDYDTLLLGAPYTLRQL 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+ E L +L++T +Q ID+ IL G D+ + I G+G +TALK +++H
Sbjct: 191 ---TSKGDPELMDLEAT--LSDLDVTQEQLIDIAILCGTDFNEGISGVGPKTALKEVKEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
G + T+LE R+ Y D R LF++P VTD+ + S PD + ++
Sbjct: 246 GDLWTVLE--ARDDYIENAD----RVRELFRDPP-VTDDYEFDTDLS-PDLDAARAYVSE 297
Query: 315 ENGFNSDRVTKAIEKIK 331
E +D V + E+I+
Sbjct: 298 EWEVPADEVARGFERIE 314
>gi|448713770|ref|ZP_21702055.1| flap endonuclease-1 [Halobiforma nitratireducens JCM 10879]
gi|445789178|gb|EMA39869.1| flap endonuclease-1 [Halobiforma nitratireducens JCM 10879]
Length = 325
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 167/314 (53%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T +++ T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDIYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRREQRRTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRE 267
E LE+ +LT++Q ID IL G D+ D + GIG +TA+K I +HG + ++LE +
Sbjct: 201 EAT--LEKHDLTLEQLIDAAILIGTDFNDGVSGIGPKTAIKAITEHGDLWSVLEARGDSV 258
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
Y R+LF++P VTD+ + PD E ++ E + D V +
Sbjct: 259 EYG-------DRVRQLFRDPN-VTDDYEFDAT-PDPDLEAAREYVTDEWAVDPDEVARGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ + ++ R
Sbjct: 310 ERIEESITQTGLDR 323
>gi|448622799|ref|ZP_21669448.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
gi|445753307|gb|EMA04724.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
Length = 326
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 145/247 (58%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVAGSVVAVDAHNWLYRYLTTTVKWTSSEKYTTTEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDSVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D ++LL L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRKLLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+K++++HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKVVKEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|448309987|ref|ZP_21499840.1| flap endonuclease-1 [Natronorubrum bangense JCM 10635]
gi|445589008|gb|ELY43247.1| flap endonuclease-1 [Natronorubrum bangense JCM 10635]
Length = 325
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 164/314 (52%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T ++ T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSDKYTTADGTEVANLIGIVQGLPKFFEHDITPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P DLK E+ R +R D L A E G+ I + RT ++T + + LL+L+
Sbjct: 84 PSDLKADEIESRREQRESYEDQLEVAREEGDTVAIAQLESRTQRLTPTIQETSRELLELL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQL---TSKGNPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRE 267
E LE +LT++Q ID IL G D+ D + GIG +TA+ I +HG + ++LE +
Sbjct: 201 EAT--LEHHDLTLEQLIDAAILIGTDFNDGVHGIGPKTAISEITEHGDLWSVLEARGDSV 258
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
Y R+LF++P VTD+ + + PD E ++ E G ++ V +
Sbjct: 259 EYG-------DRVRQLFRDPN-VTDDYEFETTLD-PDLEAAKAYVTDEWGVDAGEVERGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ + ++ R
Sbjct: 310 ERIEESVTQAGLDR 323
>gi|448738796|ref|ZP_21720817.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
gi|445801182|gb|EMA51526.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
Length = 325
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 20/324 (6%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGM 80
+F G +AIDA +Y++L V T + T AGE ++L G+ + E +
Sbjct: 16 EFSELAGATVAIDAHNWLYRYLTTTVKWTSDAIYTTAAGEEVANLVGVVQGLPKFFEHDI 75
Query: 81 KPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHND 140
P+ VFDG DLK E+ +R ++ A EA EAG+ + + RT ++T ++
Sbjct: 76 TPVMVFDGGVTDLKTDEIEQRREQKEKAAKRAKEAREAGDAVEAARLESRTQRLTDTIHE 135
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+ LL L+ VP+VEAP+E EAQ A + ++G V SED D+L FGAPR LR L
Sbjct: 136 TTRELLALLDVPIVEAPAEGEAQAAHMARTGTVDYAGSEDYDTLLFGAPRTLRDLTSKGD 195
Query: 201 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
+ ++ L+E +LT +Q +D+ IL G D+ D + GIG +TA+KL+ +HG + +
Sbjct: 196 PECMALD----ATLDEHDLTWEQLVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGDLWAV 251
Query: 261 LENINRERYQIPEDWPYQEA---RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
LE ED + A R LF P+V + I+ PD + ++ E
Sbjct: 252 LE---------AEDAYIENADLVRELFVNPDVTDTDFDPAIE---PDLDAARTYVTDEWE 299
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGR 341
+ V + E+I+ + +S R
Sbjct: 300 IPASEVERGFERIQESVVQSGLDR 323
>gi|435846409|ref|YP_007308659.1| flap endonuclease 1 [Natronococcus occultus SP4]
gi|433672677|gb|AGB36869.1| flap endonuclease 1 [Natronococcus occultus SP4]
Length = 325
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 165/314 (52%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
IA+DA +Y++L V T +E T G ++L G+ R E + P+ VFDG
Sbjct: 24 IAVDAHNWLYRYLTTTVKWTASEKYTTGDGTEVANLIGIVQGVARFFEHDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P LK E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSQLKADEIESRREQRRSYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLELL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VPVVEAP+E EAQ A + K G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPVVEAPAEGEAQAAHIVKRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E LE LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE R
Sbjct: 201 EAT--LERHELTLEQLIDAAILIGTDFNEGVSGIGPKTAISEITEHGDLWSVLEA----R 254
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
E Y + R+LF++P+ VTD+ + PD E ++ E G +D V ++
Sbjct: 255 GDTVE---YGDRVRQLFRDPD-VTDDYSFETSLE-PDLEDARAYVTDEWGVAADEVERSF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ ++ R
Sbjct: 310 ERIEEHATQTGLDR 323
>gi|448321569|ref|ZP_21511045.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
gi|445603121|gb|ELY57089.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
Length = 325
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 166/314 (52%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
IA+DA +Y++L V T +E T G ++L G+ R E + P+ VFDG
Sbjct: 24 IAVDAHNWLYRYLTTTVKWTSSEKYTTADGTEVANLIGIVQGISRFFEHDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSQLKEDEIESRREQRRTYEEQLETAREEGDQVAIAQLESRTQRLTPTIQETSRELLELL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VPVVEAP+E EAQ A + K G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPVVEAPAEGEAQAAHVVKRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E LE +LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE R
Sbjct: 201 EAT--LERHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISEITEHGDLWSVLEA----R 254
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
E Y + R+LF++P VTD+ + PD E ++ E G +D V ++
Sbjct: 255 GDTVE---YGDRVRQLFRDPN-VTDDYAFETT-IEPDLEAARAYVTDEWGVAADEVERSF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ ++ R
Sbjct: 310 ERIEEQATQTGLDR 323
>gi|448568151|ref|ZP_21637728.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
gi|445727101|gb|ELZ78715.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
Length = 326
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 143/247 (57%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVSGSVVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDLVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L VPVVEAP+E EAQ + + ++G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+KL+ +HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|311977771|ref|YP_003986891.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|82000308|sp|Q5UQW7.1|YL386_MIMIV RecName: Full=Putative endonuclease L386
gi|55417005|gb|AAV50655.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|308204373|gb|ADO18174.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|339061318|gb|AEJ34622.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
Length = 473
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 153/295 (51%), Gaps = 54/295 (18%)
Query: 1 MGIKGLTKLLADNAP-----------------------KSMKEQKFESYFGRKIAIDASM 37
MGIKGL KLL + K + +F G +AIDAS+
Sbjct: 1 MGIKGLFKLLREKIKEEEKEGLKRKELGIPDDDTKIKYKPLTVYRFRRLKGITVAIDASL 60
Query: 38 SIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE 97
+IY+ + ++G L N G++TSHL+G+F + L+ + PIYVFDG+ PD+K +
Sbjct: 61 AIYRMVYGKLKSGPS-LVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKT 119
Query: 98 LAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 157
+ KR K K K+T + + + LL LMG+P + AP
Sbjct: 120 IEKR------------------------KLRKDRFKLTSEDIKEVQILLDLMGIPYIIAP 155
Query: 158 SEAEAQCAALC----KSGQVYA--VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 211
EA+ C+ LC +G+ Y V +ED D L GAP + ++ ++ ++ ++
Sbjct: 156 GEADVICSWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLK 215
Query: 212 KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 266
+L L LTM++FIDLC+L GCDYCD+I+GIG + A KLI ++ +++ +LE +++
Sbjct: 216 DVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLEFLHK 270
>gi|448382773|ref|ZP_21562268.1| flap endonuclease-1 [Haloterrigena thermotolerans DSM 11522]
gi|445661242|gb|ELZ14033.1| flap endonuclease-1 [Haloterrigena thermotolerans DSM 11522]
Length = 325
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 169/326 (51%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+++E F+ G +A+DA +Y++L V T + T G ++L G+ +
Sbjct: 11 AIEEIPFDDVEG-VVAVDAHNWLYRYLTTTVKWTDSAKYTTADGTEVANLVGIVQGLPKF 69
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG P +LK E+ R +R L A E G+ I + RT ++T
Sbjct: 70 FEHDITPVMVFDGGPSELKDDEIESRREQRRSYEAQLETAREEGDAVAIAQLESRTQRLT 129
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQ A + K G V SED D+L FGAP LR L
Sbjct: 130 PTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGAPLTLRQL 189
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L+ +LT++Q ID IL G D+ D + GIG +TAL I +HG
Sbjct: 190 ---TSKGDPEL-MDLAATLKRHDLTLEQLIDAAILIGTDFNDGVSGIGPKTALSAIAEHG 245
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ T+LE R + D R+LF++P VTD+ + + PD ++ E
Sbjct: 246 DLWTVLE--ARGDHVEHGD----RVRQLFRDPN-VTDDYEFETTLE-PDLAAAREYVTDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G + D V + E+I+ + ++ R
Sbjct: 298 WGVDEDEVARGFERIEDSVTQTGLDR 323
>gi|448374758|ref|ZP_21558548.1| flap endonuclease-1 [Halovivax asiaticus JCM 14624]
gi|445659884|gb|ELZ12686.1| flap endonuclease-1 [Halovivax asiaticus JCM 14624]
Length = 326
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 169/327 (51%), Gaps = 15/327 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S++ F+ G +A+DA +Y++L V T + T G ++L GM +
Sbjct: 11 SIESIPFDELEGSVVAVDAHNWLYRYLTTTVKWTNSSTYTTPDGTEVANLVGMVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG P DLK E+ R +R + L A E G++ I + T ++T
Sbjct: 71 FEHDIVPVMVFDGGPSDLKTDEIESRREQRESYEEQLEVAREEGDQVAIAQLESYTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+ + VPVVEAP+E EAQ A + ++G V SED D+L FG+PR LR L
Sbjct: 131 PTIQETSRELLRFLDVPVVEAPAEGEAQAANIVRNGDADYVGSEDYDALLFGSPRTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ +LT++Q ID+ I+ G D+ + G+G +TAL L+ +HG
Sbjct: 191 ---TSKGDPEL-MDLQATLDDHDLTLEQLIDVAIMIGTDFNHGVDGVGPKTALSLVHEHG 246
Query: 256 SIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
+ + LE + Y R+LF++P VTD+ + PD +++
Sbjct: 247 DLWSALEARGDHVEYG-------DRVRQLFRDPN-VTDDYEFTTDLD-PDVAAARDYVCE 297
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E ++D V + E+I+ + +S R
Sbjct: 298 EWAVDADEVARGFERIEESLVQSGLDR 324
>gi|55376971|ref|YP_134821.1| flap endonuclease-1 [Haloarcula marismortui ATCC 43049]
gi|74520713|sp|Q5V5T7.1|FEN_HALMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55229696|gb|AAV45115.1| DNA repair protein Rad2 [Haloarcula marismortui ATCC 43049]
Length = 326
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 164/321 (51%), Gaps = 25/321 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F+ G +A+DA +Y++L V T T GE ++L G+ +
Sbjct: 11 ALSDVSFDDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTSNGEEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E M P++VFDG DLK E+ KR +R +L A EAG+ + K RT ++T
Sbjct: 71 FEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+F A LE +LT +Q +D IL G D+ + I GIG +TA+K + +H
Sbjct: 191 ---TSKGDPELMDF--AATLEHHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEH 245
Query: 255 GSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLI 309
G + T+L E+I+ R LF +P D E I S PD +
Sbjct: 246 GDLYTVLAARGEHIDHA----------DRIRDLFLDPAATDDYE---IPDSIEPDIDAAR 292
Query: 310 NFLVSENGFNSDRVTKAIEKI 330
F+ + ++D V + E+I
Sbjct: 293 TFVTDQWEVDADEVARGFERI 313
>gi|448583086|ref|ZP_21646555.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
gi|445730043|gb|ELZ81635.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
Length = 326
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 144/247 (58%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T G+ ++L G+ +
Sbjct: 11 ALSEVSFDEVTGSVVAVDAHNWLYRYLTTTVKWTSSEKYTTSEGKEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+K++++HG
Sbjct: 191 ---TSKGDPEL-MDLDATLDKHDITWEQLVDIAMLCGTDFNEGITGIGPKTAVKVVKEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|448344743|ref|ZP_21533645.1| flap endonuclease-1 [Natrinema altunense JCM 12890]
gi|445636849|gb|ELY90006.1| flap endonuclease-1 [Natrinema altunense JCM 12890]
Length = 325
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 171/328 (52%), Gaps = 18/328 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+++E FE G +A+DA +Y++L V T + T G ++L G+ +
Sbjct: 11 AIEEIPFEDVEG-VVAVDAHNWLYRYLTTTVKWTDSSKYTTADGTEVANLVGIVQGLPKF 69
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG P DLK E+ R +R + L A E G+ I + RT ++T
Sbjct: 70 FEHDITPVMVFDGGPSDLKDDEIESRREQRRSYEEQLETAREEGDAVAIAQLESRTQRLT 129
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQ A + K G V SED D+L FGAP LR L
Sbjct: 130 PTIQETSRDLLRLLDVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGAPLTLRQL 189
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+ E L + +LT++Q ID IL G D+ + + GIG +TA+ I +H
Sbjct: 190 ---TSKGDPELMDLEAT--LAQHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISAITEH 244
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE-QLQIKWSAPDEEGLINFLV 313
G + + LE R + D R+LF++P+V D E + I PD EG ++
Sbjct: 245 GDLWSALE--ARGDHVEHGD----RVRQLFRDPDVTDDYEFESTID---PDLEGAKTYVT 295
Query: 314 SENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E G ++ V + E+I+ + ++ R
Sbjct: 296 DEWGVDAGEVERGFERIEESVTQTGLDR 323
>gi|351737540|gb|AEQ60575.1| putative endonuclease of the XPG family [Acanthamoeba castellanii
mamavirus]
gi|398257219|gb|EJN40827.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
lentillevirus]
Length = 473
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 143/257 (55%), Gaps = 31/257 (12%)
Query: 16 KSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
K + +F G +AIDAS++IY+ + ++G L N G++TSHL+G+F +
Sbjct: 39 KPLTVYRFRRLKGITVAIDASLAIYRMVYGKLKSGPS-LVNREGKLTSHLRGIFYNVLTF 97
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
L+ + PIYVFDG+ PD+K + + KR K K K+T
Sbjct: 98 LQNDIIPIYVFDGKAPDIKSKTIEKR------------------------KLRKDRFKLT 133
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----KSGQVYA--VASEDMDSLTFGAP 189
+ + + LL LMG+P + AP EA+ C+ LC +G+ Y V +ED D L GAP
Sbjct: 134 SEDIKEVQILLDLMGIPYIIAPGEADVICSWLCARHDSNGKRYVKGVCTEDSDMLPLGAP 193
Query: 190 RFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 249
+ ++ ++ ++ ++ +L L LTM++FIDLC+L GCDYCD+I+GIG + A K
Sbjct: 194 YMFKDMLGLNNLNKNIIIVKLKDVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIGPKNAYK 253
Query: 250 LIRQHGSIETILENINR 266
LI ++ +++ +LE +++
Sbjct: 254 LIVEYRTLDKVLEFLHK 270
>gi|344211083|ref|YP_004795403.1| flap endonuclease-1 [Haloarcula hispanica ATCC 33960]
gi|343782438|gb|AEM56415.1| flap endonuclease-1 [Haloarcula hispanica ATCC 33960]
Length = 326
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 165/317 (52%), Gaps = 17/317 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F G +A+DA +Y++L V T T GE ++L G+ +
Sbjct: 11 ALSDVSFGDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTSDGEEVANLIGVIQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG DLK E+ KR +R +L A EAG+ + K RT ++T
Sbjct: 71 FEHDLTPVFVFDGAVTDLKDDEVEKRREQREKYESELEAAREAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+FE LE+ +LT +Q +D IL G D+ + I GIG +TA+ + +H
Sbjct: 191 ---TSKGDPELMDFEAT--LEQHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVTELHEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLINFLV 313
G + +LE R+ + D R LF +PEV D E I S PD + F+
Sbjct: 246 GDLYAVLE--ARDEHIDHAD----RIRNLFLDPEVTDDYE---IPDSIEPDVDAARAFVT 296
Query: 314 SENGFNSDRVTKAIEKI 330
+ ++D V + E+I
Sbjct: 297 DKWEVDADEVARGFERI 313
>gi|448546419|ref|ZP_21626583.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|448548406|ref|ZP_21627673.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
gi|448557600|ref|ZP_21632789.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445702872|gb|ELZ54812.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|445714157|gb|ELZ65924.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445714501|gb|ELZ66263.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
Length = 326
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 141/247 (57%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVAGSVVAVDAHNWLYRYLTTTVKWTSSEKYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A L EA EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEEAREAGDSVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ +T +Q +D+ +L G D+ + I GIG +TA+K + +HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHGITHEQLVDIAMLCGTDFNEGITGIGPKTAVKAVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|336255103|ref|YP_004598210.1| Flap structure-specific endonuclease [Halopiger xanaduensis SH-6]
gi|335339092|gb|AEH38331.1| Flap structure-specific endonuclease [Halopiger xanaduensis SH-6]
Length = 325
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 165/314 (52%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSSVYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHIVRRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E L +LT++Q ID IL G D+ + + GIG +TA+K I +HG + ++LE
Sbjct: 201 EAT--LAHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIKEITEHGDLWSVLEARG--- 255
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
+ Y + R+LF++P VTDE + PD E ++ E G D V +
Sbjct: 256 ----DSIEYGDRVRQLFRDPN-VTDEYEFDTAMD-PDLEAAREYVTDEWGVAPDEVERGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+IK + ++ R
Sbjct: 310 ERIKESVTQTGLDR 323
>gi|448651213|ref|ZP_21680282.1| flap endonuclease-1 [Haloarcula californiae ATCC 33799]
gi|445770740|gb|EMA21798.1| flap endonuclease-1 [Haloarcula californiae ATCC 33799]
Length = 326
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 163/321 (50%), Gaps = 25/321 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F+ G +A+DA +Y++L V T T GE ++L G+ +
Sbjct: 11 ALSDVSFDDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTSNGEEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E M P++VFDG DLK E+ KR +R +L A EAG+ + K RT ++T
Sbjct: 71 FEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+F A LE +LT +Q +D IL G D+ + I GIG +TA+K + +H
Sbjct: 191 ---TSKGDPELMDF--AATLEHHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEH 245
Query: 255 GSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLI 309
G + T+L E+I+ R LF +P D E I S PD +
Sbjct: 246 GDLYTVLAARGEHIDHA----------DRIRDLFLDPAATDDYE---IPDSIEPDIDAAR 292
Query: 310 NFLVSENGFNSDRVTKAIEKI 330
F+ + + D V + E+I
Sbjct: 293 TFVTDQWEVDPDEVARGFERI 313
>gi|448453282|ref|ZP_21593725.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
gi|445807602|gb|EMA57685.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
Length = 325
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 173/330 (52%), Gaps = 22/330 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVPFAELEGSVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L+L + +D+ +L G D+ + +RGIG +TA+ +++HG
Sbjct: 191 ---TSKGDPEL-MDLAATLSDLDLDRQELVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVVTDEEQLQIKWSAPDEEGLINF 311
+ +LE + E P EA R LF +P +V D + PD E +
Sbjct: 247 DLWGVLEARDAEV-------PNAEAIRELFMDPPAEDVAVDAD------VNPDVEAARAY 293
Query: 312 LVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+V E G ++D V + E+I ++ ++ R
Sbjct: 294 VVDEWGVDADEVERGFERIAESQVQTGLDR 323
>gi|448299433|ref|ZP_21489445.1| flap endonuclease-1 [Natronorubrum tibetense GA33]
gi|445588023|gb|ELY42272.1| flap endonuclease-1 [Natronorubrum tibetense GA33]
Length = 325
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 163/314 (51%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSGKYTTSDGTEVANLIGIVQGLPKFFEHDIVPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKDDEIESRREQRRSYEEQLETAREEGDQVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + K G V SED D+L FG+PR LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPRTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE- 267
E L+ LT++Q ID IL G D+ + + GIG +TA+K I +HG + ++LE
Sbjct: 201 EAT--LDHHELTLEQLIDAAILIGTDFNEGVSGIGPKTAIKAITEHGDLWSVLEARGAHI 258
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
Y R+LF++P VTD+ + + PD E ++ E ++D V +
Sbjct: 259 EYG-------DRVRKLFRDPN-VTDDYEFETTLD-PDLEAAKEYVCEEWAVDADEVARGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ ++ R
Sbjct: 310 ERIEEGVTQTGLDR 323
>gi|433592003|ref|YP_007281499.1| flap structure-specific endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334339|ref|ZP_21523517.1| flap endonuclease-1 [Natrinema pellirubrum DSM 15624]
gi|433306783|gb|AGB32595.1| flap structure-specific endonuclease [Natrinema pellirubrum DSM
15624]
gi|445620225|gb|ELY73731.1| flap endonuclease-1 [Natrinema pellirubrum DSM 15624]
Length = 325
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 172/329 (52%), Gaps = 20/329 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+++E F+ G +A+DA +Y++L V T + T G ++L G+ +
Sbjct: 11 AIEEIPFDDIEG-VVAVDAHNWLYRYLTTTVKWTDSAKYTTADGTEVANLVGIVQGLPKF 69
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG P +LK E+ R +R + L A E G+ I + RT ++T
Sbjct: 70 FEHDITPVMVFDGGPSELKDDEIESRREQRRSYEEQLETAREEGDAVAIAQLESRTQRLT 129
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQ A + K G V SED D+L FGAP LR L
Sbjct: 130 PTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKHGDADYVGSEDYDALLFGAPLTLRQL 189
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L+ +LT++Q ID IL G D+ D + GIG +TAL I +HG
Sbjct: 190 ---TSKGDPEL-MDLAATLKRHDLTLEQLIDAAILIGTDFNDGVSGIGPKTALSAIAEHG 245
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD---EEQLQIKWSAPDEEGLINFL 312
+ ++LE R + D R+LF++P+V D + +++ PD E ++
Sbjct: 246 DLWSVLE--ARGDHVEHGD----RVRQLFRDPDVTDDYGFDPEIE-----PDLEAAREYV 294
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E G ++ V + E+I+ + ++ R
Sbjct: 295 TGEWGIDAGEVERGFERIEESVTQTGLDR 323
>gi|448504703|ref|ZP_21614044.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|448519062|ref|ZP_21617838.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
gi|445701913|gb|ELZ53885.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|445704078|gb|ELZ55996.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
Length = 325
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVPFAELEGSVVAVDAHNWLYRYLTTTVKWTSDETYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L+L +D+ +L G D+ + +RGIG +TA+ +++HG
Sbjct: 191 ---TSKGDPEL-MDLAATLSDLDLDRQGLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVVTDEEQLQIKWSAPDEEGLINF 311
+ +LE + E P EA R LF +P +V D + PD E +
Sbjct: 247 DLWGVLEARDAEV-------PSAEAIRELFMDPPAEDVAVDAD------VNPDVEAARAY 293
Query: 312 LVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+V E G ++D V + E+I ++ ++ R
Sbjct: 294 VVDEWGVDADEVERGFERIAESQVQTGLDR 323
>gi|448729889|ref|ZP_21712201.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
gi|445794210|gb|EMA44763.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
Length = 325
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 167/325 (51%), Gaps = 24/325 (7%)
Query: 23 FESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
F G +AIDA +Y++L V T + T AGE ++L G+ + E +
Sbjct: 17 FSELAGATVAIDAHNWLYRYLTTTVKWTSDAVYTTTAGEEVANLVGIVQGLPKFFEHDVT 76
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
P++VFDG DLK E+ +R +R A + EA EAG+ + + RT ++T ++
Sbjct: 77 PVFVFDGGVTDLKTNEVERRREQREQAEERAVEAREAGDAIEAARLEARTQRLTDTIHET 136
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
+ LL L+ VPVVEAP+E EAQ A + +SG V SED D+L FGAPR LR L +S+
Sbjct: 137 TRELLGLLDVPVVEAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGAPRTLRGL---TSK 193
Query: 202 KIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
P MEFE L E +LT +Q +D+ IL G D+ + + G+G +TA+KL+R+HG +
Sbjct: 194 GDPECMEFEAT--LTEHDLTWEQLVDVGILCGTDFNEGVSGVGPKTAVKLVREHGDLWAA 251
Query: 261 LENINRERYQIPEDWPYQE----ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
LE ED Y E R LF P+V + I PD + ++ E
Sbjct: 252 LE---------AED-AYIENGDLIRELFLNPDVTDAKFDTDID---PDLDAAREYVTDEW 298
Query: 317 GFNSDRVTKAIEKIKAAKNKSSQGR 341
+ + E+I+ + +S R
Sbjct: 299 EIPESEIERGFERIEESVVQSGLDR 323
>gi|448602383|ref|ZP_21656439.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
gi|445747898|gb|ELZ99352.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
Length = 326
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 141/247 (57%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVAGSVVAVDAHNWLYRYLTTTVKWTSSEKYTTTEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+ ++ ++ +AK ++T +Q +D+ +L G D+ + I GIG +TA+K++ +HG
Sbjct: 191 TSKGNPELMDLDATLAK----HDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|448397895|ref|ZP_21569833.1| flap endonuclease-1 [Haloterrigena limicola JCM 13563]
gi|445672111|gb|ELZ24688.1| flap endonuclease-1 [Haloterrigena limicola JCM 13563]
Length = 325
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 164/317 (51%), Gaps = 23/317 (7%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T +E T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSETYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK E+ R +R + L A E G+ + + RT ++T + + LL+L+
Sbjct: 84 PSELKDDEIESRREQRRSYEEQLETAREEGDAVAVAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + K G V SED D+L FGAPR LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMAKRGDADYVGSEDYDALLFGAPRTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE----NI 264
E L+ +LT++Q ID IL G D+ + + GIG +TAL I HG + ++LE +I
Sbjct: 201 EAT--LDHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTALSEIADHGDLWSVLEARGDHI 258
Query: 265 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 324
+ R+LF++P VTD+ + + PD ++ E ++D V
Sbjct: 259 DHG----------DRVRQLFRDPN-VTDDYEFETTLE-PDLAAAREYVTDEWEIDADEVA 306
Query: 325 KAIEKIKAAKNKSSQGR 341
+ E+I+ + ++ R
Sbjct: 307 RGFERIEESVTQTGLDR 323
>gi|222480031|ref|YP_002566268.1| flap endonuclease-1 [Halorubrum lacusprofundi ATCC 49239]
gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 325
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 165/326 (50%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 AIRDISFAEIEGSVVAVDAHNWLYRYLTTTVKWTADETYTTTDGVEVANLIGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG +LK E+A R KR A + A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTELKADEVADRREKREQAEERRVAAKERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L++L +D +L G D+ + +RGIG +TA+K +R+HG
Sbjct: 191 ---TSKGDPEL-MDLAATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +L+ E IP + R LF +P + + PD + ++V E
Sbjct: 247 DLWGVLDARGVE---IPN---AEAIRELFMDPPATDVDVDTAVN---PDVDAAREYVVDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G +D V + E+I ++ ++ R
Sbjct: 298 WGVAADEVERGFERIAESQVQTGLDR 323
>gi|448592407|ref|ZP_21651514.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
gi|445731412|gb|ELZ82996.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
Length = 326
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 142/247 (57%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVAGSVVAVDAHNWLYRYLTTTVKWTNSEKYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A L EA EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEEAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 DTIQETSRELLRLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I G+G +TA+K +++HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITWEQLVDIAMLCGTDFNEGISGVGPKTAVKEVKKHG 246
Query: 256 SIETILE 262
+ +LE
Sbjct: 247 DLWAVLE 253
>gi|448640877|ref|ZP_21677664.1| flap endonuclease-1 [Haloarcula sinaiiensis ATCC 33800]
gi|445761402|gb|EMA12650.1| flap endonuclease-1 [Haloarcula sinaiiensis ATCC 33800]
Length = 326
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 163/321 (50%), Gaps = 25/321 (7%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F+ G +A+DA +Y++L V T T GE ++L G+ +
Sbjct: 11 ALSDVSFDDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTSNGEEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E M P++VFDG DLK E+ KR +R +L A EAG+ + K RT ++T
Sbjct: 71 FEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+F A LE +LT +Q +D IL G D+ + I GIG +TA+K + +H
Sbjct: 191 ---TSKGDPELMDF--AATLEHHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEH 245
Query: 255 GSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLI 309
G + +L E+I+ R LF +P D E I S PD +
Sbjct: 246 GDLYAVLAARGEHIDHA----------DRIRDLFLDPAATDDYE---IPDSIEPDIDAAR 292
Query: 310 NFLVSENGFNSDRVTKAIEKI 330
F+ + ++D V + E+I
Sbjct: 293 TFVTDQWEVDADEVARGFERI 313
>gi|429190737|ref|YP_007176415.1| flap structure-specific endonuclease [Natronobacterium gregoryi
SP2]
gi|448327264|ref|ZP_21516597.1| flap endonuclease-1 [Natronobacterium gregoryi SP2]
gi|429134955|gb|AFZ71966.1| flap structure-specific endonuclease [Natronobacterium gregoryi
SP2]
gi|445608848|gb|ELY62671.1| flap endonuclease-1 [Natronobacterium gregoryi SP2]
Length = 325
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 15/313 (4%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T +++ T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSDIYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T+ + + LL+L+
Sbjct: 84 PSELKEDEIESRREQRRTYEEQLETAREEGDELAIAQLESRTQRLTETIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L S + +M+ E
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRHGDADYVGSEDYDALLFGAPLTLRQLT--SKGDLELMDLE 201
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRER 268
LE +LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE +
Sbjct: 202 AT--LEHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSVE 259
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y R+LF++P VTD+ + PD E ++ E + D V + E
Sbjct: 260 YG-------DRVRQLFRDPN-VTDDYEFDTTLD-PDLEAAREYVCEEWTVDPDEVARGFE 310
Query: 329 KIKAAKNKSSQGR 341
+I+ + ++ R
Sbjct: 311 RIEESVTQTGLDR 323
>gi|345005776|ref|YP_004808629.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
gi|344321402|gb|AEN06256.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
Length = 326
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 160/308 (51%), Gaps = 25/308 (8%)
Query: 14 APKSMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRT 72
A ++++ F G +A+DA +Y++L V T + T G+ ++L G+
Sbjct: 8 AVAAIEDIPFSELSGSVVAVDAHNWLYRYLTTTVKFTADSVYTTSDGDEVANLLGVVQGL 67
Query: 73 IRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV 132
+ EA M P+ VFDG DLK E+ +R +R A + EA EAG+ + + RT
Sbjct: 68 PKFFEADMTPVLVFDGGVTDLKSDEVERRREQRKKAEERKQEAEEAGDSVEAARLEARTQ 127
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
++T ++ + LL + VP +EAP+E EAQCA + +G+V SED D++TFGAPR L
Sbjct: 128 RLTDTIHETTRGLLDRLDVPYIEAPAEGEAQCAHMAATGEVDYAGSEDYDTMTFGAPRTL 187
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
R L +S+ P + ++ K LE+ +++ +Q +D+ +L G D+ + + G G +TA+K ++
Sbjct: 188 RQL---TSKGHPEL-MDLQKTLEKHDISYEQLVDVALLMGTDFNEGVTGYGPKTAVKAVK 243
Query: 253 QHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQ--------------LQI 298
+HG I ++E + Y D R LF +P V D E +
Sbjct: 244 EHGDIWGVME--AEDVYVANAD----RVRELFFDPPVTDDYELDLDIDPDLDAARAYVSA 297
Query: 299 KWSAPDEE 306
+W P EE
Sbjct: 298 EWEVPAEE 305
>gi|448600910|ref|ZP_21656289.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
gi|445734923|gb|ELZ86479.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
Length = 326
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 143/247 (57%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVSGSVVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDAAEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L VPVVEAP+E EAQ + + ++G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+KL+ +HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|448305063|ref|ZP_21494997.1| flap endonuclease-1 [Natronorubrum sulfidifaciens JCM 14089]
gi|445589598|gb|ELY43826.1| flap endonuclease-1 [Natronorubrum sulfidifaciens JCM 14089]
Length = 325
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 160/304 (52%), Gaps = 17/304 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSSKYTTADGTEVANLVGIIQGLPKFFEHDITPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK E+ R +R D L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKADEIESRREQRETYEDQLEVAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQL---TSKGNPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRE 267
E LE +LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE +
Sbjct: 201 EAT--LEHHDLTLEQLIDAAILIGTDFNNGVHGIGPKTAISEITEHGDLWSVLEARGDSV 258
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
Y R+LF++P VTD+ + + PD E ++ E G ++ V +
Sbjct: 259 EYG-------DRVRQLFRDPN-VTDDYEFETTLE-PDLEAARAYVTDEWGIDAGEVERGF 309
Query: 328 EKIK 331
E+I+
Sbjct: 310 ERIE 313
>gi|448414274|ref|ZP_21577413.1| flap endonuclease-1 [Halosarcina pallida JCM 14848]
gi|445682567|gb|ELZ34984.1| flap endonuclease-1 [Halosarcina pallida JCM 14848]
Length = 326
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 169/317 (53%), Gaps = 15/317 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+ + F+ G +A+DA +Y++L V T ++ T GE ++L G+ +
Sbjct: 11 SLSDVSFDDVAGSVVAVDAHNWLYRYLTTTVKFTREDVYTTADGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG +LK E+++R ++R A + EA E G+ + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTELKDAEVSERRAQREKAEELKREAEERGDALAASRLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VPVVEAP+E EAQ + + K G V SED D+L FGAP LR L
Sbjct: 131 ETIQTTSRELLELLDVPVVEAPAEGEAQASHMAKRGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+ E L L +T +Q ID+ +L G D+ D + G+G +TALK ++
Sbjct: 191 ---TSKGDPELMDLEAT--LSSLEVTHEQLIDIAVLCGTDFNDGVSGVGPKTALKEVKAR 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
G + +L+ R+ Y D R LF +P VTD+ + S P+ E F+
Sbjct: 246 GDLWAVLD--ARDAYIDNAD----RVRELFLDPP-VTDDYEFDTDLS-PNVETARAFVTE 297
Query: 315 ENGFNSDRVTKAIEKIK 331
E G +++V + E+I+
Sbjct: 298 EWGIPAEKVERGFERIE 314
>gi|448310824|ref|ZP_21500603.1| flap endonuclease-1 [Natronolimnobius innermongolicus JCM 12255]
gi|445607172|gb|ELY61065.1| flap endonuclease-1 [Natronolimnobius innermongolicus JCM 12255]
Length = 325
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 159/313 (50%), Gaps = 15/313 (4%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSSKYTTADGTEVANLIGIVQGLPKFFENDITPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK E+ R +R L A E G+ I + RT ++T + + LL+L+
Sbjct: 84 PSELKDDEIESRREQRRSYEAQLETAREEGDAVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E LE LT++Q ID IL G D+ + + GIG +TAL I HG + ++LE R
Sbjct: 201 EAT--LERHELTLEQLIDAAILIGTDFNEGVSGIGPKTALTAITDHGDLWSVLE--ARGA 256
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
+ D R+LF+EP VTDE + + PD E F+ E + D V + E
Sbjct: 257 HVEHGD----RVRQLFREPN-VTDEYEFETALD-PDLEAAREFVCEEWAVDDDEVARGFE 310
Query: 329 KIKAAKNKSSQGR 341
+I + ++ R
Sbjct: 311 RIDESVTQTGLDR 323
>gi|448425472|ref|ZP_21582802.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|448485392|ref|ZP_21606617.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
gi|445680543|gb|ELZ32986.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|445818046|gb|EMA67913.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
Length = 325
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVPFAELEGSVVAVDAHNWLYRYLTTTVKWTSDETYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L+L +D+ +L G D+ + +RGIG +TA+ +++HG
Sbjct: 191 ---TSKGDPEL-MDLAATLSDLDLDRQGLVDVAMLCGTDFNEGVRGIGPKTAVTAVKEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVVTDEEQLQIKWSAPDEEGLINF 311
+ +LE + E P EA R LF +P +V D + PD E +
Sbjct: 247 DLWGVLEARDAEV-------PSAEAIRELFMDPPAEDVAVDAD------VNPDVEAARAY 293
Query: 312 LVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+V E G +++ V + E+I ++ ++ R
Sbjct: 294 VVDEWGVDANEVERGFERIAESQVQTGLDR 323
>gi|433418201|ref|ZP_20404929.1| flap endonuclease-1 [Haloferax sp. BAB2207]
gi|432199801|gb|ELK55943.1| flap endonuclease-1 [Haloferax sp. BAB2207]
Length = 326
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 143/247 (57%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVSGSVVAVDAHNWLYRYLTTTVKWTSSETYTTGEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDAAEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L VPVVEAP+E EAQ + + ++G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+KL+ +HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVKLVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|448327893|ref|ZP_21517213.1| flap endonuclease-1 [Natrinema versiforme JCM 10478]
gi|445617013|gb|ELY70619.1| flap endonuclease-1 [Natrinema versiforme JCM 10478]
Length = 325
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 18/327 (5%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
++E F+ G +A+DA +Y++L V T + T G ++L G+ +
Sbjct: 12 IEEIPFDDIEG-TVAVDAHNWLYRYLTTTVKWTDSGKYTTGDGTEVANLVGIVQGLPKFF 70
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E + P+ VFDG P +LK E+ R +R + L A E G+ I + RT ++T
Sbjct: 71 EHDITPVMVFDGGPSELKDDEIESRREQRRSYEEQLETAREEGDSVAIAQLESRTQRLTP 130
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + LL+L+ VP+VEAP+E EAQ A + K G V SED D+L FG+P LR L
Sbjct: 131 TIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQL- 189
Query: 197 DPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P +M+ E L +LT++Q ID IL G D+ + + GIG +TA+ I +HG
Sbjct: 190 --TSKGDPELMDLEAT--LAHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHG 245
Query: 256 SIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
+ ++LE + Y R+LF++P+ VTD+ + PD E ++
Sbjct: 246 DLWSVLEARGDHVEYG-------DRVRQLFRDPD-VTDDYEFDAS-VDPDLEAARAYVTD 296
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E G ++D V + E+I+ + ++ R
Sbjct: 297 EWGVDADEVARGFERIEESVTQTGLDR 323
>gi|294871168|ref|XP_002765850.1| flap endonuclease-1, putative [Perkinsus marinus ATCC 50983]
gi|239866179|gb|EEQ98567.1| flap endonuclease-1, putative [Perkinsus marinus ATCC 50983]
Length = 297
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 53 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL------AKRYSKRA 106
MLTN G TS + G RTI++LE G++PI+VFDG PP +K L A +Y K A
Sbjct: 1 MLTNSEGVCTSGVHGFLHRTIKMLELGIRPIFVFDGHPPAMKYDCLKERRVQATKYKKTA 60
Query: 107 DATDDLA-EAVEAGNKE-----DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEA 160
+ + + A EA ++ DI++ KR V LL ++ AP +A
Sbjct: 61 SSPAETSMPASEAPSRSVPMEIDIDRRLKRLVVHPP--------LLTHRASTLIAAP-QA 111
Query: 161 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD----PSSRKIP---VMEFEVAKI 213
EA C LCK G+ AV++ED+D++ FGAP L++L + S ++P V E +
Sbjct: 112 EATCVRLCKEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHHSRSMEVPNNYVREISRDVV 171
Query: 214 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-YQIP 272
L+ L+LT + +L IL GCDYC SI IG A L+ +HGSI +I+ I + Y+ P
Sbjct: 172 LDSLSLTAEGLAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSITSIITAIEGSKTYKAP 231
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 323
W Y+EAR LF P + TDE + K + + L + LV +N RV
Sbjct: 232 SGWAYREARELFLNP-LTTDEIFPRSKMNV---DALADLLVHRLDYNPARV 278
>gi|448612021|ref|ZP_21662451.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
gi|445742782|gb|ELZ94276.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
Length = 326
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 168/326 (51%), Gaps = 13/326 (3%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVGGSVVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG D+K E+AKR +R A + L A EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTDMKDDEVAKRREQREKAEERLEAAREAGDAAEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL+L+ VPVVEAP+E EAQ + + G V SED D+L FGAP LR L
Sbjct: 131 QTIQDTSRDLLRLLDVPVVEAPAEGEAQASYMAHKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L + +++ +Q ID+ +L G D+ + I G+G +TA+K +++HG
Sbjct: 191 ---TSKGNPEL-MDLDATLAKHDISWEQLIDIAMLCGTDFNEGITGVGPKTAVKEVKKHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ ++LE IP R F +P V D + PD + F+
Sbjct: 247 DLWSVLEARGE---SIPN---ADRVREFFVDPPVTDDYDYDTD--IEPDVDAAREFVTET 298
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
+ D V + E+I+ A ++ R
Sbjct: 299 WEIDPDEVRRGFERIEDAVVQTGLDR 324
>gi|448733248|ref|ZP_21715493.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
gi|445802982|gb|EMA53282.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
Length = 325
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 169/323 (52%), Gaps = 20/323 (6%)
Query: 23 FESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
F G +AIDA +Y++L V T + T AGE ++L G+ + E +
Sbjct: 17 FADLSGATVAIDAHNWLYRYLTTTVKWTSDAVYTTAAGEEVANLIGVVQGLPKFFEHDIT 76
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
P++VFDG DLK E+ +R +R A + AEA EAG+ + + RT ++T ++
Sbjct: 77 PVFVFDGGVTDLKTDEVERRREQREQAEERAAEAREAGDAVEAARLEARTQRLTDTIHET 136
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM---DP 198
+ LL+L+ VPVVEAP+E EAQ A + +SG V SED D+L FGAP LR L DP
Sbjct: 137 TRELLRLLDVPVVEAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGAPHTLRGLTGKGDP 196
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
MEFE L+E +LT +Q +D+ IL G D+ + + G+G +TA+KL+R+HG +
Sbjct: 197 EC-----MEFEAT--LKEHDLTWEQLVDVGILCGTDFNEGVSGVGPKTAVKLVREHGDLW 249
Query: 259 TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
LE +RY D R LF +P+V I+ PD + ++ E
Sbjct: 250 AALE--AEDRYVENGDL----IRELFLDPDVTDAAFDTDIE---PDLDAAREYVTGEWEI 300
Query: 319 NSDRVTKAIEKIKAAKNKSSQGR 341
D V + E+I+ + +S R
Sbjct: 301 PEDEVERGFERIEESVVQSGLDR 323
>gi|448726443|ref|ZP_21708848.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
gi|445795097|gb|EMA45633.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
Length = 325
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 162/324 (50%), Gaps = 20/324 (6%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGM 80
+F G +AIDA +Y++L V T + T AGE ++L G+ + E +
Sbjct: 16 EFSELAGATVAIDAHNWLYRYLTTTVKWTSDAVYTTAAGEEVANLVGIVQGLPKFFEHDI 75
Query: 81 KPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHND 140
P+ VFDG +LK E+ +R ++ A EA EAG+ + + RT ++T ++
Sbjct: 76 TPVMVFDGGVTELKADEIEQRREQKEKAAKRAKEAREAGDAVEAARLESRTQRLTTTIHE 135
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+ LL L+ VP+VEAP+E EAQ A + ++G V SED D+L FGAP LR L
Sbjct: 136 TTRELLDLLDVPIVEAPAEGEAQAAHMARTGTVDYAGSEDYDTLLFGAPHTLRDLTSKGD 195
Query: 201 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
+ ++ L+E +LT +Q +D+ IL G D+ D + GIG +TA+KL+ +HG +
Sbjct: 196 PECMALD----ATLDEHDLTWEQLVDVGILCGTDFNDGVSGIGPKTAVKLVGEHGDLWAA 251
Query: 261 LENINRERYQIPEDWPYQEA---RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 317
LE ED + A R LF P+V + I+ PD + ++ E
Sbjct: 252 LE---------AEDAYIENADLVRELFLNPDVTDTDFDPAIE---PDLDAARTYVTDEWE 299
Query: 318 FNSDRVTKAIEKIKAAKNKSSQGR 341
+ V + E+I+ + +S R
Sbjct: 300 IPASEVERGFERIQESVVQSGLDR 323
>gi|448678733|ref|ZP_21689740.1| flap endonuclease-1 [Haloarcula argentinensis DSM 12282]
gi|445772720|gb|EMA23765.1| flap endonuclease-1 [Haloarcula argentinensis DSM 12282]
Length = 326
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 164/317 (51%), Gaps = 17/317 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F+ G +A+DA +Y++L V T T GE ++L G+ +
Sbjct: 11 ALSDVSFDDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTSDGEEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG DLK E+ KR +R +L A EAG+ + K RT ++T
Sbjct: 71 FEHDLTPVFVFDGAVTDLKDDEVEKRREQREKYESELEAAREAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+F A LE +L+ +Q +D IL G D+ + I GIG +TA+K + +H
Sbjct: 191 ---TSKGDPELMDF--AATLERHDLSWEQLVDAAILMGTDFNEGISGIGPKTAVKDLHEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLINFLV 313
G + +LE R + D R LF +P V D E I S PD + F+
Sbjct: 246 GDLYAVLE--ARGEHIDHAD----RIRDLFLDPAVTDDYE---IPDSIEPDIDAARAFVT 296
Query: 314 SENGFNSDRVTKAIEKI 330
+ ++D V + E+I
Sbjct: 297 EQWEVDADEVARGFERI 313
>gi|448355812|ref|ZP_21544561.1| flap endonuclease-1 [Natrialba hulunbeirensis JCM 10989]
gi|445634520|gb|ELY87699.1| flap endonuclease-1 [Natrialba hulunbeirensis JCM 10989]
Length = 325
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 163/314 (51%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTSSSKYTTADGTEVANLLGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRREQRQTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FG+P LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGSPYTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E L +LT++Q ID IL G D+ + I GIG +TAL I +HG + ++LE
Sbjct: 201 EAT--LAHHDLTLEQLIDAAILIGTDFNEGISGIGPKTALSAISEHGDLWSVLEARG--- 255
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
E Y + R LF+EP VTDE + + PD ++ E ++D V +
Sbjct: 256 ----ETLEYGDRVRALFREPN-VTDEYEFETTLD-PDIAAAREYVTEEWEVDADEVERGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ + ++ R
Sbjct: 310 ERIEESVTQTGLDR 323
>gi|322369323|ref|ZP_08043888.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
gi|320551055|gb|EFW92704.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
Length = 326
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 172/323 (53%), Gaps = 15/323 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S++E F+ G +AIDA +Y++L V T E+ T E G ++L G+ +
Sbjct: 11 SLEEISFDDIEGSLVAIDAHNWLYRYLTTTVKWTRDEVYTTEDGTEVANLVGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG DLK E+ R +R + L EA E G+ ++ + T ++T
Sbjct: 71 FEHDLTPVFVFDGHVTDLKSDEIEDRREQREKLEERLEEAREEGDAIEVARLDAHTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL L+ VPV+EAP+E EAQ A + ++G V +ED D+L GAP LR L
Sbjct: 131 PVIQETTRELLDLLDVPVIEAPAEGEAQAAHMARTGAVDYAGTEDYDALLLGAPLTLRQL 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+FE L+E ++T +Q +D+ IL G D+ + + G+G +TALK + +H
Sbjct: 191 ---TSKGNPELMDFEAT--LDEHDITWEQLVDIAILCGTDFNEGVSGVGPKTALKGVTEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
G + +LE R+ Y D R +F EP+ VTDE + + PD E ++
Sbjct: 246 GDLWGVLE--ERDAYIENVD----VIRGMFLEPD-VTDEFEFDPE-MDPDIEAAREYVTE 297
Query: 315 ENGFNSDRVTKAIEKIKAAKNKS 337
E D V + E+I+ + ++
Sbjct: 298 EWDIREDEVARGFERIEESITQT 320
>gi|389848285|ref|YP_006350524.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|448618490|ref|ZP_21666727.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|388245591|gb|AFK20537.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|445746861|gb|ELZ98319.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
Length = 326
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 172/327 (52%), Gaps = 15/327 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVAGSVVAVDAHNWLYRYLTTTVKWTSSEKYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L EA EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRRKQREKAEERLEEAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL+L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLRLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ LE+ +++ +Q +D+ +L G D+ + I G+G +TA+K +++HG
Sbjct: 191 ---TSKGNPEL-MDLDATLEKHDISWEQLVDIAMLCGTDFNEGITGVGPKTAVKEVKKHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD-EEQLQIKWSAPDEEGLINFLVS 314
+ ++LE IP R F +P V D + I PD + F+
Sbjct: 247 DLWSVLEARGD---SIPN---ADRVREFFLDPPVTDDYDYNTGID---PDVDAAREFVTE 297
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+ D V + E+I+ + ++ R
Sbjct: 298 TWEVDPDEVRRGFERIEKSVTQTGLDR 324
>gi|359415965|ref|ZP_09208345.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
gi|358033683|gb|EHK02208.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 251
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 140/240 (58%), Gaps = 10/240 (4%)
Query: 19 KEQKFESYFGRKIAIDASMSIYQFL-IVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
+E +F R IAIDA ++YQFL I+ R GT L + G++TSHL G+F R I LLE
Sbjct: 12 EEIEFSDLNDRVIAIDAMNTLYQFLSIIRQRDGTP-LKDSDGDITSHLSGLFYRNINLLE 70
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQ 137
++P+YVFDG PDLK++E +R KR +A + + E G + + ++ K+T
Sbjct: 71 KDIRPVYVFDGAIPDLKQKETTERRKKREEAKKEWEKLKEEGKISEAYSKATQSSKLTGD 130
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
++ K LL MG+P ++A SE EAQ A + G VYAV S+D D + FGA R +R+L
Sbjct: 131 MIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDVYAVGSQDWDCMLFGADRMVRNLTS 190
Query: 198 PSSRK--------IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 249
+RK + E+ K+LEEL+L+ +Q + L ++ G D+ D I GIG + A +
Sbjct: 191 RKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLVMLGMVMGTDFNDGIHGIGPKKAWR 250
>gi|448667547|ref|ZP_21686047.1| flap endonuclease-1 [Haloarcula amylolytica JCM 13557]
gi|445770115|gb|EMA21183.1| flap endonuclease-1 [Haloarcula amylolytica JCM 13557]
Length = 326
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 165/317 (52%), Gaps = 17/317 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F G +A+DA +Y++L V T T GE ++L G+ +
Sbjct: 11 ALSDVSFGDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTGDGEEVANLIGVIQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG DLK E+ KR +R +L A +AG+ + K RT ++T
Sbjct: 71 FEHDLTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAARKAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 ETIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+FE LE+ +LT +Q +D IL G D+ + I GIG +TA+ + +H
Sbjct: 191 ---TSKGDPELMDFEAT--LEQHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVTELHEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA-PDEEGLINFLV 313
G + +LE R+ + D R LF +P V D E I S PD + F+
Sbjct: 246 GDLYAVLE--ARDEHIDHAD----RIRNLFLDPAVTDDYE---IPDSIEPDVDAARAFVT 296
Query: 314 SENGFNSDRVTKAIEKI 330
+ +++ V + E+I
Sbjct: 297 EQWEVDAEEVARGFERI 313
>gi|448439982|ref|ZP_21588230.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
gi|445690499|gb|ELZ42709.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
Length = 325
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 AIRDVAFAEIEGSVVAVDAHNWLYRYLTTTVKWTSDEAYTTADGVEVANLIGVAQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E G+ P+ VFDG +LK E+A R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHGLTPVMVFDGAVTELKADEVADRREKREAAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+SR P + ++A L+ L +D +L G D+ + +RGIG +TA+K +R+HG
Sbjct: 191 ---TSRGDPEL-MDLAATLDGLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +L+ E IP + R LF +P E + PD + ++V E
Sbjct: 247 DLWGVLDARGAE---IPN---AEAIRELFMDPPATDVEVDATVN---PDVDAAREYVVEE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G +D V + E+I ++ ++ R
Sbjct: 298 WGVAADEVERGFERIAESQVQTGLDR 323
>gi|448318654|ref|ZP_21508168.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
gi|445598248|gb|ELY52311.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
Length = 325
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 163/314 (51%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
IA+DA +Y++L V T +E T G ++L G+ R E + P+ VFDG
Sbjct: 24 IAVDAHNWLYRYLTTTVKWTASEKYTTADGTEVANLIGIVQGLARFFEHDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P LK +E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSQLKSEEIESRREQRRTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLELL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VPVVEAP+E EAQ A L K G V SED D+L FGAP LR L +S+ P +M+
Sbjct: 144 DVPVVEAPAEGEAQAAHLVKRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 268
E LE +LT++Q ID IL G D+ + + GIG +TA+ I + G + ++LE R
Sbjct: 201 EAT--LERHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISEITERGDLWSVLEA----R 254
Query: 269 YQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
E Y + R+LF++P VTD+ + PD E ++ E + V ++
Sbjct: 255 GDTIE---YGDRVRQLFRDPN-VTDDYGFETT-IEPDLEAARAYVTDEWSVAAGEVERSF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ ++ R
Sbjct: 310 ERIEEYATQTGLDR 323
>gi|76155152|gb|AAX26398.2| SJCHGC04804 protein [Schistosoma japonicum]
Length = 130
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L+K++ DNA K++K + +SYFGRK+AIDASMSIYQFLI V + G ++ N GE
Sbjct: 1 MGVHQLSKVIGDNAQKAVKSCEIKSYFGRKVAIDASMSIYQFLIAVRQEGNTLM-NAEGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
TSHL GMF RTIR++E+G+KP+YVF+G+PP +K ELAKR +R ++T +LA+A +
Sbjct: 60 STSHLMGMFYRTIRMIESGIKPVYVFEGKPPSMKAGELAKRADRRIESTKELAKAEAEED 119
Query: 121 KEDIEKFSKR 130
E IEKFSKR
Sbjct: 120 LEAIEKFSKR 129
>gi|292656986|ref|YP_003536883.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|448293584|ref|ZP_21483689.1| flap endonuclease-1 [Haloferax volcanii DS2]
gi|291370541|gb|ADE02768.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|445570445|gb|ELY25008.1| flap endonuclease-1 [Haloferax volcanii DS2]
Length = 326
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 144/247 (58%), Gaps = 5/247 (2%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVSFDEVSGSVVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANLVGIVQGIPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L EA EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEEAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ D + LL L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 ETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I GIG +TA+K++ +HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITYEQLVDIAMLCGTDFNEGITGIGPKTAVKVVTEHG 246
Query: 256 SIETILE 262
+ ++LE
Sbjct: 247 DLWSVLE 253
>gi|110668340|ref|YP_658151.1| flap endonuclease-1 [Haloquadratum walsbyi DSM 16790]
gi|121684788|sp|Q18HK0.1|FEN_HALWD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|109626087|emb|CAJ52538.1| flap endonuclease Fen1 [Haloquadratum walsbyi DSM 16790]
Length = 326
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 19/334 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAG 59
MG L +L A ++ F+ G IA+DA +Y++L V T T E+G
Sbjct: 1 MGNAALRQLAA------LESVAFDDISGSVIAVDAHNWLYRYLTTTVKFTSDAAYTTESG 54
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++L G+ + E + P++VFDG +LK +E+ +R R +A + A A E G
Sbjct: 55 VEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAAAEERG 114
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + RT ++T+ ++ + LL + VP++EAP+E EAQ A + G V V SE
Sbjct: 115 DELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVDYVGSE 174
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+L FGAP +R L +S+ P + ++ L+ NLT +Q +D+ IL G D+ D I
Sbjct: 175 DYDTLLFGAPYTVRQL---TSKGDPEL-MDLQTTLKNQNLTREQLVDVAILCGTDFNDGI 230
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
GIG TA+ I HG + ++L+ R+ + D R LF +P VT+E L
Sbjct: 231 SGIGPATAISAINDHGDLWSVLD--ARDEFIQHAD----RVRSLFLDPP-VTNEYTLHTT 283
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 333
+ PD + +++V + +D V + E+I+ +
Sbjct: 284 IN-PDMDAARSYVVDDWEVPADEVERGFERIETS 316
>gi|448343822|ref|ZP_21532739.1| flap endonuclease-1 [Natrinema gari JCM 14663]
gi|445621905|gb|ELY75370.1| flap endonuclease-1 [Natrinema gari JCM 14663]
Length = 325
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 172/329 (52%), Gaps = 22/329 (6%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
++E F+ G +A+DA +Y++L V T ++ T G ++L G+ +
Sbjct: 12 IEETPFDEIEG-VVAVDAHNWLYRYLTTTVKWTDSDTYTTADGTEVANLVGIVQGLPKFF 70
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E + P+ VFDG P +LK E+ R +R L A E G+ I + RT ++T
Sbjct: 71 EHDITPVMVFDGGPSELKHDEIESRREQRRSYEAQLETAREEGDAVAIAQLESRTQRLTP 130
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + LL+L+ VP+VEAP+E EAQ A + K G V SED D+L FG+P LR L
Sbjct: 131 TIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQL- 189
Query: 197 DPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P +M+ E L +LT++Q ID IL G D+ + + GIG +TA+ I +HG
Sbjct: 190 --TSKGAPELMDLEAT--LAHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAAITEHG 245
Query: 256 SIETILE--NINRERYQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
+ ++LE ++ E Y + R+LF++P+ VTD+ + + PD E +++
Sbjct: 246 DLWSVLEARGVHVE---------YGDRVRQLFRDPD-VTDDYEFEST-VDPDLEAAKSYV 294
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
+ E ++ V + +I+ + ++ R
Sbjct: 295 IDEWSVDAGEVERGFGRIEESVTQTGLDR 323
>gi|385803787|ref|YP_005840187.1| flap endonuclease Fen1 [Haloquadratum walsbyi C23]
gi|339729279|emb|CCC40515.1| flap endonuclease Fen1 [Haloquadratum walsbyi C23]
Length = 326
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 19/334 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAG 59
MG L +L A ++ F+ G IA+DA +Y++L V T T E+G
Sbjct: 1 MGNAALRQLAA------LESVAFDDISGSVIAVDAHNWLYRYLTTTVKFTSDAAYTTESG 54
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++L G+ + E + P++VFDG +LK +E+ +R R +A + A A E G
Sbjct: 55 VEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAAAEERG 114
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + RT ++T+ ++ + LL + VP++EAP+E EAQ A + G V V SE
Sbjct: 115 DELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVDYVGSE 174
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+L FGAP +R L +S+ P + ++ L+ NLT +Q +D+ IL G D+ D I
Sbjct: 175 DYDTLLFGAPYTVRQL---TSKGDPEL-MDLQTTLKNQNLTREQLVDVAILCGTDFNDGI 230
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
GIG TA+ I HG + ++L+ R+ + D R LF +P VT+E L
Sbjct: 231 SGIGPATAISAINDHGDLWSVLD--ARDEFIQHAD----RVRSLFLDPP-VTNEYTLHTA 283
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 333
+ PD + +++V + +D V + E+I+ +
Sbjct: 284 IN-PDMDAARSYVVDDWEVPADEVERGFERIETS 316
>gi|409722869|ref|ZP_11270258.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
gi|448722908|ref|ZP_21705436.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
gi|445788575|gb|EMA39284.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
Length = 325
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 20/323 (6%)
Query: 23 FESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
F G +AIDA +Y++L V T + T AGE ++L G+ + E +
Sbjct: 17 FSELAGATVAIDAHNWLYRYLTTTVKWTSDSVYTTAAGEEVANLMGVVQGLPKFFEHDIT 76
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
P++VFDG DLK E+ +R ++R + + AEA EAGN + + RT ++T ++
Sbjct: 77 PVFVFDGGVTDLKTDEIEQRRAEREEVEERAAEAREAGNAIEAARLESRTQRLTDTIHET 136
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
+ LL L+ VPVVEAP+E EAQ A + +SG V SED D+L FG+PR LR L SS
Sbjct: 137 TRELLSLLDVPVVEAPAEGEAQAAHMARSGTVDYAGSEDYDTLLFGSPRTLRKLT--SSG 194
Query: 202 KIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
M+FE L + +LT + +D+ IL G D+ + + GIG +TA+KL+R+HG + L
Sbjct: 195 DPECMDFEAT--LADHDLTWEGLVDVGILCGTDFNEGVSGIGPKTAVKLVREHGDLWAAL 252
Query: 262 ENINRERYQIPEDWPYQEA---RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318
E ED + A R LF P+V E I +PD ++ E
Sbjct: 253 E---------AEDAYVENADLVRELFLNPDVTDVEFDPDI---SPDLAAARRYVTDEWEI 300
Query: 319 NSDRVTKAIEKIKAAKNKSSQGR 341
D V + E+I+ + +S R
Sbjct: 301 PEDEVDRGFERIEESVVQSGLDR 323
>gi|448337894|ref|ZP_21526967.1| flap endonuclease-1 [Natrinema pallidum DSM 3751]
gi|445624854|gb|ELY78227.1| flap endonuclease-1 [Natrinema pallidum DSM 3751]
Length = 325
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 170/326 (52%), Gaps = 16/326 (4%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
++E F+ G +A+DA +Y++L V T + T G ++L G+ +
Sbjct: 12 IEEIPFDDIEG-TVAVDAHNWLYRYLTTTVKWTDSAKYTTGDGTEVANLVGIVQGLPKFF 70
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTK 136
E + P+ VFDG P +LK E+ R +R L A E G+ I + RT ++T
Sbjct: 71 EHDITPVMVFDGGPSELKDDEIESRREQRRSYEAQLETAREEGDAVAIAQLESRTQRLTP 130
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+ + LL+L+ VP+VEAP+E EAQ A + K G V SED D+L FG+P LR L
Sbjct: 131 TIQETSRDLLRLLDVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQL- 189
Query: 197 DPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P +M+ E L + +LT++Q ID IL G D+ + + GIG +TA+ I +HG
Sbjct: 190 --TSKGDPELMDLEAT--LAQHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAISAITEHG 245
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ + LE R + D R+LF++P+ VTD+ + + PD E +++ E
Sbjct: 246 DLWSALE--ARGDHVEHGD----RVRQLFRDPD-VTDDYEFEST-VDPDLEAAKSYVTDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G ++ V + E+I+ + ++ R
Sbjct: 298 WGVDAGEVERGFERIEESVTQTGLDR 323
>gi|397774993|ref|YP_006542539.1| flap structure-specific endonuclease [Natrinema sp. J7-2]
gi|397684086|gb|AFO58463.1| flap structure-specific endonuclease [Natrinema sp. J7-2]
Length = 325
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 166/316 (52%), Gaps = 21/316 (6%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T ++ T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDTYTTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK E+ R +R L A E G+ I + RT ++T + + LL+L+
Sbjct: 84 PSELKHDEIESRREQRRSYEAQLETAREEGDAVAIAQLESRTQRLTPTIQETSRELLRLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + K G V SED D+L FG+P LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLFGSPLTLRQL---TSKGAPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE--NINR 266
E L +LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE ++
Sbjct: 201 EAT--LAHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAAITEHGDLWSVLEARGVHV 258
Query: 267 ERYQIPEDWPYQE-ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 325
E Y + R+LF++P+ VTD+ + + PD E ++++ E ++ V +
Sbjct: 259 E---------YGDRVRQLFRDPD-VTDDYEFEST-VDPDLEAAKSYVIDEWSVDAGEVER 307
Query: 326 AIEKIKAAKNKSSQGR 341
+I+ + ++ R
Sbjct: 308 GFGRIEESVTQTGLDR 323
>gi|448466285|ref|ZP_21599082.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
gi|445814415|gb|EMA64379.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
Length = 325
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 166/326 (50%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 AIRDVAFTEIEGSVVAVDAHNWLYRYLTTTVKWTSDEAYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVADRREKREAAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DAIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L++L +D +L G D+ + +RGIG +TA+K +R+HG
Sbjct: 191 ---TSKGDPEL-MDLAATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +L+ E IP + R LF +P + + PD + ++V E
Sbjct: 247 DLWGVLDARGAE---IPN---AEAIRELFMDPPATDVDVDTAVN---PDVDAAREYVVDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G +D V + E+I ++ ++ R
Sbjct: 298 WGVAADEVERGFERIAESQVQTGLDR 323
>gi|148508143|gb|ABQ75935.1| flap structure-specific endonuclease [uncultured haloarchaeon]
Length = 337
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 19/334 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAG 59
MG L +L A ++ F+ G IA+DA +Y++L V T T E+G
Sbjct: 12 MGNAALRQLAA------LESVAFDDISGSVIAVDAHNWLYRYLTTTVKFTSDAAYTTESG 65
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++L G+ + E + P++VFDG +LK +E+ +R R +A + A A E G
Sbjct: 66 VEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAAAEERG 125
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + RT ++T+ ++ + LL + VP++EAP+E EAQ A + G V V SE
Sbjct: 126 DELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVDYVGSE 185
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+L FGAP +R L +S+ P + ++ L+ NLT +Q +D+ IL G D+ D I
Sbjct: 186 DYDTLLFGAPYTVRQL---TSKGDPEL-MDLQTTLKNQNLTREQLVDVAILCGTDFNDGI 241
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIK 299
GIG TA+ I HG + ++L+ R+ + D R LF +P VT+E L
Sbjct: 242 SGIGPATAISAINDHGDLWSVLD--ARDEFIQHAD----RVRSLFLDPP-VTNEYTLHTA 294
Query: 300 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 333
+ PD + +++V + +D V + E+I+ +
Sbjct: 295 IN-PDMDAARSYVVDDWEVPADEVERGFERIETS 327
>gi|448534324|ref|ZP_21621652.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
gi|445704806|gb|ELZ56713.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
Length = 325
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 170/329 (51%), Gaps = 20/329 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVPFAEIEGSVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVAERREKRERAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L+L +D +L G D+ + +RGIG +TA+ +R+HG
Sbjct: 191 ---TSKGDPEL-MDLAATLSDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEP---EVVTDEEQLQIKWSAPDEEGLINFL 312
+ +L+ + E IP + R LF +P +V D + PD E ++
Sbjct: 247 DLWGVLDARDAE---IPN---AEAIRELFMDPPATDVAVDAD------VNPDVEAAREYV 294
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
V E G + D V + E+I ++ ++ R
Sbjct: 295 VDEWGVDGDEVERGFERIAESQVQTGLDR 323
>gi|284164367|ref|YP_003402646.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
5511]
gi|284014022|gb|ADB59973.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
5511]
Length = 325
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 164/314 (52%), Gaps = 17/314 (5%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T +++ T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTDSDVYTTADGTEVANLVGIVQGLPKFFENDITPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+ +
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLEVAREEGDQVAIAQLESRTQRLTPTIQETSRELLRRL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEF 208
VP+VEAP+E EAQ A + + G V SED D+L FG+P LR L +S+ P +M+
Sbjct: 144 DVPIVEAPAEGEAQAAHMVRRGDADYVGSEDYDALLFGSPLTLRQL---TSKGDPELMDL 200
Query: 209 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE- 267
E L+ +LT++Q ID IL G D+ + + GIG +TA+K I +HG + ++LE+
Sbjct: 201 EAT--LDHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIKAITEHGDLWSVLEDRGAHI 258
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
Y R+LF++P VTD+ + PD E ++ E + V +
Sbjct: 259 EYG-------DRVRQLFRDPN-VTDDYEFDTDLD-PDLEAAREYVCEEWRVDEGEVDRGF 309
Query: 328 EKIKAAKNKSSQGR 341
E+I+ + ++ R
Sbjct: 310 ERIEESVTQTGLDR 323
>gi|448365125|ref|ZP_21553668.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
gi|445656129|gb|ELZ08969.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
Length = 325
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 15/313 (4%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSAKYTTGDGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLELL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +
Sbjct: 144 DVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDP-ERMD 199
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRER 268
+ L+ LT++Q ID IL G D+ + + GIG +TA+ I +HG + +LE + R
Sbjct: 200 LQATLDHHGLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWGVLEARGDSIR 259
Query: 269 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
Y R LF+EP VTD+ + PD + ++ E G + + + E
Sbjct: 260 YG-------DRVRELFREPN-VTDDYEFSTTLD-PDLDAAREYVTDEWGVDPGEIERGFE 310
Query: 329 KIKAAKNKSSQGR 341
+I+ + ++ R
Sbjct: 311 RIEESVTQTGLDR 323
>gi|448578528|ref|ZP_21643963.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
gi|445727069|gb|ELZ78685.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
Length = 326
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 165/316 (52%), Gaps = 13/316 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 ALSEVPFDEVAGSVVAVDAHNWLYRYLTTTVKWTNSEKYTTSEGEEVANLVGIVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG ++K E+AKR +R A + L EA EAG+ + + RT ++T
Sbjct: 71 FEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEEAREAGDAVEAARMEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL L+ VPVVEAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 DTIQETSRELLSLLDVPVVEAPAEGEAQASYMARKGDADYVGSEDYDTLLFGAPYTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L++ ++T +Q +D+ +L G D+ + I G+G +TA+K +++HG
Sbjct: 191 ---TSKGNPEL-MDLDATLDKHDITWEQLVDIAMLCGTDFNEGISGVGPKTAVKEVKKHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +LE IP R F +P VTDE PD E ++
Sbjct: 247 DLWAVLEARGD---SIPN---ADRVREFFLDPP-VTDEYDYDTD-IDPDVEAARKYVTET 298
Query: 316 NGFNSDRVTKAIEKIK 331
+ D V + E+I+
Sbjct: 299 WEVDPDEVRRGFERIE 314
>gi|448454659|ref|ZP_21594212.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
gi|445814746|gb|EMA64705.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
Length = 325
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 167/326 (51%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++++ F+ G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 AIRDVAFDEIEGSVVAVDAHNWLYRYLTTTVKWTSDEAYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG +LK E+A R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTELKADEVADRREKREAAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DAIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L++L +D +L G D+ + +RGIG +TA+K +R+HG
Sbjct: 191 ---TSKGDPEL-MDLAATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +L+ E IP + R LF +P + + PD + ++V E
Sbjct: 247 DLWGVLDARGVE---IPN---AEAIRELFMDPPATDVDVDTAVN---PDVDAAREYVVDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G +D V + E+I ++ ++ R
Sbjct: 298 WGVAADEVERGFERIAESQVQTGLDR 323
>gi|452206818|ref|YP_007486940.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
gi|452082918|emb|CCQ36195.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
Length = 327
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 165/327 (50%), Gaps = 16/327 (4%)
Query: 18 MKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAGEVTSHLQGMFTRTIRLL 76
++ + F G +A+DA +Y++L R T ++ T E+GE ++L G+ +
Sbjct: 12 IEPKPFGELAGSVVAVDAHNWLYRYLTTTVRFTSSDTYTTESGEEVANLVGVVQGLPKFF 71
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED-IEKFSKRTVKVT 135
EA + P++VFDG +LK E+ R +R D+L A I RT ++T
Sbjct: 72 EADVTPVFVFDGGVAELKDDEVESRREQRERYEDELDAARAGEADAAEIATLESRTQRLT 131
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL L+ VPVVEAP+E EAQ A + + G V SED D+L GAP LR L
Sbjct: 132 ETIQTTTRELLSLLDVPVVEAPAEGEAQAAYMARYGDVDYAGSEDYDTLLLGAPYTLRGL 191
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P M+FE + LE+L LT ++ +D IL G D+ + I GIG +TA+KL+R+H
Sbjct: 192 ---TSKGDPECMDFE--RTLEDLGLTWEELVDAAILMGTDFNEGIDGIGPKTAVKLLREH 246
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
G + L+ IP R +F +P VTDE + PD + ++
Sbjct: 247 GDLWGALDARGE---SIPN---ADRIREMFLDP-AVTDEYDYDTE-IEPDMDAARQYVTD 298
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
++ V + E+I+ + ++ R
Sbjct: 299 TWEVPAEEVARGFERIEESVVQTGLDR 325
>gi|448499403|ref|ZP_21611330.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
gi|445697358|gb|ELZ49423.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
Length = 325
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 20/329 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVSFAEIEGGVVAVDAHNWLYRYLTTTVKWTSEEKYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLIPVMVFDGAVTDLKADEVAERREKREAAEERKAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VPVVEAP+E EAQCA + +G V SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLELLDVPVVEAPAEGEAQCAQMAAAGTVDHAGSEDYDTLLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L L +D+ +L G D+ + +RG+G +TA+K + +HG
Sbjct: 191 ---TSKGDPEL-MDLAATLSDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVTEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEP---EVVTDEEQLQIKWSAPDEEGLINFL 312
+ +L+ + E IP + R LF +P EV D + PD ++
Sbjct: 247 DLWGVLDARDAE---IPN---AEAIRELFMDPPATEVAVDAD------VNPDVAAAREYV 294
Query: 313 VSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
V E G + D V + E+I ++ ++ R
Sbjct: 295 VDEWGVDPDEVERGFERIAESQVQTGLDR 323
>gi|399576495|ref|ZP_10770250.1| flap endonuclease-1 [Halogranum salarium B-1]
gi|399237939|gb|EJN58868.1| flap endonuclease-1 [Halogranum salarium B-1]
Length = 326
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 13/316 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ + F+ G +A+DA +Y++L V T T G+ ++L G+ +
Sbjct: 11 ALSDVSFDELGGSVVAVDAHNWLYRYLTTTVKWTSDAKYTTSDGDEVANLVGLVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + PI+VFDG +LK E+ R ++ A + L EA E G+ + + RT ++T
Sbjct: 71 FEHDLTPIFVFDGGVTELKDAEVEARREQKEKAQERLEEARERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
++ + L L+ VP +EAP+E EAQ + + + G V SED D+L FGAP LR L
Sbjct: 131 AVIHETTRDFLDLLDVPYIEAPAEGEAQASYMARRGDADYVGSEDYDTLLFGAPFTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++ L + +++ +Q +D+ IL G D+ I+GIG +TALK +++HG
Sbjct: 191 ---TSKGDPEL-MDLDATLAKHDISYEQLVDIAILVGTDFNPGIKGIGPKTALKAVKEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +L+ R+ + D R LF +P V D + PD E +++V E
Sbjct: 247 DLWGVLD--ARDLHIDHAD----RIRDLFLDPPVTDDYDVDLD--IDPDLEAARSYVVDE 298
Query: 316 NGFNSDRVTKAIEKIK 331
++D V + E+I+
Sbjct: 299 WEVDADEVARGFERIE 314
>gi|448352039|ref|ZP_21540831.1| flap endonuclease-1 [Natrialba taiwanensis DSM 12281]
gi|445631838|gb|ELY85062.1| flap endonuclease-1 [Natrialba taiwanensis DSM 12281]
Length = 316
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 13/261 (4%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSAKYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLQLL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +
Sbjct: 144 DVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDP-ERMD 199
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRER 268
+ L+ +LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE + R
Sbjct: 200 LQATLDHHDLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIR 259
Query: 269 YQIPEDWPYQEARRLFKEPEV 289
Y R LF+EP V
Sbjct: 260 YG-------DRVRELFREPNV 273
>gi|448362827|ref|ZP_21551431.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
gi|445647449|gb|ELZ00423.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
Length = 291
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 13/261 (4%)
Query: 31 IAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+A+DA +Y++L V T + T G ++L G+ + E + P+ VFDG
Sbjct: 24 VAVDAHNWLYRYLTTTVKWTNSAKYTTADGTEVANLVGIVQGLPKFFENDVVPVMVFDGG 83
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P +LK+ E+ R +R + L A E G++ I + RT ++T + + LL+L+
Sbjct: 84 PSELKEDEIESRRDQRRTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQETSRELLELL 143
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
VP+VEAP+E EAQ A + + G V SED D+L FGAP LR L +S+ P +
Sbjct: 144 DVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQL---TSKGDP-ERMD 199
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRER 268
+ L+ LT++Q ID IL G D+ + + GIG +TA+ I +HG + ++LE + R
Sbjct: 200 LQATLDHHGLTLEQLIDAAILIGTDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIR 259
Query: 269 YQIPEDWPYQEARRLFKEPEV 289
Y R LF+EP V
Sbjct: 260 YG-------DRVRELFREPNV 273
>gi|221222240|gb|ACM09781.1| Flap endonuclease 1-B [Salmo salar]
Length = 109
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ ++YFGRKIAIDASM +YQFL+ V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGN-VLQNENGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRA 106
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRA 105
>gi|448431107|ref|ZP_21584935.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
gi|445688254|gb|ELZ40519.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
Length = 325
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 166/326 (50%), Gaps = 14/326 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ F G +A+DA +Y++L V T E T G ++L G+ +
Sbjct: 11 SIRDVPFAEIEGSVVAVDAHNWLYRYLTTTVKWTADEKYTTADGVEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P+ VFDG DLK E+A+R KR A + A A E G+ + + RT ++T
Sbjct: 71 FEHDLVPVMVFDGAVTDLKADEVAERREKRERAEERRAAAEERGDAVEAARLEARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ + LL+L+ VP+VEAP+E EAQCA + +G SED D+L FGAP LR L
Sbjct: 131 DTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTADHAGSEDYDALLFGAPTTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+S+ P + ++A L +L+L +D +L G D+ + +RGIG +TA+ +R+HG
Sbjct: 191 ---TSKGDPEL-MDLAATLSDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ +L+ + E IP + R LF +P + PD E ++V E
Sbjct: 247 DLWGVLDARDAE---IPN---AEAIRELFMDPPAADVAVDADVN---PDVEAARAYVVDE 297
Query: 316 NGFNSDRVTKAIEKIKAAKNKSSQGR 341
G + D V + E+I ++ ++ R
Sbjct: 298 WGVDGDEVERGFERIAESQVQTGLDR 323
>gi|310831026|ref|YP_003969669.1| putative DNA endonuclease [Cafeteria roenbergensis virus BV-PW1]
gi|309386210|gb|ADO67070.1| putative DNA endonuclease [Cafeteria roenbergensis virus BV-PW1]
Length = 321
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 10/235 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L+K + N S +K+AID S+ +YQ +I + +G + L N GE
Sbjct: 1 MGIKKLSKYI--NEDNLFTTINLSSLAYKKVAIDISVLLYQIIISIRNSGDD-LRNNKGE 57
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+TSH+ G+F +T+ L+ + PIY+FDG+PP+ K+ + R + A D L N
Sbjct: 58 ITSHILGLFNKTVWLINNNIIPIYIFDGKPPEFKQDTIQNRRDIKKKAFDKLKNC---DN 114
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++D K+ KRT ++++ + K LL LMG+P ++A EA+ CA LC+ V V +ED
Sbjct: 115 EKDRIKYFKRTTSLSRKQIIESKELLDLMGIPYLQADGEADILCAKLCEKNIVDYVLTED 174
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
+D LTFG + ++ + KI + IL++ ++T QFI CI+ GCDY
Sbjct: 175 IDILTFGGTKIIKSIFKEGDIKI----IDKLTILKKYDITYKQFIIFCIILGCDY 225
>gi|448634703|ref|ZP_21675101.1| flap endonuclease-1 [Haloarcula vallismortis ATCC 29715]
gi|445749676|gb|EMA01121.1| flap endonuclease-1 [Haloarcula vallismortis ATCC 29715]
Length = 326
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 164/316 (51%), Gaps = 15/316 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM-LTNEAGEVTSHLQGMFTRTIRL 75
++ + F G +A+DA +Y++L + +E T GE ++L G+ +
Sbjct: 11 ALSDVSFGDLGGSVVAVDAHNWLYRYLTTTVKFTSEAKYTTSGGEEVANLIGVIQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG DLK E+ +R +R +L A +AG+ + K RT ++T
Sbjct: 71 FEHDLTPVFVFDGAVTDLKDDEVERRREQREKYESELEAARKAGDSTRVAKLDSRTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
D + LL+L+ VP+V+AP+E E Q + + + G V V +ED D+L FGAP LR +
Sbjct: 131 DTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDALLFGAPMTLRQI 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+FE L + +LT +Q +D IL G D+ + I GIG +TA+K + +H
Sbjct: 191 ---TSKGDPELMDFEAT--LSQHDLTWEQLVDAAILMGTDFNEGISGIGPKTAVKELHEH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
G + +LE R + D R LF +P VTD+ + PD + F+
Sbjct: 246 GDLYAVLE--ARSEHIDHAD----RIRDLFLDP-AVTDDYVIPDS-VDPDIDAARAFVTE 297
Query: 315 ENGFNSDRVTKAIEKI 330
+ ++D V + ++I
Sbjct: 298 QWEVDADEVARGFKRI 313
>gi|353228411|emb|CCD74582.1| putative flap endonuclease-1 [Schistosoma mansoni]
Length = 133
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+L FG P LRHL +RK+ + EF + +LE L LTMDQFIDLCIL GCDY D+IR
Sbjct: 1 MDALAFGTPVLLRHLTFSEARKMAIQEFNLTSVLEGLGLTMDQFIDLCILLGCDYVDTIR 60
Query: 241 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
GIG + AL L+ ++ SI+ +L+NI++ +Y +P+DWPY++A++LF PE VTD +++
Sbjct: 61 GIGPKKALDLLHKYQSIDCVLKNIDKSKYIVPDDWPYEDAKKLFLNPE-VTDPSSIEV 117
>gi|448407650|ref|ZP_21573845.1| flap endonuclease-1 [Halosimplex carlsbadense 2-9-1]
gi|445674900|gb|ELZ27435.1| flap endonuclease-1 [Halosimplex carlsbadense 2-9-1]
Length = 326
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 164/327 (50%), Gaps = 15/327 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAGEVTSHLQGMFTRTIRL 75
++ E F+ G +A+DA +Y++L R T + T GE ++L G+ +
Sbjct: 11 AIDEVPFDDLSGSLVAVDAHNWLYRYLTTTVRWTNDSIYTTADGEEVANLVGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG DLK E+ +R R + L +A E G+ + + +T ++T
Sbjct: 71 FEHDITPVFVFDGSVVDLKDDEVEQRREDREKREEQLEQAREEGDGVAVARLESQTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ +L+L+ VPV+EAP+E EAQ + + G V V +ED D+L GAP LR L
Sbjct: 131 DTILSTTREVLELLDVPVIEAPAEGEAQATHMAREGAVDYVGTEDYDALLLGAPLTLRQL 190
Query: 196 MDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
+S+ P +M+FE L++ ++T +Q +D IL G D+ + I G G +TA+ +R+H
Sbjct: 191 ---TSKGDPELMDFEAT--LDDRDITWEQLVDAAILMGTDFNEGISGYGPKTAVTAVREH 245
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 314
G I + E + Y D R LF P VTD+ + + PD E F+
Sbjct: 246 GDIWGVFE--AEDVYVDNAD----RIRDLFLNP-AVTDDYEFDRE-VEPDLEAARAFVCE 297
Query: 315 ENGFNSDRVTKAIEKIKAAKNKSSQGR 341
E D V + E+I+ + ++ R
Sbjct: 298 EWEVAEDEVERGFERIEQSVVQTGLDR 324
>gi|442753119|gb|JAA68719.1| Putative flap structure-specific endonuclease 1 [Ixodes ricinus]
Length = 113
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL+K++ADNAP ++KE +SYFGRKIAIDASM +YQFLI V R MLTN GE
Sbjct: 1 MGITGLSKVIADNAPSAIKEGDIKSYFGRKIAIDASMCLYQFLIAV-RQENNMLTNSDGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSK 104
TSHL G F RTIR++E G+KP+YVFDG+PP +K EL KR K
Sbjct: 60 TTSHLVGFFYRTIRMIENGIKPVYVFDGKPPGMKSSELEKRQRK 103
>gi|354611070|ref|ZP_09029026.1| Flap structure-specific endonuclease [Halobacterium sp. DL1]
gi|353195890|gb|EHB61392.1| Flap structure-specific endonuclease [Halobacterium sp. DL1]
Length = 327
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 22/340 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAG 59
MG L +L A ++E F G +A+D +Y++L V T ++ T AG
Sbjct: 1 MGNADLRQLAA------IEEVPFADVEGSVVAVDVHNWLYKYLTTTVQWTSDDVYTTAAG 54
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++L G+ + E + P++V+DG +LK +E+ +R +R + + LA+A EAG
Sbjct: 55 TEVANLVGVVQGLPKFFEHDLTPVFVWDGGVTELKDEEIEERRDQREEYEEQLADAREAG 114
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-S 178
+ + + RT ++T+ ++ + L L+ VP VEAP+E EAQ + + + A S
Sbjct: 115 DHLEAARLDARTQRLTETIHETTRELFDLLDVPQVEAPAEGEAQASYMARVDDAVDYAGS 174
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPV-MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
+D D L G+P LR L +S+ P M+F+ L+ +LT +Q +D+ IL G D+
Sbjct: 175 DDYDCLLLGSPLTLRQL---TSKGDPERMDFQAT--LDRHDLTWEQLVDVGILCGTDFNP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
I G G +TALK I +HG + +L+ + Y D R LF P+ VTD+ ++
Sbjct: 230 GIDGFGPKTALKAIHEHGDLWAVLD--AEDEYVEYGD----RIRELFLNPD-VTDDYDIE 282
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKS 337
S PD F+ + ++D V + +I+ A ++
Sbjct: 283 TALS-PDVAAAREFVTEQWEVDADEVERGFSRIEEAVTQT 321
>gi|15790386|ref|NP_280210.1| flap endonuclease-1 [Halobacterium sp. NRC-1]
gi|169236120|ref|YP_001689320.1| flap endonuclease-1 [Halobacterium salinarum R1]
gi|28380023|sp|Q9HQ27.1|FEN_HALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226700952|sp|B0R5F5.1|FEN_HALS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10580870|gb|AAG19690.1| DNA repair protein [Halobacterium sp. NRC-1]
gi|167727186|emb|CAP13972.1| flap endonuclease Fen1 [Halobacterium salinarum R1]
Length = 327
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 22/331 (6%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+++E F G +A+DA +Y++L V TG ++ T G ++L G +
Sbjct: 11 AIEETPFADLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E G+ P++V+DG +LK E+A R +R + L +A EAG+ + + RT ++T
Sbjct: 71 FEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEAARLDARTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTFGAPRFLRH 194
++ + L L+ +P VEAP+E EAQ A + ++ A S+D D L G+P LR
Sbjct: 131 PTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQ 190
Query: 195 LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
L SS +M+F+ L E +LT +Q +D+ IL G D+ I G G TAL I +H
Sbjct: 191 LT--SSGHPELMDFD--ATLAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEH 246
Query: 255 GSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN---- 310
G + +L R LF P+ VTD+ + PD I+
Sbjct: 247 GDLWDVLAAEGEHVAH------GDRIRELFLNPD-VTDDYVID-----PDVSPAIDAARA 294
Query: 311 FLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 341
F+ E ++D V + E+I AA ++ R
Sbjct: 295 FVTDEWEVDADAVARGFERIDAAAAQTGLDR 325
>gi|257388818|ref|YP_003178591.1| flap endonuclease-1 [Halomicrobium mukohataei DSM 12286]
gi|257171125|gb|ACV48884.1| XPG I domain protein [Halomicrobium mukohataei DSM 12286]
Length = 326
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 161/318 (50%), Gaps = 13/318 (4%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAGEVTSHLQGMFTRTIRL 75
S+++ FE +A+DA +Y++L R T E T G ++L G+ +
Sbjct: 11 SLEDVPFEELSDSVVAVDAHNWLYRYLTTTVRFTSDEKYTTSDGTEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 135
E + P++VFDG +LK E+ +R R + L A E G+ + + + +T ++T
Sbjct: 71 FEHDLTPVFVFDGGVTELKDDEVEQRREAREAREEKLEAARERGDSKAVARLDSQTQRLT 130
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+ +L+L+ VPVV+AP+E EAQ A + + V V +ED D+L GAP LR L
Sbjct: 131 DTILTTTREVLRLLDVPVVDAPAEGEAQAAHMARQNVVDYVGTEDYDALLLGAPLTLRQL 190
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
SS +M+F+ L+ +T +Q +D IL G D+ I G+G +TA+KL+++HG
Sbjct: 191 T--SSGDPELMDFQAT--LDHHGITWEQLVDAAILMGTDFNPGIDGVGPKTAIKLVKEHG 246
Query: 256 SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 315
+ L+ R+ + D R LF +P VTD+ L + PD + ++ E
Sbjct: 247 DLWGALD--ARDAHVEHGD----RIRELFLDP-AVTDDYDLDLA-VNPDLDAAREYVTGE 298
Query: 316 NGFNSDRVTKAIEKIKAA 333
+ V +A E I+A+
Sbjct: 299 WEVDEGEVARAFEHIEAS 316
>gi|300711017|ref|YP_003736831.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|448296888|ref|ZP_21486938.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|299124700|gb|ADJ15039.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|445580565|gb|ELY34943.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
Length = 325
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 164/316 (51%), Gaps = 14/316 (4%)
Query: 23 FESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
FE G +A+DA +Y++L V T ++ T G ++L G+ + E +
Sbjct: 17 FEDLSGAVVAVDAHNWLYRYLTTTVKWTADDVYTTAEGTEVANLVGIVQGLPKFFENDLV 76
Query: 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 141
P++VFDG DLK E+ R + + A + A E G++ + + RT ++T
Sbjct: 77 PVFVFDGVVTDLKDGEIDDRRAAKERAAAEARNARERGDRVEAARLEARTQRLTDTIQRT 136
Query: 142 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
+ LL+L+ VP+VEAP+E EAQ A + KS V +ED D+L FGAP LR L +S+
Sbjct: 137 TRELLELLDVPIVEAPTEGEAQAAHMAKSADVDYAGTEDYDALLFGAPLTLRQL---TSK 193
Query: 202 KIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 261
P ++A L LT +Q +D+ IL G D+ + + G+G +TA+K I +HG + +L
Sbjct: 194 GDPEC-MDLAATLAAHELTHEQLVDVGILCGTDFNEGVHGMGPKTAVKAIHEHGDLAGVL 252
Query: 262 ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
+ + ++ + R LF +P+ VTD+ S PD G + V++ +D
Sbjct: 253 DARDAVVGEM------EAVRELFLQPD-VTDDYGFDTALS-PDVAGAREY-VADWEIPAD 303
Query: 322 RVTKAIEKIKAAKNKS 337
V++ E+I+ + ++
Sbjct: 304 EVSRGFERIEESVTQT 319
>gi|209733812|gb|ACI67775.1| Flap endonuclease 1-B [Salmo salar]
Length = 116
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 1/100 (1%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL KL+AD AP ++KEQ ++YFGRKIAIDASM +YQFL+ V + G +L NE GE
Sbjct: 1 MGIHGLAKLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGN-VLQNENGE 59
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAK 100
TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL K
Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEK 99
>gi|76802527|ref|YP_327535.1| flap endonuclease-1 [Natronomonas pharaonis DSM 2160]
gi|121696716|sp|Q3IPG8.1|FEN_NATPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|76558392|emb|CAI49983.1| flap endonuclease Fen1 [Natronomonas pharaonis DSM 2160]
Length = 328
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 145/277 (52%), Gaps = 15/277 (5%)
Query: 17 SMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRL 75
+++ + F+ G +A+DA +Y++L V T +E T GE ++L G+ +
Sbjct: 11 AIEPKPFDELGGSVVAVDAHNWLYRYLTTTVKFTRSEAYTTADGEEVANLIGVVQGLPKF 70
Query: 76 LEAGMKPIYVFDGQPPDLKKQELAKRYSKRA--DATDDLAEAVEAGNKEDIEKFSKRTVK 133
E + P++VFDG DLK E+ KR +R +A + A+ + + +I RT +
Sbjct: 71 FEHDVTPVFVFDGGVSDLKADEVEKRRDQRERYEAQLEAAKERDETDAAEIAALESRTQR 130
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T + + LL + VPVVEAP+E EAQ A + + G V SED D+L GAP LR
Sbjct: 131 LTDTIVETTRELLARLDVPVVEAPAEGEAQAAHMARRGDADYVGSEDYDALLLGAPYTLR 190
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
L S+ M+FE L +L+ + +D IL G D+ + + G+G +TA+KLI +
Sbjct: 191 GLT--SNGDPECMDFEAT--LSTHDLSWEGLVDAAILMGTDFNEGLSGVGPKTAVKLIHE 246
Query: 254 HGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEV 289
HG + ++L + +D P+ + R LF +P V
Sbjct: 247 HGDLRSVLAARD-------DDIPHADRIRELFLDPAV 276
>gi|222445719|ref|ZP_03608234.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
DSM 2375]
gi|222435284|gb|EEE42449.1| XPG I-region [Methanobrevibacter smithii DSM 2375]
Length = 187
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 119/200 (59%), Gaps = 14/200 (7%)
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
+MG+P +EA E EAQ A L ++G +AVAS+D D L FGA R +R+L S+ + +E
Sbjct: 1 MMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAINSN--LGNLE 58
Query: 208 -FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 266
+ + ++L+EL++ +Q ID+ IL G D+ + ++G+G +TALKL ++ G +E L +
Sbjct: 59 YYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKK-GELENKLAKLQE 117
Query: 267 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 326
+ E R +F V TD +I+W P + +I+FL E+GF+ DRV+KA
Sbjct: 118 KSSH-----DISEVREIFLNHNVNTD---YKIRWKKPAKNDIIDFLCEEHGFSQDRVSKA 169
Query: 327 IEKIKAAKNKSSQGRLESFF 346
+K+K SSQ LE +F
Sbjct: 170 CDKLKNL--NSSQKSLEDWF 187
>gi|47180383|emb|CAG14230.1| unnamed protein product [Tetraodon nigroviridis]
Length = 103
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 78/102 (76%)
Query: 100 KRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 159
K+ ++A+A LA+A +AG +E+IEKF+KR VKVTKQHND+CK+LL LMGVP +EAP E
Sbjct: 1 KKQGEKAEAEKLLAQAQQAGEQENIEKFTKRLVKVTKQHNDECKKLLTLMGVPYIEAPCE 60
Query: 160 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 201
AEA CAAL K+G+V+ A+EDMD LTFG LRHL ++
Sbjct: 61 AEASCAALAKAGKVFGTATEDMDGLTFGTNVLLRHLTASEAK 102
>gi|255634420|gb|ACU17575.1| unknown [Glycine max]
Length = 95
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 348
V+TDE++L IKWS+PDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKP
Sbjct: 2 VITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFFKP 61
Query: 349 VANTSAPIKRKE-PENTPKAT 368
N S PIKRKE P N K T
Sbjct: 62 TVNPSVPIKRKETPVNNAKET 82
>gi|327409739|ref|YP_004347159.1| putative Flap endonuclease [Lausannevirus]
gi|326784913|gb|AEA07047.1| putative Flap endonuclease [Lausannevirus]
Length = 363
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 113/389 (29%), Positives = 165/389 (42%), Gaps = 83/389 (21%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI L K+L +P + G+++ IDA I++FL G G
Sbjct: 1 MGITDLNKILKSESPDCFIVRPISDLSGKRVGIDAFQWIFRFLRASGDEGV--------- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDG-------------------------------- 88
L + L + G+ P VFDG
Sbjct: 52 ----LASFLSHLCVLRKNGVLPFCVFDGPGAVPEKEAERKKRKEDREELVRKKDGLQKIF 107
Query: 89 ---------QPPDLKKQELAKRYSKRADATDDLAE--AVEAGNKEDIEKFSKRTVKVTKQ 137
+ P ++E K K+ AT DL++ E I + K++V +T +
Sbjct: 108 EEFDEEETDEVPKELQEEARKLLQKKKYATTDLSDPHTFTQTISESIATYEKQSVPLTNE 167
Query: 138 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
+ K LL ++GV V A E + AA G+++ V+S D D +GAP F +D
Sbjct: 168 RIESVKNLLDVLGVRYVTAEGEGDGVLAAYAVHGKIFGVSSADTDCHAYGAP-FAIPEID 226
Query: 198 PSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI-----------RGIGGQT 246
K+ ++ E + LE+L LT +QF+DLCIL GCDY D RGIG +T
Sbjct: 227 VVGEKLTLVHRE--QYLEDLGLTKEQFLDLCILCGCDYNDRASFEAKTAGKRPRGIGCKT 284
Query: 247 ALKLIRQHGSIETI--LENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPD 304
ALKLI++HGSIE I LE IN Y+ R LF+ P+ + D + S P
Sbjct: 285 ALKLIKEHGSIEKIGELEGINIAPLN------YERCRELFRIPDKIED----IVPGSRPQ 334
Query: 305 EEGLINFLVSEN-GFNSDRVTKAIEKIKA 332
++ L FL N F+SD V + +K
Sbjct: 335 KDSLELFLQENNVHFDSDYVLECWGPVKV 363
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 181/412 (43%), Gaps = 52/412 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL LL + ES G+ +A+D SM ++Q + + + + N
Sbjct: 1 MGVHGLWHLLQSTG----RPVTLESLEGKVLAVDVSMWMHQLMKGMRDSHGNPVPN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL G++ R +LL +KP++VFDG P LKKQ D DL + +E N
Sbjct: 53 --AHLIGLYHRICKLLYYRIKPVFVFDGGVPALKKQT--------TDELIDLQKVLEVEN 102
Query: 121 KE---DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
E + + +T+Q N + + L++L G+P V +P EAEAQCA L + Q
Sbjct: 103 TELHNTRNQQDRMATSLTEQMNIEAQELVRLFGLPYVVSPMEAEAQCAFLDLTSQTNGTV 162
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
++D D FG ++L + S R + FE ++L LT ++ +++ ++ G DY
Sbjct: 163 TDDSDIWLFGGRNVYKNLFN-SKRHVEWFRFE--DFEKQLFLTREKLVNMALVCGSDYTP 219
Query: 238 SIRGIG--------------GQTALKLIRQHGS-------IETILENINRERYQIPEDWP 276
I G G +L+L +Q ++ I + I E +P
Sbjct: 220 GIHNAGPVAAMEIMGEFPAPGLRSLQLFKQWWDEAQTKVKVQETKVKIKLRKLVINEGFP 279
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN- 335
+ + P V DE + W PD + L + + G+N +++ +++ + N
Sbjct: 280 SEAVVDAYMNPTV--DESREDFSWGRPDLDLLRQYAKNRFGWNKEKIDESLLPVMKQINA 337
Query: 336 -KSSQGRLESFFKPVANTSAPIKRKEPE---NTPKATTNKKSKAGGGGGRKR 383
+ SQ R+ FF S +K + N +++ NKK + G+ +
Sbjct: 338 KQDSQLRMTQFFPSEMTESRKLKSQRVRRVINVIRSSPNKKLRVAPPAGKSK 389
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 135/263 (51%), Gaps = 27/263 (10%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
K E+ +K+AID+S+ +YQF + LTN +H+ G R +LL G+K
Sbjct: 14 KLETMGNKKLAIDSSIWLYQFQNAMRDREGRGLTN------AHILGFLRRISKLLYYGIK 67
Query: 82 PIYVFDGQPPDLKKQELAKR-YSKRADATDDLAEAVEAGNKEDIEKFSKRTVK------- 133
P++VFDG P LKKQ + + Y DD+ V+A ++ K + VK
Sbjct: 68 PVFVFDGGAPVLKKQTIVEHLYFSSIFKLDDMRHQVDA----EVNKLKDQRVKDRRDADD 123
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
V Q + D + +L+L G+P V +P EAEAQCA L K G V + ++D D FG R +
Sbjct: 124 VNLQMSKDIQSMLRLFGIPYVISPMEAEAQCAELLKKGLVDGIITDDSDVFLFGGTRVYK 183
Query: 194 HLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
++ + + +E + LE EL L+ + I L L G DY + + G+G TA++++
Sbjct: 184 NMFNQNK----FVECYLMNDLEKELGLSRQRLIQLAYLLGSDYTEGLAGVGPVTAMEILS 239
Query: 253 ----QHGSIETILENINRERYQI 271
+H ++ + IN +R+ +
Sbjct: 240 EFDDEHLTVAGLDSLINFKRWWM 262
>gi|326433198|gb|EGD78768.1| exonuclease 1 [Salpingoeca sp. ATCC 50818]
Length = 686
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 147/301 (48%), Gaps = 19/301 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL +LL + +E ++Y G+K+A+D+ +++ G G +
Sbjct: 1 MGIQGLLQLLQ----PATQEMHIKAYAGKKVAVDSYCWLHR-----GAYGCAADLAMGKK 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
H+Q R L G+ P+ V DG+ K +E +R R + + + AG+
Sbjct: 52 TDLHIQYCMKRLAMLQHYGVTPVVVLDGRNLPSKGEEEKQRRESRRNHLKQGTDLLRAGH 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + +R + +T + R + G+ V AP EA+AQ A L S V+AV +ED
Sbjct: 112 RSKALEHFQRAIDITPEIGHALVRACRAAGIECVVAPYEADAQLAFLATSKYVHAVITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNL---TMDQFIDLCILSGCDY 235
D L +G PR L + + + + M+ F+ A+I +N T QF +CIL+GCDY
Sbjct: 172 SDLLVYGCPRVLFKMDEYGTGQEIRMQRLFQGAQISTTINFMSWTQRQFRKMCILAGCDY 231
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
S G+G +TA K+ + H +I+ I++ I ++P D+ +F+ E+ D +
Sbjct: 232 LPSPTGLGVKTAFKIAKIHDNIDKIVQVIASRGIRVPADYA-----EMFRRAELTFDHQP 286
Query: 296 L 296
+
Sbjct: 287 V 287
>gi|52548675|gb|AAU82524.1| DNA repair protein [uncultured archaeon GZfos18C8]
Length = 190
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Query: 157 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV------MEFEV 210
PSE EAQ A + +SG V V S+D DSL FGAP +R+L RK+P ++ E+
Sbjct: 1 PSEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKKVYVDVKLEI 60
Query: 211 AKI---LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
++ L+ L +T +Q ID+ IL G DY I GIG + AL+LI +HGSIE L +
Sbjct: 61 IELQPNLDRLGITEEQLIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALSILGES 120
Query: 268 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
+ E + F +P+V D + W PDE + L E+GF+ RV KA+
Sbjct: 121 IEDL------DEIKNFFLDPDVTDD---YSLTWKKPDEPKITELLCHEHGFSEVRVAKAV 171
Query: 328 EKIKAAKNKSSQGRLESF 345
E++ A + Q L+ +
Sbjct: 172 ERLVRASDSMGQSTLDMW 189
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 133/252 (52%), Gaps = 18/252 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL KLLA + E+ +AID S+ + QF+ M +E
Sbjct: 1 MGVQGLWKLLAPCG----RRISVETLEHTTLAIDVSIWLTQFV-------KAMRDDEGRP 49
Query: 61 V-TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ +HL G R +LL G++P++VFDG P +K + + +R +R DD EA A
Sbjct: 50 IRNAHLIGTLRRVAKLLYHGVRPVFVFDGGVPVVKARLIRQRQMRREKNRDD-REA--AS 106
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ ++ + S+ VT+ +D LL+L+GVP V AP EAEAQCAAL +G V ++
Sbjct: 107 LRREMSRSSRDADSVTEDMREDTMHLLRLLGVPYVVAPMEAEAQCAALEAAGLCEGVVTD 166
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D+ FGA R +++ D RK V + + +L L D+F L +L G DY + +
Sbjct: 167 DSDAFCFGARRVYKNIFD--DRKY-VEAYYASDCARDLRLGRDEFCALALLLGGDYDNGV 223
Query: 240 RGIGGQTALKLI 251
G+G A++++
Sbjct: 224 AGVGVVNAMEVL 235
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 16/280 (5%)
Query: 35 ASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK 94
AS+ ++QFL + +L +H+ G F R +LL G+ P++VFDG P LK
Sbjct: 6 ASIWLHQFLKAMRSRDGNLLHG------AHIIGFFRRICKLLFYGILPVFVFDGATPALK 59
Query: 95 KQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC-KRLLKLMGVPV 153
+Q +A R +RA L + E ++ KR + V Q C LL + G+P
Sbjct: 60 RQTIASRRHRRATVEQSLRKTAERILSLQLQ---KRALIVNWQQRKSCVPLLLFIFGIPY 116
Query: 154 VEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 213
+ A +EAE+QCA L K G V + ++D D FG ++ M +R + + + + ++
Sbjct: 117 IVATTEAESQCAFLQKQGLVEGIVTDDSDVFVFGGEVVYKN-MFTQTRSVEI--YTMDRL 173
Query: 214 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN-RERYQIP 272
E+L L+ ++ I L L G DY + GIG T+++++ + +++ N ++ IP
Sbjct: 174 QEQLGLSREKLILLAYLLGSDYTPGLVGIGPVTSVEILNEWCNLDYSKGGRNLAKKLDIP 233
Query: 273 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
+ +P + P V D++ W PD EG+ +FL
Sbjct: 234 DGFPDLRVLNAYINP--VVDQDLTNFTWGEPDLEGIRHFL 271
>gi|164662529|ref|XP_001732386.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
gi|159106289|gb|EDP45172.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
Length = 150
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 27/136 (19%)
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
MD+LTFGAP L++L +K+PV E + K LEEL++ M+QF+DLC+L GCDY D +R
Sbjct: 1 MDTLTFGAPILLKNLTASEQKKLPVTEVHLGKALEELDMPMEQFVDLCMLLGCDYLDPVR 60
Query: 241 GIGGQTALKLIRQHGSIETILENINRER---------------------------YQIPE 273
G+G + ALKLI+ H ++E ILE++ + Q+P+
Sbjct: 61 GVGPKKALKLIQDHRTLERILEHLKQADDAKKAKASDAHGSDDDEATSIKKRPGGIQVPD 120
Query: 274 DWPYQEARRLFKEPEV 289
WP+QEAR LF PEV
Sbjct: 121 FWPFQEARELFLTPEV 136
>gi|384498961|gb|EIE89452.1| hypothetical protein RO3G_14163 [Rhizopus delemar RA 99-880]
Length = 118
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Query: 123 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 182
++ K+SKRT+K+T++H ++CKRLL MG+P +EAPSEAEAQCA L K G+V+A ASEDMD
Sbjct: 15 EVTKYSKRTIKITREHTEECKRLLTAMGIPYLEAPSEAEAQCAELAKEGKVFAAASEDMD 74
Query: 183 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ 223
+L F P LRHL SR + E + K+L L L M Q
Sbjct: 75 TLVFKTPILLRHLTFSGSR---IHEIHLDKLLNGLGLDMIQ 112
>gi|47227957|emb|CAF97586.1| unnamed protein product [Tetraodon nigroviridis]
Length = 176
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP++AEA CA L K G V AVASEDMD+L FGA +R S + V+E+ + K+LE
Sbjct: 1 APADAEALCAWLVKEGTVDAVASEDMDTLPFGANILIRQF--KSKKDGEVIEYSLTKLLE 58
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
L + +F+DLCIL GCDYC+ I G+G + AL+LI++H +IE +L +INR+
Sbjct: 59 RLQINHQEFVDLCILLGCDYCEKICGLGPRRALRLIQKHRTIENVLLHINRK 110
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 138/288 (47%), Gaps = 34/288 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P S ++ FE G+ +AID S I ++ +T+ + +
Sbjct: 1 MGVKDLWNILS---PLSERKPMFELQ-GKTVAIDMSCWI---------VDSQTVTDHSAQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ ++ RT LL G+ P++V +G+ P LK + +AKR R+ + + G
Sbjct: 48 PKMYLRNLYFRTAFLLMQGISPVFVLEGKAPTLKHKTIAKRNDVRSGFRE--KKTASKGG 105
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + ++CK +L+LMG+ V+ EAEA CA L + G V S+D
Sbjct: 106 RTQFNRIL-----------NECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQD 154
Query: 181 MDSLTFGAPRFLRHLMDPS-----SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
D +GA R+ + S V E+++ KI L L ++ I L +L GCDY
Sbjct: 155 SDCFLYGAKTVYRNFCTSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDY 214
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 283
D + G+G + A+KL + E ILE + R D Y+EA L
Sbjct: 215 NDGLNGVGKEAAMKLFKIVND-EDILERMKSWRTDTTLD--YKEAELL 259
>gi|429963370|gb|ELA42914.1| hypothetical protein VICG_00229 [Vittaforma corneae ATCC 50505]
Length = 358
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 41/312 (13%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +L K +K+ Y R++ ID I++ ++ ++ N +
Sbjct: 1 MGIKGLLPILR----KILKKTHIGKYSNRRVGIDGHSWIHR---IIPYIAADLYCNNPTQ 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
HL + LL+ G+ PI+VFDG + KK+ + +R R ++ ++ +
Sbjct: 54 --KHLDLFMAKLSGLLDYGITPIFVFDGDFLESKKKTIQERKQLREKYRAEVDFFLQRND 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ KR V VT + R+LK + + +P EA+AQ L + + + +ED
Sbjct: 112 VPRARELMKRCVSVTPEILHSILRVLKANNIEFIVSPYEADAQLYFLQRIKYIDYILTED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDY 235
D + +GA R L + V E++ A+ L+L D++ +D+CILSGCDY
Sbjct: 172 SDLVVYGATRILY-----KYDGVHVEEYDSAR----LHLCKDKYFQENILDICILSGCDY 222
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW------------------PY 277
DSIRGIG TA + +++ G +++ + ++ + +P+++ PY
Sbjct: 223 LDSIRGIGIVTAYEKLKELGDVDSFVNSMISLKKNVPKEYISDFVKAKATFLHHIVYNPY 282
Query: 278 QEARRLFKEPEV 289
R+ EP++
Sbjct: 283 TMQRQFLSEPKI 294
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 54/311 (17%)
Query: 1 MGIKGLTKLL---ADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNE 57
MG+K L +L D P E G+ IA+D S I + + V
Sbjct: 1 MGVKTLWVVLEPVKDPTP-------LEDLKGQTIAVDLSSWICESIAAVN---------- 43
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
HL+ +F R + L ++P++V DG PP+LK EL KR + D+ + E
Sbjct: 44 --AFKPHLRNLFYRVVNLSRLNIQPVFVIDGDPPELKSNELVKRAHIQGDSKNKHGE--- 98
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
K +++ +T++ +C +LL ++GVP ++A EAEA CA L K G V V
Sbjct: 99 --KKPGMQRTRLKTLQY------ECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVF 150
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC- 236
+ED D+ +GA + ++L S V +++ I E+L L ++ I + +L GCDY
Sbjct: 151 TEDGDAFLYGAKKVYKNLT-AGSNGSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLS 209
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 296
D + +G A +L+ G I+ + ER+ +W ++++ D++
Sbjct: 210 DGVPSVGKTNATQLMHSLGDIDVL------ERFH---EWTQEKSQ----------DDDPN 250
Query: 297 QIKWSAPDEEG 307
QI S D++G
Sbjct: 251 QIVTSDEDDDG 261
>gi|298708646|emb|CBJ26133.1| exonuclease, putative; 92014-93872 [Ectocarpus siliculosus]
Length = 587
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 139/300 (46%), Gaps = 15/300 (5%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL L P + E Y G K +DA +++ G E+ T A
Sbjct: 1 MGITGLLPFLKSVTYPTHISE-----YRGLKAGVDAYCWLHRGAF---SCGMELCTGVAT 52
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ ++ R LL G++P+ VFDG +K+ +R +R A A+ AG
Sbjct: 53 D--KYVAFCMKRVNLLLHHGIQPVMVFDGASLPIKRSINLERRRQRETARSKGEAALAAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + V VT + L+ GV +V AP EA+AQ A L ++G V V SE
Sbjct: 111 EAGAAAQHFSKAVGVTHDMAFLLMKALRQAGVELVVAPYEADAQLAFLSRTGAVDVVLSE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
D D L +G + L + + ++I + L N F+DLC+L GCDY
Sbjct: 171 DSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYIPS 230
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDEEQ 295
S++G+G TA KL+ +H S++ I+ IN R+ IPE + Y+ AR F+ + E +
Sbjct: 231 SVKGLGIATAYKLVDRHRSLDKIIGAINSSRFVIPEGYWEQYKRARLTFRHHIIYNPETE 290
>gi|392561830|gb|EIW55011.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 320
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 130/291 (44%), Gaps = 19/291 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL D +K + G+ +A+D + +++ G G
Sbjct: 1 MGISGLLPLLKD----IQTNKKLSEFRGQTLAVDGYVWLHR-----GSYGCAPELTTGKP 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T +++ R L G+ P VFDG P K+ A+R +R + G
Sbjct: 52 TTKYVEYAMHRVRLLRHHGITPYLVFDGGPLPAKQGTEAERKQRRDENLARANALAAQGK 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ + V VT Q + L+ GVP V AP EA+AQ A L + G V + +ED
Sbjct: 112 HSQAREYYVKCVDVTPQMAYQLIKALRAEGVPYVVAPYEADAQLAYLERIGAVDGIITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-------LEELNLTMDQFIDLCILSGC 233
D L FG L L +S + + A I L + + QF + ILSGC
Sbjct: 172 SDLLVFGCKNVLFKLDHAASTVTCIARKDFAAIASTAAGGLSLVGWSDAQFRTMAILSGC 231
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 283
DY SI GIG +TA L+R+H ++E L + E + +IP+ Y +A RL
Sbjct: 232 DYLPSIPGIGLKTAWTLLRKHKTVENTLSALRLEGKKKIPQG--YLDAFRL 280
>gi|145341014|ref|XP_001415611.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575834|gb|ABO93903.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 330
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 122/272 (44%), Gaps = 6/272 (2%)
Query: 5 GLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSH 64
G+ LL S E+Y G+ + +DA + +++ R E L H
Sbjct: 2 GIASLLPTLKSISRHAHVGETYAGQVVCVDAYVWLHRGAYACSRELCEGLPTR-----KH 56
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI 124
++ R L A ++ IYVFDG K E A+R R++A GN
Sbjct: 57 VEYFLNRARTLKRANVRAIYVFDGGRLPGKANEEAQRRRNRSEALAKAKAHARQGNASAA 116
Query: 125 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 184
F R V +T + + L G + AP EA+AQ A L K+G V V +ED D +
Sbjct: 117 NDFYVRAVDITPEMAREVIEALAREGFESLTAPYEADAQMAYLVKNGFVAGVITEDSDLI 176
Query: 185 TFGA-PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIG 243
G F + D S +I E + L + T D F+++C+LSGCDY S+ G+G
Sbjct: 177 AHGCRSVFTKMAGDGSGIEIRFEELGRNRGLSFVGFTPDMFLEMCVLSGCDYLPSLNGVG 236
Query: 244 GQTALKLIRQHGSIETILENINRERYQIPEDW 275
+ A LIR+ + +L ++ E +P+D+
Sbjct: 237 VKKAHSLIRRFKTYNKVLRHMKFEGIAVPKDY 268
>gi|209878504|ref|XP_002140693.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209556299|gb|EEA06344.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 496
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 140/274 (51%), Gaps = 28/274 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFL------IVVGRTGTEML 54
MGI+GL N K + +K + + G+++AID +++ +V+GR+ T M
Sbjct: 1 MGIQGLLP----NIDKVSRIKKIDEFKGKRVAIDTYGWLHRSAANCAEDLVLGRS-TRM- 54
Query: 55 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 114
H+Q R L G+ P+ +FDG P +K+ +R+ KR +A +L +
Sbjct: 55 ---------HIQYCIDRVNLLKSKGIIPVCIFDGAPLPMKRVTEEERHMKRLEAKKELLQ 105
Query: 115 ---AVEAGNKEDIEKFSKRTVKVTKQ-HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 170
+ + N +I +R + +T + + L G+ + AP EA+AQ + LC++
Sbjct: 106 LEKSRKCSNSYEIRNLCQRALDITPDIAHQVIEELRDHHGIECIVAPYEADAQLSYLCRT 165
Query: 171 GQVYAVASEDMDSLTFGAPRFLRHLMDPS--SRKIPVMEFEVAKILEELNLTMDQFIDLC 228
G V AV +ED D L FG+P + D + R I + + IL + T + F+ C
Sbjct: 166 GYVDAVITEDSDMLVFGSPCTIYKHDDKTGICRVIYWGDLPRSGILRQNIFTYEMFVLGC 225
Query: 229 ILSGCDYCDSIRGIGGQTALKLIRQ-HGSIETIL 261
L+GCDY S +G+G +TA+KL+++ +G +E I+
Sbjct: 226 TLTGCDYVKSPQGVGIKTAMKLVQEYYGDLERII 259
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P S ++ FE G+ +AID S I ++ +T+ + +
Sbjct: 1 MGVKDLWNILS---PLSERKPMFELQ-GKTVAIDMSCWI---------VDSQTVTDHSAQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ ++ RT LL G+ P++V +G+ P LK + +AKR R+ + + G
Sbjct: 48 PKMYLRNLYFRTAFLLMQGISPVFVLEGKAPTLKHKTIAKRNDVRSGFRE--KKTASKGG 105
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + ++CK +L+LMG+ V+ EAEA CA L + G V S+D
Sbjct: 106 RTQFNRIL-----------NECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQD 154
Query: 181 MDSLTFGAPRFLRHLMDPS-----SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
D +GA R+ + S V E+++ KI L L ++ I L +L GCDY
Sbjct: 155 SDCFLYGAKVVYRNFCTSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDY 214
Query: 236 CDSIRGIGGQTALKLIR 252
D + G+G + A+KL +
Sbjct: 215 NDGLNGVGKEAAMKLFK 231
>gi|402222231|gb|EJU02298.1| PIN domain-like protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 342
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 125/269 (46%), Gaps = 12/269 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL LL D ++ GR AID Y +L E L GE
Sbjct: 1 MGIKGLLPLLGD----IREDIHVSEVAGRTYAIDG----YSWLHKGAWGCAEQLAK--GE 50
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T F IRLL ++P VFDG P KK +R RA+A E + G
Sbjct: 51 KTVKYVDYFMGRIRLLRYHNIEPFVVFDGGPLPAKKGTEEERSKSRAEALAQARELLAKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ +F + + +T +H + LK V V AP EA+AQ A L +G V+ + +E
Sbjct: 111 KASEAREFYVKALDITPEHAFQVIKALKSEDVQYVVAPYEADAQMAYLENAGHVHGIITE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FG L L D +++ K + +F + +LSGCDY S
Sbjct: 171 DSDLLVFGCKDVLFKLDTDGQCKRVRRSRLTKCKEASFVGWGDKEFRWMAMLSGCDYLPS 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE 267
I+G+G +TA +L+RQ +++ +L+++ RE
Sbjct: 231 IQGMGLKTAHRLLRQWKTVDRVLQHVRRE 259
>gi|284504378|ref|YP_003407093.1| flap-specific endonuclease [Marseillevirus]
gi|282935816|gb|ADB04131.1| flap-specific endonuclease [Marseillevirus]
Length = 362
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 164/380 (43%), Gaps = 84/380 (22%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+ L KLL + +P + ++ G+K+ IDA +++FL G G
Sbjct: 1 MGIQDLNKLLKEESPDCFSKHPISTFSGKKVGIDAFQWMFRFLRASGDEGV--------- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDG-QPPDL-----------------KKQELAKRY 102
L + L + G+ VFDG + P+ KKQ L + +
Sbjct: 52 ----LPSFLSHICALRKNGVLVFCVFDGSECPEEKEEERKDRKKKRDELVEKKQNLERIF 107
Query: 103 SKRADATDDLAEAVEAGNK------------------------EDIEKFSKRTVKVTKQH 138
D D + + V+ + E + ++K++ +T +
Sbjct: 108 EDFDDDCDVVPKEVQEDARKWLHKKKYAGVDLSDPSIFSRTVLESLSTYAKQSTPLTNER 167
Query: 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 198
+ K LL ++GV V A EA+ ++ G+++A S D D +G P F +D
Sbjct: 168 VESVKNLLDILGVRYVSAKGEADGVLSSYVIKGKLFAACSADTDVHAYGVP-FAIPDVDT 226
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-----------SIRGIGGQTA 247
SS ++ E + LE+L LT +QF+DLCI+ GCDY D RGIG +TA
Sbjct: 227 SSETFTLVHRE--QYLEDLGLTEEQFLDLCIMCGCDYNDRASQEAKTAGKKARGIGWKTA 284
Query: 248 LKLIRQHGSIETILENINRERYQIPEDWP--YQEARRLFKEPEVVTDEEQLQIKWSAPDE 305
L LIR++GS+E I E+ + P Y+ R L K E V DE K P+
Sbjct: 285 LSLIRKYGSLEEI------EKIPGVDVGPLNYKRCRELLKVQEQV-DEIPPGGK---PNR 334
Query: 306 EGLINFLVSENG--FNSDRV 323
E L NF ENG F+ D V
Sbjct: 335 EDLENFF-QENGARFDVDYV 353
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 42/295 (14%)
Query: 86 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 145
DG PPD + R S+ DA D ++ +K K +++ ++ N+D K L
Sbjct: 1085 LDGPPPDDRPH---LRDSRALDAYLDRTNRENEHLMKEYKKLKKNNIEINEEMNEDIKIL 1141
Query: 146 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 205
L + G+P V++P EAEAQC+ L A+ S+D D L F +++ + RK V
Sbjct: 1142 LNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFFN---RKKTV 1198
Query: 206 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET------ 259
+E I ++L L D+ I+L +L GCDY + G+G AL++I+ + E
Sbjct: 1199 EVYERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKKLKE 1258
Query: 260 ILENINRERYQ-------------------------IPEDWPYQEARRLFKEPEVVTDEE 294
I+ N R+ Q P ++P +E R FK P+V TD +
Sbjct: 1259 IVSNPFRDLSQDDKYFHNEEVKRFLQTHKNYKLNWIFPNNFPDREVYRCFKYPKVCTDIQ 1318
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI---KAAKNKSSQGRLESFF 346
+ Q W P+ + FL ++++ + I + +S Q +++ FF
Sbjct: 1319 KFQ--WHLPNLSHITKFLNKATNIAEEKISNVLNPILQKYDVRVRSYQLKIDDFF 1371
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 30/141 (21%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFL----IVVGRTG------ 50
MG+KGL ++A P ++ E + G++IAID S+ +Y+ + V R G
Sbjct: 1 MGVKGLWSIVA---PVGVRVNP-EIFTGKRIAIDVSIWLYELTYANNLKVLRNGAVDNMS 56
Query: 51 --------------TEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
T+M T+ +V HL F R +LL ++PI++FDG PP+LK++
Sbjct: 57 IFNDLWMDFSEQMNTDMRTDNLKKV--HLYFFFLRICKLLYYNIRPIFIFDGTPPELKRK 114
Query: 97 ELAKRYSKRADATDDLAEAVE 117
+ +R KR + + + E
Sbjct: 115 TIFQRNVKRRNHEEKFKKTAE 135
>gi|440491647|gb|ELQ74269.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 441
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 20/295 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++ +K++ S+ +I ID ++ L + L N
Sbjct: 1 MGIKGLLPIVS----PCLKKRHISSFKNHRIGIDGHSWLHSILPSIALQ----LYNNVQT 52
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H +F + +R+++ G P+ VFDG+ K +R KR +A + G
Sbjct: 53 TLHH--EIFLKRVRVIQKYGAVPVVVFDGESLPSKHVVNERRRMKREEARTMAELQMSKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N + ++ ++ ++ + L+ GV V+ +P E++AQ A L + V+++ +E
Sbjct: 111 NVREAMRYIACSISISPHMVAQIAQFLRDNGVEVIVSPYESDAQLAYLQRINYVHSIITE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D D + + L + VM +E D +D+ ILSGCDY +++
Sbjct: 171 DSDLIVYKCNNVLYKYGNGY-----VMHYERGAFRTANEFVCDNLLDVSILSGCDYLENV 225
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTD 292
RG+G +A+K++R++GS+E ++ + R R +PED+ + AR FK +VV D
Sbjct: 226 RGVGISSAVKMMRRYGSVELVINEMRRTR-SVPEDYLSCFVRARLTFKY-QVVYD 278
>gi|396082436|gb|AFN84045.1| exonuclease 1 [Encephalitozoon romaleae SJ-2008]
Length = 366
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 168/362 (46%), Gaps = 43/362 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL ++A K + SY ++I ID +YQ L V EM
Sbjct: 1 MGISGLLPIVATKLVK----RHISSYRHQRIGIDGHAWLYQILSFVAE---EMFFKVP-- 51
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H+ MF +++LE+ G+ PI V DG K++ KRY K+ + +
Sbjct: 52 TRKHIT-MFEEKVKVLESYGITPIIVLDGDTLSSKEETNRKRYIKKDKNRKEAEHWLVKN 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E + F ++ + VTK+ D R+L+ + V + +P E++AQ L + G + + +E
Sbjct: 111 DPEKAKGFMRQCIAVTKEIVSDIARMLERINVEYIISPYESDAQLCYLERIGYIDCILTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ-FIDLCILSGCDYCDS 238
D D + +G+ R L + V EF + E ++ +D+ ILSGCDY S
Sbjct: 171 DSDLIPYGSNRILYKFDNTF-----VQEFTRGCLSEARGRDFEENILDISILSGCDYLAS 225
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW------------------PYQEA 280
I+G+G TA KL+ + ++E ++E + + R IP+++ P Q+
Sbjct: 226 IQGVGVVTAHKLLSKEKTVEKVVEYL-QHRKAIPDNYLDDFFKAKKTFLHQIVYDPIQQK 284
Query: 281 RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK--IKAAKNKSS 338
RR ++ +E+L + +EE I E F S R T+AI++ I A+ + S
Sbjct: 285 RRYLRDV-----KEKLDFLGTLKEEEYRIEDGPLELFFKSSRRTRAIKRHFIPVARKRRS 339
Query: 339 QG 340
+
Sbjct: 340 EA 341
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 40/229 (17%)
Query: 132 VKVT--KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 189
+K+T K + DD + LL+L GVP + APSEAE+QCA + K G YAV S+D D+L FGA
Sbjct: 469 IKLTQNKMYYDDTQALLELFGVPYLIAPSEAESQCAYMNKKGDCYAVISDDSDALVFGAR 528
Query: 190 RFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTAL 248
L++ + + V E A +I +EL + Q + ++ GCDY + +RGIG AL
Sbjct: 529 CLLKNFYNDN-----VFELYTAERIRKELGIGRKQLALIAVICGCDYTNGVRGIGVVNAL 583
Query: 249 KLIRQHGSIETILE----------------------------NIN-RERYQIPEDWPYQE 279
++I+ + E + E +IN R + D+P +E
Sbjct: 584 EVIKAYPKFEDLHEFKHWATSDCSVESATSDECQLRSEYKKAHINYRVHWTFSSDFPNRE 643
Query: 280 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
A LF P TDE L W PD + L+ F++ + ++V + ++
Sbjct: 644 AYDLFLRP-TTTDEYHL--SWKKPDFKPLLEFMLKRSSLPQEQVKQCLD 689
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L LL A + ES FG+ IDAS I + +E + G+
Sbjct: 1 MGVHKLWDLLTATALPV----RVESLFGKVCCIDASFWIIHCM------ASESINRHGGD 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 101
V + F R LL+ G++P++VFDG+ P K + + KR
Sbjct: 51 V---IAVFFLRICYLLDKGIRPVFVFDGKSPFAKIKTIIKR 88
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 40/250 (16%)
Query: 140 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPS 199
D LL L GVP + APSEAEAQCA L +G + V S+D D+L FGA R ++ +
Sbjct: 687 DKVPALLDLFGVPFIVAPSEAEAQCAHLNNTGLCFGVISDDSDTLAFGAKRVFKNFYSGN 746
Query: 200 SRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 258
V E VA +IL EL L ++ L IL GCDY +RGIG AL++I+ + +
Sbjct: 747 -----VFEVYVADRILHELGLGRNEIALLAILCGCDYTPGVRGIGVVNALEVIKAFPTFD 801
Query: 259 TILE----------------------------NIN-RERYQIPEDWPYQEARRLFKEPEV 289
+ E ++N R + D+P +EA L P V
Sbjct: 802 DLYEFRRWATSDCDITTVTQDTCPLKQAYKESHVNYRMHWSFGSDFPNREAYNLLLSPVV 861
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 349
+ + KW PD +G++ F+ + + +T + K++ + G + F P
Sbjct: 862 SS---TFKPKWRTPDYDGIMRFMSKHSALPASEMTTCMSKLRGGDD--FDGYILEDFVPE 916
Query: 350 ANTSAPIKRK 359
++ + +K K
Sbjct: 917 IHSRSHVKGK 926
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +A S + E G+K+AIDAS I L +E +
Sbjct: 1 MGIKGLWDAVAAAGVSS----RVELLRGKKVAIDASFWISHCL------ASEAALRRGND 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 112
+ F R LLE + PI+VFDG+ P K++ L R RA T +L
Sbjct: 51 IYGVF---FLRICYLLEKRIYPIFVFDGRTPGAKRRTLLMRNMSRARRTRNL 99
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 126/276 (45%), Gaps = 42/276 (15%)
Query: 108 ATDDLAEAVEAGNKE---DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQC 164
A DD E N+E + K K +++ ++ N+D K LL + G+P V++P EAEAQC
Sbjct: 1070 ALDDYMEKANKENEELVKEYRKLKKNNIEINEEMNEDIKILLNMFGIPYVQSPCEAEAQC 1129
Query: 165 AALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF 224
+ L A+ S+D D L F +++ ++K V +E I ++L L D+
Sbjct: 1130 SYLNCKNYCDAIISDDSDVLVFNGKTVIKNFF---NKKKTVEVYERKLIEDKLGLYQDEL 1186
Query: 225 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET------ILEN-----------INRE 267
I+L +L GCDY + G+G AL++I+ + E I+ N N E
Sbjct: 1187 INLSLLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKKLKEIVSNPFRDLSKDDKYFNNE 1246
Query: 268 RYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
Q P+++P +E + FK P+V TD E+ Q W P+ + FL
Sbjct: 1247 EVQRFLKTHKNYKLNWIFPKNFPDREVYKCFKYPKVCTDIEKFQ--WHLPNLTHISRFLQ 1304
Query: 314 SENGFNSDRVTKAIEKI---KAAKNKSSQGRLESFF 346
E +++ + I K +S Q ++ FF
Sbjct: 1305 KETNIAEEKIYNVLNPILQKYDVKVRSYQLKIHDFF 1340
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 30/129 (23%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIV----VGRTG------ 50
MG+KGL ++A P ++ E + G++IAID S+ +Y+ V R G
Sbjct: 1 MGVKGLWSIVA---PVGVRVNP-EIFTGKRIAIDVSIWLYELTYANNMKVLRNGGVDNMS 56
Query: 51 --------------TEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 96
T+M T +V HL F R +LL ++PI++FDG PP+LK++
Sbjct: 57 MFNDLWMDFSENMNTDMRTENLRKV--HLYFFFLRICKLLYYNIRPIFIFDGTPPELKRK 114
Query: 97 ELAKRYSKR 105
+ +R KR
Sbjct: 115 TIFQRNMKR 123
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 41/259 (15%)
Query: 126 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
K + + ++ N+D K LL G+P ++AP EAEAQC+ L + A+ S+D D +
Sbjct: 927 KLKNNNITINEEMNEDIKLLLDFFGIPYIQAPCEAEAQCSYLNNNNYCDAIISDDSDVIV 986
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
F +++ ++K V +E I +L L D I++ +L GCDY + G+G
Sbjct: 987 FSGKTIIKNFF---NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGVGIV 1043
Query: 246 TALKLIRQHGSIET------ILENINRERYQ--------------------------IPE 273
AL++++ + + I+ N R+ YQ P+
Sbjct: 1044 NALEIVKAFPTFDDLKILKEIVSNPLRDIYQENDENNYSDEIKKFLNTHRNYKLNWIFPK 1103
Query: 274 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI--- 330
++P +E + FK P+V D + +I+W AP+ +I++L + D++ ++ I
Sbjct: 1104 NFPDKEVYKCFKYPKVCKDIK--KIEWHAPNMNKIIHYLNKTTNISEDKIFNVLDPILKK 1161
Query: 331 KAAKNKSSQGRLESFFKPV 349
K +S Q R+E FF PV
Sbjct: 1162 YNVKTRSYQLRIEDFF-PV 1179
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL ++A P ++ E + G++IAID S+ +Y+ ++ G N +
Sbjct: 1 MGVKGLWSIVA---PIGVRVNP-EIFTGKRIAIDVSIWLYE--LIYGNNLKSSRNNNLDD 54
Query: 61 V-----------------------TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE 97
+ H+ F R +LL ++PI++FDG PP+LKK+
Sbjct: 55 LGMFNDLWLDFSENNSDLKLSNLKKGHIYFFFLRICKLLYYNIRPIFIFDGIPPELKKRT 114
Query: 98 LAKRYSKRADATDDLAEAVE 117
+ +R KR + + + + E
Sbjct: 115 IFQRNLKRKNNEEKVKKTAE 134
>gi|308799503|ref|XP_003074532.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
gi|116000703|emb|CAL50383.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
Length = 1004
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 13/278 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKF--ESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA 58
MGI L L KS++ ++Y G K+ +DA + +++ R E +
Sbjct: 1 MGISALLPAL-----KSIERAAHVGDAYGGAKVCVDAYVWLHRGAYACSRELCEGV---- 51
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T H++ R L +G++ ++VFDG K E A+R R +A D
Sbjct: 52 -KTTKHVEYFVNRARGLRRSGVEAVFVFDGGRLPGKAAEEAQRRRNRREALDKAKTHARN 110
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN + R V VT + + L+ G + AP EA+AQ A L K G V AV +
Sbjct: 111 GNASAANECYVRAVDVTPEMAREVIEALEREGFECLTAPYEADAQMAYLVKHGFVSAVIT 170
Query: 179 EDMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
ED D + G F + D S +I E + + + T F+++C+LSGCDY
Sbjct: 171 EDSDLIAHGCKSVFTKMSPDGSGIEIRFEELGKNRGMSFVGFTPQMFLEMCVLSGCDYLP 230
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
S+ G+G + A LIR+ + +L ++ E +P+D+
Sbjct: 231 SLAGVGLKKAHSLIRRFKTYNKVLRHMKFEGISVPKDY 268
>gi|156355443|ref|XP_001623677.1| predicted protein [Nematostella vectensis]
gi|156210399|gb|EDO31577.1| predicted protein [Nematostella vectensis]
Length = 306
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 21/285 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL +S+ +F+ G+ + +DA +++ G G M E +
Sbjct: 1 MGIQGLLPLLKP-IHRSVNISEFK---GQTVGVDAYCWLHK-----GAYGCAMDLVEGKK 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDG-QPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T ++ + R +L +KP+ VFDG P +E +R S+ + + LA + AG
Sbjct: 52 TTVYINYVLKRINMMLFHDVKPVLVFDGAYLPSKANKEAERRKSRNENKANGLA-FLRAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N+ ++ ++ V ++ + ++ + GV + AP EA+AQ A L K + AV SE
Sbjct: 111 NRAKAQECFQKCVDISPDMALEVIKMCRSKGVDCIVAPYEADAQLAYLMKKNIIQAVISE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGCDYCD 237
D D L +G + + MD S V ++++ L+ T+++F +CILSGCDY
Sbjct: 171 DSDLLVYGCKKVMFK-MDASGYGTLVSLDHLSELTNLKMHEFTLEKFRHMCILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIE------TILENINR-ERYQIPEDW 275
SI+GIG A KL+R +I T++ N+ ++Y++P D+
Sbjct: 230 SIKGIGLIKANKLLRNSSNINKACINLTLVRNLRMDDQYRVPVDY 274
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 33/258 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P ++ +E G+ IAID S + ++ + + A +
Sbjct: 1 MGVKDLWNILS---PLCERKPLYELQ-GKTIAIDLSGWV---------VDSQTIVDNAVQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ ++ RT LL G+ P++V +G+ P LK + +A+R D E EA
Sbjct: 48 PKMYLRNLYFRTAFLLMQGISPVFVLEGKAPTLKHKTIARR----NDVRSGFQERKEAAK 103
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K +F++ ++CK +LK MG+ V++ EAEA CA L ++G V S+D
Sbjct: 104 KGGRTQFNRVL--------NECKEMLKFMGIACVQSYGEAEAMCAYLNENGLVDGCVSQD 155
Query: 181 MDSLTFGAPRFLRHLMDP------SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 234
D +GA R+ ++ I V E KI + LN+ ++ I L +L GCD
Sbjct: 156 SDCFLYGAKIVYRNFCTSKGNNGATAGSIDVYNME--KIEKTLNIGRNKMIVLALLCGCD 213
Query: 235 YCDSIRGIGGQTALKLIR 252
Y + + G+G + ALK +
Sbjct: 214 YSEGVNGVGKEAALKFFK 231
>gi|449676998|ref|XP_002156033.2| PREDICTED: DNA repair protein complementing XP-G cells-like,
partial [Hydra magnipapillata]
Length = 431
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 45/280 (16%)
Query: 63 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK--QELAKRYSKRADATDDLAEAVEAGN 120
+HL MF R +LL G+KP++VFDG P+LKK Q +AK D L VE N
Sbjct: 23 AHLVLMFHRICKLLFYGIKPVFVFDGNVPELKKNTQVIAK-------IEDFLKLEVEL-N 74
Query: 121 KEDIE------KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
KE IE K +++ ++ + +D + LL+L G+P + +P EAEAQCAAL
Sbjct: 75 KEKIELELETRKQTRQAATLSAEVYNDVQDLLQLFGIPYLVSPMEAEAQCAALNLLKLTN 134
Query: 175 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE-LNLTMDQFIDLCILSGC 233
++D D FGA +++ + KIP E +K LE L LT ++ I + L+G
Sbjct: 135 GTITDDSDIFLFGAENVYKNIFNKD--KIP--ECYSSKDLETLLYLTREKLIAVAFLTGS 190
Query: 234 DYCDSIRGIGGQTALKLIRQHG--SIETILEN---------------INRERYQ-----I 271
DY + + G+GG TA+++++ + E L N ++R + + I
Sbjct: 191 DYTEGLPGVGGITAMEILQAFAKKTAEETLANFRAWVMSPNVTGNKVLDRLKAKLALDGI 250
Query: 272 PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINF 311
P ++ E + P + D+ + + +W PD E + F
Sbjct: 251 PSNFNSNEVWEAYLNP--IVDQSKEKFEWGNPDIESIKQF 288
>gi|392577150|gb|EIW70280.1| hypothetical protein TREMEDRAFT_43853 [Tremella mesenterica DSM
1558]
Length = 361
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 14/278 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYF-GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL +L K ++ S+F G+++A+DA + +++ G G +
Sbjct: 1 MGISGLLPML-----KGIQVDGHISHFKGKRLAVDAYVWLHK-----GAFGCAEDLVKGK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ T + R L G+ P VFDG P KK R RA+ G
Sbjct: 51 KTTKFVDYAMHRVRLLKHHGITPFIVFDGGPLPAKKGTEVSRAKSRAEYLARAQSMESQG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + + V +T + + L+ G+ V AP EA+AQ L + G V + +E
Sbjct: 111 RWKEARECYTKCVDITPEMAYQLIKALRAEGIEYVVAPYEADAQLCFLEREGWVDGIITE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGCDYCD 237
D D L FG + + L D + + + + +A I T F + +LSGCDY D
Sbjct: 171 DSDLLVFGCKQVVFKL-DHNGQCVWIHRERLASIRDFPMHGWTDHHFRRMAMLSGCDYLD 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
SI+GIG +TA +L+R+H ++E +L+N+ + +P+D+
Sbjct: 230 SIQGIGIKTAHRLLRKHKTVEKVLQNVRLDGMNVPKDY 267
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 38/238 (15%)
Query: 130 RTVKVTKQ--HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
++V VT + + DD +LL+ GVP + APSEAE+QCA + +SG+ YAV S+D DSL FG
Sbjct: 517 QSVSVTHKNPYYDDVHKLLEHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFG 576
Query: 188 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
A L++ + ++ + + +I EL + Q + I+ GCDY ++GIG A
Sbjct: 577 AKCLLKNFYNDKVFEL----YTLDRIRRELGIGRKQLALIAIICGCDYTTGVKGIGIVNA 632
Query: 248 LKLIRQHGSIETILE----------------------------NIN-RERYQIPEDWPYQ 278
L++I+ + + + + + +IN R + D+P +
Sbjct: 633 LEVIKAYPTFDDLYDFRDWATNDCNLKSAVADECPIRKSYKIAHINYRVNWTFSPDFPNR 692
Query: 279 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
EA +F P VTD +LQ WS P E L +F+ + D+V + ++ + K++
Sbjct: 693 EAYNMFLNPS-VTDNYKLQ--WSQPKMESLTSFMDRRSVLPLDQVKECLKILSIRKSQ 747
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L LL+ A + ES FG+ AID S I L +E G+
Sbjct: 1 MGVHNLWDLLSATA----LPLRVESLFGKVCAIDGSFWISHCL------ASESNMRHGGD 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 101
+ + F R LL+ G+KP++VFDG P K + L +R
Sbjct: 51 IVA---VFFLRICYLLDRGIKPVFVFDGCSPFAKMKTLLRR 88
>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
Length = 1274
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 49/299 (16%)
Query: 86 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 145
F+G D+ K+ + K ++ ++L + + ++ + + ++ N+D K L
Sbjct: 885 FEGISDDMDKETIDKELNENEKKGEELMK--------EYKRLKNNNITINEEMNEDIKLL 936
Query: 146 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 205
L L G+P +++P EAEAQCA L + A+ S+D D + F +++ ++K V
Sbjct: 937 LDLFGIPYIQSPCEAEAQCAYLNNNNYCDAIISDDSDVIVFSGKTIIKNFF---NKKKTV 993
Query: 206 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI----- 260
+E I +L L D I++ +L GCDY + G+G AL++I+ + E +
Sbjct: 994 EVYEKNLIERKLGLYQDDLINISMLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKFLKE 1053
Query: 261 -----LENINRERYQ----------------------IPEDWPYQEARRLFKEPEVVTDE 293
L +I +E Y+ P+++P +E FK P+V D
Sbjct: 1054 IVSNPLRHIYQENYENNYSDEIKIFLNSHKNYKLNWIFPKNFPDKEVYNCFKNPKVCKDI 1113
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKPV 349
+ +I+W P+ +I +L + +++ ++ I N +S Q R+E FF PV
Sbjct: 1114 K--KIEWHVPNMNKIIYYLNKATNISKEKIFNVLDPILKKYNVKVRSYQLRIEDFF-PV 1169
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 37/290 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ L ++LA E+ ES G+KIA+D ++ +L+ TG +M+ G
Sbjct: 1 MGVQNLWQILA----PVKSEESIESLKGKKIAVDLAI----WLVESQVTGMKMM---QGR 49
Query: 61 VTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
V+ HL+ +F R L G+K ++V DG PP+LK +E+A+R R A G
Sbjct: 50 VSKPHLRNLFFRASNFLRLGVKLVFVIDGTPPELKWEEIARRNEVRLGGGGGGARGGGGG 109
Query: 120 NKEDIEKFSKRTV---------KVTKQHND----DCKRLLKLMGVPVVEAPSEAEAQCAA 166
+ + K ++ H +C+ LL+LMGVP +++ EAEA CAA
Sbjct: 110 WRGGGRGGWRGRGRGGGGGGVRKASRSHFSGWLKECQELLELMGVPCIQSKGEAEAMCAA 169
Query: 167 LCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFID 226
L +G V +ED D+ +GA R+L + + V + + I +L+L + +
Sbjct: 170 LNSAGIVDGCMTEDGDAFLYGARIVYRNLNMATGK---VDCYRMDDIETKLDLDRGRLVA 226
Query: 227 LCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
L IL GCDY + G+G + A++ ++ S+ + ++ +N + +DW
Sbjct: 227 LAILLGCDYLPKGVPGVGKEVAMRFMK---SLPSSVDPLN-----LFQDW 268
>gi|123494006|ref|XP_001326419.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121909333|gb|EAY14196.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 414
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 26/293 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLI-----VVGRTGTEMLT 55
MGI GL ++ A + + +F+ G++IAID + +++ V+ T++L
Sbjct: 1 MGINGLLPIIQP-AGRRVHLTEFK---GKRIAIDGFVWLHKAAFKYPRQVIKDPSTKLL- 55
Query: 56 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 115
L + ++ ++ G+KPI +FDGQ K+ KR +R A +
Sbjct: 56 ---------LPYLMSKVNGIINCGIKPIIIFDGQNLPSKQITTEKRKQEREQALEKARYF 106
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
+ GN + K ++ V +T + + L+ V AP EA+AQ L KSG V A
Sbjct: 107 EQIGNNAEAFKNYQKAVAITPETVHTWIQELQRNAVEYFVAPYEADAQLVYLAKSGYVDA 166
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
V SED D + + P L D V++ + +L+ + L D F LCIL+GCDY
Sbjct: 167 VLSEDSDLIAYQCPTTLLKFDDTYH----VLQIDFQNVLKLIGLPADTFTSLCILAGCDY 222
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENIN-RERYQIPEDW--PYQEARRLFK 285
D I +G +TALK ++ +++ + ++ +P+D+ + +A FK
Sbjct: 223 IDHIDKLGPKTALKFLKDKNDPHKVIDMVKLNSKFTVPDDYHSKFDQALTTFK 275
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 127/272 (46%), Gaps = 29/272 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIK L LL P S K+ F G+ +AID S + + L VV
Sbjct: 1 MGIKDLWNLLT---PHSEKKSLFH-LNGQVVAIDLSGWVCESLNVVDYFVHPRF------ 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR-------YSKRADATDDLA 113
+L+ +F RT LL+ G+ P++V +G P LK + KR R A D A
Sbjct: 51 ---YLRNLFFRTYYLLQIGIIPVFVLEGSAPPLKYGVIIKRNQTQFRGVPPRKTANCDKA 107
Query: 114 EAVEAGN----KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCK 169
+ N K E+ R V KQ C+ LL MG+ V+AP EAEA CA L
Sbjct: 108 GGTQKPNGTESKAPSEQKRNRFHHVLKQ----CEELLSSMGLVCVQAPGEAEALCAYLNH 163
Query: 170 SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 229
G VY V S+D D +GA R R+ S V +++ KI ++L ++ + + I
Sbjct: 164 DGMVYGVISQDSDCFAYGAVRVFRNFCASQSGGGSVDVYDMDKIRMVMDLGQEKIVAMGI 223
Query: 230 LSGCDYCDS-IRGIGGQTALKLIRQHGSIETI 260
LSGCDY + + G+G + +L+ + S + +
Sbjct: 224 LSGCDYSPAGVPGVGREMINRLLNIYHSRDVL 255
>gi|159488115|ref|XP_001702066.1| predicted protein [Chlamydomonas reinhardtii]
gi|158271440|gb|EDO97259.1| predicted protein [Chlamydomonas reinhardtii]
Length = 294
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 140/295 (47%), Gaps = 18/295 (6%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL + L KS+ K + +Y G+K+AID +++ R E + +
Sbjct: 1 MGINGLLQQL-----KSISKPKHVSAYRGQKVAIDGYSWLHKGAYSCSRELCEGIWADG- 54
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+++ R LL G+ PI VFDG +K E R R +A + E+G
Sbjct: 55 ----YVRYFVGRVDLLLGNGVVPIVVFDGCRLPMKADEEDNRRRGRREALERARAHAESG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N + +R V +T L+ GV + AP EA+AQ + L G+V+AV +E
Sbjct: 111 NMAAANECYQRAVNITPWMAKVVIEALRERGVRCLVAPYEADAQLSYLALRGEVHAVLTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLT---MDQFIDLCILSGCDYC 236
D D L +G PR L + +D + V+ ++ ++ ELN+ D + +CIL+GCD+
Sbjct: 171 DSDMLAYGCPRVL-YKLDRAGHGEEVLLADL-PLVRELNMAGFDHDMLLQMCILAGCDFL 228
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP--YQEARRLFKEPEV 289
+I G+G + A LI++H ++ + +P ++ +Q LF+ V
Sbjct: 229 PNISGVGIKKAHGLIKKHRDFVRVVRTLRFNGTTVPPNYEVRFQRTLWLFRHQRV 283
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 141/316 (44%), Gaps = 41/316 (12%)
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
QEL + R D ++L + + A K+D + +VT+ +C++LL L G+P +
Sbjct: 902 QELTNNTATRVDFDEELKQ-LRAQQKKD----RRDADEVTQTMIAECQQLLTLFGLPYIT 956
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL- 214
AP EAEAQCA L G V + ++D D+ FG R +++ + + +E +A+ L
Sbjct: 957 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAK----FVECYLAQDLT 1012
Query: 215 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI-------------- 260
E NLT ++ ID+ L G DY I GIG TAL+++ + ++E
Sbjct: 1013 SEFNLTREKMIDIAQLLGSDYTTGIPGIGPVTALEILSEFQTLEAFRTWWDGVQSGQIKK 1072
Query: 261 ---LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
+N R++++ +P ++P + PEV +D E Q W PD L
Sbjct: 1073 DEDAKNPFRKKFRKNQGTKLFLPPNFPDPRVTDAYLHPEVDSDPEPFQ--WGVPDLAALR 1130
Query: 310 NFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTP 365
FL S+ G++ +R + I + + + +Q + FF A R
Sbjct: 1131 TFLSSQIGWSWERTDEVLVPVIRDMNRREKEGTQANITRFFDGAVGAGAFAPRVRGNAAG 1190
Query: 366 KATTNKKSKAGGGGGR 381
+ KK G G R
Sbjct: 1191 SGPSGKKKGTGAAGKR 1206
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L +L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTNLWTVLQPCA----RPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+KP++VFDG P LK+Q ++ R S+R +D
Sbjct: 53 --SHIVGFFRRVCKLLFIGIKPVFVFDGGAPALKRQTISNRKSRREGRRED 101
>gi|392589296|gb|EIW78627.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 318
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 21/291 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYF-GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS++ QK S F G+ +A+DA + +++ V TE+ T G
Sbjct: 1 MGISGLLPLL-----KSIQVQKHLSEFEGQTLAVDAYVWLHRG---VYTCATELAT---G 49
Query: 60 EVTSHLQGMFTRTIRLLEAG-MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T+ +RLL+ ++P VFDG P K+ ++R +R +
Sbjct: 50 KRTNKYVDYAMSRVRLLKHHKIQPYIVFDGGPLPAKRGTESERKQRRDENLARANALAAQ 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G +F + V VT Q + L+ VP V AP EA+AQ A L ++G V + +
Sbjct: 110 GKHTQAREFYLKCVDVTPQMAFQLIKALRAEAVPYVVAPYEADAQLAYLERTGLVDGIIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM-----DQFIDLCILSGC 233
ED D L FG L L + I + + + + +++ QF + ILSGC
Sbjct: 170 EDSDLLVFGCKHVLFKLDAVACTLISIQRKDFGSVTDAGGVSLVGWNDAQFRAMAILSGC 229
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ-IPEDWPYQEARRL 283
DY SI GIG +TA L+R+H +++ ++ + ER + +P + Y E+ RL
Sbjct: 230 DYLPSIPGIGLKTAATLLRRHRTVDQVVRALRFERKKNVP--YNYIESFRL 278
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 133/265 (50%), Gaps = 20/265 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL KLL ++A + + + E+ + +A+D S+ + + L + ++ N
Sbjct: 1 MGVKGLWKLL-ESAGQPITLESLEN---KILAVDISLWLNESLRGMRDHQGSLIEN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+HL G+F R +LL ++P++VFDG P LKKQ + SK D L E +
Sbjct: 53 --AHLLGLFYRLCKLLFFKIRPVFVFDGGVPLLKKQTI----SKLVDVQRSLEEQQTSLI 106
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E ++ + V+ + +C+ LL L G+P + +P EAEAQCA L + Q ++D
Sbjct: 107 QEH-KRQERMAASVSNEMYSECQELLSLFGIPYIVSPMEAEAQCAVLDFTNQTDGTITDD 165
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D FG R++ R+ + EF + +I + L + I L L G DY D I
Sbjct: 166 SDIFLFGGRNIYRYVF----RESKLAEFYDSQRIQRLMGLDRKKMITLAYLLGSDYTDGI 221
Query: 240 RGIGGQTALKLIRQHGSIETILENI 264
+ +G A++L+ G T L+ I
Sbjct: 222 KNVGIVMAMELLSTFGDDLTGLQKI 246
>gi|403373775|gb|EJY86812.1| Exonuclease 1, putative [Oxytricha trifallax]
Length = 1007
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 138/293 (47%), Gaps = 18/293 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+ L K L++ K++ Y G ++A+D Y +L T E + G+
Sbjct: 1 MGIQNLLKHLSEIE----KKKHIRDYAGLRVAVDG----YCWLHKAVYTCKEQMAQ--GQ 50
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
L T+ I +L+ + P+ VFDG ++KK R R E ++ G
Sbjct: 51 GLDKLIQYCTKRINMLKNHNVTPVMVFDGGKLNMKKSTEEVRQKTREKNYKKFQEYMKKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N + K ++ +T Q ++LK V + AP EA+AQ A L G V V +E
Sbjct: 111 NMDKAIKKYGESIDITPQMAHVLIQVLKAQEVEYIVAPYEADAQLAFLWHKGHVQVVFTE 170
Query: 180 DMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FG + F + D +I + + + K + T D + CILSGCDY DS
Sbjct: 171 DSDLLAFGVKKVFFKMDSDGFGIEIDLDKLQTIKKPDFTMFTQDMLLTTCILSGCDYLDS 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENI----NRERYQIPEDW--PYQEARRLFK 285
I+GIG A KL+++ G ++T + + + + IP+D+ Y++A FK
Sbjct: 231 IKGIGFMKAQKLVQESGPVDTFHDVLGYLKDEGKSVIPDDYEEDYKKAFLTFK 283
>gi|323450159|gb|EGB06042.1| hypothetical protein AURANDRAFT_29882, partial [Aureococcus
anophagefferens]
Length = 306
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 25/287 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNE--- 57
MG+ GL + S + Y +A+D Y +L G +E
Sbjct: 1 MGVSGLLPMF----RGSTQTVHVSRYAHEVVAVDG----YAWL----HRGVHACASELGA 48
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G H++ R LL +KP+ VFDG K + A R KR A ++
Sbjct: 49 GGASDKHIEFCMGRVALLLHYKVKPLLVFDGGALPAKAAQEASRRGKREHAKAMASQKAR 108
Query: 118 AGNKEDIEKFSKRTVKVT----KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
+ E+ K+ + V VT KQ D C V + AP EA+AQ A L +SG+
Sbjct: 109 EDSHEEARKWYAKCVDVTPVMAKQLVDACAARWGDR-VDFLVAPYEADAQLAQLARSGEA 167
Query: 174 YAVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVA----KILEELNLTMDQFIDLC 228
A+ SED D+L +G PR L L D S++++ + + A L+ T D F+ +C
Sbjct: 168 AAIVSEDSDNLAYGVPRVLFKLDADGSAQQVVLADLFAAGPGVNALDVRGWTQDMFVTMC 227
Query: 229 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
L+GCDY ++++G+G + A +L+ ++ + +L + E P+D+
Sbjct: 228 ALAGCDYVEAVKGVGIKNAHRLVARYKDRKKVLRALRYECAACPDDY 274
>gi|389583279|dbj|GAB66014.1| endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 434
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+K+ + +D L L +P+ ++AE +CA C S + V S+DMD+L FGAP
Sbjct: 264 IKINSKTANDIYNYLSLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDMDALAFGAPNL 322
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+R +M+ R I ++L ELN+ +QFID CILSGCDY I GIG A K+I
Sbjct: 323 IRFIMNKKKRHI----INKDELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHKII 378
Query: 252 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 284
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 379 KKYKTIETFLESSAFNKYKNSKLFDQKLNGISMSLNDYIVNEFTYEQARKVF 430
>gi|297845884|ref|XP_002890823.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp.
lyrata]
gi|297336665|gb|EFH67082.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp.
lyrata]
Length = 744
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 36/333 (10%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL P +KE + G +A+D +++ + R + L +
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELE-----GCIVAVDTYSWLHKGALSCSRELCKGLPTK-- 53
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
H+Q R L G+KPI VFDG P +K ++ KR R ++LA A+E
Sbjct: 54 ---RHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + + V ++ + ++L+ V V AP EA+AQ L + QV A+
Sbjct: 108 ANGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMTFLAITKQVDAI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG PR + MD + EF+ +K+ + +L++ F +++CILS
Sbjct: 168 ITEDSDLIPFGCPRIIFK-MDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEV 289
GCDY S+ G+G + A LI + S + +++++ +P + ++ A FK V
Sbjct: 224 GCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRV 283
Query: 290 VTDEEQLQIKWS--------APDEEGLINFLVS 314
+ I S D E LI+FL S
Sbjct: 284 YDPNTEDIIHLSDISDYLGEDSDFENLIDFLTS 316
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 47/275 (17%)
Query: 77 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV---- 132
+ +KP Y DG ++ KR +DL +A E N +I+ F ++
Sbjct: 460 DKALKPEYSNDGSSEEIYILS-PKRTCIDETNKNDLRDANEVNNLLNIDHFPDSSMHGML 518
Query: 133 ------KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
+ + ++D +++LKL G+P + APSEAE+QCA L +SG YAV ++D D+L F
Sbjct: 519 TCTGNSNIIQDYHDAIQKMLKLFGIPYIVAPSEAESQCAHLNESGACYAVITDDSDALVF 578
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
GA R L++ + + ++ E ++ +L + + + I+ GCDY I+G+G
Sbjct: 579 GANRVLKNFYNSNIFEVYTSE----RLFSQLGIGRQELALIAIICGCDYTTGIKGVGIIN 634
Query: 247 ALKLIRQHGSIETILE----------------------------NIN-RERYQIPEDWPY 277
AL++I+ + + + E +IN R + D+P
Sbjct: 635 ALEIIKAYPTFNDLYEFRKWATSDCDLETAISDPCPLKKAYKEAHINYRIHWTFSSDFPN 694
Query: 278 QEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
EA L P + + ++ W P+ ++ F+
Sbjct: 695 LEAYNLLLHPNITN---EFKLSWVTPNIPAILTFM 726
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ L LLA + + E+ G+K AIDAS + L +E G+
Sbjct: 1 MGVQHLWDLLA----AAGLPARIEALVGKKCAIDASFWLSHCL------ASESNMRHGGD 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 101
V + F R LLE G+KPI+VFDG+PP K++ L KR
Sbjct: 51 V---IGVFFLRICYLLEKGIKPIFVFDGKPPVAKRKTLIKR 88
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 52/245 (21%)
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
+L L G+P + APSEAEAQC L +SG+VYAV S+D D+L FGA R L++ + +I
Sbjct: 650 MLDLFGIPYMHAPSEAEAQCCFLNQSGEVYAVISDDSDTLPFGARRILKNFFNSRVFEI- 708
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI---- 260
+ ++I EL L+ +Q L I+ GCDY D + GIG AL++I+ + + +
Sbjct: 709 ---YLSSRIKSELGLSQEQLALLAIICGCDYTDGVCGIGIVNALEVIKAYPTFNDLYAFR 765
Query: 261 --------LENINRERYQIPE-----------------DWPYQEARRLFKEPEVVTDEEQ 295
L+N ++ I E D+P EA LF +P + +++
Sbjct: 766 AWATTDVDLKNATKDECPIREAYKKAHINYRVHWKFSCDFPNLEAYTLFLKPRI---DKR 822
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK----------------AAKNKSSQ 339
Q KW+ P + F+ + + +++ + +++ +NK S+
Sbjct: 823 SQFKWTPPQVPEIKQFMTNNSSLPPEQIDACLNELQRRRVFQYLIQDLMPEITCRNKKSK 882
Query: 340 GRLES 344
R ES
Sbjct: 883 SRAES 887
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVG--RTGTEMLTNEA 58
MG+ GL +A + + E+ GRK AIDAS I L+ R G ++
Sbjct: 1 MGVSGLWDAVAAAGLCA----RIEALHGRKCAIDASFWIAHALVSQENLRRGFDIYA--- 53
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 101
F + LLE ++PI+VFDG PPD K++ L KR
Sbjct: 54 --------IFFLKICYLLETRIRPIFVFDGIPPDAKRRTLLKR 88
>gi|429964483|gb|ELA46481.1| hypothetical protein VCUG_02025 [Vavraia culicis 'floridensis']
Length = 414
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 151/296 (51%), Gaps = 22/296 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL +++ +K++ ++ +I ID ++ L + ++ N
Sbjct: 1 MGIKGLLPIVS----PCLKKRHISAFKNHRIGIDGHSWLHCILPSIA---LQLYNN---- 49
Query: 61 VTSHLQG-MFTRTIR-LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
V +HL +F + I+ + + G+ P+ VFDG K +R +KR +A +
Sbjct: 50 VRTHLHHDIFLKRIQGVRKHGVIPVVVFDGDSLPSKCVINERRRTKREEARRMAEIEMSK 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN D ++ ++ ++++ + + LK V V+ +P E++AQ + L + ++++ +
Sbjct: 110 GNVRDAMRYMAGSISISREMVAEIAQFLKQNDVEVIISPYESDAQLSYLQRINYIHSIMT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
ED D + + L + VM +E + E+ + D +D+CILSGCDY ++
Sbjct: 170 EDSDLIVYNCNNILYKYANNH-----VMHYERSVFREKNDFLCDNLLDVCILSGCDYLEN 224
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTD 292
++G+G +A+KL+++ S+E ++ + R + +PE + + +AR FK +VV D
Sbjct: 225 VKGVGINSAIKLMKKLRSVELVVNEMRRTK-SVPESYLSNFIKARLTFKY-QVVYD 278
>gi|409048628|gb|EKM58106.1| hypothetical protein PHACADRAFT_88937 [Phanerochaete carnosa
HHB-10118-sp]
Length = 538
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 11/212 (5%)
Query: 106 ADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE--APSEAEAQ 163
A+ +D A + + + +S+RT T Q D+ K +++ MGVP +E P EAEA
Sbjct: 300 AEDVEDAATVLTQKSTVLFDSYSRRTQPPTTQTYDESKEIIRAMGVPCIEPDGPFEAEAL 359
Query: 164 CAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ 223
A++ GQ VASED D + +GAP +R++ + R P++ + L L ++
Sbjct: 360 AASMVLHGQADYVASEDTDVIVYGAP-LMRNI---AKRSDPLVILNGTDVRAALELDHER 415
Query: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE---A 280
F+D +L G D+ I+ +G ALK IR++GSIE +LE R ++P Q+ A
Sbjct: 416 FVDFALLLGTDFSQRIKNVGPTRALKFIREYGSIEQMLEQETRYPPRVPLSLYLQQVEVA 475
Query: 281 RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 312
R +F V DE LQ K PD+ + L
Sbjct: 476 RVVFHTLPPVPDESALQEK--EPDDTAIQEIL 505
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 120/255 (47%), Gaps = 37/255 (14%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L LL P + K +E + G+ IAID S + +E L + +
Sbjct: 1 MGVKNLWSLLT---PVAEKMPLWELH-GKAIAIDLSGWV---------CDSENLNHNISQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ +F RT LL G PI+VFDG+PP LK + KR + GN
Sbjct: 48 KNMYLRNLFFRTCNLLLIGAIPIFVFDGEPPLLKYSTIEKRIN---------------GN 92
Query: 121 KEDIEK--FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
K I+ KR + KQ C+ LL +MGV V EAE CA L K+G V + +
Sbjct: 93 KAPIKTNIIRKRLNSLQKQ----CELLLNIMGVTCVYGHGEAEQLCAILNKNGIVNGIVT 148
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD- 237
+D D +GA R+ + + V + + I + L + + I L +L GCDY +
Sbjct: 149 QDSDCFLYGARVVYRNFNASGNGSVDV--YCMGSIEKNLKIGRSKMIALSLLCGCDYDEK 206
Query: 238 SIRGIGGQTALKLIR 252
+ GIG TA+K ++
Sbjct: 207 GVLGIGKDTAIKFLQ 221
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 38/238 (15%)
Query: 130 RTVKVTKQH--NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 187
+V + +H ++ +LL GVP + APSEAE+QCA + +SG+ YAV S+D DSL FG
Sbjct: 578 HSVSLNHKHPYYENIHKLLDHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFG 637
Query: 188 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 247
A L++ + ++ +++ +I EL + Q + I+ GCDY + ++GIG A
Sbjct: 638 AKCLLKNFYNDKVFEL----YKLDRIRRELGIGRKQLALIAIICGCDYTNGVKGIGIVNA 693
Query: 248 LKLIRQHGSIETI----------------------------LENIN-RERYQIPEDWPYQ 278
L++I+ + + E + L ++N R + D+P +
Sbjct: 694 LEVIKAYPTFEDLYDFRDWATSDLSVKGAVTDECPIRKSYKLAHVNYRVNWTFSPDFPNR 753
Query: 279 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
EA +F P VTD +L+ W PD LI+F+ ++ D+V + + + K++
Sbjct: 754 EAYNMFLNPS-VTDSYKLE--WRPPDVNSLISFMGRKSILPLDQVKECLRMLSLRKSQ 808
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 6 LTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHL 65
L++ +++ + Q+ ES FG+ AID S I L +E G++ +
Sbjct: 66 LSQAVSEASKNITNSQQVESLFGKVCAIDGSFWISHCL------ASESNMRHGGDIVA-- 117
Query: 66 QGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 101
F R LL+ G+KP++VFDG P K + + +R
Sbjct: 118 -VFFLRICYLLDRGIKPVFVFDGCSPFAKMKTIIRR 152
>gi|407917461|gb|EKG10769.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 730
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 18/365 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS+ +Q + G+ I +DA +++ G +
Sbjct: 1 MGISGLLPLL-----KSIHKQCHLRQFSGQTIGVDAYGWLHR-----GTVACAIDLALDK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H+ R L+ G+KP VFDG K+ +R +KR ++ E ++ G
Sbjct: 51 PTRKHIDYCMHRVRMLIHFGIKPYLVFDGDHLPGKEVTNKERAAKRKESKRVGMELLKLG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ V VT + LK++ V V AP EA++Q L K G + + SE
Sbjct: 111 KTSQAHLELQKAVDVTPEMARMFIEELKMLNVDYVVAPYEADSQMVYLEKRGIIQGIVSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA + L +D + + +F K + + T DQF + ILSGCDY
Sbjct: 171 DSDLLVFGA-KCLITKLDNYGECVVINRADFTACKEISLVGWTDDQFRQMAILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWP--YQEARRLFKEPEVVTDEE 294
SI +G TA +L+R++ +++ +L I + ++++P +P + +A F V
Sbjct: 230 SISKMGLMTAYRLLRKYKTVDRLLRQIQFDGKFKMPAGYPEAFAQAEMTFLYQWVFCPAA 289
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 354
+ + ++ PD + + L+ + ++ I + N +L F+P+ A
Sbjct: 290 KQLVHFTDPDPDVEVEKLLYIGRYMEPKIAAGIARGDLHPNTKRPIQLPQSFRPI-KLPA 348
Query: 355 PIKRK 359
P+ RK
Sbjct: 349 PVSRK 353
>gi|68076257|ref|XP_680048.1| endonuclease [Plasmodium berghei strain ANKA]
gi|56500919|emb|CAI05790.1| endonuclease, putative [Plasmodium berghei]
Length = 390
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+K+ Q +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 220 IKINSQTANDIYNYLLLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 278
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+R + + R I + +IL ELN+ +QFID CILSGCDY I GIG A ++I
Sbjct: 279 IRFITNKKKRHIINKD----EILNELNINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 334
Query: 252 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 284
+++ +IET LE+ ++Y I ++ Y++AR++F
Sbjct: 335 KKYKTIETFLESSAFDKYSNTKRFNRKLSDVSMSLKDYILNEFTYEQARKIF 386
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 35/243 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 1018 EVTQIMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIY 1077
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + + +E + LE E +LT D+ I + L G DY D I GIG TAL++I
Sbjct: 1078 KNMFN----QAKFVECYLTSDLEKEFDLTRDKLIAVAHLLGSDYTDGIPGIGPVTALEII 1133
Query: 252 RQHGSIETILE-----NIN------------RERYQ-------IPEDWPYQEARRLFKEP 287
+ GS+E E +N R++++ +P +P +++P
Sbjct: 1134 SEFGSLEKFKEWWTAVQMNQIPKEADAKIPFRKKFRKNATKLFLPPAFPDARVELAYQQP 1193
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLE 343
+V D Q +W PD L +FL++ G+N +R + I+ + ++ +Q +
Sbjct: 1194 DV--DPTQEAFQWGVPDLAALRSFLMATIGWNEERTDEVLVPVIKDMNRRTDEGTQANIT 1251
Query: 344 SFF 346
+FF
Sbjct: 1252 AFF 1254
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++L A + K E+ R++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWQILQPCA----RPTKIETLNRRRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
SH+ G F R +LL G+KP++VFDG P LK+Q + R ++R +D A
Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKARREGRREDAA 103
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 42/268 (15%)
Query: 116 VEAGNKEDIE------KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCK 169
++ NKE+ E K K +++ + NDD K LL G+P +++P EAEAQC+ L
Sbjct: 1183 IKETNKENEELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNN 1242
Query: 170 SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 229
A+ S+D D L F +++ + +K V +E I E+L L ++ I++ +
Sbjct: 1243 KNYCDAIISDDSDVLVFSGKTVIKNFFN---KKKTVEVYEKKAIEEKLGLYQEELINISL 1299
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIE--TILENI-------------NRERYQ---- 270
L GCDY + GIG AL++I+ + E IL++I N E Q
Sbjct: 1300 LCGCDYTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSNPFRKIDKNMYNEEIQQFLNT 1359
Query: 271 ---------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321
P ++P +E + FK P+V TD ++ + W PD + + FL + +
Sbjct: 1360 HKNYKLNWIFPNNFPDREVYKCFKYPKVCTDIKKFE--WHVPDIKSITKFLHKTTNISEE 1417
Query: 322 RVTKAIEKIKAAKN---KSSQGRLESFF 346
+V + I N ++ Q ++E FF
Sbjct: 1418 KVLNVLNPILQKYNVNVRTYQSKIEDFF 1445
Score = 47.8 bits (112), Expect = 0.009, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 26/139 (18%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQF----------------LI 44
MG+KGL +++ P ++ E + G++IAID S+ +Y+ +
Sbjct: 1 MGVKGLWSIVS---PVGVRVNP-EIFTGKRIAIDVSIWLYELTYANNVKDLRNKSFDNMS 56
Query: 45 VVGRTGTEMLTNEAGEVTS------HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
+ + N + E+ + HL F R +LL ++PI++FDG PP+LK++ +
Sbjct: 57 IFNDLWIDFSENISSEIKTDNIKKAHLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTI 116
Query: 99 AKRYSKRADATDDLAEAVE 117
+R K+ + + + E
Sbjct: 117 FQRNIKKRNYEEKFKKTAE 135
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 109/245 (44%), Gaps = 37/245 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
V +Q +L+L G+P + AP EAEAQCA L G V V ++D D FGA R +
Sbjct: 792 VNQQMISQIMTMLRLFGIPYITAPMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFK 851
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL L D I L L G DY + + G+G A++L+R+
Sbjct: 852 NMFNQSKT---VECFLLSDLERELGLDRDTLIQLAYLLGSDYTEGLAGVGPVVAMELVRE 908
Query: 254 HGSIE----------------------TILENINRERYQ---IPEDWPYQEARRLFKEPE 288
+ T + ++R++ I +DWP R + P
Sbjct: 909 FPGKDGLWKFKEWWTKVQTGKDGDESNTKFRKMFKKRFKDLYIAQDWPNTAVRDAYYHPT 968
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------QGR 341
V + +E KW PD +GL F SE G+ +V + + I NK S QG
Sbjct: 969 VDSSDEPF--KWGLPDLDGLRAFFNSELGWPQSKVDELLLPIIQKMNKRSQTNALNKQGN 1026
Query: 342 LESFF 346
L FF
Sbjct: 1027 LTDFF 1031
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77
+ E+ G+ +AID+S+ IYQF + GR G V +H+ G R +LL
Sbjct: 7 RLETVEGKVMAIDSSIWIYQFQATMRDKEGR----------GLVNAHVLGFLRRIAKLLF 56
Query: 78 AGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
G+KP++VFDG P LK+ L +R K++ A
Sbjct: 57 YGIKPVFVFDGGAPTLKRATLNERRRKKSGA 87
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 31/257 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P ++ FE G+ IAID S + ++ + + +
Sbjct: 1 MGVKDLWNILS---PLCERKPLFELQ-GKTIAIDLSCWV---------VDSQTIVDHYVQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ ++ RTI LL G+ P++V +G+ P LK +AKR R+ +
Sbjct: 48 PKMYLRNLYFRTIFLLMQGILPVFVLEGKAPALKYNTIAKRNDIRSGFQE---------- 97
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
K+ I+K + K ++CK +L+ MG+ V+ EAEA CA L + G V S+D
Sbjct: 98 KKSIQKKGRTQFKKIL---NECKEMLEYMGLACVQGHGEAEAMCAYLNEDGLVDGCISQD 154
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI-----PVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
D +GA R+ + V E+ + KI + L L ++ I L +L GCDY
Sbjct: 155 SDCFLYGAKVVYRNFCTSAQGNRGGTGGAVDEYRLEKIEKVLQLGRNKMIVLALLCGCDY 214
Query: 236 CDSIRGIGGQTALKLIR 252
D + G+G + A+KL +
Sbjct: 215 DDGLNGVGKEAAMKLFK 231
>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
Length = 307
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 41/248 (16%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T + +D LL+L G+P VE+PSEAEAQCAAL + G V V +ED D FG + +
Sbjct: 13 ITDEMKEDILELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIFVFGGRKVYK 72
Query: 194 HLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+ + +E AK E EL L Q I L +L G DY D ++G+G +++++
Sbjct: 73 NFFNEQQ----YVEAYYAKDAEKELALGKHQMIALAMLLGGDYTDGVKGVGIVNGMEILQ 128
Query: 253 Q-------HGSIETILENIN--------------------------RERYQIPEDWPYQE 279
H S++ E ++ R R+ P D+P +
Sbjct: 129 AFPIGEDIHASLQKFREWLDGMGDPPSNADGTLSNEMIFHKKHKSARHRWVAPSDFPSRA 188
Query: 280 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSS 338
+++P V D+ + + W+ P+ EGL +F G++ + ++ + + K ++ S
Sbjct: 189 IISAYQKPTV--DKSEARFSWAKPNMEGLRHFCSETLGWDQEETSRIVGPVLKVLESGSK 246
Query: 339 QGRLESFF 346
Q RLES+F
Sbjct: 247 QTRLESYF 254
>gi|403361276|gb|EJY80337.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Oxytricha
trifallax]
Length = 714
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 37/320 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L KE+ + G+ I +D ++Q R E++ + +
Sbjct: 1 MGIQGLLPALK----ALQKEKHIREFKGKTIGVDGLCWMHQGAYQCAR---ELMRDNPWQ 53
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ I+ L+ G+ PI VFDG +KK+ +R R D+ + + + G
Sbjct: 54 GLEKVIDYCVGKIKQLQINGITPIMVFDGARLPMKKRIEEQRKKAREDSRNLAEDLLAKG 113
Query: 120 NKED-IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
++ I KF + V++ ++L+ M V V AP EA+AQ A L K+G+V + +
Sbjct: 114 DQHQAIRKFME-AVEINSLMIYRLTQVLETMNVQFVVAPYEADAQLAHLFKTGKVDLIIT 172
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---------------LTMDQ 223
ED D L +G R L MDP + I + L LN D
Sbjct: 173 EDSDLLVYGVTRVL-FKMDPQGQGIYI-------DLNNLNQCDAFKMPQSNGGKVFDYDL 224
Query: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQH-GSIETILENINRERYQIPEDW--PYQEA 280
+ CIL+GCDYC+S++G+G +TALKL++++ G I I+E++ + I +++ +Q A
Sbjct: 225 LLKTCILNGCDYCESLKGVGFKTALKLMKEYNGDIRQIVESLRGKNIPIRQNYMQDFQRA 284
Query: 281 RRLFKEPEVVTDEEQLQIKW 300
FK +VV D E + K+
Sbjct: 285 ELTFKY-QVVFDMENKKQKY 303
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 31/257 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P ++ FE G+ +AID S + ++ +T+ +
Sbjct: 1 MGVKDLWNILS---PLCERKPMFELQ-GKTVAIDISGWV---------VDSQTVTDNHAQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ ++ RT LL ++P++V +G+ PDLK +AKR + R + + G
Sbjct: 48 PKMYLRNLYFRTAFLLMHEIQPVFVLEGKAPDLKHNAIAKRNNIRNGFRE--RKTAGKGR 105
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + + K +CK LL MG+ ++ EAEA CA L + G V+ S+D
Sbjct: 106 RPQLNRILK-----------ECKELLGYMGLACIQGQGEAEAMCAHLNEDGLVHGCISQD 154
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI-----PVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
D +GA R+ + V E+ + KI + L+L ++ I L +L GCDY
Sbjct: 155 SDCFLYGAKVVYRNFCTSAQGNRGGTGGAVDEYSIEKIEKALDLGRNKMIALALLCGCDY 214
Query: 236 CDSIRGIGGQTALKLIR 252
+ + G+G + A+KL +
Sbjct: 215 DEGLNGVGKEAAMKLFK 231
>gi|156096711|ref|XP_001614389.1| endonuclease [Plasmodium vivax Sal-1]
gi|148803263|gb|EDL44662.1| endonuclease, putative [Plasmodium vivax]
Length = 407
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+K+ + +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 237 IKINSKTANDIYNYLFLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 295
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+R +M+ R I + ++L ELN+ +QFID CILSGCDY I GIG A ++I
Sbjct: 296 IRFIMNKKKRHIINKD----ELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEII 351
Query: 252 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 284
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 352 KKYKTIETFLESSAFNKYKNSKLFNQKLSGISMSLNDYIVNEFTYEQARKVF 403
>gi|212546421|ref|XP_002153364.1| exonuclease, putative [Talaromyces marneffei ATCC 18224]
gi|210064884|gb|EEA18979.1| exonuclease, putative [Talaromyces marneffei ATCC 18224]
Length = 749
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 150/329 (45%), Gaps = 28/329 (8%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL P ++K KF+ G+ + +DA +++ + TE+ ++
Sbjct: 1 MGIKGLHGLLKSIQKPCNLK--KFD---GQTLGVDAYGWLHRGTVACA---TELALSKP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + R LL G+ P VFDG K A R+ KR D+ E G
Sbjct: 52 -TTRHVDFVLNRVRMLLFFGVTPYLVFDGGDLPSKSGTEADRFKKREDSRKLALELQSKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT + LK M V V AP EA+AQ L + G + + SE
Sbjct: 111 RVAEAYQEFQKAVDVTPEMARQLIEELKRMKVQYVVAPYEADAQLVYLERQGIINGIISE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVM--EFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA R L L D I + +F + + + + F +CILSGCDY
Sbjct: 171 DSDLLVFGAKRLLSKL-DQHGDCIEINRGDFAACRDISLIGWSDADFRRMCILSGCDYLS 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
+I +G +TA + +R++ +++ +L + E YQ+P + +++A F
Sbjct: 230 NIPKLGLKTAYRSMRKYKNVDKVLRVLQFEGHYQVPAGYLDSFRQAENTF---------- 279
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRV 323
L + P+ + L+ VS G D +
Sbjct: 280 -LYQRVFCPNAQKLVTLTVSGPGMKLDEM 307
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 24/265 (9%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 882 EVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 941
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + S K+ V + + + +EL+L+ +Q + + +L G DY D + G+G TA++++
Sbjct: 942 KNMFN--SNKL-VECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILS 998
Query: 253 QHGSIETILENI----------NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 302
+ E L + +P +P R + +PEV E Q W
Sbjct: 999 EFPESEGGLAAFCDWWADFRKSQATKLFLPVGFPNPAVREAYMKPEVDDSPETFQ--WGV 1056
Query: 303 PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFKPVANTS----- 353
P+ EGL +L++ G++ +R + + + N+ +Q + +F+ T
Sbjct: 1057 PNLEGLRQYLMATIGWSEERTDEVLVPVIRDMNRRDVEGTQSNITRYFEGSIGTGAKESF 1116
Query: 354 APIKRKEPENTPKATTNKKSKAGGG 378
AP ++++P NK G G
Sbjct: 1117 APRQKQKPSKRMAEAVNKLRNTGAG 1141
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +L A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWTVLQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G++P++VFDG P LK+Q + R +R DD
Sbjct: 53 --SHVVGFFRRICKLLWFGIRPVFVFDGGAPALKRQTIQGRKRRREGRRDD 101
>gi|242823476|ref|XP_002488074.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
gi|218712995|gb|EED12420.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
Length = 767
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 141/310 (45%), Gaps = 17/310 (5%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL P ++K KF+ G+ + +DA +++ TE+ N+
Sbjct: 1 MGIKGLHGLLKSIQKPCNLK--KFD---GQTLGVDAYGWLHR---GTAACATELALNKP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + R LL G+ P VFDG K A R+ KR D+ E G
Sbjct: 52 -TTRHVDFVLNRVRMLLFFGVTPYLVFDGGDLPSKSGTEADRFKKREDSRKLGLELQSIG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT + LK M + V AP EA+AQ L + G + + SE
Sbjct: 111 RTAEAYQEFQKAVDVTPEMARQLIEELKRMKIQYVVAPYEADAQLVYLEQQGIINGIISE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVM--EFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA R L L D I + +F + + + F +CILSGCDY
Sbjct: 171 DSDLLVFGARRLLSKL-DQHGDCIEINRGDFAACRDISLIGWIDADFRRMCILSGCDYLS 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
+I +G +TA + +R++ +E +L + E YQ+P + +++A F V
Sbjct: 230 NIPKLGLKTAYRSMRKYRDVEKVLRVLQFEGHYQVPAGYLDNFRKAENTFLYQRVFCPTA 289
Query: 295 QLQIKWSAPD 304
Q + + PD
Sbjct: 290 QRLVTLTVPD 299
>gi|443897892|dbj|GAC75231.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 730
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 15/279 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL D + SY G+ + +DA + +++ R E++ G+
Sbjct: 1 MGIQGLLPLLKD----VQRPVHVSSYAGKTLGVDAYVWLHRGAYGCAR---EIVL---GD 50
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T IRLL+ G+KP VFDG K+ R +R D + + G
Sbjct: 51 PTPRYIAHALSRIRLLQHFGVKPYLVFDGDKLPAKRGTEDDREQRRNDNLERANQLEREG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N + + V +T + ++LK +P V AP EA+AQ A L G + + +E
Sbjct: 111 NMQQARDLFSKCVDITPEMAFQLIKVLKQQDIPYVVAPYEADAQLAFLEAEGIIDGIITE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FG L L D + I +++ F + L T +F + ILSGCDY
Sbjct: 171 DSDLLVFGCKTVLFKL-DQAGNAIEMLQQRFWTNRQLALSGWTAVEFRQMAILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
SI G+G + A +L+R++ +++ +L+ + E + ++P D+
Sbjct: 230 SIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKLRVPNDY 268
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 39/260 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q +L+L G+P + AP EAEAQCAAL G V + ++D D FG R L+
Sbjct: 834 ITQQMISQIMIMLRLFGIPYITAPMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLK 893
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL L D+ + L L G DY D + G+G A++L+ +
Sbjct: 894 NMFNQSKT---VECFLLSDLERELGLDRDKLVRLAYLLGSDYTDGLPGVGPVVAMELLSE 950
Query: 254 HGSIETILE--------NINRERYQ------------------IPEDWPYQEARRLFKEP 287
+ + + R++ + +P +WP R + P
Sbjct: 951 FPGQDGLHKFRAWWQKVQSGRDKAEESATRFRKRFKKKFKDLYLPGEWPNPAVRDAYYHP 1010
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------QG 340
V DE + KW PD + L +F +E G++ +V + I +K S QG
Sbjct: 1011 AV--DESREHFKWGMPDLDALRDFFNAELGWDQIKVDDLLLPIIRKMSKRSQNAAPTMQG 1068
Query: 341 RLESFFK-PVANTSAPIKRK 359
L FF PV ++AP KR+
Sbjct: 1069 NLAGFFDLPVGASAAPRKRQ 1088
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA-G 59
MG+K L +LL + E+ G+ +AID+S+ IYQF M E G
Sbjct: 1 MGVKSLWQLLEPVG----RPVLLETMEGKSMAIDSSIWIYQFQAT-------MRDKEGRG 49
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
V +H+ G R +LL G+KP++VFDG P LK +A+R +K++ A A+ E
Sbjct: 50 LVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPALKMSTIAERKNKKSGAAASHAKIAE 107
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731 SS1]
Length = 1334
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 119/262 (45%), Gaps = 42/262 (16%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + +L+L G+P AP EAEAQCA L + G V + ++D D FG R +
Sbjct: 968 VTLQMITQIQNMLRLFGIPYTVAPMEAEAQCAELVQLGLVEGIITDDSDVFLFGGLRVFK 1027
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL+L D+ I L L G DY D + +G A++L+R+
Sbjct: 1028 NMFNQSKT---VECFLLSDLGRELSLDRDKLIRLAYLLGSDYVDGLPKVGPVVAMELLRE 1084
Query: 254 -------HGSIE----------------TILENINRERYQ---IPEDWPYQEARRLFKEP 287
H E T ++RY+ +P DWP R + P
Sbjct: 1085 FPGEDGLHKFKEWWVKVQSGKDKPADNATPFRRKFKKRYKDLYLPVDWPNSNVRDAYSHP 1144
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI--------KAAKNKSSQ 339
V DE KW PD + + FL E G+N+ +V + + I KAA+ + Q
Sbjct: 1145 TV--DESTEPFKWGLPDLDAMRVFLRDELGWNASKVDETLLPIIRKVGQRGKAAQ-ANKQ 1201
Query: 340 GRLESFFKPVANTSA--PIKRK 359
G L SFF T A P KR+
Sbjct: 1202 GTLTSFFDVSVGTGAYEPRKRQ 1223
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA 78
E+ G+ +AID+S+ IYQF + GR G V +H+ G R +LL
Sbjct: 89 LETLEGKVLAIDSSIWIYQFQATMRDKEGR----------GLVNAHVLGFLRRICKLLYY 138
Query: 79 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G+KP++VFDG P LK+ + +R ++ A + A+ E
Sbjct: 139 GVKPVFVFDGGAPALKRVTITERKKRKRGAAESHAKLAE 177
>gi|392589053|gb|EIW78384.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 712
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 125 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVV--EAPSEAEAQCAALCKSGQVYAVASEDMD 182
E +++RT T + D CK +L+ MGVP V + P EAEA A++ GQ VASED D
Sbjct: 496 ESYTRRTKPPTTETYDQCKEILRAMGVPCVDIQGPYEAEAVAASMVAHGQADYVASEDTD 555
Query: 183 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 242
L + P LR++ +S+ +P+M E ++ + L L+ +Q++D IL G D+ I+ +
Sbjct: 556 VLVYEVP-LLRNI---ASKDVPLMLLEGLQVRDALQLSDEQYVDFAILLGTDFSQRIKNV 611
Query: 243 GGQTALKLIRQHGSIETIL 261
G AL+ IR++G+IE +L
Sbjct: 612 GPARALRFIRKYGTIEKML 630
>gi|403371708|gb|EJY85737.1| XPG family protein [Oxytricha trifallax]
Length = 734
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 148/292 (50%), Gaps = 32/292 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL +LL ++++ + G+ ++D +Y+ G + E G
Sbjct: 1 MGVQGLLQLL----KPALRDCHLSQFRGQTASVDIMTWLYK--------GAYAYSYELG- 47
Query: 61 VTSHLQGMFTRTIRLLE----AGMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLA-E 114
+ S G +++L+ G+KPI VFDGQ LK +E ++ S +LA +
Sbjct: 48 LDSQTLGFLAYPLKMLKLVQTYGIKPICVFDGQ--HLKAKEATEKVRSHNKQVNKELAMQ 105
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
E GN+ED K+ R++ + + D +LK + + +V AP EA++Q A + K G
Sbjct: 106 KAEDGNEEDARKYFMRSLILRSKMIDLFIDILKKLEIEMVVAPYEADSQIAYMVKEGIAD 165
Query: 175 AVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNL------TMDQFIDL 227
SED D + +G P+ L L + + + +F+ + + L + +QF+ +
Sbjct: 166 FAISEDSDLIAYGCPKLLMKLNFNGYCKVFSINDFKANNQITDQTLAYLQKTSREQFVQI 225
Query: 228 CILSGCDYCDSIRGIGGQTALKL-IRQHGSIETILENINRERY---QIPEDW 275
CI++GC+Y SI+ +G + A+KL ++ +G +E +LE++ + ++PE +
Sbjct: 226 CIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGY 277
>gi|124802099|ref|XP_001347365.1| endonuclease, putative [Plasmodium falciparum 3D7]
gi|23494944|gb|AAN35278.1|AE014830_22 endonuclease, putative [Plasmodium falciparum 3D7]
Length = 388
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+K+ + +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 218 IKINSKTANDIYNYLLLENIPIFITKNDAEKECAIQC-SHERDIVVSDDTDALAFGAPNL 276
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+R + + R I E ++L ELN+ +QFID CILSGCDY I GIG A ++I
Sbjct: 277 IRFITNKKKRHIINKE----ELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEII 332
Query: 252 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 284
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 333 KKYKTIETFLESNAFNKYKNSKLFNQKLNGTSMSLNDYILNEFTYEQARKVF 384
>gi|221055149|ref|XP_002258713.1| endonuclease [Plasmodium knowlesi strain H]
gi|193808783|emb|CAQ39485.1| endonuclease, putative [Plasmodium knowlesi strain H]
Length = 415
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+K+ + +D L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 245 IKINSKTANDIYNYLSREKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 303
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+R +M+ R I ++L ELN++ +QFID CILSGCDY I GIG A +I
Sbjct: 304 IRFIMNKKKRHI----INKDELLNELNISYEQFIDFCILSGCDYSAKIPGIGPVKAHNII 359
Query: 252 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 284
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 360 KKYKTIETFLESSAFNKYKNSKLFNQKLNGISMSLNDYIVNEFTYEQARKVF 411
>gi|82704983|ref|XP_726779.1| structure-specific endonuclease [Plasmodium yoelii yoelii 17XNL]
gi|23482332|gb|EAA18344.1| structure-specific endonuclease of the XPG/RAD2 family [Plasmodium
yoelii yoelii]
Length = 390
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+K+ Q +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 220 IKINSQTANDIYNYLLLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 278
Query: 192 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+R + + R I + +IL EL++ +QFID CILSGCDY I GIG A ++I
Sbjct: 279 IRFITNKKKRHIINKD----EILNELDINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 334
Query: 252 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 284
+++ +IET LE+ ++Y I ++ Y++AR++F
Sbjct: 335 KKYKTIETFLESSAFDKYSNTKRFNQKLSDVSMSLKDYILNEFTYEQARKIF 386
>gi|326437161|gb|EGD82731.1| hypothetical protein PTSG_03380 [Salpingoeca sp. ATCC 50818]
Length = 531
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 32/291 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL L+ ++ E + G+++AID S Y+ E+L N E
Sbjct: 1 MGVPGLINLVR----PVVQTVNLERFTGQRVAIDISSFAYKGCY---SRSLELLRN--AE 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+ +F R L AG+ P+ VFDG P K +E A+R +R A ++ + + G
Sbjct: 52 DLRPYRFVFKRLALLTTAGITPVVVFDGAPLAAKAEENARRQRQRKAAREEALKLRKQGK 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ K S+R + V++ +L + + V AP EA+AQ A + ++G+V AV S+D
Sbjct: 112 VHEARKASRRALHVSRDMQRTLMAMLDRLNIEYVVAPYEADAQLAFMARTGRVAAVLSDD 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLT------------MDQFIDLC 228
D L FG P LR+L SS ++F L+EL LT +D
Sbjct: 172 SDMLCFGVPHVLRNLR--SSGTCDSIQFH---HLQELTLTRYGVRLSLRDLRLDTLQLAA 226
Query: 229 ILSGCDYCD-----SIRGIGGQTALKLIRQHGSIETILENINRERYQIPED 274
+LSGCDY I GIG +TA+ + ++ + I++++ R+ Y I +D
Sbjct: 227 VLSGCDYLPKHSGAHIHGIGMRTAMYVTHKYKTYTDIMQHL-RQNYIITDD 276
>gi|403337691|gb|EJY68068.1| XPG family protein [Oxytricha trifallax]
Length = 719
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 148/292 (50%), Gaps = 32/292 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL +LL ++++ + G+ ++D +Y+ G + E G
Sbjct: 1 MGVQGLLQLL----KPALRDCHLSQFRGQTASVDIMTWLYK--------GAYAYSYELG- 47
Query: 61 VTSHLQGMFTRTIRLLE----AGMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLA-E 114
+ S G +++L+ G+KPI VFDGQ LK +E ++ S +LA +
Sbjct: 48 LDSQTLGFLAYPLKMLKLVQTYGIKPICVFDGQ--HLKAKEATEKVRSHNKQVNKELAMQ 105
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
E GN+ED K+ R++ + + D +LK + + +V AP EA++Q A + K G
Sbjct: 106 KAEDGNEEDARKYFMRSLILRSKMIDLFIDILKKLEIEMVVAPYEADSQIAYMVKEGIAD 165
Query: 175 AVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNL------TMDQFIDL 227
SED D + +G P+ L L + + + +F+ + + L + +QF+ +
Sbjct: 166 FAISEDSDLIAYGCPKLLMKLNFNGYCKVFSINDFKANNQITDQTLAYLQKTSREQFVQI 225
Query: 228 CILSGCDYCDSIRGIGGQTALKL-IRQHGSIETILENINRERY---QIPEDW 275
CI++GC+Y SI+ +G + A+KL ++ +G +E +LE++ + ++PE +
Sbjct: 226 CIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGY 277
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 40/249 (16%)
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
+L+L G+P + AP EAEAQCA L G V + ++D D FG R L+++ + S
Sbjct: 848 MLRLFGIPYITAPMEAEAQCAELLALGLVDGIITDDSDVFLFGGARVLKNMFNQSKT--- 904
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI------------- 251
V F ++ + EL L ++ I L L G DY + + G+G A++L+
Sbjct: 905 VECFLLSDLGRELGLEREKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFSGSDGLHKFR 964
Query: 252 ---RQHGSIETILEN-----------INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 297
R+ S LE+ +E Y +PEDWP R + P V + EE
Sbjct: 965 EWWRKVQSGRDTLEDNKSKFRKRFKKRFKELY-LPEDWPNPTVRDAYYHPTVDSSEEPF- 1022
Query: 298 IKWSAPDEEGLINFLVSENGFNSDRVT----KAIEKI---KAAKNKSSQGRLESFFKPVA 350
KW PD + L F +E G+ ++V I K+ A N + QG L +FF
Sbjct: 1023 -KWGLPDLDALRQFFNAELGWAQEKVDDLLLPVIHKMGKRNQAGNTNRQGNLNTFFDVPT 1081
Query: 351 NTSAPIKRK 359
AP KR+
Sbjct: 1082 GAGAPRKRQ 1090
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MG+K L LL + E+ G+ +AID+S+ IYQF + GR
Sbjct: 1 MGVKSLWSLLEPVG----RPVPLETMEGKAMAIDSSIWIYQFQATMRDKEGR-------- 48
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
G V +H+ G R +LL G+KP++VFDG P LK+ +++R +K++ A A+
Sbjct: 49 --GLVNAHVLGFLRRISKLLFYGIKPVFVFDGGAPALKRTTISERKNKKSGAAASHAKVA 106
Query: 117 E 117
E
Sbjct: 107 E 107
>gi|353240941|emb|CCA72785.1| related to EXO1-exonuclease which interacts with Msh2p
[Piriformospora indica DSM 11827]
Length = 827
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 137/274 (50%), Gaps = 21/274 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTG--TEMLTNE 57
MGI+GL LL KS+++Q K G+ +A+D + +++ G G TE+ T
Sbjct: 1 MGIQGLLPLL-----KSIQQQVKLSDLSGKTLAVDGYVWLHK-----GAYGCATELAT-- 48
Query: 58 AGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
G+ T+ IRLL G++P VFDG P K+ +R R ++ +
Sbjct: 49 -GKPTTKYIDYAMHRIRLLRYYGIEPYLVFDGGPLPAKEGTELERRKNREESLAKAKQLA 107
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
G + R V ++ +H + L+ V V AP EA+AQ A L +SG V +
Sbjct: 108 SRGRHSEARDLYARCVDISPKHAFQLIKALRAESVAYVVAPYEADAQLAYLERSGIVQGI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM---DQFIDLCILSGC 233
+ED D L FG + + +D S+ + + + ++NL + +F + ++SGC
Sbjct: 168 LTEDSDLLVFGC-QNVYFKLDTSTYTVAHIARAKFSQVTDINLALWTDTEFRHMAMMSGC 226
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
DY + ++GIG +TA KL+R++ S+E +L+ I E
Sbjct: 227 DYLEGLKGIGVRTANKLLRKYKSLERVLKFIALE 260
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 33/258 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P S ++ FE G+ IAID S + ++ +T+ +
Sbjct: 1 MGVKDLWNILS---PLSERKPLFELQ-GKAIAIDLSCWV---------VDSQSVTDNIAQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
HL+ +F RT L + P++V +G P LK +AKR R +
Sbjct: 48 PKMHLRNLFFRTSYFLLHDIFPVFVLEGAAPTLKHNTIAKRNDIR--------------H 93
Query: 121 KEDIEKFSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+I+K +K+ + + +C+ +LK MG+ V+ EAEA CA L + G V S+
Sbjct: 94 GREIKKTNKKAGRSRFNYVLKECEEMLKYMGLTCVKGYGEAEAMCAYLNEDGLVDGCISQ 153
Query: 180 DMDSLTFGAPRFLRHLM-----DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 234
D D L +GA R+ + ++ + E+ + KI + NL ++ I L ++ GCD
Sbjct: 154 DSDCLLYGAKIVYRNFCTSTQGNRTTSSGSIDEYSMEKIQQVFNLGRNKMIALALMCGCD 213
Query: 235 YCDSIRGIGGQTALKLIR 252
Y + + G+G + ALKL +
Sbjct: 214 YDEGLSGVGKEAALKLFK 231
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 128/282 (45%), Gaps = 45/282 (15%)
Query: 126 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 185
+ + + ++ N+D K LL G+P +++P EAEAQC+ L + A+ S+D D +
Sbjct: 945 RLKNTNITINEEMNEDIKLLLNFFGIPYIQSPCEAEAQCSYLNNNNYCDAIISDDSDVIV 1004
Query: 186 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 245
F +++ ++K V +E I +L L D I++ +L GCDY + GIG
Sbjct: 1005 FSGKTIIKNFF---NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGIGIV 1061
Query: 246 TALKLIRQHGS------IETILENINRERYQ--------------------------IPE 273
AL++++ + ++ I+ N R YQ P+
Sbjct: 1062 NALEVVKAFPTFDDLKILKEIVSNPLRHLYQENDENNYSDEIKHFLNTHKNYKLNWIFPK 1121
Query: 274 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 333
++P +E + FK P+V D ++ + W P+ +I++L + +++ ++ I
Sbjct: 1122 NFPDREVYKCFKYPKVCKDIKKFE--WHPPNMNNIIHYLNKTTNISEEKIFNVLDPILKK 1179
Query: 334 KN---KSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKK 372
N +S Q R+E FF PV KRK ++ NKK
Sbjct: 1180 YNVKVRSYQLRIEDFF-PVIEK----KRKSVDDLINTIRNKK 1216
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL ++A P ++ E + G++IAID S+ +Y+ ++ G N +
Sbjct: 1 MGVKGLWSIVA---PIGVRVNP-EIFTGKRIAIDVSIWLYE--LIYGNNLKSSRNNNFDD 54
Query: 61 V-----------------------TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE 97
+ HL F R +LL ++PI++FDG PP+LKK+
Sbjct: 55 LGVFNDLWLDFSEQNSDLKLSNLKKGHLYFFFLRICKLLYYNIRPIFIFDGTPPELKKRT 114
Query: 98 LAKRYSKRADATDDLAEAVE 117
+ +R KR + + + + E
Sbjct: 115 IFQRNLKRKNNEEKVKKTAE 134
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 35/255 (13%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 714 QEKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELFKIGLVDGIVTDD 773
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSI 239
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 774 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 829
Query: 240 RGIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDW 275
+GIG A++++ + G++E ++L+ I + + +P+ +
Sbjct: 830 KGIGPVQAMEILAEFGNLEKFKEWFDKHAKTVADKTELTKLQKSLLDRIKKGKLFLPDSF 889
Query: 276 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA-IEKIKAAK 334
P + + + PEV +D+ + Q W PD + + +FL+ ++ V + + ++
Sbjct: 890 PDKVVEQAYISPEVDSDKTEFQ--WGVPDLDQIRSFLMYNLSWSQTEVDEVMVPLVQDMN 947
Query: 335 NKSSQGR---LESFF 346
K S+GR L FF
Sbjct: 948 KKKSEGRQSILNEFF 962
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L K++ A + + E+ +K+AIDAS+ IYQFL + L
Sbjct: 1 MGVHSLWKIIGPTA----RPVRLEALSRKKLAIDASIWIYQFLKAMRDKDGNSLP----- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R
Sbjct: 52 -SSHIIGFFRRICKLLYFGILPIFVFDGGVPVLKKQTINNRRQRR 95
>gi|390599160|gb|EIN08557.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 317
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 134/292 (45%), Gaps = 24/292 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFES-YFGRKIAIDASMSIYQFLIVVGRTGTEMLTNE-A 58
MGI GL LL KS+ K S Y G+ +A+D + +++ GT E A
Sbjct: 1 MGISGLLPLL-----KSITRTKHLSEYSGQTVAVDGYVWLHR--------GTYACAVELA 47
Query: 59 GEVTSH--LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
+ +H + R L G+ P VFDG P KK+ +R +R + +
Sbjct: 48 NDKPTHKYVDYAMGRVRLLRHYGITPYLVFDGGPLPAKKRTEVERAKRREENLAKGKQLA 107
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
G ++ + + VT Q + LK VP V AP EA+AQ A L ++G V A+
Sbjct: 108 AQGRHSQAREYFVKCIDVTPQMAYQLIKALKAENVPYVVAPYEADAQLAYLERTGAVSAI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI----LEELNLTMDQFIDLCILSG 232
+ED D L FG L L S+ V + + + L + QF + ILSG
Sbjct: 168 LTEDSDLLVFGCRHVLFKLDHVSATVSAVSRSDFGSLSSSDITLLGWSDVQFRAMAILSG 227
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 283
CDY SI G+G +TA L+R+H ++E + + E + +P+ Y +A RL
Sbjct: 228 CDYLPSIPGVGLKTAWALLRKHKNVENAVRALRLEGKKPVPDG--YLDAFRL 277
>gi|444315221|ref|XP_004178268.1| hypothetical protein TBLA_0A09650 [Tetrapisispora blattae CBS 6284]
gi|387511307|emb|CCH58749.1| hypothetical protein TBLA_0A09650 [Tetrapisispora blattae CBS 6284]
Length = 751
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 132/282 (46%), Gaps = 20/282 (7%)
Query: 1 MGIKGLT-KLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL +L P S++ Y G+ +AID Y +L R A
Sbjct: 1 MGISGLLPQLKTIQNPVSLRR-----YEGQTLAIDG----YAWL---HRAAFSCAYELAM 48
Query: 60 EVTS--HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
++ + +LQ + L ++P VFDG +KK KR +KR D+ +
Sbjct: 49 DIPTDRYLQFFIKKFSMLRTFNIEPYLVFDGDSLPVKKNTEKKRRTKRDDSKEIAIRLWN 108
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
AG K + + +++V +T + K + + AP EA++Q L K G V +
Sbjct: 109 AGEKRNAMDYFQKSVSITPEMAKCIIDYCKNNHIRYIVAPFEADSQMVYLEKKGIVQGII 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCD 234
SED D L FG R + L D + I + + K+ + LT + I + LSGCD
Sbjct: 169 SEDSDLLIFGCQRLITKLND-YAECIEICSLDFGKLTVKFPLGKLTPLEMIAMVCLSGCD 227
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
Y D I IG A+KLI+QH S++ IL N+ R ++ IPE++
Sbjct: 228 YTDGIPKIGLVNAMKLIQQHHSMDRILLNLRRAGKHNIPENF 269
>gi|371943829|gb|AEX61657.1| putative endonuclease of the XPG family [Megavirus courdo7]
gi|425701402|gb|AFX92564.1| putative endonuclease of the xpg family [Megavirus courdo11]
Length = 184
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 102/169 (60%), Gaps = 4/169 (2%)
Query: 1 MGIKGLTKLLADNAPKS-MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL KL+ + S MK +F + GR +A+D S+ I+Q +I + G +M TN+ G
Sbjct: 1 MGIKGLPKLIKEITNGSAMKSIQFGKFDGR-VAVDMSLLIHQTVIAMRSNGRDM-TNQKG 58
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
E+TSHL G+ + + L+ GM PI VFDG+ P++K + + R S++ A L ++
Sbjct: 59 ELTSHLYGILYKMLTFLQNGMTPICVFDGKAPEIKNKTVDIRRSRKDAAEKKLESLEDSE 118
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC 168
++E I+ F K+T +K+ + + LL LMG+P + +P EA+ C+ L
Sbjct: 119 DEEYIKNF-KQTFTPSKKDIQEAQILLDLMGIPYIVSPGEADVVCSWLA 166
>gi|71423277|ref|XP_812404.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70877180|gb|EAN90553.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 760
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 141/287 (49%), Gaps = 28/287 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM------- 53
MGIKGL ++ P ++ ++ G+++A+D + +++ ++ + GT
Sbjct: 1 MGIKGL---WSEVRP-VCRQSHLSNFRGQRVAVDMYVWLHRSILGSVQLGTRADAEAFIE 56
Query: 54 ---LTNEAGEVTS-------HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYS 103
+T+EA + S LQ + R +L G+ P+ VFDG P +K+ A+R
Sbjct: 57 SAEMTSEAVDAGSSVLLSNKFLQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQM 116
Query: 104 KRADATDDLAEAVEAGN------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 157
RA + + ++ G +++ + ++ + +T + ++LK + + AP
Sbjct: 117 LRAARLAEALQVLKQGGPSNPRARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAP 176
Query: 158 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 217
EA+AQ A LCK G V AV SED D + + P + L ++ + ++ +
Sbjct: 177 YEADAQLAYLCKEGYVQAVVSEDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFY 235
Query: 218 NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
L+ + F+ CILSGCDY S+R IG + A +L+ Q S+ +I+ ++
Sbjct: 236 GLSYESFLVGCILSGCDYLPSLRHIGVKKAFRLVAQATSVPSIMRSL 282
>gi|118398554|ref|XP_001031605.1| XPG I-region family protein [Tetrahymena thermophila]
gi|89285936|gb|EAR83942.1| XPG I-region family protein [Tetrahymena thermophila SB210]
Length = 648
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 144/286 (50%), Gaps = 21/286 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L+ +++ + G+K AIDA +Y+ G G N+ GE
Sbjct: 31 MGIQGLQNLIK----PALEFTSLHQFKGQKAAIDAMSFLYK-----GCYGYSYQLNK-GE 80
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T R +R+++ G++PI VFDG+ K + KR + E +E G
Sbjct: 81 QTREYMLFLLRIVRVVKLNGIEPIVVFDGRNLKAKDFTIKKREETKEKNLQKANELMEQG 140
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
NK + K+ +R ++V K+ D +L+ + + +P EA++Q A L KS Q +E
Sbjct: 141 NKNEAIKYYQRCLRVNKEMIYDTIDMLRANNIEYLISPYEADSQVAYLVKSQQADFAITE 200
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEF-EVAKILEE-LNLTMDQF----IDLCILSG 232
D D + + P+ + L +D S + + ++++ E + + E L + Q I +CI++G
Sbjct: 201 DSDLICYSCPKIVFKLSLDSSCQYLDLLKYCERSNLQSEALRCFLSQNELNRIYICIMAG 260
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDW 275
DY SI+GIG + A+ L + G+ + +++ + E R IPE++
Sbjct: 261 SDYFPSIQGIGIKKAIDLFYRCGTFKNVMQKLRLEPKIRPLIPENY 306
>gi|269861368|ref|XP_002650394.1| exonuclease I [Enterocytozoon bieneusi H348]
gi|220066165|gb|EED43662.1| exonuclease I [Enterocytozoon bieneusi H348]
Length = 327
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 30/293 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL L + +K++ + + G +IAID I+ R GT +
Sbjct: 1 MGITGLLPFLKN----IIKKKTIDEFHGSRIAIDGFSWIH-------RIGTHVSYELYNS 49
Query: 61 VTS--HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ + H++ + + L+ + PI++ DG D K R + + L A+E
Sbjct: 50 IKTDKHIKIFRSELVALIHKNIIPIFILDGDKLDSKLITYNHRQNLKEKYLSQLKIAIEN 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
+ KR V +T D + L+++ V + AP EA++Q A L K V + S
Sbjct: 110 HDNTRARDLMKRVVTITPDFIYDFIKELEILQVEYIIAPYEADSQMAYLNKINYVDHIMS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGC 233
ED D + +GA L I V ++ E+L+ F +D+CILSGC
Sbjct: 170 EDSDLICYGAKSVLF-----KYNGIFVDHYKS----EDLSKAYGSFFAKNILDICILSGC 220
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLF 284
DY +SI+GIG TA+KL ++ ++E + ++ ++ IP D+ + +A++ F
Sbjct: 221 DYINSIKGIGLITAVKLFQKEKTVEKFVTSLAHKK-TIPSDYIEQFYQAKKTF 272
>gi|224014124|ref|XP_002296725.1| exonuclease 1 [Thalassiosira pseudonana CCMP1335]
gi|220968580|gb|EED86926.1| exonuclease 1 [Thalassiosira pseudonana CCMP1335]
Length = 334
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 16/306 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQ--FLIVVGRTGTEMLTNEA 58
MG+KGL L + E+Y G +A+DA +++ F V ++ A
Sbjct: 1 MGVKGLLPCLQSIT----RSVSLENYRGLTVAVDAMSWLHKGVFACDVKALAKSQRSSAA 56
Query: 59 --GEVTSHLQGMFTRTIRLLEA--GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 114
G ++L++ GM+ + V DG KK+E ++R ++R A +
Sbjct: 57 RCGSAEMKCVQYAINKAQMLQSKFGMEILLVIDGDALPSKKEENSQRRAERDSAFEKAMT 116
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
A +G+ ++ ++ VT + + + KL+G+ + AP EA+AQ A L +G V
Sbjct: 117 AEASGDSRAARRYYAQSCSVTHKIRYELMKACKLVGIAFIVAPYEADAQMARLAHTGVVD 176
Query: 175 AVASEDMDSLTFGAPR--FLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILS 231
V +ED D L +G PR F ++I +M+ + L N T D F+ +CI+S
Sbjct: 177 LVITEDSDILVYGCPRACFKIDFDTCQGQEIQLMKNLGENESLSFKNWTHDMFVFMCIIS 236
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEV 289
GCDYC + GIG + A K++R H + I + R ++P D+ + A R F+ V
Sbjct: 237 GCDYCKGLPGIGIKLAHKIVRVHRTPSKIFSAL-RGAGRMPTDFEEKFWIAFRTFRHQRV 295
Query: 290 VTDEEQ 295
Q
Sbjct: 296 FCPSRQ 301
>gi|71413355|ref|XP_808820.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873103|gb|EAN86969.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 762
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 141/287 (49%), Gaps = 28/287 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM------- 53
MGIKGL ++ P ++ ++ G+++A+D + +++ ++ + GT
Sbjct: 1 MGIKGL---WSEVRP-VCRQSHLSNFRGQRVAVDMYVWLHRSILGSVQLGTRADAEAFIE 56
Query: 54 ---LTNEAGEVTS-------HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYS 103
+T+EA + S LQ + R +L G+ P+ VFDG P +K+ A+R
Sbjct: 57 CAEMTSEAVDAGSSVLLSNKFLQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQM 116
Query: 104 KRADATDDLAEAVEAGN------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 157
RA + + ++ G +++ + ++ + +T + ++LK + + AP
Sbjct: 117 LRAARLAEALQVLKQGGPSNPRARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAP 176
Query: 158 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 217
EA+AQ A LCK G V AV SED D + + P + L ++ + ++ +
Sbjct: 177 YEADAQLAYLCKEGYVQAVVSEDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFY 235
Query: 218 NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
L+ + F+ CILSGCDY S+R IG + A +L+ Q S+ +I+ ++
Sbjct: 236 GLSYESFLVGCILSGCDYLPSLRHIGVKKAFRLVAQATSVPSIMRSL 282
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 117/261 (44%), Gaps = 41/261 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q +L+L G+P + AP EAEAQCA L G V + ++D D FG R L+
Sbjct: 2494 ITQQMISQIMIMLRLFGIPYITAPMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLK 2553
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR- 252
++ + S V F ++ + EL L D+ I L L G DY D + G+G A++L++
Sbjct: 2554 NMFNQSKT---VECFLLSDLERELGLERDKLIRLAYLLGSDYTDGLPGVGPVVAMELLKE 2610
Query: 253 ---QHG------------SIETILENINR-----------ERYQIPEDWPYQEARRLFKE 286
Q G S + E+ N E Y +P++WP R +
Sbjct: 2611 FPGQDGLHKFKYWWQKVQSGKDTKEDTNSGFRKRFKKRFKELY-LPDEWPNPAVRDAYHH 2669
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI--KAAKNKSS-----Q 339
P V DE + KW PD + L NF SE G+ +V + I K K S Q
Sbjct: 2670 PTV--DESEEPFKWGLPDLDALRNFFNSELGWQQAKVDDLLLPIIRKMGKRGQSSVPNKQ 2727
Query: 340 GRLESFF-KPVANTSAPIKRK 359
G L F PV AP KR+
Sbjct: 2728 GTLLGLFDAPVGAGHAPRKRQ 2748
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MG+K L LL + E+ G+ +AID+S+ IYQF + GR
Sbjct: 1631 MGVKSLWSLLDPVG----RPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGR-------- 1678
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
G V +H+ G R +LL G+KP++VFDG P LK+ +A+R K++ A A+
Sbjct: 1679 --GLVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPVLKRATIAERKKKKSGAALSHAKVA 1736
Query: 117 E 117
E
Sbjct: 1737 E 1737
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P V AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 804 ECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 863
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 864 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLEE 919
Query: 260 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ N+ + + +P +P + EPEV +D
Sbjct: 920 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 979
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 346
Q W PD GL +FL+S G++ +R + I + + + +Q + SFF
Sbjct: 980 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITSFF 1031
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVHGLWTVVHPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G++P++VFDG P LK+Q +A
Sbjct: 53 --SHIVGFFRRICKLLYFGIQPVFVFDGGAPVLKRQTIA 89
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 30/260 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL +LL K ES G+ +A+DAS I++ + M
Sbjct: 1 MGVKGLWQLLEPVG----KPVTLESLQGKVLAVDAS-------ILMNQAIKGMRDGSGNP 49
Query: 61 V-TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
V +HL +F R +LL +KP++VFDG P LKK+ L + Y L E
Sbjct: 50 VPNAHLFVLFHRLCKLLFYRVKPVFVFDGGVPVLKKKTLVRAY---------LEEMQTNL 100
Query: 120 NKEDIEKFSKR------TVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 173
N+E S+R + +V+ + ++ + LL+L GVP + +P EAEAQCA L +GQ
Sbjct: 101 NREQRTLQSERARQARASAEVSTEMLNESQELLRLFGVPFLVSPMEAEAQCAFLDMTGQT 160
Query: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
++D D FG R +++ + + + I + L L+ + I L ++G
Sbjct: 161 DGTITDDSDVFLFGGRRVYKNIFNQNKHAEC---YTCEDIDKGLALSRSKMIKLAFVTGS 217
Query: 234 DYCDSIRGIGGQTALKLIRQ 253
DY + I+G+G +A++++ +
Sbjct: 218 DYTEGIQGLGAVSAMEVLHE 237
>gi|302678719|ref|XP_003029042.1| hypothetical protein SCHCODRAFT_17178 [Schizophyllum commune H4-8]
gi|300102731|gb|EFI94139.1| hypothetical protein SCHCODRAFT_17178 [Schizophyllum commune H4-8]
Length = 316
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 18/274 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKE-QKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL +L KS++ +K + G+ IA+D + +++ V E+ T G
Sbjct: 1 MGITGLLPVL-----KSIQTTRKLSDFAGQTIAVDGYVWLHRG---VYNCSVELAT---G 49
Query: 60 EVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T F +R+L G++P VFDG P KK +R KR ++
Sbjct: 50 KETHKYIDYFMHRVRMLRHNGVEPYIVFDGGPLPAKKGTENERRQKREESLARANMLAAQ 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + V VT + + L++ V V AP EA+AQ A L ++G V+A+ +
Sbjct: 110 GKHSQARDHYLKCVDVTPEMAYQVIKALRVENVKYVVAPYEADAQMAFLERTGAVHAILT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-----LEELNLTMDQFIDLCILSGC 233
ED D L FG L L + + + A + + + T QF + ILSGC
Sbjct: 170 EDSDLLVFGCKNVLFKLDHAQCTVVSISRSDFASVTACDGVSLVGWTDAQFRTMAILSGC 229
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
DY SI GIG +TA +R+H + E ++ I RE
Sbjct: 230 DYLPSIPGIGLKTAAVYVRKHKTAEQCVKAIARE 263
>gi|270016559|gb|EFA13005.1| hypothetical protein TcasGA2_TC001970 [Tribolium castaneum]
Length = 581
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 16/255 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L LA KS + + GR +AID+ +++ G G M + +
Sbjct: 1 MGVTQLLPFLA----KSTRPCHISEFRGRTVAIDSYCWLHR-----GARGCAMQLAKNED 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQ--PPDLKKQELAKRYSKRADATDDLAEAVEA 118
V S++ LL ++PI VFDG+ P +K +E KR + A E +
Sbjct: 52 VDSYVHYCMKYIKTLLSHDIRPIMVFDGRHLPAKMKTEE--KRRESKKLARKQGMECLRL 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G+ D KF +++ VT + R + + + + AP EA+AQ A L G V +
Sbjct: 110 GHTSDAYKFFAQSIDVTPEMALKLIRECRKLHIDCIVAPYEADAQLAYLNIKGFADCVIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRK--IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ED D L FG + + + MD + + + ++ +++ TM++F +CILSGCDY
Sbjct: 170 EDSDLLLFGCLKVM-YKMDSHGQGQLVEADKIHISMKMKQACFTMEKFRYMCILSGCDYL 228
Query: 237 DSIRGIGGQTALKLI 251
DS+ GIG + ALK I
Sbjct: 229 DSLPGIGLRKALKFI 243
>gi|388854880|emb|CCF51561.1| related to EXO1-exonuclease which interacts with Msh2p [Ustilago
hordei]
Length = 813
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 135/281 (48%), Gaps = 19/281 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL D + SY GR + ID + +++ R E++ +
Sbjct: 1 MGIQGLLPLLKDAS----LPIHISSYSGRTLGIDTYVWLHRGAYGCAR---EIVLGDPAP 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA--VEA 118
++ +R L G+KP VFDG K R SKR +++LA A +EA
Sbjct: 54 --RYISYALSRIGMLQHFGIKPYLVFDGDKLPAKTHTEDDRESKR---SENLARAQQLEA 108
Query: 119 -GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G + + V +T + ++LK +P + AP EA+AQ A L K G + AV
Sbjct: 109 EGKLQQARDLYAKCVDITPEMAYQLIKVLKEQAIPYLVAPYEADAQLAYLEKCGAIDAVL 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNLTMDQFIDLCILSGCDY 235
+ED D L FG L L D + + + + F + + T +F + ILSGCDY
Sbjct: 169 TEDSDLLVFGCNTVLFKL-DQAGNAVEIKQERFWTNRQITFSGWTAVEFRQMAILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
SI G+G + A +L+R+H +++ +L+ I E + +IP +
Sbjct: 228 LPSIVGMGLKNAHRLLRRHKTVDKVLQVIRLEGKMRIPPTY 268
>gi|401828054|ref|XP_003888319.1| putative exonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999591|gb|AFM99338.1| putative exonuclease [Encephalitozoon hellem ATCC 50504]
Length = 366
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 168/351 (47%), Gaps = 37/351 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL ++A PK +K SY ++I ID +YQ L V E+ +
Sbjct: 1 MGISGLLPIVA---PKLVKRH-ISSYKHQRIGIDGHAWLYQILSFVSE---EIFFKVPTK 53
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H+ MF +R+LE G+ P+ V DG K++ KR K+ + +
Sbjct: 54 --KHI-AMFEEKVRVLENYGITPVVVLDGDTLPSKEETNRKRQVKKERNRKEAEHWLMKN 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E + F ++ + VT++ D ++L+ + V + +P E++AQ L + G + + +E
Sbjct: 111 DPEKAKGFMRQCITVTREIVSDIVKMLERINVEYIISPYESDAQLCYLQRIGYIDCILTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ-FIDLCILSGCDYCDS 238
D D + +G+ R L + D + V EF + E ++ +D+ ILSGCDY S
Sbjct: 171 DSDLIPYGSNRIL-YKFDCTF----VQEFTRDCLTEARGKDFEENILDISILSGCDYLAS 225
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDEEQL 296
I+GIG TA KL+ + ++E ++E + R R +P + + +A++ F +VV D Q
Sbjct: 226 IQGIGVVTAHKLLSREKTVEGVIEYL-RHRKPVPSGYLDDFLKAKKTFLH-QVVYDPIQQ 283
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
+ ++ E L +FL + +K + + G LESFFK
Sbjct: 284 KRRYLRDLREKL-DFLGT---------------LKEEEYRIEDGPLESFFK 318
>gi|403348528|gb|EJY73701.1| XPG family protein [Oxytricha trifallax]
Length = 734
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 147/292 (50%), Gaps = 32/292 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL +LL ++++ + G+ ++D +Y+ G + E G
Sbjct: 1 MGVQGLLQLL----KPALRDCNLSQFRGQTASVDIMTWLYK--------GAYAYSYELG- 47
Query: 61 VTSHLQGMFTRTIRLLE----AGMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLA-E 114
+ G +++L+ G+KPI VFDGQ LK +E ++ S +LA +
Sbjct: 48 LDQQTLGFLAYPLKMLKLVQTYGIKPICVFDGQ--HLKAKEATEKVRSHNKQVNKELAMQ 105
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
E GN+ED K+ R++ + + D +LK + + +V AP EA++Q A + K G
Sbjct: 106 KAEDGNEEDARKYFMRSLILRSKMIDLFIDILKKLEIEMVVAPYEADSQIAYMVKEGIAD 165
Query: 175 AVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNL------TMDQFIDL 227
SED D + +G P+ L L + + + +F+ + + L + +QF+ +
Sbjct: 166 FAISEDSDLIAYGCPKLLMKLNFNGYCKVFSINDFKANNQITDQTLAYLQKTSREQFVQI 225
Query: 228 CILSGCDYCDSIRGIGGQTALKL-IRQHGSIETILENINRERY---QIPEDW 275
CI++GC+Y SI+ +G + A+KL ++ +G +E +LE++ + ++PE +
Sbjct: 226 CIMAGCEYLPSIQQVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGY 277
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 41/316 (12%)
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
QEL + R D ++L + + A K+D + +VT+ +C++LL L G+P V
Sbjct: 904 QELTNNTATRVDFDEELKQ-LRAQQKKD----RRDADEVTQTMIAECQQLLTLFGLPYVT 958
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL- 214
AP EAEAQCA L G V + ++D D+ FG R +++ + + +E +A+ L
Sbjct: 959 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAK----FVECYLAQDLA 1014
Query: 215 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI-------------- 260
E +LT ++ I + L G DY I GIG TAL+++ + ++E
Sbjct: 1015 SEFSLTREKMIAIAQLLGSDYTTGIPGIGPVTALEILSEFQTLEAFRAWWDGVQSGQIRK 1074
Query: 261 ---LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309
+N R+R++ +P ++P + PEV +D E Q W PD L
Sbjct: 1075 DEDAKNPFRKRFRKNQGTKLFLPPNFPDPRVAEAYLHPEVDSDPEPFQ--WGVPDLASLR 1132
Query: 310 NFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTP 365
FL S+ G++ ++ + I + + + +Q + FF+ A R
Sbjct: 1133 TFLSSQIGWSWEKTDEVLVPVIRDMNRREKEGTQANITRFFEGAVGAGAFAPRVRGNAAG 1192
Query: 366 KATTNKKSKAGGGGGR 381
+ KK G G R
Sbjct: 1193 SGPSGKKKGTGATGKR 1208
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L +L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTALWTVLQPCA----RPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+KP++VFDG P LK+Q ++ R S+R +D
Sbjct: 53 --SHIVGFFRRICKLLFIGIKPVFVFDGGAPALKRQTISNRKSRREGRRED 101
>gi|255714619|ref|XP_002553591.1| KLTH0E02398p [Lachancea thermotolerans]
gi|238934973|emb|CAR23154.1| KLTH0E02398p [Lachancea thermotolerans CBS 6340]
Length = 665
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 145/315 (46%), Gaps = 21/315 (6%)
Query: 1 MGIKGLT-KLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL +L P ++ Y G+ +AID Y +L + E L G
Sbjct: 1 MGIQGLLPQLKPIQQPITLIR-----YDGQTLAIDG----YAWLHRAAHSCAEELA--LG 49
Query: 60 EVTSHLQGMFTRTIRLLEA--GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
TS F + + +L + P VFDG +KK KR KRA+ + +
Sbjct: 50 RPTSKYLEFFIKRLNMLRNRFNINPYLVFDGDAIMVKKDTELKRKQKRAENKERALALWK 109
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
AG+K + ++ V VT + ++ + + AP EA+AQ L K G V+ +
Sbjct: 110 AGDKRQAYDYFQKCVDVTPEMAKCVIEYCQVQDIKYIVAPFEADAQMVYLEKKGLVHGII 169
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM---DQFIDLCILSGCD 234
SED D L FG + + L D I + + ++ + L+ ++ + LSGCD
Sbjct: 170 SEDSDLLIFGCRKLITKLTD-HGEGIEICRDDFPRLPSKFPLSQLCPEETRAMVCLSGCD 228
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVT 291
Y I IG TA+KL+R+H +++ I++NI RE ++ +P+++ YQ A F+ V
Sbjct: 229 YTAGIPKIGLLTAMKLVRKHKTMDNIIKNIQREGKFVVPKEFLEEYQLASFAFQFQRVYC 288
Query: 292 DEEQLQIKWSAPDEE 306
E + S EE
Sbjct: 289 PENGMMTTLSEIPEE 303
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 802 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 861
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 862 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLED 917
Query: 260 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ N+ + + +P +P + EPEV +D
Sbjct: 918 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 977
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 346
Q W PD GL +FL+S G++ +R + + + N+ +Q + SFF
Sbjct: 978 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRDQEGTQSNITSFF 1029
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVQGLWTVVHPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G++P++VFDG P LK+Q +A
Sbjct: 53 --SHIVGFFRRICKLLYFGIQPVFVFDGGAPVLKRQTIA 89
>gi|91094765|ref|XP_967471.1| PREDICTED: similar to exonuclease [Tribolium castaneum]
Length = 563
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 16/255 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L LA KS + + GR +AID+ +++ G G M + +
Sbjct: 1 MGVTQLLPFLA----KSTRPCHISEFRGRTVAIDSYCWLHR-----GARGCAMQLAKNED 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQ--PPDLKKQELAKRYSKRADATDDLAEAVEA 118
V S++ LL ++PI VFDG+ P +K +E KR + A E +
Sbjct: 52 VDSYVHYCMKYIKTLLSHDIRPIMVFDGRHLPAKMKTEE--KRRESKKLARKQGMECLRL 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G+ D KF +++ VT + R + + + + AP EA+AQ A L G V +
Sbjct: 110 GHTSDAYKFFAQSIDVTPEMALKLIRECRKLHIDCIVAPYEADAQLAYLNIKGFADCVIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRK--IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ED D L FG + + + MD + + + ++ +++ TM++F +CILSGCDY
Sbjct: 170 EDSDLLLFGCLKVM-YKMDSHGQGQLVEADKIHISMKMKQACFTMEKFRYMCILSGCDYL 228
Query: 237 DSIRGIGGQTALKLI 251
DS+ GIG + ALK I
Sbjct: 229 DSLPGIGLRKALKFI 243
>gi|15079080|ref|NP_149832.1| 369L [Invertebrate iridescent virus 6]
gi|82012056|sp|Q91FF5.1|VF369_IIV6 RecName: Full=Probable RAD2-like endonuclease 369L
gi|15042449|gb|AAK82229.1|AF303741_370 369L [Invertebrate iridescent virus 6]
Length = 415
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 135/309 (43%), Gaps = 55/309 (17%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTE---MLTNE 57
MGIK LTK + + ++ + +KIAID M +Y++ + E + N
Sbjct: 1 MGIKNLTKFIKEKCQEAYVTENINELSFKKIAIDTPMYMYKYKSMNAAKMVENNGIYYNP 60
Query: 58 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPP---------------DLKKQELAKRY 102
G + S + +++ L + + PI++ +G P D+KK+ L+
Sbjct: 61 DGWLWSFIYFIYS----LRKHDIHPIFILEGGYPEEKNKTRMARKKDREDVKKKTLSLEE 116
Query: 103 SKRADATD----------DLAE---AVEAGNKEDIEKFSKRTVK--VTKQHNDDC----- 142
S + AT DL E + N E F TVK V ++H D
Sbjct: 117 SISSYATSLRLRPEDIPQDLKEEWNKIAKKNNLPFEDFDFETVKDHVKQRHRYDIRITNR 176
Query: 143 -----KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 197
K LLK+M P ++AP EAEA CA L K ++ +AS D D L +G + D
Sbjct: 177 DYEKLKILLKIMNTPFIQAPMEAEAFCAYLYKKKIIHGIASNDSDILAYGCNLIVDFEFD 236
Query: 198 ------PSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
KI + ++ +L +L+L +F+D CI+ G DY D+I IG + +LI
Sbjct: 237 VKIDEETKISKITYINYDY--LLNKLDLQSSEFLDFCIMCGTDYNDNIYRIGAVKSYELI 294
Query: 252 RQHGSIETI 260
+ IE +
Sbjct: 295 KVQKCIENV 303
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 772 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 831
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 832 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLED 887
Query: 260 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ N+ + + +P +P + EPEV +D
Sbjct: 888 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 947
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 346
Q W PD GL +FL+S G++ +R + + + N+ +Q + SFF
Sbjct: 948 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRDQEGTQSNITSFF 999
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVQGLWTVVHPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G++P++VFDG P LK+Q +A
Sbjct: 53 --SHIVGFFRRICKLLYFGIQPVFVFDGGAPVLKRQTIA 89
>gi|407867753|gb|EKG08658.1| hypothetical protein TCSYLVIO_000184 [Trypanosoma cruzi]
Length = 761
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 140/287 (48%), Gaps = 28/287 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM------- 53
MGIKGL ++ P ++ ++ G+++A+D + +++ ++ + GT
Sbjct: 1 MGIKGL---WSEVRP-VCRQSHLSNFRGQRVAVDMYVWLHRSILGSVQLGTRADAEAFIE 56
Query: 54 ---LTNEAGEVTS-------HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYS 103
+T+EA + S LQ + R +L G+ P+ VFDG P +K+ A+R
Sbjct: 57 CAEMTSEAVDAGSSVLLSNKFLQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQM 116
Query: 104 KRADATDDLAEAVEAGN------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 157
RA + + ++ G +++ + ++ + +T + ++LK + + AP
Sbjct: 117 LRAARLAEALQVLKQGGPSNPRARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAP 176
Query: 158 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 217
EA+AQ A LCK G V AV SED D + + P + L ++ + ++ +
Sbjct: 177 YEADAQLAYLCKEGYVQAVVSEDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFY 235
Query: 218 NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
L+ + F+ CILSGCDY S+R IG + A +L+ Q S+ I+ ++
Sbjct: 236 GLSYESFLVGCILSGCDYLPSLRHIGVKKAFRLVAQATSVPIIMRSL 282
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 41/261 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q +L+L G+P + AP EAEAQCAAL G V + ++D D FG R L+
Sbjct: 801 ITQQMISQIMIMLRLFGIPYITAPMEAEAQCAALLSLGLVDGIITDDSDVFLFGGGRVLK 860
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F + EL L D+ + L L G DY + + G+G A++L+ +
Sbjct: 861 NMFNQSKT---VECFLTTDLERELGLDRDKLVRLAYLLGSDYTEGLPGVGPVVAMELLSE 917
Query: 254 H---------------------------GSIETILENINRERYQIPEDWPYQEARRLFKE 286
S + ++ Y +PE WP R +
Sbjct: 918 FPGHDGLHKFKQWWMKVQSGRDKAEESASSFRKRFKKKFKDLYLLPE-WPNPAVRDAYYH 976
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------Q 339
P V DE KW PD + L F SE G++ +V + I NK S Q
Sbjct: 977 PTV--DESTEPFKWGFPDLDALRGFFNSELGWDQTKVDDLLLPIIRKMNKRSQNASTNAQ 1034
Query: 340 GRLESFFK-PVANTSAPIKRK 359
G L FF P+ +AP KR+
Sbjct: 1035 GNLSGFFDIPLGANAAPRKRQ 1055
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 31 IAIDASMSIYQFLIVV----GRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVF 86
+AID+S+ IYQF + GR G V +H+ G R +LL G+KP++VF
Sbjct: 1 MAIDSSIWIYQFQATMRDKEGR----------GLVNAHVLGFLRRICKLLFYGIKPVFVF 50
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
DG P LK +A+R K++ A A E
Sbjct: 51 DGGAPALKMATIAERKKKKSGAAASHARVAE 81
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 30/277 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ L +LA ES G+ +A+D SM + + +G + +T G
Sbjct: 1 MGVQQLWTILAPVKTHCA----LESLQGKTLAVDLSMWVCEA------SGVKAMT---GA 47
Query: 61 VT-SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
VT HL+ +F R L + G+ I+V DG+PP+LK Q + KR R + + G
Sbjct: 48 VTRPHLRNLFFRVSHLTKMGVGLIFVVDGEPPELKFQTMMKRNQDRFWGS-------KTG 100
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K+ + K K K +C LL +G+P V++ EAEA CA L + V ++
Sbjct: 101 QKKGLGKPKKMKRSHFKAILKECILLLDGLGIPHVQSKGEAEAFCALLNRESLVDGCLTD 160
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
D D+ +GA R+L +K P ++ ++++ I E+L L ++ + L +L GCDYC
Sbjct: 161 DGDAFLYGARTVYRNLT--LDKKDPHVDCYQMSDIEEKLLLDRNKLVGLALLLGCDYCPK 218
Query: 238 SIRGIGGQTALKLIRQHGSIET--ILENINRERYQIP 272
+ G+G + A++++ ++ET +LE R + P
Sbjct: 219 GVPGVGKELAVRVMT---ALETCDVLERFKVWRSETP 252
>gi|301103478|ref|XP_002900825.1| exonuclease 1, putative [Phytophthora infestans T30-4]
gi|262101580|gb|EEY59632.1| exonuclease 1, putative [Phytophthora infestans T30-4]
Length = 401
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 166/394 (42%), Gaps = 38/394 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQK-FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL +L KS+ E K E+Y G+ +AID +++ + E+ +A
Sbjct: 1 MGISGLLPVL-----KSITETKNIEAYRGQTLAIDGYCWLHR---AIYSCSQEICLGQAT 52
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ ++ R LL G+ P VFDG P +KK +R R + +
Sbjct: 53 D--KYVTYFMDRITALLHNGVTPYVVFDGGPLPMKKGTEEERRKSRQKNRELGVQHYNNK 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ K R V+ + LK V V AP EA+AQ A L K+G V +E
Sbjct: 111 RFGEARKCFVRAADVSPYMAHRVIQHLKAQNVAYVVAPYEADAQLAYLVKNGLADGVITE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FG L + D +++I + K + T F+++CI SGCDY S
Sbjct: 171 DSDCLPFGCQTVLFKMDRDNIAQEIQTANLKKNKGMSFHMFTEQMFLEMCIFSGCDYLPS 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWP--YQEARRLFKEPEVVTDEEQ 295
I G G + A ++QHGS I+ + E + +IP + +++A F+ V +
Sbjct: 231 IPGFGLKKAYTAMKQHGSFAKIVRALRLEGKVRIPATYEEDFRKAVLTFRHQRVYCPTK- 289
Query: 296 LQIKWSAPDEEGLINFLVSENGFN------SDRVTKAIEK------------IKAAKNKS 337
K P N L ++ + S V KAI + +KA ++S
Sbjct: 290 ---KELVPLTPVPANLLKTDPAMDFVGPMLSSDVAKAIAEGDMDPITMTPFPVKAPVSRS 346
Query: 338 SQGRLESFFKPVANTSAPIKRKEPENTPKATTNK 371
Q ++ SFF + +A + P P ++ K
Sbjct: 347 IQPKVTSFFHASESAAAAV-FNAPRTKPTSSKRK 379
>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
Length = 916
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 588 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 647
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 648 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLED 703
Query: 260 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ N+ + + +P +P + EPEV +D
Sbjct: 704 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 763
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 346
Q W PD GL +FL+S G++ +R + + + N+ +Q + SFF
Sbjct: 764 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRDQEGTQSNITSFF 815
>gi|356528364|ref|XP_003532774.1| PREDICTED: exonuclease 1-like [Glycine max]
Length = 743
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 29/288 (10%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+G LL P +K+ K G +A+D +++ + TE+ +
Sbjct: 1 MGIQGFLPLLKSIMVPVHIKDLK-----GCSVAVDTYSWLHKGAL---SCSTELC--KGM 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
T H++ R L G+KPI VFDG +K ++ KR R D+LA AVE
Sbjct: 51 PTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARAR---KDNLARAVEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + ++ V ++ Q + ++LK + + AP EA+AQ L SGQV AV
Sbjct: 108 SDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAV 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG PR + MD + + +F+ + + + L+ + F +++CILS
Sbjct: 168 ITEDSDLIPFGCPRII-FKMDKFGQGV---QFQYSMLQKNKELSFEGFNRQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE 279
GCDY S+ G+G + A I++ S + +L+++ +P P+ E
Sbjct: 224 GCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP---PFYE 268
>gi|449544360|gb|EMD35333.1| hypothetical protein CERSUDRAFT_66521 [Ceriporiopsis subvermispora
B]
Length = 320
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 139/295 (47%), Gaps = 27/295 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNE--A 58
MGI GL LL D + + + G+ +A+DA + +++ GT E
Sbjct: 1 MGISGLLPLLKD----IQETRPLSDFAGQTLAVDAYVWLHR--------GTYSCAYELAT 48
Query: 59 GEVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G+ T+ +RLL ++P VFDG P KK ++R ++R D A A+
Sbjct: 49 GKRTNKYVDYAMHRVRLLRHYNIEPYIVFDGGPLPAKKGTESERKARR-DENIARANALA 107
Query: 118 A-GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
A G ++ + + VT Q + L+ VP V AP EA+AQ A L ++G V +
Sbjct: 108 AQGKHSQAREYYVKCIDVTPQMAYQFIKALRAECVPYVVAPYEADAQLAYLERTGVVDGI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE-------LNLTMDQFIDLCI 229
+ED D L FG L L +S V + A I + + QF + I
Sbjct: 168 ITEDSDLLVFGCKTVLFKLDVAASTVTRVSRADFASITSGSSSGISLVGWSDVQFRAMAI 227
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 283
LSGCDY SI GIG +TA L+R+H ++E ++ +N E + ++P Y EA R+
Sbjct: 228 LSGCDYLPSIPGIGLKTAWSLLRKHKTVENVVRALNLEGKKKVPHK--YLEAFRM 280
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 35/255 (13%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 712 QEKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDD 771
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSI 239
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 772 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 827
Query: 240 RGIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDW 275
+GIG A++++ + G++E ++L+ I + + +P+ +
Sbjct: 828 KGIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSF 887
Query: 276 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 331
P + + + PEV +D+ + Q W PD + + +FL+ + V + ++ +
Sbjct: 888 PDKVVEQAYISPEVDSDKTEFQ--WGVPDLDQIRSFLMYNLSWTQTEVDEVMVPLVQDMN 945
Query: 332 AAKNKSSQGRLESFF 346
K + Q + FF
Sbjct: 946 KKKLEGRQSTISEFF 960
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L K++ A + + E+ +K+AIDAS+ IYQFL + L
Sbjct: 1 MGVHSLWKIVGPTA----RPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLP----- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R
Sbjct: 52 -SSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRR 95
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 38/259 (14%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q LL+L G+P + AP EAEAQCA L G V + ++D D FG R +
Sbjct: 7 ITQQMISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFK 66
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL L I L L G DY + + G+G A++L+++
Sbjct: 67 NMFNQSKT---VECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKE 123
Query: 254 -------HGSIETILE-NINRERYQ------------------IPEDWPYQEARRLFKEP 287
H + L+ R++ + +P++WP R + P
Sbjct: 124 FPGEDGLHKFKDWWLKVQSGRDKDEENKSKFRKRFKKKYKDLYLPQEWPNAAVRDAYYHP 183
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV-------TKAIEKIKAAKNKSSQG 340
V + EE KW PD + L +FL E G+ +V + + K K A + + QG
Sbjct: 184 TVDSSEEPF--KWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQATSLNRQG 241
Query: 341 RLESFFKPVANTSAPIKRK 359
L +F + AP KR+
Sbjct: 242 NLNNFLDVAPGSHAPRKRQ 260
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 31/218 (14%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 712 QEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDD 771
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSI 239
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 772 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 827
Query: 240 RGIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDW 275
+GIG A++++ + G++E ++L+ I + + +P+ +
Sbjct: 828 KGIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSF 887
Query: 276 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 313
P + + + PEV +D+ + Q W PD + + +FL+
Sbjct: 888 PDKVVEQAYMSPEVDSDKTEFQ--WGVPDLDQIRSFLM 923
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L K++ A + + E+ +K+AIDAS+ IYQFL + L
Sbjct: 1 MGVHSLWKIVGPTA----RPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLP----- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R
Sbjct: 52 -SSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRR 95
>gi|145324070|ref|NP_001077624.1| exonuclease 1 [Arabidopsis thaliana]
gi|166232400|sp|Q8L6Z7.2|EXO1_ARATH RecName: Full=Exonuclease 1
gi|332192991|gb|AEE31112.1| exonuclease 1 [Arabidopsis thaliana]
Length = 735
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 41/336 (12%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL P +KE + G +A+D +++ + R + L +
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELE-----GCIVAVDTYSWLHKGALSCSRELCKGLPTK-- 53
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
H+Q R L G+KPI VFDG P +K ++ KR R ++LA A+E
Sbjct: 54 ---RHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + + V ++ + ++L+ V V AP EA+AQ A L + QV A+
Sbjct: 108 ANGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG R + MD + EF+ +K+ + +L++ F +++CILS
Sbjct: 168 ITEDSDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEV 289
GCDY S+ G+G + A LI + S + +++++ +P + ++ A FK V
Sbjct: 224 GCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRV 283
Query: 290 VTDEEQLQIKWSAPDEEGLINFL-VSEN-GFNSDRV 323
P+ E +I+ +S+N G +SD V
Sbjct: 284 YD-----------PNAEDIIHLCDISDNLGEDSDFV 308
>gi|255732117|ref|XP_002550982.1| hypothetical protein CTRG_05280 [Candida tropicalis MYA-3404]
gi|240131268|gb|EER30828.1| hypothetical protein CTRG_05280 [Candida tropicalis MYA-3404]
Length = 678
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 125/267 (46%), Gaps = 19/267 (7%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ GL + L D P S+ E Y G+ +AID +++ ++ + E L G
Sbjct: 1 MGVHGLLQCLKDIQDPGSL-----ERYRGKTLAIDTYGWLHRAIV----SCAEELC--LG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T + I +L G+ P +VFDG KQE K KR +LAE A
Sbjct: 50 KPTRNYITYVVNKINMLRYFGITPYFVFDGAALP-TKQETNKERQKRRQEAKELAEKYLA 108
Query: 119 GNKEDI--EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
N + ++F K VT Q L +MG+ + AP EA+ Q L K G V +
Sbjct: 109 ANNPQLAGKQFMK-AAYVTSQMAKSIMSELDIMGIKYIVAPYEADPQMVYLEKIGLVDGI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSS-RKIPVMEFEVAKILEELN-LTMDQFIDLCILSGCD 234
SED D L FG + + L D S +I F + + LN L+ DQ + +LSGCD
Sbjct: 168 LSEDSDLLIFGCKKLITKLKDDGSCYEINRENFGKVRQIPYLNQLSNDQLRLVAMLSGCD 227
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETIL 261
Y I GIG A +L R+H ++E IL
Sbjct: 228 YTKGIPGIGLTKAFQLTRKHNNLEKIL 254
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 37/254 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT +C+ LL+L G+P + AP EAEAQC+ L G V + ++D D+ FG R
Sbjct: 901 EVTMVMVSECQALLRLFGIPYITAPMEAEAQCSELVSLGLVDGIVTDDSDTFLFGGTRVY 960
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKL-- 250
+++ + + V F A + +E++L+ ++ I L L G DY D + G+G TA+++
Sbjct: 961 KNMFNGNKF---VECFLAADLEKEMSLSREKLISLAQLLGSDYTDGLPGVGPVTAMEILS 1017
Query: 251 -----------------IRQHG-SIETILENINRERYQ--------IPEDWPYQEARRLF 284
++ HG S E + R +++ +P +P +
Sbjct: 1018 EFPGPQGLEEFRTWWDDVQMHGRSREADAGSPFRRKFRKSQGTKLFLPTGFPNAAVAAAY 1077
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQG 340
K+PEV + E Q W PD +GL +FL+S G++ DR + + + N+ +Q
Sbjct: 1078 KKPEVDSSTEPFQ--WGVPDLDGLRSFLMSTIGWSQDRTDEVLVPVIRDMNRREAEGTQS 1135
Query: 341 RLESFFKPVANTSA 354
+ FF + A
Sbjct: 1136 NITRFFSGAVGSGA 1149
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++L A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWQVLQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SH+ G F R +LL G+ P++VFDG P LK+ L
Sbjct: 53 --SHVVGFFRRVCKLLWFGILPVFVFDGGAPALKRSTL 88
>gi|326915480|ref|XP_003204045.1| PREDICTED: exonuclease 1-like [Meleagris gallopavo]
Length = 778
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 21/258 (8%)
Query: 1 MGIKGLTKLLADNA-PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGT-EMLTNEA 58
MGI+GL + + + A P +K+ Y G+ +A+DA +++ G G E L
Sbjct: 1 MGIQGLLQFIKEAAEPGHVKK-----YRGQAVAVDAYCWLHK-----GSYGCAEKLAR-- 48
Query: 59 GEVTSHLQGMFTRTI-RLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAV 116
GE T H + + LL G+KPI VFDG P K+ E A+R ++A+
Sbjct: 49 GEPTDHYVAFCMKLVDMLLSFGIKPILVFDGCTLPSKKEVEKARREKRQANLLKGKQLFR 108
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E E + F+ R+V VT + + + GV + AP EA+AQ A L K+G V A+
Sbjct: 109 EGKFSEARDCFA-RSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGMVQAI 167
Query: 177 ASEDMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCD 234
+ED D L FG + FL+ +D + + + + + N+ T ++F +CILSGCD
Sbjct: 168 ITEDSDLLAFGCKKVFLK--IDKFGNGLEIDQARLGNCKQLGNVFTEEKFRYMCILSGCD 225
Query: 235 YCDSIRGIGGQTALKLIR 252
Y SI GIG A KL++
Sbjct: 226 YLSSIHGIGLAKACKLLK 243
>gi|12323539|gb|AAG51751.1|AC068667_30 exonuclease, putative; 92014-93872 [Arabidopsis thaliana]
Length = 317
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 160/336 (47%), Gaps = 41/336 (12%)
Query: 1 MGIKGLTKLL-ADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL + P +KE + G +A+D +++ + R + L +
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELE-----GCIVAVDTYSWLHKGALSCSRELCKGLPTK-- 53
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
H+Q R L G+KPI VFDG P +K ++ KR R ++LA A+E
Sbjct: 54 ---RHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + + V ++ + ++L+ V V AP EA+AQ A L + QV A+
Sbjct: 108 ANGNSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG R + MD + EF+ +K+ + +L++ F +++CILS
Sbjct: 168 ITEDSDLIPFGCLRIIFK-MDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEV 289
GCDY S+ G+G + A LI + S + +++++ +P + ++ A FK V
Sbjct: 224 GCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRV 283
Query: 290 VTDEEQLQIKWSAPDEEGLINFL-VSEN-GFNSDRV 323
P+ E +I+ +S+N G +SD V
Sbjct: 284 YD-----------PNAEDIIHLCDISDNLGEDSDFV 308
>gi|145493760|ref|XP_001432875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399990|emb|CAK65478.1| unnamed protein product [Paramecium tetraurelia]
Length = 553
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 35/295 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+ L L ++ E+ Y G+ AIDA +Y+ G N+ +
Sbjct: 1 MGIENLLNFL----KPALVERCITFYRGKTAAIDAMSWLYR-----GCYSCAHELNQDIK 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA--EAVEA 118
+L + I L E + PI +FDG+ +L+ +E ++ K+ + L E E+
Sbjct: 52 TNDYLYYVQKMLIMLKEYEITPILIFDGR--NLRAKEKTEQMRKQIKQQNLLKAKELQES 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN E+ +++ +R +K+ KQ +L+ + V + AP EA+AQ A +C SGQ +
Sbjct: 110 GNTEEAKRYYQRCLKIRKQMMYTTFDVLRELEVQYIIAPYEADAQIAHMCLSGQCDFAIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE---------------LNLTMDQ 223
ED D + + P + L + E E+ K+ E L +Q
Sbjct: 170 EDSDLICYQCPLIVFKLQSNGA----CFELELQKLRESRQNRAHIKSDDIRQFLAFKNEQ 225
Query: 224 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERY---QIPEDW 275
ID+CI+SGCDY SIRG+G + A+ + ++ I + + + + +IPE++
Sbjct: 226 LIDVCIMSGCDYVPSIRGMGIKKAIDYMSKYDDISNTISKLKKAKQFNGKIPEEY 280
>gi|356512555|ref|XP_003524984.1| PREDICTED: exonuclease 1-like [Glycine max]
Length = 481
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 29/288 (10%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+G LL P +K+ K G +A+D +++ + TE+ +
Sbjct: 1 MGIQGFLPLLKSIMVPIHIKDLK-----GCSVAVDTYSWLHKGAL---SCSTELC--KGM 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
T H++ R L G+KPI VFDG +K ++ KR R D+LA AVE
Sbjct: 51 PTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARAR---KDNLARAVEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + ++ V ++ Q + ++LK + + AP EA+AQ L SGQV AV
Sbjct: 108 SDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAV 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG PR + MD + + +F+ + + + L+ + F +++CILS
Sbjct: 168 ITEDSDLIPFGCPRIIFK-MDKFGQGV---QFQDSMLQKNKELSFEGFNRQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE 279
GCDY S+ G+G + A I++ S + +L+++ +P P+ E
Sbjct: 224 GCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP---PFYE 268
>gi|157112576|ref|XP_001657573.1| exonuclease [Aedes aegypti]
gi|108878018|gb|EAT42243.1| AAEL006209-PA [Aedes aegypti]
Length = 770
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 165/397 (41%), Gaps = 27/397 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL L K+ G+ +AID+ +++ ++ E +
Sbjct: 1 MGITGLIPFLE----KASSRCHLRELRGQCVAIDSYCWLHKGAFACA---DKLARGEPTD 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
V H+Q LL +KPI VFDG+ K AKR R ++ AE + G
Sbjct: 54 V--HIQYCLKYVNMLLSHDIKPILVFDGRHLPAKAMTEAKRRESRDNSRKRAAELLRVGK 111
Query: 121 KEDIEKFSKRTVKVTK----QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
E+ + + +R V +T Q +C+R V V AP EA+AQ A L + G AV
Sbjct: 112 TEEAKSYLRRCVDITHEMALQLIQECRR----RNVDCVVAPYEADAQLAYLNRKGIAQAV 167
Query: 177 ASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
+ED D + FG + L L + + I + +A +E T D+F +CILSGCDY
Sbjct: 168 ITEDSDLMLFGCSKVLFKLDLTGTGLMIEAEKLYLAMGCKEEKYTFDKFRYMCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQ------HGSIETILENINRERYQIPEDWP--YQEARRLFKEP 287
+S+ GIG A K + ++ I +N + ++ E + + +A FK
Sbjct: 228 LESLPGIGLAKAKKFVLTTEDTDIRRALSKIPAYLNMRQLEVSEQYKEEFMKADATFKHM 287
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347
V E+ Q + + P + G L G D T A+E N S RL+++
Sbjct: 288 VVFDPVERKQARLNEPSDMGTHPDLCCNAGNFLDDET-ALELALGNLNPFSMKRLDNWHP 346
Query: 348 PVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
+ A R N + G GRK K
Sbjct: 347 DSPDCQATGGRTSNWNQTAVAKHPSIWRGSYEGRKIK 383
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
Length = 1324
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L K G V + ++D D FG R +++ + +
Sbjct: 977 ECQALLRLFGLPYITAPMEAEAQCAELVKLGLVDGIVTDDSDCFLFGGTRIYKNMFNQAK 1036
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E + LE E +LT + I + L G DY + + G+G TAL++I + GS++
Sbjct: 1037 ----FVECYLTSDLEKEFDLTRGKLISVAHLLGSDYTEGLPGVGPVTALEIISEFGSLDN 1092
Query: 260 I--------LENI----------------NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 295
+ I N + +P +P ++EPEV +D +
Sbjct: 1093 FKTWWSGVQMNQIPKSEDADKPFRKKFRRNATKIFLPPSFPDARVDIAYQEPEVDSDAQA 1152
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 346
Q W PD + L +FL++ G++ +R + + + N+ +Q + +FF
Sbjct: 1153 FQ--WGVPDLDALRSFLMATIGWSQERTDEVLVPVIKDMNRRLDEGTQANITAFF 1205
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWQIVQPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R +D
Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKSRREGKRED 101
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 41/284 (14%)
Query: 136 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 195
+Q +D ++LL L G+P + AP EAEAQCA L ++G V V +ED D FGA + L+
Sbjct: 559 QQKFEDIRQLLALFGIPWIIAPGEAEAQCAYLQQNGLVDCVITEDSDVFLFGATKVLKGF 618
Query: 196 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 255
+ K ++ ++ I E+L L DQ I L + G DY I+G+G A++++
Sbjct: 619 FES---KTSLVYYDTQYIKEDLGLNRDQLIYLALFLGSDYTLGIKGVGIVNAMEIVEVFD 675
Query: 256 SIE-------------TILENIN--------RER------------YQIPEDWPYQEARR 282
++E +LEN + +ER +++P D+P E
Sbjct: 676 NVEALKRFTSWASKADVLLENASSHYENIPEKERIYKEFHKNYKKYWELPSDFPNIEVIN 735
Query: 283 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK--NKSSQG 340
+ +P V DE Q W P E +I F + ++ +RV + I KI K K Q
Sbjct: 736 GYMKPRV--DESLEQFTWGQPAVEKIIEFCSQQLRYSQERVEETI-KIPFQKIIQKEDQK 792
Query: 341 RLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGGGGGRKRK 384
++ FF+ + + R+ + +S+ +KRK
Sbjct: 793 KITDFFRVTSKIAIINSRRINQVVLNLNKPDQSRQNVQQKKKRK 836
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L KLLA A +++ S G ++AID S+ + + L + +G
Sbjct: 1 MGVYNLWKLLA-AAGRNID---IASLRGLRVAIDVSIWMIKLLHGMSNSGVNF------- 49
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
HL G+ R + LLE G+KP++VFDG P+LK+Q L KR +R +L + E
Sbjct: 50 ENVHLIGILKRIMFLLENGIKPVFVFDGPAPELKRQTLIKRAQQRQQYNINLQKLAE 106
>gi|393228982|gb|EJD36614.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 357
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 17/281 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L+ + + G+ + +D + +++ TE++T
Sbjct: 1 MGIQGLLPFLSG----IQQHTHLREFAGKTVGVDGYVWLHRGAY---SCATELVTGN--P 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-G 119
T +++ R + + P VFDG P K KR +R +A A ++ A G
Sbjct: 52 TTKYVEWAMQRVRLMQHHHVMPYVVFDGGPLPAKLGTEEKRQQQR-EANLSTANSLAAQG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + V VT Q + L+ VP + AP EA+AQ A L + G + A+ +E
Sbjct: 111 HHSQARDMYVKCVDVTPQMAYQLIKALRAANVPYIVAPYEADAQLAYLERQGLIDAILTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM----DQFIDLCILSGCDY 235
D D L FGA + L L D S + V + N + DQF + +L+GCDY
Sbjct: 171 DSDLLVFGARQALFKL-DSSGTCVSVCRSDFGSPALHPNTLVGWGDDQFRWMAMLAGCDY 229
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
DSI G+G +TA KL+R++ ++E +L+ + E + ++P D+
Sbjct: 230 LDSIPGMGLKTAHKLLRKYRTVEKVLQVVRFEGKCRVPRDY 270
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 35/235 (14%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q +L+L G+P + AP EAEAQCA L G V V ++D D FGA R +
Sbjct: 749 ITQQMISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYK 808
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL L D + L L G DY D + G+G A++L+++
Sbjct: 809 NMFNQSKT---VELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKE 865
Query: 254 HGSIETIL-----------------ENINRERYQ---------IPEDWPYQEARRLFKEP 287
+ E + E+ + R Q +P DWP R + P
Sbjct: 866 FPNKEGLHRFADWWRRVQEGKDKEEESNTKTRRQFKKKFKDLYLPSDWPNPAVRDAYYHP 925
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSS 338
V + EE KW PD + L F E G+ +V + I+K+ +N +S
Sbjct: 926 AVDSSEEPF--KWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRRRNNAS 978
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA-G 59
MG+K L LL + E+ G+ +AID+S+ IYQF M E G
Sbjct: 1 MGVKSLWTLLTPVGRPIL----LETVEGKTMAIDSSIWIYQFQAT-------MRDKEGRG 49
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
V +H+ G R +LL G+KP++VFDG P +K+ L++R K++ A
Sbjct: 50 LVNAHVLGFLRRITKLLFYGIKPVFVFDGGAPVIKRATLSERKKKKSGA 98
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 31 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP 90
+AID S + + L VV + + + ++ +F RT LL+ G+ P++V +G
Sbjct: 14 VAIDLSGWVCESLNVV-----DYFVHPRFYLRYVVKNLFFRTCYLLQTGITPVFVLEGAA 68
Query: 91 PDLKKQELAKRYS-----------KRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHN 139
P LK + KR D A AVE + + E+ R V KQ
Sbjct: 69 PPLKYGVIVKRNQLQFRGARPKKVANCDKAGATATAVEKASSKPTEQKRNRFHHVLKQ-- 126
Query: 140 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM-DP 198
C+ LL MG+ V+AP EAEA CA L + + V S+D D +GA R R+
Sbjct: 127 --CEELLSAMGLVCVQAPGEAEALCAYLNRDALIDGVISQDSDCFAYGAVRVFRNFCASQ 184
Query: 199 SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRGIGGQTALKLIRQHGSI 257
+ + V + E A L L ++ + + +LSGCDYC + + G+G + +L+ + +
Sbjct: 185 NGGSVDVYDLERANS-AGLRLGQEKIVAMALLSGCDYCPAGVAGVGREMVTRLLNCYDN- 242
Query: 258 ETILENINRER 268
ETIL+ I R
Sbjct: 243 ETILQRIRSWR 253
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 115/238 (48%), Gaps = 38/238 (15%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P V AP EAEAQCA L + G V + ++D D+ FG R +++ + +
Sbjct: 916 ECQQLLRLFGIPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMFNGNK 975
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E +A LE EL+L+ + I L L G DY D + G+G TA++++ + +
Sbjct: 976 ----FVECYLASDLEKELSLSQENLISLAQLLGSDYTDGLPGVGPVTAVEILSEFPGPDG 1031
Query: 260 ILE------------NINRE---------------RYQIPEDWPYQEARRLFKEPEVVTD 292
+ N++ + R +P +P + +PEV +D
Sbjct: 1032 LSRFADWWRQVQSSLNVSTDGWSSFLRKFRKSQATRLFLPPGFPSPAVPEAYLKPEVDSD 1091
Query: 293 EEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 346
E Q W APD GL +FL++ G++ +R + I I + + +Q + FF
Sbjct: 1092 PEPFQ--WGAPDLSGLRDFLMATIGWSQERTDEVLVPVIRDINRRELEGTQSNITRFF 1147
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++L A + K E +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWQVLQPCA----RPTKLEMLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 53 --SHVIGFFRRICKLLWFGIKPVFVFDGGAPVLKRATL 88
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 35/235 (14%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q +L+L G+P + AP EAEAQCA L G V V ++D D FGA R +
Sbjct: 781 ITQQMISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYK 840
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL L D + L L G DY D + G+G A++L+++
Sbjct: 841 NMFNQSKT---VELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKE 897
Query: 254 HGSIETIL-----------------ENINRERYQ---------IPEDWPYQEARRLFKEP 287
+ E + E+ + R Q +P DWP R + P
Sbjct: 898 FPNKEGLHRFADWWRRVQEGKDKEEESNTKTRRQFKKKFKDLYLPSDWPNPAVRDAYYHP 957
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSS 338
V + EE KW PD + L F E G+ +V + I+K+ +N +S
Sbjct: 958 AVDSSEEPF--KWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRRRNNAS 1010
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 18/113 (15%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MG+K L LL + E+ G+ +AID+S+ IYQF + GR
Sbjct: 1 MGVKSLWTLLTPVGRPIL----LETVEGKTMAIDSSIWIYQFQATMRDKEGR-------- 48
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADAT 109
G V +H+ G R +LL G+KP++VFDG P +K+ L++R K++ A
Sbjct: 49 --GLVNAHVLGFLRRITKLLFYGIKPVFVFDGGAPVIKRATLSERKKKKSGAV 99
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 36/245 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL L G+P + AP EAEAQCA L G V + ++D D+ FG R
Sbjct: 920 EVTQSMITECQHLLTLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVY 979
Query: 193 RHLMDPSSRKIPVMEFEVAK-ILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + + +E +A ++ E +LT D+ I + L G DY I GIG TAL+L+
Sbjct: 980 KNMFNAAK----FVECYLANDLVSEFSLTRDKMIAIAQLLGSDYTTGIPGIGPVTALELL 1035
Query: 252 RQHGSIE------------TILENIN-----RERYQ--------IPEDWPYQEARRLFKE 286
+ ++ TI ++ + R R++ +P +P Q +
Sbjct: 1036 AEFPDLQDFKDWWTGVQNNTIPKDADKNSAFRRRFRRGQATKLFLPPGFPDQRVADAYLH 1095
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRL 342
PEV +D E Q W PD L FL S+ G++ +R + I + + + +Q +
Sbjct: 1096 PEVDSDPEPFQ--WGVPDLAALRTFLSSQIGWSWERTDEVLVPVIRDMNRREKEGTQANI 1153
Query: 343 ESFFK 347
FF+
Sbjct: 1154 TRFFE 1158
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVLQPCA----RPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R
Sbjct: 53 --SHIVGFFRRVCKLLFIGIKPVFVFDGGAPVLKRQTINNRKSRR 95
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 44/272 (16%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 829 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 888
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + I L G DY + I G+G TAL++I + ++E
Sbjct: 889 ----FVECFLSNDLEKEYALDRVKLIQFAHLLGSDYTEGIPGVGPVTALEIITEFNNLEE 944
Query: 260 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 295
+ + + +IP D P+Q+ R+ FK +PEV +D +
Sbjct: 945 FRDWWMQVQMGVEIPND-PHQQFRKKFKKMATKVFLPPSFPDRHIDEAYMQPEVDSDPSE 1003
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFKPVAN 351
Q W PD GL +FL++ G++ R + + + NK +Q + F
Sbjct: 1004 FQ--WGVPDLNGLRSFLMATIGWSQQRTDEVLVPVIRDMNKREQEGTQSNITRFMSGAVG 1061
Query: 352 TSAPIKRKEPENTPKATTNKKSKAGGGGGRKR 383
A P+ + KS+ G GR R
Sbjct: 1062 AGA--------FAPRVRADGKSRMGKALGRLR 1085
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+H+ G F R +LL G+KP++VFDG P LK+Q +A R +R
Sbjct: 53 --AHVVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIAARKKRR 95
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L K G V + ++D D+ FG R
Sbjct: 872 EVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVKLGIVDGIVTDDSDTFLFGGTRVY 931
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + S K +E + K LE EL+L+ DQ I L L G DY + + G+G TA++++
Sbjct: 932 KNMFN--SNKF--VECYIGKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEIL 987
Query: 252 RQHGSIETILENIN---------------------RERYQ--------IPEDWPYQEARR 282
+ ++ LEN R++++ +P +P
Sbjct: 988 SEFPG-KSGLENFREWWTSVQSQSRPKEADAASPFRKKFRKTQATKLFLPPGFPNPAVHE 1046
Query: 283 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
+ PEV E Q W PD EGL FL++ G++ +R + + + NK
Sbjct: 1047 AYLHPEVDDSAEPFQ--WGVPDLEGLRRFLMATIGWSKERTDEVLVPVIRDMNK 1098
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWTVVQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 95
SH+ G F R +LL G++P++VFDG P LK+
Sbjct: 53 --SHVVGFFRRICKLLWFGIQPVFVFDGGAPALKR 85
>gi|409048552|gb|EKM58030.1| hypothetical protein PHACADRAFT_90326 [Phanerochaete carnosa
HHB-10118-sp]
Length = 320
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 129/292 (44%), Gaps = 21/292 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL K + Y G+ IA+DA + +++ T++ T G+
Sbjct: 1 MGISGLLPLL----KPIQKHKHLSEYSGQTIAVDAYVWLHRGTYA---CATDLAT---GK 50
Query: 61 VTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T+ +RLL + P VFDG P KK + R KR + G
Sbjct: 51 KTTKYVNYAMHRVRLLKHYNIIPYIVFDGGPLSAKKGTESDRKKKREENLARANSLAAQG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + + VT Q + L+ V V AP EA+AQ A L + G V + +E
Sbjct: 111 KHTQAREYYVKCIDVTPQMAFQFIKALRAENVAYVVAPYEADAQMAYLERIGLVDGILTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-------LEELNLTMDQFIDLCILSG 232
D D L FG L L S I + + A + + L + QF + ILSG
Sbjct: 171 DSDLLVFGCKSVLLKLDTVESTVISISRQDFASLTASSGGGISLLGWSDVQFRAMAILSG 230
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 283
CDY SI +G +TA L+R+HG +E ++ + E + IP+ Y +A RL
Sbjct: 231 CDYLPSIPSVGLKTAWSLLRKHGCVENVIRALRIEGKKSIPQG--YLQAFRL 280
>gi|403375999|gb|EJY87977.1| Exonuclease 1 [Oxytricha trifallax]
Length = 835
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 20/282 (7%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIK L L P+++ E Y G+ +A+D ++Q G M
Sbjct: 1 MGIKDLLPHLKSIQRPRNVCE-----YRGQTVAVDGYCWLHQ-----GAYTCAMDLAYGR 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
V + + LL AG+KPI +FDG +K +R + R +A E G
Sbjct: 51 GVDKLIAYCNMKLQMLLNAGVKPIIIFDGCRLIMKGNTENERRNNRLEARIKAEEYQREG 110
Query: 120 NKE-DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
N + KFS+ +V +T + + ++LK + AP EA+AQ A + G+ + +
Sbjct: 111 NYAMAMRKFSE-SVDITPEMAFEFIQVLKQADIEYYVAPYEADAQLAYMYLKGKAQVIIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLT---MDQFIDLCILSGCDY 235
ED D L FG + L MD + I + + E + ELN T D + CILSGCDY
Sbjct: 170 EDSDLLIFGVKKVL-FKMDKAGNGIEI-DLENLNDVTELNFTKFNQDMLLTCCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHG-SIETILENINRE-RYQIPEDW 275
+SI+GIG + A KL+ G +++ IL+ + RE + IP+D+
Sbjct: 228 LESIKGIGFKKAHKLVYDEGDNVQGILKRVRREGKMLIPQDY 269
>gi|348686536|gb|EGZ26351.1| hypothetical protein PHYSODRAFT_540882 [Phytophthora sojae]
Length = 398
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 129/291 (44%), Gaps = 38/291 (13%)
Query: 1 MGIKGLTKLLADNAPKSMKEQK-FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL +L KS+ E K E Y GR +AID +++ + E+ +
Sbjct: 1 MGISGLLPVL-----KSITETKSIEQYRGRTLAIDGYCWLHR---AIYSCSQEICLGQ-- 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK-------------QELAKRYSKRA 106
E ++ R LL G+ P VFDG P +KK +EL ++
Sbjct: 51 ETDKYVTYFMDRITTLLHNGVTPYVVFDGGPLPMKKGTEEERRKARQKNRELGVQHYNNK 110
Query: 107 DATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAA 166
++ + A D+ + +V +QH LK V V AP EA+AQ A
Sbjct: 111 RFSEARRCFIRAA---DVSPYMAH--RVIQQH-------LKAHNVQYVVAPYEADAQLAY 158
Query: 167 LCKSGQVYAVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFI 225
L K+G V +ED D L FG L + D +++I + + K L T F+
Sbjct: 159 LVKNGLADGVITEDSDCLPFGCQTVLFKMDRDNVAQEIQAVNLKKNKGLSFHMFTEQMFL 218
Query: 226 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
++CI SGCDY SI G G + A ++QHGS I+ + E + +IP +
Sbjct: 219 EMCIFSGCDYLPSISGFGLKKAYTAMKQHGSFTKIIRALRLEGKVRIPASY 269
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 29/280 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKI-AIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIK L LL P K+ FE RK+ AID S + + L VV
Sbjct: 1 MGIKDLWNLLT---PYCEKKPLFE--LNRKVVAIDLSGWVCESLNVVDYFVHPRF----- 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK------KQELAKRYSKRADATDDLA 113
+L+ +F RT LL G+ P++V +G P LK + ++ R ++ A D
Sbjct: 51 ----YLRNLFFRTCYLLTTGIVPVFVLEGAAPPLKYGVIIQRNQIQFRGARPKKAADCDK 106
Query: 114 EAVEAGNKEDIEKFSKRTV--KVTKQHN--DDCKRLLKLMGVPVVEAPSEAEAQCAALCK 169
EA G+K ++ KR K + H+ C+ LL MG+ V+AP EAEA CA L +
Sbjct: 107 EAT-GGDKRKQDEPGKRAPEQKRNRFHHVLKQCEELLSSMGLVCVQAPGEAEALCAHLNR 165
Query: 170 SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 229
V+ + S+D D +G R R+ S V +++ I ++L ++ + + I
Sbjct: 166 ENLVHGIISQDSDCFAYGGVRVYRNFC-ASQNGGSVEIYDLENIRRVMDLGQEKIVVMGI 224
Query: 230 LSGCDYCDS-IRGIGGQTALKLIRQHGSIETILENINRER 268
LSGCDY + + G+G + +LIR + S E IL+ I R
Sbjct: 225 LSGCDYSPAGVPGVGRELVHRLIRSYPSWE-ILDRIRAWR 263
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 52/294 (17%)
Query: 98 LAKRYSKRADATDDLAEAVEAGNKEDIE-----------KFSKRTVKVTKQHNDDCKRLL 146
LA+ + A +L NKED E K + +VT+ +C+ LL
Sbjct: 847 LAEESEEHARFASELNNKTAEQNKEDYERELRALRTQQKKDRRDADEVTQVMITECQALL 906
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
+L G+P V AP EAEAQCA L G V + ++D D+ FG R +++ + S K V
Sbjct: 907 RLFGIPYVTAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFN--SNKF-VE 963
Query: 207 EFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 266
+ V+ I +EL+LT +Q I L L G DY + + G+G TA++++ + + N R
Sbjct: 964 CYLVSDIEKELSLTREQLISLAHLLGSDYTEGLPGVGPVTAVEILSEFPGRSGL--NNFR 1021
Query: 267 ERYQ------------------------------IPEDWPYQEARRLFKEPEVVTDEEQL 296
E ++ +P +P + PEV E
Sbjct: 1022 EWWKSVQSQTRPKDADVSTPFRKKFRKSQGTKLFLPPSFPSPAVNDAYLHPEVDDSNEDF 1081
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 346
Q W PD EGL FL++ G++ +R + + + NK +Q + FF
Sbjct: 1082 Q--WGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKRDREGTQSNITRFF 1133
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWTVVQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+ P++VFDG P LK+Q + R +R +D
Sbjct: 53 --SHVVGFFRRICKLLWFGILPVFVFDGGAPVLKRQTIQHRKQRREGRRED 101
>gi|407394233|gb|EKF26855.1| hypothetical protein MOQ_009436 [Trypanosoma cruzi marinkellei]
Length = 772
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 28/287 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEM------- 53
MGIKGL ++ P ++ ++ G+++A+D + +++ ++ + GT
Sbjct: 1 MGIKGL---WSEVRP-VCRQSHLSNFRGQRVAVDMYVWLHRGILGSVQLGTSADAEAFME 56
Query: 54 ---LTNEAGEVTSH-------LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYS 103
+T+EA +V LQ + R +L G+ P+ VFDG +K+ A+R
Sbjct: 57 SAEMTSEAADVGGSVLLSYKFLQFVVGRVDLMLRCGVHPVLVFDGASIPMKQGTEAERQM 116
Query: 104 KRADATDDLAEAVEAGN------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 157
RA + + ++ G +++ + ++ + +T + ++LK + + AP
Sbjct: 117 LRAARLAEALQVLKQGGPSNPRARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAP 176
Query: 158 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 217
EA+AQ A LCK G V AV SED D + + P + L ++ + ++ +
Sbjct: 177 YEADAQLAYLCKEGYVQAVVSEDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFY 235
Query: 218 NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 264
L+ + F+ CILSGCDY S+R IG + A +L+ Q S+ +I+ ++
Sbjct: 236 GLSYESFLVGCILSGCDYLPSLRHIGVKKAFRLVAQATSVPSIMRSL 282
>gi|145252118|ref|XP_001397572.1| exonuclease [Aspergillus niger CBS 513.88]
gi|134083116|emb|CAK46789.1| unnamed protein product [Aspergillus niger]
Length = 758
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 13/278 (4%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL KS+ K + + G+ + IDA +++ + +++
Sbjct: 1 MGIKGLHGLL-----KSIQKPCHLKKFSGQTLGIDAYGWLHRGTVACA---VDLVLERP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H+ + R LL G+ P VFDG K +R +R D+ E G
Sbjct: 52 -TRKHIDFVLNRVRMLLYFGVTPYLVFDGDELPSKAGTEVERQKRRQDSKALGLELQRKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT + LK + V V AP EA+AQ A L + G + + SE
Sbjct: 111 RIAEAYQELQKAVDVTPLMARELIEELKKINVQYVVAPYEADAQLAYLERQGVISGIISE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FGA R L L +I +F + + + T D F +CILSGCDY +
Sbjct: 171 DSDLLVFGAKRLLSKLDQHGDCIEINRADFSACREVSLIGWTDDDFRRMCILSGCDYLPN 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
I +G +TA + IR++ ++E L + + +Y +P D+
Sbjct: 231 IARLGLKTAYRSIRKYKNVERALRMLQFDGQYHVPSDY 268
>gi|148270937|gb|ABQ53635.1| exonuclease [Cucumis melo]
Length = 336
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 24/283 (8%)
Query: 1 MGIKGLTKLL-ADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL + P +K+ + G +AID Y +L ++ L N G
Sbjct: 1 MGIQGLLPLLKSIMLPIHIKDLE-----GSSVAIDT----YSWLHKGAFCCSKELCN--G 49
Query: 60 EVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
TS H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 50 LPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKSEQEIKRARTR---KENLARATEH 106
Query: 119 ---GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
GN + ++ V +T + ++LK V V AP EA+AQ L S QV A
Sbjct: 107 EMNGNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDA 166
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL---TMDQFIDLCILSG 232
V +ED D + FG PR + MD + + +++ + ++LNL T +++CILSG
Sbjct: 167 VLTEDSDLIPFGCPRIIFK-MDKFGQGVE-FRYDMLQKNKDLNLSGFTKQMILEMCILSG 224
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
CDY S+ G+G + A LI++ S E ++ ++ +P +
Sbjct: 225 CDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVSVPHLY 267
>gi|389747667|gb|EIM88845.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 322
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 139/303 (45%), Gaps = 25/303 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYF-GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS++ Q+ S F G+ +A+D + +++ TE+ T G
Sbjct: 1 MGISGLLPLL-----KSIQVQRHLSEFQGQTLAVDGYVWLHRGSYT---CATELAT---G 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ TS + +RLL+ G+ P VFDG P K+ R +R + +
Sbjct: 50 KNTSKYVEYAMKNVRLLQHYGITPYLVFDGGPLPAKRGTETDRQQRRQENLERGNVLAAQ 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G F + V VT Q + LK VP + AP EA+AQ A L + G V + +
Sbjct: 110 GRHSQARDFYTKCVDVTPQMAYQLIKALKAENVPYIVAPYEADAQLAYLERQGVVQGIIT 169
Query: 179 EDMDSLTFGAP--RFLRHLMDPSSRKIPVMEFEVAKILEELN--LTMDQFID-----LCI 229
ED D L FG F ++ + I +F + L++ + D + I
Sbjct: 170 EDSDLLVFGCQNVHFKLDSVNATITSISRSQFSSVTATSPFSNGLSLQGWSDVEFRAMAI 229
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWP--YQEARRLFKE 286
LSGCDY S+ G+G +TA L+R+HG E ++ + E + ++P + ++ A ++F
Sbjct: 230 LSGCDYLPSVPGVGLKTAWTLLRKHGKWEKVVRALRLEGKKEVPRGYEAMFKRAEKVFLH 289
Query: 287 PEV 289
V
Sbjct: 290 QRV 292
>gi|410078279|ref|XP_003956721.1| hypothetical protein KAFR_0C05950 [Kazachstania africana CBS 2517]
gi|372463305|emb|CCF57586.1| hypothetical protein KAFR_0C05950 [Kazachstania africana CBS 2517]
Length = 719
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 18/281 (6%)
Query: 1 MGIKGLT-KLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL +L P ++ Y G+ + ID +++ E++ NE
Sbjct: 1 MGIQGLLPQLKPIQNPVTLHR-----YEGQTLGIDGYAWLHRAAFACS---YELVMNEPT 52
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
E +LQ F + IR+L++ ++P ++FDG +KK KR KR + + A
Sbjct: 53 E--KYLQ-FFIKKIRMLKSFNIEPYFIFDGDSIPVKKNTELKRRDKRVENKEMAMRLWNA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G K + F ++ V +T + K+ + V AP EA++Q L K G ++ + S
Sbjct: 110 GEKRNAMDFFQKCVDITPEMAKCVIEYCKINNIKYVVAPFEADSQMVYLEKKGLIHGIIS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCDY 235
ED D L FG + + L D I + + +++ ++ L +Q + LSGCDY
Sbjct: 170 EDSDLLIFGCKKLITKLND-YGECIEIRRDDFSRLPKKFPLGQLNDEQIRAVVCLSGCDY 228
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
D I IG TA KL+ Q +E ++ + RE +++IP ++
Sbjct: 229 TDGIPKIGLLTAFKLVNQWKQMEKVILYLQREGKWKIPANF 269
>gi|50309395|ref|XP_454705.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643840|emb|CAG99792.1| KLLA0E16743p [Kluyveromyces lactis]
Length = 671
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 132/297 (44%), Gaps = 27/297 (9%)
Query: 1 MGIKGLT-KLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ GL +L P S+ Y G +AID +++ E+ ++
Sbjct: 1 MGVSGLLPQLKPIQNPVSLAR-----YQGETLAIDGYAWLHR---SAHSCAMELAMDQPT 52
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ +LQ R L + P +VFDG +KK+ KR KR + + EAG
Sbjct: 53 D--KYLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELKRAEKRKENREKAHALFEAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + ++ V +T L++ +P V AP EA+AQ L K G V + SE
Sbjct: 111 DRRLAYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--------LTMDQFIDLCILS 231
D D L FG R + L D + +E + + E LN LT DQ L LS
Sbjct: 171 DSDLLVFGCTRLITKLNDNAE----CIEID-RRNFERLNEGKFPLSKLTEDQLRSLVCLS 225
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPED-W-PYQEARRLFK 285
GCDY I +G TA+K + ++ ++E ++ I RE + +P W YQ A F+
Sbjct: 226 GCDYTSGIPKVGLVTAMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQ 282
>gi|325182167|emb|CCA16620.1| exonuclease 1 putative [Albugo laibachii Nc14]
Length = 701
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 42/334 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL + +E+ Y G +A+D ++Q V+ R + + E
Sbjct: 1 MGITGLLPLLKGVS----QEKTLADYRGETLAVDGYCWLHQ---VMHRCSEDTFLDPKSE 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDG-QPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++ R L+ G+ P VFDG P E A+R +++ D + + +
Sbjct: 54 --RYIDYFMARVDNLVRHGVSPYIVFDGGSLPSKAHTEEARRLARQNDRAKAM-QFLSQN 110
Query: 120 NKEDIEKFSKRTVKVTKQ-------------------HNDDCKRLLKLMGVPVVEAPSEA 160
NKE K R + ++ H ++ L+ + V AP EA
Sbjct: 111 NKEQARKHFSRAIDISPYMAHRVILVPSFELDLVQCLHICTGRQRLRQKNIKYVVAPYEA 170
Query: 161 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL--EELN 218
+AQ A L K G V V +ED D L F + + MD + + E +V IL E N
Sbjct: 171 DAQLAYLVKCGLVNGVITEDSDCLVFDCNKVV-FKMDWNGKG---QEIKVQSILRNSEPN 226
Query: 219 L---TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPED 274
+ T D F+++CI SGCDY +I +G +T+ L R++GS+ +L N+ E + ++P
Sbjct: 227 MQGFTHDMFMEMCIFSGCDYLANIPRLGLKTSYNLFRKYGSVRKVLRNLRLEGKVKVPAS 286
Query: 275 W--PYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 306
+ + +A+ FK V + + S+P ++
Sbjct: 287 YEEDFAKAKLTFKHQRVYDPLNKKLVFLSSPPDD 320
>gi|395327368|gb|EJF59768.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 326
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 141/303 (46%), Gaps = 25/303 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYF-GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL D + K S F G+ +A+DA + +++ G G
Sbjct: 1 MGISGLLPLLKD-----IHNTKHLSEFRGQTLAVDAYVWLHR-----GTYGCAAEIATGK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ + +++ R L G+ P VFDG P KK A+R ++RA+A G
Sbjct: 51 KTSKYVEYAMHRVRLLRHHGIAPFLVFDGGPLPAKKGTEAERRARRAEALARANALAAQG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + V VT Q + L++ GVP V AP EA+AQ A L + G V + +E
Sbjct: 111 EHARARECYVKCVDVTPQMAYQLIKALRVEGVPYVVAPYEADAQLAYLERIGLVDGIMTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKI---------PVMEFEVAKILEELNLTMD-QFIDLCI 229
D D L FG L L DP++ + V + L D QF + I
Sbjct: 171 DSDLLVFGCKNVLFKL-DPAAATVTHISRADFAAVASADGGGSGLSLLGWSDAQFRTMAI 229
Query: 230 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKE 286
LSGCDY SI GIG +TA L+R+H ++E +++ + E + ++P+ + ++ A R+F
Sbjct: 230 LSGCDYLPSIPGIGLKTAWALLRKHRTVENMVDALRLEGKKKVPKGYLDAFRRAERVFMH 289
Query: 287 PEV 289
V
Sbjct: 290 QRV 292
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 134/275 (48%), Gaps = 36/275 (13%)
Query: 100 KRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 159
K ++ ADA D + + A K+D + +V+ +C++LLKL G+P + AP E
Sbjct: 782 KSQAENADAFDRELKQLRAQQKKD----RRDADEVSHIMVTECQQLLKLFGLPYITAPME 837
Query: 160 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL 219
AEAQCA L G V + ++D D+ FG R +++ + + V + V+ + +E +L
Sbjct: 838 AEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNQAKF---VECYLVSDLEKEYSL 894
Query: 220 TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE-------------TILENIN- 265
+ I L G DY + I GIG TAL+++ + +E +I ++++
Sbjct: 895 DRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFSDLEDFKDWWSQVQMGVSIPDDVHS 954
Query: 266 --RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 316
R++++ +P +P + + EPEV +D Q W PD E L +FL++
Sbjct: 955 KFRKKFKKNAAKLFLPPAFPDRRVDAAYLEPEVDSDPSAFQ--WGVPDLEALRHFLMTAV 1012
Query: 317 GFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
G++ +R + I + + + +Q + FF+
Sbjct: 1013 GWSPERTDEVLVPVIRDVNRRELEGTQANITQFFE 1047
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVLKPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLYFGIKPVFVFDGGAPTLKRQTIA 89
>gi|384483460|gb|EIE75640.1| hypothetical protein RO3G_00344 [Rhizopus delemar RA 99-880]
Length = 515
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 22/278 (7%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LLA P + K + Y G+ +AID +++ E+ N+
Sbjct: 1 MGITGLLPLLA---PIT-KPIHIQEYAGKIVAIDGHCWLHKGSF---SCALELALNQP-- 51
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T+ F I +L + P+ VFDGQ +K++ +KR KR ++ + + V+
Sbjct: 52 -TTKYVSYFMNLINMLRFYKVIPLVVFDGQSLPMKQETNSKRAQKRKESFNIGFKLVKDN 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ + ++++ +T+ + L +GV V AP EA+AQ A L K+ A +E
Sbjct: 111 KIKEALPYLQQSISITQDMIQQVVKKLDEIGVQHVIAPYEADAQLAYLLKNNYAQAAITE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVM--EFE-VAKILEELNLTMDQFIDLCILSGCDYC 236
D D L FG + L +R M FE ++K+++ ++ +C+LSGCDY
Sbjct: 171 DSDLLAFGCSTVIFKL----NRYGDCMRIHFEDISKVIDIKPFSVTTLRHICMLSGCDYL 226
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENI----NRERYQ 270
S++GIG +TA LI++H +IE +++ + N RYQ
Sbjct: 227 PSLKGIGLKTAETLIKKHLTIEKVMKALRFRQNIARYQ 264
>gi|389641011|ref|XP_003718138.1| exonuclease 1 [Magnaporthe oryzae 70-15]
gi|351640691|gb|EHA48554.1| exonuclease 1 [Magnaporthe oryzae 70-15]
gi|440475111|gb|ELQ43812.1| exonuclease 1 [Magnaporthe oryzae Y34]
gi|440490176|gb|ELQ69760.1| exonuclease 1 [Magnaporthe oryzae P131]
Length = 780
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 145/310 (46%), Gaps = 19/310 (6%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS+ + + + + G +A+DA +++ + L G
Sbjct: 1 MGIVGLLPLL-----KSIQRPTELKKFAGETLAVDAYGWLHRGAVSCA------LELAQG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T +R+++ G P VFDG K A R +R ++ E ++A
Sbjct: 50 KPTRKYVDFAMHRVRMVKYFGATPYIVFDGDFLPSKALTEASRAKRREESKKAGMELLKA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + ++ + VT + + LK + VP V AP EA+AQ L ++G V + S
Sbjct: 110 GKPAQAYQEFQKAIDVTPEMARELIEELKKIDVPYVVAPYEADAQMVYLERNGYVSGIIS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ED D L FGA R L L D + I V EF + + T +F + I SGCDY
Sbjct: 170 EDSDLLVFGAKRLLTKL-DQHGQCIEVNRREFCAVREISLTGWTDAEFRQMAIFSGCDYL 228
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDE 293
D I +G +TA ++IR+H + E ++ + E +++I E++ +++A F V E
Sbjct: 229 DGINKMGLKTAYRMIRKHKTPEKVIRQLQFEGKHKISENYLAAFKQAELTFMHQRVFCPE 288
Query: 294 EQLQIKWSAP 303
+Q + + P
Sbjct: 289 KQELVLLTEP 298
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 50/294 (17%)
Query: 97 ELAKRYSKRADATDDLAEAVEAGNKEDIE-----------KFSKRTVKVTKQHNDDCKRL 145
++A+ + A +L NKED E K + +VT+ +C+ L
Sbjct: 855 QMAEEAEEHARFASELNNKTAEQNKEDYERELRALRNQQKKDRRDADEVTQVMITECQAL 914
Query: 146 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 205
L+L G+P + AP EAEAQCA L + G V + ++D D+ FG R +++ + S K V
Sbjct: 915 LRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMFN--SNKF-V 971
Query: 206 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 265
+ V I +EL+L+ +Q I L L G DY + + G+G TA++++ + ++ LEN
Sbjct: 972 ECYLVGDIEKELSLSREQLISLAHLLGSDYTEGLPGVGPVTAVEILSEFPG-KSGLENFR 1030
Query: 266 ---------------------RERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQL 296
R++++ +P +P + PEV E
Sbjct: 1031 EWWRSVQSQTRPKDADVSTPFRKKFRKSQGTKLFLPPGFPNPAVYDAYLHPEVDDSNENF 1090
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 346
Q W PD EGL FL++ G++ +R + + + NK +Q + FF
Sbjct: 1091 Q--WGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKRDREGTQSNITRFF 1142
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SH+ G F R +LL G++P++VFDG P LK+Q +
Sbjct: 53 --SHVVGFFRRICKLLWFGIQPVFVFDGGAPILKRQTI 88
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 120/254 (47%), Gaps = 33/254 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFG-RKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ GL +L+ S++E + S G +A+D S+ I G + +T
Sbjct: 1 MGVHGLWGILS-----SVQEYRPLSKIGCDSVAVDLSIWI---------CGDKSITPLPA 46
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
HL+ +F R + LL PI V DG P LK + +R K +
Sbjct: 47 L---HLRNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQKWTGKI-----TTQKC 98
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K ++ + R KV+++ C +LL G+P V++P EAEA CA L + V A +
Sbjct: 99 TKPNLNRI--RFSKVSQE----CIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITN 152
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D+ +GA RH MD SR V F + +IL+ LNLT + L IL GCDY S
Sbjct: 153 DGDAFLYGAETVYRHFSMD--SRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWAS 210
Query: 239 -IRGIGGQTALKLI 251
+ +G AL+LI
Sbjct: 211 GVSRLGPVGALRLI 224
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 37/247 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L GVP + AP EAEAQCA L + V + ++D D+ FG R
Sbjct: 900 EVTQVMVTECQALLRLFGVPYITAPMEAEAQCAELVRLNLVDGIVTDDSDTFLFGGTRVY 959
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + S K V + + + +EL L+ +Q I L L G DY + I GIG TA++++
Sbjct: 960 KNMFN--SNKF-VECYLLRDLEDELELSREQLIALAQLLGSDYTEGIPGIGPVTAVEILS 1016
Query: 253 QH------GSIETILENIN--------------RERYQ--------IPEDWPYQEARRLF 284
+ +T E++ R +++ +P +P +
Sbjct: 1017 EFPGREGLSDFKTWWEDVQSGKRPKEADASSPFRRKFRKGQATKLFLPLGFPSPAVFDAY 1076
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQG 340
PEV + +EQ Q W PD EGL FL+S G++ +R + I + + + +Q
Sbjct: 1077 LHPEVDSSQEQFQ--WGVPDLEGLRQFLMSTIGWSKERTDEVLVPVIRDVNRREAEGTQA 1134
Query: 341 RLESFFK 347
+ +F+
Sbjct: 1135 NITRYFE 1141
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL ++ A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVQGLWTVVQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 53 --SHIVGFFRRLCKLLWYGVKPVFVFDGGAPALKRATL 88
>gi|389634309|ref|XP_003714807.1| flap structure-specific endonuclease [Magnaporthe oryzae 70-15]
gi|351647140|gb|EHA55000.1| flap structure-specific endonuclease [Magnaporthe oryzae 70-15]
gi|440465671|gb|ELQ34981.1| flap structure-specific endonuclease [Magnaporthe oryzae Y34]
gi|440490374|gb|ELQ69936.1| flap structure-specific endonuclease [Magnaporthe oryzae P131]
Length = 932
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 140/322 (43%), Gaps = 76/322 (23%)
Query: 30 KIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ 89
+IAID +SI+QF I R G T + +F R RLL ++PI+VFDG
Sbjct: 34 RIAID--ISIWQFQIQAARGGANAPT----------RTLFYRLARLLGHSIQPIFVFDG- 80
Query: 90 PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLM 149
P+ + +R + R AT D+ N KR+++L
Sbjct: 81 -PNKPAFKRNRRSTTRGGATGDVVS------------------------NAMAKRMIRLF 115
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR--KIP--V 205
G EAP EAEA+CA L + G V AV SED+D++ FG R LR+ R K P V
Sbjct: 116 GFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRNWSSEGVRGSKEPTHV 175
Query: 206 MEFEVAKI-LEELNLTMDQFIDLCILSGCDY-------------CDSIRGIGGQTALKLI 251
++ A I + L + + + ++SG DY C++ RG G + ++
Sbjct: 176 SMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACEAARGGFGHSLCRIK 235
Query: 252 RQHGSI-----ETILENIN-------RERYQ---IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ S E +L + R R++ IP+D+P E R + P V DE
Sbjct: 236 KSDSSALAEWKEKLLAELRDNKSGFFRVRHRALVIPDDFPSIEVLRYYTHPVVSQDETLE 295
Query: 297 QIKWSAP-----DEEGLINFLV 313
++ S P D +GL F+
Sbjct: 296 HLENSFPSNNSLDVQGLRQFVA 317
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 38/235 (16%)
Query: 145 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 204
+L+L G+P + AP EAEAQCA L + G V + ++D D FG R +++ + S
Sbjct: 913 MLRLFGIPYITAPMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNMFNQSKT--- 969
Query: 205 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ-HG--SIETIL 261
V F ++ + EL L ++ + L L G DY + + G+G A++L+++ HG ++
Sbjct: 970 VECFLLSDLARELGLERNKLVQLAYLLGSDYTEGLPGVGPVVAMELLKEFHGDDALSDFR 1029
Query: 262 E-----NINRERYQ------------------IPEDWPYQEARRLFKEPEVVTDEEQLQI 298
E R+R + +P+DWP + + P V D+ +
Sbjct: 1030 EWWVKVQSGRDRPEESKSKFKKRFKKRFKDLYLPDDWPNAAVKEAYYHPTV--DDSEEPF 1087
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-------SSQGRLESFF 346
KW PD +GL + E G++S +V + + I NK + QG L FF
Sbjct: 1088 KWGLPDLDGLRSLFQDELGWSSSKVEELLLPIIQKMNKRGQVQALNRQGNLNEFF 1142
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L LL+ + E+ G+ +AID+S+ IYQF + L N
Sbjct: 1 MGVKSLWDLLSPVGRPVL----LETMEGKAMAIDSSIWIYQFQATMRDKEGRALVN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
+HL G R +LL G+KP++VFDG P LK+ +++R K++ A
Sbjct: 53 --AHLVGFLRRICKLLFYGIKPVFVFDGGAPALKRATISERKKKKSGA 98
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L+ P ++ +E G+ IAID S + ++ + + A +
Sbjct: 1 MGVKDLWNILS---PLCDRKPLYELQ-GKTIAIDLSGWV---------VDSQTIVDNAVQ 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+L+ ++ RT LL G+ P++V +G+ PD+K + + +R++ R + + + G
Sbjct: 48 SKMYLRNLYFRTAFLLMHGISPVFVLEGKAPDIKHKTIIRRHNVRHGFCE--RKTSKKGG 105
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + +CK++L+ MG+ +++ EAEA CA L + G V S+D
Sbjct: 106 RSQFNRILT-----------ECKQMLEYMGITCIQSHGEAEAMCAYLNEDGLVDGCISQD 154
Query: 181 MDSLTFGAPRFLRHLM-----DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 235
D +GA R+ + +R V + + KI + LN+ ++ I L +L GCDY
Sbjct: 155 SDCFLYGARIVYRNFCTSIQGNCGARGGSVDIYCMDKIEKILNIGRNKMIALALLCGCDY 214
Query: 236 CDSIRGIGGQTALKLIR 252
+ + G+G + ALK +
Sbjct: 215 DEGVTGVGKEAALKFFK 231
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 39/281 (13%)
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
QEL+ + R D ++L + + A K+D + +VT+ +C++LL L G+P +
Sbjct: 905 QELSNNTAARVDFDEELKQ-LRAQQKKD----RRDADEVTQTMISECQQLLALFGLPYIT 959
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP EAEAQCA L G V + ++D D+ FG R +++ + + V + + +
Sbjct: 960 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAKF---VECYLSSDLTS 1016
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR---------------QHGSIETI 260
E +LT + ID+ L G DY + I GIG TAL+++ Q+GSI+
Sbjct: 1017 EFSLTRQKLIDIAQLLGSDYTEGIPGIGPVTALEILSEFQDLTAFRKWWDGVQNGSIKKS 1076
Query: 261 --LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310
++ R R++ +P +P + PEV + E Q W PD L
Sbjct: 1077 DDAQSSFRRRFRKNQATKLFLPASFPDPRVADAYLNPEVDSSPEPFQ--WGVPDLAALRA 1134
Query: 311 FLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
+L S+ G++++R + I + + + +Q + FF+
Sbjct: 1135 YLSSQIGWSTERTDEVLVPVIRDMNRREKEGTQANITRFFE 1175
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVLQPCA----RPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R DD
Sbjct: 53 --SHIVGFFRRVCKLLFIGIKPVFVFDGGAPALKRQTIRHRKSRREGRRDD 101
>gi|397601505|gb|EJK57927.1| hypothetical protein THAOC_21987, partial [Thalassiosira oceanica]
Length = 268
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 41/235 (17%)
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 207
L G+P VE+PSEAEAQCAAL + G V V +ED D FG + ++ D V
Sbjct: 1 LCGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKF---VEA 57
Query: 208 FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ-----------HGS 256
+ I EL L D+ + L +L G DY D +RG+G ++++R HG
Sbjct: 58 YYARDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAFPPAADGVEGVHGG 117
Query: 257 IETI---LENIN---------------------RERYQIPEDWPYQEARRLFKEPEVVTD 292
+ ++ IN R R+ P D+P + + +P V D
Sbjct: 118 LSRFRDWMDGINDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLKPAV--D 175
Query: 293 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
+ W+ PD + L F G+ + + + + K ++ S+Q RLES+F
Sbjct: 176 TSGTRFTWARPDLDALQRFCADSLGWEREETARVVGPVLKVLESTSTQTRLESYF 230
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 35/225 (15%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 875 EVTQVMISECQTLLQLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 934
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKL-- 250
+++ + S++ + + ++I EL+L+ +Q I L +L G DY + + G+G TAL++
Sbjct: 935 KNVFN-SNKYVEC--YLASEIESELSLSREQLISLALLLGSDYTEGLPGVGPVTALEILS 991
Query: 251 -------------------IRQHG---------SIETILENINRERYQIPEDWPYQEARR 282
++Q G T + + +P WP
Sbjct: 992 HFPPGDKQALIQFAEWWTDVQQRGRPASADASSPWRTKFRRAHATKLFLPPGWPSPAVWD 1051
Query: 283 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
+ PEV + E Q W PD EGL FL+ G+ ++ + +
Sbjct: 1052 AYLSPEVDSSPEPFQ--WGVPDVEGLRRFLMGTVGWGKEKTDEVL 1094
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ L +L+ +A + + +++AIDAS+ IYQFL V L N
Sbjct: 1 MGVQSLWTILSPSA----RPTDLATLNRKRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SHL G F R +LL G+KP++VFDG P LK+ L
Sbjct: 53 --SHLVGFFRRICKLLWYGVKPVFVFDGGAPALKRATL 88
>gi|303391387|ref|XP_003073923.1| exonuclease 1 [Encephalitozoon intestinalis ATCC 50506]
gi|303303072|gb|ADM12563.1| exonuclease 1 [Encephalitozoon intestinalis ATCC 50506]
Length = 363
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 20/288 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL ++A K SY +++ ID +YQ L V EM
Sbjct: 1 MGISGLLPIVASKLVK----MHISSYRHKRLGIDGHAWLYQILSCVAE---EMFFRIP-- 51
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T MF ++LLE G+ PI V DG K++ KR ++ + + +
Sbjct: 52 -TKRYVSMFEEKVKLLENYGITPIIVLDGDLLSSKEETNRKRQIRKEKSRKEAEYWLMKN 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ E + F ++ + VT+ D ++L+ + V + +P E++AQ L + G + + +E
Sbjct: 111 DPEKAKAFMRQCISVTRGVVSDITKMLERIDVEYIISPYESDAQLCYLERIGYIDYILTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ-FIDLCILSGCDYCDS 238
D D + +G+ R L + R EF + + E ++ +D+ ILSGCDY S
Sbjct: 171 DSDLIPYGSNRILYKFDNTFVR-----EFSRSCLAEVRGKDFEENILDISILSGCDYLSS 225
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLF 284
I+G+G TA KL+ + +IE ++E + + R +P+++ + +AR+ F
Sbjct: 226 IQGVGIVTAHKLLSRERTIERVVEYL-KHRKPVPKNYLDDFFKARKTF 272
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 121/245 (49%), Gaps = 30/245 (12%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E ++K + + +VT+ D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 850 QEKLQKAKRDSDEVTETMIYDVQELLKRFGIPFITAPMEAEAQCAELLKIGLVDGIVTDD 909
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D FG + +++ + +K V + I ++ L+ D I+L +L G DY + I+
Sbjct: 910 SDCFLFGGDKVYKNMFN---QKQFVECYFKDDIATKIGLSQDNLIELALLLGSDYTEGIK 966
Query: 241 GIGGQTALKLIRQHGSIETILENINRE------------------------RYQIPEDWP 276
G+G A++++ + GS+ E +R + +P+++P
Sbjct: 967 GVGPVLAMEILAEFGSLNKFKEWFDRHTKTAEVKSNLTSLEKNLLSKVKSGKLYLPDNFP 1026
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA-IEKIKAAKN 335
+ +K PEV D ++ W P+ + + +FL+ G++ +RV + I ++
Sbjct: 1027 DRIVFEAYKRPEV--DPDKTDFVWGVPNLDQIRSFLMYNVGWSQERVDEVMIPLVRDLNK 1084
Query: 336 KSSQG 340
KS++G
Sbjct: 1085 KSAEG 1089
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 13/121 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ L ++ +A + + E+ +K+A+DAS+ IYQFL V L
Sbjct: 1 MGVQSLWDIVGPSA----RPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALQ----- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR---ADATDDLAEAVE 117
+SH+ G F R +LL G++PI+VFDG P LKKQ +A+R ++R A++T + A+ +
Sbjct: 52 -SSHIVGFFRRICKLLFFGIRPIFVFDGGVPVLKKQTIAERKNRRQQKAESTRETAQKLL 110
Query: 118 A 118
A
Sbjct: 111 A 111
>gi|171679457|ref|XP_001904675.1| hypothetical protein [Podospora anserina S mat+]
gi|170939354|emb|CAP64582.1| unnamed protein product [Podospora anserina S mat+]
Length = 719
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 132/280 (47%), Gaps = 17/280 (6%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL KS+ + + + Y G +D +++ I + G
Sbjct: 1 MGIQGLFPLL-----KSIHRTTELKKYAGETFGVDGYGWLHRGAIACA------IELAQG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T +R+ + G+ P VFDG K + + R +R + E ++A
Sbjct: 50 KPTRKYVDFAMHRVRMFKYYGVTPYLVFDGDFLPSKAKTESSREQRREQSLKTGLELLKA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G ++ + VT + LK GVP + AP EA+AQ L + G + + S
Sbjct: 110 GKPSKAHLELQKAIDVTPEMARHLIEELKKAGVPYLVAPYEADAQLVYLEREGVISGIVS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVM--EFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ED D L FGA R L MD + + + +F + + + T +F + ILSGCDY
Sbjct: 170 EDSDMLVFGAQRLLTK-MDQHGQCVEIRRKDFCLVREISLTGWTDAEFRHMAILSGCDYL 228
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
++ IG +TA +LIR+H + E I++ + E ++++PE++
Sbjct: 229 GAVNNIGLKTAYRLIRKHKTPERIIQMLKFEGKHRVPENY 268
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 794 EVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 853
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + V + + + +E L + I L L G DY + I GIG TAL+++
Sbjct: 854 KNMFNQGKF---VECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALEILT 910
Query: 253 QHGSIETILE---NINRERYQ-------------------IPEDWPYQEARRLFKEPEVV 290
+ S+E + I Y IP +P + + + EPEV
Sbjct: 911 EFSSLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTFPNPQVDKAYLEPEVD 970
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLESFF 346
+D Q W PD GL NFL++ G++ +R + I + + + +Q + +FF
Sbjct: 971 SDPSPFQ--WGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRREQEGTQSNITNFF 1028
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --SHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIA 89
>gi|19113794|ref|NP_592882.1| Fen1 family nuclease, XP-G family (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175380|sp|Q09708.1|YAGG_SCHPO RecName: Full=Uncharacterized protein C12G12.16c
gi|929887|emb|CAA90586.1| Fen1 family nuclease, XP-G family (predicted) [Schizosaccharomyces
pombe]
Length = 496
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 6/200 (3%)
Query: 92 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 151
DL+ L + K D+L +A++ E ++K +R + + Q+ + +LK++G+
Sbjct: 232 DLECLTLCLKIIKGILTLDELQKAIKLKQTE-LDKLERRLYRPSPQNIFEIFEILKILGI 290
Query: 152 PVVEAP--SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
P +P EAEA +A+ ++ YAVA++D D L G+ L + +P+ +
Sbjct: 291 PASFSPIGVEAEAFASAISQNNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMD 350
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN-RER 268
KI +ELNLT D F D C++ G D+ I IG ALKLIR +G+ +L+ +N E+
Sbjct: 351 PRKIAQELNLTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEEK 410
Query: 269 YQIPEDW--PYQEARRLFKE 286
Y IP D+ + A++LF +
Sbjct: 411 YIIPTDYIKKFLTAKKLFTD 430
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT+Q D KRLL+L+G+P +EA EAEAQCA L ++G V AV +ED D+ FGA R R
Sbjct: 763 VTEQMFADTKRLLQLLGIPYIEAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGASRVYR 822
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
H+ + S V E+E+ +I + L+ D+ I L +L G DY D + G+G A +++
Sbjct: 823 HIFEDSKY---VEEYEMNRIERNMGLSRDKLICLGLLLGSDYSDGVYGVGIVNATEIV 877
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL +LLA + + E+ GR++A+DAS+ + QF+ V TE +T
Sbjct: 1 MGVRGLWELLA----PAGQRVGIETLSGRRVAVDASIWLNQFVRAV--RDTEAMTTVR-- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK 94
+HL G+F R +LL G++ ++VFDG P LK
Sbjct: 53 -NAHLLGIFRRCCKLLYYGIEAVFVFDGGVPSLK 85
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 38/259 (14%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q LL+L G+P + AP EAEAQCA L G V + ++D D FG R +
Sbjct: 739 ITQQMISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFK 798
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F ++ + EL L I L L G DY + + G+G A++L+++
Sbjct: 799 NMFNQSKT---VECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKE 855
Query: 254 -------HGSIETILE-NINRERYQ------------------IPEDWPYQEARRLFKEP 287
H + L+ R++ + +P++WP R + P
Sbjct: 856 FPGEDGLHKFKDWWLKVQSGRDKDEENKSKFRKRFKKKYKDLYLPQEWPNAAVRDAYYHP 915
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV-------TKAIEKIKAAKNKSSQG 340
V + EE KW PD + L +FL E G+ +V + + K K A + + QG
Sbjct: 916 TVDSSEEPF--KWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQATSLNRQG 973
Query: 341 RLESFFKPVANTSAPIKRK 359
L +F + AP KR+
Sbjct: 974 NLNNFLDVAPGSHAPRKRQ 992
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L LL+ M E+ G+ +AID+S+ IYQF + L N
Sbjct: 1 MGVKSLWSLLSPVGRPVM----LETIEGKALAIDSSIWIYQFQATMRDKDGRALVN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
+H+ G R +LL G++P++VFDG P LK+ +++R K++ A
Sbjct: 53 --AHVLGFLRRICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGA 98
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 35/244 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P V AP EAEAQCA L G V + ++D D FG R
Sbjct: 1031 EVTQTMIQECQALLRLFGLPYVTAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIY 1090
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + + +E + LE E LT + I + L G DY + + G+G TAL++I
Sbjct: 1091 KNMFN----QAKFVECYLTSDLEKEFGLTRQKLIAVANLLGSDYTEGVPGVGPVTALEII 1146
Query: 252 RQHGSIETILE-----------------NINRERYQ-------IPEDWPYQEARRLFKEP 287
+ +E E N R++++ +P +P + + EP
Sbjct: 1147 SEFPDLEEFKEWWTAVQMNERPKSEDAGNSFRKKFRRNASKLFLPHGFPDKRVEMAYLEP 1206
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLE 343
EV D + Q W PD + L +FL++ G+ +R + + + N+ +Q +
Sbjct: 1207 EVDADSQAFQ--WGVPDLDKLRSFLMATIGWTQERTDEVLVPVIKDMNRRLDEGTQANIT 1264
Query: 344 SFFK 347
+FF+
Sbjct: 1265 AFFE 1268
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWQILQPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R
Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKSRR 95
>gi|328774002|gb|EGF84039.1| hypothetical protein BATDEDRAFT_7998 [Batrachochytrium
dendrobatidis JAM81]
Length = 319
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 10/251 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL D + +Y G+ + +DA + +++ +E+ N
Sbjct: 1 MGISGLLPLLKD----IHRSVHLSNYSGQAVGVDAYVWLHKGAFA---CASELCQNIP-- 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T ++ + +L + PI VFDG +K + R+ +R + E + AG
Sbjct: 52 TTKYITYCLNKVRQLQNHNIWPIIVFDGDRLPIKMRTENDRHKRREISRAKGFEYLRAGQ 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ + + V VT + + + L+ + + AP EA+AQ L K G + A+ +ED
Sbjct: 112 RDKAQDCFQTCVDVTPRMAHELIKELRANNIEYIVAPYEADAQLTYLNKIGDISAIITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D L FG + + L D I + + ++A I E + D+F +CILSGCDY +S +
Sbjct: 172 SDLLVFGCSKVILKL-DHQGNGIEIRQEDIANIKEMRFWSSDKFRHMCILSGCDYLESPQ 230
Query: 241 GIGGQTALKLI 251
GIG + ++KL+
Sbjct: 231 GIGIKKSIKLL 241
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 32/241 (13%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C++LL+L G+P V AP EAEAQCA L G V + ++D D FG R
Sbjct: 814 EVTQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 873
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + S V + + + +E L + I L G DY + I GIG TAL+++
Sbjct: 874 KNMFNQSKY---VECYLTSDMEKEYALQRRKLISFAHLLGSDYTEGISGIGPVTALEILT 930
Query: 253 QHGSIE-------------TILENINRERYQ----------IPEDWPYQEARRLFKEPEV 289
+ S+E +I + + Y+ +P +P + EPEV
Sbjct: 931 EFSSLEEFRDWWTQIQTGMSIPNDQHAAFYKKFRKTATKIFLPPSFPDARVDTAYLEPEV 990
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESF 345
+D Q W PD GL +FL++ G++ +R + I + + + +Q + SF
Sbjct: 991 DSDPSPFQ--WGVPDLHGLRDFLMTTIGWSQERTDEILVPVIRDMNRREQEGTQANITSF 1048
Query: 346 F 346
F
Sbjct: 1049 F 1049
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G+KP++VFDG P LK++ +A
Sbjct: 53 --SHVVGFFRRICKLLYFGIKPVFVFDGGAPVLKRETIA 89
>gi|116203679|ref|XP_001227650.1| hypothetical protein CHGG_09723 [Chaetomium globosum CBS 148.51]
gi|88175851|gb|EAQ83319.1| hypothetical protein CHGG_09723 [Chaetomium globosum CBS 148.51]
Length = 1331
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 17/280 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS+ + + Y G +DA +++ + + G
Sbjct: 1 MGISGLLPLL-----KSIHRPIELKKYAGETFGVDAYGWLHRGAVACA------MELAQG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T +R+ + G+ P VFDG K + A R +R + E ++A
Sbjct: 50 KPTRKYVDFAMHRVRMFKYFGVTPYLVFDGDFLPSKAKTEASRSKRREETRKAGLELLKA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G ++ + VT + LK VP V AP EA+AQ L + G + + S
Sbjct: 110 GKPSQAYVELQKAIDVTPEMARHLIEELKKADVPYVVAPYEADAQMVYLERQGLISGIVS 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYC 236
ED D L FGA R L MD I + +F + + T ++F + I SGCDY
Sbjct: 170 EDSDLLVFGAKRLLTK-MDQHGHCIEINRRDFCAVREISLTGWTDNEFRHMAIFSGCDYL 228
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
D + IG +TA +LIR+H + E I++ + + ++QIPE +
Sbjct: 229 DGVNNIGLKTAYRLIRKHKTPERIVKMLRFDGKHQIPETY 268
>gi|449303621|gb|EMC99628.1| hypothetical protein BAUCODRAFT_136211 [Baudoinia compniacensis
UAMH 10762]
Length = 730
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 141/312 (45%), Gaps = 17/312 (5%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL KS+ K ++ G+ + +DA +++ G + +
Sbjct: 1 MGIQGLLPLL-----KSIHKPTHLRNFAGQTLGVDAYGWLHR-----GTISCAIELAQQK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H+ + R L+ G+ P VFDG K +R ++R +A E + G
Sbjct: 51 PTRKHIDFVLNRVRMLIHFGVSPYLVFDGDYLPSKAHTEKERAARRKEAKRVGLELLRVG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ ++ + VT + LK +GV V AP EA++Q A L K G + + SE
Sbjct: 111 KPAQAYQELQKAIDVTPLMARELIEELKPLGVSYVVAPYEADSQLAYLEKQGIISGIVSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA L L D + + +F + + + T +F + +LSGCDY
Sbjct: 171 DSDLLVFGAKCLLTKL-DQYGECVMIRRQDFTSCREVSLVGWTDREFRMMSMLSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
I G+G +TA +L+R+H +IE + + + + ++P + + A R F V E
Sbjct: 230 GIEGLGVKTAYRLVRKHKAIEPAVRMLQFDGKKKVPPGYLEAFSRAERTFLYQWVFCPEA 289
Query: 295 QLQIKWSAPDEE 306
Q + +AP E
Sbjct: 290 QRLVNLNAPPAE 301
>gi|363731591|ref|XP_419550.3| PREDICTED: exonuclease 1 [Gallus gallus]
Length = 798
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 19/257 (7%)
Query: 1 MGIKGLTKLLADNA-PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL + + + A P +K+ Y G+ +A+DA Y +L E L G
Sbjct: 1 MGIQGLLQFIKEAAEPAHVKK-----YRGQAVAVDA----YCWLHKGSYGCAEKLAR--G 49
Query: 60 EVTSHLQGMFTRTI-RLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVE 117
E T H + + LL G+KP+ VFDG P K+ E A+R ++A+ E
Sbjct: 50 EPTDHYVVFCMKLVDMLLSFGIKPVLVFDGCTLPSKKEVEKARREKRQANLLKGKQLFRE 109
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
E + F+ R+V VT + + + GV + AP EA+AQ A L K+G V A+
Sbjct: 110 GKLSEARDCFA-RSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAII 168
Query: 178 SEDMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDY 235
+ED D L FG + FL+ +D + + + + + N+ T ++F +CILSGCDY
Sbjct: 169 TEDSDLLAFGCKKVFLK--IDKFGNGLEIDQARLGNCKQLGNIFTEEKFRYMCILSGCDY 226
Query: 236 CDSIRGIGGQTALKLIR 252
SI GIG A KL++
Sbjct: 227 LSSIHGIGLAKACKLLK 243
>gi|150866513|ref|XP_001386143.2| 5'-3' exonuclease [Scheffersomyces stipitis CBS 6054]
gi|149387769|gb|ABN68114.2| 5'-3' exonuclease [Scheffersomyces stipitis CBS 6054]
Length = 676
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 128/278 (46%), Gaps = 13/278 (4%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ GL L + P ++ E Y G+ +AID +++ LI + E L E
Sbjct: 1 MGVTGLLPCLKEIQNPGTL-----EQYRGKTLAIDTYGWLHRALI----SCAEELCLER- 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++ + R L G++P +VFDG K + +R KR +A E +AG
Sbjct: 51 PTRKYITSILKRVDMLRHFGVEPYFVFDGAALPTKAETANERRVKRQEARKKAEEYSKAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ K + VT Q L G+ + AP EA+ Q L K G V + SE
Sbjct: 111 KRSLAWKEYMKAASVTSQMAKSVMVELDARGIKYIVAPYEADPQMVYLEKIGLVDGILSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSR-KIPVMEFEVAKILEELN-LTMDQFIDLCILSGCDYCD 237
D D L FG R + L D + +I +F K + L+ + +Q + +LSGCDY +
Sbjct: 171 DSDLLIFGCNRLITKLKDDGTLVEICRQDFHKVKSIPYLSKFSQEQLRLIAMLSGCDYTN 230
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
I+GIG +TA L+++H +E I+ + E I E +
Sbjct: 231 GIQGIGIKTAFNLVQKHAKLERIVAVLRAEGKPIDEGF 268
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 33/254 (12%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E ++K + + +VT+ +D + LL+ G+P + AP EAEAQCA L K G V + ++D
Sbjct: 701 QEKLQKAKRDSDEVTETMINDVQELLRRFGIPYITAPMEAEAQCAELLKIGLVDGIITDD 760
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D L FG +++ ++K V + I ++ L+ D+ I+L +L G DY + I+
Sbjct: 761 SDCLLFGGDHVYKNMF---NQKQYVECYIKDDIEAKVGLSRDKLIELALLLGSDYTEGIK 817
Query: 241 GIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDWP 276
GIG A++++ + S+E ++L I + +P+ +P
Sbjct: 818 GIGPVLAMEILAEFESLEGFKDWFDDNTKTVKSNNDLNALRKSLLTRIKNGKLYLPDSFP 877
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIKA 332
+ R + PEV D ++ + KW P+ + + +FL+ ++ +RV + I +
Sbjct: 878 DEAVSRAYLYPEV--DSDKTEFKWGVPNLDQIRSFLMFNVDWSQERVDEVMIPLIRDMNR 935
Query: 333 AKNKSSQGRLESFF 346
K +Q + FF
Sbjct: 936 KKADGTQSTIGEFF 949
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAG 59
MG+ L ++ A + + E+ +K+A+DAS+ IYQFL V + G +
Sbjct: 1 MGVHSLWDIVGPTA----RPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNSL------ 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+SH+ G F R +LL G+ PI+VFDG P LK++ + R ++R
Sbjct: 51 -PSSHIIGFFRRICKLLYFGILPIFVFDGGVPVLKRETINARKNRR 95
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 1143
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LLKL G+P V AP EAEAQCA L G V + ++D D FG R +++ + +
Sbjct: 819 ECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMFNQAK 878
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 258
+E +A LE E +L + I L G DY + I GIG TAL+++ + +E
Sbjct: 879 ----FVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFPGLEE 934
Query: 259 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
TI ++ + R++++ +P +P + + EPEV D
Sbjct: 935 FRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAFPDKRVDIAYLEPEVDPDPSAF 994
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 346
Q W PD E L FL+S G++S+R + I + + + +Q + FF
Sbjct: 995 Q--WGVPDLEALRQFLMSTVGWSSERTDEVLVPVIRDVNRRELEGTQANITQFF 1046
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHVVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTIA 89
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LLKL G+P V AP EAEAQCA L G V + ++D D FG R +++ + +
Sbjct: 819 ECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMFNQAK 878
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 258
+E +A LE E +L + I L G DY + I GIG TAL+++ + +E
Sbjct: 879 ----FVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFPGLEE 934
Query: 259 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
TI ++ + R++++ +P +P + + EPEV D
Sbjct: 935 FRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAFPDKRVDIAYLEPEVDPDPSAF 994
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 346
Q W PD E L FL+S G++S+R + I + + + +Q + FF
Sbjct: 995 Q--WGVPDLEALRQFLMSTVGWSSERTDEVLVPVIRDVNRRELEGTQANITQFF 1046
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHVVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTIA 89
>gi|366999787|ref|XP_003684629.1| hypothetical protein TPHA_0C00380 [Tetrapisispora phaffii CBS 4417]
gi|357522926|emb|CCE62195.1| hypothetical protein TPHA_0C00380 [Tetrapisispora phaffii CBS 4417]
Length = 784
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 123/282 (43%), Gaps = 37/282 (13%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL L + P S+ Y G +AID Y +L + L G
Sbjct: 1 MGIQGLLPQLKNIQNPVSLNR-----YSGETLAIDG----YAWLHRATFSCAHDLV--LG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
T F + +L++ ++P VFDG +KKQ KR KR + + +
Sbjct: 50 NPTDKYLQFFIKKFAMLKSYNIQPYLVFDGNSLPVKKQTEVKRKEKRTENRSIAIKLWNS 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G + + ++ +++V VT + KL G+ V AP EA+ Q L K V+ + S
Sbjct: 110 GERRNAMEYFQKSVDVTPEMAKCVIDYCKLHGIKYVVAPYEADPQLVYLEKHKIVHGIIS 169
Query: 179 EDMDSLTFGAPRFLRHLMD-------------PSSRKIPVMEFEVAKILEELNLTMDQFI 225
ED D L FG + + L D +K P+ E LT DQ
Sbjct: 170 EDSDLLVFGCRKLITKLNDFGECIEICRDNFNQVPKKFPIYE-----------LTDDQIR 218
Query: 226 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267
+ LSGCDY D I IG A+KL+RQH +++ I+ + RE
Sbjct: 219 VMVCLSGCDYTDGILKIGLIRAIKLVRQHKTMDKIILALQRE 260
>gi|67525155|ref|XP_660639.1| hypothetical protein AN3035.2 [Aspergillus nidulans FGSC A4]
gi|40744430|gb|EAA63606.1| hypothetical protein AN3035.2 [Aspergillus nidulans FGSC A4]
gi|259486018|tpe|CBF83526.1| TPA: 5'-3' exonuclease and flap-endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 761
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 141/311 (45%), Gaps = 17/311 (5%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL KS+ K + + G+ + +DA +++ + +++ +
Sbjct: 1 MGIKGLHGLL-----KSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACA---VDLVLDRP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + +R LL G+KP VFDG K R +R ++ E G
Sbjct: 52 -TTKHIDFVLSRVRMLLFFGVKPYLVFDGDNLPSKSGTELDRQQRRHESKTLGMELYRKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT LK + + V AP EA+AQ L K G + + SE
Sbjct: 111 RTAEAYQELQKAVDVTPLMARQLIEELKKLDIQYVVAPYEADAQLVYLEKHGFIDGIISE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA R L L D I + +F + + + T F +CI+SGCDY
Sbjct: 171 DSDLLVFGAKRLLSKL-DQHGELIEINRADFTACREVSFVGWTDADFRRMCIMSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
+I +G +TA + IR++ S+E L + E Y +P D+ + +A F V +
Sbjct: 230 NIARVGLKTAYRSIRKYKSVEKALRMLQFEGPYHVPADYLQSFMQAELTFLYQRVFCPKS 289
Query: 295 QLQIKWSAPDE 305
+ ++PD+
Sbjct: 290 GKLVPLTSPDD 300
>gi|449459386|ref|XP_004147427.1| PREDICTED: exonuclease 1-like [Cucumis sativus]
Length = 685
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 136/283 (48%), Gaps = 24/283 (8%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL P +K+ + G +AID Y +L ++ L N G
Sbjct: 1 MGIQGLLPLLKSIMLPIHIKDLE-----GSSVAIDT----YSWLHKGAFCCSKELCN--G 49
Query: 60 EVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
TS H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 50 LPTSKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTRK---ENLARATEH 106
Query: 119 ---GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
GN + ++ V +T + ++LK V V AP EA+AQ L S QV A
Sbjct: 107 EMNGNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDA 166
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSG 232
V +ED D + FG PR + MD + + +++ + ++LN T +++CILSG
Sbjct: 167 VLTEDSDLIPFGCPRII-FKMDKFGQGVE-FRYDMLQKNKDLNFSGFTKQMILEMCILSG 224
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
CDY S+ G+G + A LI++ S E ++ ++ +P +
Sbjct: 225 CDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHLY 267
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 30/254 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ L ++L Q S G+ +A+D S+ + + T+ + G
Sbjct: 1 MGVTNLWQVLE----PVQAHQTLSSLKGQTLAVDLSIWVCE---------TQCVKQMQGV 47
Query: 61 VTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
V+ +L+ +F R LL+ G+ ++V +G+ PDLK+Q +AKR R + + G
Sbjct: 48 VSKPYLRNLFFRISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGG 107
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+R + +C +L +GVP V +P EAEA CAAL SG V A +
Sbjct: 108 ---------RRNFNACLK---ECCEMLDYLGVPYVHSPGEAEATCAALNASGVVDACLTN 155
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
D D+ +GA R+ + K P +E + + + E L L+ ++ + + +L GCDY
Sbjct: 156 DGDAFLYGARTVYRNFT--MNTKDPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPK 213
Query: 238 SIRGIGGQTALKLI 251
+ G+G + A+K++
Sbjct: 214 GVPGVGVERAIKMM 227
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus heterostrophus
C5]
Length = 1297
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 142/312 (45%), Gaps = 39/312 (12%)
Query: 96 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 155
QEL+ + R D ++L + + A K+D + +VT+ +C++LL L G+P +
Sbjct: 904 QELSNNTATRVDFDEELKQ-LRAQQKKD----RRDADEVTQTMISECQQLLTLFGLPYIT 958
Query: 156 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 215
AP EAEAQCA L G V + ++D D+ FG R +++ + + V + + +
Sbjct: 959 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAKF---VECYLSSDLTS 1015
Query: 216 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR---------------QHGSIETI 260
E +LT + ID+ L G DY + + GIG TAL+++ Q+G+I+
Sbjct: 1016 EFSLTRQKLIDIAQLLGSDYTEGLPGIGPVTALEILSEFQDLTSFRKWWDGVQNGTIKKS 1075
Query: 261 --LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310
++ R+R++ +P +P + PEV + E Q W PD L
Sbjct: 1076 DDAQSSFRKRFRKNQATKLFLPTSFPDPRVAEAYLHPEVDSSPEPFQ--WGVPDLAALRA 1133
Query: 311 FLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPK 366
+L S+ G++++R + I + + + +Q + FF+ A R
Sbjct: 1134 YLSSQIGWSTERTDEVLVPVIRDMNRREKEGTQANITRFFEGSVGAGAFAPRVRGAEGSG 1193
Query: 367 ATTNKKSKAGGG 378
+ +K KA G
Sbjct: 1194 PSGKRKGKAAAG 1205
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +L A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVLQPCA----RPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R DD
Sbjct: 53 --SHIVGFFRRVCKLLFIGIKPVFVFDGGAPALKRQTIRHRKSRREGRRDD 101
>gi|347972009|ref|XP_313789.5| AGAP004491-PA [Anopheles gambiae str. PEST]
gi|333469129|gb|EAA09057.6| AGAP004491-PA [Anopheles gambiae str. PEST]
Length = 861
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 132/316 (41%), Gaps = 18/316 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL L K+ G+ +AID +++ G G
Sbjct: 1 MGITGLLPFLE----KASSACHLRELRGKCVAIDTYCWLHR-----GAFGCAERLARGDS 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
H+Q LL +KPI VFDGQ K AKR R A AE + G
Sbjct: 52 TDMHIQYCLKYVQLLLSHNIKPILVFDGQHLPAKAATEAKRREIRETARKRGAELLRLGR 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ F +R V +T + + + GV + AP EA+AQ A L ++ V +ED
Sbjct: 112 IDEARSFLRRCVDITHEMALQLMQECRKRGVDCIVAPYEADAQLAYLNRTDIAQYVITED 171
Query: 181 MDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D + FG R L L + R + + +A E +F +CILSGCDY DS+
Sbjct: 172 SDLVLFGCNRILFKLDLTGHGRLVEASKLHLAMGCREDRYKFAKFRYMCILSGCDYLDSL 231
Query: 240 RGIGGQTALKLIRQ------HGSIETILENINRERYQIPEDWP--YQEARRLFKEPEVVT 291
GIG A K + + ++ I +N + + E++ + +A FK V
Sbjct: 232 PGIGLGKACKFMLKTEDPDIRRALAKIPAYLNMRQLSVTEEYKDEFLKADATFKHMVVYD 291
Query: 292 DEEQLQIKWSAPDEEG 307
++ Q + PD+EG
Sbjct: 292 PVQRRQTRLVDPDDEG 307
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 53/293 (18%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
++T Q +L+L G+P + AP EAEAQCA L + G V + ++D D FG R L
Sbjct: 722 EITHQMVAQIMTMLRLFGIPYITAPMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVL 781
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + S V F + + EL L D I L L G DY + + G+G A++L++
Sbjct: 782 KNMFNQSKT---VECFLLPDLARELGLDRDTLIRLAYLLGSDYTEGLPGVGPVVAMELLK 838
Query: 253 QHGSIETILE--------NINRER-------------------YQIPEDWPYQEARRLFK 285
+ + + + + R+R + +DWP R +
Sbjct: 839 EFQGEDGLHKFKDWWRKVQMGRDREADTSTKFRKRFKKRFKDVLHLNDDWPNGAVRDAYY 898
Query: 286 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI---------KAAKNK 336
P V DE + KW PD + L FL E G+ +V + + I AA+N+
Sbjct: 899 HPTV--DESEEPFKWGLPDLDALRGFLYDELGWGQTKVDELLLPIIHKVTKRGQAAARNQ 956
Query: 337 SSQGRLESFFKPVANTSAPIKRKEPENTPK---------ATTNKKSKAGGGGG 380
QG L F ++ T + RK K T + +AGGG G
Sbjct: 957 --QGTLNEFLD-ISGTGSHAPRKRQAYASKRLQQVVSEFRTEQARRRAGGGSG 1006
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 18/112 (16%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV----GRTGTEMLTN 56
MG+K L +LL M E+ G+ +AID+S+ IYQF + GR
Sbjct: 1 MGVKSLWELLTPVGRPVM----LETMEGKAMAIDSSIWIYQFQATMRDKEGR-------- 48
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 108
G V +H+ G R +L+ G+KP++VFDG P LK+ L +R +K+ A
Sbjct: 49 --GLVNAHVVGFLRRICKLMYYGIKPVFVFDGGAPALKRSTLTERKNKKNGA 98
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 40/261 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
+T+Q LL+L G+P + AP EAEAQCA L G V V ++D D FG+ R +
Sbjct: 880 ITQQMISQIMVLLRLFGIPYITAPMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFK 939
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F + EL L D+ I L L G DY D + G+G A++++ +
Sbjct: 940 NMFNQSKT---VECFIAGDLTRELGLDRDKLIRLAYLLGSDYVDGLPGVGPVVAMEILEE 996
Query: 254 --------------------------HGSIETILENINRERYQIPEDWPYQEARRLFKEP 287
+ S + + +DWP R + P
Sbjct: 997 FPGADGLHKFREWWVKVQSGKDKPEDNQSAFRKRFKKKFKSLHLEDDWPNAVVRDAYYHP 1056
Query: 288 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-------KAAKNKSSQG 340
V DE KW PD + L +FL E G+ D+V + I + + + QG
Sbjct: 1057 TV--DESDEPFKWGLPDLDALQHFLGQELGWGQDKVDDLLLPIIHRMGQRGQSASVTKQG 1114
Query: 341 RLESFFKPV--ANTSAPIKRK 359
L S+F A T AP K++
Sbjct: 1115 TLTSYFDVSVGAGTYAPRKKQ 1135
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 10/106 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL KL+ + E+ G+ +AID+S+ +YQF + L N
Sbjct: 1 MGVKGLWKLVGPVGRPVL----LETVEGKTMAIDSSIWLYQFQATMRDKDGRALVN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRA 106
+H+ G R +LL G+KP++VFDG P +KK + +R +++
Sbjct: 53 --AHILGFLRRICKLLFYGIKPVFVFDGGAPAIKKATITERKKRKS 96
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 34/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 795 ECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 854
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 258
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 855 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 910
Query: 259 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
I ++I+ R++++ +P +P + + + EPEV D +
Sbjct: 911 FRDWWSEIQLGNKIPDDIHAGFRKKFKKNVTKLFLPPGFPDKAVEKAYLEPEV--DPDPS 968
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
+ KW PD + + FL++ G++ +R + I + + + +Q + FF+
Sbjct: 969 EFKWGVPDLDAVRQFLMTTIGWSPERTDEVLVPVIRDVNRREQEGTQSNITGFFQ 1023
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIA 89
>gi|378732295|gb|EHY58754.1| exonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 774
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 15/289 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL +L KS++ + + G+ I +DA +++ G G
Sbjct: 1 MGIKGLLPML-----KSIQTHCTLKKFAGQTIGVDAYGWLHR-----GVVGCAFALALEK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + +R LL+ G+ P VFDG K A R KR +A E +AG
Sbjct: 51 PTTIHIDFVLSRVRMLLDFGVTPYLVFDGDNIPSKAGTNASRRKKREEAKALGLELHKAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ ++ V VT LK + V V AP EA+AQ L + G + + SE
Sbjct: 111 KTSQAHQELQKAVDVTPHMARQLIEELKKLNVQFVVAPYEADAQLVYLEQKGIIDGILSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSR-KIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FGA R L L ++ F + K + T F+ + ILSGCDY +
Sbjct: 171 DSDLLVFGAKRLLTKLNQYGELVEVERANFALCKEISLAGWTDSMFMRMAILSGCDYLPN 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLF 284
I +G +TA +R++ +E IL + E + +P+ + +Q+A F
Sbjct: 231 IGKMGLKTAHSYVRKYKDVEKILRMVQLEGKMVVPDKYMERFQQAELTF 279
>gi|255639461|gb|ACU20025.1| unknown [Glycine max]
Length = 287
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 29/288 (10%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+G LL P +K+ K G +A+D +++ G +
Sbjct: 1 MGIQGFLPLLKSIMVPIHIKDLK-----GCSVAVDTYSWLHK-----GALSCSTELCKGM 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
T H++ R L G KPI VFDG +K ++ KR R D+LA AVE
Sbjct: 51 PTTRHIEYCMHRVNLLRHFGDKPILVFDGGLLPMKSEQENKRARAR---KDNLARAVEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + ++ V ++ Q + ++LK + + AP EA+AQ L SGQV AV
Sbjct: 108 SDGNLAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAV 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG PR + MD + + +F+ + + + L+ + F +++CILS
Sbjct: 168 ITEDSDLIPFGCPRIIFK-MDKFGQGV---QFQDSMLQKNKELSFEGFNRQMLLEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE 279
GCDY S+ G+G + A I++ S + +L+++ +P P+ E
Sbjct: 224 GCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP---PFYE 268
>gi|238484551|ref|XP_002373514.1| exonuclease, putative [Aspergillus flavus NRRL3357]
gi|220701564|gb|EED57902.1| exonuclease, putative [Aspergillus flavus NRRL3357]
Length = 746
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 15/311 (4%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL KS+ K + + G+ + +DA +++ + +++ +
Sbjct: 1 MGIKGLHGLL-----KSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACA---VDLVLDRP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + R LL G+ P +FDG K + R+ +R ++ E G
Sbjct: 52 -TTKHVDFVLNRVRMLLYFGVTPYLIFDGDNLPSKAGTESDRHQRRQESKTLGLELQRKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT LK M V V AP EA+AQ L + G + + SE
Sbjct: 111 RTAEAYQEFQKAVDVTPLMARQLIDELKKMNVQYVVAPYEADAQLVYLERQGIINGIISE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FGA R L L +I +F + + + T F +CILSGCDY +
Sbjct: 171 DSDLLVFGAKRLLSKLDQHGDCIEINRADFTACREVSLIGWTDADFRRMCILSGCDYLPN 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQ 295
I +G +TA + IR++ ++E L + E +Y +P ++ +++A F V +
Sbjct: 231 IARLGLKTAYRCIRKYRNVEKALRMLQFEGQYHVPTNYLENFKQAELTFLYQRVFCPQAG 290
Query: 296 LQIKWSAPDEE 306
+ +AP+++
Sbjct: 291 KLVTLTAPEDD 301
>gi|320591287|gb|EFX03726.1| exodeoxyribonuclease 1 [Grosmannia clavigera kw1407]
Length = 805
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 15/279 (5%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS+ + + + + G A+DA +++ G M +
Sbjct: 1 MGISGLLPLL-----KSIQRPTELKKFSGETFAVDAYGWLHR-----GAISCAMELAQGK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
++ R + G+ P VFDG K A R +R ++ ++AG
Sbjct: 51 PTRKYVDSFLNRVRMVQHFGVIPYLVFDGDFLPSKAATEASRAKRREESRKAGEALIKAG 110
Query: 120 N-KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
N K+ +F K + +T + LK +G+P + AP EA+AQ L + G V + S
Sbjct: 111 NTKQAFLEFQK-AIDITPEMACHVIEELKKLGLPYIVAPYEADAQMVYLEREGLVSGILS 169
Query: 179 EDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
ED D L FGA R L + M +I +F + + + T +F + ILSGCDY +
Sbjct: 170 EDSDLLVFGAKRLLTKMDMQGHCIEINRRDFCACREISLTDWTDREFRHMAILSGCDYLE 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
I +G +TA ++IR+H ++E ++ + + ++++ E++
Sbjct: 230 GIGNLGLKTAYRMIRKHKTVEKVVRMLQFDGKFRVHENY 268
>gi|302789395|ref|XP_002976466.1| hypothetical protein SELMODRAFT_175620 [Selaginella moellendorffii]
gi|302824817|ref|XP_002994048.1| hypothetical protein SELMODRAFT_138122 [Selaginella moellendorffii]
gi|300138102|gb|EFJ04882.1| hypothetical protein SELMODRAFT_138122 [Selaginella moellendorffii]
gi|300156096|gb|EFJ22726.1| hypothetical protein SELMODRAFT_175620 [Selaginella moellendorffii]
Length = 401
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 134/282 (47%), Gaps = 22/282 (7%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL L ++KE Y G ++A+D Y +L + ++ + + G
Sbjct: 1 MGIQGLLPALKSITTSTNVKE-----YSGMRVAVDT----YSWLHKAAFSCSKDICD--G 49
Query: 60 EVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
T+ + LL G+KP+ VFDG +K ++ KR R + E +
Sbjct: 50 RATASFLNYCMHRVNLLRHHGIKPLLVFDGGSLPMKAEQEEKRSRAREEHLKLARECEAS 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
GN ++ V +T + +L+ V + +P EA+AQ A L G V AV +
Sbjct: 110 GNHAAAYDHYQKAVDITPEVAHQLILVLRRENVEYIVSPYEADAQMAFLALRGVVDAVIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGC 233
ED D + +G P+ L MD + + E + A +++ +L + F +++CILSGC
Sbjct: 170 EDSDLVAYGCPKILFK-MDKNGQGF---ELQYADLVKNRDLNLTSFTKRMMLEMCILSGC 225
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
DY S++G+G + A LIR+ S E ++ ++ IP+ +
Sbjct: 226 DYLPSLQGMGVKRAHNLIRRFRSYEKVIRHLKFSGVMIPKSY 267
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 32/241 (13%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 803 EVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 862
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + S V + A + +E L + I L G DY + I GIG TAL+++
Sbjct: 863 KNMFNQSKY---VECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALEILT 919
Query: 253 QHGSIETI------------LENINRERYQ-----------IPEDWPYQEARRLFKEPEV 289
+ S+E + N + + +P +P + EPE
Sbjct: 920 EFSSLEEFRDWWTQVQTGADMSNSSHAAFYKKFRKQATKIFLPPTFPDARVDAAYLEPEA 979
Query: 290 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESF 345
D Q W PD GL NFL++ G++ +R + I I + + +Q + SF
Sbjct: 980 DRDPSPFQ--WGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDINQREQEGTQSNITSF 1037
Query: 346 F 346
F
Sbjct: 1038 F 1038
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVQGLWTIVQPCA----RPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --SHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIA 89
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 794 EVTQVMITECQQLLSLFGLPYIIAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 853
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + V + + + +E L + I L L G DY + I GIG TAL+++
Sbjct: 854 KNMFNQGKF---VECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALEILT 910
Query: 253 QHGSIETILE---NINRERYQ-------------------IPEDWPYQEARRLFKEPEVV 290
+ S+E + I Y IP +P + + + EPEV
Sbjct: 911 EFSSLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTFPNPQVDKAYLEPEVD 970
Query: 291 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLESFF 346
+D Q W PD GL NFL++ G++ +R + I + + + +Q + +FF
Sbjct: 971 SDPSPFQ--WGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRREQEGTQSNITNFF 1028
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --SHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIA 89
>gi|449680108|ref|XP_002160163.2| PREDICTED: exonuclease 1-like [Hydra magnipapillata]
Length = 687
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 144/311 (46%), Gaps = 15/311 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL D K+ S+ G+ + IDA +++ G G
Sbjct: 1 MGILGLLPLLKDIQVKT----SISSFKGQTVGIDAYCWLHK-----GTYGCAKDVVLGQP 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
++Q + R L+ + PI VFDG K ++ +R KR + EA+ GN
Sbjct: 52 TKVYIQYVMRRVNMLINYDITPILVFDGGHLPAKSEKEKERREKRIEYRARALEALRNGN 111
Query: 121 -KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
KE E F K +T + + + M V + AP EA+AQ A L KSG SE
Sbjct: 112 SKEAFESFQK-CCDITPEMAANVIQACFEMNVQCIVAPYEADAQLAFLMKSGITQLTISE 170
Query: 180 DMDSLTFGAPRFLRHLM-DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L +G + L + + + + + ++ + T+D F +C+LSGCDY S
Sbjct: 171 DSDLLLYGCNKVLYKMSSEGDGMLVDIDNLSKVRSVQLSSFTLDNFRQMCMLSGCDYLPS 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENIN-RERYQIPEDWP--YQEARRLFKEPEVVTDEEQ 295
I+G+G + A + +++H +I+ + + +Y +P+++ + +A +FK V +
Sbjct: 231 IKGMGLKKAHQALKRHSNIKQCIRSFKCNPQYSVPDEYEDNFCKAELVFKYQLVFDPIRK 290
Query: 296 LQIKWSAPDEE 306
+ + PDEE
Sbjct: 291 CIVPLNEPDEE 301
>gi|403340704|gb|EJY69645.1| XPG family protein [Oxytricha trifallax]
Length = 666
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 20/234 (8%)
Query: 67 GMFTRTIRLLE----AGMKPIYVFDGQPPDLKKQ-ELAKRYSKRADATDDLAEAVEAGNK 121
G + I++L+ G+KPI VFDG P D K + E ++ SK+ + L A E G
Sbjct: 23 GFLSYPIKMLKLVQYYGIKPICVFDGMPLDAKMETEQGRKDSKKTNKDLALRFARE-GKV 81
Query: 122 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 181
E+ +K R++++ + D +LK++ + ++AP EA+AQ A L + G SED
Sbjct: 82 EEAKKHFMRSLQLRSKMIDLLMDVLKVLDIEFIKAPYEADAQIAYLVREGIADIAISEDS 141
Query: 182 DSLTFGAPRFLRHL----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 231
D + FG PR L L D + + + + K L++ N QF+ +CI+
Sbjct: 142 DLIAFGCPRLLMKLDFRGICQVFDADDFIQNNKITDASL-KFLQKAN--RKQFVSICIMG 198
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 285
GCDY SI+ +G + A+K ++H +IE ++E + R ++ P+ L K
Sbjct: 199 GCDYLPSIQKVGLKIAVKFFQKHETIEKVIEAM-RANSTYTQNVPFNYVEALLK 251
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 700 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 759
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + I L G DY + I GIG TAL+++ + S+E
Sbjct: 760 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSSLEE 815
Query: 260 ILENIN----------------RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ + R++++ +P +P + + + EPEV +D +
Sbjct: 816 FRDWWSQVQLGNKIPDDTHAAFRKKFKKNLTKLFLPPGFPDKAVEKAYLEPEVDSDPSEF 875
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
KW PD + + FL++ G++ +R + I + + + +Q + FF+
Sbjct: 876 --KWGVPDLDAVRQFLMATIGWSPERTDEVLVPVIRDVNRREQEGTQSNITGFFQ 928
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 22/203 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE------ 114
+H+ G F R +LL G+KP++VFDG P LK+Q +A R +R +D A
Sbjct: 53 --AHIVGFFRRICKLLFFGIKPVFVFDGGAPVLKRQTIANRKRRREGRREDAARTASKLL 110
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
A++ + + E +RT +H + ++L + S+AE Q + Y
Sbjct: 111 AIQIQRQAEEEAAKRRT---KPRHEPEEEQLPDELIYAEETLMSKAERQRNRQFRKTDAY 167
Query: 175 AVASEDMDSLTFGA---PRFLRH 194
+ DM GA PR + H
Sbjct: 168 HLPELDMSLAEMGAPNDPRIMSH 190
>gi|403179055|ref|XP_003337407.2| hypothetical protein PGTG_19001 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164590|gb|EFP92988.2| hypothetical protein PGTG_19001 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 685
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 18/263 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA-- 58
MGI+GL L +E +++ G+ +AID + +++ G E
Sbjct: 1 MGIQGLLPFLR----SIQRESHLKNWAGKTLAIDGYVWLHR--------GAYHCAQELCL 48
Query: 59 GEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
G T+ F + I LL G+ VFDG KK R ++R A + + +
Sbjct: 49 GNPTTKHVDYFVQKIHLLHRFGVSAYVVFDGDHLPSKKVTEDDRENRRRTALANAQKLLA 108
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
G+++ + + V VT + D L+ MGV V AP EA+AQ L G+V+ +
Sbjct: 109 QGDQKRAREEFVKAVDVTPRLAHDVILALRSMGVKYVVAPYEADAQLRYLEMKGEVHGII 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMD--QFIDLCILSGCDY 235
+ED D L +GA R + MDPS I + E+ ++ ++ D QF + +LSGCDY
Sbjct: 169 TEDSDLLVYGA-RNVLFKMDPSGHCIHICRDELGQVHDKRMGLWDERQFRQMAMLSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIE 258
SI G+G + A LIR+H + E
Sbjct: 228 LSSIPGLGIKKAHDLIRRHQTAE 250
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 111/260 (42%), Gaps = 39/260 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT+Q +L+L G+P + AP EAEAQCA L V V ++D D FGA R +
Sbjct: 758 VTQQMVAQIMIMLRLFGIPYMTAPMEAEAQCATLVSLNLVDGVITDDSDVFLFGAARVFK 817
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F A + EL L I L L G DY + + G+G A++L+R+
Sbjct: 818 NMFNQSKT---VECFLAADLQRELGLDRGVLIRLAYLLGSDYTEGLPGVGPVMAMELLRE 874
Query: 254 ---HGSIETILENINRER----------------------YQIPEDWPYQEARRLFKEPE 288
+E E R + +P DWP R + P
Sbjct: 875 FPGEDGLERFREWWGRVQMGRDGEESNTPFRRRFKKKFKDLYLPPDWPNGAVRDAYLHPT 934
Query: 289 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA-------AKNKSSQGR 341
V DE + KW PD +GL F E G++ +V + + I + A+ + QG
Sbjct: 935 V--DESEEPFKWGLPDLDGLREFFNGELGWSQHKVDEILLPIISKMGKRGQAQTTNKQGT 992
Query: 342 LESFFKPV--ANTSAPIKRK 359
L SF T AP KR+
Sbjct: 993 LNSFLDVSLGTGTHAPRKRQ 1012
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +LLA + + E+ G+ +AID+S+ IYQF + +L N
Sbjct: 1 MGVKSLWQLLAPVG----RPVQLENMEGKTMAIDSSIWIYQFQATMRDKEGRVLVN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATD 110
+H+ G R +LL G+KP++VFDG P LK+ L +R ++ DAT+
Sbjct: 53 --AHVLGFLRRITKLLFYGIKPVFVFDGGAPALKRNTLNQRRERKTDATE 100
>gi|213404598|ref|XP_002173071.1| exonuclease I Exo1 [Schizosaccharomyces japonicus yFS275]
gi|212001118|gb|EEB06778.1| exonuclease I Exo1 [Schizosaccharomyces japonicus yFS275]
Length = 566
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 21/303 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL LL D K E + G+ + +DA + +++ + + E+ N E
Sbjct: 1 MGVKGLLGLLKD----IQKPSHIEEFSGKTLGVDAYVWLHKGVFACAK---ELAFNI--E 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
++Q R L G+KP VFDG P K KR ++R +A + + G
Sbjct: 52 TDKYIQYAMHRISMLTYYGVKPFVVFDGGPLPSKLGTEEKRRARRKEALELGKKLWNEGK 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ R++ VT + + L+ +P V AP EA+ Q L K+G + + +ED
Sbjct: 112 RSQAMMHLSRSIDVTPEMANRFAMTLRQNNIPFVVAPYEADPQLVYLEKTGFIDGIITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFID-----LCILSGCDY 235
D L FGA L L + + + V ++ ++ N+++ F D L I SGCDY
Sbjct: 172 SDMLIFGARTVLFKLDNFGNCDV-VRREDIPRL---PNMSLQGFNDHMLRYLAIFSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRER-YQIPEDW--PYQEARRLFKEPEVVTD 292
D I GIG + A++ I++ + + + ER +P D+ + A + F+ V
Sbjct: 228 TDGIGGIGLKKAIRFIQRFPKPDAAIRAMRAERSLNVPIDFEHTFTLADKAFQHQRVYCP 287
Query: 293 EEQ 295
++Q
Sbjct: 288 QQQ 290
>gi|47087335|ref|NP_998634.1| exonuclease 1 [Danio rerio]
gi|82177106|sp|Q803U7.1|EXO1_DANRE RecName: Full=Exonuclease 1; AltName: Full=Exonuclease I
gi|28278337|gb|AAH44187.1| Zgc:55521 [Danio rerio]
Length = 806
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 125/255 (49%), Gaps = 15/255 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL + + D A + M +K Y G+ +A+D Y +L + E L GE
Sbjct: 1 MGIQGLLQFIKD-ASEPMHVKK---YRGQTVAVDT----YCWLHKGAFSCAEKLAK--GE 50
Query: 61 VTSHLQGMFTRTI-RLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVEA 118
T + + LL G+KPI VFDG+ P ++ E ++R ++A+ E
Sbjct: 51 PTDQYVSYCMKFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREG 110
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
E E F+ R+V +T D R + GV V AP EA+AQ A L KS AV +
Sbjct: 111 KITEARECFT-RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVIT 169
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDYCD 237
ED D L FG + + MD + + + + + N+ T ++F +CILSGCDY
Sbjct: 170 EDSDLLAFGCKKVILK-MDKQGNGLEIEQCHLGRCKSLGNIFTEEKFRYMCILSGCDYLQ 228
Query: 238 SIRGIGGQTALKLIR 252
S+ GIG A KL+R
Sbjct: 229 SLYGIGLGKACKLLR 243
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 919 EVTQTMIAECQQLLSLFGLPYITAPMEAEAQCAELVDLGLVDGIVTDDSDIFLFGGTRVY 978
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + + +E +++ LE E LT + I + L G DY + I G+G TAL+++
Sbjct: 979 KNMFN----QAKFVECYLSQDLESEFGLTRRKLIAIAQLLGSDYTEGIPGVGPVTALEIL 1034
Query: 252 RQHGSIETI-------------------------LENINRERYQIPEDWPYQEARRLFKE 286
+ G +E+ N + +P ++P Q + +
Sbjct: 1035 SEFGDLESFRDWWRDVQSGTRPREADAAIPFRRKFRKTNAAKLFLPPNFPDQRVEEAYLK 1094
Query: 287 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA-IEKIKAAKNKSSQG 340
PEV D++ W PD + L FL+S G++ +R + + I+ N+ +G
Sbjct: 1095 PEV--DKDDTGFVWGVPDLDALRRFLMSTVGWSQERTDEVLVPVIRDMNNREREG 1147
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE------ 114
SH+ G F R +LL G+KP++VFDG P LK+Q ++ R S+R +D
Sbjct: 53 --SHVVGFFRRICKLLFIGIKPVFVFDGGAPALKRQTISARKSRREGRREDAVRTASKLL 110
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDD 141
AV+ + + E+ KR +H DD
Sbjct: 111 AVQMQRRAEEEE-QKRKAAAQGRHADD 136
>gi|403411526|emb|CCL98226.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 11/242 (4%)
Query: 73 IRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 131
+RLL+ +KP VFDG P K+ + R +R + G ++ +
Sbjct: 4 VRLLQHYRIKPYIVFDGGPLPAKQGTESDRKKRRDENLARANALAAQGKHGQAREYYVKC 63
Query: 132 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 191
+ VT Q + L+ VP V AP EA+AQ A L + G V + +ED D L FG +
Sbjct: 64 IDVTPQMAYQLIKALRAESVPYVVAPYEADAQLAYLERIGIVDGIITEDSDLLVFGCKKV 123
Query: 192 LRHLMDPSSRKIPVMEFEVAKI-------LEELNLTMDQFIDLCILSGCDYCDSIRGIGG 244
L L S+ I V + A + + L + QF + ILSGCDY SI+GIG
Sbjct: 124 LFKLDPTSATIICVSRADFASVTSGSSGGISLLGWSDVQFRSMAILSGCDYLPSIQGIGL 183
Query: 245 QTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQLQIKWS 301
+TA L+R++ ++E ++ +N E + ++P ++ +++A ++F V +++ + S
Sbjct: 184 KTAHSLLRKYKTVENVIRALNLEGKKKVPSNYLQAFRKAEKVFLYQRVYDPTQEMLVYLS 243
Query: 302 AP 303
P
Sbjct: 244 DP 245
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 31/253 (12%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +I + ++T ++T +DC+ LLK+ G+PVV AP EAEAQCAAL ++G V V ++D
Sbjct: 672 QNEINRIQRQTSEITASMAEDCEELLKMFGIPVVRAPREAEAQCAALEQAGLVQGVVTDD 731
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSI 239
D FG ++L + E AK +E L L+ + I +L+G DY + I
Sbjct: 732 SDIFLFGGNVVYKNLFSQDHQ----CEMYAAKTIESNLKLSREDLIGFAMLTGSDYTNGI 787
Query: 240 RGIGGQTALKLIRQHGSIETILENIN--------------------RERY---QIPEDWP 276
+G A ++I + S +++L+ + R R+ + + +P
Sbjct: 788 ENVGPVMACEIIAEFRSGKSVLKTLTEFKKWWSLAQRGAALPKNSIRTRFIKLVLDDRFP 847
Query: 277 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKN 335
+ + P V +E+ WS P+ + L F + + D+ + I K ++
Sbjct: 848 SEAVHSAYCHPTVERVKEKF--SWSRPNLDLLRGFTAKKFNWPQDKTDGYLLPILKRYED 905
Query: 336 KSSQGRLESFFKP 348
KSSQ R++ F P
Sbjct: 906 KSSQSRIDRFLLP 918
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +LL K + E+ G+ +AID S+ + Q + +G AG
Sbjct: 1 MGVVGLWQLLDPTG----KPIRLETLEGKVLAIDISIWLNQLIKGYRTSGG------AGV 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
+HL G+F R +LL +KP++VFDG+ P LK Q LA R +R D + + +A +
Sbjct: 51 DNAHLVGLFQRVCKLLHYKIKPVFVFDGEAPALKYQTLASRKRRREDGNEAIRKATQ 107
>gi|164449252|gb|ABY56082.1| exonuclease [Cucumis sativus]
Length = 336
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 24/283 (8%)
Query: 1 MGIKGLTKLL-ADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL + P +K+ + G +AID Y +L ++ L N G
Sbjct: 1 MGIQGLLPLLKSIMLPIHIKDLE-----GSSVAIDT----YSWLHKGAFCCSKELCN--G 49
Query: 60 EVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
TS H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 50 LPTSKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTR---KENLARATEH 106
Query: 119 ---GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
GN + ++ V +T + ++LK V V AP EA+AQ L S QV A
Sbjct: 107 EMNGNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDA 166
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSG 232
V +ED D + FG PR + MD + + +++ + ++LN T +++CILSG
Sbjct: 167 VLTEDSDLIPFGCPRIIFK-MDKFGQGVE-FRYDMLQKNKDLNFSGFTKQMILEMCILSG 224
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
CDY S+ G+G + A LI++ S E ++ ++ +P +
Sbjct: 225 CDYLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHLY 267
>gi|384248409|gb|EIE21893.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 347
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 11/292 (3%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL + ++ Y G+K A+DA +++ E + ++
Sbjct: 1 MGIQGLLPLLKSITKSPVHVRR---YSGQKAAVDAYGWLHKAAYCCSYELCEGIYSD--- 54
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
+ R L +AG+ PI +FDG +K E R R++ + +AGN
Sbjct: 55 --RFVAYCMQRVETLQQAGVSPIIIFDGGRLPMKSAEEGTRARSRSENLEKARAYWQAGN 112
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ +R V ++ LK V + AP EA+AQ A L +G V V SED
Sbjct: 113 TTAAYESYQRAVDISPATAKQLIEALKAANVEYIVAPYEADAQMAYLAINGIVQVVISED 172
Query: 181 MDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 239
D L +G PR F + + ++I + + + + T D F+++CIL+GCD+ ++
Sbjct: 173 SDMLAYGCPRVFFKMDKNGDGQEICMADLPECRNPSLIGFTPDMFLEMCILAGCDFLKAL 232
Query: 240 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP--YQEARRLFKEPEV 289
IG + A IR++ + + +++ ++P ++ +Q A F+ V
Sbjct: 233 SSIGIKKAHGHIRKYKTFIRVCKSLRFSGVKVPREYEADFQRALWTFRHQRV 284
>gi|222619346|gb|EEE55478.1| hypothetical protein OsJ_03659 [Oryza sativa Japonica Group]
Length = 762
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L M E+ G+ +A+D +++ + G + L
Sbjct: 1 MGIQGLLPQLK----SIMAPIGLEALKGQTVAVDTYSWLHKGALSCGDRLCKGL-----P 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T H++ R L G+KPI VFDG +K + KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGN 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNL---TMDQFIDLCILSGCDY 235
D + FG R + MD + + EF + ++ EL+L TM +++CILSGCDY
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGV---EFHITRLQRCRELDLNGFTMQMLLEMCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
S+ G+G + A LI++ E +++++ +P +
Sbjct: 228 LPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 35/256 (13%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E ++K + + +VT+ D + LL+ G+P + AP EAEAQCA L K V + ++D
Sbjct: 754 QEQLQKAKRDSDEVTETMIRDVQELLRRFGIPYITAPMEAEAQCAELLKLNLVDGIITDD 813
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D FG + +++ ++K V + + I + L+ ++ IDL +L G DY + I+
Sbjct: 814 SDCFLFGGDKVYKNMF---NQKQYVECYIMNDINSRMGLSQEKLIDLALLLGSDYTEGIK 870
Query: 241 GIGGQTALKLIRQHGSIE--------------------------TILENINRERYQIPED 274
GIG A++++ + GS++ ++L I + +PE
Sbjct: 871 GIGPVMAMEILAEFGSLKKFKQWFDENTKTTVPPDKSGLTSIKRSLLNRIKNGTFFLPES 930
Query: 275 WPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKI 330
+P +K+PEV D ++ + KW P + + +FL+ ++ RV + I +
Sbjct: 931 FPDNVIFDAYKQPEV--DHDKSEFKWGVPSLDQIRSFLMYNVSWSQARVDEVMVPLIRDM 988
Query: 331 KAAKNKSSQGRLESFF 346
K + +Q + FF
Sbjct: 989 NRKKAEGTQSTISEFF 1004
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAG 59
MG+ L +L +A + + E+ +K+A+DAS+ IYQFL V + G M
Sbjct: 1 MGVNSLWDILGPSA----RPVRLEALSRKKLAVDASIWIYQFLKAVRDQEGNSM------ 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+H+ G F R +LL G+ PI+VFDG P LK+Q + +R +R
Sbjct: 51 -PQAHIVGFFRRICKLLYFGIYPIFVFDGGAPALKRQTINQRRERR 95
>gi|449525676|ref|XP_004169842.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 1-like [Cucumis
sativus]
Length = 685
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 24/283 (8%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL P +K+ + G +AID Y +L ++ L N G
Sbjct: 1 MGIQGLLPLLKSIMLPIHIKDLE-----GSSVAIDT----YSWLHKGAFCCSKELCN--G 49
Query: 60 EVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
TS H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 50 LPTSKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTRK---ENLARATEH 106
Query: 119 ---GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
GN + ++ V +T + ++LK V V AP EA+AQ L S QV A
Sbjct: 107 EMNGNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDA 166
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSG 232
V +ED D + FG PR + MD + + +++ + ++LN T +++CILSG
Sbjct: 167 VLTEDSDLIPFGCPRII-FKMDKFGQGVE-FRYDMLQKNKDLNFSGFTKQMILEMCILSG 224
Query: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
CDY S+ G+G + A LI + S E ++ ++ +P +
Sbjct: 225 CDYLPSLPGMGLKRAHALIXKFLSYEKVIRHLRYSTVAVPHLY 267
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 38/255 (14%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 868 EVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 927
Query: 193 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 252
+++ + S K+ V + + + +EL+L+ +Q + + +L G DY D + G+G TA++++
Sbjct: 928 KNMFN--SNKL-VECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILS 984
Query: 253 QHGSIETILE---------------------NINRERYQ--------IPEDWPYQEARRL 283
+ E L N R +++ +P +P R
Sbjct: 985 EFPESEGGLAAFCHWWADVQGQRRPKEDDAPNAFRRKFRKSQVAKLFLPVGFPNPAVREA 1044
Query: 284 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 339
+ +PEV E Q W P+ EGL +L++ G++ +R + + + N+ +Q
Sbjct: 1045 YMKPEVDDSPETFQ--WGVPNLEGLRQYLMATIGWSEERTDEVLVPVIRDMNRRDVEGTQ 1102
Query: 340 GRLESFFKPVANTSA 354
+ +F+ T A
Sbjct: 1103 SNITRYFEGGVGTGA 1117
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL +L A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWTVLQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 111
SH+ G F R +LL G++P++VFDG P LK+Q + R +R DD
Sbjct: 53 --SHVVGFFRRICKLLWFGIRPVFVFDGGAPALKRQTIQGRKRRREGRRDD 101
>gi|319411532|emb|CBQ73576.1| related to EXO1-exonuclease which interacts with Msh2p [Sporisorium
reilianum SRZ2]
Length = 758
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 131/279 (46%), Gaps = 15/279 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL D SY G+ + +DA + +++ R E++ G+
Sbjct: 1 MGIQGLLPLLKD----IQTPVHVSSYAGKTLGVDAYVWLHRGAYGCAR---EIVL---GD 50
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T IR+L+ G+KP VFDG K R +R+D E + G
Sbjct: 51 PTPRYIAHALSRIRMLQHFGVKPYLVFDGDKLPAKSGTEDDREQRRSDNLRRANELEQQG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
N + + V +T + ++LK +P V AP EA+AQ A L G V + +E
Sbjct: 111 NMQQARDVYAKCVDITPEMAFQLIKVLKEERIPYVVAPYEADAQLAYLEAEGIVDGIITE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FG L L D + + +++ F + + T +F + ILSGCDY
Sbjct: 171 DSDLLVFGCKTVLFKL-DQAGNAVEMLQQRFWTNRQIALSGWTAVEFRQMAILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
SI G+G + A +L+R++ +++ +L+ + E + ++P +
Sbjct: 230 SIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKMRVPPTY 268
>gi|426239609|ref|XP_004013712.1| PREDICTED: exonuclease 1 [Ovis aries]
Length = 835
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 138/285 (48%), Gaps = 24/285 (8%)
Query: 1 MGIKGLTKLLADNA-PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL + + + + P M++ Y G+ +A+D +++ + E L G
Sbjct: 1 MGIHGLLQFIKEASEPIHMRK-----YKGQVVAVDTYCWLHKGAVACA----EKLAK--G 49
Query: 60 EVTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVE 117
E T G + + LL G+KPI VFDG P K+ E ++R ++A+ E
Sbjct: 50 EPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLRE 109
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
E E F+ R++ VT + + + GV + AP EA+AQ A L K+G V AV
Sbjct: 110 GKVSEARECFT-RSINVTHTMAHNVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAVI 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDY 235
+ED D L FG + + MD + V + K L ++ T ++F +CILSGCDY
Sbjct: 169 TEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDY 226
Query: 236 CDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A KL+R + I ++ I + +PED+
Sbjct: 227 LSSLRGIGLAKACKLLRLANNPDILKVIRKIGHYLKMNITVPEDY 271
>gi|395325520|gb|EJF57941.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 606
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 109 TDDLAEAV-------EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS--E 159
+DDL E++ EA + E + +RT T+ + +++L+ MG+P VE+ S E
Sbjct: 366 SDDLPESITRYAEDLEAKSSVLSESYQRRTYAPTQSTYSESRQILRAMGIPCVESISAFE 425
Query: 160 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL 219
EA A+L +G VASEDMD L + AP LR++ +S + P+ ++ L L
Sbjct: 426 GEALAASLVVNGYADYVASEDMDVLVYDAP-LLRNI---ASSQDPLFVVHPDEVRAALGL 481
Query: 220 TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIP 272
+F+D +L G D+ I+ IG AL +RQHGSIE ILE ++ ++P
Sbjct: 482 DQTRFVDFALLLGTDFSQRIKNIGPARALAFMRQHGSIERILEQESKYPLRMP 534
>gi|328877038|gb|EGG25401.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
fasciculatum]
Length = 994
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 151/337 (44%), Gaps = 31/337 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL+ + + Y +++A+D +++ V E+ +
Sbjct: 1 MGITGLLPLLS----PIKRNIHIKDYANKRVAVDGYCWLHK---AVYSCSQELC--QGIP 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T +LQ + + P+ VFDG P K+ R SKR + + GN
Sbjct: 52 TTRYLQYCLNLISMMKSHKVIPVIVFDGGPLPNKRGTEDDRRSKRQQYKEKANAYLLEGN 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ + K ++ V VT + + L+ +G+ V AP EA+AQ A L + QV A+ +ED
Sbjct: 112 RAEANKCFQKAVDVTTLMAFNLIKELRRLGIEYVVAPYEADAQLAYLAVTNQVDAILTED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-------LEELNLTMDQFIDLCILSGC 233
D + +G P L + +++ E + I L+ N + +CIL+GC
Sbjct: 172 SDLIAYGTPTVLFKM----NKEGYCEEIKSENICSCKSNGLDFGNFNLTMLRQMCILAGC 227
Query: 234 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVT 291
DY S+ G+G +T+ KL +++ IE I + + + ++ E++ + +A F+ V
Sbjct: 228 DYLPSLHGMGIKTSYKLFKEYKEIEKIFKYLKGTK-RLTEEYVGSFYKADLTFRHARVYD 286
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 328
+ + +S DEE + G N D + + IE
Sbjct: 287 PVSKTMVHFSPLDEENV--------GTNMDFLGECIE 315
>gi|154294321|ref|XP_001547602.1| hypothetical protein BC1G_13933 [Botryotinia fuckeliana B05.10]
Length = 768
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 137/310 (44%), Gaps = 17/310 (5%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL P ++K KFE G+ + +DA +++ G M
Sbjct: 1 MGISGLLPLLKSIQKPCNLK--KFE---GKTLGVDAYGWLHR-----GTVSCAMDLAMGK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+++ R LL G+ P +FDG K R +R D+ E + AG
Sbjct: 51 PTRKYVEYCMHRVRMLLHFGVTPYLIFDGDYLPSKAATEKDREKRRKDSKRLGQELLNAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ V VT + LK MGV V AP EA+AQ L + G + + SE
Sbjct: 111 KTSQAYLEFQKAVDVTPEMARHVIDELKEMGVQYVVAPYEADAQMVYLERKGVIDGILSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA L L D I V +F K + + +F + ILSGCDY
Sbjct: 171 DSDLLVFGAKCLLTKL-DQYGNCIEVNKADFCACKDVNLTGWSDAEFRRMAILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
S+ +G +TA +LIR+H +IE +L I + ++ +P+++ + +A F V +
Sbjct: 230 SMSNMGLKTAYRLIRKHKTIEKVLRMIQFDGKFHVPKNYLESFYQAEFTFLHQRVFCPQS 289
Query: 295 QLQIKWSAPD 304
+ + PD
Sbjct: 290 LTLVLHTQPD 299
>gi|347827667|emb|CCD43364.1| similar to exonuclease [Botryotinia fuckeliana]
Length = 768
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 137/310 (44%), Gaps = 17/310 (5%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL P ++K KFE G+ + +DA +++ G M
Sbjct: 1 MGISGLLPLLKSIQKPCNLK--KFE---GKTLGVDAYGWLHR-----GTVSCAMDLAMGK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+++ R LL G+ P +FDG K R +R D+ E + AG
Sbjct: 51 PTRKYVEYCMHRVRMLLHFGVTPYLIFDGDYLPSKAATEKDREKRRKDSKRLGQELLNAG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ V VT + LK MGV V AP EA+AQ L + G + + SE
Sbjct: 111 KTSQAYLEFQKAVDVTPEMARHVIDELKEMGVQYVVAPYEADAQMVYLERKGVIDGILSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FGA L L D I V +F K + + +F + ILSGCDY
Sbjct: 171 DSDLLVFGAKCLLTKL-DQYGNCIEVNKADFCACKDVNLTGWSDAEFRRMAILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
S+ +G +TA +LIR+H +IE +L I + ++ +P+++ + +A F V +
Sbjct: 230 SMSNMGLKTAYRLIRKHKTIEKVLRMIQFDGKFHVPKNYLESFYQAEFTFLHQRVFCPQS 289
Query: 295 QLQIKWSAPD 304
+ + PD
Sbjct: 290 LTLVLHTQPD 299
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 868 EVTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 927
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKL- 250
+++ + + +E +AK LE EL+L+ +Q I L L G DY + + G+G TAL++
Sbjct: 928 KNMFNSNK----YVECYLAKDLETELSLSREQLIALAQLLGSDYTEGLPGVGPVTALEIL 983
Query: 251 ------------------IRQHGSI-ETILENINRERYQ--------IPEDWPYQEARRL 283
++ HG E ++ R +++ +P +P
Sbjct: 984 SEFPGRDGLAEFRDWWQDVQNHGRPKEADADSPFRRKFRKAHATKLFLPVGFPNPAVFDA 1043
Query: 284 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 339
+ PEV ++ E Q W PD +GL FL+ G++ +R + + + NK +Q
Sbjct: 1044 YLHPEVDSNTEPFQ--WGVPDLDGLRRFLMETIGWSQERTDEVLVPVIRDMNKRDVEGTQ 1101
Query: 340 GRLESFF 346
+ FF
Sbjct: 1102 SNITRFF 1108
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++GL ++ A + + +++AIDAS+ IYQFL V L N
Sbjct: 1 MGVQGLWTIVQPCA----RPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 53 --SHVVGFFRRICKLLWHGVKPVFVFDGGAPALKRATL 88
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 795 ECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 854
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 855 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 910
Query: 260 ILENINRER--YQIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 295
+ ++ + Y+IP+D P++ R+ FK EPEV +D
Sbjct: 911 FRDWWSQVQLGYKIPDD-PHEGFRKKFKKNVTKLFLPPGFPNKAVEKAYLEPEVDSDPSG 969
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
W PD + + FL++ G++ +R + I + + + +Q + FF+
Sbjct: 970 F--IWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDVNRREQEGTQSNITGFFQ 1023
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|297597717|ref|NP_001044421.2| Os01g0777300 [Oryza sativa Japonica Group]
gi|75114038|sp|Q60GC1.1|EXO1_ORYSJ RecName: Full=Exonuclease 1; AltName: Full=OsEXO-1
gi|54111120|dbj|BAD60834.1| exonuclease-1 [Oryza sativa Japonica Group]
gi|255673742|dbj|BAF06335.2| Os01g0777300 [Oryza sativa Japonica Group]
Length = 836
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L M E+ G+ +A+D +++ + G + L
Sbjct: 1 MGIQGLLPQLK----SIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGL-----P 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T H++ R L G+KPI VFDG +K + KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGN 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNL---TMDQFIDLCILSGCDY 235
D + FG R + MD + + EF + ++ EL+L TM +++CILSGCDY
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGV---EFHITRLQRCRELDLNGFTMQMLLEMCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
S+ G+G + A LI++ E +++++ +P +
Sbjct: 228 LPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
>gi|357131085|ref|XP_003567173.1| PREDICTED: exonuclease 1-like [Brachypodium distachyon]
Length = 893
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 14/289 (4%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L M E G+ +A+D Y +L + ++ L +
Sbjct: 1 MGIQGLLPQLK----SIMAPIGVEDLRGQTVAVDT----YSWLHKGALSCSDRLC-KGIP 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T H++ R L G+KPI VFDG +K ++ KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEIKRARSRKENLERAREHEAAGN 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRGAFESYQKAVDITPRIASELIQVLKQENVSYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKI--PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D + FG R + MD + + +M E + L+ T +++CILSGCDY S
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGVEFQIMRLEQNRELDFNGFTKQMLLEMCILSGCDYLPS 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP--YQEARRLFK 285
+ G+G + A LI++ S E +++++ +P + +++A R F+
Sbjct: 231 LPGMGVKRAHALIQKLKSHEKVIKHLRYSSVSVPPQYEENFKKAIRAFQ 279
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 793 ECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 852
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 853 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSGLEE 908
Query: 260 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 295
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 909 FRDWWSQVQLGNKIPDD-PHARFRKKFKKNITKLFLPPGFPDKAVEKAYLEPEVDSDPSE 967
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 347
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 968 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1021
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 793 ECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 852
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 853 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSGLEE 908
Query: 260 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 295
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 909 FRDWWSQVQLGNKIPDD-PHARFRKKFKKNITKLFLPPGFPDKAVEKAYLEPEVDSDPSE 967
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 347
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 968 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1021
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 31/255 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ L ++L + +K+ ++ G+ IA+D S+ + + V GT
Sbjct: 1 MGVNDLWQIL-----EPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIGTV------- 48
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
V HL+ +F R L++ +K ++V +G+PP LK ++KR R +
Sbjct: 49 -VKPHLRNLFFRISYLIQMNVKLVFVMEGEPPKLKADVISKRTQTRYGPS---------- 97
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K +K + K + +C +L+ +G+P V+A EAEA CA L SG V +
Sbjct: 98 GKPCSQKTGRSHFKSVLR---ECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTN 154
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
D D+ +GA R+ + K P ++ + + I +L L D + L +L GCDY
Sbjct: 155 DGDAFLYGAQMVYRNFT--MNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPK 212
Query: 238 SIRGIGGQTALKLIR 252
+ G+G + ALKL+R
Sbjct: 213 GVPGVGKEQALKLLR 227
>gi|218189150|gb|EEC71577.1| hypothetical protein OsI_03950 [Oryza sativa Indica Group]
Length = 762
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L M E+ G+ +A+D +++ + G + L
Sbjct: 1 MGIQGLLPQLK----SIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGL-----P 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T H++ R L G+KPI VFDG +K + KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGN 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+ ++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNL---TMDQFIDLCILSGCDY 235
D + FG R + MD + + EF + ++ EL+L TM +++CILSGCDY
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGV---EFHITRLQRCRELDLNGFTMQMLLEMCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
S+ G+G + A LI++ E +++++ +P +
Sbjct: 228 LPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 36/250 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 841 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 897
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL + I L G DY + I G+G TAL+++ + ++E
Sbjct: 898 -TVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFPTLED 956
Query: 260 ILENINRERY--QIPED---------------------WPYQEARRLFKEPEVVTDEEQL 296
+ ++ + ++PED +P + + EPEV +D
Sbjct: 957 FRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAF 1016
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK-PV-A 350
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ P+ A
Sbjct: 1017 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPLGA 1074
Query: 351 NTSAPIKRKE 360
AP +R +
Sbjct: 1075 GAFAPHRRPD 1084
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R +D A
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQRREGRREDAA 103
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LLKL G+P V AP EAEAQCA L G V + ++D D FG R +++ + +
Sbjct: 818 ECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMFNQAK 877
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 258
+E +A LE E +L + I L G DY + I GIG TAL+++ + +E
Sbjct: 878 ----FVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFPGLEE 933
Query: 259 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
TI ++ + R++++ +P +P + + EPEV D
Sbjct: 934 FRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAFPDKRVDIAYLEPEVDPDPSAF 993
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 346
Q W PD E L FL+S G++ +R + I + + + +Q + FF
Sbjct: 994 Q--WGVPDLEALRQFLMSTVGWSPERTDEVLVPVIRDVNRRELEGTQANITQFF 1045
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 22 KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81
K E+ +++A+DAS+ IYQFL V L N +H+ G F R +LL G+K
Sbjct: 18 KLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRN------AHVVGFFRRICKLLYFGIK 71
Query: 82 PIYVFDGQPPDLKKQELA 99
P++VFDG P LK+Q +A
Sbjct: 72 PVFVFDGGAPALKRQTIA 89
>gi|115384774|ref|XP_001208934.1| hypothetical protein ATEG_01569 [Aspergillus terreus NIH2624]
gi|114196626|gb|EAU38326.1| hypothetical protein ATEG_01569 [Aspergillus terreus NIH2624]
Length = 748
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 13/278 (4%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL KS+ K + + G+ + +DA +++ + +++
Sbjct: 1 MGIKGLHGLL-----KSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACA---VDLVLERP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H++ + R L G+ P VFDG K A+R+ +R + E G
Sbjct: 52 -TAKHIEFVLNRVRMLQYFGVTPYLVFDGDNLPSKSGTEAERHQRRQQSKALGLELQRKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT LK M V V AP EA+AQ L + G ++ + SE
Sbjct: 111 RITEAYQELQKAVDVTPSMARQLIEELKKMDVQYVVAPYEADAQLVYLERQGIIHGIISE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FGA R L L +I +F + + + T F +CILSGCDY +
Sbjct: 171 DSDLLVFGARRLLSKLDQHGDCIEINRADFAACRDVSLIGWTDADFRRMCILSGCDYLPN 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
I +G +TA + IR++ ++E L + E +Y +P D+
Sbjct: 231 IPRLGLKTAYRSIRKYKNVERALRMLQFEGQYNVPADY 268
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 36/250 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 841 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 897
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL + I L G DY + I G+G TAL+++ + ++E
Sbjct: 898 -TVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFPTLED 956
Query: 260 ILENINRERY--QIPED---------------------WPYQEARRLFKEPEVVTDEEQL 296
+ ++ + ++PED +P + + EPEV +D
Sbjct: 957 FRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAF 1016
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK-PV-A 350
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ P+ A
Sbjct: 1017 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPLGA 1074
Query: 351 NTSAPIKRKE 360
AP +R +
Sbjct: 1075 GAFAPHRRPD 1084
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R +D A
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQRREGRREDAA 103
>gi|428168266|gb|EKX37213.1| hypothetical protein GUITHDRAFT_40221, partial [Guillardia theta
CCMP2712]
Length = 305
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 31/310 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQ------FLIVVGRTGTEML 54
MGIKGL + +A + M+E + G+ + D +++ F I +G+
Sbjct: 1 MGIKGLRQAVAAH----MREGHVKEIAGKTVVCDGHAWLHKAAFGCAFDIAMGKP----- 51
Query: 55 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 114
T++ E HL M L G+ PI V DG+ K + ++R ++R E
Sbjct: 52 TDKYIEYCMHLVNM------LKFYGVTPIIVLDGRSLPGKARVNSERNARRESQRALGME 105
Query: 115 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 174
+ G++ K ++++ VT + L+ V + +P EA+AQ + + + G
Sbjct: 106 LLRRGDRSGALKCLQQSIHVTAEMAHAFHARLQSEKVTCIVSPYEADAQMSYMVRKGMAQ 165
Query: 175 AVASEDMDSLTFGAPRFLRHLMDPSSRKI----PVMEFEVAKILEELNLTMDQFIDLCIL 230
AV SED D + FG L + S I P+ E K ++ L+ D I +CIL
Sbjct: 166 AVISEDSDMVPFGVDMILYKMDTSGSCCIFENKPLGEGN-KKSMDVSKLSGDARIHMCIL 224
Query: 231 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDW--PYQEARRLFK 285
+GCDY SI GIG Q A LIR+HG + +E + + + ++P+ + ++ A +LFK
Sbjct: 225 AGCDYLQSIPGIGIQKAYGLIREHGDGKKAIEALRKHPKMKEKVPDGYEDAFERAEKLFK 284
Query: 286 EPEVVTDEEQ 295
V EE+
Sbjct: 285 HQWVYDMEER 294
>gi|330796677|ref|XP_003286392.1| hypothetical protein DICPUDRAFT_150348 [Dictyostelium purpureum]
gi|325083664|gb|EGC37111.1| hypothetical protein DICPUDRAFT_150348 [Dictyostelium purpureum]
Length = 916
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 131/272 (48%), Gaps = 14/272 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL L+ K + Y G+++AID Y +L + ++ L G
Sbjct: 1 MGISGLLPALS----PVTKAIHVKDYAGKRVAIDG----YSWLHKGAYSCSQELV--LGI 50
Query: 61 VTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T+ F I++L+ + P+ +FDG P KK + +R+ R + + G
Sbjct: 51 PTNGYINYFLNRIKMLQNYKVIPVVIFDGGPLPNKKGKEQERFQHREEYKSKGKAFLLEG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
NK ++ V +T + + + L+ + + AP EA+AQ L +GQV A+ +E
Sbjct: 111 NKSQANICFQKAVDITPRLAFNLIKELRKHKIEYLVAPYEADAQLTFLSITGQVDAIITE 170
Query: 180 DMDSLTFGAPRF-LRHLMDPSSRKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGCDYC 236
D D + +GA L+ D +++I + K + ++ T +CILSGCDY
Sbjct: 171 DSDLVAYGASNLILKMDKDGYAQEIKTEDLGSCKKDGYDFIDFTQTMLRQMCILSGCDYL 230
Query: 237 DSIRGIGGQTALKLIRQHGSIETILENINRER 268
S+ G+G +T+ KL++QH IE + + + RE+
Sbjct: 231 PSLPGMGLKTSFKLLKQHRDIEKVFKYLKREK 262
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
++T +T++ D LL+ GVP + AP EAEA A L K AV S+D D+L F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1474 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVN 1530
Query: 247 ALKLIRQHGSIETIL---------------------------ENIN-RERYQIPEDWPYQ 278
A++++R + S+E++ E+ N R ++ P D+P
Sbjct: 1531 AVEVLRAYPSLESLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSP 1590
Query: 279 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS----DRVTKAIEKIKAAK 334
E F+ P + D + W+ PD + ++ + G D + A+++ +A
Sbjct: 1591 EVFDAFESP--LVDRSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYTSAH 1648
Query: 335 NKSSQGRLESFF 346
Q R+ +F
Sbjct: 1649 AFQRQTRITAFL 1660
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL LL + A + + + G+ +A+DA++ + QFL + L + +
Sbjct: 1 MGVKGLWDLL-EPAGRRVAAGNLK---GKVVAVDAAIWLVQFLHAM------KLPDGSPM 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 51 PAAHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQR 95
>gi|388854492|emb|CCF51879.1| related to EXO1-exonuclease which interacts with Msh2p [Ustilago
hordei]
Length = 814
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 23/283 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL D + SY GR + ID + +++ R E++ +
Sbjct: 1 MGIQGLLPLLKDAS----LPIHISSYSGRTLGIDTYVWLHRGAYGCAR---EIVLGDPNP 53
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQ--PPDLKKQELAKRYSKRADATDDLAEA--V 116
++ +R L G+KP VFDG P K SKR +++LA A +
Sbjct: 54 --RYISYALSRIGMLQHFGIKPYLVFDGDKLP---AKTHTEDDESKR---SENLARAQQL 105
Query: 117 EA-GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
EA GN + + V +T + ++LK +P + AP EA+AQ A L K G + A
Sbjct: 106 EAEGNLQQARDLYAKCVDITPEMAYQLIKVLKEQAIPYLVAPYEADAQLAYLEKCGAIDA 165
Query: 176 VASEDMDSLTFGAPRFLRHLMDPSSRKIPV-MEFEVAKILEELNLTMDQFIDLCILSGCD 234
V ED D L FG L L D + + + E + + T +F + ILSGCD
Sbjct: 166 VLMEDSDLLVFGCNTVLFKL-DQAGNAVEIKQERFTNRQIALSGWTAVEFRQMAILSGCD 224
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWP 276
Y SI G+G + A +L+R+H +++ +L+ + E + IP +P
Sbjct: 225 YLPSIVGMGLKNAHRLLRRHKTVDKVLQVVRLEGKMSIPPTYP 267
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
++T +T++ D LL+ GVP + AP EAEA A L K AV S+D D+L F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1474 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVN 1530
Query: 247 ALKLIRQHGSIETIL---------------------------ENIN-RERYQIPEDWPYQ 278
A++++R + S+E++ E+ N R ++ P D+P
Sbjct: 1531 AVEVLRAYPSLESLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSP 1590
Query: 279 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS----DRVTKAIEKIKAAK 334
E F+ P + D + W+ PD + ++ + G D + A+++ +A
Sbjct: 1591 EVFDAFESP--LVDRSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYTSAH 1648
Query: 335 NKSSQGRLESFF 346
Q R+ +F
Sbjct: 1649 AFQRQTRITAFL 1660
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL LL + A + + + G+ +A+DA++ + QFL + L + +
Sbjct: 1 MGVKGLWDLL-EPAGRRVAAGNLK---GKVVAVDAAIWLVQFLHAM------KLPDGSPM 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 51 PAAHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQR 95
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
Length = 1128
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 36/250 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 803 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 859
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL + I L G DY + I G+G TAL+++ + ++E
Sbjct: 860 -TVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFPTLED 918
Query: 260 ILENINRERY--QIPED---------------------WPYQEARRLFKEPEVVTDEEQL 296
+ ++ + ++PED +P + + EPEV +D
Sbjct: 919 FRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAF 978
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK-PV-A 350
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ P+ A
Sbjct: 979 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPLGA 1036
Query: 351 NTSAPIKRKE 360
AP +R +
Sbjct: 1037 GAFAPHRRPD 1046
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 113
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R +D A
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQRREGRREDAA 103
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
++T +T++ D LL+ GVP + AP EAEA A L K AV S+D D+L F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1474 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVN 1530
Query: 247 ALKLIRQHGSIETIL---------------------------ENIN-RERYQIPEDWPYQ 278
A++++R + S+E++ E+ N R ++ P D+P
Sbjct: 1531 AVEVLRAYPSLESLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSP 1590
Query: 279 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS----DRVTKAIEKIKAAK 334
E F+ P + D + W+ PD + ++ + G D + A+++ +A
Sbjct: 1591 EVFDAFESP--LVDRSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYTSAH 1648
Query: 335 NKSSQGRLESFF 346
Q R+ +F
Sbjct: 1649 AFQRQTRITAFL 1660
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL LL + A + + + G+ +A+DA++ + QFL + L + +
Sbjct: 1 MGVKGLWDLL-EPAGRRVAAGNLK---GKVVAVDAAIWLVQFLHAM------KLPDGSPM 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 51 PAAHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQR 95
>gi|361129990|gb|EHL01866.1| putative DNA repair protein rad13 [Glarea lozoyensis 74030]
Length = 1157
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 35/223 (15%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT N +C+ LLK G+P + AP EAEAQCA L + G V ++D D FG R +
Sbjct: 776 VTSAMNQECQILLKKFGIPYIIAPGEAEAQCAELVRQGLVDGAITDDCDIFLFGGTRVYK 835
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
+L + S++ + + I +EL+L DQ I L L G DY + + G+G TA++L+ +
Sbjct: 836 NLFN-SNKDVEC--YLQKDIEQELSLGRDQMISLAQLLGSDYAEGLHGVGSVTAIELLSE 892
Query: 254 HGSIETILENIN---------------------RERYQ--------IPEDWPYQEARRLF 284
S T L++ R++++ +P +P +
Sbjct: 893 FSS-PTGLQDFKHWWTSVQGPHPPPLSEETSTFRKKFRRAQASKLFLPAGFPSPAVAEAY 951
Query: 285 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 327
+P V + +E+ +W PD EGL FL+ G++ +R + +
Sbjct: 952 YKPHVDSSKEEF--RWGVPDLEGLRGFLMQTIGWSQERTDEVL 992
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL-EAGMKPIYVF 86
GR++A+D S F ++ + A HL+ +F RT+ L + G P++V
Sbjct: 25 GRRVAVDLS-----FWVISHSAAIRARSPHAR--LPHLRTLFFRTLSLFSKMGAFPVFVV 77
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DGQP LK Q A R+ + + + EA D R K T+ + +DC LL
Sbjct: 78 DGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASAD-APVQPRNAKFTR-YVEDCVELL 135
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
+ +G+PV+ A E EA CA L G V A + D D+ FGA ++ L S+ K P
Sbjct: 136 EYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLR--SNCKEPFE 193
Query: 207 EFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIR 252
+ +A I L L Q + + +L G D+ + G G +TAL+ ++
Sbjct: 194 CYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
>gi|169767642|ref|XP_001818292.1| exonuclease [Aspergillus oryzae RIB40]
gi|83766147|dbj|BAE56290.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 746
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 143/311 (45%), Gaps = 15/311 (4%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGIKGL LL KS+ K + + G+ + +DA +++ + +++ +
Sbjct: 1 MGIKGLHGLL-----KSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACA---VDLVLDRP- 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T H+ + R LL G+ P +FDG K + R+ +R ++ E G
Sbjct: 52 -TTKHVDFVLNRVRMLLYFGVTPYLIFDGDNLPSKAGTESDRHQRRQESKTLGLELQRKG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + ++ V VT LK M V + AP EA+AQ L + G + + SE
Sbjct: 111 RTAEAYQEFQKAVDVTPLMARQLIDELKKMNVQYMVAPYEADAQLVYLERQGIINGIISE 170
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D L FGA R L L +I +F + + + T F +CILSGCDY +
Sbjct: 171 DSDLLVFGAKRLLSKLDQHGDCIEINRADFAACREVSLIGWTDADFRRMCILSGCDYLPN 230
Query: 239 IRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQ 295
I +G +TA + IR++ ++E L + E +Y +P ++ +++A F V +
Sbjct: 231 IARLGLKTAYRCIRKYRNVEKALRMLQFEGQYHVPTNYLENFKQAELTFLYQRVFCPQAG 290
Query: 296 LQIKWSAPDEE 306
+ +AP+++
Sbjct: 291 KLVTLTAPEDD 301
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 120/254 (47%), Gaps = 33/254 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFG-RKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ GL +L+ S++E + S G +A+D S+ I G + +T
Sbjct: 1 MGVHGLWGILS-----SVQEYRPLSKIGCDSVAVDLSIWI---------CGDKSITPLPA 46
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
HL+ +F R + LL PI V DG P LK + +R K +
Sbjct: 47 L---HLRNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQKWTGKI-----TTQKC 98
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K ++ + R KV+++ C +LL G+P V++P EAEA CA L + V A +
Sbjct: 99 TKPNLNRI--RFSKVSQE----CIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITN 152
Query: 180 DMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D+ +GA RH MD SR V F + +IL+ LNLT + L IL GCDY S
Sbjct: 153 DGDAFLYGAETVYRHFSMD--SRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWAS 210
Query: 239 -IRGIGGQTALKLI 251
+ +G AL+LI
Sbjct: 211 GVSRLGPVGALRLI 224
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL-EAGMKPIYVF 86
GR++A+D S F +V + A HL+ +F RT+ L + G P++V
Sbjct: 25 GRRVAVDLS-----FWVVSHSAAIRARSPHAR--LPHLRTLFFRTLSLFSKMGAFPVFVV 77
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DGQP LK Q A R+ + + + EA D R K T+ + +DC LL
Sbjct: 78 DGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASAD-ALVQPRNAKFTR-YVEDCVELL 135
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
+ +G+PV+ A E EA CA L G V A + D D+ FGA ++ L S+ K P
Sbjct: 136 EYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLR--SNCKEPFE 193
Query: 207 EFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIR 252
+ +A I L L Q + + +L G D+ + G G +TAL+ ++
Sbjct: 194 CYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
>gi|71018115|ref|XP_759288.1| hypothetical protein UM03141.1 [Ustilago maydis 521]
gi|46099138|gb|EAK84371.1| hypothetical protein UM03141.1 [Ustilago maydis 521]
Length = 828
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 15/279 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL LL D SY G+ + IDA + +++ R E++ G+
Sbjct: 1 MGIQGLLPLLKD----VQNSVHVSSYAGKTLGIDAYVWLHRGAYGCAR---EIVL---GD 50
Query: 61 VTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
T IR+L+ G+KP VFDG KK +R +R+D E +
Sbjct: 51 PTPRYIAHAVSRIRMLQHFGVKPYLVFDGDKLPAKKGTEDEREQRRSDNLRRAKELEQEK 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ + V +T + ++LK +P V AP EA+AQ A L G + V +E
Sbjct: 111 KLQQARDVYAKCVDITPEMAFQLIKVLKEDNIPYVVAPYEADAQLAYLEAEGIIDGVVTE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FG L L D + + +++ F + + T +F + ILSGCDY
Sbjct: 171 DSDLLVFGCKTVLFKL-DQAGNAVEMLQHRFWTNRQVALSGWTAVEFRQMAILSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
SI G+G + A +L+R++ +++ +L+ + E + +IP +
Sbjct: 230 SIVGMGLKNAHRLLRRYKTVDKVLQAVRLEGKMRIPPTY 268
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E ++K + + +VT+ D + LLK G+P + AP EAEAQCA L + G V + ++D
Sbjct: 744 QEKLQKAKRDSDEVTETMIRDVQELLKRFGIPYITAPMEAEAQCAELFRMGLVDGIVTDD 803
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D FG R +++ ++K V + I ++ L D+ I+L +L G DY + I+
Sbjct: 804 SDCFLFGGSRIYKNMF---NQKQYVECYIAEDIKNKIGLDQDKLIELAMLLGSDYTEGIK 860
Query: 241 GIGGQTALKLIRQHGSIET-------------------------ILENINRERYQIPEDW 275
GIG A++++ + G++ +L I + +P+ +
Sbjct: 861 GIGPVMAMEILAEFGTLSNFKLWFDRHAKSAERPQQEYTPLEKKLLTRIKNGKLFLPDGF 920
Query: 276 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 331
P R +K PEV D + KW P + + +FL+ ++ RV + I +
Sbjct: 921 PSSVVRDAYKRPEV--DRDDSAFKWGTPSLDQIRSFLMYNVQWSQARVDEVMVPLIRDMN 978
Query: 332 AAKNKSSQGRLESFF 346
K + +Q + FF
Sbjct: 979 RKKAEGTQSTIGEFF 993
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVV-GRTGTEMLTNEAG 59
MG+ L ++ A + K E+ +K+A+DAS+ IYQFL V + G N+ G
Sbjct: 1 MGVTSLWDIVGPAA----RPVKLEALSRKKLAVDASIWIYQFLKAVRDKDG-----NKLG 51
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRA 106
+ SH+ G F R +LL G+ P++VFDG P LK+Q + KR +R+
Sbjct: 52 Q--SHIVGFFRRICKLLYFGILPLFVFDGGAPPLKRQVILKRRERRS 96
>gi|440633917|gb|ELR03836.1| hypothetical protein GMDG_01365 [Geomyces destructans 20631-21]
Length = 775
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 144/321 (44%), Gaps = 39/321 (12%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNE-- 57
MGI GL LL KS+ K + + G+ I +DA Y +L GT T +
Sbjct: 1 MGISGLLPLL-----KSIHKPCNLKKFAGQTIGVDA----YGWL----HRGTISCTMDLV 47
Query: 58 AGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 116
G+ T +R+L+ G+ P +FDG K A R +RA + E +
Sbjct: 48 MGKPTRKFVDFAMHRVRMLQHFGVIPFLIFDGDYLPSKAATEADRNKRRAASKTLGLELL 107
Query: 117 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
AG ++ V VT + L + GV + AP EA+AQ L K G + +
Sbjct: 108 NAGKVAQANLELQKAVDVTPEMARQLIDELNMAGVQYIVAPYEADAQMVYLEKKGVIDGI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCD 234
SED D L FGA L L D I + +F + + + +F + ILSGCD
Sbjct: 168 LSEDSDLLVFGAKCLLTKL-DQYGNCIEINQADFSACRDINLAGWSEKEFRQMAILSGCD 226
Query: 235 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWP---YQE-----ARRLF- 284
Y SI +G +TA ++IR+H ++E ++ + + +Y +P+D+ YQ +R+F
Sbjct: 227 YLSSITNMGLKTAYRMIRKHKNVEKVIRMLQFDGKYHVPKDYLDNFYQAELTFLHQRVFC 286
Query: 285 ---------KEPEVVTDEEQL 296
EPE DEE+L
Sbjct: 287 PIANKVVFHTEPEQPIDEEKL 307
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 871 EVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGIVDGIVTDDSDTFLFGGTRVY 930
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + + +E ++K LE EL+L+ DQ I L L G DY + + G+G TA++++
Sbjct: 931 KNMFNSNK----FVECYISKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEIL 986
Query: 252 RQHGSIETILENIN---------------------RERYQ--------IPEDWPYQEARR 282
+ ++ LE+ R++++ +P +P
Sbjct: 987 SEFPG-KSGLEDFREWWTSVQSQSRPKEADAASPFRKKFRKTQATKLFLPPGFPNPAVYE 1045
Query: 283 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 336
+ PEV E Q W PD EGL FL++ G++ +R + + + NK
Sbjct: 1046 AYLHPEVDDTAEPFQ--WGVPDLEGLRRFLMATIGWSKERTDEVLVPVIRDMNK 1097
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWTVVQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 95
SH+ G F R +LL G++P++VFDG P LK+
Sbjct: 53 --SHVVGFFRRICKLLWFGIQPVFVFDGGAPALKR 85
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 23/231 (9%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
S G+ IA+D S+ + + V GT HL+ +F R L +K
Sbjct: 19 LHSLVGKTIAVDLSLWVCEAQSVKKMIGTVK--------KPHLRNLFFRISYLTLMDVKL 70
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDC 142
++V +G+PP+LK + KR R ++ + +++ + K ++ +C
Sbjct: 71 VFVMEGEPPELKADVINKRNQIRYGPSE------KTRSQKTGRSYFKSVLR-------EC 117
Query: 143 KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK 202
LL +G+P V+A EAEA CA L SG V ++D D+ +GA R+ +S+
Sbjct: 118 LELLDCIGIPWVQAAGEAEAMCAYLNASGYVDGCLTDDGDTFLYGAQTVYRNFA-MTSKD 176
Query: 203 IPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 252
V + ++ I+ EL L D + L IL GCDY + G+G + ALKLI
Sbjct: 177 PHVDCYTMSSIMSELGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIH 227
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 11/227 (4%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL-EAGMKPIYVF 86
GR++A+D S F IV T + A HL+ F RT+ L + G P++V
Sbjct: 25 GRRVAVDLS-----FWIVSHTTAIRARSPHARH--PHLRTTFFRTLSLFSKMGAFPVFVV 77
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DGQP LK Q A R+ + + ++ +A + + K ++ ++C LL
Sbjct: 78 DGQPSPLKYQARAARFFRGSGIDRSALQSEDAEGEASVPAPVKGRNAAFTRYVEECVELL 137
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
+G+PV+ A EAEA CA L G V A + D D+ FGA ++ L S+ K P
Sbjct: 138 GYLGMPVLRATGEAEALCAQLNNEGHVDACITSDSDAFLFGAKTVIKVLR--SNCKEPFE 195
Query: 207 EFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIR 252
+ +A I + L Q + + +L G D+ + G G +TAL+ ++
Sbjct: 196 CYNIADIESGIGLKRKQMVAMALLVGSDHDLHGVPGFGVETALRFVQ 242
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ L ++L + +K+ ++ G+ IA+D S+ + + V GT
Sbjct: 1 MGVNDLWQIL-----EPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIGTV------- 48
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
V HL+ +F R L++ +K ++V +G+PP LK ++KR R +
Sbjct: 49 -VKPHLRNLFFRISYLIQMNVKLVFVMEGEPPKLKADVISKRTQTRYGPS---------- 97
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K +K + K + +C +L+ +G+P V+A EAEA CA L SG V +
Sbjct: 98 GKPCSQKTGRSHFKSVLR---ECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTN 154
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DS 238
D D+ +GA R+ +++ V + + I +L L D + L +L GCDY
Sbjct: 155 DGDAFLYGAQMVYRNFTM-NTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKG 213
Query: 239 IRGIGGQTALKLIR 252
+ G+G + ALKL+R
Sbjct: 214 VPGVGKEQALKLLR 227
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
Length = 1128
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 830 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNQSK 889
Query: 201 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 260
V F + + +E L + I L G DY + I G+G TAL++I + ++E
Sbjct: 890 F---VECFLSSDLEKEYALDRIKLIQFAHLLGSDYTEGIPGVGPVTALEIITEFTNLEEF 946
Query: 261 LENINRER--YQIPEDWPYQEARRLFKE-----------PEVVTDEEQL---------QI 298
+ + + +IP D P+Q R+ FK+ P+ DE L +
Sbjct: 947 RDWWMQVQMGMEIPND-PHQRFRKKFKKMATKIFLPPSFPDRHIDEAYLHPAVDNDPSEF 1005
Query: 299 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 339
+W PD GL +FL++ G++ +R + + + NK Q
Sbjct: 1006 QWGVPDLNGLRSFLMATIGWSQERTDEVLVPVIRDMNKREQ 1046
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVQPCA----RPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHVVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIA 89
>gi|399217832|emb|CCF74719.1| unnamed protein product [Babesia microti strain RI]
Length = 434
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 33/282 (11%)
Query: 5 GLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSH 64
G+ KLL P S K + Y AIDA I++ L+ + ++ L E + ++
Sbjct: 2 GINKLLPFLKPLS-KRVHIKGYSSCVAAIDAMCWIHRALVA---SASKHLIGE--DSIAY 55
Query: 65 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI 124
L+ + + L+ G+ PI VFDG+ K+QE KR +R A ++ ++G +
Sbjct: 56 LKFILSMLNLLILHGITPIMVFDGKELPAKEQENNKRRERRQQAKEEALRMYKSGKYDKG 115
Query: 125 EKFSK--RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 182
E + K + + VT + D K + V V+ AP EA+ Q A LC++G SED D
Sbjct: 116 EFYRKCIQAITVTDEIIDRVIATCKHLNVQVIIAPFEADPQLAYLCRTGVANIAVSEDSD 175
Query: 183 SLTFGAPRFLRHL--------------------MDPSSRKIPVMEFEVAKILEELNLTMD 222
L +G PR L L + PS + P +A + + T +
Sbjct: 176 LLVYGCPRVLYKLGKDGYAEEVNIVTICHLPRQISPSYPRGPKPSGNIAMLKD---FTPE 232
Query: 223 QFIDLCILSGCDYCDS--IRGIGGQTALKLIRQHGSIETILE 262
F +CILSG DY ++ I G+G A K++ ++ SI+ I+E
Sbjct: 233 MFATMCILSGSDYDNNAHIHGMGIVMAYKIVSKYKSIDAIME 274
>gi|320167587|gb|EFW44486.1| exodeoxyribonuclease 1 [Capsaspora owczarzaki ATCC 30864]
Length = 522
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 5/158 (3%)
Query: 137 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 196
+H C L+ + V + AP EA+AQ L + + AV SED D L FG R L + M
Sbjct: 77 RHYQKCVDALRAINVEYIVAPYEADAQLGYLARENYIAAVISEDSDLLLFGCQRVL-YKM 135
Query: 197 DPSSRKIPVMEFEVAKILE-EL-NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 254
D + + + + A LE +L N T+DQ +CILSGCDY DSI GIG +TA KL+ ++
Sbjct: 136 DKFGEGVLIDQKDFANCLELDLQNWTLDQLRRMCILSGCDYLDSISGIGLKTANKLLIRY 195
Query: 255 GSIETILENINRERYQIPEDWP--YQEARRLFKEPEVV 290
+++ ++ ++ ++ +P D+ + +A FK VV
Sbjct: 196 KTVQNVVTHMRKKMMDVPRDYEDLFLQAENTFKYQRVV 233
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1240
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 39/248 (15%)
Query: 133 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 192
+VT+ +C+ LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R
Sbjct: 902 EVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVY 961
Query: 193 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 251
+++ + + +E + LE EL+L+ DQ I + L G DY + + G+G TA++++
Sbjct: 962 KNMFNSNK----FVECYLGSDLEKELSLSRDQLIAIAQLLGSDYTEGLPGVGPVTAVEIL 1017
Query: 252 RQHGSIETILE--------------------NINRERYQ--------IPEDWPYQEARRL 283
+ + + + N R +++ +P +P
Sbjct: 1018 SEFPGKDGLAKFRDWWQEVQMNSRPKEADATNPFRRKFRKSQATKLFLPTGFPNPAVTDA 1077
Query: 284 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 339
+ PEV + EQ Q W PD EGL FL++ G++ +R + + + NK +Q
Sbjct: 1078 YLRPEVDSSPEQFQ--WGVPDLEGLRQFLMATIGWSKERTDEVLVPVIRDMNKRDVEGTQ 1135
Query: 340 GRLESFFK 347
+ +F+
Sbjct: 1136 ANITRYFE 1143
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + + +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVNGLWTVVQPCA----RPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 98
SH+ G F R +LL G+KP++VFDG P LK+Q +
Sbjct: 53 --SHVVGFFRRICKLLWFGIKPVFVFDGGAPVLKRQTI 88
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 34/255 (13%)
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
+E + K + + +VT+ D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 715 QEKLHKAKRDSDEVTENMIGDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIITDD 774
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 240
D FG R +++ S+K V + I +++ L+ + I+L IL G DY + I+
Sbjct: 775 SDCFLFGGDRIYKNMF---SQKQFVECYLKNDIEDKIGLSRENLIELAILLGSDYTEGIK 831
Query: 241 GIGGQTALKLIRQHGSIE-------------------------TILENINRERYQIPEDW 275
GIG A++++ + GS++ + I + +P+++
Sbjct: 832 GIGPVLAVEILAEFGSLQGFKKWFDEKTKTTKLDQGVLTPLQKNLTNRIKNGKLFLPDNF 891
Query: 276 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 331
P + ++ PEV +D+ + KW P+ + + +FL+ ++ +RV + I +
Sbjct: 892 PDKVIFEAYQHPEVDSDKSEF--KWGIPNLDQIRSFLMFNVNWSQERVDEVMVPLIRDLN 949
Query: 332 AAKNKSSQGRLESFF 346
+ + +Q + FF
Sbjct: 950 KKRAEGTQSTIGEFF 964
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG++ L ++ +A + + E+ +K+A+DAS+ IYQFL V L
Sbjct: 1 MGVQSLWDIVGPSA----RPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQ---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
SH+ G F R +LL G++PI+VFDG P LK+Q + +R ++R ++ +A +
Sbjct: 53 --SHIVGFFRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKNRRQQNSESTRQAAQ 107
>gi|367031744|ref|XP_003665155.1| hypothetical protein MYCTH_2308577 [Myceliophthora thermophila ATCC
42464]
gi|347012426|gb|AEO59910.1| hypothetical protein MYCTH_2308577 [Myceliophthora thermophila ATCC
42464]
Length = 760
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 15/279 (5%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI GL LL KS+ + + + Y G + +D +++ + + G
Sbjct: 1 MGISGLLPLL-----KSIHRPTELKKYAGETLGVDGYGWLHRGAVACA------IELAQG 49
Query: 60 EVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 118
+ T +R+ + G+ P VFDG K + A R +R ++ E + A
Sbjct: 50 KPTRKYVDFAMHRVRMFKYFGVTPYVVFDGDFLPSKAKTEAARSKRREESKRIGLELLRA 109
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
G ++ + VT + LK VP V AP EA+AQ L + G + + S
Sbjct: 110 GKPSQAYSELQKAIDVTPEMARHLIEELKKADVPYVVAPYEADAQLVYLERQGLISGIVS 169
Query: 179 EDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
ED D L FGA R L L +I +F + + T +F + ILSGCDY D
Sbjct: 170 EDSDLLVFGAKRLLTKLDQHGQCVEINRRDFCAVREISLTGWTDREFRHMAILSGCDYLD 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
+ IG +TA +L+R+H + E I++ + + ++QIP+ +
Sbjct: 230 GVSNIGLKTAYRLVRKHKTPERIIKMLRFDGKHQIPDSY 268
>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 908
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 31/255 (12%)
Query: 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG+ L ++L + +K+ + G+ IA+D S+ + + V GT M
Sbjct: 1 MGVNDLWQIL-----EPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKKMIGTVM------ 49
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
HL+ +F R L + +K ++V +G+PP LK + KR R +
Sbjct: 50 --KPHLRNLFFRISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPS---------- 97
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
K +K + K + +C +L+ +G+P V+A EAEA CA L SG V +
Sbjct: 98 GKSRSQKTGRSHFKSVLR---ECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTN 154
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-D 237
D D+ +GA R+ + K P ++ + V+ I +L L D + L +L GCDY
Sbjct: 155 DGDAFLYGAQTVYRNFT--MNTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPK 212
Query: 238 SIRGIGGQTALKLIR 252
+ G+G + ALKL++
Sbjct: 213 GVPGVGKEQALKLLQ 227
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 830 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 886
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 887 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 945
Query: 260 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ +I R++++ +P +P + + EP+V +D
Sbjct: 946 FRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 1005
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
Q W PD L FL+S G++ +R + I + + + +Q + +FF+
Sbjct: 1006 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQ 1058
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|440292196|gb|ELP85438.1| exodeoxyribonuclease, putative [Entamoeba invadens IP1]
Length = 516
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 16/273 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL K +S+ +K ++AID +++ +T E G+
Sbjct: 1 MGIQGLRK----EVTESLVTRKLSDLKHTRVAIDGYALLHRGAYKDAKTLCE------GK 50
Query: 61 VTSHLQGMFTRTIRLLEAG-MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
+ L + + L++ + PI+VFDG KK +R R A + + ++G
Sbjct: 51 DSQFLSEYIMKVAQCLQSCQITPIFVFDGAELPSKKMTEDERKKSRDCALEKAKQLEDSG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
D EK+ + V++ + L+ +GV + AP EA+++ L K G V AV E
Sbjct: 111 LVNDSEKYYNKAVEIKPWMATAAIKSLREIGVESIVAPYEADSELGYLSKIGYVDAVLCE 170
Query: 180 DMDSLTFGAPR--FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D + G R F +L + + ++ + F ++ + L+ ++ + LC+ +GCDYC
Sbjct: 171 DSDLIVHGCKRVWFGFNLSEETVKEFTIENFAHTELGQ---LSREKLVYLCVFAGCDYCK 227
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRERYQ 270
S+RG+G + ALKL+ IE +L+ + E ++
Sbjct: 228 SLRGVGIKKALKLVTSAVDIEKVLDKMVNETFK 260
>gi|310796699|gb|EFQ32160.1| hypothetical protein GLRG_07304 [Glomerella graminicola M1.001]
Length = 869
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 146/323 (45%), Gaps = 79/323 (24%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFD 87
GR + I ++I+QF R GT N A ++ +F R +RLL G++PI+VFD
Sbjct: 64 GRPLRIAIDIAIWQFQTQAARGGT----NPA------IRTLFYRLLRLLSLGIQPIFVFD 113
Query: 88 GQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK 147
G + A + +KR+ D +A A+ KR+++
Sbjct: 114 G------PHKPAFKRNKRSGRGDGVATAM-------------------------AKRVIR 142
Query: 148 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR--KIP- 204
L G P+ +AP EAEA+CA L + G V AV SED+D++ FG R LR+ +R K P
Sbjct: 143 LFGFPLHDAPGEAEAECALLQQRGIVDAVLSEDVDTIMFGCTRTLRNWTAEGTRGAKTPT 202
Query: 205 -VMEFEVAKILEE-LNLTMDQFIDLCILSGCDY-------------CDSIRGIGGQTALK 249
V ++V ++L L + + + ++SG DY C++ + G++ +
Sbjct: 203 HVSLYDVDELLSAGTGLDREGMVLVALMSGGDYIPEGVPGCGVKLACEAAKAGFGKSLCR 262
Query: 250 L------------IRQHGSIETILENINRERYQ---IPEDWPYQEARRLFKEPEV--VTD 292
L + T R R++ IP+++P + R + P V T
Sbjct: 263 LKFDDDVELEEWRANLRDELRTNKSGFFRVRHKALSIPDEFPSRHVLRHYTHPVVSCATT 322
Query: 293 EEQL--QIKWSAP-DEEGLINFL 312
E+L +I WS P D +GL F+
Sbjct: 323 VEKLEKEIIWSRPVDVQGLRYFV 345
>gi|195441676|ref|XP_002068629.1| GK20322 [Drosophila willistoni]
gi|194164714|gb|EDW79615.1| GK20322 [Drosophila willistoni]
Length = 722
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 24/243 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+K L +L +A + + G+K+AID + + + L VV +
Sbjct: 1 MGVKELWSVLTPHAER----KPINELRGKKVAIDLAGWVCESLNVV---------DFFIH 47
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR--YSKRADATDDLAEAVEA 118
HL+ +F RT L+ + P++V +G P LK Q +AKR R D + +
Sbjct: 48 PRHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKDSGSSNKE 107
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
+ EK R V KQ C+ LL MG+ V+ P EAEA CA L K G V V S
Sbjct: 108 NTDKTKEKGRTRFNHVLKQ----CENLLISMGIQCVQGPGEAEAYCAFLNKHGLVDGVIS 163
Query: 179 EDMDSLTFGAPRFLRHL-----MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 233
+D D +GA R R+ ++ V +++ I ++ ++ I + +L GC
Sbjct: 164 QDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMRDICSRIDFGQNKIIVMALLCGC 223
Query: 234 DYC 236
DYC
Sbjct: 224 DYC 226
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 794 ECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 853
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 854 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 909
Query: 260 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 295
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 910 FRDWWSQVQLGNKIPDD-PHAGFRKKFKKNTTKLFLPPGFPDKAVEKAYLEPEVDSDPSE 968
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 347
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 969 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1022
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 830 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 886
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 887 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 945
Query: 260 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ +I R++++ +P +P + + EP+V +D
Sbjct: 946 FRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 1005
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
Q W PD L FL+S G++ +R + I + + + +Q + +FF+
Sbjct: 1006 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQ 1058
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|342182627|emb|CCC92106.1| putative exonuclease [Trypanosoma congolense IL3000]
Length = 783
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 31/288 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTE-------- 52
MGIKGL + +S + G+++A+D + +++ +I GTE
Sbjct: 1 MGIKGLWSEVKPVCQRS----HLSKFRGQRVAVDMYVWLHRGIIGSVELGTEADIEEFRS 56
Query: 53 ----MLTNEAGEV-------TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 101
+L + A V T LQ + +R LL+ G+ P+ VFDG +K+ + +R
Sbjct: 57 YAKSLLDSSAAAVEYTVPVNTRMLQCVMSRVDLLLKCGIHPVLVFDGAEIPMKRGKEEER 116
Query: 102 YSKRADATDDLAEAVEAGN-------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV 154
R + + GN +++I ++ + +T + +L+ + +
Sbjct: 117 KGNRDKHLIEALALLGNGNAPCTKSVQQEITALLEKGMDITTELAHAVILVLQERRLECI 176
Query: 155 EAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL 214
AP EA+AQ A LCK G V AV SED D + + P + L + ++ + ++ +
Sbjct: 177 VAPYEADAQLAYLCKQGYVQAVISEDSDLIAYQCPYLIAKLDHQGNCQV-ISAQDIPRCP 235
Query: 215 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE 262
+ L+ + F+ CI+SGCDY S+R IG + A L+RQ S+ +++
Sbjct: 236 KFQRLSYESFLVGCIMSGCDYLPSLRLIGIKKAFALVRQADSVRGLMQ 283
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 830 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 886
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 887 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 945
Query: 260 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ +I R++++ +P +P + + EP+V +D
Sbjct: 946 FRDWWSQVQMGANLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 1005
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
Q W PD L FL+S G++ +R + I + + + +Q + +FF+
Sbjct: 1006 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQ 1058
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|68059974|ref|XP_671969.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56488629|emb|CAI03948.1| hypothetical protein PB301454.00.0 [Plasmodium berghei]
Length = 151
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 152 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 211
P ++AE +CA C S + V S+D D+L FGAP +R + + R I +
Sbjct: 1 PYFYTKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNLIRFITNKKKRHIINKD---- 55
Query: 212 KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ- 270
+IL ELN+ +QFID CILSGCDY I GIG A ++I+++ +IET LE+ ++Y
Sbjct: 56 EILNELNINYEQFIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYSN 115
Query: 271 ------------------IPEDWPYQEARRLF 284
I ++ Y++AR++F
Sbjct: 116 TKRFNRKLSDVSMSLKDYILNEFTYEQARKIF 147
>gi|409978729|gb|AFV50340.1| nuclease-VHS inhibit celluar gene expression [Heliothis virescens
ascovirus 3g]
Length = 330
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 138/327 (42%), Gaps = 57/327 (17%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGIKGL+ +A + + ++ + G+ +A D Y+F G + + G
Sbjct: 1 MGIKGLSTFIAKHYSECVEVKPLSELQGKTVAFDLPCLAYRFWY--GFLSNKRYNDTGGG 58
Query: 61 VTSHLQ-------------GMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR--YSKR 105
H Q F +T+ G++ IYV +G P+ K+ + KR S R
Sbjct: 59 GEKHHQRNDVRMQHVGNGLAAFVKTMH--RNGIRAIYVAEGMAPERKRDTILKRNASSNR 116
Query: 106 ADATDDLAEAVEAGNKEDIEKF-SKRTV------------------------KVTKQHND 140
++ + V+ D E + +T+ +V H
Sbjct: 117 SNVRSNDVIVVQMETSCDYESIDAWQTIQRRGTACDESKQQDVPAVHTTVNNRVNFNHVH 176
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF-GAPRFLRHLMDPS 199
C L +G VV PSEAE CAAL + V AV S D D L + G R L + P
Sbjct: 177 AC---LHRLGESVVNGPSEAETTCAALMYTRMVDAVYSRDYDMLAYTGVDRVLYSISLPR 233
Query: 200 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
V +V K+L + L+ +QFID CIL G DY S+ G+ + AL+LI++ ++E
Sbjct: 234 CTYTCV---DVEKLLRLMKLSREQFIDFCILCGTDYNKSVPGMHPKKALQLIKECLNLEG 290
Query: 260 ILENINRERY--QIPEDWPYQEARRLF 284
++ E+Y + DW R LF
Sbjct: 291 VISTHKLEQYIDKKTYDW----IRNLF 313
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 115/252 (45%), Gaps = 32/252 (12%)
Query: 134 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 193
VT Q + + LL+L GVP V AP EAEAQCA L + G V V ++D D FGA R R
Sbjct: 945 VTAQMSAQIQILLRLFGVPFVNAPMEAEAQCAFLAQHGLVEGVITDDSDVFLFGAGRVYR 1004
Query: 194 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253
++ + S V F A + EL L + I L L G DY + + G+G A++++++
Sbjct: 1005 NMFNQSKT---VECFLAADLDRELGLDRETLISLAYLLGSDYTEGLPGVGPVVAMEIMKE 1061
Query: 254 HGSIETILENINRER-YQIPEDW------------------PYQEARR-LFKEPEVVTDE 293
+ E R Q+ +D P ++R + EP V E
Sbjct: 1062 FPGENGLREFCKWWRKVQVGKDVEADLGTTFRKHLGSICLKPLTPSKREAYLEPTVDESE 1121
Query: 294 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-------KAAKNKSSQGRLESFF 346
E+ Q W PD +GL FL E + +++V + I I ++ + QG L SF
Sbjct: 1122 ERFQ--WGLPDLDGLRRFLGDELSWPTEKVDETIIPIIRRMTQRSSSTTANRQGTLTSFI 1179
Query: 347 KPVANTSAPIKR 358
+ TS + R
Sbjct: 1180 EGHTFTSNNVTR 1191
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 23 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP 82
E+ G+ +AID+S+ +YQF + L N +H+ G RT +LL G+KP
Sbjct: 38 LETLEGKVLAIDSSIWLYQFQATMRDKEGRALVN------AHILGFLRRTSKLLFHGIKP 91
Query: 83 IYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 117
++VFDG P LK+ +A+R +++ A + A+ E
Sbjct: 92 VFVFDGGAPVLKRSTIAERKKRKSGAAANHAKVAE 126
>gi|63098616|gb|AAY32559.1| single strand DNA repair-like protein [Triticum monococcum]
Length = 646
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 11/227 (4%)
Query: 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL-EAGMKPIYVF 86
GR++A+D S F IV T + A H++ F RT+ L + G P++V
Sbjct: 25 GRRVAVDLS-----FWIVSHSTAIRARSPHARR--PHVRNTFFRTLSLFAKMGAFPVFVV 77
Query: 87 DGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLL 146
DG+P LK Q A R+ + + + + EA + K + + DC LL
Sbjct: 78 DGEPSPLKSQARAARFFRGSGVDPPASSSAEAEGEASAPAPVKARNAIFTRCVKDCVELL 137
Query: 147 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 206
K +G+PV+ A EAEA CA L G+V A + D D+ FGA ++ + S+ K P
Sbjct: 138 KNLGMPVLWAKGEAEALCAQLNNEGEVDACITSDSDAFLFGAKTVIKVMR--SNCKEPFE 195
Query: 207 EFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIR 252
+ + I + L Q + + +L G D+ + G G +TAL+ +R
Sbjct: 196 CYNIVDIESGIGLKRKQMVAMALLIGSDHDLHGVPGFGVETALRFVR 242
>gi|350589314|ref|XP_003130603.3| PREDICTED: exonuclease 1 [Sus scrofa]
Length = 836
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 140/284 (49%), Gaps = 22/284 (7%)
Query: 1 MGIKGLTKLLADNA-PKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL + + + + P +++ Y G+ +A+D +++ + E L G
Sbjct: 1 MGIQGLLQFIKEASEPVHVRK-----YKGQVVAVDTYCWLHKGAVACA----EKLAK--G 49
Query: 60 EVTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAVE 117
E T G + + LL G+KPI VFDG P K+ E ++R ++A+ E
Sbjct: 50 EPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLRE 109
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
E E F+ R++ +T + + GV + AP EA+AQ A L K+G V A+
Sbjct: 110 GKVSEARECFT-RSINITHAMAHSVIKAARAQGVDCLVAPYEADAQLAYLNKAGIVQAII 168
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDYC 236
+ED D L FG + + MD + V + + K + ++ T ++F +CILSGCDY
Sbjct: 169 TEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGKCKQLGDVFTEEKFRYMCILSGCDYL 227
Query: 237 DSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 275
S+RGIG A K++R + I +++ I + +PED+
Sbjct: 228 SSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
>gi|397639140|gb|EJK73406.1| hypothetical protein THAOC_04971, partial [Thalassiosira oceanica]
Length = 269
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 150 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 209
G+P VE+PSEAEAQCAAL + G V V +ED D FG + ++ D V +
Sbjct: 4 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKF---VEAYY 60
Query: 210 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ-----------HGSIE 258
I EL L D+ + L +L G DY D +RG+G ++++R HG +
Sbjct: 61 ARDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAFPPAADGVEGVHGGLS 120
Query: 259 TILENIN------------------------RERYQIPEDWPYQEARRLFKEPEVVTDEE 294
+ ++ R R+ P D+P + + P V D
Sbjct: 121 RFRDWMDGIGDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLRPAV--DTS 178
Query: 295 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 346
+ W+ PD + L F G+ + + + + K ++ S+Q RLES+F
Sbjct: 179 GTRFTWARPDLDALQRFCADALGWEREETARVVGPVLKVLESTSTQTRLESYF 231
>gi|358398186|gb|EHK47544.1| hypothetical protein TRIATDRAFT_263039 [Trichoderma atroviride IMI
206040]
Length = 812
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 146/335 (43%), Gaps = 83/335 (24%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGR----KIAIDASMSIYQFLIVVGRTGTEMLTN 56
MGIKG+ K L S+ + +S+ ++AID ++I+QF R GT N
Sbjct: 1 MGIKGIYKELGPGKRISLSKLASDSFENHNRPFRLAID--IAIWQFQNQAARGGT----N 54
Query: 57 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDG-QPPDLKKQELAKRYSKRADATDDLAEA 115
A ++ +F R +RLL ++PI+VFDG P K+ R S R D
Sbjct: 55 PA------IRTLFYRLVRLLGTPIQPIFVFDGPNKPKFKRN----RRSGRGDG------- 97
Query: 116 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 175
+ H KRL++L G +AP EAEA+CA L K+G V A
Sbjct: 98 ------------------FSAAH---AKRLIRLFGFIAHDAPGEAEAECAFLQKNGVVDA 136
Query: 176 VASEDMDSLTFGAPRFLRHLM--DPSSRKIPVMEFEVAKI-LEELNLTMDQFIDLCILSG 232
V SED+D++ FG R +++ +R + ++V ++ L L L + + + I+SG
Sbjct: 137 VLSEDVDTIMFGCTRTMKNWSAEGKGTRPTHISMYDVDELNLASLGLDREGMVLVAIMSG 196
Query: 233 CDYC-DSIRGIGGQTALK--------------------LIRQHGSIETILENINRERY-- 269
DY + + G G + A + L R S+ LE N +Y
Sbjct: 197 GDYIPEGVPGCGPKVACEAAKAGFGKSLCQLRASDTEGLRRWKASLIHELET-NESKYFR 255
Query: 270 ------QIPEDWPYQEARRLFKEPEVVTDEEQLQI 298
IPED+P E R + P VV+ E L I
Sbjct: 256 TRHKCLTIPEDFPNMEVLRYYTHP-VVSPESMLDI 289
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 781 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 837
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 838 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 896
Query: 260 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 296
+ +I R++++ +P +P + + EP+V +D
Sbjct: 897 FRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 956
Query: 297 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 347
Q W PD L FL+S G++ +R + I + + + +Q + +FF+
Sbjct: 957 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQ 1009
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ +++A+DAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 53 --AHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 1 MGIKGLTKLLADNAPKSMKEQK-FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MG++GL +LA ++E + G +A+D +SI+ G + N +
Sbjct: 1 MGVRGLWSILA-----PIQEHRPLAELGGETVAVD--LSIW----TCGDVSVKH--NMSV 47
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLAEAVEA 118
+L+ +F RT+ LL P+ V DG P LK +A R ++R + + AV
Sbjct: 48 STKLYLRNLFFRTLNLLRQNTLPVVVLDGVAPSLKATTIANRLCTQRRNIELSIDPAVLV 107
Query: 119 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 178
+ R K++ +C+ LL+ +GVP V++P EAEA CA L S +V A +
Sbjct: 108 KRR--------RLSKIS----GECRTLLQALGVPCVQSPGEAEAMCALLNSSKRVDACIT 155
Query: 179 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 238
D D+ +GA RH +SR V + ++I +EL+L + L I+ GCDY +
Sbjct: 156 NDGDAFLYGATTVYRHFTM-NSRDPSVYVYRSSRIYKELSLDRFLLVFLSIVLGCDYWPT 214
Query: 239 -IRGIGGQTALKLI 251
GIG +L+
Sbjct: 215 GTVGIGQAGIQRLV 228
>gi|302900804|ref|XP_003048331.1| hypothetical protein NECHADRAFT_84053 [Nectria haematococca mpVI
77-13-4]
gi|256729264|gb|EEU42618.1| hypothetical protein NECHADRAFT_84053 [Nectria haematococca mpVI
77-13-4]
Length = 803
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 52/258 (20%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFES--YFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEA 58
MGIKG+ + + + ++ + ++ + GR I ++I+QF V + GT N A
Sbjct: 1 MGIKGIYQEIGEGRRVALAKLAADTLVHEGRPFRIAIDIAIWQFQSQVAQGGT----NPA 56
Query: 59 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQ-PPDLKKQELAKRYSKRADATDDLAEAVE 117
++ +F R +RLL A +KP++VFDG P +K+ + S R DA
Sbjct: 57 ------IRTLFYRLVRLLAAPIKPVFVFDGPYKPKIKRN----KRSGRGDALS------- 99
Query: 118 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 177
N KRL+ L G P+ +AP EAEA+CA L + G V AV
Sbjct: 100 ---------------------NAQAKRLIHLFGFPIHDAPGEAEAECALLQQHGIVDAVM 138
Query: 178 SEDMDSLTFGAPRFLRHLMDPSSRK-----IPVMEFEVAKILEELNLTMDQFIDLCILSG 232
SED+D+L FG + LR S R+ + +++ E +++E+ L + + + ++SG
Sbjct: 139 SEDVDTLMFGCTKMLRQWSPQSKRQTCPTHVSLIDKEEMRLVEQ-GLDREGMVLVALMSG 197
Query: 233 CDYCD-SIRGIGGQTALK 249
DY I G G + A++
Sbjct: 198 GDYDPVGIAGCGPKVAVE 215
>gi|134108762|ref|XP_777034.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259717|gb|EAL22387.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1089
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 133/281 (47%), Gaps = 16/281 (5%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI GL LL + + + G+K+A+D + +++ G G + +
Sbjct: 1 MGISGLLPLLKEVS----VHGHISEFKGKKLAVDGYVWLHK-----GAFGCAEDLVKGKK 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-G 119
T ++ R L G++P VFDG P KK R R + + A ++EA G
Sbjct: 52 STKFVEYAMYRVRFLRHHGIEPFLVFDGGPLPAKKGTEVSRAKTRLENLEK-ARSLEAQG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
++ ++ R V VT + + L+ V V AP EA+AQ L + G V + +E
Sbjct: 111 RMKEAKEAYTRCVDVTPEMAYQLIKALRAENVDYVVAPYEADAQLCFLEREGYVDGIITE 170
Query: 180 DMDSLTFGAPRFLRHL--MDPSSRKIPVMEFEVAKILE--ELNLTMDQFIDLCILSGCDY 235
D D L FG + R + +D + + + +A + E T F + +LSGCDY
Sbjct: 171 DSDLLVFGCKKASRVIFKLDKDGQCVWIHRDRLAMVREFPMHGWTDVHFRRMAMLSGCDY 230
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 275
DSI GIG +TA +L+R+ S+E +L++I E Y +P +
Sbjct: 231 LDSIPGIGIKTAHRLMRRFNSVEKLLQHIRLEGTYLVPPTY 271
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 141 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 200
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 794 ECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 853
Query: 201 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 259
+E ++ LE E L + + L G DY + I GIG TAL+++ + +E
Sbjct: 854 ----YVECYLSSDLEKEYTLDRKKLVSFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 909
Query: 260 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 295
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 910 FKDWWSQVQLGNKIPDD-PHAGFRKKFKKNITKLFLPPGFPDKAVEKAYLEPEVDSDPSE 968
Query: 296 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 347
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 969 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1022
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+ GL ++ A + K E+ R++AIDAS+ IYQFL V L N
Sbjct: 1 MGVTGLWTVVKPCA----RLIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRN---- 52
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 99
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 --AHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 37/252 (14%)
Query: 127 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 186
++T VT++ D LL+ GVP V AP EAEA A AV S+D D+L F
Sbjct: 1420 LQQQTGNVTERMKDQVVALLRAFGVPFVTAPGEAEATAAYFTAQNLADAVISDDSDALVF 1479
Query: 187 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 246
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1480 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLDQQQLILLAMLLGCDYTLGVKGIGIVN 1536
Query: 247 ALKLIRQHGSIETI--------------LENIN--------------RERYQIPEDWPYQ 278
A++++R + S++ + +E + R ++ P D+P
Sbjct: 1537 AVEVLRAYPSLDALRAFRAWAEAPWTLGIEAADSAEVRKYKEAHKNYRLQWLFPHDFPSP 1596
Query: 279 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAK 334
E F+ P + D + W+ PD E +++ + G V A+++ AA
Sbjct: 1597 EVFDAFESP--LVDRSREPFSWAVPDVEAIVSIMTHAGGLRRSEVLDCLLPAVKRYTAAH 1654
Query: 335 NKSSQGRLESFF 346
Q R+ +F
Sbjct: 1655 AFQRQTRITAFL 1666
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MG+KGL LLA + + + G+ +A+DA++ + QFL + L + +
Sbjct: 1 MGVKGLWDLLA----PAGRRVAAGNLKGKIVAVDAAIWLVQFLHAM------KLPDGSPM 50
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 105
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 51 PAAHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLARKRQR 95
>gi|326525617|dbj|BAJ88855.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE 60
MGI+GL L M + E G+ +A+D +++ + G + +
Sbjct: 1 MGIQGLLPQLK----SIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGI-----P 51
Query: 61 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 120
T H++ R L G+KPI VFDG +K ++ KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGN 111
Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 180
++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRAAFDCYQKAVDITPKIALELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 181 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDY 235
D + FG R + MD + + EF++ ++ L ++ F +++CILSGCDY
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGV---EFQITRLERNRELDLNGFTKQMLLEMCILSGCDY 227
Query: 236 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 275
S+ G+G + A LI++ S E +++++ +P +
Sbjct: 228 LPSLPGMGVKRAHALIQKLKSHEKVIKHLRYSAVSVPPQY 267
>gi|297740589|emb|CBI30771.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 38/357 (10%)
Query: 1 MGIKGLTKLLAD-NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL P +K+ K G +A+D Y +L + ++ L ++
Sbjct: 1 MGIQGLLPLLKSIMVPFHIKDLK-----GCSVAVDT----YSWLHKGALSCSKQLC-KSI 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA- 118
+ H+ R L G++PI VFDG +K ++ KR R ++LA A+E
Sbjct: 51 PTSRHIDYCMHRVNLLRHYGVEPILVFDGGLLPMKIEQENKRARVR---KENLARAIEHE 107
Query: 119 --GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 176
GN + ++ V ++ + ++LK V + AP EA+AQ L S QV A+
Sbjct: 108 SNGNSAAAYECYQKAVDISPSIARELIQVLKQENVSYIVAPYEADAQMTFLAVSQQVDAI 167
Query: 177 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILS 231
+ED D + FG PR + MD + + EF+ + I + L+ F +++CILS
Sbjct: 168 ITEDSDMIPFGCPRIIFK-MDKFGQGV---EFKYSMIQQNKELSFAGFTKQMILEMCILS 223
Query: 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 291
GCDY S+ G+G + A LI++ S + +++++ +P Y+E+ FK+ ++T
Sbjct: 224 GCDYLQSLPGMGLKKAHALIKKFKSYDKVIKHLRYATGSVPP--LYEES---FKK-AMLT 277
Query: 292 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKS-SQGRLESFFK 347
+ Q + P E +++ V + N DR+ I I K + G L+ F K
Sbjct: 278 FQHQ---RVYDPTIEDIVHLSVLSD--NVDRILTIITLISQDIAKGIATGDLDPFTK 329
>gi|453080704|gb|EMF08754.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 739
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 17/301 (5%)
Query: 1 MGIKGLTKLLADNAPKSM-KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59
MGI+GL LL KS+ K + G+ + +DA +++ G + E
Sbjct: 1 MGIQGLLPLL-----KSIHKPTHLRHFAGQTLGVDAYGWMHR-----GTVACAIELAEGK 50
Query: 60 EVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAG 119
H+ + R L+ G+KP VFDG K +R ++R ++ + + G
Sbjct: 51 PTRKHIDFVMHRVRMLIHFGVKPYLVFDGDYLPSKAHTEKERAARRKESKRVGLDMLRMG 110
Query: 120 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 179
+ ++ V VT + L+ + V V AP EA++Q A L K G + V SE
Sbjct: 111 RPSQAQLELQKAVDVTPVMAREVIEELRKLDVEYVVAPYEADSQLAYLEKEGIINGVLSE 170
Query: 180 DMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCD 237
D D L FG L L D + V +F + + + + +F + +LSGCDY
Sbjct: 171 DSDLLVFGVNCLLTKL-DQFGECVMVNRADFTSVRDISLVGWSDKEFRMMAMLSGCDYLP 229
Query: 238 SIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEE 294
I IG +TA +L+R+H +IE I+ + + + ++P+D+ + A R F V E
Sbjct: 230 GIDKIGLKTAYRLVRKHKTIEKIVRTVQFDGKMKVPKDYLDAFYRAERTFMHQWVFCPEA 289
Query: 295 Q 295
Q
Sbjct: 290 Q 290
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,822,045,178
Number of Sequences: 23463169
Number of extensions: 238056417
Number of successful extensions: 803627
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2108
Number of HSP's successfully gapped in prelim test: 2121
Number of HSP's that attempted gapping in prelim test: 796389
Number of HSP's gapped (non-prelim): 5318
length of query: 384
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 240
effective length of database: 8,980,499,031
effective search space: 2155319767440
effective search space used: 2155319767440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)