Query 016711
Match_columns 384
No_of_seqs 315 out of 1870
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8k_A Flap endonuclease 1; he 100.0 3.6E-83 1.2E-87 624.4 35.0 341 2-347 1-341 (341)
2 1ul1_X Flap endonuclease-1; pr 100.0 1.3E-84 4.5E-89 644.4 23.2 378 2-384 1-379 (379)
3 3ory_A Flap endonuclease 1; hy 100.0 2.1E-81 7.2E-86 615.8 27.3 337 1-348 11-361 (363)
4 1b43_A Protein (FEN-1); nuclea 100.0 1.3E-75 4.4E-80 573.2 25.0 329 1-347 1-339 (340)
5 1a76_A Flap endonuclease-1 pro 100.0 5.6E-75 1.9E-79 565.6 21.4 323 1-347 1-326 (326)
6 1rxw_A Flap structure-specific 100.0 1.1E-73 3.8E-78 558.6 29.7 326 1-346 1-336 (336)
7 2izo_A FEN1, flap structure-sp 100.0 3.1E-74 1.1E-78 564.3 23.2 330 13-346 3-346 (346)
8 3qe9_Y Exonuclease 1; exonucle 100.0 1.8E-62 6.3E-67 480.0 20.1 279 1-293 1-291 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 3.7E-48 1.3E-52 367.4 11.5 214 4-267 2-236 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 3E-50 1E-54 431.4 -10.6 263 20-320 4-280 (832)
11 3h7i_A Ribonuclease H, RNAse H 100.0 3.8E-31 1.3E-35 249.0 10.3 183 27-245 12-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 98.8 6.8E-08 2.3E-12 105.9 15.2 240 1-245 1-299 (1140)
13 3pie_A 5'->3' exoribonuclease 98.7 9.3E-08 3.2E-12 103.8 12.1 237 1-245 1-302 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 98.4 1.3E-06 4.4E-11 92.4 11.8 234 1-244 4-349 (899)
15 2a1j_A DNA repair endonuclease 96.7 0.00067 2.3E-08 49.0 2.5 26 237-262 7-32 (63)
16 1z00_B DNA repair endonuclease 96.3 0.0022 7.4E-08 49.0 3.1 26 238-263 22-47 (84)
17 1kft_A UVRC, excinuclease ABC 95.1 0.009 3.1E-07 44.6 2.2 26 238-263 28-53 (78)
18 1x2i_A HEF helicase/nuclease; 95.0 0.019 6.4E-07 42.1 3.7 26 238-263 18-43 (75)
19 1z00_A DNA excision repair pro 95.0 0.018 6.1E-07 44.1 3.6 27 237-263 22-48 (89)
20 2a1j_B DNA excision repair pro 94.6 0.026 8.8E-07 43.4 3.6 25 238-262 36-60 (91)
21 2nrt_A Uvrabc system protein C 94.3 0.024 8.4E-07 50.9 3.3 26 237-262 171-196 (220)
22 3c65_A Uvrabc system protein C 91.5 0.034 1.2E-06 50.2 0.0 27 237-263 176-202 (226)
23 2bgw_A XPF endonuclease; hydro 88.9 0.19 6.6E-06 44.9 2.6 25 238-262 166-190 (219)
24 1ixr_A Holliday junction DNA h 88.4 0.21 7.1E-06 43.9 2.4 87 239-330 77-170 (191)
25 4gfj_A Topoisomerase V; helix- 87.4 0.36 1.2E-05 47.0 3.5 25 238-262 472-496 (685)
26 3v32_B Ribonuclease ZC3H12A; r 86.8 2 7E-05 37.3 7.8 102 28-181 24-134 (185)
27 1cuk_A RUVA protein; DNA repai 85.6 0.36 1.2E-05 42.8 2.3 18 239-256 78-95 (203)
28 3v33_A Ribonuclease ZC3H12A; r 82.5 3.5 0.00012 36.8 7.4 102 28-181 24-134 (223)
29 2ztd_A Holliday junction ATP-d 78.5 1 3.6E-05 40.1 2.6 107 214-330 73-188 (212)
30 1s5l_U Photosystem II 12 kDa e 77.6 0.54 1.8E-05 38.6 0.4 23 239-261 68-92 (134)
31 1vq8_Y 50S ribosomal protein L 74.7 0.61 2.1E-05 42.4 0.0 25 237-261 18-43 (241)
32 3maj_A DNA processing chain A; 72.0 5.2 0.00018 38.7 5.8 41 219-265 17-57 (382)
33 2w9m_A Polymerase X; SAXS, DNA 68.9 5.8 0.0002 40.6 5.7 27 238-264 101-128 (578)
34 2owo_A DNA ligase; protein-DNA 68.8 2.7 9.2E-05 43.8 3.2 26 237-262 515-540 (671)
35 2ziu_A MUS81 protein; helix-ha 68.7 3.5 0.00012 38.6 3.8 29 238-266 241-269 (311)
36 3sgi_A DNA ligase; HET: DNA AM 68.2 1.1 3.6E-05 46.3 0.0 26 238-263 533-558 (615)
37 2duy_A Competence protein come 67.2 2.5 8.7E-05 30.6 1.9 17 238-254 31-47 (75)
38 3c1y_A DNA integrity scanning 64.7 3.1 0.00011 40.1 2.5 25 239-263 320-344 (377)
39 3arc_U Photosystem II 12 kDa e 64.0 1.8 6.3E-05 33.5 0.6 23 238-260 30-54 (97)
40 2bcq_A DNA polymerase lambda; 63.6 4.3 0.00015 38.6 3.3 26 238-263 100-126 (335)
41 2i5h_A Hypothetical protein AF 63.5 5.3 0.00018 35.1 3.5 47 219-265 112-168 (205)
42 3b0x_A DNA polymerase beta fam 61.9 5 0.00017 41.0 3.6 27 239-265 98-126 (575)
43 2fmp_A DNA polymerase beta; nu 60.0 4.4 0.00015 38.6 2.6 25 238-262 102-127 (335)
44 1dgs_A DNA ligase; AMP complex 59.8 4.2 0.00014 42.3 2.6 25 237-261 510-534 (667)
45 1jms_A Terminal deoxynucleotid 59.7 5.2 0.00018 38.8 3.1 25 238-262 125-150 (381)
46 2ztd_A Holliday junction ATP-d 59.7 7.2 0.00024 34.6 3.8 35 219-255 108-144 (212)
47 2ihm_A POL MU, DNA polymerase 57.4 5.7 0.00019 38.1 2.9 24 238-261 106-130 (360)
48 4glx_A DNA ligase; inhibitor, 55.5 7.8 0.00027 39.7 3.7 14 141-154 241-254 (586)
49 3vdp_A Recombination protein R 50.1 6.7 0.00023 34.7 1.9 15 238-252 30-44 (212)
50 2g3q_A Protein YBL047C; endocy 46.3 15 0.0005 23.4 2.7 26 302-329 2-27 (43)
51 1vdd_A Recombination protein R 44.6 9.1 0.00031 34.2 1.9 15 238-252 16-30 (228)
52 2edu_A Kinesin-like protein KI 43.1 12 0.00042 28.5 2.3 17 238-254 44-60 (98)
53 1ixr_A Holliday junction DNA h 40.5 14 0.00049 32.0 2.5 18 238-255 111-128 (191)
54 2zvk_U DNA polymerase ETA, pro 40.0 3.8 0.00013 23.2 -0.8 15 335-350 6-20 (26)
55 4glx_A DNA ligase; inhibitor, 37.2 24 0.00083 36.0 4.0 26 237-262 515-540 (586)
56 3b0x_A DNA polymerase beta fam 35.4 23 0.00079 36.0 3.5 39 212-253 108-147 (575)
57 3fhg_A Mjogg, N-glycosylase/DN 34.5 17 0.00058 31.8 2.0 15 238-252 121-135 (207)
58 2zix_A Crossover junction endo 34.2 4.5 0.00016 37.8 -1.9 29 238-266 237-265 (307)
59 1cuk_A RUVA protein; DNA repai 34.1 19 0.00065 31.5 2.3 17 238-254 112-128 (203)
60 2dak_A Ubiquitin carboxyl-term 33.7 49 0.0017 22.9 4.0 26 302-329 7-32 (63)
61 2ekk_A UBA domain from E3 ubiq 33.1 39 0.0013 21.9 3.2 26 302-329 7-32 (47)
62 1rvv_A Riboflavin synthase; tr 31.1 43 0.0015 28.0 3.8 44 134-177 26-76 (154)
63 1pu6_A 3-methyladenine DNA gly 31.1 21 0.00071 31.5 2.0 15 238-252 125-139 (218)
64 3fhf_A Mjogg, N-glycosylase/DN 30.4 22 0.00075 31.4 2.1 16 238-253 129-144 (214)
65 1hqk_A 6,7-dimethyl-8-ribityll 29.6 44 0.0015 27.9 3.7 44 134-177 26-76 (154)
66 3tvs_A Cryptochrome-1; circadi 29.5 55 0.0019 33.0 5.1 36 137-172 61-99 (538)
67 3n0u_A Probable N-glycosylase/ 29.3 22 0.00076 31.5 1.9 18 238-255 134-151 (219)
68 3r8n_M 30S ribosomal protein S 28.6 43 0.0015 26.5 3.3 17 239-255 21-37 (114)
69 1kea_A Possible G-T mismatches 28.3 25 0.00084 31.0 2.0 16 238-253 119-134 (221)
70 2csb_A Topoisomerase V, TOP61; 28.2 39 0.0013 30.9 3.3 104 209-319 352-492 (519)
71 1c2y_A Protein (lumazine synth 28.1 53 0.0018 27.4 3.9 44 134-177 27-76 (156)
72 1kg2_A A/G-specific adenine gl 27.8 25 0.00087 31.0 2.0 14 239-252 114-127 (225)
73 2h56_A DNA-3-methyladenine gly 27.8 25 0.00086 31.3 2.0 15 238-252 142-156 (233)
74 3iz6_M 40S ribosomal protein S 27.5 9.8 0.00034 31.8 -0.7 17 239-255 33-49 (152)
75 2dag_A Ubiquitin carboxyl-term 27.5 62 0.0021 23.3 3.7 26 302-329 7-32 (74)
76 1kz1_A 6,7-dimethyl-8-ribityll 27.3 49 0.0017 27.7 3.6 44 134-177 31-82 (159)
77 1wji_A Tudor domain containing 27.1 73 0.0025 22.2 4.0 26 302-329 7-32 (63)
78 2qip_A Protein of unknown func 26.2 56 0.0019 27.1 3.9 46 142-187 66-125 (165)
79 3mk7_B Cytochrome C oxidase, C 25.9 46 0.0016 29.1 3.2 31 142-172 156-197 (203)
80 3nq4_A 6,7-dimethyl-8-ribityll 25.7 38 0.0013 28.3 2.6 44 134-177 26-77 (156)
81 2crn_A Ubash3A protein; compac 25.6 35 0.0012 24.0 2.0 27 301-329 6-32 (64)
82 1di0_A Lumazine synthase; tran 25.5 31 0.0011 28.9 2.0 44 134-177 24-74 (158)
83 1orn_A Endonuclease III; DNA r 25.0 31 0.001 30.6 2.0 15 238-252 117-131 (226)
84 2abk_A Endonuclease III; DNA-r 24.7 30 0.001 30.2 1.9 14 239-252 114-127 (211)
85 1ify_A HHR23A, UV excision rep 24.6 43 0.0015 22.0 2.2 25 302-328 6-30 (49)
86 1wiv_A UBP14, ubiquitin-specif 24.5 82 0.0028 22.6 3.9 27 301-329 26-52 (73)
87 1veg_A NEDD8 ultimate buster-1 24.3 79 0.0027 23.5 3.8 27 301-329 26-52 (83)
88 3p87_G Ribonuclease H2 subunit 24.3 17 0.00059 20.1 0.1 13 337-349 3-15 (23)
89 3s6i_A DNA-3-methyladenine gly 24.0 33 0.0011 30.4 2.0 15 238-252 143-157 (228)
90 2ziu_B Crossover junction endo 23.7 62 0.0021 30.5 4.0 28 239-266 260-287 (341)
91 3umv_A Deoxyribodipyrimidine p 23.6 88 0.003 31.2 5.3 31 139-170 97-127 (506)
92 1z96_A DNA-damage, UBA-domain 23.4 1.1E+02 0.0037 18.5 3.9 26 303-329 2-27 (40)
93 2obx_A DMRL synthase 1, 6,7-di 23.3 33 0.0011 28.7 1.8 44 134-177 25-75 (157)
94 2yg9_A DNA-3-methyladenine gly 23.1 35 0.0012 30.2 2.0 15 238-252 150-164 (225)
95 2wq7_A RE11660P; lyase-DNA com 23.1 1.2E+02 0.0041 30.4 6.3 32 297-331 350-381 (543)
96 3i0w_A 8-oxoguanine-DNA-glycos 22.7 35 0.0012 31.4 2.0 15 238-252 215-229 (290)
97 4b21_A Probable DNA-3-methylad 22.3 37 0.0013 30.2 2.0 15 238-252 154-168 (232)
98 1v96_A Hypothetical protein PH 21.9 1.2E+02 0.0042 23.9 5.1 66 133-217 71-140 (149)
99 1vg5_A RSGI RUH-014, rhomboid 21.8 1.1E+02 0.0038 22.0 4.2 27 301-329 26-52 (73)
100 1ejb_A Lumazine synthase; anal 21.7 88 0.003 26.4 4.1 44 134-177 30-85 (168)
101 1mpg_A ALKA, 3-methyladenine D 21.2 40 0.0014 30.8 2.0 15 238-252 211-225 (282)
102 1w8i_A Putative VAPC ribonucle 21.1 1.3E+02 0.0045 24.1 5.2 50 133-187 77-130 (156)
103 2jhn_A ALKA, 3-methyladenine D 21.0 40 0.0014 31.1 2.0 15 238-252 214-228 (295)
104 3zvk_A VAPC2, toxin of toxin-a 20.7 1.9E+02 0.0066 22.1 6.0 55 132-191 71-129 (134)
105 1whc_A RSGI RUH-027, UBA/UBX 3 20.6 67 0.0023 22.4 2.7 26 302-329 7-32 (64)
106 3u5c_S 40S ribosomal protein S 20.3 64 0.0022 26.6 2.9 17 239-255 35-51 (146)
No 1
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=3.6e-83 Score=624.43 Aligned_cols=341 Identities=55% Similarity=0.987 Sum_probs=324.3
Q ss_pred CccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCc
Q 016711 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81 (384)
Q Consensus 2 GI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~ 81 (384)
||+|||++|++.+|.++++.++++|+|++|+||||+|+||+||+++ .++.+|+++.|.+|+|++||++++++|++++++
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~-~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~ 79 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVR-QGGDVLQNEEGETTSHLMGMFYRTIRMMENGIK 79 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCE-ETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCE
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccc-cccCCCCCCCCCCchHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999999999999999999999999987 345689999999999999999999999988999
Q ss_pred eEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHHH
Q 016711 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAE 161 (384)
Q Consensus 82 Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EAD 161 (384)
|+|||||.+|++|++++++||++|.++.+.+.++.+.|+.+++.+|+++++.||+.|++.++++|++|||||++||||||
T Consensus 80 P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EAD 159 (341)
T 3q8k_A 80 PVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAE 159 (341)
T ss_dssp EEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHH
T ss_pred ceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCCC
Q 016711 162 AQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241 (384)
Q Consensus 162 a~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~i~g 241 (384)
||||+|++.|.+++|+|+|+|++||++++|++++...+.++.++..|+.+.+++.+|++|+||+|+|+|+||||+|||||
T Consensus 160 d~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipG 239 (341)
T 3q8k_A 160 ASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239 (341)
T ss_dssp HHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTT
T ss_pred HHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999999999999999999988875443444567899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCCHH
Q 016711 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321 (384)
Q Consensus 242 iG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~~~ 321 (384)
||||||++||++|||+|+|++++++.+.++|++|++.+++++|++|+|+++.+ .+|.|+.||.++|++||+++++|+++
T Consensus 240 iG~KtA~kll~~~gsle~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~~-~~l~~~~pd~~~l~~fl~~~~~f~~~ 318 (341)
T 3q8k_A 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPES-VELKWSEPNEEELIKFMCGEKQFSEE 318 (341)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTTT-SCCCCCCCCHHHHHHHHTTTTCCCHH
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCcc-cccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999998766 48999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccccccC
Q 016711 322 RVTKAIEKIKAAKNKSSQGRLESFFK 347 (384)
Q Consensus 322 ~v~~~~~~l~~~~~~~~q~~l~~ff~ 347 (384)
||+++++||+++++ |++||+||.
T Consensus 319 rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 319 RIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp HHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred HHHHHHHHHHHHhc---cCcHhhhcC
Confidence 99999999998875 999999993
No 2
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.3e-84 Score=644.45 Aligned_cols=378 Identities=54% Similarity=0.964 Sum_probs=294.7
Q ss_pred CccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCc
Q 016711 2 GIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMK 81 (384)
Q Consensus 2 GI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~ 81 (384)
||+|||+||++++|.++++++++.++|++|+|||++|+||+||+++. ++..++++.|.+|+|++||++++++|+++||+
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~~~-~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~ 79 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQ-GGDVLQNEEGETTSHLMGMFYRTIRMMENGIK 79 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC--------------CCHHHHHHHHHHHHHHHTTCC
T ss_pred CcChhHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhCCC-cccccCcCCCCCchHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999999999999999999999999999999863 44578999999999999999999999999999
Q ss_pred eEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHHH
Q 016711 82 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAE 161 (384)
Q Consensus 82 Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EAD 161 (384)
|+|||||.+|++|++++++||++|.++++.++++++.|+.+++.+|+++++.+|..|++.++++|++|||||++||||||
T Consensus 80 P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgEAD 159 (379)
T 1ul1_X 80 PVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAE 159 (379)
T ss_dssp EEEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHH
T ss_pred eEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCCC
Q 016711 162 AQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 241 (384)
Q Consensus 162 a~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~i~g 241 (384)
||||+|++.|.+++|+|+|+|++|||+++|++++...+.++.++..|+.+.+++.+|++++||+|+|+|+||||+|||||
T Consensus 160 d~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~IpG 239 (379)
T 1ul1_X 160 ASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG 239 (379)
T ss_dssp HHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCCTT
T ss_pred HHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCCCCC
Confidence 99999999999999999999999999999988875433344568899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCCHH
Q 016711 242 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 321 (384)
Q Consensus 242 iG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~~~ 321 (384)
||||||++||++|+|+|+|++++++.+..+|++|++.+++.+|++|+|+++.++ ++.|..||.++|++||+++++|+++
T Consensus 240 IG~KtA~kLl~~~gsle~i~~~~~~~k~~~~~~~~~~~ar~l~l~~~v~~~~~~-~l~~~~pd~~~l~~fl~~~~~f~~~ 318 (379)
T 1ul1_X 240 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESV-ELKWSEPNEEELIKFMCGEKQFSEE 318 (379)
T ss_dssp CCHHHHHHHHHHSSSHHHHHTTCCCTTSCCCSSCCHHHHHHHHHSCCCCCGGGC-CCCCCCCCHHHHHHHTTTTSCCCHH
T ss_pred cCHHHHHHHHHHcCCHHHHHHHHHhhcccCCCcCCHHHHHHHhcCCeeCCCCCc-cCCCCCCCHHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999888899999999999999999999988778 8999999999999998899999999
Q ss_pred HHHHHHHHHHHhhccCCCCccccccCcCcCCCCccccCCCCCCCcccccccccCCC-CCCCCCC
Q 016711 322 RVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKEPENTPKATTNKKSKAGG-GGGRKRK 384 (384)
Q Consensus 322 ~v~~~~~~l~~~~~~~~q~~l~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 384 (384)
||++.+++|.++.+..+|+|||+||+++++... .+|++++. +...++++++|+ +++|++|
T Consensus 319 rv~~~~~rl~~~~~~~~q~~l~~ff~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 379 (379)
T 1ul1_X 319 RIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSS-AKRKEPEP--KGSTKKKAKTGAAGKFKRGK 379 (379)
T ss_dssp HHHHHHHHHHHHHSCCSBCCHHHHSEEEEEEEC-CCCCC-------------------------
T ss_pred HHHHHHHHHHHhhccCCCCcHHhhcCCCCCCcc-cccccccc--ccccccccccCCcccccCCC
Confidence 999999999998888899999999987653322 35543332 233334444444 5666654
No 3
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=2.1e-81 Score=615.84 Aligned_cols=337 Identities=36% Similarity=0.641 Sum_probs=300.3
Q ss_pred CCccchHHHHhhhcCCCcccc-cccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQ-KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAG 79 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~-~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~g 79 (384)
||| |||++|++.+ .+++ ++++|+|++|+||||+||||++++++...+++|+++.|.+|+|++||++++++++++|
T Consensus 11 MGv-~L~~ll~~~~---~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~ 86 (363)
T 3ory_A 11 MGV-DLKDIIPGEA---KTVIEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAG 86 (363)
T ss_dssp CSC-CCGGGCCGGG---EEECSSGGGGTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTT
T ss_pred cCc-CHHHHhhHhc---ccccCCHHHhCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 999 9999999754 4677 9999999999999999999999988755567899999999999999999999999999
Q ss_pred CceEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchH
Q 016711 80 MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 159 (384)
Q Consensus 80 i~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~E 159 (384)
++|+|||||.+|++|++++++||++|.++++++..+.+.|+.+++.+++++++.+|++|++.++++|++|||||++||||
T Consensus 87 i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgE 166 (363)
T 3ory_A 87 IKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAE 166 (363)
T ss_dssp CEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSC
T ss_pred CCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCc---------ceEEEeHHHHHHHhCCCHHHHHHHHHH
Q 016711 160 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------PVMEFEVAKILEELNLTMDQFIDLCIL 230 (384)
Q Consensus 160 ADa~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~---------~~~~~~~~~v~~~~gl~~~q~id~~~L 230 (384)
||||||+|++.|.+++|+|+|+|+||||+++|+++++..+..+. ..+.|+.+.+++.+|++|+||+|+|+|
T Consensus 167 ADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L 246 (363)
T 3ory_A 167 GEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGIL 246 (363)
T ss_dssp HHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999988764321110 236899999999999999999999999
Q ss_pred hCCCCCC-CCCCCcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHH
Q 016711 231 SGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 309 (384)
Q Consensus 231 ~G~Dy~~-~i~giG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~ 309 (384)
+||||++ ||||||||||++||++|||+|+|+++++. ..+| |++.+++++|++|+|++ +. +|+|+.||.++|+
T Consensus 247 ~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--~~~~--~~~~~~~~~f~~p~v~~--~~-~~~w~~pd~~~l~ 319 (363)
T 3ory_A 247 LGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--SPIE--VDVIAIKKYFLQPQVTD--NY-RIEWHTPDPDAVK 319 (363)
T ss_dssp HCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--CSSC--CCHHHHHHHHHSCCCCS--CC-CCCCCCCCHHHHH
T ss_pred hCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--ccCC--CCHHHHHHHhcCCCCCC--CC-CCCCCCCCHHHHH
Confidence 9999999 99999999999999999999999999874 2343 67899999999999995 45 6999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhc---cCCCCccccccCc
Q 016711 310 NFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKP 348 (384)
Q Consensus 310 ~f~~~~~~f~~~~v~~~~~~l~~~~~---~~~q~~l~~ff~~ 348 (384)
+|||++++|+++||++.++||.++.+ +++|+|||+||+.
T Consensus 320 ~fl~~~~~f~~~rv~~~~~~l~~~~~~~~~~~q~~l~~~f~~ 361 (363)
T 3ory_A 320 RILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFSK 361 (363)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcccccCcCCCHHHhcCC
Confidence 99999999999999999999988765 4899999999973
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=1.3e-75 Score=573.17 Aligned_cols=329 Identities=42% Similarity=0.731 Sum_probs=303.6
Q ss_pred CCccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGM 80 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi 80 (384)
||| |||+|| +.++.++++|+|++|+|||++||||++++++..++.+++++.|.+|+|++||++++++|+++++
T Consensus 1 MGI-gL~~~l------~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i 73 (340)
T 1b43_A 1 MGV-PIGEII------PRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGI 73 (340)
T ss_dssp -CC-CCGGGC------CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTC
T ss_pred CCC-ChHHHh------cccccCHHHhCCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCC
Confidence 999 999999 2678899999999999999999999999996445567999999999999999999999999999
Q ss_pred ceEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHH
Q 016711 81 KPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEA 160 (384)
Q Consensus 81 ~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EA 160 (384)
.|+|||||.+|++|++++++|+.+|.++.+.+.+++..|+.+.+.++++++..+|+.|++.++++|++|||||++||+||
T Consensus 74 ~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EA 153 (340)
T 1b43_A 74 KPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEG 153 (340)
T ss_dssp EEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCH
T ss_pred EEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhH
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCc---------ceEEEeHHHHHHHhCCCHHHHHHHHHHh
Q 016711 161 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------PVMEFEVAKILEELNLTMDQFIDLCILS 231 (384)
Q Consensus 161 Da~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~---------~~~~~~~~~v~~~~gl~~~q~id~~~L~ 231 (384)
|||||+|++.|.+++|+|+|+|+++||+++|++++...+..+. ..+.|+.+.+++.+|++++||+|+|+|+
T Consensus 154 Da~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~ 233 (340)
T 1b43_A 154 EAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILV 233 (340)
T ss_dssp HHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999987764322111 2457999999999999999999999999
Q ss_pred CCCCCC-CCCCCcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHH
Q 016711 232 GCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310 (384)
Q Consensus 232 G~Dy~~-~i~giG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~ 310 (384)
||||++ ||||||||||++||++|||+|+|+++ |++|++.+++++|++|.|.+ ..++.|..||.++|.+
T Consensus 234 G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~--------~~~~~~~~~~~~~~~~~v~d---~~~~~~~~pd~~~l~~ 302 (340)
T 1b43_A 234 GTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK--------QSDVDLYAIKEFFLNPPVTD---NYNLVWRDPDEEGILK 302 (340)
T ss_dssp CCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG--------GCSSCHHHHHHHHHSCCCCC---CCCCCCCCCCHHHHHH
T ss_pred CCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC--------CCCccHHHHHHHHhCCCCCC---cccCCCCCCCHHHHHH
Confidence 999999 99999999999999999999999988 46677788999999998885 3478999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCCCCccccccC
Q 016711 311 FLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 347 (384)
Q Consensus 311 f~~~~~~f~~~~v~~~~~~l~~~~~~~~q~~l~~ff~ 347 (384)
||+++++|+++||++.++||.+..++.+|+|||+||+
T Consensus 303 ~~~~~~~f~~~rv~~~~~~~~~~~~~~~q~~l~~~f~ 339 (340)
T 1b43_A 303 FLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339 (340)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHHHHHTTGGGCCSSCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhhcCCCCCCHHHhhC
Confidence 9989999999999999999998888889999999996
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=5.6e-75 Score=565.60 Aligned_cols=323 Identities=39% Similarity=0.680 Sum_probs=289.4
Q ss_pred CCccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGM 80 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi 80 (384)
||| |||+|| +.++.++++++|++|+|||++|+||++++++...+.+++++.|.+|++++||++++++++.+++
T Consensus 1 MGI-gL~~~l------~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i 73 (326)
T 1a76_A 1 MGV-QFGDFI------PKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDI 73 (326)
T ss_dssp -CC-CCGGGS------CCEECCSGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTC
T ss_pred CCC-ChHHHH------hhcccCHHHhCCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCC
Confidence 999 999999 3678899999999999999999999999996444567999999999999999999999988899
Q ss_pred ceEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHH
Q 016711 81 KPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEA 160 (384)
Q Consensus 81 ~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EA 160 (384)
+|+|||||.+|++|++++++||++|.++++++..+++.|+.+++.+++++++.+|+.|++.++++|+++||||++|||||
T Consensus 74 ~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEA 153 (326)
T 1a76_A 74 TPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEG 153 (326)
T ss_dssp EEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCH
T ss_pred eEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccH
Confidence 99999999999999999999999999999998777888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CC
Q 016711 161 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SI 239 (384)
Q Consensus 161 Da~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~-~i 239 (384)
|||||+|++.|.+++|+|+|+|++|||+++|++++...+ ..++.|+.+.+++.+|++|+||+|+|+|+||||++ ||
T Consensus 154 D~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~---~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~Gv 230 (326)
T 1a76_A 154 EAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK---EMPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGV 230 (326)
T ss_dssp HHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS---SCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTT
T ss_pred HHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC---CceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999999988776432 24789999999999999999999999999999999 99
Q ss_pred CCCcHHHHHHHHHHhCCHHHHH-HHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCC
Q 016711 240 RGIGGQTALKLIRQHGSIETIL-ENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGF 318 (384)
Q Consensus 240 ~giG~ktA~~li~~~~sle~il-~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f 318 (384)
||||||||++||++ ||+|+|+ ++++. +.+++.+|++|.|.. ++ ++.|..||.++|++||+++++|
T Consensus 231 pGiG~ktA~kli~~-gsle~i~~~~~~~----------~~~~~~~~l~~~l~~--~~-~~~~~~~d~~~l~~~~~~~~~f 296 (326)
T 1a76_A 231 KGIGFKRAYELVRS-GVAKDVLKKEVEY----------YDEIKRIFKEPKVTD--NY-SLSLKLPDKEGIIKFLVDENDF 296 (326)
T ss_dssp TTCCHHHHHHHHHH-TCHHHHHHHHSTT----------HHHHHHHHHSCCCCC--CC-CCCCCCCCHHHHHHHHTTTTCC
T ss_pred CCcCHHHHHHHHHc-CCHHHHHHHHHhH----------HHHHHHHHhCCCCCC--Cc-cCCCCCCCHHHHHHHHHHhcCC
Confidence 99999999999999 9999999 99752 357889999999886 55 8999999999999997799999
Q ss_pred CHHHHHHHHHHHHHhhcc-CCCCccccccC
Q 016711 319 NSDRVTKAIEKIKAAKNK-SSQGRLESFFK 347 (384)
Q Consensus 319 ~~~~v~~~~~~l~~~~~~-~~q~~l~~ff~ 347 (384)
+++||++.++||.+..++ .+|+|||+||+
T Consensus 297 ~~~rv~~~~~~~~~~~~~~~~q~~l~~~f~ 326 (326)
T 1a76_A 297 NYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326 (326)
T ss_dssp CHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHhcCCCcCchhhhcC
Confidence 999999999999987765 78999999995
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=1.1e-73 Score=558.64 Aligned_cols=326 Identities=37% Similarity=0.651 Sum_probs=284.7
Q ss_pred CCccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGM 80 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi 80 (384)
||| |||+|| +.++.+++.|+|++|+|||++|+||++++++..++.+++++.|.+|++++||++++++|++++|
T Consensus 1 MGI-~L~~~l------~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i 73 (336)
T 1rxw_A 1 MGA-DIGDLF------EREEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGI 73 (336)
T ss_dssp --C-TGGGGC------CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTC
T ss_pred CCC-ChHHHH------hcceeCHHHhCCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCC
Confidence 999 999999 2578899999999999999999999999986545567999999999999999999999999899
Q ss_pred ceEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHH
Q 016711 81 KPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEA 160 (384)
Q Consensus 81 ~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EA 160 (384)
+|+|||||.+|++|++++++||++|.++++.+..+.+.|+ +++..+++++..+|+.|++.++++|++|||||++|||||
T Consensus 74 ~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeA 152 (336)
T 1rxw_A 74 RPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEG 152 (336)
T ss_dssp EEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCH
T ss_pred EEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchH
Confidence 9999999999999999999999999999999999999999 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCC---------cceEEEeHHHHHHHhCCCHHHHHHHHHHh
Q 016711 161 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK---------IPVMEFEVAKILEELNLTMDQFIDLCILS 231 (384)
Q Consensus 161 Da~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~---------~~~~~~~~~~v~~~~gl~~~q~id~~~L~ 231 (384)
|||||+|++.|.+++|+|+|+|++||++++|++++...+.++ ...+.|+.+.+++.+|++|+||+|+|+|+
T Consensus 153 EA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~ 232 (336)
T 1rxw_A 153 EAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILV 232 (336)
T ss_dssp HHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhc
Confidence 999999999999999999999999999999998876543211 13568999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCc-hHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHH
Q 016711 232 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 310 (384)
Q Consensus 232 G~Dy~~~i~giG~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~-~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~ 310 (384)
||||++||||||||||++||++|||+|+|+++++ ++|+ ..+.+.+|.+|+|+. ..++.|..||.++|.+
T Consensus 233 GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~-------~~l~~~~~l~~i~~~~~v~~---~~~~~~~~~d~~~l~~ 302 (336)
T 1rxw_A 233 GTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK-------VNIDHVEEIRNFFLNPPVTD---DYRIEFREPDFEKAIE 302 (336)
T ss_dssp CBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT-------C----CHHHHHHHHSCCCCC---CCCCCCCCCCHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC-------CCCccHHHHHHHHhCCCCCC---cccccCCCCCHHHHHH
Confidence 9999999999999999999999999999999986 3343 358889999999883 3479999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCCCCcccccc
Q 016711 311 FLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 346 (384)
Q Consensus 311 f~~~~~~f~~~~v~~~~~~l~~~~~~~~q~~l~~ff 346 (384)
||+++++|+++||++.++||.++++ +|+|||+||
T Consensus 303 ~~~~~~~f~~~rv~~~~~~l~~~~~--~q~~l~~~f 336 (336)
T 1rxw_A 303 FLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336 (336)
T ss_dssp HHTTTTCCCHHHHHHHHGGGCC--------------
T ss_pred HHHHccCCCHHHHHHHHHHHHhhhc--cCcchhhcC
Confidence 9989999999999999999987654 799999998
No 7
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.1e-74 Score=564.26 Aligned_cols=330 Identities=37% Similarity=0.632 Sum_probs=242.1
Q ss_pred hcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCceEEEEeCCCCc
Q 016711 13 NAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPD 92 (384)
Q Consensus 13 ~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~Pv~VFDG~~~~ 92 (384)
.+|+++++.+++.|+|++|+|||++|+||++++++...+.+++++.|.+|++++||++++++++++|++|+|||||.+|+
T Consensus 3 ~~~~~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~ 82 (346)
T 2izo_A 3 LVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPE 82 (346)
T ss_dssp CCCCCCEECCHHHHTTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC----
T ss_pred cCCCCcccCCHHHhCCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 45778999999999999999999999999999986434557999999999999999999999999899999999999999
Q ss_pred hhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHcCC
Q 016711 93 LKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 172 (384)
Q Consensus 93 ~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~EADa~~A~L~~~g~ 172 (384)
+|++++++||++|.++++++..+.+.|+.+++.+|+++++.+|+.|++.++++|++|||||++||||||||||+|++.|.
T Consensus 83 ~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~ 162 (346)
T 2izo_A 83 QKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGL 162 (346)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcccccCCCeeEEEeecCCCCCc---------ceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCC-CCCCC
Q 016711 173 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGI 242 (384)
Q Consensus 173 ~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~---------~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~-~i~gi 242 (384)
+++|+|+|+|++|||+++|++++...+.++. .++.|+.+.+++.+|++|+||+|+|+|+||||++ |||||
T Consensus 163 ~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GI 242 (346)
T 2izo_A 163 SWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGI 242 (346)
T ss_dssp SSEEECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTC
T ss_pred eEEEECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCc
Confidence 9999999999999999999988754432211 3467999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHHhCCHHHHHHHHhhccCCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCCHHH
Q 016711 243 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 322 (384)
Q Consensus 243 G~ktA~~li~~~~sle~il~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~~~~ 322 (384)
|+|||++||++|||+|+|+++++..+ +|++|++.+++.+|.++.|+.+ ..++.|..||.++|.+||+++++|+++|
T Consensus 243 G~KtA~kLi~~~gsle~i~~~~~~~k--~~~~~~~~~l~~i~~~~~v~~~--~~~l~~~~~d~~~l~~~~~~~~~f~~~r 318 (346)
T 2izo_A 243 GPERALKIIKKYGKIEKAMEYGEISK--KDINFNIDEIRGLFLNPQVVKP--EEALDLNEPNGEDIINILVYEHNFSEER 318 (346)
T ss_dssp CHHHHHHHHHHSSCC-------------------CTTHHHHHHSCCCCCC--C-CCCCCCCCHHHHHHHTTTTTCCCHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHhcc--CCCCccHHHHHHHhhCCCCCCc--cccCccCCCCHHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999998774 8999988899999999999855 3479999999999999998999999999
Q ss_pred HHHHHHHHHHhhcc----CCCCcccccc
Q 016711 323 VTKAIEKIKAAKNK----SSQGRLESFF 346 (384)
Q Consensus 323 v~~~~~~l~~~~~~----~~q~~l~~ff 346 (384)
|.+.++||.++.++ ++|+|||+||
T Consensus 319 v~~~~~~l~~~~~~~~~~~~q~~l~~ff 346 (346)
T 2izo_A 319 VKNGIERLTKAIKEAKGASRQTGLDRWF 346 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTBCCGGGCC
T ss_pred HHHHHHHHHHHhhcccCCCCCcchhhcC
Confidence 99999999887653 6899999999
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=1.8e-62 Score=480.00 Aligned_cols=279 Identities=28% Similarity=0.436 Sum_probs=250.6
Q ss_pred CCccchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHH-HcC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLL-EAG 79 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll-~~g 79 (384)
|||+|||+||++.+ ++.+++.|+|++||||||+||||+++++.. . ...|++|+|+.++|+++++++ ++|
T Consensus 1 MGI~GL~~~L~~~~----~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~----~--l~~G~~t~~l~~~~~r~l~~L~~~g 70 (352)
T 3qe9_Y 1 MGIQGLLQFIKEAS----EPIHVRKYKGQVVAVDTYCWLHKGAIACAE----K--LAKGEPTDRYVGFCMKFVNMLLSHG 70 (352)
T ss_dssp -CCTTHHHHTTTSE----EEEEGGGGTTSEEEEETHHHHHHHHHHTHH----H--HHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCcchHHHHHHhhC----CcCCHHHhCCcEEEEecHHHHHHhhhccch----h--hcCCCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999999874 578999999999999999999999888742 2 257999999999999999875 799
Q ss_pred CceEEEEeCCCCchhhHHHHHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchH
Q 016711 80 MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 159 (384)
Q Consensus 80 i~Pv~VFDG~~~~~K~~~~~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~E 159 (384)
|+|+|||||.+++.|.++..+|+++|++..+..++++++|+.+++.+++++++.+|+.+++.++++|++|||||++||+|
T Consensus 71 I~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~E 150 (352)
T 3qe9_Y 71 IKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYE 150 (352)
T ss_dssp CEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcc
Confidence 99999999999889999889999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHH--HHHhC--CCHHHHHHHHHHhCCCC
Q 016711 160 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELN--LTMDQFIDLCILSGCDY 235 (384)
Q Consensus 160 ADa~~A~L~~~g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v--~~~~g--l~~~q~id~~~L~G~Dy 235 (384)
||||||+|++.|.+++|+|+|+|++|||+++|++++...+. ...++.+.+ ++.+| ++++||+|+|+|+||||
T Consensus 151 ADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~ 226 (352)
T 3qe9_Y 151 ADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGN----GLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDY 226 (352)
T ss_dssp HHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTSE----EEEEEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSS
T ss_pred hHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCCC----cEEEeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999877654321 245777775 68889 99999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHh--CCHHHHHHHHhhc---cCCCCCCCc--hHHHHHHhCCCCCCChh
Q 016711 236 CDSIRGIGGQTALKLIRQH--GSIETILENINRE---RYQIPEDWP--YQEARRLFKEPEVVTDE 293 (384)
Q Consensus 236 ~~~i~giG~ktA~~li~~~--~sle~il~~~~~~---~~~~~~~~~--~~~~~~~~~~p~v~~~~ 293 (384)
++||||||+|||++||++| +|+|++++++++. +..+|++|. +..|+.+|+++.|.++.
T Consensus 227 ~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F~~q~V~dp~ 291 (352)
T 3qe9_Y 227 LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPI 291 (352)
T ss_dssp SCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHCEEEETT
T ss_pred CCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhCCCEEECCC
Confidence 9999999999999999999 7999999998753 568999998 57899999988777654
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=3.7e-48 Score=367.40 Aligned_cols=214 Identities=19% Similarity=0.260 Sum_probs=177.0
Q ss_pred cchHHHHhhhcCCCcccccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCce-
Q 016711 4 KGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKP- 82 (384)
Q Consensus 4 ~gL~~~l~~~~~~~~~~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~P- 82 (384)
+||.++|... +.++.. .+++++|||++|+||+|| +++|.+ |++||++++.++++. ++|
T Consensus 2 ~~~~~~~~~~------~~~~~~-~~~lllIDg~~llyRa~~-----------~~~G~p--av~Gf~~~l~~ll~~-~~p~ 60 (290)
T 1exn_A 2 KSWGKFIEEE------EAEMAS-RRNLMIVDGTNLGFRFKH-----------NNSKKP--FASSYVSTIQSLAKS-YSAR 60 (290)
T ss_dssp ------------------------CEEEEEEHHHHHHHHHH-----------HCSSSC--CHHHHHHHHHHHHHH-TTEE
T ss_pred cchHHHhhhc------cccccc-CCCEEEEECcHHHHHHHh-----------CCCCch--HHHHHHHHHHHHHHH-cCCC
Confidence 5778888543 345666 788999999999999998 245666 899999999999986 677
Q ss_pred --EEEEeCCCCchhhHHHHHHHhhhhcch-------HHHHHHHHhCCHHHHHHHhhhhccCCHHH-HHHHHHHHHh--cC
Q 016711 83 --IYVFDGQPPDLKKQELAKRYSKRADAT-------DDLAEAVEAGNKEDIEKFSKRTVKVTKQH-NDDCKRLLKL--MG 150 (384)
Q Consensus 83 --v~VFDG~~~~~K~~~~~~rk~~R~~~~-------~~l~~a~~~g~~~~~~~~~~~~~~vt~~~-~~~~~~lL~~--~G 150 (384)
++||||.+++||++++++||++|.++| +++ ..| ++.++++|++ ||
T Consensus 61 ~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L-----------------------~~q~~~~ikell~~~~~g 117 (290)
T 1exn_A 61 TTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKAL-----------------------DEQFFEYLKDAFELCKTT 117 (290)
T ss_dssp EEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHH-----------------------HHHHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhH-----------------------HHhhHHHHHHHHHhhCCC
Confidence 789999999999999999999999999 555 566 9999999999 99
Q ss_pred CCccccch-HHHHHHHHHHHc----CCeEEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCH-HHH
Q 016711 151 VPVVEAPS-EAEAQCAALCKS----GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM-DQF 224 (384)
Q Consensus 151 ip~i~ap~-EADa~~A~L~~~----g~~~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~-~q~ 224 (384)
||++.+|+ ||||+||+|++. |..+.|+|+|+|++||++++|.. ..+. ..+.++.+.+.+++|++| +||
T Consensus 118 ip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v--~~~~----~~~~~~~~~v~ek~Gv~p~~q~ 191 (290)
T 1exn_A 118 FPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSR--FSFT----TRREYHLRDMYEHHNVDDVEQF 191 (290)
T ss_dssp SCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEE--EETT----TTEEECGGGHHHHHSSSSHHHH
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEE--EECC----CCEEEcHHHHHHHcCCCHHHHH
Confidence 99999999 999999999985 76777999999999999998732 2222 357899999999999999 999
Q ss_pred HHHHHHhC--CCCCCCCCCCcHHHHHHHHHHhCCHHHHHHHHhhc
Q 016711 225 IDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 267 (384)
Q Consensus 225 id~~~L~G--~Dy~~~i~giG~ktA~~li~~~~sle~il~~~~~~ 267 (384)
+|+|+|+| ||+.+||||||||||++||++|||+|+|+++++++
T Consensus 192 iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 192 ISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp HHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCS
T ss_pred HHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999 88888899999999999999999999999999876
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=3e-50 Score=431.38 Aligned_cols=263 Identities=26% Similarity=0.344 Sum_probs=231.0
Q ss_pred cccccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHc-CCceEEEEeCCCCchhhHHH
Q 016711 20 EQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQEL 98 (384)
Q Consensus 20 ~~~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~-gi~Pv~VFDG~~~~~K~~~~ 98 (384)
..++++++|++++|||++|+||++|+++ +++++.|.+|++++||++++.++++. ++.|+|||||.++++|++++
T Consensus 4 ~~~l~~~~~~~llIDg~~~l~ra~~a~~-----~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~ 78 (832)
T 1bgx_T 4 MLPLFEPKGRVLLVDGHHLAYRTFHALK-----GLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAY 78 (832)
T ss_dssp SSCCCCCCTTSCCCCCSTHHHHTTSSCT-----TCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGG
T ss_pred ccCHHHhCCCEEEEEChHHHHHHHhcCC-----ccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccch
Confidence 4688999999999999999999999983 58999999999999999999999864 68999999999999999999
Q ss_pred HHHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccch-HHHHHHHHHHH----cCCe
Q 016711 99 AKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQV 173 (384)
Q Consensus 99 ~~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~-EADa~~A~L~~----~g~~ 173 (384)
++||++|.++|+++ ..|++.++++|++||||++++|| ||||+||+|++ .|..
T Consensus 79 ~~YKa~R~~~pe~l-----------------------~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~ 135 (832)
T 1bgx_T 79 GGYKAGRAPTPEDF-----------------------PRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYE 135 (832)
T ss_dssp GTTTSCCCCCCTTS-----------------------TTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccccChHHH-----------------------HHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCe
Confidence 99999999999888 57889999999999999999998 99999999998 5877
Q ss_pred EEEEcCCCcccccCCCeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhC--CCCCCCCCCCcHHHHHHHH
Q 016711 174 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLI 251 (384)
Q Consensus 174 ~~v~S~DsD~l~fg~~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~Dy~~~i~giG~ktA~~li 251 (384)
++|+|+|+|++||++++|++... .+ +.|+.+.+.+++|++|+||+|+|+|+| |||.+||||||+|||++||
T Consensus 136 v~IvS~DkDllql~~~~v~~~~~---~g----~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl 208 (832)
T 1bgx_T 136 VRILTADKDLYQLLSDRIHVLHP---EG----YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLL 208 (832)
T ss_dssp BCCCCSSTTCCTTCCTTBCBCCS---SS----CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTG
T ss_pred EEEEeCCCChhhcCcCCEEEEeC---CC----cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHH
Confidence 78999999999999999865432 11 568999999999999999999999999 9999999999999999999
Q ss_pred HHhCCHHHHHHHHhhccCCCCCCCch-H----HHHHHh-CCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCCH
Q 016711 252 RQHGSIETILENINRERYQIPEDWPY-Q----EARRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 320 (384)
Q Consensus 252 ~~~~sle~il~~~~~~~~~~~~~~~~-~----~~~~~~-~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~~ 320 (384)
++|||+|+|++++++++.++++++.. . .++++. ..++++.+.++ + .|..||.++|.+|| ++++|+.
T Consensus 209 ~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls~~L~~i~~d~~~~~~~-~-~~~~~d~~~l~~~~-~~~~f~~ 280 (832)
T 1bgx_T 209 EEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKVRTDLPLEVDF-A-KRREPDRERLRAFL-ERLEFGS 280 (832)
T ss_dssp GGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSGGGSSCCCSCCCCCCCC-C-CCCCCCHHHHHHHH-TTTTCCS
T ss_pred HHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHHHHHHhhccCCCCCCCh-h-HcCCccHHHHHHHH-HHcCCHH
Confidence 99999999999998877666665542 1 134443 45666665666 4 89999999999999 7999974
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.97 E-value=3.8e-31 Score=249.00 Aligned_cols=183 Identities=15% Similarity=0.070 Sum_probs=145.5
Q ss_pred CCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHH-HHHHHHHHHHc--CCce---EEEEeCC-CCchhhHHHH
Q 016711 27 FGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQG-MFTRTIRLLEA--GMKP---IYVFDGQ-PPDLKKQELA 99 (384)
Q Consensus 27 ~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g-~~~~~~~ll~~--gi~P---v~VFDG~-~~~~K~~~~~ 99 (384)
..+.++||||+++||++++ .+.+.+|.+|+++++ |+..+.++++. +.+| +++||+. .++||++.++
T Consensus 12 ~~~llLIDgssl~~ra~~~-------~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp 84 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTALV-------NFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAY 84 (305)
T ss_dssp SCCEEEEEHHHHHHHHHHH-------HSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHST
T ss_pred CCCEEEEeccHHHHHHHHH-------hcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCH
Confidence 3469999999999998653 377888999999987 88888888753 2455 5679987 6899999999
Q ss_pred HHHhhhhcchHHHHHHHHhCCHHHHHHHhhhhccCCHHHH-HHHHHHHHhcCCCccccch-HHHHHHHHHHH----cCCe
Q 016711 100 KRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQV 173 (384)
Q Consensus 100 ~rk~~R~~~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~-~~~~~lL~~~Gip~i~ap~-EADa~~A~L~~----~g~~ 173 (384)
+||++|.++|+++.. ..+.+ ..|+ +.++++|++||||++..|| ||||.||+|++ .|.-
T Consensus 85 ~YKanR~~~PeeL~~-----Q~~~l-----------~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~ 148 (305)
T 3h7i_A 85 YYKKNRGKAREESTW-----DWEGY-----------FESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHK 148 (305)
T ss_dssp TTTHHHHHHHHHCSS-----CHHHH-----------HHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCC
T ss_pred HhccCCCCCCHHHHH-----HHHHh-----------hhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCc
Confidence 999999999998710 00000 2344 7899999999999999999 99999999987 4666
Q ss_pred EEEEcCCCcccccCC-CeeEEEeecCCCCCcceEEEeHHHHHHHhCCCHHHHHHHHHHhCCCCCCCC---CCCcHH
Q 016711 174 YAVASEDMDSLTFGA-PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI---RGIGGQ 245 (384)
Q Consensus 174 ~~v~S~DsD~l~fg~-~~v~~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~~~i---~giG~k 245 (384)
+.|+|+|+|++|+.. ++|. ++.... .+.|.+++|+ |+|++|+++|+| |.+||| ||||++
T Consensus 149 V~IvSgDKDl~QLv~~~~V~--~~~~~~---------~~~V~ek~Gv-P~q~iD~~aL~G-DsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 149 ILIISSDGDFTQLHKYPNVK--QWSPMH---------KKWVKIKSGS-AEIDCMTKILKG-DKKDNVASVKVRSDF 211 (305)
T ss_dssp EEEECSSCCCGGGGGSSSEE--EEETTT---------TEEECSSCSC-HHHHHHHHHHHC-BGGGTBCCTTSCTTH
T ss_pred EEEEeCCCCccccccCCCeE--EEecCC---------HHHHHHHhCC-HHHHhhHHheeC-ccccCCCCCCcCCcc
Confidence 679999999999998 6653 222221 1336778998 999999999999 999976 578885
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=6.8e-08 Score=105.92 Aligned_cols=240 Identities=15% Similarity=0.203 Sum_probs=122.0
Q ss_pred CCccchHHHHhhhcCCCcccc---cccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHH
Q 016711 1 MGIKGLTKLLADNAPKSMKEQ---KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~---~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~ 77 (384)
|||++|..||.+.-|...+.. .+-++ --+.||.++++|.+.|..... .+....+-+...++...+.+++.+++
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~~~~e~--DnLYlDmNgIIH~c~h~~~~~--~~~~~~e~e~~~~if~yid~l~~~vr 76 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREHCIPEF--DNLYLDMNGIVHNCSHPDDNN--IHFHLEEEQIFQEIFNYVDKLFYLIK 76 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETTTSCCC--SEEEEEHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHCCchhhhccccCCCcC--CeEEEecchhhhhhcCCCCCC--CCCCCCHHHHHHHHHHHHHHHHheec
Confidence 999999999999877432111 11111 358999999999887643210 01100111122333444444444333
Q ss_pred cCCceE-EEEeCCCCchhhHHHHHHHhhhhc-chHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHH--------
Q 016711 78 AGMKPI-YVFDGQPPDLKKQELAKRYSKRAD-ATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLK-------- 147 (384)
Q Consensus 78 ~gi~Pv-~VFDG~~~~~K~~~~~~rk~~R~~-~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~-------- 147 (384)
- -+.+ +.+||.+|-.|......|+-+... +.....++...|....-..|..-+++.-......+.+.|+
T Consensus 77 P-rkll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~ 155 (1140)
T 2y35_A 77 P-QRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKIS 155 (1140)
T ss_dssp C-SSEEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred c-ceeEEEEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccccccCCccccCCCcHHHHHHHHHHHHHHHHHhc
Confidence 1 2223 469999997776655444433221 1111223334443322222222122211112222222221
Q ss_pred ----hcCCCccc----cchHHHHHHHHHHHc---------CCeEEEEcCCCcccccC----CCe--eEEEeecCCC--C-
Q 016711 148 ----LMGVPVVE----APSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APR--FLRHLMDPSS--R- 201 (384)
Q Consensus 148 ----~~Gip~i~----ap~EADa~~A~L~~~---------g~~~~v~S~DsD~l~fg----~~~--v~~~l~~~~~--~- 201 (384)
--++.+|. .|||+|--|-.+.+. +...+|++.|+|++.++ .++ ++|.-...+. +
T Consensus 156 ~d~~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~ 235 (1140)
T 2y35_A 156 TDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKR 235 (1140)
T ss_dssp HCGGGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTC
T ss_pred cCccccceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccc
Confidence 12556664 489999766555441 34667999999999886 233 2332111111 0
Q ss_pred ----CcceEEEeHHHHHHHh------------CCC----HHHHHHHHHHhCCCCCCCCCCCcHH
Q 016711 202 ----KIPVMEFEVAKILEEL------------NLT----MDQFIDLCILSGCDYCDSIRGIGGQ 245 (384)
Q Consensus 202 ----~~~~~~~~~~~v~~~~------------gl~----~~q~id~~~L~G~Dy~~~i~giG~k 245 (384)
...+..++...+.+.+ .++ .+.|+-+|.|+||||.+++|++.+.
T Consensus 236 ~~~~~~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~ 299 (1140)
T 2y35_A 236 TSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299 (1140)
T ss_dssp CCGGGCEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTT
T ss_pred ccccccceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccC
Confidence 1245567766554432 133 3567789999999999999988643
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=98.66 E-value=9.3e-08 Score=103.82 Aligned_cols=237 Identities=18% Similarity=0.268 Sum_probs=127.7
Q ss_pred CCccchHHHHhhhcCCCcccc---cccccCCCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHH
Q 016711 1 MGIKGLTKLLADNAPKSMKEQ---KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLE 77 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~---~l~~l~g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~ 77 (384)
|||+++..||.+.-|.++... .+-++ --+.||.++++|.+.+... .+.....-+ ..-+..+|..+-+++.
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~~~~~~pe~--DnLYlDmNgIIH~c~h~~~----~~~~~~~te-~e~~~~if~yid~l~~ 73 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLIDGSQIPEF--DNLYLDMNSILHNCTHGDG----SEVNSRLSE-EEVYSKIFSYIDHLFH 73 (1155)
T ss_pred CChHHHHHHHHHhCcchhhcccCCCCCcC--CeEEEecccceeeeecCCC----CccccCCCH-HHHHHHHHHHHHHHHH
Confidence 999999999999888754322 11122 2478999999998876432 111000000 0122233333334444
Q ss_pred cCCce---E-EEEeCCCCchhhHHHHHHHhhhhc-chHHHHHHHHhCCHHH-HHHHhhhhccCCHHHHHHHHHHHHh---
Q 016711 78 AGMKP---I-YVFDGQPPDLKKQELAKRYSKRAD-ATDDLAEAVEAGNKED-IEKFSKRTVKVTKQHNDDCKRLLKL--- 148 (384)
Q Consensus 78 ~gi~P---v-~VFDG~~~~~K~~~~~~rk~~R~~-~~~~l~~a~~~g~~~~-~~~~~~~~~~vt~~~~~~~~~lL~~--- 148 (384)
. ++| + ..+||.+|-.|......|+-+... +....+++...|+... -..|..-+++.-..-...+...|+.
T Consensus 74 ~-vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~ 152 (1155)
T 3pie_A 74 T-IKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIH 152 (1155)
T ss_pred h-cCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHH
Confidence 3 677 3 469999997777665555433221 2223344445553210 1112111222211222223222221
Q ss_pred ---------cCCCcccc----chHHHHHHHHHHHc---------CCeEEEEcCCCcccccCC----Ce--eEEEe--ecC
Q 016711 149 ---------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFGA----PR--FLRHL--MDP 198 (384)
Q Consensus 149 ---------~Gip~i~a----p~EADa~~A~L~~~---------g~~~~v~S~DsD~l~fg~----~~--v~~~l--~~~ 198 (384)
-++.+|.+ |||+|--|..+.+. +...+|++.|+|++.++- ++ ++|.- +..
T Consensus 153 ~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~ 232 (1155)
T 3pie_A 153 DKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGK 232 (1155)
T ss_pred HHhhCCcCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCc
Confidence 14455543 89999777666552 346779999999999972 22 34432 111
Q ss_pred CC------CCcceEEEeHHHHHHHh-------------CCCH----HHHHHHHHHhCCCCCCCCCCCcHH
Q 016711 199 SS------RKIPVMEFEVAKILEEL-------------NLTM----DQFIDLCILSGCDYCDSIRGIGGQ 245 (384)
Q Consensus 199 ~~------~~~~~~~~~~~~v~~~~-------------gl~~----~q~id~~~L~G~Dy~~~i~giG~k 245 (384)
.. ...++..++..-+.+.+ .++. +.|+-+|.|+||||.+++|.+.+.
T Consensus 233 ~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~ 302 (1155)
T 3pie_A 233 RSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLK 302 (1155)
T ss_pred ccccccccccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCcC
Confidence 11 11245567765444322 1232 456779999999999999987653
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=98.40 E-value=1.3e-06 Score=92.41 Aligned_cols=234 Identities=19% Similarity=0.263 Sum_probs=124.9
Q ss_pred CCccchHHHHhhhcCCCccccc------c--------c----ccCCC---EEEEehhHHHHHHHHhhhccCCCcccCcCC
Q 016711 1 MGIKGLTKLLADNAPKSMKEQK------F--------E----SYFGR---KIAIDASMSIYQFLIVVGRTGTEMLTNEAG 59 (384)
Q Consensus 1 MGI~gL~~~l~~~~~~~~~~~~------l--------~----~l~g~---~i~IDas~~lyr~~~a~~~~~~~~l~~~~G 59 (384)
|||+++..||.+.-|.++.++- + + +..|. -+.||-+++||.+.|... ...-.+ .
T Consensus 4 MGVP~ffRWLs~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~---~~~~~t-e- 78 (899)
T 3fqd_A 4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPED---RPAPET-E- 78 (899)
T ss_dssp CCHHHHHHHHHHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSS---SCCCCS-H-
T ss_pred cchHHHHHHHHHHCCccchhhcccccccccCCccccccccCCCCCCcccceEEEecchhhhhhcCCCC---CCCCCC-H-
Confidence 9999999999998887654210 1 0 11221 578999999999876431 111111 1
Q ss_pred CchhHHHHHHHHHHHHHHcCCce---E-EEEeCCCCchhhHHHHHHHhhhhcchHH--------HHHHHHhCCHH--H-H
Q 016711 60 EVTSHLQGMFTRTIRLLEAGMKP---I-YVFDGQPPDLKKQELAKRYSKRADATDD--------LAEAVEAGNKE--D-I 124 (384)
Q Consensus 60 ~~t~~l~g~~~~~~~ll~~gi~P---v-~VFDG~~~~~K~~~~~~rk~~R~~~~~~--------l~~a~~~g~~~--~-~ 124 (384)
..-+..+|..+-+++.. |+| + +.+||.+|-.|......|+-+....... .+.+...|... + .
T Consensus 79 --~e~~~~If~yid~l~~~-vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 155 (899)
T 3fqd_A 79 --DEMMVAVFEYTDRILAM-VRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENAT 155 (899)
T ss_dssp --HHHHHHHHHHHHHHHHH-HCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHH
T ss_pred --HHHHHHHHHHHHHHHHH-cCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCccccc
Confidence 11223333333334432 566 3 3699999988876655554432211111 11122233211 0 0
Q ss_pred --HHHhhhhccCCH--HHHHHHHHHHHh------------cCCCcccc----chHHHHHHHHHHHc---------CCeEE
Q 016711 125 --EKFSKRTVKVTK--QHNDDCKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYA 175 (384)
Q Consensus 125 --~~~~~~~~~vt~--~~~~~~~~lL~~------------~Gip~i~a----p~EADa~~A~L~~~---------g~~~~ 175 (384)
..|- +.-||+ .-...+...|+. -++.+|.+ |||+|--|..+.+. +...+
T Consensus 156 ~~~~fD--sN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~Hc 233 (899)
T 3fqd_A 156 KKKSWD--SNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHV 233 (899)
T ss_dssp SCCCCC--GGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEE
T ss_pred cccCCC--cCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEE
Confidence 0111 112222 222333333321 15556653 89999877766552 34677
Q ss_pred EEcCCCcccccC----CCe--eEEEeecCCC--------------------------CCcceEEEeHHHHHHHh----CC
Q 016711 176 VASEDMDSLTFG----APR--FLRHLMDPSS--------------------------RKIPVMEFEVAKILEEL----NL 219 (384)
Q Consensus 176 v~S~DsD~l~fg----~~~--v~~~l~~~~~--------------------------~~~~~~~~~~~~v~~~~----gl 219 (384)
|++.|.|++.+| .++ |+|.-...+. ...++..++..-+.+.+ .+
T Consensus 234 IyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~ 313 (899)
T 3fqd_A 234 VYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYV 313 (899)
T ss_dssp EECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTTTTCCBTTC----------CCEEEEEHHHHHHHHHHHHCC
T ss_pred EEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhhccccccccccccccccccCceEEEeHHHHHHHHHHHhcc
Confidence 999999999986 233 3443211000 01235566766554432 22
Q ss_pred -------CH----HHHHHHHHHhCCCCCCCCCCCcH
Q 016711 220 -------TM----DQFIDLCILSGCDYCDSIRGIGG 244 (384)
Q Consensus 220 -------~~----~q~id~~~L~G~Dy~~~i~giG~ 244 (384)
+. +.||.+|.|+||||.+++|.+-+
T Consensus 314 ~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 314 PNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred cCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 22 58888999999999999997654
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.74 E-value=0.00067 Score=48.95 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il~ 262 (384)
+.|||||++++..|++.|||+++|.+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 57999999999999999999998874
No 16
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.33 E-value=0.0022 Score=49.00 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=23.8
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~~ 263 (384)
.|||||+|++..|++.|+|+++|.+.
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~~i~~A 47 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIAELAAL 47 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHHHHHHS
T ss_pred hCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 59999999999999999999988753
No 17
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.13 E-value=0.009 Score=44.63 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~~ 263 (384)
+|||||+++|.+|++.|++++++.+.
T Consensus 28 ~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 28 TIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 69999999999999999999888754
No 18
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=95.00 E-value=0.019 Score=42.14 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~~ 263 (384)
+|||||+++|..|+..|+++++++..
T Consensus 18 ~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 18 GLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp TSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 49999999999999999999988753
No 19
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=94.99 E-value=0.018 Score=44.12 Aligned_cols=27 Identities=15% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il~~ 263 (384)
.+|||||+++|.+|++.|+++++++..
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 359999999999999999999888753
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=94.56 E-value=0.026 Score=43.43 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~ 262 (384)
+|||||+++|.+|++.|++++++++
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~~~l~~ 60 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSLEQLIA 60 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHS
T ss_pred cCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 4999999999999999999988764
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=94.29 E-value=0.024 Score=50.92 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il~ 262 (384)
++|||||+++|..|++.|||++++.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 67999999999999999999988764
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=91.53 E-value=0.034 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il~~ 263 (384)
++|||||+++|..|++.|||+++|.++
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp ---------------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 679999999999999999999988754
No 23
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=88.85 E-value=0.19 Score=44.86 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.6
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~ 262 (384)
+|||||+++|..|++.||+++++++
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~ 190 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFT 190 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTT
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 4999999999999999999888764
No 24
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.37 E-value=0.21 Score=43.92 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHHhCCHHHHHHHHhhcc----CCCCCCCchHHHHHHh--CCCCCCC-hhhhcccCCCCCCHHHHHHH
Q 016711 239 IRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF--KEPEVVT-DEEQLQIKWSAPDEEGLINF 311 (384)
Q Consensus 239 i~giG~ktA~~li~~~~sle~il~~~~~~~----~~~~~~~~~~~~~~~~--~~p~v~~-~~~~~~~~~~~pd~~~l~~f 311 (384)
|||||||+|..|+..|++ +.+.+.+.... .++| ....+.|..++ ++..+.. .... . .-.....+...+-
T Consensus 77 v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d~~~L~~vp-GIG~K~A~rI~~~lk~k~~~~~~~~-~-~~~~~~~~ea~~A 152 (191)
T 1ixr_A 77 VSGVGPKVALALLSALPP-RLLARALLEGDARLLTSAS-GVGRRLAERIALELKGKVPPHLLAG-E-KVESEAAEEAVMA 152 (191)
T ss_dssp SSCCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHTTST-TCCHHHHHHHHHHHTTTSCSCC-------------------
T ss_pred CCCcCHHHHHHHHHhCCh-HHHHHHHHhCCHHHHHhCC-CCCHHHHHHHHHHHHHhhccccccc-c-ccccccHHHHHHH
Confidence 999999999999999998 33333322110 1121 12233333333 1222211 0000 0 0001122345555
Q ss_pred HHHhcCCCHHHHHHHHHHH
Q 016711 312 LVSENGFNSDRVTKAIEKI 330 (384)
Q Consensus 312 ~~~~~~f~~~~v~~~~~~l 330 (384)
| ..+||++..+.+.+..+
T Consensus 153 L-~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 153 L-AALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------
T ss_pred H-HHcCCCHHHHHHHHHHH
Confidence 5 47999998888888776
No 25
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=87.38 E-value=0.36 Score=47.01 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=23.1
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~ 262 (384)
.||||||.+|..||.+|||++.+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHh
Confidence 3899999999999999999998876
No 26
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=86.82 E-value=2 Score=37.29 Aligned_cols=102 Identities=23% Similarity=0.236 Sum_probs=56.5
Q ss_pred CCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhhhhc
Q 016711 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRAD 107 (384)
Q Consensus 28 g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~ 107 (384)
-+.|+|||++..|.. .. . +. -.+.++..-+-.+.+.|.+++.||+ |.++++. .|..
T Consensus 24 lR~IVIDGsNVA~~~--g~-----~------~~--Fs~rgI~~aV~yf~~rGh~~v~Vfv---P~~r~~~------~~~~ 79 (185)
T 3v32_B 24 LRPVVIDGSNVAMSH--GN-----K------EV--FSCRGILLAVNWFLERGHTDITVFV---PSWRKEQ------PRPD 79 (185)
T ss_dssp BCCEEEEHHHHHHHH--TT-----T------TS--EEHHHHHHHHHHHHHTTCCCEEEEE---EGGGGSC------CCTT
T ss_pred CCeEEEeCHHHHhhh--CC-----C------CC--cCHHHHHHHHHHHHHcCCCceEEEe---chHhhhc------cccc
Confidence 368999999988742 11 0 01 1234444434455678999998998 4443221 0100
Q ss_pred chHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccch---------HHHHHHHHHHHcCCeEEEEc
Q 016711 108 ATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS---------EAEAQCAALCKSGQVYAVAS 178 (384)
Q Consensus 108 ~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~---------EADa~~A~L~~~g~~~~v~S 178 (384)
.+ ++. .+.+.++.+ .|+-++.-.+ .+|..+.++|...... |||
T Consensus 80 ~~------------------------~~d--~~~L~~L~~-~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~~g~-IVS 131 (185)
T 3v32_B 80 VP------------------------ITD--QHILRELEK-KKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGI-VVS 131 (185)
T ss_dssp SC------------------------EEC--THHHHHHHH-TTCEEEECCCC-------CCHHHHHHHHHHHTTCE-EEC
T ss_pred CC------------------------CCC--HHHHHHHHH-CCCEEECCCcccCCCcccCccHHHHHHHHHHcCCE-EEe
Confidence 00 000 111333333 4766665554 3788899999876664 779
Q ss_pred CCC
Q 016711 179 EDM 181 (384)
Q Consensus 179 ~Ds 181 (384)
+|.
T Consensus 132 ND~ 134 (185)
T 3v32_B 132 NDT 134 (185)
T ss_dssp SCC
T ss_pred Ccc
Confidence 874
No 27
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=85.59 E-value=0.36 Score=42.83 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=17.5
Q ss_pred CCCCcHHHHHHHHHHhCC
Q 016711 239 IRGIGGQTALKLIRQHGS 256 (384)
Q Consensus 239 i~giG~ktA~~li~~~~s 256 (384)
|+|||||+|..|+..|++
T Consensus 78 V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSA 95 (203)
T ss_dssp SSSCCHHHHHHHHHHSCH
T ss_pred CCCcCHHHHHHHHhhCCh
Confidence 999999999999999997
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=82.52 E-value=3.5 Score=36.85 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=56.6
Q ss_pred CCEEEEehhHHHHHHHHhhhccCCCcccCcCCCchhHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhhhhc
Q 016711 28 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRAD 107 (384)
Q Consensus 28 g~~i~IDas~~lyr~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~gi~Pv~VFDG~~~~~K~~~~~~rk~~R~~ 107 (384)
-+.|+|||++..|.- .. . +.+ ...|+..-+-.+.+.|.+++.||+ |.++.+. .|..
T Consensus 24 lR~IVIDGsNVA~~~--g~-----~------~~F--s~rgI~~aV~yF~~RGh~~V~Vfv---P~~r~~~------~~~~ 79 (223)
T 3v33_A 24 LRPVVIDGSNVAMSH--GN-----K------EVF--SCRGILLAVNWFLERGHTDITVFV---PSWRKEQ------PRPD 79 (223)
T ss_dssp BCCEEEEHHHHHHHS--SS-----T------TSE--EHHHHHHHHHHHHTTTCCCEEEEE---EGGGGSC------CCTT
T ss_pred CCeEEEeCHHHHhhh--CC-----C------CCc--CHHHHHHHHHHHHHcCCCceEEEe---chhhhcc------cccc
Confidence 368999999988731 10 0 111 234554444456678999898996 4443221 0100
Q ss_pred chHHHHHHHHhCCHHHHHHHhhhhccCCHHHHHHHHHHHHhcCCCccccchH---------HHHHHHHHHHcCCeEEEEc
Q 016711 108 ATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE---------AEAQCAALCKSGQVYAVAS 178 (384)
Q Consensus 108 ~~~~l~~a~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gip~i~ap~E---------ADa~~A~L~~~g~~~~v~S 178 (384)
.+ ++. .+.+.+|. ..|+-++.-.++ +|..+.++|...... |||
T Consensus 80 ~~------------------------~~d--~~~L~~L~-k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~~~g~-IVS 131 (223)
T 3v33_A 80 VP------------------------ITD--QHILRELE-KKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGI-VVS 131 (223)
T ss_dssp SC------------------------EES--THHHHHHH-HTTCEEEECEEEETTEEEECCHHHHHHHHHHHTTCE-EEC
T ss_pred CC------------------------CCc--HHHHHHHH-HCCCEEECCCCCcCCccccccchHHHHHHHHHcCCE-EEe
Confidence 00 000 11233333 357766665553 888899999876664 778
Q ss_pred CCC
Q 016711 179 EDM 181 (384)
Q Consensus 179 ~Ds 181 (384)
+|.
T Consensus 132 ND~ 134 (223)
T 3v33_A 132 NDT 134 (223)
T ss_dssp SCC
T ss_pred Ccc
Confidence 873
No 29
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=78.51 E-value=1 Score=40.06 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHhCCC-HHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCHHHHHHHHhhcc----CCCCCCCchHHHHHHhC--C
Q 016711 214 LEELNLT-MDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLFK--E 286 (384)
Q Consensus 214 ~~~~gl~-~~q~id~~~L~G~Dy~~~i~giG~ktA~~li~~~~sle~il~~~~~~~----~~~~~~~~~~~~~~~~~--~ 286 (384)
...||+. .+.--.+..|.. |+|||||+|..++..|+. +.+...+.... ..+| ..-.+.|..+.. .
T Consensus 73 ~~LyGF~~~~Er~lf~~L~s------v~GIGpk~A~~Ils~~~~-~~l~~aI~~~d~~~L~~vp-GIG~KtA~rIi~elk 144 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLLS------VSGVGPRLAMAALAVHDA-PALRQVLADGNVAALTRVP-GIGKRGAERMVLELR 144 (212)
T ss_dssp EEEEEESSHHHHHHHHHHHT------STTCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHTST-TCCHHHHHHHHHHHT
T ss_pred cceEecCcHHHHHHHHHhcC------cCCcCHHHHHHHHHhCCH-HHHHHHHHhCCHHHHhhCC-CCCHHHHHHHHHHHH
Confidence 4456663 333333444443 999999999999999885 33332221100 0111 111222222221 1
Q ss_pred CCCCC-hhhhcccCCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 016711 287 PEVVT-DEEQLQIKWSAP-DEEGLINFLVSENGFNSDRVTKAIEKI 330 (384)
Q Consensus 287 p~v~~-~~~~~~~~~~~p-d~~~l~~f~~~~~~f~~~~v~~~~~~l 330 (384)
..+.. .... .-.-... ..+...+-| ..+||++..+.+.+..+
T Consensus 145 ~kl~~~~~~~-~~~~~~~~~~~ea~~AL-~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 145 DKVGVAATGG-ALSTNGHAVRSPVVEAL-VGLGFAAKQAEEATDTV 188 (212)
T ss_dssp TTCC--------------CCHHHHHHHH-HHTTCCHHHHHHHHHHH
T ss_pred Hhhccccccc-cccccCcccHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 11110 0000 0000011 234555555 47999999999998877
No 30
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=77.61 E-value=0.54 Score=38.61 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=18.3
Q ss_pred CCCCcHHHHHHHHHH--hCCHHHHH
Q 016711 239 IRGIGGQTALKLIRQ--HGSIETIL 261 (384)
Q Consensus 239 i~giG~ktA~~li~~--~~sle~il 261 (384)
+|||||++|-++|+. |.|+|+++
T Consensus 68 LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 68 YRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp STTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred CCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 799999999999954 55666655
No 31
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=74.73 E-value=0.61 Score=42.42 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHH-hCCHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQ-HGSIETIL 261 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~-~~sle~il 261 (384)
..||||||++|..|+.. |++++.|.
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp --------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 36899999999999998 99988885
No 32
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=72.05 E-value=5.2 Score=38.71 Aligned_cols=41 Identities=34% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHhCCHHHHHHHHh
Q 016711 219 LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 265 (384)
Q Consensus 219 l~~~q~id~~~L~G~Dy~~~i~giG~ktA~~li~~~~sle~il~~~~ 265 (384)
++.++...+..|.- +||||+++..+|++.||+.+++++.+.
T Consensus 17 m~~~e~~~wL~L~~------~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLIR------AENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHHT------STTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 45566666666665 799999999999999999999988653
No 33
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=68.88 E-value=5.8 Score=40.57 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=19.0
Q ss_pred CCCCCcHHHHHHHHHH-hCCHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ-HGSIETILENI 264 (384)
Q Consensus 238 ~i~giG~ktA~~li~~-~~sle~il~~~ 264 (384)
+|+|||||+|.+|+.. +.|++++.+.+
T Consensus 101 ~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 101 GVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 4777888888887765 45677776653
No 34
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.81 E-value=2.7 Score=43.82 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il~ 262 (384)
.+|||||+++|..|++.|+|++++.+
T Consensus 515 lgi~~VG~~~Ak~La~~Fgsl~~l~~ 540 (671)
T 2owo_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (671)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred hcccCccHHHHHHHHHHcCCHHHHHh
Confidence 36899999999999999999988754
No 35
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=68.72 E-value=3.5 Score=38.60 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHHHhh
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILENINR 266 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~~~~~ 266 (384)
.||||++..|..++.+|+|+..++++++.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 38999999999999999999999999865
No 36
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=68.25 E-value=1.1 Score=46.33 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~~ 263 (384)
||||||+++|..|++.|+|++.+.+.
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp --------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 58999999999999999999887754
No 37
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=67.25 E-value=2.5 Score=30.63 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCCCCcHHHHHHHHHHh
Q 016711 238 SIRGIGGQTALKLIRQH 254 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~ 254 (384)
.|||||+++|.+++..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 48999999999999864
No 38
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=64.68 E-value=3.1 Score=40.14 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHHhCCHHHHHHH
Q 016711 239 IRGIGGQTALKLIRQHGSIETILEN 263 (384)
Q Consensus 239 i~giG~ktA~~li~~~~sle~il~~ 263 (384)
||+||++.|-+|+.+|||+++|+.+
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 7999999999999999999999864
No 39
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=63.96 E-value=1.8 Score=33.51 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCCCCcHHHHHHHHHH--hCCHHHH
Q 016711 238 SIRGIGGQTALKLIRQ--HGSIETI 260 (384)
Q Consensus 238 ~i~giG~ktA~~li~~--~~sle~i 260 (384)
.|||||+++|.++|.. |.|++++
T Consensus 30 ~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 30 QYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 4799999999999983 3454444
No 40
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=63.61 E-value=4.3 Score=38.60 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCCCcHHHHHHHHHH-hCCHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ-HGSIETILEN 263 (384)
Q Consensus 238 ~i~giG~ktA~~li~~-~~sle~il~~ 263 (384)
+|||||||||.+|..+ +.|++++.+.
T Consensus 100 ~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 4999999999999876 4588888764
No 41
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=63.52 E-value=5.3 Score=35.06 Aligned_cols=47 Identities=15% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhCCC---CC--CCCCCCcHHHHHHHHHH-----hCCHHHHHHHHh
Q 016711 219 LTMDQFIDLCILSGCD---YC--DSIRGIGGQTALKLIRQ-----HGSIETILENIN 265 (384)
Q Consensus 219 l~~~q~id~~~L~G~D---y~--~~i~giG~ktA~~li~~-----~~sle~il~~~~ 265 (384)
-..+.|+++..-++-- .. ..+||||+++|..+|.. |.|+|++.+.+.
T Consensus 112 ~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~ 168 (205)
T 2i5h_A 112 QDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVK 168 (205)
T ss_dssp TTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHST
T ss_pred hchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcC
Confidence 3567888875544421 11 14799999999999974 778888877543
No 42
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=61.88 E-value=5 Score=41.02 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHH--hCCHHHHHHHHh
Q 016711 239 IRGIGGQTALKLIRQ--HGSIETILENIN 265 (384)
Q Consensus 239 i~giG~ktA~~li~~--~~sle~il~~~~ 265 (384)
|+|||||+|..|+.. +.+++++.+.+.
T Consensus 98 v~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 98 VPGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp STTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 888999999999886 468887776653
No 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=59.98 E-value=4.4 Score=38.56 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCCCCcHHHHHHHHHH-hCCHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ-HGSIETILE 262 (384)
Q Consensus 238 ~i~giG~ktA~~li~~-~~sle~il~ 262 (384)
+|||||||||.+|..+ +.|++++.+
T Consensus 102 ~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 102 RVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 4999999999999887 347888776
No 44
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=59.80 E-value=4.2 Score=42.31 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.2
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETIL 261 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il 261 (384)
-||||||+++|..|++.|+|++++.
T Consensus 510 lGI~~VG~~~Ak~La~~Fgsl~~l~ 534 (667)
T 1dgs_A 510 LGLPGVGEVLARNLARRFGTMDRLL 534 (667)
T ss_dssp TTCSSCCHHHHHHHHHTTSBHHHHT
T ss_pred hccCCccHHHHHHHHHHcCCHHHHH
Confidence 3689999999999999999998874
No 45
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=59.73 E-value=5.2 Score=38.77 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCCCCcHHHHHHHHHH-hCCHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ-HGSIETILE 262 (384)
Q Consensus 238 ~i~giG~ktA~~li~~-~~sle~il~ 262 (384)
+|||||||||.+|.++ +.|++++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 4999999999999887 347888775
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=59.66 E-value=7.2 Score=34.58 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCC--CCCCCCcHHHHHHHHHHhC
Q 016711 219 LTMDQFIDLCILSGCDYC--DSIRGIGGQTALKLIRQHG 255 (384)
Q Consensus 219 l~~~q~id~~~L~G~Dy~--~~i~giG~ktA~~li~~~~ 255 (384)
++++.|. -+++.+ |.. ..|||||+|||-+++.++.
T Consensus 108 ~~~~~l~-~aI~~~-d~~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 108 HDAPALR-QVLADG-NVAALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp SCHHHHH-HHHHTT-CHHHHHTSTTCCHHHHHHHHHHHT
T ss_pred CCHHHHH-HHHHhC-CHHHHhhCCCCCHHHHHHHHHHHH
Confidence 3455543 234444 443 2699999999999998764
No 47
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=57.38 E-value=5.7 Score=38.14 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=19.9
Q ss_pred CCCCCcHHHHHHHHHH-hCCHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ-HGSIETIL 261 (384)
Q Consensus 238 ~i~giG~ktA~~li~~-~~sle~il 261 (384)
+|||||||||.+|.++ +.|++++.
T Consensus 106 ~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4999999999999877 34777776
No 48
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=55.49 E-value=7.8 Score=39.69 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCCcc
Q 016711 141 DCKRLLKLMGVPVV 154 (384)
Q Consensus 141 ~~~~lL~~~Gip~i 154 (384)
+..+.|+.+|+|+.
T Consensus 241 e~l~~L~~~Gf~v~ 254 (586)
T 4glx_A 241 GRLLQFKKWGLPVS 254 (586)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCc
Confidence 44567788998864
No 49
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=50.09 E-value=6.7 Score=34.66 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=12.9
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.+||||+|+|.+|.-
T Consensus 30 ~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAF 44 (212)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 589999999988864
No 50
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=46.34 E-value=15 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
.|+.+.+..++ ++||+++.+..+++.
T Consensus 2 ~p~e~~i~~L~--~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 2 TPKSLAVEELS--GMGFTEEEAHNALEK 27 (43)
T ss_dssp CHHHHHHHHHH--TTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46777777775 799999888877754
No 51
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=44.64 E-value=9.1 Score=34.15 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.9
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.+||||+|+|.+|.-
T Consensus 16 ~LPGIG~KSA~RlA~ 30 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAF 30 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHH
Confidence 589999999988864
No 52
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=43.10 E-value=12 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.0
Q ss_pred CCCCCcHHHHHHHHHHh
Q 016711 238 SIRGIGGQTALKLIRQH 254 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~ 254 (384)
.|||||+++|.+|+..+
T Consensus 44 ~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 44 SLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HSTTCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHH
Confidence 58999999999999764
No 53
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=40.48 E-value=14 Score=32.01 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCCCCcHHHHHHHHHHhC
Q 016711 238 SIRGIGGQTALKLIRQHG 255 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~ 255 (384)
.+||||+|+|-+++.++.
T Consensus 111 ~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 111 SASGVGRRLAERIALELK 128 (191)
T ss_dssp TSTTCCHHHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHHHH
Confidence 689999999999988764
No 54
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=40.03 E-value=3.8 Score=23.18 Aligned_cols=15 Identities=53% Similarity=0.862 Sum_probs=10.4
Q ss_pred ccCCCCccccccCcCc
Q 016711 335 NKSSQGRLESFFKPVA 350 (384)
Q Consensus 335 ~~~~q~~l~~ff~~~~ 350 (384)
.+..| +||+||+.-+
T Consensus 6 ~~g~~-TLesFFK~L~ 20 (26)
T 2zvk_U 6 PEGMQ-TLESFFKPLT 20 (26)
T ss_pred ccccc-cHHHHhccCC
Confidence 34455 8999998543
No 55
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=37.24 E-value=24 Score=36.05 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCHHHHHH
Q 016711 237 DSIRGIGGQTALKLIRQHGSIETILE 262 (384)
Q Consensus 237 ~~i~giG~ktA~~li~~~~sle~il~ 262 (384)
-|||+||..+|..|.+.|+|++.+.+
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~ 540 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHc
Confidence 36999999999999999999998875
No 56
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=35.37 E-value=23 Score=36.00 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=27.2
Q ss_pred HHHHHhCC-CHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHH
Q 016711 212 KILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 253 (384)
Q Consensus 212 ~v~~~~gl-~~~q~id~~~L~G~Dy~~~i~giG~ktA~~li~~ 253 (384)
.+++.+|+ +++++.. ++..| | ...+||||+|||-+++..
T Consensus 108 ~~~~~lg~~~~~~l~~-a~~~~-~-l~~~~GiG~k~a~~i~~~ 147 (575)
T 3b0x_A 108 LLYEGLGIDSLEKLKA-ALDRG-D-LTRLKGFGPKRAERIREG 147 (575)
T ss_dssp HHHHTSCCCSHHHHHH-HHHHT-G-GGGSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHH-HHHcC-C-cccCCCCCccHHHHHHHH
Confidence 34445565 7888776 44456 6 346899999999998654
No 57
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=34.49 E-value=17 Score=31.80 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=12.8
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.+|||||+||--++.
T Consensus 121 ~lpGIG~kTA~~il~ 135 (207)
T 3fhg_A 121 NIKGIGMQEASHFLR 135 (207)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 589999999987764
No 58
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=34.24 E-value=4.5 Score=37.79 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCCCCcHHHHHHHHHHhCCHHHHHHHHhh
Q 016711 238 SIRGIGGQTALKLIRQHGSIETILENINR 266 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~sle~il~~~~~ 266 (384)
.|||||+++|..++..|+++..+++.++.
T Consensus 237 ~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 237 QVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp CSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 48999999999999999999999999874
No 59
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=34.06 E-value=19 Score=31.54 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.9
Q ss_pred CCCCCcHHHHHHHHHHh
Q 016711 238 SIRGIGGQTALKLIRQH 254 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~ 254 (384)
.+||||+|+|-+++.++
T Consensus 112 ~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 112 KLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TSTTCCHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 68999999999998764
No 60
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.73 E-value=49 Score=22.92 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 7 GPPEDCVTTIV--SMGFSRDQALKALRA 32 (63)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 57888888886 699999888887754
No 61
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.08 E-value=39 Score=21.85 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
.+|.+.+..++ ++||+++++..++..
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 7 GVNQQQLQQLM--DMGFTREHAMEALLN 32 (47)
T ss_dssp SSCHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 56888888886 699999888877754
No 62
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=31.14 E-value=43 Score=27.98 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCCC-----ccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~Gip-----~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
++..+.+-+.+.|+..|+. ++..|| |-=-.+..|++.+..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1rvv_A 26 ITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAII 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 3456778889999999975 677898 8778888889888777766
No 63
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=31.11 E-value=21 Score=31.52 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.5
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.+||||++||--++.
T Consensus 125 ~lpGIG~kTA~~il~ 139 (218)
T 1pu6_A 125 DQKGIGKESADAILC 139 (218)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 489999999977665
No 64
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=30.39 E-value=22 Score=31.38 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=12.8
Q ss_pred CCCCCcHHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ 253 (384)
Q Consensus 238 ~i~giG~ktA~~li~~ 253 (384)
++||||+|||--++..
T Consensus 129 ~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRN 144 (214)
T ss_dssp HSTTCCHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHH
Confidence 5899999999776653
No 65
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=29.60 E-value=44 Score=27.85 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCCC-----ccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~Gip-----~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
|+..+.+-+.+.|+..|+. ++..|| |-=-.+..|++.+..|+|+
T Consensus 26 I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1hqk_A 26 LVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVI 76 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 3456778889999999874 667898 8777888888888777776
No 66
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=29.53 E-value=55 Score=32.99 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhc---CCCccccchHHHHHHHHHHHcCC
Q 016711 137 QHNDDCKRLLKLM---GVPVVEAPSEAEAQCAALCKSGQ 172 (384)
Q Consensus 137 ~~~~~~~~lL~~~---Gip~i~ap~EADa~~A~L~~~g~ 172 (384)
+.+.++.+-|+.+ |++.++.-|++.+++..|++.-.
T Consensus 61 ~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~ 99 (538)
T 3tvs_A 61 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR 99 (538)
T ss_dssp HHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcC
Confidence 3345566666667 77777777777777777766433
No 67
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=29.28 E-value=22 Score=31.45 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=13.5
Q ss_pred CCCCCcHHHHHHHHHHhC
Q 016711 238 SIRGIGGQTALKLIRQHG 255 (384)
Q Consensus 238 ~i~giG~ktA~~li~~~~ 255 (384)
.+||||+|||--++.-++
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 479999999977664333
No 68
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=28.58 E-value=43 Score=26.46 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHhC
Q 016711 239 IRGIGGQTALKLIRQHG 255 (384)
Q Consensus 239 i~giG~ktA~~li~~~~ 255 (384)
|.|||..+|..++++.+
T Consensus 21 I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 21 IYGVGKTRSKAILAAAG 37 (114)
T ss_dssp STTCCHHHHHHHHHHTT
T ss_pred hcCcCHHHHHHHHHHcC
Confidence 78999999999998765
No 69
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=28.27 E-value=25 Score=31.03 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.8
Q ss_pred CCCCCcHHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIRQ 253 (384)
Q Consensus 238 ~i~giG~ktA~~li~~ 253 (384)
.|||||++||--++..
T Consensus 119 ~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 119 DLPGVGKYTCAAVMCL 134 (221)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 3899999999876653
No 70
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=28.24 E-value=39 Score=30.87 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=58.7
Q ss_pred eHHHHHHHhCCCHH-------HHHHHHHHhCCCCCC-------C--------------------CCCCcHHHHHHHHHHh
Q 016711 209 EVAKILEELNLTMD-------QFIDLCILSGCDYCD-------S--------------------IRGIGGQTALKLIRQH 254 (384)
Q Consensus 209 ~~~~v~~~~gl~~~-------q~id~~~L~G~Dy~~-------~--------------------i~giG~ktA~~li~~~ 254 (384)
++..+....|++|+ .|-.++.++.+|.-. | -.|+|-|||-.|++.|
T Consensus 352 tlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllraf 431 (519)
T 2csb_A 352 TLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAF 431 (519)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHh
Confidence 45566778888884 333445555556321 1 1599999999999999
Q ss_pred CCHHHHHHHHhhcc---CCCCCCCchHHHHHHhCCCCCCChhhhcccCCCCCCHHHHHHHHHHhcCCC
Q 016711 255 GSIETILENINRER---YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 319 (384)
Q Consensus 255 ~sle~il~~~~~~~---~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~pd~~~l~~f~~~~~~f~ 319 (384)
|+.|.+-+-..+.. ..--+..- ..+ +...|+--.. -+.....|.+....++...-|++
T Consensus 432 gnpervkqlarefeieklasvegvg-erv----lrslvpgyas--lisirgidreraerllkkyggys 492 (519)
T 2csb_A 432 GNPERVKQLAREFEIEKLASVEGVG-ERV----LRSLVPGYAS--LISIRGIDRERAERLLKKYGGYS 492 (519)
T ss_dssp SSHHHHHHHHHTTCHHHHHTSTTCS-HHH----HHHHSTTHHH--HHTSTTCCHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHHHhHHHHhhccchH-HHH----HHHhccchhh--heeeccccHHHHHHHHHHhCChh
Confidence 99998766443210 00001100 011 1111222122 25667789999888885444553
No 71
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=28.10 E-value=53 Score=27.44 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcCC----Cccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMGV----PVVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~Gi----p~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
|+..+.+-+.+.|...|+ .++..|| |-=-.+..|++.+..|+|+
T Consensus 27 I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (156)
T 1c2y_A 27 VTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 76 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 345677888899999986 4778898 7777778888888777776
No 72
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=27.82 E-value=25 Score=31.02 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.9
Q ss_pred CCCCcHHHHHHHHH
Q 016711 239 IRGIGGQTALKLIR 252 (384)
Q Consensus 239 i~giG~ktA~~li~ 252 (384)
+||||++||--++.
T Consensus 114 lpGIG~~TA~~il~ 127 (225)
T 1kg2_A 114 LPGVGRSTAGAILS 127 (225)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 89999999877664
No 73
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=27.81 E-value=25 Score=31.28 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.3
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.|||||++||--++.
T Consensus 142 ~lpGIG~kTA~~ill 156 (233)
T 2h56_A 142 AIKGIGQWTAEMFMM 156 (233)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 489999999877654
No 74
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.50 E-value=9.8 Score=31.84 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhC
Q 016711 239 IRGIGGQTALKLIRQHG 255 (384)
Q Consensus 239 i~giG~ktA~~li~~~~ 255 (384)
|.|||..+|..++++.+
T Consensus 33 I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 33 IKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHHHcC
Confidence 78999999999999865
No 75
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.46 E-value=62 Score=23.33 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
.+|.+.|..++ ++||++++++++|..
T Consensus 7 ~~~e~~v~~L~--~MGF~~~~a~~AL~~ 32 (74)
T 2dag_A 7 GLDESVIIQLV--EMGFPMDACRKAVYY 32 (74)
T ss_dssp SSCHHHHHHHH--HHSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46888888886 699999988888764
No 76
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=27.33 E-value=49 Score=27.74 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHh-cCCC-----ccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKL-MGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~-~Gip-----~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
|+..+.+-+.+.|.. .|+. ++..|| |-=-.+..|++.+..|+|+
T Consensus 31 I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 82 (159)
T 1kz1_A 31 AIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVI 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 345677788888888 8865 778998 8777888888877766665
No 77
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.12 E-value=73 Score=22.15 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
.+|.+.|..++ ++||+++++..+|+.
T Consensus 7 ~~~~~~I~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 1wji_A 7 GVDEKALKHIT--EMGFSKEASRQALMD 32 (63)
T ss_dssp SSCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46778887775 799999988777653
No 78
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=26.23 E-value=56 Score=27.05 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCccccc----------hHHHHHHH----HHHHcCCeEEEEcCCCcccccC
Q 016711 142 CKRLLKLMGVPVVEAP----------SEAEAQCA----ALCKSGQVYAVASEDMDSLTFG 187 (384)
Q Consensus 142 ~~~lL~~~Gip~i~ap----------~EADa~~A----~L~~~g~~~~v~S~DsD~l~fg 187 (384)
.++.|+..|+.++..| ..+|-.+| .++..-...+++|+|+|+....
T Consensus 66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv 125 (165)
T 2qip_A 66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLV 125 (165)
T ss_dssp HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH
T ss_pred HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHH
Confidence 3456667788554333 24453333 2233445667999999998653
No 79
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=25.87 E-value=46 Score=29.07 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCcccc-----------chHHHHHHHHHHHcCC
Q 016711 142 CKRLLKLMGVPVVEA-----------PSEAEAQCAALCKSGQ 172 (384)
Q Consensus 142 ~~~lL~~~Gip~i~a-----------p~EADa~~A~L~~~g~ 172 (384)
-.+.|+.+|+||-.. ..|+||.+|||...|.
T Consensus 156 ~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 156 KMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp HHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred HHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 345667789998433 4599999999988664
No 80
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=25.65 E-value=38 Score=28.33 Aligned_cols=44 Identities=34% Similarity=0.373 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcC-C-----Cccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMG-V-----PVVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~G-i-----p~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
++..+.+-+.+.|...| + .++..|| |-=-.+..|++.+..|+|+
T Consensus 26 I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 77 (156)
T 3nq4_A 26 INDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVV 77 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 34667788899999999 5 5678898 8888888888888766665
No 81
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.60 E-value=35 Score=23.97 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 301 SAPDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 301 ~~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
..||.+.+..++ ++||+.+++.++|..
T Consensus 6 ~~~~e~~v~~L~--~MGF~~~~a~~AL~~ 32 (64)
T 2crn_A 6 SGSSPSLLEPLL--AMGFPVHTALKALAA 32 (64)
T ss_dssp CCCSCSSHHHHH--HTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 456777777775 699999998888753
No 82
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=25.48 E-value=31 Score=28.94 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCC-----Cccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~Gi-----p~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
|+..+.+-+.+.|+..|+ .++..|| |-=-.+..|++.+..|+|+
T Consensus 24 I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 74 (158)
T 1di0_A 24 IVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 445677888888888885 4778898 8778888899888777776
No 83
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=24.96 E-value=31 Score=30.56 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.3
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.+||||++||--++.
T Consensus 117 ~lpGIG~~TA~~il~ 131 (226)
T 1orn_A 117 KLPGVGRKTANVVVS 131 (226)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred HCCCccHHHHHHHHH
Confidence 389999999877664
No 84
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=24.65 E-value=30 Score=30.15 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.8
Q ss_pred CCCCcHHHHHHHHH
Q 016711 239 IRGIGGQTALKLIR 252 (384)
Q Consensus 239 i~giG~ktA~~li~ 252 (384)
+||||++||--++.
T Consensus 114 l~GIG~~tA~~il~ 127 (211)
T 2abk_A 114 LPGVGRKTANVVLN 127 (211)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 79999999877664
No 85
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.57 E-value=43 Score=22.01 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIE 328 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~ 328 (384)
+++.+.+..++ ++||+++++..+++
T Consensus 6 ~~~~~~i~~L~--~MGF~~~~a~~AL~ 30 (49)
T 1ify_A 6 SEYETMLTEIM--SMGYERERVVAALR 30 (49)
T ss_dssp HHHHHHHHHHH--HTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHH--HcCCCHHHHHHHHH
Confidence 34455666654 79999998888875
No 86
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.51 E-value=82 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 301 SAPDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 301 ~~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
..++.+.|..++ ++||++++++.+|+.
T Consensus 26 ~~~~~~~v~~L~--~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 26 SDIDQSSVDTLL--SFGFAEDVARKALKA 52 (73)
T ss_dssp CSSCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 468888888886 799999998887753
No 87
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.32 E-value=79 Score=23.45 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 301 SAPDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 301 ~~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
..|+.+.+..++ ++||++++++.+|+.
T Consensus 26 ~~~~ee~I~~Lv--~MGF~~~~A~~AL~~ 52 (83)
T 1veg_A 26 ASPSQESINQLV--YMGFDTVVAEAALRV 52 (83)
T ss_dssp CCCCHHHHHHHH--HHSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 456788887776 799999998888764
No 88
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=24.31 E-value=17 Score=20.15 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=9.9
Q ss_pred CCCCccccccCcC
Q 016711 337 SSQGRLESFFKPV 349 (384)
Q Consensus 337 ~~q~~l~~ff~~~ 349 (384)
+...+|++||...
T Consensus 3 sgMKSI~sFF~~k 15 (23)
T 3p87_G 3 SGMKSIDTFFGVK 15 (26)
T ss_pred ccchhHHHHhccc
Confidence 4567899999853
No 89
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=23.99 E-value=33 Score=30.44 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.2
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.|||||++||--++-
T Consensus 143 ~l~GIG~~TA~~ill 157 (228)
T 3s6i_A 143 QIKGIGRWTVEMLLI 157 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 489999999977653
No 90
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=23.71 E-value=62 Score=30.54 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHHHHhCCHHHHHHHHhh
Q 016711 239 IRGIGGQTALKLIRQHGSIETILENINR 266 (384)
Q Consensus 239 i~giG~ktA~~li~~~~sle~il~~~~~ 266 (384)
||||.+-.|..++++|+++-.++++++.
T Consensus 260 i~gVS~ekA~aI~~~YPTp~~L~~Ay~~ 287 (341)
T 2ziu_B 260 LNRVSLEMASAVVNAYPSPQLLVQAYQQ 287 (341)
T ss_dssp STTCCHHHHHHHHHHSCSHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 8999999999999999999999998875
No 91
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=23.64 E-value=88 Score=31.21 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHHHHc
Q 016711 139 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 170 (384)
Q Consensus 139 ~~~~~~lL~~~Gip~i~ap~EADa~~A~L~~~ 170 (384)
+.++.+-|+.+|++.++.-|++.+. ..|++.
T Consensus 97 L~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~ 127 (506)
T 3umv_A 97 LRRLAADAAARHLPFFLFTGGPAEI-PALVQR 127 (506)
T ss_dssp HHHHHHHHHHTTCCEEEESSCTTHH-HHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecChHHH-HHHHHh
Confidence 4445555555666665555555444 555543
No 92
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.44 E-value=1.1e+02 Score=18.53 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 303 PDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 303 pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
|+.+...+-|+ .+||++++...+++.
T Consensus 2 ~~~~~~i~~L~-~mGf~~~~a~~AL~~ 27 (40)
T 1z96_A 2 PGLNSKIAQLV-SMGFDPLEAAQALDA 27 (40)
T ss_dssp -CHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 44444444443 679999888777653
No 93
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=23.28 E-value=33 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCC-----Cccccch--HHHHHHHHHHHcCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~Gi-----p~i~ap~--EADa~~A~L~~~g~~~~v~ 177 (384)
|+..+.+-+.+.|+..|+ .++..|| |-=-.+..|++.+..|+|+
T Consensus 25 I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 75 (157)
T 2obx_A 25 IVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVL 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 445677888888888885 4677898 8777888888888777776
No 94
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=23.11 E-value=35 Score=30.17 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=12.0
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.|||||++||--++-
T Consensus 150 ~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 150 QLPGIGRWTAEMFLL 164 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 489999999876554
No 95
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=23.07 E-value=1.2e+02 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.456 Sum_probs=19.6
Q ss_pred ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016711 297 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 331 (384)
Q Consensus 297 ~~~~~~pd~~~l~~f~~~~~~f~~~~v~~~~~~l~ 331 (384)
.+.|.. |.+.+..|...+-|+. -|+..++.|.
T Consensus 350 ~~~w~~-~~~~~~aW~~G~TG~P--~VDAaMrqL~ 381 (543)
T 2wq7_A 350 QIPWQE-HPDHLEAWTHGRTGYP--FIDAIMRQLR 381 (543)
T ss_dssp CCCCCC-CHHHHHHHHTTCSSCH--HHHHHHHHHH
T ss_pred cCCCcc-CHHHHHHHHcCCCCCH--HHHHHHHHHH
Confidence 456754 6677777776666663 4555555544
No 96
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=22.67 E-value=35 Score=31.41 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.1
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.+|||||+||--++-
T Consensus 215 ~lpGIG~~TA~~ill 229 (290)
T 3i0w_A 215 KFMGVGPQVADCIML 229 (290)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 489999999977653
No 97
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=22.35 E-value=37 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.0
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.|||||++||--++-
T Consensus 154 ~l~GIG~~TA~~ill 168 (232)
T 4b21_A 154 KIKGVKRWTIEMYSI 168 (232)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 489999999876553
No 98
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=21.88 E-value=1.2e+02 Score=23.85 Aligned_cols=66 Identities=8% Similarity=0.036 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHH---HHhcCCCccccchHHHHHHHHHHHcCCeEEEEcCC-CcccccCCCeeEEEeecCCCCCcceEEE
Q 016711 133 KVTKQHNDDCKRL---LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED-MDSLTFGAPRFLRHLMDPSSRKIPVMEF 208 (384)
Q Consensus 133 ~vt~~~~~~~~~l---L~~~Gip~i~ap~EADa~~A~L~~~g~~~~v~S~D-sD~l~fg~~~v~~~l~~~~~~~~~~~~~ 208 (384)
.++........++ ++..|.+ ..-+|+.++..|....+. ++|.| +|+-.+..- .+..+
T Consensus 71 ~~~~~~~~~a~~l~~~~~~~g~~----~~~~D~lIaA~A~~~~~~-lvT~D~kdf~~i~~~--------------~i~~i 131 (149)
T 1v96_A 71 PLLDDIAIKAAQIEANLIKKEIT----LDMEDIITATTAIYTNSL-LVTDDPKRYEPIRRF--------------GLDTM 131 (149)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTCE-EEESCHHHHGGGGGG--------------TCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC----CCHhHHHHHHHHHHcCCE-EEECCHHHHhhhhhC--------------Ceeec
Confidence 4444444333333 4444643 246999999988865554 78999 588554221 13567
Q ss_pred eHHHHHHHh
Q 016711 209 EVAKILEEL 217 (384)
Q Consensus 209 ~~~~v~~~~ 217 (384)
++.++++.+
T Consensus 132 ~~~efl~~~ 140 (149)
T 1v96_A 132 PLDKFIKEV 140 (149)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 777777665
No 99
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.82 E-value=1.1e+02 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 301 SAPDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 301 ~~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
..++.+.|..++ ++||+++.+..+|+.
T Consensus 26 ~~~~ee~I~~L~--eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 26 VAASEEQIQKLV--AMGFDRTQVEVALAA 52 (73)
T ss_dssp SCCCHHHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CcccHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 455666776664 799999999888864
No 100
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=21.71 E-value=88 Score=26.43 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCCC-----ccccch--HHHHHHHHHHH-----cCCeEEEE
Q 016711 134 VTKQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCK-----SGQVYAVA 177 (384)
Q Consensus 134 vt~~~~~~~~~lL~~~Gip-----~i~ap~--EADa~~A~L~~-----~g~~~~v~ 177 (384)
|+..+.+-+.+.|+..|+. ++..|| |-=-.+..|++ .+..|+|+
T Consensus 30 I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavI 85 (168)
T 1ejb_A 30 IIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVI 85 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEE
Confidence 3457788889999999975 567898 87777777877 56666665
No 101
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=21.16 E-value=40 Score=30.83 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=12.0
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.|||||++||--++-
T Consensus 211 ~lpGIG~~TA~~ill 225 (282)
T 1mpg_A 211 TFPGIGRWTANYFAL 225 (282)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 479999999976553
No 102
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=21.09 E-value=1.3e+02 Score=24.09 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHH-hcCCCccccc-hHHHHHHHHHHHcCCeEEEEcCCCcccc--cC
Q 016711 133 KVTKQHNDDCKRLLK-LMGVPVVEAP-SEAEAQCAALCKSGQVYAVASEDMDSLT--FG 187 (384)
Q Consensus 133 ~vt~~~~~~~~~lL~-~~Gip~i~ap-~EADa~~A~L~~~g~~~~v~S~DsD~l~--fg 187 (384)
.++........++.. ..+- .+ .-+|+.++..+....+ .++|.|.|+-. +|
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~----~~l~~~Dali~A~A~~~g~-~l~T~D~dF~~~~~g 130 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYE----KGFSYTDAISEVVAEELKL-KLISYDSRFSLPTIG 130 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTS----TTCCHHHHHHHHHHHHHTC-EEECSCTTCSSCEEC
T ss_pred eCCHHHHHHHHHHHHHHhcc----CCCCHhHHHHHHHHHHcCC-EEEEeCcccCcccCC
Confidence 455566666666665 4431 22 3789999999886555 68999999977 74
No 103
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=21.05 E-value=40 Score=31.08 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.0
Q ss_pred CCCCCcHHHHHHHHH
Q 016711 238 SIRGIGGQTALKLIR 252 (384)
Q Consensus 238 ~i~giG~ktA~~li~ 252 (384)
.||||||+||--++-
T Consensus 214 ~lpGIG~~TA~~ill 228 (295)
T 2jhn_A 214 SFKGIGRWTAELVLS 228 (295)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 479999999877654
No 104
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=20.67 E-value=1.9e+02 Score=22.13 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=35.1
Q ss_pred ccCCHHHHHHHHHH---HHhcCCCccccchHHHHHHHHHHHcCCeEEEEcCC-CcccccCCCee
Q 016711 132 VKVTKQHNDDCKRL---LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED-MDSLTFGAPRF 191 (384)
Q Consensus 132 ~~vt~~~~~~~~~l---L~~~Gip~i~ap~EADa~~A~L~~~g~~~~v~S~D-sD~l~fg~~~v 191 (384)
..++........++ ++..|.+ ..-+|+.+|..|....+. ++|.| +|+-.+.+-.+
T Consensus 71 l~~~~~~~~~a~~l~~~~~~~g~~----~~~~D~lIaA~A~~~~~~-lvT~d~~df~~~~gl~~ 129 (134)
T 3zvk_A 71 IDFSAKCTFYYGELRTELEQKGLI----IGNNDLLIASHAIAENAT-LVTNNIKEFKRIPNLIL 129 (134)
T ss_dssp ECBCHHHHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTCE-EEESSTTTSCSCTTCEE
T ss_pred ecCCHHHHHHHHHHHHHHHHcCCC----CCccHHHHHHHHHHCCCE-EEECCHHHhcCCCCCee
Confidence 34555544443333 4445654 246899999998864444 78999 99988865544
No 105
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.59 E-value=67 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016711 302 APDEEGLINFLVSENGFNSDRVTKAIEK 329 (384)
Q Consensus 302 ~pd~~~l~~f~~~~~~f~~~~v~~~~~~ 329 (384)
.+|.+.|..++ ++||+++++..+|..
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (64)
T 1whc_A 7 GAELTALESLI--EMGFPRGRAEKALAL 32 (64)
T ss_dssp CCCCCHHHHHH--TTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 46777777776 699999888887763
No 106
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=20.33 E-value=64 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHhC
Q 016711 239 IRGIGGQTALKLIRQHG 255 (384)
Q Consensus 239 i~giG~ktA~~li~~~~ 255 (384)
|.|||..+|..++++.+
T Consensus 35 I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 35 IKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHcC
Confidence 68999999999998865
Done!