BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>016712
MMSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTR
EFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGIS
KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA
PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA
LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN
PLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSL
CMGISHKARGRGPFQLSEMDVSIY
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with PMH2 PMH2 PMH2 putative mitochondrial RNA helicase 2	protein from Arabidopsis thaliana	4.4e-107
BLAST match view associations BLAST with PMH1 PMH1 PMH1 putative mitochondrial RNA helicase 1	protein from Arabidopsis thaliana	1.0e-100
BLAST match view associations BLAST with emb1138 emb1138 emb1138 AT5G26742	protein from Arabidopsis thaliana	1.1e-71
BLAST match view associations BLAST with PRH75 PRH75 PRH75	protein from Arabidopsis thaliana	3.3e-47
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Gallus gallus	3.1e-46
BLAST match view associations BLAST with ddx21 ddx21 ddx21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	gene_product from Danio rerio	1.2e-45
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Canis lupus familiaris	5.7e-45
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-44
BLAST match view associations BLAST with Ddx21 Ddx21 Ddx21 DEAD (Asp-Glu-Ala-Asp) box helicase 21	gene from Rattus norvegicus	1.4e-44
BLAST match view associations BLAST with Ddx50 Ddx50 Ddx50 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein from Mus musculus	1.5e-44
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Bos taurus	1.6e-44
BLAST match view associations BLAST with Ddx21 Ddx21 Ddx21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein from Mus musculus	1.6e-44
BLAST match view associations BLAST with DDX21 DDX21 DDX21 Nucleolar RNA helicase 2	protein from Homo sapiens	1.8e-44
BLAST match view associations BLAST with DDX50 DDX50 DDX50 Uncharacterized protein	protein from Sus scrofa	2.1e-44
BLAST match view associations BLAST with DDX50 DDX50 DDX50 ATP-dependent RNA helicase DDX50	protein from Homo sapiens	2.7e-44
BLAST match view associations BLAST with DDX21 DDX21 DDX21 DDX21 protein	protein from Bos taurus	5.1e-44
BLAST match view associations BLAST with DDX21 DDX21 DDX21 Uncharacterized protein	protein from Sus scrofa	5.9e-44
BLAST match view associations BLAST with PFE0215w PFE0215w PFE0215w ATP-dependent helicase, putative	gene from Plasmodium falciparum	3.7e-43
BLAST match view associations BLAST with PFE0215w PFE0215w PFE0215w ATP-dependent helicase, putative	protein from Plasmodium falciparum 3D7	3.7e-43
BLAST match view associations BLAST with DDX21 DDX21 DDX21 Uncharacterized protein	protein from Canis lupus familiaris	8.2e-43
BLAST match view associations BLAST with DDX21 DDX21 DDX21 Uncharacterized protein	protein from Canis lupus familiaris	8.3e-43
BLAST match view associations BLAST with VC_A0804 VC_A0804 VC_A0804 ATP-dependent RNA helicase DeaD	protein from Vibrio cholerae O1 biovar El Tor str. N16961	4.1e-42
BLAST match view associations BLAST with VC_A0804 VC_A0804 VC_A0804 ATP-dependent RNA helicase DeaD	protein from Vibrio cholerae O1 biovar El Tor	4.1e-42
BLAST match view associations BLAST with SO_4034 SO_4034 SO_4034 ATP-dependent RNA helicase DeaD	protein from Shewanella oneidensis MR-1	6.6e-42
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Geobacillus kaustophilus HTA426	1.2e-40
BLAST match view associations BLAST with STRS1 STRS1 STRS1 STRESS RESPONSE SUPPRESSOR 1	protein from Arabidopsis thaliana	2.0e-40
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Escherichia coli K-12	2.6e-40
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis str. Al Hakam	2.1e-38
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus E33L	2.1e-38
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus thuringiensis serovar konkukian str. 97-27	2.1e-38
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 10987	2.1e-38
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus cereus ATCC 14579	2.1e-38
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus anthracis	2.1e-38
BLAST match view associations BLAST with BA_0247 BA_0247 BA_0247 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	2.1e-38
BLAST match view associations BLAST with CPS_1726 CPS_1726 CPS_1726 RNA helicase DeaD	protein from Colwellia psychrerythraea 34H	2.5e-38
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase RhlE	protein from Hyphomonas neptunium ATCC 15444	2.6e-38
BLAST match view associations BLAST with deaD deaD deaD Cold-shock DEAD box protein A	protein from Pseudomonas protegens Pf-5	3.4e-38
BLAST match view associations BLAST with RH20 RH20 RH20 RNA helicase 20	protein from Arabidopsis thaliana	4.3e-38
BLAST match view associations BLAST with deaD deaD deaD Cold-shock DEAD box protein A homolog	protein from Mycobacterium tuberculosis	5.5e-38
BLAST match view associations BLAST with PSPPH_0449 PSPPH_0449 PSPPH_0449 ATP-dependent RNA helicase RhlE, putative	protein from Pseudomonas syringae pv. phaseolicola 1448A	7.1e-38
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase DEAD box family	protein from Shewanella oneidensis MR-1	1.5e-37
BLAST match view associations BLAST with SO_3125 SO_3125 SO_3125 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	1.5e-37
BLAST match view associations BLAST with DDB_G0281925 DDB_G0281925 DDB_G0281925 DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.3e-37
BLAST match view associations BLAST with CPS_1418 CPS_1418 CPS_1418 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	3.0e-37
BLAST match view associations BLAST with rhlE_2 rhlE_2 rhlE_2 Putative ATP-dependent RNA helicase	protein from Pseudomonas protegens Pf-5	3.3e-37
BLAST match view associations BLAST with RVBD_3211 RVBD_3211 RVBD_3211 ATP-dependent RNA helicase rhlE	protein from Mycobacterium tuberculosis H37Rv	3.9e-37
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus licheniformis DSM 13 = ATCC 14580	3.9e-37
BLAST match view associations BLAST with CPS_3401 CPS_3401 CPS_3401 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	3.9e-37
BLAST match view associations BLAST with cshA cshA cshA DEAD-box ATP-dependent RNA helicase CshA	protein from Bacillus subtilis subsp. subtilis str. 168	8.0e-37
BLAST match view associations BLAST with AT5G63120 AT5G63120 AT5G63120	protein from Arabidopsis thaliana	1.3e-36
BLAST match view associations BLAST with BAS2301 BAS2301 BAS2301 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis	1.7e-36
BLAST match view associations BLAST with BA_2475 BA_2475 BA_2475 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Bacillus anthracis str. Ames	1.7e-36
BLAST match view associations BLAST with deaD deaD deaD DeaD, DEAD-box RNA helicase	protein from Escherichia coli K-12	2.2e-36
BLAST match view associations BLAST with SPO_1443 SPO_1443 SPO_1443 ATP-dependent RNA helicase RhlE	protein from Ruegeria pomeroyi DSS-3	9.2e-36
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Gallus gallus	1.2e-35
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	1.2e-35
BLAST match view associations BLAST with dbpA dbpA dbpA ATP-dependent RNA helicase DbpA	protein from Colwellia psychrerythraea 34H	1.2e-35
BLAST match view associations BLAST with CHY_0229 CHY_0229 CHY_0229 ATP-dependent RNA helicase, DEAD box family	protein from Carboxydothermus hydrogenoformans Z-2901	1.2e-35
BLAST match view associations BLAST with CPS_1125 CPS_1125 CPS_1125 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.2e-35
BLAST match view associations BLAST with CPS_1540 CPS_1540 CPS_1540 ATP-dependent RNA helicase DbpA	protein from Colwellia psychrerythraea 34H	1.2e-35
BLAST match view associations BLAST with DET_0183 DET_0183 DET_0183 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Dehalococcoides ethenogenes 195	1.3e-35
BLAST match view associations BLAST with CG7878 CG7878 CG7878	protein from Drosophila melanogaster	2.3e-35
BLAST match view associations BLAST with rhlE rhlE rhlE ATP-dependent RNA helicase	protein from Coxiella burnetii RSA 493	2.4e-35
BLAST match view associations BLAST with CBU_0670 CBU_0670 CBU_0670 ATP-dependent RNA helicase RhlE, putative	protein from Coxiella burnetii RSA 493	2.4e-35
BLAST match view associations BLAST with GSU_0914 GSU_0914 GSU_0914 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	2.4e-35
BLAST match view associations BLAST with SO_3783 SO_3783 SO_3783 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	2.4e-35
BLAST match view associations BLAST with dbpA dbpA dbpA ATP-dependent RNA helicase DbpA	protein from Shewanella oneidensis MR-1	3.1e-35
BLAST match view associations BLAST with SO_0897 SO_0897 SO_0897 ATP-dependent RNA helicase DbpA	protein from Shewanella oneidensis MR-1	3.1e-35
BLAST match view associations BLAST with inf-1 inf-1 inf-1	gene from Caenorhabditis elegans	4.0e-35
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Gallus gallus	4.1e-35
BLAST match view associations BLAST with GSU_0522 GSU_0522 GSU_0522 ATP-dependent RNA helicase RhlB	protein from Geobacter sulfurreducens PCA	6.5e-35
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 helicase, truncated, putative	gene from Plasmodium falciparum	1.1e-34
BLAST match view associations BLAST with PF14_0437 PF14_0437 PF14_0437 Helicase, putative	protein from Plasmodium falciparum 3D7	1.1e-34
BLAST match view associations BLAST with SPO_3833 SPO_3833 SPO_3833 ATP-dependent RNA helicase, DEAD/DEAH box family	protein from Ruegeria pomeroyi DSS-3	1.1e-34
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Probable ATP-dependent RNA helicase DDX46	protein from Homo sapiens	1.1e-34
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Bos taurus	1.1e-34
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-34
BLAST match view associations BLAST with DDX46 DDX46 DDX46 Uncharacterized protein	protein from Sus scrofa	1.1e-34
BLAST match view associations BLAST with Ddx46 Ddx46 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein from Mus musculus	1.1e-34
BLAST match view associations BLAST with Ddx46 Ddx46 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	gene from Rattus norvegicus	1.1e-34
BLAST match view associations BLAST with TIF1 TIF1 TIF1 ATP-dependent RNA helicase eIF4A	protein from Magnaporthe oryzae 70-15	1.7e-34
BLAST match view associations BLAST with CPS_2658 CPS_2658 CPS_2658 ATP-dependent RNA helicase, DEAD box family	protein from Colwellia psychrerythraea 34H	1.7e-34
BLAST match view associations BLAST with GSU_0491 GSU_0491 GSU_0491 ATP-dependent RNA helicase RhlE	protein from Geobacter sulfurreducens PCA	1.7e-34
BLAST match view associations BLAST with ddx46 ddx46 ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	gene_product from Danio rerio	1.8e-34
BLAST match view associations BLAST with DHH1 DHH1 DHH1 ATP-dependent RNA helicase DHH1	protein from Magnaporthe oryzae 70-15	2.2e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 DDX17 protein	protein from Bos taurus	2.7e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	2.7e-34
BLAST match view associations BLAST with Ddx17 Ddx17 Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein from Mus musculus	2.7e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	2.7e-34
BLAST match view associations BLAST with PRP5 PRP5 PRP5	gene_product from Candida albicans	2.7e-34
BLAST match view associations BLAST with PRP5 PRP5 PRP5 Pre-mRNA-processing ATP-dependent RNA helicase PRP5	protein from Candida albicans SC5314	2.7e-34
BLAST match view associations BLAST with DDX43 DDX43 DDX43 Uncharacterized protein	protein from Gallus gallus	2.8e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	4.2e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Probable ATP-dependent RNA helicase DDX17	protein from Homo sapiens	4.2e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Canis lupus familiaris	4.3e-34
BLAST match view associations BLAST with DDX17 DDX17 DDX17 Uncharacterized protein	protein from Sus scrofa	4.3e-34
BLAST match view associations BLAST with SO_1383 SO_1383 SO_1383 ATP-dependent RNA helicase, DEAD box family	protein from Shewanella oneidensis MR-1	4.6e-34
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016712
        (384 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ...  1059  4.4e-107  1
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ...   999  1.0e-100  1
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1...   725  1.1e-71   1
TAIR|locus:2167903 - symbol:PRH75 species:3702 "Arabidops...   494  3.3e-47   1
UNIPROTKB|E1BW15 - symbol:DDX50 "Uncharacterized protein"...   485  3.1e-46   1
ZFIN|ZDB-GENE-031113-10 - symbol:ddx21 "DEAD (Asp-Glu-Ala...   484  1.2e-45   1
UNIPROTKB|F1LX16 - symbol:F1LX16 "Uncharacterized protein...   475  3.4e-45   1
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"...   474  5.7e-45   1
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"...   474  1.2e-44   1
RGD|1307306 - symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box he...   475  1.4e-44   1
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo...   473  1.5e-44   1
UNIPROTKB|F1MMK3 - symbol:DDX50 "Uncharacterized protein"...   473  1.6e-44   1
MGI|MGI:1860494 - symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) bo...   476  1.6e-44   1
UNIPROTKB|Q9NR30 - symbol:DDX21 "Nucleolar RNA helicase 2...   474  1.8e-44   1
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"...   472  2.1e-44   1
UNIPROTKB|Q9BQ39 - symbol:DDX50 "ATP-dependent RNA helica...   471  2.7e-44   1
UNIPROTKB|A4FV23 - symbol:DDX21 "DDX21 protein" species:9...   470  5.1e-44   1
UNIPROTKB|F1SUG7 - symbol:DDX21 "Uncharacterized protein"...   471  5.9e-44   1
GENEDB_PFALCIPARUM|PFE0215w - symbol:PFE0215w "ATP-depend...   348  3.7e-43   2
UNIPROTKB|Q8I457 - symbol:PFE0215w "ATP-dependent helicas...   348  3.7e-43   2
UNIPROTKB|E2QTL6 - symbol:DDX21 "Uncharacterized protein"...   459  8.2e-43   1
UNIPROTKB|F6V8G4 - symbol:DDX21 "Uncharacterized protein"...   459  8.3e-43   1
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel...   448  4.1e-42   1
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he...   448  4.1e-42   1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli...   444  6.6e-42   1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN...   432  1.2e-40   1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE...   430  2.0e-40   1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas...   429  2.6e-40   1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN...   411  2.1e-38   1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN...   411  2.1e-38   1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN...   411  2.1e-38   1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN...   411  2.1e-38   1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN...   411  2.1e-38   1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN...   411  2.1e-38   1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli...   411  2.1e-38   1
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s...   412  2.5e-38   1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas...   410  2.6e-38   1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote...   409  3.4e-38   1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie...   408  4.3e-38   1
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote...   407  5.5e-38   1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h...   409  7.1e-38   1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli...   403  1.5e-37   1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli...   403  1.5e-37   1
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b...   402  2.3e-37   1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he...   400  3.0e-37   1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ...   403  3.3e-37   1
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN...   399  3.9e-37   1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN...   399  3.9e-37   1
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he...   399  3.9e-37   1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN...   396  8.0e-37   1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi...   396  1.3e-36   1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli...   393  1.7e-36   1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli...   393  1.7e-36   1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica...   396  2.2e-36   1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he...   386  9.2e-36   1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"...   385  1.2e-35   1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel...   385  1.2e-35   1
UNIPROTKB|Q485I3 - symbol:dbpA "ATP-dependent RNA helicas...   385  1.2e-35   1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he...   385  1.2e-35   1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he...   385  1.2e-35   1
TIGR_CMR|CPS_1540 - symbol:CPS_1540 "ATP-dependent RNA he...   385  1.2e-35   1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he...   385  1.3e-35   1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m...   389  2.3e-35   1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas...   382  2.4e-35   1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he...   382  2.4e-35   1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he...   382  2.4e-35   1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli...   382  2.4e-35   1
UNIPROTKB|Q8EIE5 - symbol:dbpA "ATP-dependent RNA helicas...   381  3.1e-35   1
TIGR_CMR|SO_0897 - symbol:SO_0897 "ATP-dependent RNA heli...   381  3.1e-35   1
WB|WBGene00002083 - symbol:inf-1 species:6239 "Caenorhabd...   380  4.0e-35   1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"...   391  4.1e-35   1
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer...   379  5.1e-35   1
TIGR_CMR|GSU_0522 - symbol:GSU_0522 "ATP-dependent RNA he...   378  6.5e-35   1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase...   376  1.1e-34   1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ...   376  1.1e-34   1
TIGR_CMR|SPO_3833 - symbol:SPO_3833 "ATP-dependent RNA he...   383  1.1e-34   1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R...   387  1.1e-34   1
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"...   387  1.1e-34   1
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"...   387  1.1e-34   1
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"...   387  1.1e-34   1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo...   387  1.1e-34   1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol...   387  1.1e-34   1
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R...   387  1.1e-34   1
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas...   374  1.7e-34   1
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he...   374  1.7e-34   1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he...   374  1.7e-34   1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al...   385  1.8e-34   1
UNIPROTKB|A4R715 - symbol:DHH1 "ATP-dependent RNA helicas...   373  2.2e-34   1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"...   378  2.7e-34   1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"...   378  2.7e-34   1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo...   378  2.7e-34   1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R...   378  2.7e-34   1
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica...   368  2.7e-34   2
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d...   368  2.7e-34   2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"...   372  2.8e-34   1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R...   378  4.2e-34   1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R...   378  4.2e-34   1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"...   378  4.3e-34   1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"...   378  4.3e-34   1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli...   370  4.6e-34   1

WARNING:  Descriptions of 738 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 226/331 (68%), Positives = 259/331 (78%)

Query:     2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAK---SGPVIPRHDDIIKSRFSAG 58
             M + +L+RS     SKR L+A+LTS+ T+L  +LA A    S   +    D+ K+ F  G
Sbjct:     1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLAPAATRVSDLALIGSSDV-KAGFPFG 58

Query:    59 T--REFHAISRPLDFKSSIAWQHAQSAVDDY----VAYDDSSKDEGLDISKLDISQDIVA 112
                +  H  S PLDF++S+  Q A  A+ +     V   +S   +GL IS+L IS +IV 
Sbjct:    59 VEAKGIHFQSGPLDFRASMVSQ-AGFAISESSERRVGDSESVGGDGLAISELGISPEIVK 117

Query:   113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
             AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGR
Sbjct:   118 ALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGR 177

Query:   173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
             NPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI  QMR LDYGVD  VGTPGRV
Sbjct:   178 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV 237

Query:   233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
             IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRS
Sbjct:   238 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRS 297

Query:   293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
             LT KYL NPLTVDLVGDSDQKLADGI+ YSI
Sbjct:   298 LTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328


>TAIR|locus:2087832 [details] [associations]
            symbol:PMH1 "putative mitochondrial RNA helicase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
            GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
            EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
            UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
            STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
            GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
            InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
            Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
        Length = 610

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 203/284 (71%), Positives = 228/284 (80%)

Query:    53 SRFSAGTREFHAISRPLDFKSSI-------AWQHAQS-----AVDDYVAYDDSSKDEGLD 100
             S F    R+FH  S P +F+SSI       A ++A S      + D  +   S   +GL 
Sbjct:    58 SPFGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLA 117

Query:   101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
             I+ L IS +IV AL  RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DK
Sbjct:   118 IADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 177

Query:   161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
             IIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI  QMR L+Y
Sbjct:   178 IIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNY 237

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G+D  VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP  RQSM
Sbjct:   238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
             MFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct:   298 MFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 341


>TAIR|locus:504955106 [details] [associations]
            symbol:emb1138 "embryo defective 1138" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
            "zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR001650
            InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
            GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
            EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
            EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
            EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
            IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
            RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
            SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
            EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
            GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
            PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
            Uniprot:Q8L7S8
        Length = 748

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 155/278 (55%), Positives = 196/278 (70%)

Query:    64 AISRPLDFKSSIAWQH-AQSAVDDYVAYDDSSK---DEG--LDISKLDISQDIVAALARR 117
             A++ P    S  A++    S  D+Y    D++    D+G  L ISKL + Q +  +L +R
Sbjct:    61 AVATPNSVLSEEAFKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKR 120

Query:   118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRN 173
             GI+ LFPIQ+AVL PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ +    +      GR 
Sbjct:   121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180

Query:   174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
             P  LVLAPTRELAKQVEKE  ESAP L T+CVYGG   + Q  AL  GVD VVGTPGR+I
Sbjct:   181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRII 240

Query:   234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
             DLI+  +L L EV+++VLDEADQML+VGF E VE ILE LP  RQSM+FSATMP W++ L
Sbjct:   241 DLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKL 300

Query:   294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
               KYL NPL +DLVGD D+KLA+GI LY+IAT+   ++
Sbjct:   301 ARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKR 338


>TAIR|locus:2167903 [details] [associations]
            symbol:PRH75 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
            maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
            GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
            EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
            ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
            PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
            KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
            OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
            Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
        Length = 671

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 110/258 (42%), Positives = 159/258 (61%)

Query:    70 DFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAV 129
             + KS  + +  +S+    +  +D   D    +SK  IS  +   L   GI  LFPIQ + 
Sbjct:    67 EVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQAST 126

Query:   130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTREL 185
              +  + G D++GRARTG GKTLAF +PIL+ ++    K   K G GR+P  LVL PTREL
Sbjct:   127 FDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTREL 186

Query:   186 AKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243
             AKQV  +F     SL   + C+YGG     Q   L  GVD VVGTPGR+ D I+R  L+ 
Sbjct:   187 AKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDF 246

Query:   244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-N 300
             S +QF VLDEAD+ML +GF EDVE+IL ++  +   Q+++FSAT+P W+++++N++LK +
Sbjct:   247 SYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRD 306

Query:   301 PLTVDLVGDSDQKLADGI 318
               T+DLVG+   K ++ +
Sbjct:   307 QKTIDLVGNDKMKASNSV 324


>UNIPROTKB|E1BW15 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
            "double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
            EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
            Uniprot:E1BW15
        Length = 693

 Score = 485 (175.8 bits), Expect = 3.1e-46, P = 3.1e-46
 Identities = 102/233 (43%), Positives = 145/233 (62%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS+  +  L  RG++ LFP+Q     P   G+D+I +ARTGTGKT +F IP
Sbjct:   112 EGA-FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIP 170

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++K+   +++  RGR+P  LVLAPTRELA QV K+F +    L   C YGGTP + Q+ 
Sbjct:   171 LIEKLQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQID 230

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
              +  G+D +VGTPGR+ D ++   L+L++V+ VVLDE DQML +GFAE VE IL     +
Sbjct:   231 LIRSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDL+G   QK A  +   +I
Sbjct:   291 DSEDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAI 343


>ZFIN|ZDB-GENE-031113-10 [details] [associations]
            symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
            ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
            OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
            RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
            STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
            Uniprot:B1H1J4
        Length = 759

 Score = 484 (175.4 bits), Expect = 1.2e-45, P = 1.2e-45
 Identities = 103/234 (44%), Positives = 145/234 (61%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS + +  L  RG+S LF IQ         G+D+IG+ARTGTGKT +F +P
Sbjct:   165 EGA-FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVP 223

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++K+   +++  RGR P  LVLAPTRELA QV K+F +    L   C YGG+  + Q+ 
Sbjct:   224 LVEKLQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRKLSVTCFYGGSSYNPQID 283

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER---- 272
             A+  G+D +VGTPGR+ D ++ N L+LS++Q VVLDE DQML +GFAE VE IL      
Sbjct:   284 AIRSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKK 343

Query:   273 -LPQNRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIA 324
                Q  Q+++FSAT P W+  +  KY+++  + VDL+G   QK A  +   +IA
Sbjct:   344 DAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIA 397


>UNIPROTKB|F1LX16 [details] [associations]
            symbol:F1LX16 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
            Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
        Length = 659

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 105/259 (40%), Positives = 151/259 (58%)

Query:    63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
             + +S P    SS      +S  +  +  +     EG   S   IS++ V  L  RG++ L
Sbjct:    34 NGLSHPKPDSSSTQAPGEESETEKEIPVEQK---EGA-FSNFPISEETVKLLKARGVNFL 89

Query:   123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
             FPIQ         G+D+I +ARTGTGKT +F IP+++K+    ++  RGR P  LVLAPT
Sbjct:    90 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPT 149

Query:   183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
             RELA QV K+F +    L   C YGGTP   Q+  +  G+D +VGTPGR+ D ++   L+
Sbjct:   150 RELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD 209

Query:   243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
             L++++ VVLDE DQML +GFA+ VE IL     +    N Q+++FSAT P W+ ++  KY
Sbjct:   210 LTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 269

Query:   298 LKNPLT-VDLVGDSDQKLA 315
             +K+    VDL+G   QK A
Sbjct:   270 MKSTYKQVDLIGKKTQKAA 288


>UNIPROTKB|E2RPT4 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
        Length = 687

 Score = 474 (171.9 bits), Expect = 5.7e-45, P = 5.7e-45
 Identities = 101/233 (43%), Positives = 142/233 (60%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG+S LFPIQ     P  +G+D+I +ARTGTGKT +F IP
Sbjct:   138 EGA-FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 196

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++++ +  E   + R+P  LVLAPTRELA QV K+F +    L   C YGGT    Q+ 
Sbjct:   197 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 256

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
              +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+      
Sbjct:   257 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 316

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I
Sbjct:   317 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 369


>UNIPROTKB|E2QTT0 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
            Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
        Length = 738

 Score = 474 (171.9 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 101/233 (43%), Positives = 142/233 (60%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG+S LFPIQ     P  +G+D+I +ARTGTGKT +F IP
Sbjct:   137 EGA-FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 195

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++++ +  E   + R+P  LVLAPTRELA QV K+F +    L   C YGGT    Q+ 
Sbjct:   196 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 255

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
              +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+      
Sbjct:   256 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 315

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I
Sbjct:   316 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368


>RGD|1307306 [details] [associations]
            symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
            to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
            RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
            STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
            Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
            UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
            Uniprot:Q3B8Q1
        Length = 782

 Score = 475 (172.3 bits), Expect = 1.4e-44, P = 1.4e-44
 Identities = 105/259 (40%), Positives = 151/259 (58%)

Query:    63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
             + +S P    SS      +S  +  +  +     EG   S   IS++ V  L  RG++ L
Sbjct:   150 NGLSHPKPDSSSTQAPGEESETEKEIPVEQK---EGA-FSNFPISEETVKLLKARGVNFL 205

Query:   123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
             FPIQ         G+D+I +ARTGTGKT +F IP+++K+    ++  RGR P  LVLAPT
Sbjct:   206 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPT 265

Query:   183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
             RELA QV K+F +    L   C YGGTP   Q+  +  G+D +VGTPGR+ D ++   L+
Sbjct:   266 RELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD 325

Query:   243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
             L++++ VVLDE DQML +GFA+ VE IL     +    N Q+++FSAT P W+ ++  KY
Sbjct:   326 LTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 385

Query:   298 LKNPLT-VDLVGDSDQKLA 315
             +K+    VDL+G   QK A
Sbjct:   386 MKSTYEQVDLIGKKTQKAA 404


>MGI|MGI:2182303 [details] [associations]
            symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
            UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
            PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
            Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
            UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
            CleanEx:MM_DDX50 Genevestigator:Q99MJ9
            GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
        Length = 734

 Score = 473 (171.6 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 100/233 (42%), Positives = 142/233 (60%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ     P  +G+D+I +ARTGTGKT +F IP
Sbjct:   133 EGA-FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 191

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++++ +  E   + R+P  LVLAPTRELA QV K+F +    L   C YGGT    Q+ 
Sbjct:   192 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 251

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
              +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+      
Sbjct:   252 QIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 311

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I
Sbjct:   312 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364


>UNIPROTKB|F1MMK3 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
            UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
            GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
            Uniprot:F1MMK3
        Length = 737

 Score = 473 (171.6 bits), Expect = 1.6e-44, P = 1.6e-44
 Identities = 101/233 (43%), Positives = 142/233 (60%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ     P  +G+D+I +ARTGTGKT +F IP
Sbjct:   136 EGA-FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 194

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++++ +  E   + R+P  LVLAPTRELA QV K+F +    L   C YGGT    Q+ 
Sbjct:   195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLSVACFYGGTSYQSQIN 254

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
              +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE IL      
Sbjct:   255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKT 314

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I
Sbjct:   315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367


>MGI|MGI:1860494 [details] [associations]
            symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
            evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
            "response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
            GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
            EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
            RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
            SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
            PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
            Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
            InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
            Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
        Length = 851

 Score = 476 (172.6 bits), Expect = 1.6e-44, P = 1.6e-44
 Identities = 104/257 (40%), Positives = 153/257 (59%)

Query:    65 ISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFP 124
             +S+P + KS+ +    + +  +        + EG   S   IS++ V  L  RG++ LFP
Sbjct:   225 LSQPSEPKSNSSDAPGEESSSETEKEIPVEQKEGA-FSNFPISEETVKLLKARGVNFLFP 283

Query:   125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
             IQ         G+D+I +ARTGTGKT +F IP+++K+    ++  RGR P  LVLAPTRE
Sbjct:   284 IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRE 343

Query:   185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLS 244
             LA QV K+F +    L   C YGGTP   Q+  +  G+D +VGTPGR+ D ++   L+L+
Sbjct:   344 LANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLT 403

Query:   245 EVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
             +++ VVLDE DQML +GFA+ VE IL     +    N Q+++FSAT P W+ ++  KY+K
Sbjct:   404 KLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMK 463

Query:   300 NPLT-VDLVGDSDQKLA 315
             +    VDL+G   QK A
Sbjct:   464 STYEQVDLIGKKTQKAA 480


>UNIPROTKB|Q9NR30 [details] [associations]
            symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
            sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
            "double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
            to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
            EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
            EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
            EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
            EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
            IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
            UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
            IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
            DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
            PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
            KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
            H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
            neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
            PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
            ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
            Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
        Length = 783

 Score = 474 (171.9 bits), Expect = 1.8e-44, P = 1.8e-44
 Identities = 103/249 (41%), Positives = 147/249 (59%)

Query:    73 SSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
             S  A + + S ++  +  +     EG   S   IS++ +  L  RG++ LFPIQ      
Sbjct:   164 SEAASEESNSEIEQEIPVEQK---EGA-FSNFPISEETIKLLKGRGVTFLFPIQAKTFHH 219

Query:   133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192
                G+D+I +ARTGTGKT +F IP+++K+    +   RGR P  LVLAPTRELA QV K+
Sbjct:   220 VYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKD 279

Query:   193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
             F +    L   C YGGTP   Q   +  G+D +VGTPGR+ D I+   L+L++++ VVLD
Sbjct:   280 FSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLD 339

Query:   253 EADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDL 306
             E DQML +GFA+ VE IL     +    N Q+++FSAT P W+ ++  KY+K+    VDL
Sbjct:   340 EVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL 399

Query:   307 VGDSDQKLA 315
             +G   QK A
Sbjct:   400 IGKKTQKTA 408


>UNIPROTKB|F1SUG8 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
            EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
        Length = 737

 Score = 472 (171.2 bits), Expect = 2.1e-44, P = 2.1e-44
 Identities = 100/233 (42%), Positives = 142/233 (60%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ     P  +G+D+I +ARTGTGKT +F IP
Sbjct:   136 EGA-FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 194

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++++ +  E   + R+P  LVLAPTRELA QV K+F +    L   C YGGT    Q+ 
Sbjct:   195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQIN 254

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
              +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+      
Sbjct:   255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 314

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I
Sbjct:   315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367


>UNIPROTKB|Q9BQ39 [details] [associations]
            symbol:DDX50 "ATP-dependent RNA helicase DDX50"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
            EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
            UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
            SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
            DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
            PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
            KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
            HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
            PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
            PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
            GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
            CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
        Length = 737

 Score = 471 (170.9 bits), Expect = 2.7e-44, P = 2.7e-44
 Identities = 100/233 (42%), Positives = 142/233 (60%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ     P  +G+D+I +ARTGTGKT +F IP
Sbjct:   136 EGA-FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 194

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++++ +  E   + R+P  LVLAPTRELA QV K+F +    L   C YGGT    Q+ 
Sbjct:   195 LIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQIN 254

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273
              +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+      
Sbjct:   255 HIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKT 314

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
                 N Q+++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I
Sbjct:   315 DSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367


>UNIPROTKB|A4FV23 [details] [associations]
            symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
            EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
            UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
            KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
        Length = 784

 Score = 470 (170.5 bits), Expect = 5.1e-44, P = 5.1e-44
 Identities = 98/225 (43%), Positives = 140/225 (62%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ         G+D+I +ARTGTGKT +F IP
Sbjct:   186 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 244

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++K++   +   RGR P  LVLAPTRELA QV ++F +    L   C YGGTP   Q+ 
Sbjct:   245 LVEKLLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIE 304

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
              +  G+D +VGTPGR+ D ++   L+L++++ VVLDE DQML +GFA+ VE IL     +
Sbjct:   305 RMKNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKK 364

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
                 N Q+++FSAT P W+ ++  KY+K+    VDL+G   QK A
Sbjct:   365 DSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTA 409


>UNIPROTKB|F1SUG7 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
            [GO:0009615 "response to virus" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
            Uniprot:F1SUG7
        Length = 855

 Score = 471 (170.9 bits), Expect = 5.9e-44, P = 5.9e-44
 Identities = 99/225 (44%), Positives = 140/225 (62%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ         G+D+I +ARTGTGKT +F IP
Sbjct:   257 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 315

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             +++K+    +   RGR P  LVLAPTRELA QV ++F +    L   C YGGTP   Q+ 
Sbjct:   316 LIEKLQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQID 375

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
              +  G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL     +
Sbjct:   376 RMRNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKK 435

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
                 N Q+++FSAT P W+ ++  KY+K+    VDL+G   QK A
Sbjct:   436 DSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 480


>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
            symbol:PFE0215w "ATP-dependent helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0020011
            "apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
            ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
            GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
            HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
        Length = 755

 Score = 348 (127.6 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
 Identities = 74/175 (42%), Positives = 113/175 (64%)

Query:   165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
             N +H +  +P  LVL PTREL+KQVE  F E +   + + + +YGG   ++Q   L  G+
Sbjct:   251 NREHNK--DPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGI 308

Query:   223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMM 281
             D + GTPGR+ID I++  L+L  +++VVLDEAD+ML++GF  D+E IL  +  +  Q ++
Sbjct:   309 DILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLL 368

Query:   282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             +SAT P WI+ +++KYLKNP  +D+V DS  K A  I   +I T  +++  E AL
Sbjct:   369 YSATTPSWIKDISSKYLKNPFCIDVV-DSSNKTAKNIKHIAIKTPYDIK--EKAL 420

 Score = 142 (55.0 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
 Identities = 34/88 (38%), Positives = 57/88 (64%)

Query:    85 DDYVAY-DDSSKDEGLDISKLDISQDIVAALA-RRGISKLFPIQKAVLEPAMQGRDMIGR 142
             DD  ++ +D  K +  D+S  +I+++IV  L  ++GI  +  IQ    +P  +G+D+IGR
Sbjct:   129 DDSESHLNDQGKCKFSDLS--EINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGR 186

Query:   143 ARTGTGKTLAFGIPILDKIIKF---NEK 167
             + TG+GKTLAF +P+++K+ K    NEK
Sbjct:   187 SETGSGKTLAFALPLVEKLYKMKTSNEK 214


>UNIPROTKB|Q8I457 [details] [associations]
            symbol:PFE0215w "ATP-dependent helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
            ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
            GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
            HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
        Length = 755

 Score = 348 (127.6 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
 Identities = 74/175 (42%), Positives = 113/175 (64%)

Query:   165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
             N +H +  +P  LVL PTREL+KQVE  F E +   + + + +YGG   ++Q   L  G+
Sbjct:   251 NREHNK--DPSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGI 308

Query:   223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMM 281
             D + GTPGR+ID I++  L+L  +++VVLDEAD+ML++GF  D+E IL  +  +  Q ++
Sbjct:   309 DILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLL 368

Query:   282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             +SAT P WI+ +++KYLKNP  +D+V DS  K A  I   +I T  +++  E AL
Sbjct:   369 YSATTPSWIKDISSKYLKNPFCIDVV-DSSNKTAKNIKHIAIKTPYDIK--EKAL 420

 Score = 142 (55.0 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
 Identities = 34/88 (38%), Positives = 57/88 (64%)

Query:    85 DDYVAY-DDSSKDEGLDISKLDISQDIVAALA-RRGISKLFPIQKAVLEPAMQGRDMIGR 142
             DD  ++ +D  K +  D+S  +I+++IV  L  ++GI  +  IQ    +P  +G+D+IGR
Sbjct:   129 DDSESHLNDQGKCKFSDLS--EINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGR 186

Query:   143 ARTGTGKTLAFGIPILDKIIKF---NEK 167
             + TG+GKTLAF +P+++K+ K    NEK
Sbjct:   187 SETGSGKTLAFALPLVEKLYKMKTSNEK 214


>UNIPROTKB|E2QTL6 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
            RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
            GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
            CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
            Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
            NextBio:20852481 Uniprot:E2QTL6
        Length = 785

 Score = 459 (166.6 bits), Expect = 8.2e-43, P = 8.2e-43
 Identities = 98/225 (43%), Positives = 138/225 (61%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ         G+D+I +ARTGTGKT +F IP
Sbjct:   187 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIP 245

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             ++ K+    +   RGR P  LVLAPTRELA QV ++F +    L   C YGGTP   Q+ 
Sbjct:   246 LIVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIE 305

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
              +  G+D +VGTPGR+ D ++   L+L++++ VVLDE DQML +GFA+ VE IL     +
Sbjct:   306 RMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKK 365

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
                 N Q+++FSAT P W+ ++  KY+K+    VDL+G   QK A
Sbjct:   366 DSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 410


>UNIPROTKB|F6V8G4 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
            Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
        Length = 786

 Score = 459 (166.6 bits), Expect = 8.3e-43, P = 8.3e-43
 Identities = 98/225 (43%), Positives = 138/225 (61%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             EG   S   IS++ +  L  RG++ LFPIQ         G+D+I +ARTGTGKT +F IP
Sbjct:   187 EGA-FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIP 245

Query:   157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
             ++ K+    +   RGR P  LVLAPTRELA QV ++F +    L   C YGGTP   Q+ 
Sbjct:   246 LIVKLQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIE 305

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----E 271
              +  G+D +VGTPGR+ D ++   L+L++++ VVLDE DQML +GFA+ VE IL     +
Sbjct:   306 RMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKK 365

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
                 N Q+++FSAT P W+ ++  KY+K+    VDL+G   QK A
Sbjct:   366 DSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 410


>UNIPROTKB|Q9KLE2 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
            process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 448 (162.8 bits), Expect = 4.1e-42, P = 4.1e-42
 Identities = 97/224 (43%), Positives = 140/224 (62%)

Query:    95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
             +D  +  S L ++  I++AL   G     PIQ A +   ++GRD +G+A+TGTGKT AF 
Sbjct:    22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81

Query:   155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
             +P+L+K+     K      P  +V+APTRELA QV  E     ++   L  + +YGG  I
Sbjct:    82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135

Query:   212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
               QMRAL  G   VVGTPGRV DLI R+ L+L E    +LDEAD+ML +GF +DV  I+E
Sbjct:   136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
             + P++ Q ++FSATMPP ++ +  ++L+NP  VD+ G S+Q +A
Sbjct:   196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 238


>TIGR_CMR|VC_A0804 [details] [associations]
            symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
            ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
            KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
            Uniprot:Q9KLE2
        Length = 663

 Score = 448 (162.8 bits), Expect = 4.1e-42, P = 4.1e-42
 Identities = 97/224 (43%), Positives = 140/224 (62%)

Query:    95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
             +D  +  S L ++  I++AL   G     PIQ A +   ++GRD +G+A+TGTGKT AF 
Sbjct:    22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81

Query:   155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
             +P+L+K+     K      P  +V+APTRELA QV  E     ++   L  + +YGG  I
Sbjct:    82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135

Query:   212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
               QMRAL  G   VVGTPGRV DLI R+ L+L E    +LDEAD+ML +GF +DV  I+E
Sbjct:   136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
             + P++ Q ++FSATMPP ++ +  ++L+NP  VD+ G S+Q +A
Sbjct:   196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 238


>TIGR_CMR|SO_4034 [details] [associations]
            symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
            acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
            ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
            PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
        Length = 623

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 107/282 (37%), Positives = 162/282 (57%)

Query:    94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
             S DE     +L +S++++ AL   G  K  PIQ A ++P M G+D++G+A+TGTGKT AF
Sbjct:     2 SSDERT-FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF 60

Query:   154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTP 210
              +P+L+K+            P  LVLAPTRELA QV + F   A    +   + +YGG  
Sbjct:    61 ALPLLNKVTSQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQS 113

Query:   211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
             +  Q+ AL  G   +VGTPGRV+D ++R  L L  +Q +VLDEAD+ML +GF +D+E IL
Sbjct:   114 MQQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWIL 173

Query:   271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330
             E  P  RQ  +FSATMP  I+ + NK+LKN   + +   +     D I    +  S +  
Sbjct:   174 EHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIA--ASHTTVDSIEQRFVQVSQH-N 230

Query:   331 KVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
             K+E AL  + + V  T  ++++++    + C+ ++ K   RG
Sbjct:   231 KLE-ALVRVLE-VENTEGIIIFVRTR--NSCVELAEKLEARG 268


>UNIPROTKB|Q5L3G9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
            ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
            KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
            BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
        Length = 467

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 90/201 (44%), Positives = 132/201 (65%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +SQ+++ A+ R G  +  PIQ   +  ++Q +D+IG+A+TGTGKT AFGIPI++K+ 
Sbjct:     6 ELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV- 64

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
               N K+   +    LV+APTRELA QV +E ++  +   +  + +YGG  I  Q+RAL  
Sbjct:    65 --NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR+ID I R  L L  V  VVLDEAD+ML++GF ED+E IL  +P  RQ++
Sbjct:   120 HPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMNEP 200


>TAIR|locus:2034481 [details] [associations]
            symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
            "RNA methylation" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
            EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
            OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
            IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
            UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
            PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
            KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
            PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
            GermOnline:AT1G31970 Uniprot:Q9C551
        Length = 537

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 96/194 (49%), Positives = 126/194 (64%)

Query:   124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLA 180
             PIQ       + GRD+IG A+TG+GKTLAFGIP +  ++K N+K G G    NP CLVL+
Sbjct:   139 PIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLS 198

Query:   181 PTRELAKQVEKEFHESA-P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
             PTRELA Q+     E+  P  L +ICVYGG+    Q+ A+  GVD V+GTPGR+ DLI+ 
Sbjct:   199 PTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIES 258

Query:   239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
             N L LS+V FVVLDEAD+ML +GF E V  IL    + RQ +MFSAT P  +  L  +++
Sbjct:   259 NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318

Query:   299 K-NPLTVDLVGDSD 311
               NP+ V ++G  D
Sbjct:   319 DPNPIKV-IIGSVD 331


>UNIPROTKB|P25888 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
            PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
            ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
            MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
            EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
            KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
            EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
            BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
            Genevestigator:P25888 Uniprot:P25888
        Length = 454

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 86/211 (40%), Positives = 136/211 (64%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +    L +S DI+ A+A +G  +  PIQ+  +   ++GRD++  A+TGTGKT  F +P+L
Sbjct:     1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query:   159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQM 215
               +I   + H +GR P+  L+L PTRELA Q+ +   + +  L+  ++ V+GG  I+ QM
Sbjct:    61 QHLIT-RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L  GVD +V TPGR++DL  +NA+ L +V+ +VLDEAD+ML +GF  D+  +L +LP 
Sbjct:   120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              RQ+++FSAT    I++L  K L NPL +++
Sbjct:   180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEV 210


>UNIPROTKB|A0R8U6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
            "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
            ProteinModelPortal:A0R8U6 STRING:A0R8U6
            EnsemblBacteria:EBBACT00000069056 GeneID:4546566
            GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
        Length = 528

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>UNIPROTKB|Q63GX5 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
            "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
            ProteinModelPortal:Q63GX5 STRING:Q63GX5
            EnsemblBacteria:EBBACT00000041470 GeneID:3022962
            GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
            BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
        Length = 528

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>UNIPROTKB|Q6HPE6 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:281309 "Bacillus thuringiensis serovar konkukian str.
            97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
            ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
            GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
            PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
        Length = 528

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>UNIPROTKB|Q73EU1 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
            OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
            RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
            DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
            GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
            Uniprot:Q73EU1
        Length = 525

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>UNIPROTKB|Q81IT9 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
            ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
            STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
            GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
            PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
        Length = 533

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>UNIPROTKB|Q81VG0 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>TIGR_CMR|BA_0247 [details] [associations]
            symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
            GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
            RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
            HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
            EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
            EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
            GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
            BioCyc:BANT260799:GJAJ-255-MONOMER
            BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
        Length = 528

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 86/201 (42%), Positives = 130/201 (64%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L +S  ++ ++   G  +  PIQ   +  A+QG+D+IG+A+TGTGKT AFG+P+LDK+ 
Sbjct:     6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
                E   +G     +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL  
Sbjct:    66 THKESV-QG-----IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
                 +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q++
Sbjct:   120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179

Query:   281 MFSATMPPWIRSLTNKYLKNP 301
             +FSATMP  IR +  +++  P
Sbjct:   180 LFSATMPDPIRRIAERFMTEP 200


>TIGR_CMR|CPS_1726 [details] [associations]
            symbol:CPS_1726 "RNA helicase DeaD" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
            STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
            OMA:WIVKGVE ProtClustDB:CLSK741103
            BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
        Length = 611

 Score = 412 (150.1 bits), Expect = 2.5e-38, P = 2.5e-38
 Identities = 86/211 (40%), Positives = 132/211 (62%)

Query:    94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
             ++ E +  + L + +++++A+   G +    IQ   + P + G+D++G A+TGTGKT AF
Sbjct:    10 TEPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAF 69

Query:   154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTP 210
             G+P L KI    +K      P  +VLAPTRELA QV +    F +    L    +YGG  
Sbjct:    70 GLPALAKIDTSIKK------PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQS 123

Query:   211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
                Q + L+ G   VVGTPGR++D ++R +L L E++  VLDEAD+ML++GF ED++ IL
Sbjct:   124 YGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWIL 183

Query:   271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
             + +P+  Q  +FSATMPP IR + N++LK+P
Sbjct:   184 DHIPKTAQMCLFSATMPPAIRKIANRFLKDP 214


>UNIPROTKB|Q0C354 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
            GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
            BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
        Length = 464

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 87/209 (41%), Positives = 130/209 (62%)

Query:   100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
             D   L ++  I+ +L + G +   PIQ+  +   +QGRD++G A+TGTGKTLAF  PILD
Sbjct:     8 DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILD 67

Query:   160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
             ++ + N      R    LVLAPTRELA Q+   F  + +  +L  + V GG  I  Q+R 
Sbjct:    68 RLSR-NASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQ 126

Query:   218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
             L+ G   +V TPGR+IDL+++ A++L +V+ ++LDEADQML +GF   +  I + +P  R
Sbjct:   127 LERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKR 186

Query:   278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             Q++ FSATMP  + SL   +L+NP  V +
Sbjct:   187 QTLFFSATMPKAVESLAATFLRNPAEVSV 215


>UNIPROTKB|Q4K8U0 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
            evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
            GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
            GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
            ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
            Uniprot:Q4K8U0
        Length = 557

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 88/206 (42%), Positives = 130/206 (63%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L++  +IVAA+   G  +   IQ+  +   + G DMIG+A+TGTGKT AF +PIL +I  
Sbjct:    11 LELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDP 70

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
                     R P  L+LAPTRELA QV   F   A   P +  + VYGG P+  Q++A+  
Sbjct:    71 SK------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   VV TPGR+ D ++R+   L+ V  +VLDEAD+ML +GF +D+EVI + +P+ RQ++
Sbjct:   125 GAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTV 184

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
             +FSAT+P  IR++  ++LK+P  V +
Sbjct:   185 LFSATLPQSIRAIAERHLKDPKHVKI 210


>TAIR|locus:2035741 [details] [associations]
            symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
            IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
            UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
            PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
            KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
            OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
            Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
        Length = 501

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 94/250 (37%), Positives = 150/250 (60%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-- 167
             ++  + + G ++  PIQ      AM+GRD+IG A TG+GKTL++ +P    I+  N +  
Sbjct:   110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA---IVHVNAQPM 166

Query:   168 --HGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVD 223
               HG G  P+ LVLAPTRELA Q+++E  +  S+  + T C+YGG P   Q+R L  GV+
Sbjct:   167 LAHGDG--PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVE 224

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
              V+ TPGR+ID+++ N  NL  V ++VLDEAD+ML +GF   +  I+  +  +RQ++ +S
Sbjct:   225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +  L+ K+L NP  V ++G SD K    I    I   ++  +  N L  L +++
Sbjct:   285 ATWPKEVEQLSKKFLYNPYKV-IIGSSDLKANRAIR--QIVDVISESQKYNKLVKLLEDI 341

Query:   344 MQTAWLMLWL 353
             M  + ++++L
Sbjct:   342 MDGSRILVFL 351


>UNIPROTKB|Q11039 [details] [associations]
            symbol:deaD "Cold-shock DEAD box protein A homolog"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
            GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
            PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
            RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
            PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
            EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
            GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
            PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
            ProtClustDB:CLSK791051 Uniprot:Q11039
        Length = 563

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 100/236 (42%), Positives = 134/236 (56%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L I   ++ A+   G      IQ A +   M G D++G A+TGTGKT AF IP+L KI  
Sbjct:    18 LQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI-D 76

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
                K      P  LVL PTRELA QV + F         L+ + +YGG+  + Q+  L  
Sbjct:    77 ITSKV-----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRR 131

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   VVGTPGR+ID ++R  L+LS V F+VLDEAD+ML++GFA+DVE IL   P+ +Q  
Sbjct:   132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             +FSATMPP IR L+ KYL +P  V     +   +A+ IS   I  +  M  +   L
Sbjct:   192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKT--AVAENISQSYIQVARKMDALTRVL 245


>UNIPROTKB|Q48PB7 [details] [associations]
            symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
            putative" species:264730 "Pseudomonas syringae pv. phaseolicola
            1448A" [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
            KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
            ProtClustDB:CLSK865855 Uniprot:Q48PB7
        Length = 625

 Score = 409 (149.0 bits), Expect = 7.1e-38, P = 7.1e-38
 Identities = 86/215 (40%), Positives = 136/215 (63%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  + L +S+ +V A+   G ++  P+Q+  +   +QGRD++  A+TGTGKT  F +PIL
Sbjct:     1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query:   159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPI 211
             +++        +++HG  R P  LVL PTRELA QV + F   A  L  +  C++GG  +
Sbjct:    61 ERLFPNGVPDKSQRHGP-RQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGM 119

Query:   212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
             + Q++A+  GVD +V  PGR++DL  + +++LS V+ +VLDEAD+ML +GF  DV+ +L 
Sbjct:   120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             RLP  RQ+++FSAT    I SL  K L NP  +++
Sbjct:   180 RLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEV 214


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 96/271 (35%), Positives = 147/271 (54%)

Query:   110 IVAALARR----GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             I+A L  R    G     P+Q A +   + GRD++  A TG+GKT AF +P+L ++ +  
Sbjct:    16 IIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAK 75

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYG 221
                       CLVL PTRELA+QV   F   A      L  +  +GG  ++ QM++L  G
Sbjct:    76 SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAG 135

Query:   222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
              D +V TPGR++DL+  NAL L++V   VLDEAD+MLS+GF E++E +L  LP+ +Q+++
Sbjct:   136 ADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLL 195

Query:   282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQ 341
             FSAT P  +R+LT K L  PL   L  + +  +   +       ++N ++ + AL  L  
Sbjct:   196 FSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV------ITVNREQ-KTAL--LAH 246

Query:   342 NVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
              + Q  W    + V   + C  ++ K   RG
Sbjct:   247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRG 277


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 96/271 (35%), Positives = 147/271 (54%)

Query:   110 IVAALARR----GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             I+A L  R    G     P+Q A +   + GRD++  A TG+GKT AF +P+L ++ +  
Sbjct:    16 IIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAK 75

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYG 221
                       CLVL PTRELA+QV   F   A      L  +  +GG  ++ QM++L  G
Sbjct:    76 SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAG 135

Query:   222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
              D +V TPGR++DL+  NAL L++V   VLDEAD+MLS+GF E++E +L  LP+ +Q+++
Sbjct:   136 ADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLL 195

Query:   282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQ 341
             FSAT P  +R+LT K L  PL   L  + +  +   +       ++N ++ + AL  L  
Sbjct:   196 FSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV------ITVNREQ-KTAL--LAH 246

Query:   342 NVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
              + Q  W    + V   + C  ++ K   RG
Sbjct:   247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRG 277


>DICTYBASE|DDB_G0281925 [details] [associations]
            symbol:DDB_G0281925 "DEAD/DEAH box helicase"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
            ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
            GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
            Uniprot:Q54T87
        Length = 586

 Score = 402 (146.6 bits), Expect = 2.3e-37, P = 2.3e-37
 Identities = 85/187 (45%), Positives = 127/187 (67%)

Query:   136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
             G D++G A TG+GKTLAF +P L KII   ++   G  PL LV+APTRELA+Q+E+    
Sbjct:   147 GNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKT 206

Query:   196 S--APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
             S    S+  +C YGG     Q R L  GVD V+GTPGR+ DL++++  +LS VQ++VLDE
Sbjct:   207 SIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKH--HLSSVQYLVLDE 264

Query:   254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
             AD+ML +GF   +E +++++P+ RQ++MFSAT P  ++ L +K+LK+P+ +  VG   Q+
Sbjct:   265 ADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKIT-VGS--QE 321

Query:   314 LADGISL 320
             L   I++
Sbjct:   322 LTGSINV 328


>TIGR_CMR|CPS_1418 [details] [associations]
            symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
            GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
            BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
        Length = 401

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 84/220 (38%), Positives = 135/220 (61%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S L +S  I+ A+A  G +K   IQ+  +   + G+D+I  A+TGTGKT +F +P+L
Sbjct:     1 MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60

Query:   159 DKI-IKFNE--KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISH 213
             +++  ++ E  K  R +    L+L PTRELA QVE    + A  LD  ++ +YGG     
Sbjct:    61 EQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120

Query:   214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
             Q + L +GVD +V TPGR++D+  +  L+  E+  +VLDEAD+ML +GF +D+  I+ERL
Sbjct:   121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180

Query:   274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
             P++RQ+++FSATM   +R L  + +  P+ + +  D   K
Sbjct:   181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASK 220


>UNIPROTKB|Q4K4H4 [details] [associations]
            symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
            EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
            ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
            PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
        Length = 622

 Score = 403 (146.9 bits), Expect = 3.3e-37, P = 3.3e-37
 Identities = 85/215 (39%), Positives = 134/215 (62%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  + L +S+ +V A+   G ++  P+Q+  +   +QGRD++  A+TGTGKT  F +PIL
Sbjct:     1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query:   159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI--CVYGGTPI 211
             +++        +++HG  R P  LVL PTRELA QV   F   A  L  +  C++GG  +
Sbjct:    61 ERLFPNGHPDKSQRHGP-RQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGM 119

Query:   212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
             + Q++A+  GVD +V  PGR++DL  + +++LS V+ +VLDEAD+ML +GF  DV+ +L 
Sbjct:   120 NPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179

Query:   272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             RLP  RQ+++FSAT    I  L  K L NP  +++
Sbjct:   180 RLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEV 214


>UNIPROTKB|O05855 [details] [associations]
            symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
            species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
            wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
            EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
            RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
            EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
            GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
            KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
            TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
            Uniprot:O05855
        Length = 527

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 94/248 (37%), Positives = 135/248 (54%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             +KL +  +IV AL   GI + F IQ+  L  A+ G D+IG+ARTG GKT AFG+P+L +I
Sbjct:    13 AKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRI 72

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE------FHESAPSLD----------TICV 205
                +        P  LV+ PTREL  QV  +      +  + P  D           + +
Sbjct:    73 TSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSI 132

Query:   206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
             YGG P   Q+ AL  G D VVGTPGR++DL ++  L L  +  +VLDEAD+ML +GF  D
Sbjct:   133 YGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPD 192

Query:   266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
             +E IL ++P +RQSM+FSATMP  I +L   ++  P  +         + D    + +  
Sbjct:   193 IERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQF-VYR 251

Query:   326 SMNMQKVE 333
             +  + KVE
Sbjct:   252 AHALDKVE 259


>UNIPROTKB|Q65N62 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
            EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
            ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
            EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
            GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
            GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
            PATRIC:18946609 ProtClustDB:CLSK886742
            BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
        Length = 487

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 83/198 (41%), Positives = 122/198 (61%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             +S D+  A+ R G  +  PIQ   +   +  +D+IG+A+TGTGKT AFGIP+++KI    
Sbjct:    10 LSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI---- 65

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
               +    N   +V+APTRELA QV +E ++         + +YGG  I  Q+RAL     
Sbjct:    66 --NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPH 123

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
              +VGTPGR++D I R  + L  V  VVLDEAD+ML++GF ED+E IL  +P   Q+++FS
Sbjct:   124 IIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFS 183

Query:   284 ATMPPWIRSLTNKYLKNP 301
             ATMP  I+ +  +++ NP
Sbjct:   184 ATMPAPIKRIAERFMTNP 201


>TIGR_CMR|CPS_3401 [details] [associations]
            symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
            STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
            OMA:HLIKEHQ ProtClustDB:CLSK907013
            BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
        Length = 432

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 99/278 (35%), Positives = 149/278 (53%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             ++L +   ++A LA     +  PIQ   +     GRD+I  A TG+GKT  F +P+L K+
Sbjct:    11 TELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKL 70

Query:   162 ---IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQ 214
                I    K+ +G     LVL PTRELAKQV       A      + T+ V+GG  ++ Q
Sbjct:    71 REDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQ 130

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             M AL  GVD +V TPGR++DLI  NA+ L +V+ +VLDEAD+MLS+GF E++  +L   P
Sbjct:   131 MLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTP 190

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
             + +Q+++FSAT P  + +LT + L NP+ + L      + AD  +L     ++N  +   
Sbjct:   191 KKKQTLLFSATFPEQVTTLTQELLNNPIEIQL------QSADASTLVQRVFTVNKGEKTA 244

Query:   335 ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
              L  L   + Q  W    + V     C  ++ K   RG
Sbjct:   245 VLAHL---IQQEQWRQALIFVNAKHHCEHLAEKLAKRG 279


>UNIPROTKB|P96614 [details] [associations]
            symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI] [GO:0010501 "RNA secondary
            structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
            GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
            EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
            ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
            EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
            PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
            GO:GO:0010501 Uniprot:P96614
        Length = 494

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 80/199 (40%), Positives = 125/199 (62%)

Query:   105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
             ++S D++ A+ R G  +  PIQ   +   +  +D+IG+A+TGTGKT AFGIP+++KI   
Sbjct:     9 NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI--- 65

Query:   165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGV 222
                +    N   +V+APTRELA QV +E ++         + +YGG  I  Q+RAL    
Sbjct:    66 ---NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122

Query:   223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
             + +VGTPGR++D I R  + L+ V  VV+DEAD+ML++GF +D+E IL  +P   Q+++F
Sbjct:   123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182

Query:   283 SATMPPWIRSLTNKYLKNP 301
             SATMP  I+ +  +++  P
Sbjct:   183 SATMPAPIKRIAERFMTEP 201


>TAIR|locus:2162022 [details] [associations]
            symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
            EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
            IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
            UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
            PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
            KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
            OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
            Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
        Length = 591

 Score = 396 (144.5 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 94/286 (32%), Positives = 167/286 (58%)

Query:    81 QSAVDDYVAYDDSSKD---EGLDISK-LDISQD------IVAALARRGISKLFPIQKAVL 130
             Q+  +  VA   + +D   EG D+ K + + QD      I+ A+A+ G ++  PIQ    
Sbjct:   137 QAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGW 196

Query:   131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
               A++GRD+IG A TG+GKTLA+ +P L  +     + G+   P+ L+LAPTRELA Q++
Sbjct:   197 PMALKGRDLIGIAETGSGKTLAYLLPALVHV-SAQPRLGQDDGPIVLILAPTRELAVQIQ 255

Query:   191 KEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
             +E  +      + + C+YGG P   Q+R L  GV+ V+ TPGR+ID+++    NL  V +
Sbjct:   256 EESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTY 315

Query:   249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             +VLDEAD+ML +GF   +  I+ ++  +RQ++++SAT P  + +L  ++L++P    ++G
Sbjct:   316 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKA-IIG 374

Query:   309 DSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLK 354
              +D K    I+   +   +   +  N L +L + +M  + ++++++
Sbjct:   375 STDLKANQSIN--QVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVE 418


>UNIPROTKB|Q81QF0 [details] [associations]
            symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 87/227 (38%), Positives = 134/227 (59%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L IS+     L   GI++  PIQ+  +   + G+D+IG+A+TGTGKTLAF +PIL+KI 
Sbjct:     9 ELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI- 67

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALD 219
                       +   L++APTRELA Q+  E  +       ++ + +YGG  ++ Q+R L 
Sbjct:    68 -----DPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query:   220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
                  VV TPGR++D I+R  ++LS +  +VLDEADQML  GF  D+E IL+  P ++Q+
Sbjct:   123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query:   280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
             M+FSAT+P  I+ L  +Y+  P  + +   S++   D I    I T+
Sbjct:   183 MLFSATIPKDIKKLAKRYMDEPQMIQV--QSEEVTVDTIEQRVIETT 227


>TIGR_CMR|BA_2475 [details] [associations]
            symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
            RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
            DNASU:1085525 EnsemblBacteria:EBBACT00000011128
            EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
            GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
            KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
            ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
            BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
        Length = 450

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 87/227 (38%), Positives = 134/227 (59%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             +L IS+     L   GI++  PIQ+  +   + G+D+IG+A+TGTGKTLAF +PIL+KI 
Sbjct:     9 ELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI- 67

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALD 219
                       +   L++APTRELA Q+  E  +       ++ + +YGG  ++ Q+R L 
Sbjct:    68 -----DPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK 122

Query:   220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
                  VV TPGR++D I+R  ++LS +  +VLDEADQML  GF  D+E IL+  P ++Q+
Sbjct:   123 GNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQT 182

Query:   280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
             M+FSAT+P  I+ L  +Y+  P  + +   S++   D I    I T+
Sbjct:   183 MLFSATIPKDIKKLAKRYMDEPQMIQV--QSEEVTVDTIEQRVIETT 227


>UNIPROTKB|P0A9P6 [details] [associations]
            symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
            "Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000027 "ribosomal large
            subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
            process" evidence=IGI] [GO:0003724 "RNA helicase activity"
            evidence=IDA] [GO:0070417 "cellular response to cold"
            evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
            GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
            Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
            RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
            DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
            PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
            EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
            KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
            EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
            BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
            Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
        Length = 629

 Score = 396 (144.5 bits), Expect = 2.2e-36, P = 2.2e-36
 Identities = 87/204 (42%), Positives = 126/204 (61%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L +   I+ AL   G  K  PIQ   +   + GRD++G A+TG+GKT AF +P+L  +  
Sbjct:    11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL-- 68

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDY 220
                     + P  LVLAPTRELA QV +   +F +    ++ + +YGG     Q+RAL  
Sbjct:    69 ----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ 124

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   VVGTPGR++D +KR  L+LS++  +VLDEAD+ML +GF EDVE I+ ++P+  Q+ 
Sbjct:   125 GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184

Query:   281 MFSATMPPWIRSLTNKYLKNPLTV 304
             +FSATMP  IR +T +++K P  V
Sbjct:   185 LFSATMPEAIRRITRRFMKEPQEV 208


>TIGR_CMR|SPO_1443 [details] [associations]
            symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
            ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
            PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
        Length = 471

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 83/224 (37%), Positives = 129/224 (57%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             S+L+++  ++ A+   G     PIQ   + PA++GRD++G A+TGTGKT +F +P++  +
Sbjct:     5 SELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALD 219
              +      R R P  LVL PTRELA QV + F  +     L    + GG     Q   +D
Sbjct:    65 AR---GRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALID 121

Query:   220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
              GVD ++ TPGR++D  +R  L L+ VQ +V+DEAD+ML +GF  D+E I    P  RQ+
Sbjct:   122 RGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQT 181

Query:   280 MMFSATMPPWIRSLTNKYLKNPLTVDLV--GDSDQKLADGISLY 321
             + FSATM P I  +TN +L  P  +++     + + +  G+ L+
Sbjct:   182 LFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLF 225


>UNIPROTKB|E1C2R8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
            development" evidence=IEA] [GO:0072358 "cardiovascular system
            development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
            Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
        Length = 496

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 88/241 (36%), Positives = 144/241 (59%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++ AL  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:    99 QYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 155

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   156 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 215

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   216 ICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 275

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++ + ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   276 ATWPKEVRQLAEDFLQDYVQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 332

Query:   344 M 344
             M
Sbjct:   333 M 333


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 83/211 (39%), Positives = 126/211 (59%)

Query:   100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
             +  KL +   ++ A+   G     PIQK  +   ++G +++G+A TGTGKT A+ +P+L 
Sbjct:     3 EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62

Query:   160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRA 217
             +I        RG+    L++ PTRELA QV  E  +    L    + VYGG  I  Q+R 
Sbjct:    63 RI-------QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRG 115

Query:   218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
             L  GV+ +VGTPGR++D I R     +E++ V+LDEAD+ML +GF +D+E IL  L   +
Sbjct:   116 LRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175

Query:   278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             Q+++FSAT+P  I+++  K+L    TV LVG
Sbjct:   176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVG 206


>UNIPROTKB|Q485I3 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 83/217 (38%), Positives = 132/217 (60%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L  S L + QD+V  L+  G  ++ PIQ   L   ++G+D+IG A+TG+GKT AFG+ +L
Sbjct:    10 LAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQM 215
             +K+     K  R ++   +V+ PTRELA QV KE  + A  +  I +    GGTP   Q+
Sbjct:    70 NKL---EVKKFRIQS---MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQI 123

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
              +L++G   +VGTPGR+ + + +  L L  +  +VLDEAD+ML +GF   ++ I+ R P 
Sbjct:   124 GSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
             +RQ+++FSAT P  I+S++   + +P+ V +    DQ
Sbjct:   184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQ 220


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 83/211 (39%), Positives = 126/211 (59%)

Query:   100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
             +  KL +   ++ A+   G     PIQK  +   ++G +++G+A TGTGKT A+ +P+L 
Sbjct:     3 EFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62

Query:   160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRA 217
             +I        RG+    L++ PTRELA QV  E  +    L    + VYGG  I  Q+R 
Sbjct:    63 RI-------QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRG 115

Query:   218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
             L  GV+ +VGTPGR++D I R     +E++ V+LDEAD+ML +GF +D+E IL  L   +
Sbjct:   116 LRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175

Query:   278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             Q+++FSAT+P  I+++  K+L    TV LVG
Sbjct:   176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVG 206


>TIGR_CMR|CPS_1125 [details] [associations]
            symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
            ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
            KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
            BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
        Length = 466

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 84/253 (33%), Positives = 146/253 (57%)

Query:    96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
             D     + L +S+ ++ A+  +G     PIQ   +   + GRD++  A+TGTGKT  F +
Sbjct:     3 DTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTL 62

Query:   156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISH 213
             P+L ++           N   L+L PTRELA Q+ +  E +    +L ++ V+GG  I+ 
Sbjct:    63 PLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINP 122

Query:   214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
             Q+  L  GVD +V TPGR++DL  + A+  S+++  +LDEAD+ML +GF  D++ ++  L
Sbjct:   123 QIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTAL 182

Query:   274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             P++RQ+++FSAT  P IR+L    + NPL + +  D++   A+ ++ +   T+++ ++  
Sbjct:   183 PKDRQNLLFSATFSPEIRALAKGMVNNPLEISV--DAENSTAEKVTQW--LTAVDKKRKP 238

Query:   334 NALFSL-KQNVMQ 345
               L  L K+N  Q
Sbjct:   239 AVLTHLIKENNWQ 251


>TIGR_CMR|CPS_1540 [details] [associations]
            symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
            ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
            KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
            BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
        Length = 468

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 83/217 (38%), Positives = 132/217 (60%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L  S L + QD+V  L+  G  ++ PIQ   L   ++G+D+IG A+TG+GKT AFG+ +L
Sbjct:    10 LAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQM 215
             +K+     K  R ++   +V+ PTRELA QV KE  + A  +  I +    GGTP   Q+
Sbjct:    70 NKL---EVKKFRIQS---MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQI 123

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
              +L++G   +VGTPGR+ + + +  L L  +  +VLDEAD+ML +GF   ++ I+ R P 
Sbjct:   124 GSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
             +RQ+++FSAT P  I+S++   + +P+ V +    DQ
Sbjct:   184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQ 220


>TIGR_CMR|DET_0183 [details] [associations]
            symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
            STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
            OMA:NFAPAVM ProtClustDB:CLSK837629
            BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
        Length = 560

 Score = 385 (140.6 bits), Expect = 1.3e-35, P = 1.3e-35
 Identities = 88/244 (36%), Positives = 139/244 (56%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +     + +  ++A +   G  +  PIQ   + P ++G D+IG A+TGTGKT A+ +P++
Sbjct:     1 MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
              K++  +   GR R    LVLAPTRELA Q+ + F        +    +YGG  +  Q+R
Sbjct:    61 QKML--STPRGRVRT---LVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIR 115

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD VV  PGR++D I R  +++  V+ +++DEAD+M  +GF  D++ IL+ L Q 
Sbjct:   116 RLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQP 175

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
              Q+++FSATMPP +R LT +   NP+T+ +     Q  A  +S +S+    N QK    +
Sbjct:   176 HQTLLFSATMPPEVRKLTLETQTNPVTIQI---GTQAPASSVS-HSVYPVKNHQKTPLLI 231

Query:   337 FSLK 340
               LK
Sbjct:   232 EILK 235


>FB|FBgn0037549 [details] [associations]
            symbol:CG7878 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
            GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
            UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
            GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
            FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
            GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
        Length = 703

 Score = 389 (142.0 bits), Expect = 2.3e-35, P = 2.3e-35
 Identities = 96/248 (38%), Positives = 146/248 (58%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP-ILDKIIKFNEK 167
             D++  + + G SK  PIQ       +QG DMIG A+TGTGKTLAF +P ++    +   +
Sbjct:   293 DMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPR 352

Query:   168 HGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
               RG   + LVLAPTRELA Q+E E  + S   +  +CVYGG   + Q+  L+ G + ++
Sbjct:   353 GTRGGANV-LVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQISDLERGAEIII 411

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
              TPGR+ DLI  N +++S + ++VLDEAD+ML +GF   +  ++  +  +RQ++M SAT 
Sbjct:   412 CTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMTSATW 471

Query:   287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM--NMQKVENALFSLKQNVM 344
             PP +R L   Y+KNP+ V  VG  D  LA   S+  I   M  +M K  N + S  +N+ 
Sbjct:   472 PPGVRRLAQSYMKNPIQV-CVGSLD--LAATHSVKQIIKLMEDDMDKF-NTITSFVKNMS 527

Query:   345 QTAWLMLW 352
              T  ++++
Sbjct:   528 STDKIIIF 535


>UNIPROTKB|Q83DM8 [details] [associations]
            symbol:rhlE "ATP-dependent RNA helicase" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
            KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
            BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
        Length = 420

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 83/208 (39%), Positives = 130/208 (62%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L +S +++ A+  +G  +  P+Q+  +   +Q RD++  A+TGTGKT  F +P+L ++  
Sbjct:    15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74

Query:   164 FNEKHGRGRNPL--CLVLAPTRELAKQV-E--KEFHESAPSLDTICVYGGTPISHQMRAL 218
                   R   P+   L+L PTRELA QV E  + + +  P   T+ V+GG  I  Q+  L
Sbjct:    75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATV-VHGGVSIKPQINHL 133

Query:   219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
               GVD +V TPGR++DL+ +  LNLS V+F VLDEAD+ML +GF  D+  IL+ LP++RQ
Sbjct:   134 RRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             +++FSAT    I+ LT+K L +P  +++
Sbjct:   194 NLLFSATFSKEIKELTDKLLHSPALIEV 221


>TIGR_CMR|CBU_0670 [details] [associations]
            symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
            putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
            OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
            GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
            ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
            Uniprot:Q83DM8
        Length = 420

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 83/208 (39%), Positives = 130/208 (62%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L +S +++ A+  +G  +  P+Q+  +   +Q RD++  A+TGTGKT  F +P+L ++  
Sbjct:    15 LGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFV 74

Query:   164 FNEKHGRGRNPL--CLVLAPTRELAKQV-E--KEFHESAPSLDTICVYGGTPISHQMRAL 218
                   R   P+   L+L PTRELA QV E  + + +  P   T+ V+GG  I  Q+  L
Sbjct:    75 SRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATV-VHGGVSIKPQINHL 133

Query:   219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
               GVD +V TPGR++DL+ +  LNLS V+F VLDEAD+ML +GF  D+  IL+ LP++RQ
Sbjct:   134 RRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             +++FSAT    I+ LT+K L +P  +++
Sbjct:   194 NLLFSATFSKEIKELTDKLLHSPALIEV 221


>TIGR_CMR|GSU_0914 [details] [associations]
            symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
            GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
            ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
            PATRIC:22024603 ProtClustDB:CLSK924451
            BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
        Length = 447

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 88/227 (38%), Positives = 131/227 (57%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +D         +   +A  G     PIQ   +   M GRD++G A+TGTGKT AF +PIL
Sbjct:     1 MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
              ++ +  E+ GR R    LV+APTRELA+Q+   F        L ++ VYGG  ++ Q++
Sbjct:    61 HRLQQ-GER-GRVR---ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQ 115

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  G + VV  PGR++D I +  ++LS ++ +VLDEADQM  +GF  D+  +L+ LP  
Sbjct:   116 KLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPR 175

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
             RQ+++FSATMP  IR+L    L +P+TV  VG     +    +LY +
Sbjct:   176 RQTLLFSATMPIDIRTLAQDILVDPVTVQ-VGTVAPAVTVAHALYPV 221


>TIGR_CMR|SO_3783 [details] [associations]
            symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
            RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
            KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
            Uniprot:Q8EAV8
        Length = 535

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 82/211 (38%), Positives = 131/211 (62%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S L +S  +  A++ +G     PIQ   +   + G+D++  A+TGTGKT  F +P+L
Sbjct:     1 MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query:   159 DKIIKFNE-KHGRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQM 215
             + + K ++ K G+ R    LVL PTRELA QV +  E +     L +  V+GG PI+ Q+
Sbjct:    61 ELLAKGHKAKSGQTR---ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQI 117

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L +GVD +V TPGR++DL+++NA+  ++++ +VLDEAD+ML +GF  D++ IL  LP 
Sbjct:   118 NKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              RQ++MFSAT    IR L    + +P+ + +
Sbjct:   178 KRQNLMFSATFSDEIRELAKGLVNHPVEISV 208


>UNIPROTKB|Q8EIE5 [details] [associations]
            symbol:dbpA "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 81/206 (39%), Positives = 130/206 (63%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             S L +  +++  L+  G +++ PIQ   L   + G D+IG+ +TG+GKT AFG+ +L+K+
Sbjct:     4 STLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL 63

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRAL 218
                + K  R +    LVL PTRELA QV +E    A  +  + V    GG P+  Q+ +L
Sbjct:    64 ---DVKRFRIQT---LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117

Query:   219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             ++G   +VGTPGR++D + RN L+LS +  +VLDEAD+ML +GF   ++ I+E+ P+ RQ
Sbjct:   118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
             +++FSAT P  I+S+  + + NP+ V
Sbjct:   178 TLLFSATFPEQIQSIAKQIMYNPVMV 203


>TIGR_CMR|SO_0897 [details] [associations]
            symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
            OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
            GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
        Length = 458

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 81/206 (39%), Positives = 130/206 (63%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             S L +  +++  L+  G +++ PIQ   L   + G D+IG+ +TG+GKT AFG+ +L+K+
Sbjct:     4 STLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKL 63

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRAL 218
                + K  R +    LVL PTRELA QV +E    A  +  + V    GG P+  Q+ +L
Sbjct:    64 ---DVKRFRIQT---LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117

Query:   219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             ++G   +VGTPGR++D + RN L+LS +  +VLDEAD+ML +GF   ++ I+E+ P+ RQ
Sbjct:   118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
             +++FSAT P  I+S+  + + NP+ V
Sbjct:   178 TLLFSATFPEQIQSIAKQIMYNPVMV 203


>WB|WBGene00002083 [details] [associations]
            symbol:inf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
            GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
            EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
            UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
            DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
            PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
            EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
            UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
            InParanoid:P27639 NextBio:890522 Uniprot:P27639
        Length = 402

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 91/256 (35%), Positives = 148/256 (57%)

Query:    82 SAVDDYVAYDDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
             S+V D     + + D+ ++    +++ ++++  +   G  K   IQK  + P   G+D+I
Sbjct:    11 SSVVDADGLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVI 70

Query:   141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
              +A++GTGKT  F + IL +I    + H +      LV+APTRELA+Q++K        L
Sbjct:    71 AQAQSGTGKTATFSVSILQRI-DHEDPHVQA-----LVMAPTRELAQQIQKVMSALGEYL 124

Query:   201 DTI---CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
             +     C+ GGT +    R L+ G+  VVGTPGRV D+I RNAL+ S ++  VLDEAD+M
Sbjct:   125 NVNILPCI-GGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183

Query:   258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
             LS GF + +  +   +PQ+ Q ++ SATMP  +  +TN++++NP+ + LV   D+   +G
Sbjct:   184 LSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRI-LV-KKDELTLEG 241

Query:   318 ISLYSIATSMNMQKVE 333
             I  + I    N+QK E
Sbjct:   242 IRQFYI----NVQKDE 253


>UNIPROTKB|E1BSC0 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
            IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
        Length = 1031

 Score = 391 (142.7 bits), Expect = 4.1e-35, P = 4.1e-35
 Identities = 86/210 (40%), Positives = 125/210 (59%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ AL + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   378 ISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 437

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   438 ALE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 496

Query:   224 AVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N     NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   497 IIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 556

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   557 MFSATFPRAMEALARRILSKPIEVQVGGRS 586


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 99/272 (36%), Positives = 153/272 (56%)

Query:    52 KSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVA-----YDDSSKDEG-----LDI 101
             KS+ +  T++   +S P  F+S       Q+ +D +++       D+S D+      +  
Sbjct:    18 KSKGTKDTKKNTEVSPPY-FQSPALDNVPQTEIDKFLSDHSIKITDASADKPSLRPIISF 76

Query:   102 SKLDIS-QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
             S L  S +D+ A L   G +    IQ A       GRD+IG A TG+GKTLAFG+P L K
Sbjct:    77 SFLPPSNKDLYAPLD--GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKK 134

Query:   161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
             ++    K    R PL +V++PTRELA Q+  +  + A  +D    C++GG     Q  AL
Sbjct:   135 VLDLKTKQKSCR-PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREAL 193

Query:   219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
                   VV TPGR+ DL    +L+L  V+++VLDEAD+ML  GF +D++ I+  +P   R
Sbjct:   194 KSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKR 252

Query:   278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
             Q++MF+AT PP +R+L + ++ +P+TV + GD
Sbjct:   253 QTVMFTATWPPIVRNLASTFMTSPVTVTIGGD 284


>TIGR_CMR|GSU_0522 [details] [associations]
            symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
            RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
            KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
            BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
        Length = 443

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 85/231 (36%), Positives = 135/231 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  + L++ + ++  +A  G S   PIQ+  L  ++ G+D+ G+A+TGTGKT AF I + 
Sbjct:     1 MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TI-CVYGGTPISHQMR 216
              K+++ + + G  R+P  ++LAPTREL  Q+EK+          TI  +YGG     Q  
Sbjct:    61 TKLLR-SGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKN 119

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-- 274
             AL  G D VVGTPGR+ID +K+   +L E++ +V+DEAD+M  +GF  D+  IL RLP  
Sbjct:   120 ALKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPY 179

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS--LYSI 323
               RQ++MFSAT+   +  L  +++  P  V +    +Q  A+ +   LY +
Sbjct:   180 DKRQNLMFSATLNQRVMELAYEFMNVPEKVAVT--PEQMTAERVEQVLYHV 228


>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
            symbol:PF14_0437 "helicase, truncated,
            putative" species:5833 "Plasmodium falciparum" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
            MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
            GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
            HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
        Length = 527

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 96/251 (38%), Positives = 145/251 (57%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             + I+K+     ++ +L    I    PIQ      A+ G+DMIG+A TG+GKTLAF +P  
Sbjct:   113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172

Query:   159 DKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS-LDTICVYGGTPISHQM 215
               I+ + N K+G G  P+ LVLAPTRELA+Q+ +E  + S  S +   C YGG P S Q+
Sbjct:   173 VHILAQPNLKYGDG--PIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQI 230

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
              AL  GV  ++  PGR+IDL+++N  NL  V ++VLDEAD+ML +GF   +  I++++  
Sbjct:   231 YALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRP 290

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
             +RQ++M+SAT P  +++L     K  P+ V+ VG         I    I      +K+ N
Sbjct:   291 DRQTLMWSATWPKEVQALAKDLCKEQPIQVN-VGSLTLTACRSIK-QEIYLLEEHEKIGN 348

Query:   335 ALFSLKQNVMQ 345
              L SL Q + +
Sbjct:   349 -LKSLLQRIFK 358


>UNIPROTKB|Q8IL13 [details] [associations]
            symbol:PF14_0437 "Helicase, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
            ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
            PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
            KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
            HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
        Length = 527

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 96/251 (38%), Positives = 145/251 (57%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             + I+K+     ++ +L    I    PIQ      A+ G+DMIG+A TG+GKTLAF +P  
Sbjct:   113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172

Query:   159 DKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS-LDTICVYGGTPISHQM 215
               I+ + N K+G G  P+ LVLAPTRELA+Q+ +E  + S  S +   C YGG P S Q+
Sbjct:   173 VHILAQPNLKYGDG--PIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQI 230

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
              AL  GV  ++  PGR+IDL+++N  NL  V ++VLDEAD+ML +GF   +  I++++  
Sbjct:   231 YALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRP 290

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
             +RQ++M+SAT P  +++L     K  P+ V+ VG         I    I      +K+ N
Sbjct:   291 DRQTLMWSATWPKEVQALAKDLCKEQPIQVN-VGSLTLTACRSIK-QEIYLLEEHEKIGN 348

Query:   335 ALFSLKQNVMQ 345
              L SL Q + +
Sbjct:   349 -LKSLLQRIFK 358


>TIGR_CMR|SPO_3833 [details] [associations]
            symbol:SPO_3833 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            KO:K05592 InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_169021.1
            ProteinModelPortal:Q5LLT8 GeneID:3196362 KEGG:sil:SPO3833
            PATRIC:23381169 HOGENOM:HOG000268794 OMA:MQHRSGR Uniprot:Q5LLT8
        Length = 709

 Score = 383 (139.9 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 91/232 (39%), Positives = 138/232 (59%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             LDI  +  +  ++ ALA RG   L  +Q+AV +P +   D++  ARTG+GKT+ FG+ I 
Sbjct:    23 LDIPLM--TSPLLDALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIA 80

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE----FHESAPSLDTICVYGGTPISHQ 214
               ++   E  G    PL L++APTRELA QV +E    F ++   + T C+ GG     +
Sbjct:    81 PTLLGEAETLGPPAAPLALIVAPTRELALQVSRELTWLFAKAGGRIAT-CI-GGMDARTE 138

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
              R L+ G   VVGTPGR+ D I R AL+L++++ VVLDEAD+ML +GF ED+E +L   P
Sbjct:   139 RRTLERGAHIVVGTPGRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAP 198

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
             ++R++++FSAT+ P I  L   Y +    +  +G   Q  +D IS  ++  S
Sbjct:   199 EDRRTLLFSATVSPAIAELAKTYQRQAARISTLGGERQH-SD-ISYQAVQVS 248


>UNIPROTKB|Q7L014 [details] [associations]
            symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
            GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
            IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
            ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
            MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
            PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
            Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
            KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
            HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
            PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
            NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
            CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
            Uniprot:Q7L014
        Length = 1031

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>UNIPROTKB|F1MX40 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
            EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
            Uniprot:F1MX40
        Length = 1032

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>UNIPROTKB|F1PK90 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
            Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
        Length = 1032

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>UNIPROTKB|I3LR20 [details] [associations]
            symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
            Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
        Length = 1032

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>MGI|MGI:1920895 [details] [associations]
            symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
            EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
            UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
            STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
            Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
            UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
            Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
            GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
        Length = 1032

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>RGD|708480 [details] [associations]
            symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
            HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
            EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
            RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
            STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
            Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
            UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
            ArrayExpress:Q62780 Genevestigator:Q62780
            GermOnline:ENSRNOG00000021637 Uniprot:Q62780
        Length = 1032

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>UNIPROTKB|Q62780 [details] [associations]
            symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
            KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
            OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
            PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
            ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
            PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
            KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
            ArrayExpress:Q62780 Genevestigator:Q62780
            GermOnline:ENSRNOG00000021637 Uniprot:Q62780
        Length = 1032

 Score = 387 (141.3 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/210 (40%), Positives = 126/210 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  I+ +L + G  K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                  G  P+ +++ PTRELA Q+ KE  + + +L    +CVYGGT IS Q+  L  G +
Sbjct:   439 SLE-EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   558 MFSATFPRAMEALARRILSKPIEVQVGGRS 587


>UNIPROTKB|A4QVP2 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
            RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
            EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
            Uniprot:A4QVP2
        Length = 396

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 92/258 (35%), Positives = 146/258 (56%)

Query:    92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +S+ DE +D   ++++  +++  +   G  +   IQ+  + P ++G D+I +A++GTGKT
Sbjct:    15 ESNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKT 74

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
               F I +L KI   N K  +      L+LAPTRELA+Q++K        ++  C    GG
Sbjct:    75 ATFSISVLQKI-DTNVKQCQA-----LILAPTRELAQQIQKVVVAIGDFMNIECHACIGG 128

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   M+AL  G   VVGTPGRV D+I+R  L    ++  VLDEAD+MLS GF E +  
Sbjct:   129 TSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYD 188

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I + LPQ+ Q ++ SATMP  +  +T K++++P+ + LV   D+   +GI  + IA    
Sbjct:   189 IFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRI-LV-KKDELTLEGIKQFYIAVEKE 246

Query:   329 MQKVENALFSLKQNVMQT 346
               K++  L  L + V  T
Sbjct:   247 EWKLDT-LSDLYETVTIT 263


>TIGR_CMR|CPS_2658 [details] [associations]
            symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
            ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
            PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
            Uniprot:Q480Z7
        Length = 399

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 87/247 (35%), Positives = 144/247 (58%)

Query:   100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
             +     + + I+  +  +G  +  PIQK  +   + G D++G A+TGTGKT AF +PI++
Sbjct:     3 EFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN 62

Query:   160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
             K  + N+   + ++   L+L PTRELA Q+ +   + +  L   T  VYGG     Q+ +
Sbjct:    63 KFGR-NKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS 121

Query:   218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
             ++ G+D +V TPGR++DLI+   +N   ++  VLDEAD ML +GF +DV+ I+ +LP++R
Sbjct:   122 IELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR 181

Query:   278 QSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKL--ADGISL-YSIAT 325
             Q+++FSATMP  I  L    L +P         +T+DLV  S   L  ++ + L ++I T
Sbjct:   182 QTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILT 241

Query:   326 SMNMQKV 332
               + +KV
Sbjct:   242 KADYEKV 248


>TIGR_CMR|GSU_0491 [details] [associations]
            symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
            KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
            BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
        Length = 450

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 80/212 (37%), Positives = 130/212 (61%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  ++L ++  I+ A+A  G ++  P+Q A +  A++  D++  A+TGTGKT AF +P L
Sbjct:     1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
              ++   +   G GR P  LVL PTRELA+QV      + +   + +  + GG P   Q+R
Sbjct:    61 QRLS--SPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLR 118

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L   VD +V TPGR++DL+ R +L+LS ++ +VLDEAD+ML +GF++DV+ I    P  
Sbjct:   119 LLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPAT 178

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             RQ+++F+ATM   +  L  + L+ P  +D+ G
Sbjct:   179 RQTLLFTATMDSAMARLAGRLLREPERIDIAG 210


>ZFIN|ZDB-GENE-030131-667 [details] [associations]
            symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
            pancreas development" evidence=IMP] [GO:0007420 "brain development"
            evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
            evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
            GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
            GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
            EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
            ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
        Length = 1035

 Score = 385 (140.6 bits), Expect = 1.8e-34, P = 1.8e-34
 Identities = 85/210 (40%), Positives = 124/210 (59%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             IS  ++ AL +    K  PIQ   +   M GRD+IG A+TG+GKT+AF +P+   I+   
Sbjct:   364 ISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD-Q 422

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
                G    PL +++ PTRELA Q+ KE  + + SL    +CVYGGT IS Q+  L  G +
Sbjct:   423 RPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAE 482

Query:   224 AVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N     NL  V +VV+DEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   483 IIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTV 542

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             MFSAT P  + +L  + L  P+ V + G S
Sbjct:   543 MFSATFPRTMEALARRILSKPVEVQVGGRS 572


>UNIPROTKB|A4R715 [details] [associations]
            symbol:DHH1 "ATP-dependent RNA helicase DHH1"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
            GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
        Length = 535

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 93/263 (35%), Positives = 144/263 (54%)

Query:    83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
             A D+    +D +  +GL+     + +D++  +   G  K  PIQ+  +  A+ GRD++ R
Sbjct:    31 ARDNRQQTEDVTNTKGLEFENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILAR 90

Query:   143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-- 200
             A+ GTGKT AF +P L+ I   N K  + +   CL+L PTRELA Q  +        L  
Sbjct:    91 AKNGTGKTAAFVVPALETI---NPKVSKIQ---CLILVPTRELAMQTSQVCKTLGKHLGI 144

Query:   201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
             + +   GGT +   +  L   V  VVGTPGR++DL  +N  +LSE    ++DEAD++LS+
Sbjct:   145 NVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSI 204

Query:   261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
              F   +E +L+  P++RQ M+FSAT P  ++  ++K + NP  ++L+   D+    GI+ 
Sbjct:   205 EFTPVIEQLLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLM---DELTLRGITQ 261

Query:   321 YSIATSMNMQKVE--NALFSLKQ 341
             Y  A     QKV   N LFS  Q
Sbjct:   262 Y-YAFVEEKQKVHCLNTLFSKLQ 283


>UNIPROTKB|A7E307 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
            CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
            GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
            IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
            Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
            InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
        Length = 650

 Score = 378 (138.1 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 334

Query:   344 M 344
             M
Sbjct:   335 M 335


>UNIPROTKB|E2RJ60 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
            Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
        Length = 650

 Score = 378 (138.1 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 334

Query:   344 M 344
             M
Sbjct:   335 M 335


>MGI|MGI:1914290 [details] [associations]
            symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0072358 "cardiovascular system
            development" evidence=IMP] [GO:2001014 "regulation of skeletal
            muscle cell differentiation" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
            GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
            GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
            ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
            EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
            RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
            UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
            IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
            REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
            GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
            InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
            CleanEx:MM_DDX17 Genevestigator:Q501J6
            GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
        Length = 650

 Score = 378 (138.1 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 334

Query:   344 M 344
             M
Sbjct:   335 M 335


>UNIPROTKB|C9JMU5 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
            HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
            STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
            ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
        Length = 652

 Score = 378 (138.1 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   101 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 157

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   158 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 217

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   218 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 277

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   278 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 334

Query:   344 M 344
             M
Sbjct:   335 M 335


>CGD|CAL0005725 [details] [associations]
            symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 368 (134.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 82/190 (43%), Positives = 122/190 (64%)

Query:   125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
             IQ   L   + GRD+IG A+TG+GKTL++ +P+L + I+  +     + P+ L+L+PTRE
Sbjct:   320 IQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML-RHIQDQQFSKDNQGPIGLILSPTRE 378

Query:   185 LAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA- 240
             LA Q+EKE   F +   +L   C YGG+ I +Q+  L  GV+ +VGTPGRVIDL+  N+ 
Sbjct:   379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438

Query:   241 --LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
               LNL    FVVLDEAD+M  +GF   V  IL ++  +RQ+++FSAT P  + +L  + L
Sbjct:   439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQIL 498

Query:   299 KNPLTVDLVG 308
              +P+ + +VG
Sbjct:   499 TDPVVI-IVG 507

 Score = 40 (19.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query:   310 SDQKLADGIS-LYSIATSMNMQKVENALFSLKQNVMQT 346
             +DQ+    ++ LY +   + +Q V  A+  +K+ ++++
Sbjct:   829 NDQERNGSLAKLYLLVEGLTLQSVTEAITLIKKKMLES 866


>UNIPROTKB|Q5ADL0 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
            EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
            ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
            KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
        Length = 884

 Score = 368 (134.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 82/190 (43%), Positives = 122/190 (64%)

Query:   125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
             IQ   L   + GRD+IG A+TG+GKTL++ +P+L + I+  +     + P+ L+L+PTRE
Sbjct:   320 IQSQALPTILSGRDVIGIAKTGSGKTLSYVLPML-RHIQDQQFSKDNQGPIGLILSPTRE 378

Query:   185 LAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA- 240
             LA Q+EKE   F +   +L   C YGG+ I +Q+  L  GV+ +VGTPGRVIDL+  N+ 
Sbjct:   379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438

Query:   241 --LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
               LNL    FVVLDEAD+M  +GF   V  IL ++  +RQ+++FSAT P  + +L  + L
Sbjct:   439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQIL 498

Query:   299 KNPLTVDLVG 308
              +P+ + +VG
Sbjct:   499 TDPVVI-IVG 507

 Score = 40 (19.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query:   310 SDQKLADGIS-LYSIATSMNMQKVENALFSLKQNVMQT 346
             +DQ+    ++ LY +   + +Q V  A+  +K+ ++++
Sbjct:   829 NDQERNGSLAKLYLLVEGLTLQSVTEAITLIKKKMLES 866


>UNIPROTKB|F1NQ09 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
            IPI:IPI00819782 ProteinModelPortal:F1NQ09
            Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
        Length = 451

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 91/214 (42%), Positives = 125/214 (58%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP-ILDKIIKFNEK 167
             DI+A + + G  K  PIQ       +QG D+IG A+TGTGKTLA+ +P  +    +   K
Sbjct:    63 DIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPK 122

Query:   168 HGRGRNPLCLVLAPTRELAKQVEKE-FHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
               RG  P  LVLAPTRELA QVE E    +     +IC+YGG     Q+  +  GVD V+
Sbjct:   123 DKRG-GPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVI 181

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
              TPGR+ DL   N +NL  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M SAT 
Sbjct:   182 ATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATW 241

Query:   287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
             P  +R L   YL+NP+ V  VG  D  ++ G+ L
Sbjct:   242 PDGVRRLAKSYLRNPMIV-YVGTLDLAVS-GVVL 273


>UNIPROTKB|Q92841 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0003713 "transcription coactivator activity" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0033148 "positive
            regulation of intracellular estrogen receptor signaling pathway"
            evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
            EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
            GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
            EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
            IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
            RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
            ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
            MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
            REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
            DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
            UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
            HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
            HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
            GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
            CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
            GO:GO:2001014 Uniprot:Q92841
        Length = 729

 Score = 378 (138.1 bits), Expect = 4.2e-34, P = 4.2e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   180 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 236

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   237 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 296

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   297 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 356

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   357 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 413

Query:   344 M 344
             M
Sbjct:   414 M 414


>UNIPROTKB|H3BLZ8 [details] [associations]
            symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
            "post-embryonic development" evidence=IEA] [GO:0072358
            "cardiovascular system development" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
            ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
            Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
        Length = 731

 Score = 378 (138.1 bits), Expect = 4.2e-34, P = 4.2e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   180 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 236

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   237 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 296

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   297 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 356

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   357 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 413

Query:   344 M 344
             M
Sbjct:   414 M 414


>UNIPROTKB|F1PID8 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
            Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
        Length = 736

 Score = 378 (138.1 bits), Expect = 4.3e-34, P = 4.3e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   182 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 238

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   239 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 298

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   299 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 358

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   359 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 415

Query:   344 M 344
             M
Sbjct:   416 M 416


>UNIPROTKB|F1SKQ0 [details] [associations]
            symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0072358 "cardiovascular system development"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
            EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
        Length = 736

 Score = 378 (138.1 bits), Expect = 4.3e-34, P = 4.3e-34
 Identities = 87/241 (36%), Positives = 142/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L  +  ++  PIQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   182 QYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 238

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+
Sbjct:   239 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE 298

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   299 ICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 358

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++   ++ VG+ +      I L  +   M  +K ++ L  L + +
Sbjct:   359 ATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNI-LQIVDVCMESEK-DHKLIQLMEEI 415

Query:   344 M 344
             M
Sbjct:   416 M 416


>TIGR_CMR|SO_1383 [details] [associations]
            symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
            ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
            PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
        Length = 433

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 78/213 (36%), Positives = 126/213 (59%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +I+ A++  G  K+ PIQ+  +    +G+D++  A+TGTGKT AF +PIL K+++ N   
Sbjct:    11 EILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVE-NPSE 69

Query:   169 GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
                 N   L+L PTRELA QV +  E +    +   + +YGG  +  Q + L  G D +V
Sbjct:    70 TLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIV 129

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
              TPGR+++ +    L+LS V F+VLDEAD+ML +GF+ D++ IL+ + + RQ+++FSAT 
Sbjct:   130 ATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATF 189

Query:   287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
                ++ L N+ +  P  +    D     AD +S
Sbjct:   190 SSAVKKLANEMMIKPQVIS--ADKQNTTADTVS 220


>ZFIN|ZDB-GENE-030131-925 [details] [associations]
            symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
            ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
        Length = 617

 Score = 374 (136.7 bits), Expect = 5.7e-34, P = 5.7e-34
 Identities = 87/225 (38%), Positives = 136/225 (60%)

Query:   124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK--FNEKHGRGRNPLCLVLAP 181
             PIQ      A+ G+DM+G A+TG+GKTL++ +P +  I    F E HG G  P+CLVLAP
Sbjct:   121 PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLE-HGDG--PICLVLAP 177

Query:   182 TRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
             TRELA+QV++   E   A  + + C+YGG P   Q+R L+ GV+  + TPGR+ID ++  
Sbjct:   178 TRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAG 237

Query:   240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
               NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+SAT P  +R L   +LK
Sbjct:   238 KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 297

Query:   300 NPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVM 344
               + ++ VG    +L+   ++  I    N  + E+ L  L + +M
Sbjct:   298 EYIQIN-VGAL--QLSANHNILQIVDVCNDGEKEDKLIRLLEEIM 339


>ZFIN|ZDB-GENE-030131-18 [details] [associations]
            symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
            UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
            KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
            Uniprot:F1QBS1
        Length = 671

 Score = 375 (137.1 bits), Expect = 6.6e-34, P = 6.6e-34
 Identities = 87/241 (36%), Positives = 141/241 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q ++  L ++   +   IQ      A+ GRDM+G A+TG+GKTLA+ +P    I+  N +
Sbjct:   104 QYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPA---IVHINHQ 160

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
                 RG  P+CLVLAPTRELA+QV++   +   S  + + CVYGG P   Q+R L+ GV+
Sbjct:   161 PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVE 220

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+S
Sbjct:   221 ICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 280

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   +L++ + ++ +G  +      I L  +   M  +K +N L  L + +
Sbjct:   281 ATWPKEVRQLAEDFLQDYVQIN-IGALELSANHNI-LQIVDVCMENEK-DNKLIQLMEEI 337

Query:   344 M 344
             M
Sbjct:   338 M 338


>SGD|S000003046 [details] [associations]
            symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
            family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
            "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
            EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
            ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
            MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
            EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
            KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
            KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
            GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
        Length = 523

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 88/245 (35%), Positives = 143/245 (58%)

Query:    81 QSAVDDYVAYDDSSKDEGLDISKLDI-SQDIVA--ALARRGISKL---FPIQKAVLEPAM 134
             QS +D+Y   ++ + ++ LD++   + S D ++  +  +  ISK     PIQ       +
Sbjct:    88 QSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWPYLL 147

Query:   135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194
              G+D++G A TG+GKT AFG+P +  ++  N++  RG     LV++PTRELA Q+     
Sbjct:   148 SGKDVVGVAETGSGKTFAFGVPAISHLM--NDQKKRGIQ--VLVISPTRELASQIYDNLI 203

Query:   195 --ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
                    +   CVYGG P   Q   L      VV TPGR++DL++  +++LS+V ++VLD
Sbjct:   204 VLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLD 262

Query:   253 EADQMLSVGFAEDVE-VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
             EAD+ML  GF ED++ +I E     RQ++MF+AT P  +R L + ++ NP+ V  +G++D
Sbjct:   263 EADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVS-IGNTD 321

Query:   312 QKLAD 316
             Q  A+
Sbjct:   322 QLTAN 326


>UNIPROTKB|Q8EBV7 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/210 (35%), Positives = 126/210 (60%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S L ++  +V  LA  G  +  PIQ   +   +  +D++  A+TGTGKT AF +PIL
Sbjct:     1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMR 216
               ++  N+     +    LVL PTRELA QV++ F + A   D      YGG  I  Q  
Sbjct:    61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
               + G+D ++ TPGR++D +++ ALNL+++  +V DEAD+ML +GF ++++ +L+++P  
Sbjct:   121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             RQ+++FSAT+   I S +   L++P  +++
Sbjct:   181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEV 210


>TIGR_CMR|SO_3388 [details] [associations]
            symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
            KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
            Uniprot:Q8EBV7
        Length = 409

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/210 (35%), Positives = 126/210 (60%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S L ++  +V  LA  G  +  PIQ   +   +  +D++  A+TGTGKT AF +PIL
Sbjct:     1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMR 216
               ++  N+     +    LVL PTRELA QV++ F + A   D      YGG  I  Q  
Sbjct:    61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
               + G+D ++ TPGR++D +++ ALNL+++  +V DEAD+ML +GF ++++ +L+++P  
Sbjct:   121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             RQ+++FSAT+   I S +   L++P  +++
Sbjct:   181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEV 210


>CGD|CAL0003204 [details] [associations]
            symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
            EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
            ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
            GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
            Uniprot:Q59LU0
        Length = 562

 Score = 369 (135.0 bits), Expect = 1.1e-33, P = 1.1e-33
 Identities = 83/194 (42%), Positives = 124/194 (63%)

Query:   117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE-KHGRGRNPL 175
             +G  K  PIQ      A+ GRDMIG A TG+GKTL++ +P +  I    + ++G G  P+
Sbjct:   145 QGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDG--PI 202

Query:   176 CLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
              LVLAPTRELA Q++ E   F +S+   +T CVYGG P   Q+R L  GV+  + TPGR+
Sbjct:   203 VLVLAPTRELAVQIQTECSKFGKSSRIRNT-CVYGGAPKGPQIRDLARGVEICIATPGRL 261

Query:   233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
             ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ++M+SAT P  ++ 
Sbjct:   262 IDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQ 321

Query:   293 LTNKYLKNPLTVDL 306
             LT  YL +P+ V +
Sbjct:   322 LTRDYLNDPIQVTI 335


>FB|FBgn0030631 [details] [associations]
            symbol:CG6227 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
            EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
            EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
            RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
            EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
            UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
            Uniprot:Q9VXW2
        Length = 1224

 Score = 378 (138.1 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 85/208 (40%), Positives = 125/208 (60%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             +S+  +  L R G  K  PIQ   +   M GRD+IG A+TG+GKTLAF +P+   I+   
Sbjct:   517 VSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP 576

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVD 223
                  G   + +++APTREL  Q+ K+  + + SL    +CVYGGT IS Q+  L  G +
Sbjct:   577 SMED-GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAE 635

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              +V TPGR+ID++  N+    NL  V +VVLDEAD+M  +GF   V  I++ +  +RQ++
Sbjct:   636 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 695

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             MFSAT P  + +L  + LK P+ V +VG
Sbjct:   696 MFSATFPRQMEALARRILKKPIEV-IVG 722


>UNIPROTKB|F1MBQ8 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
            class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
            receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
            receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IEA] [GO:0036002
            "pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
            of intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0003713 "transcription coactivator activity"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
            GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
            EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
            UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
            Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
            NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
        Length = 614

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>UNIPROTKB|J3KTA4 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003712 "transcription cofactor activity"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
            Ensembl:ENST00000578804 Uniprot:J3KTA4
        Length = 614

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>UNIPROTKB|P17844 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
            "circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
            evidence=IEA] [GO:0045069 "regulation of viral genome replication"
            evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
            evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
            [GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043517 "positive regulation of DNA damage response, signal
            transduction by p53 class mediator" evidence=IMP] [GO:0072332
            "intrinsic apoptotic signaling pathway by p53 class mediator"
            evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
            "regulation of skeletal muscle cell differentiation" evidence=ISS]
            [GO:0045667 "regulation of osteoblast differentiation"
            evidence=ISS] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0050681
            "androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
            of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
            "positive regulation of intracellular estrogen receptor signaling
            pathway" evidence=IDA] [GO:0003713 "transcription coactivator
            activity" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
            "pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
            GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
            GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
            GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
            EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
            RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
            PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
            IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
            DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
            PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
            Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
            CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
            HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
            InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
            EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
            ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
            Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
        Length = 614

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>UNIPROTKB|Q4R6M5 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
            HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
            Uniprot:Q4R6M5
        Length = 614

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>UNIPROTKB|Q5R4I9 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
            GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
            RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
            PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
            Uniprot:Q5R4I9
        Length = 614

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>MGI|MGI:105037 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
            species:10090 "Mus musculus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0001701 "in utero embryonic development"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IDA]
            [GO:0003713 "transcription coactivator activity" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
            receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=ISO]
            [GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
            [GO:0060765 "regulation of androgen receptor signaling pathway"
            evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
            p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
            skeletal muscle cell differentiation" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
            GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
            GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
            GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
            EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
            ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
            UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
            DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
            PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
            Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
        Length = 614

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>RGD|619906 [details] [associations]
            symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
            "Rattus norvegicus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
            activity" evidence=ISO] [GO:0003713 "transcription coactivator
            activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
            evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
            rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
            evidence=IDA] [GO:0030331 "estrogen receptor binding"
            evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
            "pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
            replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
            evidence=IDA] [GO:0050681 "androgen receptor binding"
            evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
            signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
            signaling pathway by p53 class mediator" evidence=IEA;ISO]
            [GO:2001014 "regulation of skeletal muscle cell differentiation"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
            GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
            GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
            GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
            EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
            UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
            Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
            UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
            Genevestigator:Q6AYI1 Uniprot:Q6AYI1
        Length = 615

 Score = 370 (135.3 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>UNIPROTKB|A5A6J2 [details] [associations]
            symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
            species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
            "estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
            differentiation" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=ISS]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
            cell differentiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
            GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
            GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
            GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
            CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
            UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
            GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
            Uniprot:A5A6J2
        Length = 614

 Score = 369 (135.0 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:    94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 152

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   153 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 210

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   211 IRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   271 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 328

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   329 -LIRLMEEIM 337


>UNIPROTKB|F1PEA6 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
            activity" evidence=IEA] [GO:0003712 "transcription cofactor
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
            Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
        Length = 671

 Score = 370 (135.3 bits), Expect = 2.3e-33, P = 2.3e-33
 Identities = 87/250 (34%), Positives = 146/250 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             L+  + +   +++  +AR+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P  
Sbjct:   151 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA- 209

Query:   159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
               I+  N +    RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q
Sbjct:   210 --IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 267

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             +R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++ 
Sbjct:   268 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 327

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
              +RQ++M+SAT P  +R L   +LK+ + ++ +G  +      I L  +    +++K E 
Sbjct:   328 PDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNI-LQIVDVCHDVEKDEK 385

Query:   335 ALFSLKQNVM 344
              L  L + +M
Sbjct:   386 -LIRLMEEIM 394


>UNIPROTKB|Q9KLH6 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
            family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
            N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 76/211 (36%), Positives = 128/211 (60%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S+L +   ++  L+  GI+   PIQ+  +   +QG+D++  A+TGTGKT AFG+P++
Sbjct:     6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query:   159 DKIIKFN-EKHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQM 215
              + I+   ++    +    LVL PTRELA+QV    + +     L  + VYGGT +  Q+
Sbjct:    66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L  GVD ++ TPGR++D     +L L +V+ +VLDEAD+ML +GF  D++ +L RL  
Sbjct:   126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              RQ++ FSAT    I+++  + +++P+ V +
Sbjct:   186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQV 216


>TIGR_CMR|GSU_0189 [details] [associations]
            symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
            ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
            PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
            Uniprot:Q74GQ7
        Length = 460

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 83/238 (34%), Positives = 136/238 (57%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             S L +   ++  LA  G +++ PIQ   L   + G+D+I RA+TG+GKT AFGI +L ++
Sbjct:     7 SSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRL 66

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPISHQMRAL 218
                + +         LVL PTRELA QV KE    A   D I    + GG P   Q+ +L
Sbjct:    67 DALSFR------VQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSL 120

Query:   219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             ++G   V+GTPGR++D ++R +L+LS ++ +VLDEAD+ML +GF +D+  ++   P  RQ
Sbjct:   121 EHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQ 180

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             +++FSAT P  I +++    + P+ V +     +   + +  Y + +   ++ VE  L
Sbjct:   181 TLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAIEQV-FYEVDSGQRIEAVERIL 237


>TIGR_CMR|VC_A0768 [details] [associations]
            symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
            OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
            DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
            ProtClustDB:CLSK869757 Uniprot:Q9KLH6
        Length = 422

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 76/211 (36%), Positives = 128/211 (60%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S+L +   ++  L+  GI+   PIQ+  +   +QG+D++  A+TGTGKT AFG+P++
Sbjct:     6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query:   159 DKIIKFN-EKHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQM 215
              + I+   ++    +    LVL PTRELA+QV    + +     L  + VYGGT +  Q+
Sbjct:    66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L  GVD ++ TPGR++D     +L L +V+ +VLDEAD+ML +GF  D++ +L RL  
Sbjct:   126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              RQ++ FSAT    I+++  + +++P+ V +
Sbjct:   186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQV 216


>UNIPROTKB|Q9KMW4 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 77/211 (36%), Positives = 124/211 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  + L +S  I+ A+  +G +   PIQ   +   + G+D++  A+TGTGKT  F +PIL
Sbjct:     1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
             + + K  +   R      L+L PTRELA Q++     +    P L +  V+GG  I+ QM
Sbjct:    61 ELLAKGPKV--RANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQM 117

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
             + +  G D +V TPGR++DL  +NA+   +++ +VLDEAD+ML +GF  D+  IL+ LP+
Sbjct:   118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              RQ+++FSAT    IR L    + NP+ + +
Sbjct:   178 KRQNLLFSATFSTEIRELAKGLVNNPVEISV 208


>TIGR_CMR|VC_A0204 [details] [associations]
            symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
            RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
            GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
            ProtClustDB:CLSK869561 Uniprot:Q9KMW4
        Length = 451

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 77/211 (36%), Positives = 124/211 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  + L +S  I+ A+  +G +   PIQ   +   + G+D++  A+TGTGKT  F +PIL
Sbjct:     1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
             + + K  +   R      L+L PTRELA Q++     +    P L +  V+GG  I+ QM
Sbjct:    61 ELLAKGPKV--RANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQM 117

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
             + +  G D +V TPGR++DL  +NA+   +++ +VLDEAD+ML +GF  D+  IL+ LP+
Sbjct:   118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              RQ+++FSAT    IR L    + NP+ + +
Sbjct:   178 KRQNLLFSATFSTEIRELAKGLVNNPVEISV 208


>UNIPROTKB|Q0C4B9 [details] [associations]
            symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
            RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
            GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
            BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
        Length = 536

 Score = 363 (132.8 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 80/225 (35%), Positives = 130/225 (57%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             ++++I+ A+   G +   PIQ+  +   + G D+ G A+TGTGKT AF +P++ ++   +
Sbjct:    11 LAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRL---S 67

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICVY-GGTPISHQMRALDYGVD 223
                 R R P CL+L PTRELA QV + F +    L  T+ +  GG     Q   L  GVD
Sbjct:    68 TGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVD 127

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
              ++ TPGR++D   R  L +  V+ +++DEAD+ML +GF  D+E I  +LP NRQ+++FS
Sbjct:   128 VLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFS 187

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             AT P  I+ L   + K+P  +++   +  + A+ IS + +    N
Sbjct:   188 ATFPTDIQRLAKTFQKDPKKIEVTRPA--QTAETISQFVVKLPTN 230


>POMBASE|SPBP8B7.16c [details] [associations]
            symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
            EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
            ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
            EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
            NextBio:20802492 Uniprot:P24782
        Length = 550

 Score = 364 (133.2 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 83/207 (40%), Positives = 126/207 (60%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH- 168
             ++  + + G     PIQ+     AM GRDM+G + TG+GKTL++ +P    I+  N +  
Sbjct:   133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA---IVHINAQPL 189

Query:   169 -GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDA 224
                G  P+ LVLAPTRELA Q+++E   F +S+   +T CVYGG P   Q+R L  GV+ 
Sbjct:   190 LSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT-CVYGGVPRGPQIRDLIRGVEI 248

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
              + TPGR++D++  N  NL  V ++VLDEAD+ML +GF   +  I++++  +RQ++MFSA
Sbjct:   249 CIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSA 308

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGDSD 311
             T P  ++ L   YL + + V  VG  D
Sbjct:   309 TWPKEVQRLARDYLNDYIQVT-VGSLD 334


>FB|FBgn0035720 [details] [associations]
            symbol:CG10077 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
            EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
            GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
            ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
            RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
            STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
            UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
        Length = 818

 Score = 371 (135.7 bits), Expect = 3.4e-33, P = 3.4e-33
 Identities = 78/200 (39%), Positives = 126/200 (63%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
             ++  + ++G +K   IQ      AM GRD++G A+TG+GKTLA+ +P +  I     +  
Sbjct:   168 VMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINN-QPRLE 226

Query:   170 RGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
             RG  P+ LVLAPTRELA+Q+++   EF  +    +T C++GG P   Q R L+ GV+ V+
Sbjct:   227 RGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNT-CIFGGAPKGQQARDLERGVEIVI 285

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
              TPGR+ID ++R   +L    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT 
Sbjct:   286 ATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATW 345

Query:   287 PPWIRSLTNKYLKNPLTVDL 306
             P  +R L  ++L N + V++
Sbjct:   346 PKEVRQLAEEFLNNYIQVNI 365


>TAIR|locus:2050715 [details] [associations]
            symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
            GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
            EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
            RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
            SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
            EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
            GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
            Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
        Length = 528

 Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
 Identities = 92/262 (35%), Positives = 144/262 (54%)

Query:    85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
             D+    +D +  +G +     + +D++  +  +G  K  PIQ+  +  A+ G D++ RA+
Sbjct:   140 DNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAK 199

Query:   145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSL--D 201
              GTGKT AF IP L+KI   N       N +  ++L PTRELA Q  +   E +  L  +
Sbjct:   200 NGTGKTGAFCIPTLEKIDPEN-------NVIQAVILVPTRELALQTSQVCKELSKYLKIE 252

Query:   202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
              +   GGT +   +  L   V  +VGTPGR++DL K+    L +   +V+DEAD++LSV 
Sbjct:   253 VMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVE 312

Query:   262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
             F   +E +++ LP++RQ +MFSAT P  ++S  ++YLK P  ++L+   DQ    G++ Y
Sbjct:   313 FQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLM---DQLTLMGVTQY 369

Query:   322 SIATSMNMQKVE--NALFSLKQ 341
               A     QKV   N LFS  Q
Sbjct:   370 -YAFVEERQKVHCLNTLFSKLQ 390


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 90/258 (34%), Positives = 144/258 (55%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S+L +S  +V  +A+ G  K   IQ   +   +QGRD+I  A+TGTGKT +F +PIL
Sbjct:     1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EK-EFHESAPSLDTICVYGGTPISHQMR 216
             +K+ +   +  R +    L+L PTRELA QV EK E +     L ++ V+GG     Q +
Sbjct:    61 EKLRQGQTQ--RKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD +V TPGR++DL  + A+   E++ VVLDEAD+ML +GF E +  I++ LP  
Sbjct:   119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
              Q ++FSAT+   +R L    +++P  + +  +   K    IS + I    +    ++AL
Sbjct:   179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASK--SNISQWLITVDKD---TKSAL 233

Query:   337 FSLKQNVMQTAWLMLWLK 354
              S   N  Q    +++++
Sbjct:   234 LSHLINEQQWDQALIFIE 251


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 90/258 (34%), Positives = 144/258 (55%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S+L +S  +V  +A+ G  K   IQ   +   +QGRD+I  A+TGTGKT +F +PIL
Sbjct:     1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EK-EFHESAPSLDTICVYGGTPISHQMR 216
             +K+ +   +  R +    L+L PTRELA QV EK E +     L ++ V+GG     Q +
Sbjct:    61 EKLRQGQTQ--RKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD +V TPGR++DL  + A+   E++ VVLDEAD+ML +GF E +  I++ LP  
Sbjct:   119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSE 178

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
              Q ++FSAT+   +R L    +++P  + +  +   K    IS + I    +    ++AL
Sbjct:   179 VQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASK--SNISQWLITVDKD---TKSAL 233

Query:   337 FSLKQNVMQTAWLMLWLK 354
              S   N  Q    +++++
Sbjct:   234 LSHLINEQQWDQALIFIE 251


>TAIR|locus:2084178 [details] [associations]
            symbol:DRH1 "DEAD box RNA helicase 1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
            InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
            PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
            SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
            EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
            EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
            PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
            RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
            ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
            PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
            EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
            KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
            OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
            Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
        Length = 619

 Score = 366 (133.9 bits), Expect = 4.4e-33, P = 4.4e-33
 Identities = 82/226 (36%), Positives = 131/226 (57%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++  +   G S   PIQ      AMQGRD++  A+TG+GKTL + IP    + +     
Sbjct:   168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDS 227

Query:   169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
               G  P  LVL+PTRELA Q+++E   F  S+  +   C+YGG P   Q+R L+ G D V
Sbjct:   228 RMG--PTILVLSPTRELATQIQEEAVKFGRSS-RISCTCLYGGAPKGPQLRDLERGADIV 284

Query:   226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
             V TPGR+ D+++   ++L ++ ++VLDEAD+ML +GF   +  I++ +P  RQ++M++AT
Sbjct:   285 VATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTAT 344

Query:   286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
              P  +R +    L NP  V+ +G+ D+ +A+      I     M+K
Sbjct:   345 WPKGVRKIAADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPMEK 389


>DICTYBASE|DDB_G0292992 [details] [associations]
            symbol:helA "putative RNA helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
            GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
            RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
            EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
            OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
        Length = 1091

 Score = 371 (135.7 bits), Expect = 6.3e-33, P = 6.3e-33
 Identities = 84/240 (35%), Positives = 142/240 (59%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             +D++++++ A+ ++G +   PIQ+  +   + G D++G ARTG+GKT AF IP++ K+  
Sbjct:   235 MDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKL-- 292

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQ---VEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
                 H        ++L+PTRELA Q   V K+F +    L TI + GG  +  Q   L  
Sbjct:   293 --GDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGT-QLRTILIVGGDSMEDQFTDLAR 349

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
               D ++ TPGR++  +    ++LS+VQ++V DEAD++  +GF E +  IL +L +NRQ++
Sbjct:   350 NPDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTL 409

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK 340
             +FSAT+P  +       L NP  ++L  D+D K+++ +SL S  T  + +K+   LF LK
Sbjct:   410 LFSATLPSLLVDFVRAGLNNPKLINL--DTDTKISENLSL-SFFTLRHEEKLGVLLFLLK 466


>UNIPROTKB|Q4K4K3 [details] [associations]
            symbol:dbpA "ATP-independent RNA helicase DbpA"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
            evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
            ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
            KEGG:pfl:PFL_5772 PATRIC:19881049
            BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
        Length = 461

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 87/236 (36%), Positives = 135/236 (57%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L +S  ++A L   G +++ PIQ   L   ++G D+I +A+TG+GKT AFGI +L+ I  
Sbjct:    11 LPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI-- 68

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRALDY 220
              N ++   +    LV+ PTRELA QV KE    A + D I V    GG     Q+ +L++
Sbjct:    69 -NPRYFGCQ---ALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEH 124

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   +VGTPGR+   +++ +L L  +  +VLDEAD+ML +GF + +E I+E+ P  RQ++
Sbjct:   125 GAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTL 184

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             +FSAT P  I+ L +K++++P TV      D    +    Y I+    M  V   L
Sbjct:   185 LFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQ-RFYEISPEERMSAVTKVL 239


>UNIPROTKB|Q8EJQ5 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 77/208 (37%), Positives = 123/208 (59%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L +  ++  ALA  G     PIQ   L   +Q +D+ G+A+TGTGKT+AF +   + ++ 
Sbjct:    14 LPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS 73

Query:   164 FNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
              +   GR  N P  +++APTRELA Q+ K+    A    L    VYGG     Q + LD 
Sbjct:    74 SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQ 133

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278
             GVD ++GT GR+ID +++  +NL+ +Q VVLDEAD+M  +GF +D+  +  R+P    R 
Sbjct:   134 GVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRL 193

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             +M+FSAT+   ++ L   ++ +P+ V++
Sbjct:   194 NMLFSATLSMKVQELAYDHMNDPVKVEI 221


>TIGR_CMR|SO_0407 [details] [associations]
            symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
            GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
            RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
            KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
        Length = 439

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 77/208 (37%), Positives = 123/208 (59%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L +  ++  ALA  G     PIQ   L   +Q +D+ G+A+TGTGKT+AF +   + ++ 
Sbjct:    14 LPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS 73

Query:   164 FNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDY 220
              +   GR  N P  +++APTRELA Q+ K+    A    L    VYGG     Q + LD 
Sbjct:    74 SSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQ 133

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278
             GVD ++GT GR+ID +++  +NL+ +Q VVLDEAD+M  +GF +D+  +  R+P    R 
Sbjct:   134 GVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRL 193

Query:   279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             +M+FSAT+   ++ L   ++ +P+ V++
Sbjct:   194 NMLFSATLSMKVQELAYDHMNDPVKVEI 221


>CGD|CAL0005460 [details] [associations]
            symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
            ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
            "RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
            EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
            ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
            GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
            Uniprot:Q5APT8
        Length = 564

 Score = 362 (132.5 bits), Expect = 7.0e-33, P = 7.0e-33
 Identities = 102/315 (32%), Positives = 166/315 (52%)

Query:    38 AKSGPVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDE 97
             ++S PV P  +D   S     + +  ++S+  D    ++    +  V+D      SS   
Sbjct:   100 SESSPVEPAANDSSSSTNYTQSSKLSSVSQS-DIDKFLS--DNEITVEDP---SSSSLRP 153

Query:    98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
              L   ++ ++  I + L++    K  PIQ       + G+D+IG A TG+GKT AFG+P 
Sbjct:   154 ILSFDQVQLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPA 211

Query:   158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS-LDTICVYGGTPISHQM 215
             ++ II      G  +    L ++PTRELA Q+     E +A S ++ + VYGG     Q+
Sbjct:   212 INNIITT----GNTKTLSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQI 267

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
             R +    + VV TPGR++DLI   A+NL +V ++VLDEAD+ML  GF ED++ I+     
Sbjct:   268 RKIKTA-NVVVATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSN 326

Query:   276 N-RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
             + RQ++MF+AT P  +R L N ++ +P+ V  VGD D+ L+    +  +   +N    E 
Sbjct:   327 SERQTLMFTATWPKEVRELANNFMNSPVKVT-VGDRDE-LSANKRITQVVEVINKFDKEK 384

Query:   335 ALFSL--KQNVMQTA 347
              L  L  K N  +++
Sbjct:   385 KLIQLLRKYNANESS 399


>UNIPROTKB|F1NM08 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003712 "transcription cofactor activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
            EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
            ArrayExpress:F1NM08 Uniprot:F1NM08
        Length = 595

 Score = 363 (132.8 bits), Expect = 7.7e-33, P = 7.7e-33
 Identities = 84/240 (35%), Positives = 141/240 (58%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++  + R+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P    I+  N + 
Sbjct:    92 NVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA---IVHINHQP 148

Query:   169 --GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDA 224
                RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q+R L+ GV+ 
Sbjct:   149 FLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEI 208

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
              + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+SA
Sbjct:   209 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 268

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVM 344
             T P  +R L   +LK  + ++ +G  +      I L  +    +++K ++ L  L + +M
Sbjct:   269 TWPKEVRQLAEDFLKEYVHIN-IGALELSANHNI-LQIVDVCHDVEK-DDKLIRLMEEIM 325


>UNIPROTKB|F1NXI3 [details] [associations]
            symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0003713 "transcription coactivator
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
            receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=IEA]
            [GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
            regulation of DNA damage response, signal transduction by p53 class
            mediator" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
            "regulation of androgen receptor signaling pathway" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
            mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
            GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
            GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
            GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
            ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
            ArrayExpress:F1NXI3 Uniprot:F1NXI3
        Length = 603

 Score = 363 (132.8 bits), Expect = 8.3e-33, P = 8.3e-33
 Identities = 84/240 (35%), Positives = 141/240 (58%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++  + R+  ++   IQ      A+ G DM+G A+TG+GKTL++ +P    I+  N + 
Sbjct:   100 NVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA---IVHINHQP 156

Query:   169 --GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDA 224
                RG  P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q+R L+ GV+ 
Sbjct:   157 FLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEI 216

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
              + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ++M+SA
Sbjct:   217 CIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 276

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVM 344
             T P  +R L   +LK  + ++ +G  +      I L  +    +++K ++ L  L + +M
Sbjct:   277 TWPKEVRQLAEDFLKEYVHIN-IGALELSANHNI-LQIVDVCHDVEK-DDKLIRLMEEIM 333


>POMBASE|SPAC1006.07 [details] [associations]
            symbol:SPAC1006.07 "translation initiation factor eIF4A
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
            "cytoplasmic translational initiation" evidence=NAS] [GO:0003743
            "translation initiation factor activity" evidence=ISO] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
            "ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
            "eukaryotic translation initiation factor 4F complex" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
            EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
            ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
            EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
            OMA:PILEMED NextBio:20803983 Uniprot:P47943
        Length = 392

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 90/258 (34%), Positives = 143/258 (55%)

Query:    92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +++ DE +D    +++  +++  +   G  +   IQ+  + P +  RD++ +A++GTGKT
Sbjct:    11 ETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKT 70

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
               F I +L KI   + K  +      L+LAPTRELA+Q++K        ++  C    GG
Sbjct:    71 ATFSISVLQKI-DTSLKQCQA-----LILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   M AL  GV  VVGTPGRV D+I+R AL    VQ  VLDEAD+MLS GF + +  
Sbjct:   125 TLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYD 184

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I + LP   Q ++ SATMP  +  +T K++++P+ + LV   D+   +GI  + +A    
Sbjct:   185 IFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI-LV-KKDELTLEGIKQFYVAVEKE 242

Query:   329 MQKVENALFSLKQNVMQT 346
               K++  L  L + V  T
Sbjct:   243 EWKLDT-LCDLYETVTVT 259


>DICTYBASE|DDB_G0275443 [details] [associations]
            symbol:helB1 "putative RNA splicing factor"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
            reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
            GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
            EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
            ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
            GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
            ProtClustDB:CLSZ2500419 Uniprot:Q553B1
        Length = 1151

 Score = 370 (135.3 bits), Expect = 8.9e-33, P = 8.9e-33
 Identities = 82/191 (42%), Positives = 113/191 (59%)

Query:   125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184
             IQ   +   M GRD+IG ARTG+GKTLAF +P+   I+    K   G   + L+++PTRE
Sbjct:   535 IQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILA-QPKSAPGEGMIALIMSPTRE 593

Query:   185 LAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI---KRN 239
             LA Q+  E  + +    L T CVYGG  IS Q+  L  G D VV TPGR+ID++    R 
Sbjct:   594 LALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRR 653

Query:   240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
               NL  V F+VLDEAD+M  +GF   +  I++ +  +RQ++MFSAT PP + ++  K L 
Sbjct:   654 ITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILN 713

Query:   300 NPLTVDLVGDS 310
              PL +   G S
Sbjct:   714 KPLEIIAGGRS 724


>ASPGD|ASPL0000006660 [details] [associations]
            symbol:AN5931 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
            EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
            ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
            EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
            OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
        Length = 563

 Score = 361 (132.1 bits), Expect = 9.0e-33, P = 9.0e-33
 Identities = 79/208 (37%), Positives = 123/208 (59%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
             Q +++ +  +G  K   IQ      A+ GRD++G A TG+GKTL++ +P    I+  N +
Sbjct:   149 QYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA---IVHINAQ 205

Query:   168 H--GRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
                  G  P+ L+LAPTRELA Q++ E  +   S  +   CVYGG P   Q+R L  GV+
Sbjct:   206 PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVE 265

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
               + TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ+ M+S
Sbjct:   266 VCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWS 325

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
             AT P  +R L + +L N + V+ +G  D
Sbjct:   326 ATWPKEVRQLASDFLNNYIQVN-IGSMD 352


>TAIR|locus:2098886 [details] [associations]
            symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
            EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
            PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
            UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
            PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
            EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
            GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
            PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
            GermOnline:AT3G61240 Uniprot:Q9M2E0
        Length = 498

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 89/255 (34%), Positives = 141/255 (55%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + +D++  +  +G  K  PIQ+  +  A+ G D++ RA+ GTGKT 
Sbjct:   117 DVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG 176

Query:   152 AFGIPILDKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGG 208
             AF IP+L+KI   N       N +  ++L PTRELA Q  +   E +  L+   +   GG
Sbjct:   177 AFCIPVLEKIDPNN-------NVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGG 229

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  L   V  +VGTPGR++DL K+    L +   +V+DEAD++LS  F   +E 
Sbjct:   230 TSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEE 289

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             +++ LPQNRQ +MFSAT P  +++  +++L+ P  ++L+   DQ    G++ Y  A    
Sbjct:   290 LIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLM---DQLTLMGVTQY-YAFVEE 345

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   346 RQKVHCLNTLFSKLQ 360


>SGD|S000005056 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
            protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
            "nuclear polyadenylation-dependent mRNA catabolic process"
            evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
            ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
            "rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
            OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
            RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
            SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
            STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
            GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
            CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
            Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
        Length = 546

 Score = 359 (131.4 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 84/207 (40%), Positives = 124/207 (59%)

Query:   118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPL 175
             G  K   IQ      A+ GRDM+G A TG+GKTL++ +P    I+  N +     G  P+
Sbjct:   132 GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLP---GIVHINAQPLLAPGDGPI 188

Query:   176 CLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
              LVLAPTRELA Q++ E   F  S+   +T CVYGG P S Q+R L  G + V+ TPGR+
Sbjct:   189 VLVLAPTRELAVQIQTECSKFGHSSRIRNT-CVYGGVPKSQQIRDLSRGSEIVIATPGRL 247

Query:   233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
             ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ++M+SAT P  ++ 
Sbjct:   248 IDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQ 307

Query:   293 LTNKYLKNPLTVDLVGDSDQKLADGIS 319
             L   YL +P+ V  VG  +   +  I+
Sbjct:   308 LAADYLNDPIQVQ-VGSLELSASHNIT 333


>ASPGD|ASPL0000036135 [details] [associations]
            symbol:AN10417 species:162425 "Emericella nidulans"
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
            cycle arrest in response to nitrogen starvation" evidence=IEA]
            [GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IEA]
            [GO:0000290 "deadenylation-dependent decapping of
            nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
            conjugation upon nitrogen starvation" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
            EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
        Length = 498

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 91/255 (35%), Positives = 140/255 (54%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +D +  +GL+     I ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGKT
Sbjct:    31 EDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKT 90

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGG 208
              AF IP L++I   N K  + +    L+L PTRELA Q           L  + +   GG
Sbjct:    91 AAFVIPTLERI---NPKSTKTQ---ALILVPTRELALQTSHVCKTLGKHLGINVMVTTGG 144

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  L+  V  +VGTPGRV+DL  +   +LSE    V+DEAD++LS  F   +E 
Sbjct:   145 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQ 204

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             +L   P++RQ M+FSAT P  ++S  +++++NP  ++L+   D+    GI+ Y  A    
Sbjct:   205 LLSFHPKDRQVMLFSATFPMIVKSFKDRHMRNPYEINLM---DELTLRGITQY-YAFVEE 260

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   261 KQKVHCLNTLFSKLQ 275


>UNIPROTKB|Q8EE19 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 82/260 (31%), Positives = 147/260 (56%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S+L +   +V A+   G     PIQ   +   + G++++  A+TGTGKT +F +P+L
Sbjct:     1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
              +    +    R +    ++L PTRELA QVE+  ++ A    L  + +YGG   + Q +
Sbjct:    61 HRFA--DAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKK 118

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD +V TPGR++D+  + A+   EV  +VLDEAD+ML +GF ED+  I+E+LP+ 
Sbjct:   119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ 178

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             RQ+++FSAT+   +++L    + + + +++     +K A    +    T+++  + ++AL
Sbjct:   179 RQNLLFSATLSKQVKALAKTAIPDAIEIEI----SRKNAASTQIDQWLTTVDKDR-KSAL 233

Query:   337 FS--LKQNVMQTAWLMLWLK 354
              S  +K+N    A + +  K
Sbjct:   234 LSHLIKENNWAQALIFIQTK 253


>TIGR_CMR|SO_2571 [details] [associations]
            symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
            HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
            GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
            ProtClustDB:CLSK906777 Uniprot:Q8EE19
        Length = 475

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 82/260 (31%), Positives = 147/260 (56%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S+L +   +V A+   G     PIQ   +   + G++++  A+TGTGKT +F +P+L
Sbjct:     1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
              +    +    R +    ++L PTRELA QVE+  ++ A    L  + +YGG   + Q +
Sbjct:    61 HRFA--DAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKK 118

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD +V TPGR++D+  + A+   EV  +VLDEAD+ML +GF ED+  I+E+LP+ 
Sbjct:   119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQ 178

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             RQ+++FSAT+   +++L    + + + +++     +K A    +    T+++  + ++AL
Sbjct:   179 RQNLLFSATLSKQVKALAKTAIPDAIEIEI----SRKNAASTQIDQWLTTVDKDR-KSAL 233

Query:   337 FS--LKQNVMQTAWLMLWLK 354
              S  +K+N    A + +  K
Sbjct:   234 LSHLIKENNWAQALIFIQTK 253


>TIGR_CMR|VC_2564 [details] [associations]
            symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
            KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
            OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
            DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
            Uniprot:Q9KP15
        Length = 460

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 78/211 (36%), Positives = 125/211 (59%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L++  +++A L   G + + PIQ   L   ++G+D+IG+ +TG+GKT AFG+ +L  +  
Sbjct:     9 LNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNL-- 66

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY---GGTPISHQMRALDY 220
              N K  R +    LVL PTRELA QV  +      ++  I V    GG P+  Q+ +L++
Sbjct:    67 -NVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   +VGTPGR++D + ++ ++LSE+  +VLDEAD+ML +GF E +E I+   P  RQ++
Sbjct:   123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
             +FSAT P  I  +     +N L + +    D
Sbjct:   183 LFSATYPASIEQIAQSVTRNALMIKVEATHD 213


>UNIPROTKB|I3LHW0 [details] [associations]
            symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
            Uniprot:I3LHW0
        Length = 621

 Score = 361 (132.1 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 85/219 (38%), Positives = 124/219 (56%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++ ++ + G  K  PIQ       +QG D+IG A+TGTGKTL++ +P    +       
Sbjct:   225 ELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSR 284

Query:   169 GRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
             G+   P  LVL PTRELA QV  E  + S   L ++C+YGG     Q++ +  GVD ++ 
Sbjct:   285 GKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIA 344

Query:   228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
             TPGR+ DL   N +NL  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M SAT P
Sbjct:   345 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWP 404

Query:   288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
               IR L + YLK P+ V  VG  D    D +    I T+
Sbjct:   405 DTIRQLAHSYLKEPMLV-YVGTLDLVAVDTVKQNIIITT 442


>UNIPROTKB|F1SQ03 [details] [associations]
            symbol:LOC100524536 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
            ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
            GeneID:100524536 Uniprot:F1SQ03
        Length = 630

 Score = 361 (132.1 bits), Expect = 1.7e-32, P = 1.7e-32
 Identities = 85/219 (38%), Positives = 124/219 (56%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++ ++ + G  K  PIQ       +QG D+IG A+TGTGKTL++ +P    +       
Sbjct:   234 ELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSR 293

Query:   169 GRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
             G+   P  LVL PTRELA QV  E  + S   L ++C+YGG     Q++ +  GVD ++ 
Sbjct:   294 GKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIA 353

Query:   228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
             TPGR+ DL   N +NL  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M SAT P
Sbjct:   354 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWP 413

Query:   288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
               IR L + YLK P+ V  VG  D    D +    I T+
Sbjct:   414 DTIRQLAHSYLKEPMLV-YVGTLDLVAVDTVKQNIIITT 451


>TAIR|locus:2076436 [details] [associations]
            symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
            EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
            RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
            SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
            EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
            GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
            ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
            Uniprot:Q9M2F9
        Length = 646

 Score = 361 (132.1 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 84/221 (38%), Positives = 132/221 (59%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             +++D+ + +   + R    K  P+Q+  +     GRD++  A+TG+GKT AF  PI+  I
Sbjct:   149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208

Query:   162 IK---FNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
             +K        G RG  PL ++L+PTRELA Q+  E  + +    +  +  YGGTP++ Q+
Sbjct:   209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQI 268

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-- 273
             R L+ GVD +V TPGR+ DL++R  ++L  V+F+ LDEAD+ML +GF   +  I++++  
Sbjct:   269 RELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDM 328

Query:   274 --PQNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDS 310
               P  RQ+M+FSAT P  I+ L + +L N   L V  VG S
Sbjct:   329 PPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSS 369


>ZFIN|ZDB-GENE-050208-665 [details] [associations]
            symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
            IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
            Uniprot:F1R8P9
        Length = 584

 Score = 359 (131.4 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 72/196 (36%), Positives = 123/196 (62%)

Query:   124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
             P+Q  ++   + GRD+I  A TG+GKT+AF +P++ + ++   +      P CL+L PTR
Sbjct:   195 PVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQ--SESASPSCPACLILTPTR 252

Query:   184 ELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
             ELA Q+E   KE     P++ T  + GG P+  Q+  L + +  V+GTPGR+++++K+ A
Sbjct:   253 ELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRLLEILKQKA 312

Query:   241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
             + L  V+ VV+DEAD ML +GF + V  ILE++P++ Q+++ SAT+P   + L  +   +
Sbjct:   313 VQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQQLAERLTHD 372

Query:   301 PLTVDLVGDSDQKLAD 316
             P+T+  +G  +Q  A+
Sbjct:   373 PVTIT-IGQKNQPCAN 387


>UNIPROTKB|F1NL04 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
            of protein localization" evidence=IEA] [GO:0033391 "chromatoid
            body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
            GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
            EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
            Ensembl:ENSGALT00000038830 Uniprot:F1NL04
        Length = 542

 Score = 356 (130.4 bits), Expect = 2.5e-32, P = 2.5e-32
 Identities = 80/247 (32%), Positives = 145/247 (58%)

Query:    81 QSAVDDYVAYDDSSKD-EGLD-------ISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
             QS ++ +  YD+ + +  GLD         + + +Q +   +++ G SKL P+QK  +  
Sbjct:   142 QSGIN-FDKYDECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPV 200

Query:   133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN---EKHGRGRNPLCLVLAPTRELAKQV 189
                GRD++  A+TG+GKT AF +PI+D+++K         + + P C+++APTREL  Q+
Sbjct:   201 IQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQI 260

Query:   190 EKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
               E  +      +  + +YGGT   H +R +  G + +  TPGR++D+I++  ++L EV+
Sbjct:   261 FLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVK 320

Query:   248 FVVLDEADQMLSVGFAEDVEVILE--RLPQN--RQSMMFSATMPPWIRSLTNKYLKNPLT 303
             ++VLDEAD+ML +GF  D++ ++    +P    RQ++MFSAT P  ++ L  ++LK    
Sbjct:   321 YLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYI 380

Query:   304 VDLVGDS 310
               ++G++
Sbjct:   381 FLVIGNT 387


>FB|FBgn0037573 [details] [associations]
            symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
            melanogaster" [GO:0016281 "eukaryotic translation initiation factor
            4F complex" evidence=ISS] [GO:0003743 "translation initiation
            factor activity" evidence=ISS] [GO:0006413 "translational
            initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
            oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
            DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
            GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
            GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
            EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
            STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
            InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
        Length = 399

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 87/262 (33%), Positives = 143/262 (54%)

Query:    75 IAWQHAQSAVDDYVAYDDSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPA 133
             +A ++AQ+     V ++ S   E +   + +++ ++++  +   G  K   IQ+  + P 
Sbjct:     1 MARKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPI 60

Query:   134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
             ++GRD+I +A++GTGKT  F I IL  +    +   R    LCL  +PTRELA Q++K  
Sbjct:    61 VKGRDVIAQAQSGTGKTATFSISILQSL----DTTLRETQVLCL--SPTRELAVQIQKVI 114

Query:   194 HESAPSLDTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
                   ++  C    GGT +   +R LDYG   V GTPGRV D+IKR  L    ++ +VL
Sbjct:   115 LALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVL 174

Query:   252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
             DEAD+ML+ GF E +  +   LP   Q ++ SAT+P  I  +T+K++ +P+ + LV   D
Sbjct:   175 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRI-LV-KRD 232

Query:   312 QKLADGISLYSIATSMNMQKVE 333
             +   +GI  + +A      K +
Sbjct:   233 ELTLEGIKQFFVAVEREEWKFD 254


>TAIR|locus:2041549 [details] [associations]
            symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
            EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
            UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
            PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
            KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
            OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
            GermOnline:AT2G42520 Uniprot:Q84W89
        Length = 633

 Score = 359 (131.4 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 86/256 (33%), Positives = 147/256 (57%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             +++D+ + +   + R    K  P+Q+  +   ++GRD++  A+TG+GKT AF  PI+  I
Sbjct:   162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221

Query:   162 IKFNE-KHGRGRN---PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
             +K    +  RG     PL ++L+PTRELA Q+  E  + +    +  +  YGGTPI+ Q+
Sbjct:   222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQL 281

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-- 273
             R L+ GVD +V TPGR+ DL++R  +++  ++F+ LDEAD+ML +GF   +  I+E++  
Sbjct:   282 RELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 341

Query:   274 -PQN-RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMNM 329
              P+  RQ+++FSAT P  I+ L   +L N   L V  VG S   +   +    +  S   
Sbjct:   342 PPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEF--VLDSDKR 399

Query:   330 QKVENALFSLKQNVMQ 345
               + + L + ++N +Q
Sbjct:   400 SHLMDLLHAQRENGIQ 415


>TAIR|locus:2057640 [details] [associations]
            symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
            RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
            SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
            EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
            GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
            ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
            Uniprot:P93008
        Length = 733

 Score = 292 (107.8 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 65/175 (37%), Positives = 102/175 (58%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             ++ +++ A+ R G  K  PIQ A +   +Q RD+IG A TG+GKT AF +P+L  I +  
Sbjct:   320 LTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLP 379

Query:   166 --EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
                +      P  +V+APTRELA+Q+E+E  + A  L      + GG  I  Q   +  G
Sbjct:   380 PMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439

Query:   222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              + V+ TPGR+ID ++R    L++  +VVLDEAD+M+ +GF   V  +L+ +P +
Sbjct:   440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSS 494

 Score = 95 (38.5 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 29/78 (37%), Positives = 40/78 (51%)

Query:   264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
             E+ E  L+     R + MFSATMPP +  L  KYL+NP+ V  +G +  K  D IS + I
Sbjct:   499 ENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVT-IGTAG-KTTDLISQHVI 556

Query:   324 ATSMNMQKVENALFSLKQ 341
                  M K     F L++
Sbjct:   557 -----MMKESEKFFRLQK 569


>TAIR|locus:2222617 [details] [associations]
            symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
            PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
            SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
            Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
            ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
            EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
            OMA:YLIPGFM Uniprot:F4K6V1
        Length = 712

 Score = 360 (131.8 bits), Expect = 3.5e-32, P = 3.5e-32
 Identities = 81/217 (37%), Positives = 128/217 (58%)

Query:   118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
             G S   PIQ      AMQ RD++  A+TG+GKTL + IP    + + +     G  P  L
Sbjct:   248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG--PTIL 305

Query:   178 VLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
             VL+PTRELA Q++ E   F +S+  +   C+YGG P   Q++ ++ GVD VV TPGR+ D
Sbjct:   306 VLSPTRELATQIQVEALKFGKSS-KISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364

Query:   235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
             +++   ++L +V ++VLDEAD+ML +GF   +  I+  +P  RQ++M++AT P  +R + 
Sbjct:   365 ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424

Query:   295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
                L NP  V+ +G+ D+ +A+     +I     M+K
Sbjct:   425 ADLLVNPAQVN-IGNVDELVANKSITQTIEVLAPMEK 460


>UNIPROTKB|F1N991 [details] [associations]
            symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
            meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
            [GO:0032880 "regulation of protein localization" evidence=IEA]
            [GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
            "perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
            GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
            OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
            IPI:IPI00819436 ProteinModelPortal:F1N991
            Ensembl:ENSGALT00000023724 Uniprot:F1N991
        Length = 568

 Score = 356 (130.4 bits), Expect = 3.5e-32, P = 3.5e-32
 Identities = 80/247 (32%), Positives = 145/247 (58%)

Query:    81 QSAVDDYVAYDDSSKD-EGLD-------ISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
             QS ++ +  YD+ + +  GLD         + + +Q +   +++ G SKL P+QK  +  
Sbjct:   142 QSGIN-FDKYDECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPV 200

Query:   133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN---EKHGRGRNPLCLVLAPTRELAKQV 189
                GRD++  A+TG+GKT AF +PI+D+++K         + + P C+++APTREL  Q+
Sbjct:   201 IQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQI 260

Query:   190 EKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
               E  +      +  + +YGGT   H +R +  G + +  TPGR++D+I++  ++L EV+
Sbjct:   261 FLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVK 320

Query:   248 FVVLDEADQMLSVGFAEDVEVILE--RLPQN--RQSMMFSATMPPWIRSLTNKYLKNPLT 303
             ++VLDEAD+ML +GF  D++ ++    +P    RQ++MFSAT P  ++ L  ++LK    
Sbjct:   321 YLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYI 380

Query:   304 VDLVGDS 310
               ++G++
Sbjct:   381 FLVIGNT 387


>UNIPROTKB|Q81JK1 [details] [associations]
            symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:1392 "Bacillus anthracis" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 73/207 (35%), Positives = 125/207 (60%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             S   +S+++  AL   G      +Q  V+  A+Q +D++ +++TG+GKT +FGIP+ + +
Sbjct:     7 SNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE-M 65

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
             +++ E       P  LVL PTRELA QV+++         +    +YG +P + Q   L 
Sbjct:    66 VEWEEN-----KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120

Query:   220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
                  VVGTPGRV+D I++  L+L  ++++V+DEAD+ML++GF + VE I++ LP  R +
Sbjct:   121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180

Query:   280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
             M+FSAT+P  +  L+  Y+  P  +++
Sbjct:   181 MLFSATLPEDVERLSRTYMNAPTHIEI 207


>TIGR_CMR|BA_5703 [details] [associations]
            symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
            InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
            RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
            SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
            EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
            EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
            GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
            ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
            BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
        Length = 481

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 73/207 (35%), Positives = 125/207 (60%)

Query:   102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
             S   +S+++  AL   G      +Q  V+  A+Q +D++ +++TG+GKT +FGIP+ + +
Sbjct:     7 SNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE-M 65

Query:   162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
             +++ E       P  LVL PTRELA QV+++         +    +YG +P + Q   L 
Sbjct:    66 VEWEEN-----KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120

Query:   220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
                  VVGTPGRV+D I++  L+L  ++++V+DEAD+ML++GF + VE I++ LP  R +
Sbjct:   121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180

Query:   280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
             M+FSAT+P  +  L+  Y+  P  +++
Sbjct:   181 MLFSATLPEDVERLSRTYMNAPTHIEI 207


>CGD|CAL0003050 [details] [associations]
            symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
            "ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
            "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
            InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
            RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
            GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
            Uniprot:Q5AK59
        Length = 565

 Score = 355 (130.0 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 91/259 (35%), Positives = 142/259 (54%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             DDSS+D  +     D S+  + A+   G +K+  +Q   + P + GRD++G A+TG+GKT
Sbjct:   102 DDSSED--VLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKT 159

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
             LAF IP ++ +     K   G     +++ PTRELA Q+     E        C  V GG
Sbjct:   160 LAFLIPAIELLYSLKIKPRNGT--AVIIITPTRELALQIFGVARELMQFHSQTCGIVIGG 217

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
                  +   L  GV+ +V TPGR++D +K      S ++ +V+DEAD++L +GF ++++ 
Sbjct:   218 ADRRQEATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQ 277

Query:   269 ILERLP-QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISL-YSIAT 325
             I++ LP +NRQSM+FSAT    +  L    L+  PL +++V + D   ADG+   Y +  
Sbjct:   278 IIKVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCD 337

Query:   326 SMNMQKVENALFS-LKQNV 343
             S    K    LFS LK+NV
Sbjct:   338 S---DKRFLLLFSFLKRNV 353


>UNIPROTKB|Q5AK59 [details] [associations]
            symbol:HAS1 "ATP-dependent RNA helicase HAS1"
            species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
            subunit biogenesis" evidence=IGI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
            EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
            STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
            KEGG:cal:CaO19.3962 Uniprot:Q5AK59
        Length = 565

 Score = 355 (130.0 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 91/259 (35%), Positives = 142/259 (54%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             DDSS+D  +     D S+  + A+   G +K+  +Q   + P + GRD++G A+TG+GKT
Sbjct:   102 DDSSED--VLFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKT 159

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
             LAF IP ++ +     K   G     +++ PTRELA Q+     E        C  V GG
Sbjct:   160 LAFLIPAIELLYSLKIKPRNGT--AVIIITPTRELALQIFGVARELMQFHSQTCGIVIGG 217

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
                  +   L  GV+ +V TPGR++D +K      S ++ +V+DEAD++L +GF ++++ 
Sbjct:   218 ADRRQEATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQ 277

Query:   269 ILERLP-QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISL-YSIAT 325
             I++ LP +NRQSM+FSAT    +  L    L+  PL +++V + D   ADG+   Y +  
Sbjct:   278 IIKVLPNENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCD 337

Query:   326 SMNMQKVENALFS-LKQNV 343
             S    K    LFS LK+NV
Sbjct:   338 S---DKRFLLLFSFLKRNV 353


>ASPGD|ASPL0000037981 [details] [associations]
            symbol:AN2932 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
            PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
            Uniprot:Q5B948
        Length = 398

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 88/258 (34%), Positives = 143/258 (55%)

Query:    92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +S+ DE  D    +++  +++  +   G  +   IQ+  + P ++G D+I +A++GTGKT
Sbjct:    17 ESNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKT 76

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
               F I  L K+   N K  +      L++APTRELA+Q++K        ++  C    GG
Sbjct:    77 ATFSISALQKLDP-NVKACQA-----LIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGG 130

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   M AL  G   VVGTPGR+ D+I+R  L   +++  +LDEAD+MLS GF E +  
Sbjct:   131 TAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYD 190

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I + LPQ+ Q ++ SATMP  +  +T K++++P+ + LV   +  L +GI  + IA    
Sbjct:   191 IFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRI-LVKKQELTL-EGIKQFYIAVEKE 248

Query:   329 MQKVENALFSLKQNVMQT 346
               K++  L  L + V  T
Sbjct:   249 EWKLDT-LSDLYETVTIT 265


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 355 (130.0 bits), Expect = 5.1e-32, P = 5.1e-32
 Identities = 89/260 (34%), Positives = 141/260 (54%)

Query:    65 ISRPLDFKSSIAWQHAQSAVDDYV-----AYDDSSKDEGLDISKLDISQDIVAALARRGI 119
             I++P    ++ +  + + A D Y+     ++ D    E L +  L   +  V+A  R G+
Sbjct:   124 IAQPAIGSANASNHNDEEAYDRYIKKHNISFADPKSSENL-LPILQFDELDVSAKLREGL 182

Query:   120 SKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
                    PIQ A     + GRD++G A TG+GKT+AFGIP L  +   ++       P  
Sbjct:   183 KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV---PRV 239

Query:   177 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
             LV++PTRELA Q  +  +      +L  + VYGG P S Q RA       ++GTPGR++D
Sbjct:   240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRLLD 298

Query:   235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-----NRQSMMFSATMPPW 289
             LI   +++ S+V ++VLDEAD+ML  GF +D+  I+   P      +RQ++ FSAT P  
Sbjct:   299 LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPES 358

Query:   290 IRSLTNKYLKNPLTVDLVGD 309
             +R+L   +LK+P+ + +  D
Sbjct:   359 VRALAATFLKDPVKITIGSD 378


>SGD|S000006040 [details] [associations]
            symbol:DBP1 "Putative ATP-dependent RNA helicase of the
            DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
            [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
            "translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
            helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
            "translation initiation factor activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
            SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
            STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
            KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
            HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
            NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
            Uniprot:P24784
        Length = 617

 Score = 356 (130.4 bits), Expect = 5.6e-32, P = 5.6e-32
 Identities = 95/256 (37%), Positives = 145/256 (56%)

Query:    86 DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
             D +  D S KD     LD S   + + ++  +     +K  P+QK  +    +GRD++  
Sbjct:   138 DNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197

Query:   143 ARTGTGKTLAFGIPILDKIIKFN-----EK----HGRGRNPLCLVLAPTRELAKQVEKEF 193
             A+TG+GKT  F  P+  ++ +       EK    + R   P  LVLAPTRELA Q+ +E 
Sbjct:   198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257

Query:   194 HE-SAPSLDTICV-YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
              + +  S    CV YGG PI +QMR +D G D +V TPGR+ DL++R  ++L+ ++++VL
Sbjct:   258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVL 317

Query:   252 DEADQMLSVGFAEDVEVILER--LP--QNRQSMMFSATMPPWIRSLTNKYLKNP--LTVD 305
             DEAD+ML +GF   +  I+E   +P  +NRQ++MFSAT P  I+ L   +L N   L+V 
Sbjct:   318 DEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVG 377

Query:   306 LVGDSDQKLADGISLY 321
              VG + + +   I LY
Sbjct:   378 RVGSTSENITQRI-LY 392


>ZFIN|ZDB-GENE-080204-77 [details] [associations]
            symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
            EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
            Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
        Length = 719

 Score = 358 (131.1 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 84/204 (41%), Positives = 120/204 (58%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
             I+  + R G  K  PIQ       + G D+IG A+TGTGKTLA+ +P    +        
Sbjct:   289 IMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRD 348

Query:   170 RGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGT 228
             +   P  LVL PTRELA Q+E E ++ S     +IC+YGG   + Q++ +  GVD V+ T
Sbjct:   349 KRNGPGMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGGDRNAQIKVVTSGVDIVIAT 408

Query:   229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV-EVILERLPQNRQSMMFSATMP 287
             PGR+ DL     +NL  + ++VLDEAD+ML +GF   + ++IL+  P +RQ++M SAT P
Sbjct:   409 PGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRP-DRQTVMTSATWP 467

Query:   288 PWIRSLTNKYLKNPLTVDLVGDSD 311
             P +R L   YLK+P+ V  VG  D
Sbjct:   468 PGVRRLAKSYLKDPMMV-YVGTLD 490


>UNIPROTKB|Q5ZM36 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
            GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
            RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
            SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
            InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
        Length = 412

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/233 (34%), Positives = 130/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F I +L  + I
Sbjct:    44 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 103

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:   104 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 156

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q +
Sbjct:   157 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 216

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   217 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 267


>UNIPROTKB|Q2NL22 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045727 "positive regulation of translation"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0017148 "negative regulation of translation"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
            GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
            GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
            GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
            GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
            IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
            ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
            Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
            InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
            Uniprot:Q2NL22
        Length = 411

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/233 (34%), Positives = 130/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F I +L  + I
Sbjct:    43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:   103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q +
Sbjct:   156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 266


>UNIPROTKB|E2RDZ4 [details] [associations]
            symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
            "negative regulation of translation" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
            EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
            GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
        Length = 411

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/233 (34%), Positives = 130/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F I +L  + I
Sbjct:    43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:   103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q +
Sbjct:   156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 266


>UNIPROTKB|P38919 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
            of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
            regulation of translation" evidence=IDA] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
            "cytokine-mediated signaling pathway" evidence=TAS]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
            GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
            GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
            PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
            PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
            OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
            EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
            EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
            UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
            SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
            STRING:P38919 PhosphoSite:P38919 DMDM:20532400
            REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
            PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
            KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
            HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
            InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
            EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
            CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
            Uniprot:P38919
        Length = 411

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/233 (34%), Positives = 130/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F I +L  + I
Sbjct:    43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:   103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q +
Sbjct:   156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 266


>UNIPROTKB|A6M931 [details] [associations]
            symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
            UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
            GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
        Length = 411

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/233 (34%), Positives = 130/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F I +L  + I
Sbjct:    43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:   103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q +
Sbjct:   156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 266


>RGD|1591139 [details] [associations]
            symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
            isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
            "positive regulation of translation" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
            EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
            IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
            ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
            KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
        Length = 411

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 80/233 (34%), Positives = 130/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F I +L  + I
Sbjct:    43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:   103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q +
Sbjct:   156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   216 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 266


>UNIPROTKB|F1NVJ6 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
            SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
            EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
            Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
        Length = 642

 Score = 356 (130.4 bits), Expect = 6.6e-32, P = 6.6e-32
 Identities = 92/236 (38%), Positives = 131/236 (55%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP-ILDKIIKFNEK 167
             DI+A + + G  K  PIQ       +QG D+IG A+TGTGKTLA+ +P  +    +   K
Sbjct:   250 DIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPK 309

Query:   168 HGRGRNPLCLVLAPTRELAKQVEKE-FHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
               RG  P  LVLAPTRELA QVE E    +     +IC+YGG     Q+  +  GVD V+
Sbjct:   310 DKRG-GPGMLVLAPTRELALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVI 368

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
              TPGR+ DL   N +NL  + ++  +EAD+ML +GF   +  IL  +  +RQ++M SAT 
Sbjct:   369 ATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMSATW 427

Query:   287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK--VENALFSLK 340
             P  +R L   YL+NP+ V  VG  D    + +    I  +   +K  +EN + S+K
Sbjct:   428 PDGVRRLAKSYLRNPMIV-YVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMK 482


>POMBASE|SPCC10H11.01 [details] [associations]
            symbol:prp11 "ATP-dependent RNA helicase Prp11"
            species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
            "spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
            RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
            IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
            GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
            NextBio:20800113 Uniprot:Q9P7C7
        Length = 1014

 Score = 350 (128.3 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
 Identities = 88/242 (36%), Positives = 129/242 (53%)

Query:    84 VDDYVAYDDSSKDEGLDI-------SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136
             VD+  A  D  K  G+D        S+  +S   ++ +   G  K   IQ   +     G
Sbjct:   396 VDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSG 455

Query:   137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
             RD+IG A+TG+GKT+AF +P+  + IK       G  P+ +++ PTRELA Q+   F E 
Sbjct:   456 RDVIGVAKTGSGKTIAFLLPMF-RHIKDQRPLKTGEGPIAIIMTPTRELAVQI---FREC 511

Query:   197 APSLDTI-----CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQF 248
              P L  +     C YGG PI  Q+  L  G + VV TPGR+ID++  NA    NL    +
Sbjct:   512 KPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTY 571

Query:   249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             +VLDEAD+M  +GF   V  I+  +  +RQ+++FSAT P  + +L  K LK P+ + + G
Sbjct:   572 LVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGG 631

Query:   309 DS 310
              S
Sbjct:   632 RS 633

 Score = 38 (18.4 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query:    86 DYVAYDDSSKDEG 98
             DY  YDDS   +G
Sbjct:    21 DYRKYDDSEDQKG 33


>UNIPROTKB|Q9NXZ2 [details] [associations]
            symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
            species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
            IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
            ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
            PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
            Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
            CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
            HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
            InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
            ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
            Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
            GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
        Length = 648

 Score = 356 (130.4 bits), Expect = 6.9e-32, P = 6.9e-32
 Identities = 85/219 (38%), Positives = 120/219 (54%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++  + + G  K  PIQ       +QG D+IG A+TGTGKTL + +P    ++      
Sbjct:   252 EVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLK 311

Query:   169 GRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
             G+   P  LVL PTRELA QVE E  + S   L ++CVYGG     Q+  L  GVD ++ 
Sbjct:   312 GQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIA 371

Query:   228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
             TPGR+ DL   N +NL  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M SAT P
Sbjct:   372 TPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWP 431

Query:   288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
               +  L   YLK P+ V  VG  D      +    I T+
Sbjct:   432 HSVHRLAQSYLKEPMIV-YVGTLDLVAVSSVKQNIIVTT 469


>CGD|CAL0006152 [details] [associations]
            symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
            in response to nitrogen starvation" evidence=IEA] [GO:0034063
            "stress granule assembly" evidence=IEA] [GO:0000753 "cell
            morphogenesis involved in conjugation with cellular fusion"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
            decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
            "induction of conjugation upon nitrogen starvation" evidence=IEA]
            [GO:0003724 "RNA helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
            RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
            GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
            KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
        Length = 549

 Score = 352 (129.0 bits), Expect = 7.9e-32, P = 7.9e-32
 Identities = 90/254 (35%), Positives = 136/254 (53%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +D    +G      ++ ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGKT
Sbjct:    22 EDVLNTKGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKT 81

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--GG 208
              +F IP L +++K   K  + +    L+L PTRELA Q  +        + T C+   GG
Sbjct:    82 ASFIIPCL-QLVK--PKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGG 135

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  L   V  +VGTPGRV+DL  R  ++LSE    V+DEAD+MLS  F   +E 
Sbjct:   136 TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQ 195

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSM 327
             ILE  P NRQ+++FSAT P  ++S  +K+L  P  ++L+   D+    GIS  Y+     
Sbjct:   196 ILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM---DELTLKGISQFYAFVEEK 252

Query:   328 NMQKVENALFSLKQ 341
                   N LFS  Q
Sbjct:   253 QKLHCLNTLFSKLQ 266


>UNIPROTKB|Q5AAW3 [details] [associations]
            symbol:DHH1 "ATP-dependent RNA helicase DHH1"
            species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
            SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
            KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
        Length = 549

 Score = 352 (129.0 bits), Expect = 7.9e-32, P = 7.9e-32
 Identities = 90/254 (35%), Positives = 136/254 (53%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +D    +G      ++ ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGKT
Sbjct:    22 EDVLNTKGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKT 81

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--GG 208
              +F IP L +++K   K  + +    L+L PTRELA Q  +        + T C+   GG
Sbjct:    82 ASFIIPCL-QLVK--PKLNKVQ---ALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGG 135

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  L   V  +VGTPGRV+DL  R  ++LSE    V+DEAD+MLS  F   +E 
Sbjct:   136 TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQ 195

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIATSM 327
             ILE  P NRQ+++FSAT P  ++S  +K+L  P  ++L+   D+    GIS  Y+     
Sbjct:   196 ILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM---DELTLKGISQFYAFVEEK 252

Query:   328 NMQKVENALFSLKQ 341
                   N LFS  Q
Sbjct:   253 QKLHCLNTLFSKLQ 266


>FB|FBgn0032690 [details] [associations]
            symbol:CG10333 species:7227 "Drosophila melanogaster"
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
            nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
            snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
            GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
            OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
            UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
            GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
            InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
        Length = 822

 Score = 299 (110.3 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
 Identities = 66/172 (38%), Positives = 103/172 (59%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD---KIIKF 164
             ++I+  + + G  +  PIQ+  +   +Q RD+IG A TG+GKTLAF IP+L     + K 
Sbjct:   403 KEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKI 462

Query:   165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGV 222
                    + P  +++APTRELA+Q+E+E  +    L   T+ V GG     Q   L  G 
Sbjct:   463 ERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC 522

Query:   223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             + V+ TPGR+ID+++   L L++  ++VLDEAD+M+ +GF  DV+ ILE +P
Sbjct:   523 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 574

 Score = 86 (35.3 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query:   263 AEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
             AED   ++E      + RQ++MF+ATMPP +  L   YL+ P TV
Sbjct:   585 AEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATV 629


>UNIPROTKB|Q48AV0 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 79/222 (35%), Positives = 124/222 (55%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S   +   ++ A+      +   IQK  +   +   D++ RA+TGTGKT AF +PIL
Sbjct:     5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-YGGTPISHQMR 216
              ++I         R    LVL PTRELA+QV K F       D TI + YGG     Q+ 
Sbjct:    65 QQLISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQIS 121

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD ++ TPGR++DL++  +++LS ++ +V DEAD+ML +GF E+++ I + LP+ 
Sbjct:   122 ELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
             +Q+++FSAT    I  ++   L  P  V++  D   K AD +
Sbjct:   182 KQTLLFSATFADDIYKMSKNILVEPKMVEI--DEKNKAADDV 221


>TIGR_CMR|CPS_0042 [details] [associations]
            symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
            family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
            GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
            BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
        Length = 420

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 79/222 (35%), Positives = 124/222 (55%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +  S   +   ++ A+      +   IQK  +   +   D++ RA+TGTGKT AF +PIL
Sbjct:     5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TICV-YGGTPISHQMR 216
              ++I         R    LVL PTRELA+QV K F       D TI + YGG     Q+ 
Sbjct:    65 QQLISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQIS 121

Query:   217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
              L  GVD ++ TPGR++DL++  +++LS ++ +V DEAD+ML +GF E+++ I + LP+ 
Sbjct:   122 ELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
             +Q+++FSAT    I  ++   L  P  V++  D   K AD +
Sbjct:   182 KQTLLFSATFADDIYKMSKNILVEPKMVEI--DEKNKAADDV 221


>ASPGD|ASPL0000055571 [details] [associations]
            symbol:AN1266 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
            EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
            RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
            EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
            Uniprot:Q5BDW4
        Length = 1173

 Score = 360 (131.8 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 87/218 (39%), Positives = 123/218 (56%)

Query:    98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
             GL I  LD+       + + G + L  IQ   +   M GRD+IG A+TG+GKT+AF IP+
Sbjct:   547 GLGIQTLDV-------IDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPM 599

Query:   158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
               + IK          P+ L++ PTRELA Q+ K+      A +L  +C YGG PI  Q+
Sbjct:   600 F-RHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI 658

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
               L  G + +V TPGR+IDL+  NA    NL  V +VVLDEAD+M  +GF   V  IL  
Sbjct:   659 AELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSN 718

Query:   273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             +  +RQ+++FSAT P  + +L  K L  P+ + + G S
Sbjct:   719 VRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRS 756


>DICTYBASE|DDB_G0293168 [details] [associations]
            symbol:ddx17 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
            activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
            RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
            PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
            KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
        Length = 785

 Score = 356 (130.4 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 77/192 (40%), Positives = 120/192 (62%)

Query:   124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAP 181
             PIQ      A++GRD+IG A+TG+GKTLAF +P    I+  N +        P+ LVLAP
Sbjct:   409 PIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLP---SIVHINAQPVLREDDGPIVLVLAP 465

Query:   182 TRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
             TRELA Q+++E ++      +   CVYGG     Q+ AL  GV+ V+ TPGR+ID+++  
Sbjct:   466 TRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESG 525

Query:   240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
               NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ++MFSAT P  +++L + +L 
Sbjct:   526 KTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLT 585

Query:   300 NPLTVDLVGDSD 311
             + + V  +G ++
Sbjct:   586 DHIQVH-IGSTE 596


>FB|FBgn0003261 [details] [associations]
            symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
            evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
            chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
            GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
            GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
            EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
            RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
            RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
            RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
            ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
            MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
            EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
            CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
            OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
            Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
        Length = 719

 Score = 355 (130.0 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 79/212 (37%), Positives = 125/212 (58%)

Query:   100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
             D S++ +   ++  + R+G      IQ      AM G + +G A+TG+GKTL +   IL 
Sbjct:   282 DFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGY---ILP 338

Query:   160 KIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQ 214
              I+  N +    RG  P+ LVLAPTRELA+Q+++   EF  S+   +T CV+GG P   Q
Sbjct:   339 AIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNT-CVFGGAPKGGQ 397

Query:   215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             MR L  G + V+ TPGR+ID +   + NL    ++VLDEAD+ML +GF   +  I+ ++ 
Sbjct:   398 MRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 457

Query:   275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
              +RQ++M+SAT P  ++ L   +L N + +++
Sbjct:   458 PDRQTLMWSATWPKEVKQLAEDFLGNYIQINI 489


>TAIR|locus:2127043 [details] [associations]
            symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
            "virus-host interaction" evidence=IPI] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
            GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
            GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
            ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
            IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
            RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
            UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
            PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
            EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
            GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
            Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
        Length = 505

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 87/264 (32%), Positives = 142/264 (53%)

Query:    83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
             A D     +D +  +G +     + ++++  +  +G  +  PIQ+  +  A+ GRD++ R
Sbjct:   115 APDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILAR 174

Query:   143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSL- 200
             A+ GTGKT AF IP+L+KI + N       N +  +++ PTRELA Q  +   E    L 
Sbjct:   175 AKNGTGKTAAFCIPVLEKIDQDN-------NVIQAVIIVPTRELALQTSQVCKELGKHLK 227

Query:   201 -DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
                +   GGT +   +  L   V  +VGTPGR++DL K+    L +   +V+DEAD++LS
Sbjct:   228 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLS 287

Query:   260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
               F   VE ++  LP++RQ +MFSAT P  ++   +++L NP  ++L+   D+    GI+
Sbjct:   288 QEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLM---DELTLKGIT 344

Query:   320 LYSIATSMNMQKVE--NALFSLKQ 341
              +  A     QK+   N LFS  Q
Sbjct:   345 QF-YAFVEERQKIHCLNTLFSKLQ 367


>CGD|CAL0003464 [details] [associations]
            symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
            EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
            RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
            KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
        Length = 908

 Score = 357 (130.7 bits), Expect = 1.4e-31, P = 1.4e-31
 Identities = 84/264 (31%), Positives = 149/264 (56%)

Query:    82 SAVDDYVAYDD--SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
             S ++ Y   ++  + K +    +   +++ I+A +A++G  +  PIQ+  +   M+GRD+
Sbjct:    80 SKINSYFINNNPTAKKAKAGSFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDV 139

Query:   140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-- 197
             +G ARTG+GKT AF +P+++++ K  +  G       ++L+P+RELA Q  K+  E +  
Sbjct:   140 VGMARTGSGKTAAFVLPLIERL-KSRQPGG----VRAVILSPSRELALQTYKQVKEFSHG 194

Query:   198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
              +L +I + GG  +      +    D +V TPGR + L      +L  VQ++V DEAD++
Sbjct:   195 TNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYDLMTVQYIVFDEADRL 254

Query:   258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
               +GFAE +  +L  LP NRQS++FSAT+P  +       L NP+ V L  D++ K++D 
Sbjct:   255 FEMGFAEQLNELLASLPSNRQSLLFSATLPRSLVDFAKAGLTNPVLVRL--DAESKISDQ 312

Query:   318 ISLYSIATSMNMQKVENALFSLKQ 341
             + +    T  N ++  N L+ L++
Sbjct:   313 LQMAYFTTKKN-EREANLLYILQE 335


>UNIPROTKB|Q91372 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
            "mitochondrial cloud" evidence=IDA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
            GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
            GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
            UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
            KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
        Length = 700

 Score = 354 (129.7 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 95/297 (31%), Positives = 168/297 (56%)

Query:    68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
             P D + +I  Q+ QS ++    D +  D + KD     L   + ++ + +   +AR G  
Sbjct:   237 PPDGEDNIFRQY-QSGINFDKYDEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYV 295

Query:   121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN---EKHGRGRNPLCL 177
             KL P+QK  +   M GRD++  A+TG+GKT AF +PIL  ++       ++ + + P  +
Sbjct:   296 KLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAI 355

Query:   178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
             ++APTREL  Q+  +  + +    +  + VYGG    H MR ++ G + +  TPGR++D+
Sbjct:   356 IIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDI 415

Query:   236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LP--QNRQSMMFSATMPPWIR 291
             + +  + LS+++++VLDEAD+ML +GFA ++E ++ +  +P  + RQ++MFSAT P  IR
Sbjct:   416 VSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIR 475

Query:   292 SLTNKYLKNP---LTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL-KQNVM 344
              L + YLK+    + V LVG +   +A   ++  +  +  M+K+   L S  K+  M
Sbjct:   476 RLASNYLKSEHLFVVVGLVGGACSDVAQ--TVLEMRENGKMEKLLEILKSSEKERTM 530


>FB|FBgn0029979 [details] [associations]
            symbol:CG10777 species:7227 "Drosophila melanogaster"
            [GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
            GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
            RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
            MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
            KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
            InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
            NextBio:774939 Uniprot:Q9W3M7
        Length = 945

 Score = 357 (130.7 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 74/201 (36%), Positives = 124/201 (61%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
             ++  + R+G +K   IQ      A+ GRD++G A+TG+GKTLA+ +P +  I        
Sbjct:   248 VIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGN-QPPII 306

Query:   170 RGRNPLCLVLAPTRELAKQVE---KEF-HESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
             RG  P+ LVLAPTRELA+Q++   +++ H   P +   C++GG+    Q R LD GV+ +
Sbjct:   307 RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVI 366

Query:   226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
             + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I+E++  +RQ +M+SAT
Sbjct:   367 IATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSAT 426

Query:   286 MPPWIRSLTNKYLKNPLTVDL 306
              P  +++L   +L + + +++
Sbjct:   427 WPKEVQALAGDFLNDYIQINI 447


>WB|WBGene00010260 [details] [associations]
            symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
            GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
            RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
            STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
            EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
            EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
            KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
            WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
            ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
        Length = 561

 Score = 350 (128.3 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 82/215 (38%), Positives = 126/215 (58%)

Query:   133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK- 191
             AM GRD+I  A+TG+GKTLAF +P L  I K   +  RG  P  LVL PTRELA+QV++ 
Sbjct:   163 AMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQ-RGEGPAVLVLLPTRELAQQVQEV 221

Query:   192 --EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
               +F  S   L   C++GG     Q R L+ GVD VV TPGR++D +     N+ +  ++
Sbjct:   222 SIDFCHSL-GLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYL 280

Query:   250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
             VLDEAD+ML +GF   ++ I+ ++  +RQ++MFSAT P  +R+L + + K+   ++ VG 
Sbjct:   281 VLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLN-VGS 339

Query:   310 SDQKLADGISLYSIATSMNMQKVENALFSLKQNVM 344
              +  LA   ++  +   +     +  L  L  ++M
Sbjct:   340 LE--LAANHNITQVVDILEEHAKQAKLMELLNHIM 372


>RGD|1308685 [details] [associations]
            symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
            evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
            [GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
            GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
            RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
            GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
        Length = 819

 Score = 299 (110.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 70/174 (40%), Positives = 102/174 (58%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII---KFNE 166
             I+  + + G  +  PIQ+  +   +Q RD+IG A TG+GKT AF IP+L  I    K + 
Sbjct:   401 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 460

Query:   167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDA 224
                  + P  ++LAPTRELA+Q+E+E  +    L   T+ V GG     Q   L  G + 
Sbjct:   461 IEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 520

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             V+ TPGR+ID+++   L LS   +VVLDEAD+M+ +GF  DV+ ILE +P + Q
Sbjct:   521 VIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 574

 Score = 83 (34.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query:   263 AEDVEVILERLPQN----RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLAD 316
             AED E +L          RQ++MF+ATMPP +  L   YL+ P  V +   G   +++  
Sbjct:   581 AEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ 640

Query:   317 GISLYS 322
              + L S
Sbjct:   641 KVFLMS 646


>UNIPROTKB|A6QLB2 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
            HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
            EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
            UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
            GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
            Uniprot:A6QLB2
        Length = 820

 Score = 299 (110.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 70/174 (40%), Positives = 102/174 (58%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII---KFNE 166
             I+  + + G  +  PIQ+  +   +Q RD+IG A TG+GKT AF IP+L  I    K + 
Sbjct:   402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 461

Query:   167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDA 224
                  + P  ++LAPTRELA+Q+E+E  +    L   T+ V GG     Q   L  G + 
Sbjct:   462 IEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             V+ TPGR+ID+++   L LS   +VVLDEAD+M+ +GF  DV+ ILE +P + Q
Sbjct:   522 VIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

 Score = 83 (34.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query:   263 AEDVEVILERLPQN----RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLAD 316
             AED E +L          RQ++MF+ATMPP +  L   YL+ P  V +   G   +++  
Sbjct:   582 AEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ 641

Query:   317 GISLYS 322
              + L S
Sbjct:   642 KVFLMS 647


>UNIPROTKB|E2RTL6 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
            GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
            RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
            Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
            NextBio:20853071 Uniprot:E2RTL6
        Length = 820

 Score = 299 (110.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 70/174 (40%), Positives = 102/174 (58%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII---KFNE 166
             I+  + + G  +  PIQ+  +   +Q RD+IG A TG+GKT AF IP+L  I    K + 
Sbjct:   402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 461

Query:   167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDA 224
                  + P  ++LAPTRELA+Q+E+E  +    L   T+ V GG     Q   L  G + 
Sbjct:   462 IEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             V+ TPGR+ID+++   L LS   +VVLDEAD+M+ +GF  DV+ ILE +P + Q
Sbjct:   522 VIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

 Score = 83 (34.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query:   263 AEDVEVILERLPQN----RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLAD 316
             AED E +L          RQ++MF+ATMPP +  L   YL+ P  V +   G   +++  
Sbjct:   582 AEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ 641

Query:   317 GISLYS 322
              + L S
Sbjct:   642 KVFLMS 647


>UNIPROTKB|Q9BUQ8 [details] [associations]
            symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
            "RNA splicing, via transesterification reactions" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
            "cis assembly of pre-catalytic spliceosome" evidence=IC]
            [GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
            GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
            KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
            RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
            SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
            STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
            PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
            KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
            HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
            PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
            InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
            GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
            CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
            Uniprot:Q9BUQ8
        Length = 820

 Score = 299 (110.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 70/174 (40%), Positives = 102/174 (58%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII---KFNE 166
             I+  + + G  +  PIQ+  +   +Q RD+IG A TG+GKT AF IP+L  I    K + 
Sbjct:   402 ILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 461

Query:   167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDA 224
                  + P  ++LAPTRELA+Q+E+E  +    L   T+ V GG     Q   L  G + 
Sbjct:   462 IEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             V+ TPGR+ID+++   L LS   +VVLDEAD+M+ +GF  DV+ ILE +P + Q
Sbjct:   522 VIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

 Score = 83 (34.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 22/66 (33%), Positives = 33/66 (50%)

Query:   263 AEDVEVILERLPQN----RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLAD 316
             AED E +L          RQ++MF+ATMPP +  L   YL+ P  V +   G   +++  
Sbjct:   582 AEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ 641

Query:   317 GISLYS 322
              + L S
Sbjct:   642 KVFLMS 647


>MGI|MGI:1915247 [details] [associations]
            symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
            GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
            EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
            RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
            ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
            PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
            UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
            ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
            Genevestigator:Q9DBN9 Uniprot:Q9DBN9
        Length = 619

 Score = 351 (128.6 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 78/216 (36%), Positives = 127/216 (58%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +D       + +   L + G     PIQ  ++   + GRD++  A TG+GKT AF +P++
Sbjct:   203 IDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
               I  F+E     + P  L+L PTRELA Q+E   KE     P + T+ + GG P+  Q+
Sbjct:   263 --IRAFSED----KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L   V  ++ TPGR++D+IK+++++LS ++ VV+DEAD ML +GF + V  +LE  P 
Sbjct:   317 YRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPG 376

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
             + Q+++ SAT+P  I  LT++ L NP+ + + GD +
Sbjct:   377 DCQTILVSATIPDSIEQLTDQLLHNPVRI-ITGDKN 411


>WB|WBGene00022029 [details] [associations]
            symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0018996 "molting cycle, collagen and
            cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
            GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
            GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
            RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
            STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
            KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
            InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
        Length = 399

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 83/257 (32%), Positives = 137/257 (53%)

Query:    85 DDYVAYD-DSSKDEGL--DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
             DD    + +SS++  +     K+ + +D++  +   G  K   IQ+  +   ++ RD+I 
Sbjct:     9 DDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIA 68

Query:   142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
             +A++GTGKT  F I +L  +        + R    L+L+PTRELA Q++K        ++
Sbjct:    69 QAQSGTGKTATFSISVLQSL------DTQVRETQALILSPTRELAVQIQKVVLALGDYMN 122

Query:   202 TIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
               C    GGT +   +R LDYG   V GTPGRV D+I+R  L    ++ +VLDEAD+ML+
Sbjct:   123 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLN 182

Query:   260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
              GF E +  I   LP   Q ++ SAT+P  I  +T+K++ +P+ + LV   D+   +GI 
Sbjct:   183 KGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRI-LV-KRDELTLEGIK 240

Query:   320 LYSIATSMNMQKVENAL 336
              + +A      K +  +
Sbjct:   241 QFFVAVDREEWKFDTLI 257


>TAIR|locus:2081061 [details] [associations]
            symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
            SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
            UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
            PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
            KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
            HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
            ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
            Uniprot:Q9SQV1
        Length = 1088

 Score = 356 (130.4 bits), Expect = 2.5e-31, P = 2.5e-31
 Identities = 83/236 (35%), Positives = 134/236 (56%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +I+  L   G     PIQ      A+Q RD++  A+TG+GKTL + IP    I+  + ++
Sbjct:   445 EILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF--ILLRHCRN 502

Query:   169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
                  P  L+LAPTRELA Q++ E   F  S+  +   C+YGG P   Q++ L+ G D V
Sbjct:   503 DSRNGPTVLILAPTRELATQIQDEALRFGRSS-RISCTCLYGGAPKGPQLKELERGADIV 561

Query:   226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
             V TPGR+ D+++   ++  +V  +VLDEAD+ML +GF   +  I+  +P  RQ++M++AT
Sbjct:   562 VATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTAT 621

Query:   286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GISLY-SIATSMNMQK-VENALFS 338
              P  +R + +  L NP+ V+ +G  D+  A+  I+ Y  +   M  ++ +E  L S
Sbjct:   622 WPKEVRKIASDLLVNPVQVN-IGRVDELAANKAITQYVEVVPQMEKERRLEQILRS 676


>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
            symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
            GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
            CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
            EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
            RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
            Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
            InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
        Length = 807

 Score = 296 (109.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 70/174 (40%), Positives = 100/174 (57%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII---KFNE 166
             I+  + + G     PIQ+  +   +Q RD+IG A TG+GKT AF IP+L  I    K + 
Sbjct:   389 ILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDR 448

Query:   167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDA 224
                  + P  ++LAPTRELA+Q+E+E  +    L   T+ V GG     Q   L  G + 
Sbjct:   449 IEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 508

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
             V+ TPGR+ID+++   L LS   +VVLDEAD+M+ +GF  DV+ ILE +P   Q
Sbjct:   509 VIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQ 562

 Score = 84 (34.6 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query:   263 AEDVEVILERLPQN----RQSMMFSATMPPWIRSLTNKYLKNPLTVDL--VGDSDQKLAD 316
             AED E +++         RQ++MF+ATMPP +  L   YL+ P  V +   G   +++  
Sbjct:   569 AEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQ 628

Query:   317 GISLYS 322
              + L S
Sbjct:   629 KVILMS 634


>ZFIN|ZDB-GENE-040426-915 [details] [associations]
            symbol:eif4a3 "eukaryotic translation initiation
            factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
            GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
            GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
            OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
            UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
            PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
            NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
        Length = 406

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 79/233 (33%), Positives = 129/233 (55%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
             + + +D++  +   G  K   IQ+  ++  ++GRD+I ++++GTGKT  F + +L  + I
Sbjct:    38 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI 97

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
             +  E          L+LAPTRELA Q++K        ++  C    GGT +   +R LDY
Sbjct:    98 QVRETQA-------LILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDY 150

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R +L    ++ +VLDEAD+ML+ GF E +  +   LP   Q  
Sbjct:   151 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVC 210

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  I  +TNK++ +P+ + LV   D+   +GI  + +A      K +
Sbjct:   211 LISATLPHEILEMTNKFMTDPIRI-LV-KRDELTLEGIKQFFVAVEREEWKFD 261


>TAIR|locus:2074899 [details] [associations]
            symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
            RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
            SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
            GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
            GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
            PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
            GermOnline:AT3G09620 Uniprot:Q9SF41
        Length = 989

 Score = 355 (130.0 bits), Expect = 2.7e-31, P = 2.7e-31
 Identities = 79/210 (37%), Positives = 124/210 (59%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             ++  I+  L +    K  PIQ   L   M GRD IG A+TG+GKTL F +P+L + IK  
Sbjct:   403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPML-RHIKDQ 461

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV--YGGTPISHQMRALDYGVD 223
                  G  P+ LV+APTREL +Q+  +  + + +L  ICV  YGG+ ++ Q+  L  G +
Sbjct:   462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              VV TPGR+ID++  ++    NL  V ++V+DEAD+M  +GF   +  I++ +  +RQ++
Sbjct:   522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             +FSAT P  + +L  K L  P+ + + G S
Sbjct:   582 LFSATFPRQVETLARKVLNKPVEIQVGGRS 611


>FB|FBgn0036104 [details] [associations]
            symbol:CG6418 species:7227 "Drosophila melanogaster"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
            GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
            UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
            STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
            KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
            InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
            NextBio:812543 Uniprot:Q9VTC1
        Length = 791

 Score = 353 (129.3 bits), Expect = 2.7e-31, P = 2.7e-31
 Identities = 81/212 (38%), Positives = 124/212 (58%)

Query:   108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE- 166
             + ++ A+ +   ++  PIQ   +  A+ GRD+IG A+TG+GKT AF  P+L  ++   + 
Sbjct:   278 EQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQL 337

Query:   167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDA 224
             K G G  P+ L+LAPTREL+ Q+  E  +     +L+ +C YGG     Q +AL+ G + 
Sbjct:   338 KPGDG--PIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEI 395

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
             +V TPGR+ID++K  A NL  V F+VLDEAD+M  +GF   V  I   +  +RQ +MFSA
Sbjct:   396 IVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSA 455

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
             T    I  L    L +P+ + + GD ++   D
Sbjct:   456 TFKKRIERLARDVLSDPVRI-VQGDLNEANQD 486


>UNIPROTKB|A4RN46 [details] [associations]
            symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
            PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
            "mycelium development" evidence=IEP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
            ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
            KEGG:mgr:MGG_15532 Uniprot:A4RN46
        Length = 1012

 Score = 355 (130.0 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 87/229 (37%), Positives = 128/229 (55%)

Query:    93 SSKDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
             S KD    + K  +   ++ I+  +A+    K   IQ   L   M GRD++G A+TG+GK
Sbjct:   369 SGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGK 428

Query:   150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-----IC 204
             T+AF +P+  + IK  E       P+ L+L PTRELA Q+   F +  P L T     +C
Sbjct:   429 TMAFLLPMF-RHIKDQEPVKDNEGPIGLILTPTRELAVQI---FRDCKPFLKTLGLRAVC 484

Query:   205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVG 261
              YGG PI  Q+  L  G + VV T GR+IDL+  N    ++L    ++VLDEAD+M  +G
Sbjct:   485 AYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMG 544

Query:   262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             F   V  I   +  +RQ+++FSATMP  + +L  K LKNP+ +++ G S
Sbjct:   545 FEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKS 593


>UNIPROTKB|Q9KV52 [details] [associations]
            symbol:rhlB "ATP-dependent RNA helicase RhlB"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 75/213 (35%), Positives = 120/213 (56%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             +   ++  L ++G     PIQ   L   + G+D+ G+A+TGTGKTLAF     + ++   
Sbjct:    16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query:   166 EKHGRGRN-PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGV 222
                GR    P  +++APTRELA Q+  +     ++  L     YGG     Q+  L  GV
Sbjct:    76 AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135

Query:   223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSM 280
             D ++GT GR+ID  K+   NL+ +Q VVLDEAD+M  +GF +D+  +  R+P+  +R +M
Sbjct:   136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
             +FSAT+   ++ L  +++ NP  V  V + +QK
Sbjct:   196 LFSATLSYRVQELAFEHMNNPEHV--VVEPEQK 226


>TIGR_CMR|VC_0305 [details] [associations]
            symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
            KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
            ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
            KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
        Length = 438

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 75/213 (35%), Positives = 120/213 (56%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             +   ++  L ++G     PIQ   L   + G+D+ G+A+TGTGKTLAF     + ++   
Sbjct:    16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query:   166 EKHGRGRN-PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGV 222
                GR    P  +++APTRELA Q+  +     ++  L     YGG     Q+  L  GV
Sbjct:    76 AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135

Query:   223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSM 280
             D ++GT GR+ID  K+   NL+ +Q VVLDEAD+M  +GF +D+  +  R+P+  +R +M
Sbjct:   136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
             +FSAT+   ++ L  +++ NP  V  V + +QK
Sbjct:   196 LFSATLSYRVQELAFEHMNNPEHV--VVEPEQK 226


>WB|WBGene00018007 [details] [associations]
            symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
            "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0018996 "molting
            cycle, collagen and cuticulin-based cuticle" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
            GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
            EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
            ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
            MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
            EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
            KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
            WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
        Length = 399

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 83/257 (32%), Positives = 137/257 (53%)

Query:    85 DDYVAYD-DSSKDEGL--DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
             DD    + +SS++  +     K+ + +D++  +   G  K   IQ+  +   ++ RD+I 
Sbjct:     9 DDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIA 68

Query:   142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
             +A++GTGKT  F I +L  +        + R    L+L+PTRELA Q++K        ++
Sbjct:    69 QAQSGTGKTATFSISVLQSL------DTQVRETQALILSPTRELAVQIQKVVLALGDYMN 122

Query:   202 TIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
               C    GGT +   +R LDYG   V GTPGRV D+I+R  L    ++ +VLDEAD+ML+
Sbjct:   123 VQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLN 182

Query:   260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
              GF E +  I   LP   Q ++ SAT+P  I  +T+K++ +P+ + LV   D+   +GI 
Sbjct:   183 KGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRI-LV-KRDELTLEGIK 240

Query:   320 LYSIATSMNMQKVENAL 336
              + +A      K +  +
Sbjct:   241 QFFVAVDREEWKFDTLI 257


>ASPGD|ASPL0000051195 [details] [associations]
            symbol:AN1634 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
            GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
            HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
            ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
            GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
        Length = 782

 Score = 301 (111.0 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
 Identities = 70/166 (42%), Positives = 102/166 (61%)

Query:   116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII---KFNEKHGRGR 172
             R G  +  PIQ+A +  AMQ RD+IG A TG+GKT AF +P+L  I    + +E   R  
Sbjct:   363 RVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKN 422

Query:   173 N-PLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGT 228
             + P  +VLAPTRELA+Q+E   K+F E     + + + GG     Q  +L  G + ++ T
Sbjct:   423 DGPYAIVLAPTRELAQQIEIEAKKFTEPL-GFNVVSIVGGHSFEEQAYSLRNGAEIIIAT 481

Query:   229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
             PGR++D I+R  L LS+  +V++DEAD+M+ +GF E V  IL+ LP
Sbjct:   482 PGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 527

 Score = 76 (31.8 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query:   263 AEDVEVILERLPQN---RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDS 310
             AED   +   L      RQ+MM++ATMP  +  +  KYL+ P  +T+   G++
Sbjct:   538 AEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEA 590


>POMBASE|SPCC63.11 [details] [associations]
            symbol:prp28 "U5 snRNP-associated protein Prp28
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
            "cis assembly of pre-catalytic spliceosome" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
            GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
            ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
            GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
        Length = 662

 Score = 285 (105.4 bits), Expect = 5.1e-31, Sum P(2) = 5.1e-31
 Identities = 66/159 (41%), Positives = 93/159 (58%)

Query:   125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE--KHGRGRNPLCLVLAPT 182
             IQ+A +   +Q +D+IG A TG+GKT AF IP++  I K     +      P  +VLAPT
Sbjct:   275 IQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPT 334

Query:   183 RELAKQVEKEFHESAPSLDTICV--YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
             RELA+Q++ E ++ A  L   CV   GG     Q   +  G   VV TPGR++D ++R  
Sbjct:   335 RELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRL 394

Query:   241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
               LS+  +VV+DEAD+ML +GF +DV  IL  LP +  S
Sbjct:   395 FVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNAS 433

 Score = 89 (36.4 bits), Expect = 5.1e-31, Sum P(2) = 5.1e-31
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
             RQ++MFSAT+PP + +L   YL  P  LT+  +G +  ++   + + S   S   ++VE 
Sbjct:   450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMIS-DDSKKWRRVEE 508

Query:   335 ALFS 338
              L S
Sbjct:   509 ILES 512


>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 355 (130.0 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 75/205 (36%), Positives = 126/205 (61%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
             I+  L ++   K++ IQ   +   M GRD+I  A TG+GKTL++  P++  ++   E   
Sbjct:   734 ILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLH-QEPLR 792

Query:   170 RGRNPLCLVLAPTRELAKQVEKE--FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
                 P+ ++L PTREL+ QV+ E   +  A +++ + VYGG+ I+ Q++ L  GV+ +VG
Sbjct:   793 NNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVG 852

Query:   228 TPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
             TPGR+ID++  +     NL+ V FVVLDEAD++L +GF   +  IL    +++Q+ M SA
Sbjct:   853 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISA 912

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGD 309
             T P +I+++  K L  P+ + +VG+
Sbjct:   913 TFPNYIQNMAKKLLYKPIEI-IVGE 936


>UNIPROTKB|Q8I416 [details] [associations]
            symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
            RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
            MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
            KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
            HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
        Length = 1490

 Score = 355 (130.0 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 75/205 (36%), Positives = 126/205 (61%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
             I+  L ++   K++ IQ   +   M GRD+I  A TG+GKTL++  P++  ++   E   
Sbjct:   734 ILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLH-QEPLR 792

Query:   170 RGRNPLCLVLAPTRELAKQVEKE--FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
                 P+ ++L PTREL+ QV+ E   +  A +++ + VYGG+ I+ Q++ L  GV+ +VG
Sbjct:   793 NNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVG 852

Query:   228 TPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
             TPGR+ID++  +     NL+ V FVVLDEAD++L +GF   +  IL    +++Q+ M SA
Sbjct:   853 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISA 912

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGD 309
             T P +I+++  K L  P+ + +VG+
Sbjct:   913 TFPNYIQNMAKKLLYKPIEI-IVGE 936


>DICTYBASE|DDB_G0291804 [details] [associations]
            symbol:ddx6 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
            ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
            EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
            OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
        Length = 423

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 88/255 (34%), Positives = 135/255 (52%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             +D +  EG D   L + +D++  +  +G  K  PIQ+  +  A+ GRD++ RA+ GTGKT
Sbjct:    41 EDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKT 100

Query:   151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGG 208
              +F IP L+K     +          L+L PTRELA Q  +   E     ++  +   GG
Sbjct:   101 ASFLIPALEKTDPTKDVIQ------VLILVPTRELALQTSQVCKELGKYMNVQVMASTGG 154

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  L   V  +V TPGRV+DL ++N  NLS    +++DEAD++LS  F   VE 
Sbjct:   155 TSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQ 214

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             ++  LPQ RQ ++FSAT P  ++S    YL+    ++L+ +   K   G++ Y  A    
Sbjct:   215 LINFLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLK---GVTQY-YAFVEE 270

Query:   329 MQKVE--NALFSLKQ 341
              QK+   N LFS  Q
Sbjct:   271 RQKIHCLNTLFSKLQ 285


>RGD|1564560 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
            species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
            complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
            body assembly" evidence=IEA;ISO] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
            IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
            Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
            UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
        Length = 483

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 92/296 (31%), Positives = 152/296 (51%)

Query:    53 SRFSAGTREFHAISRPLDFKSSIAWQHAQSAV--DDYVAYDDSSKDEGLDISKLDISQDI 110
             S  + GT++  A S     K    W+        D  +   D +  +G +     + +++
Sbjct:    49 STINNGTQQ-QAQSMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKREL 107

Query:   111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170
             +  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ A+ IP+L+++    +    
Sbjct:   108 LMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKD---- 163

Query:   171 GRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
               N   +V+ PTRELA QV +   +  +       +   GGT +   +  LD  V  V+ 
Sbjct:   164 --NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 221

Query:   228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
             TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E I+  LP+NRQ +++SAT P
Sbjct:   222 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281

Query:   288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE--NALFSLKQ 341
               ++   N +L+ P  ++L+ +   K   G++ Y  A     QKV   N LFS  Q
Sbjct:   282 LSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTERQKVHCLNTLFSRLQ 333


>ZFIN|ZDB-GENE-021220-2 [details] [associations]
            symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
            ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
            HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
            HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
            EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
            STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
            GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
        Length = 862

 Score = 351 (128.6 bits), Expect = 5.5e-31, P = 5.5e-31
 Identities = 86/259 (33%), Positives = 136/259 (52%)

Query:    89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
             A +   K  G     + +S  +   + ++G     PIQ+  +   + G+D++  ARTG+G
Sbjct:    69 AQNKKKKKSG-GFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 127

Query:   149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVY 206
             KT AF +P+ +K+ K  +     R    L+L PTRELA Q  K   E      L T  + 
Sbjct:   128 KTAAFLVPLFEKL-KAPQAQTGAR---ALILTPTRELALQTMKFTKELGKFTGLRTALIL 183

Query:   207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
             GG  +  Q  AL    D ++GTPGR++ +I+   L L  V++VV DEAD++  +GFAE +
Sbjct:   184 GGDSMDDQFAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQL 243

Query:   267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
             + I+ RLP  RQ+++FSAT+P  I       L  P+ + L  D D KL++ + L     S
Sbjct:   244 QEIIRRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRL--DVDTKLSEQLKLSFF--S 299

Query:   327 MNMQKVENALFSLKQNVMQ 345
             + +      L  L +NV++
Sbjct:   300 LRLDDKPALLLHLLRNVVK 318


>FB|FBgn0263231 [details] [associations]
            symbol:bel "belle" species:7227 "Drosophila melanogaster"
            [GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
            development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
            [GO:0016442 "RNA-induced silencing complex" evidence=IDA]
            [GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
            "regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
            sister chromatid segregation" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
            GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
            GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
            RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
            SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
            EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
            UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
            OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
            NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
        Length = 798

 Score = 350 (128.3 bits), Expect = 5.8e-31, P = 5.8e-31
 Identities = 92/236 (38%), Positives = 136/236 (57%)

Query:   100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
             D+   +I ++ VA LAR    K  P+QK  +   + GRD++  A+TG+GKT AF +PIL+
Sbjct:   299 DVQLTEIIRNNVA-LAR--YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355

Query:   160 KIIKFNE--------KHGRGRN-PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGG 208
             ++ +           ++ R +  PL LVLAPTRELA Q+ +E  + A    +    +YGG
Sbjct:   356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
                S QMR LD G   +V TPGR+ D+I R  + L  ++F+VLDEAD+ML +GF   +  
Sbjct:   416 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRR 475

Query:   269 ILERL---PQN-RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGI 318
             I+E+L   P   RQ++MFSAT P  I+ L + +L N   L V  VG + + +   I
Sbjct:   476 IVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTI 531


>UNIPROTKB|F1S0I6 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
            EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
            Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
        Length = 650

 Score = 347 (127.2 bits), Expect = 6.7e-31, P = 6.7e-31
 Identities = 92/265 (34%), Positives = 140/265 (52%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP----ILDKIIKF 164
             +++  + + G  K  PIQ       +QG D+IG A+TGTGKTL++ +P    +  + + F
Sbjct:   251 EVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVF 310

Query:   165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVD 223
             + +  R   P  LVL PTRELA QVE E  + S   L ++CVYGG     Q++ L  GVD
Sbjct:   311 SLQRARN-GPGMLVLTPTRELALQVEAECSKYSYKGLKSVCVYGGGDRDGQIKDLLKGVD 369

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
              ++ TPGR+ DL   N + L  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M S
Sbjct:   370 IIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTS 429

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
             AT P  +R L   YLK P+ V  VG  D      +    I T+ + ++     F    + 
Sbjct:   430 ATWPYAVRRLAQSYLKEPMIV-YVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSP 488

Query:   344 MQTAWLMLWLKVII--VSLCMGISH 366
                  + +  K +   +S  +GI H
Sbjct:   489 KDKVIIFVSRKAVADHLSSDLGIRH 513


>TAIR|locus:2088237 [details] [associations]
            symbol:EIF4A1 "eukaryotic translation initiation factor
            4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003743 "translation initiation factor
            activity" evidence=ISS] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
            "response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
            GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
            IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
            UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
            EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
            Uniprot:F4JEL4
        Length = 415

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 89/250 (35%), Positives = 133/250 (53%)

Query:    87 YVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTG 146
             + +YDD    E  D   + + ++++  +   G  K   IQ+  + P  +G D+I +A++G
Sbjct:    31 FTSYDDVH--ESFDA--MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSG 86

Query:   147 TGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---I 203
             TGKT  F   +L ++  F+    +      LVLAPTRELA+Q+EK        L      
Sbjct:    87 TGKTATFCSGVLQQL-DFSLIQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHA 140

Query:   204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
             CV GGT +    R L  GV  VVGTPGRV D++KR +L    ++  VLDEAD+MLS GF 
Sbjct:   141 CV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFK 199

Query:   264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
             + +  I + LP   Q  +FSATMPP    +T K++  P+ + LV   D+   +GI  + +
Sbjct:   200 DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI-LV-KRDELTLEGIKQFYV 257

Query:   324 ATSMNMQKVE 333
                    K+E
Sbjct:   258 NVEKEEWKLE 267


>UNIPROTKB|B7Z5N6 [details] [associations]
            symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
            DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
            variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
            Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
            HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
            EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
            UCSC:uc010ppl.1 Uniprot:B7Z5N6
        Length = 567

 Score = 344 (126.2 bits), Expect = 7.8e-31, P = 7.8e-31
 Identities = 77/221 (34%), Positives = 127/221 (57%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +D     + + +   L + G     PIQ  ++   + GRD++  A TG+GKT AF +P++
Sbjct:   203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
              + + F  K      P  L+L PTRELA Q+E   KE     P + T+ + GG P+  Q+
Sbjct:   263 MRAL-FESK-----TPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L   V  ++ TPGR++D+IK++++ L  V+ VV+DEAD ML +GF + V  ILE +P 
Sbjct:   317 YRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPN 376

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
             + Q+++ SAT+P  I  L ++ L NP+ + + G+ +   A+
Sbjct:   377 DCQTILVSATIPTSIEQLASQLLHNPVRI-ITGEKNLPCAN 416


>CGD|CAL0004095 [details] [associations]
            symbol:TIF species:5476 "Candida albicans" [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 88/245 (35%), Positives = 133/245 (54%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L++  +IV  +   G      IQ+  + P  +GRD++ +A++GTGKT  F I  L +I +
Sbjct:    28 LNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINE 87

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TI-CVYGGTPISHQMRALDYG 221
              NEK  +      L+LAPTRELA Q++         L  T+    GGT +S  + A   G
Sbjct:    88 -NEKATQA-----LILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSG 141

Query:   222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
             V  VVGTPGRV+D+I+R      +V+  +LDEAD+MLS GF E +  I   LP+  Q ++
Sbjct:   142 VQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201

Query:   282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQ 341
              SATMP  +  +T K++ NP+ + LV   D+   +GI  + I   +   K +  L  L  
Sbjct:   202 LSATMPQDVLEVTTKFMNNPVRI-LV-KKDELTLEGIKQFYINVELEDYKFD-CLCDLYD 258

Query:   342 NVMQT 346
             ++  T
Sbjct:   259 SISVT 263


>UNIPROTKB|P0A8J8 [details] [associations]
            symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
            catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
            GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
            PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
            ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
            PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
            EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
            KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
            EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
            ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
            BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
            Uniprot:P0A8J8
        Length = 421

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 78/209 (37%), Positives = 118/209 (56%)

Query:   110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
             +V AL ++G     PIQ   L   + GRD+ G+A+TGTGKT+AF       ++       
Sbjct:    20 VVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIAD 79

Query:   170 RGRN-PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
             R  N P  L++APTRELA Q+  +      A  L     YGG     Q++ L+ GVD ++
Sbjct:    80 RKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILI 139

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQSMMFSA 284
             GT GR+ID  K+N +NL  +Q VVLDEAD+M  +GF +D+  +  R+P    R +M+FSA
Sbjct:   140 GTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSA 199

Query:   285 TMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
             T+   +R L  + + N   +++  + +QK
Sbjct:   200 TLSYRVRELAFEQMNNAEYIEV--EPEQK 226


>UNIPROTKB|Q5ZKB9 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
            mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
            eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
            OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
            EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
            ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
            HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
            ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
        Length = 483

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>UNIPROTKB|E1BDM8 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
            EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
            UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
            GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
        Length = 483

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>UNIPROTKB|E2RR01 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
            assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
            RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
            KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
        Length = 483

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>UNIPROTKB|P26196 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
            [GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
            "RNA-induced silencing complex" evidence=IDA] [GO:0033962
            "cytoplasmic mRNA processing body assembly" evidence=IDA]
            [GO:0000288 "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
            GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
            KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
            EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
            RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
            PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
            ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
            STRING:P26196 PhosphoSite:P26196 DMDM:116241327
            DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
            PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
            Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
            KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
            HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
            neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
            PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
            GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
            CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
            Uniprot:P26196
        Length = 483

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>UNIPROTKB|F1SAJ5 [details] [associations]
            symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
            InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
            RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
            Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
            Uniprot:F1SAJ5
        Length = 483

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>UNIPROTKB|P87206 [details] [associations]
            symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
            species:237561 "Candida albicans SC5314" [GO:0003743 "translation
            initiation factor activity" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
            EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
            ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
            GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
            Uniprot:P87206
        Length = 397

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 88/245 (35%), Positives = 133/245 (54%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             L++  +IV  +   G      IQ+  + P  +GRD++ +A++GTGKT  F I  L +I +
Sbjct:    28 LNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINE 87

Query:   164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TI-CVYGGTPISHQMRALDYG 221
              NEK  +      L+LAPTRELA Q++         L  T+    GGT +S  + A   G
Sbjct:    88 -NEKATQA-----LILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSG 141

Query:   222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
             V  VVGTPGRV+D+I+R      +V+  +LDEAD+MLS GF E +  I   LP+  Q ++
Sbjct:   142 VQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201

Query:   282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQ 341
              SATMP  +  +T K++ NP+ + LV   D+   +GI  + I   +   K +  L  L  
Sbjct:   202 LSATMPQDVLEVTTKFMNNPVRI-LV-KKDELTLEGIKQFYINVELEDYKFD-CLCDLYD 258

Query:   342 NVMQT 346
             ++  T
Sbjct:   259 SISVT 263


>MGI|MGI:104976 [details] [associations]
            symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
            evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
            GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
            GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
            HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
            PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
            EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
            IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
            RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
            SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
            PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
            KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
            Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
            GermOnline:ENSMUSG00000032097 Uniprot:P54823
        Length = 483

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 84/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEAD++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>DICTYBASE|DDB_G0277857 [details] [associations]
            symbol:helB2 "putative U5 small nuclear
            ribonucleoprotein" species:44689 "Dictyostelium discoideum"
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0000375 "RNA splicing, via transesterification reactions"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
            GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
            GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
            RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
            EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
            OMA:DRYRDND Uniprot:Q54Y81
        Length = 834

 Score = 284 (105.0 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 63/176 (35%), Positives = 100/176 (56%)

Query:   105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
             ++ ++I+ A+ + G  K  PIQ   +  ++ GRD++G A TG+GKT AF IP+L  I K 
Sbjct:   419 NLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQ 478

Query:   165 NE--KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDY 220
                 K      P  LV+APTREL +Q+EKE    A       + + GG  I  Q   +  
Sbjct:   479 PRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSK 538

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
             G + ++ TPGR+ D +++  L L++  ++VLDEAD M+ +GF   V  +L+ +P +
Sbjct:   539 GCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSS 594

 Score = 91 (37.1 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334
             R +++FSATMPP +  L+ KYL+ P T+  +G++  K+ D I    I       K E+
Sbjct:   616 RTTILFSATMPPLVEKLSKKYLRRPCTIT-IGEAG-KVVDRIRQTVIFVKSENDKKEH 671


>TAIR|locus:2065215 [details] [associations]
            symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
            HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
            IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
            ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
            PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
            KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
            OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
            Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
        Length = 760

 Score = 347 (127.2 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 80/218 (36%), Positives = 126/218 (57%)

Query:   107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
             S  I++A+ ++   K   IQ   L   + GRD+IG A+TG+GKT AF +P++  I+   E
Sbjct:   236 SSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPE 295

Query:   167 KHGRGRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISHQMRALDYGVDA 224
                R   P+ ++ APTRELA Q+  E +    A  L    VYGG     Q + L  G + 
Sbjct:   296 LQ-RDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEI 354

Query:   225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284
             VV TPGR+ID++K  AL +    ++VLDEAD+M  +GF   V  I+ ++  +RQ+++FSA
Sbjct:   355 VVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSA 414

Query:   285 TMPPWIRSLTNKYLKNPL--TVDLVGDSDQKLADGISL 320
             TMP  +  L  + L +P+  TV  VG +++ +   +++
Sbjct:   415 TMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNV 452


>WB|WBGene00012059 [details] [associations]
            symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
            GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
            OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
            ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
            EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
            UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
            NextBio:892086 Uniprot:P34580
        Length = 489

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 85/270 (31%), Positives = 143/270 (52%)

Query:    81 QSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMI 140
             +  V + +  DD    +    ++L +SQ +  A  R G  K   IQ+A L  A+QG+D+I
Sbjct:    26 KKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVI 85

Query:   141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
             G A TG+GKT AF IP+L  ++   +         CLVL PTRELA Q+ ++F      +
Sbjct:    86 GLAETGSGKTGAFAIPVLQSLLDHPQAF------FCLVLTPTRELAFQIGQQFEALGSGI 139

Query:   201 DTIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQM 257
               I   + GG  ++ Q  AL      +V TPGR++D ++     NL  ++F+++DEAD++
Sbjct:   140 GLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRI 199

Query:   258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
             L++ F  +++ IL+ +P+ R++ +FSATM   +  L    L++P  V +   S  K  D 
Sbjct:   200 LNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSV--SSRYKTVDN 257

Query:   318 ISLYSIATSMNMQKVENALFSLKQNVMQTA 347
             +  + I    N  K    ++ L ++   +A
Sbjct:   258 LKQHYIFVP-NKYKETYLVYLLNEHAGNSA 286


>UNIPROTKB|Q5T1V6 [details] [associations]
            symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
            IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
            UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
            SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
            PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
            Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
            CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
            neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
            HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
            EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
            ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
            Genevestigator:Q5T1V6 Uniprot:Q5T1V6
        Length = 619

 Score = 344 (126.2 bits), Expect = 1.2e-30, P = 1.2e-30
 Identities = 77/221 (34%), Positives = 127/221 (57%)

Query:    99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
             +D     + + +   L + G     PIQ  ++   + GRD++  A TG+GKT AF +P++
Sbjct:   203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262

Query:   159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
              + + F  K      P  L+L PTRELA Q+E   KE     P + T+ + GG P+  Q+
Sbjct:   263 MRAL-FESK-----TPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
               L   V  ++ TPGR++D+IK++++ L  V+ VV+DEAD ML +GF + V  ILE +P 
Sbjct:   317 YRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPN 376

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
             + Q+++ SAT+P  I  L ++ L NP+ + + G+ +   A+
Sbjct:   377 DCQTILVSATIPTSIEQLASQLLHNPVRI-ITGEKNLPCAN 416


>UNIPROTKB|Q8EGU0 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/209 (37%), Positives = 129/209 (61%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII- 162
             L +S  ++ A+   G  +L  +Q+ V+  A+ G+D++  A+TGTGKT AF +P+L+++  
Sbjct:     6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAA 65

Query:   163 KFNEKHGRGRNPL--CLVLAPTRELAKQV---EKEFHESAPSLDTICVYGGTPISHQMRA 217
             K  +K      PL   LV+ PTRELA QV    +++ +  P L T+ VYGG  ++ Q + 
Sbjct:    66 KPADK------PLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKG 118

Query:   218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
             ++ GVD +V TPGR+ D+I +  L+LS V  +V+DEAD+ML +GF  D+E +   +    
Sbjct:   119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178

Query:   278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             Q+M+FSAT    ++ L++K L  P  V++
Sbjct:   179 QTMLFSATYSDAVKQLSHKMLNQPQWVNV 207


>TIGR_CMR|SO_1501 [details] [associations]
            symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
            OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
            GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
            ProtClustDB:CLSK906294 Uniprot:Q8EGU0
        Length = 456

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 79/209 (37%), Positives = 129/209 (61%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII- 162
             L +S  ++ A+   G  +L  +Q+ V+  A+ G+D++  A+TGTGKT AF +P+L+++  
Sbjct:     6 LGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAA 65

Query:   163 KFNEKHGRGRNPL--CLVLAPTRELAKQV---EKEFHESAPSLDTICVYGGTPISHQMRA 217
             K  +K      PL   LV+ PTRELA QV    +++ +  P L T+ VYGG  ++ Q + 
Sbjct:    66 KPADK------PLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKG 118

Query:   218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
             ++ GVD +V TPGR+ D+I +  L+LS V  +V+DEAD+ML +GF  D+E +   +    
Sbjct:   119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178

Query:   278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             Q+M+FSAT    ++ L++K L  P  V++
Sbjct:   179 QTMLFSATYSDAVKQLSHKMLNQPQWVNV 207


>TAIR|locus:2030285 [details] [associations]
            symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
            "plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
            membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
            to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
            stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
            GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
            ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
            EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
            RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
            SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
            EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
            GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
            PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
            Uniprot:Q9CAI7
        Length = 414

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 88/243 (36%), Positives = 128/243 (52%)

Query:    96 DEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
             DE  D    +++  D++  +   G  K   IQ+  + P  +G D+I +A++GTGKT  F 
Sbjct:    37 DEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFC 96

Query:   155 IPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---ICVYGGTP 210
               +L ++ I   +          LVLAPTRELA+Q+EK        L      CV GGT 
Sbjct:    97 SGVLQQLDISLVQCQA-------LVLAPTRELAQQIEKVMRALGDYLGVKAQACV-GGTS 148

Query:   211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
             +    R L  GV  VVGTPGRV DL++R +L    ++  VLDEAD+MLS GF + +  I 
Sbjct:   149 VREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIF 208

Query:   271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330
             + LP   Q  +FSATMPP    +T K++  P+ + LV   D+   +GI  + +       
Sbjct:   209 QLLPSKVQVGVFSATMPPEALEITRKFMNKPVRI-LV-KRDELTLEGIKQFYVNVDKEEW 266

Query:   331 KVE 333
             K+E
Sbjct:   267 KLE 269


>TAIR|locus:2037416 [details] [associations]
            symbol:RCF1 "regulator of CBF gene expression 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
            HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
            RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
            ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
            EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
            KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
            TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
            ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
            Uniprot:Q8H0U8
        Length = 1166

 Score = 349 (127.9 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 78/210 (37%), Positives = 121/210 (57%)

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
             ++  I+  + +    K  PIQ   L   M GRD IG A+TG+GKTL F +P+L + IK  
Sbjct:   536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML-RHIKDQ 594

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV--YGGTPISHQMRALDYGVD 223
                  G  P+ LV+APTREL +Q+  +  + +  L   CV  YGG+ ++ Q+  L  G +
Sbjct:   595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654

Query:   224 AVVGTPGRVIDLIKRNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
              VV TPGR+ID++  ++    NL  V F+V+DEAD+M  +GF   +  I++ +   RQ++
Sbjct:   655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV 714

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
             +FSAT P  + +L  K L  P+ + + G S
Sbjct:   715 LFSATFPRQVETLARKVLNKPVEIQVGGRS 744


>UNIPROTKB|A4QSS5 [details] [associations]
            symbol:DBP2 "ATP-dependent RNA helicase DBP2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
            GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
            ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
            KEGG:mgr:MGG_16901 Uniprot:A4QSS5
        Length = 548

 Score = 340 (124.7 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/183 (39%), Positives = 114/183 (62%)

Query:   133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVE 190
             A+ GRD++G A TG+GKTL + +P    I+  N +     G  P+ L+LAPTRELA Q++
Sbjct:   159 ALSGRDVVGIAETGSGKTLTYCLPA---IVHINAQPLLAPGDGPIVLILAPTRELAVQIQ 215

Query:   191 KEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
              E  +   S  +   CVYGG P   Q+R L  GV+  + TPGR+ID+++    NL  V +
Sbjct:   216 AEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTY 275

Query:   249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             +VLDEAD+ML +GF   +  I+ ++  +RQ++M+SAT P  +R++   +L++ + V+ +G
Sbjct:   276 LVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVN-IG 334

Query:   309 DSD 311
               D
Sbjct:   335 SLD 337


>UNIPROTKB|E1BII7 [details] [associations]
            symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
            SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
            GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
            EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
            Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
        Length = 647

 Score = 343 (125.8 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 86/220 (39%), Positives = 122/220 (55%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +++  + + G  K  PIQ       +QG D+IG A+TGTGKTL++ +P    I       
Sbjct:   251 EVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDS-QPVL 309

Query:   169 GRGRN-PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
              R RN P  LVL PTRELA QV+ E  E S   L ++C+YGG     Q++ L  G D ++
Sbjct:   310 QRARNGPGMLVLTPTRELALQVDAECSEYSYRGLKSVCIYGGGDRDGQIKDLSKGADIII 369

Query:   227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
              TPGR+ DL   N + L  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M SAT 
Sbjct:   370 ATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATW 429

Query:   287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
             P  +R L   YLK P+ V  VG  D      ++   I T+
Sbjct:   430 PYAVRRLAQSYLKEPMIV-YVGTLDLVAVSTVTQNIIVTT 468


>POMBASE|SPBC776.09 [details] [associations]
            symbol:ste13 "ATP-dependent RNA helicase Ste13"
            species:4896 "Schizosaccharomyces pombe" [GO:0000290
            "deadenylation-dependent decapping of nuclear-transcribed mRNA"
            evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISO;IDA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0030996 "cell cycle arrest in response to
            nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
            conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
            "mRNA transport" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
            GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
            GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
            OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
            OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
            ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
            EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
            NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
        Length = 485

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 90/277 (32%), Positives = 143/277 (51%)

Query:    69 LDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKA 128
             L+ + S   Q     VD     +D +K  G +     + ++++  +   G  +  PIQ+ 
Sbjct:    14 LNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEE 73

Query:   129 VLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188
              +  A+ GRD++ RA+ GTGKT AF IP L+K+   + K  + +    L+L PTRELA Q
Sbjct:    74 SIPIALSGRDILARAKNGTGKTAAFVIPSLEKV---DTKKSKIQT---LILVPTRELALQ 127

Query:   189 VEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
               +        ++   +   GGT +   +  L+  V  VVGTPGRV+DL  +   + SE 
Sbjct:   128 TSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSEC 187

Query:   247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
                V+DEAD++LS  F   +E +L   P+NRQ  ++SAT P  +++  +K+L  P  ++L
Sbjct:   188 TTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL 247

Query:   307 VGDSDQKLADGISLYSIATSMNMQKVE--NALFSLKQ 341
             +   D+    G++ Y  A     QKV   N LFS  Q
Sbjct:   248 M---DELTLRGVTQY-YAFVDESQKVHCLNTLFSKLQ 280


>TAIR|locus:2091191 [details] [associations]
            symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
            hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0035145 "exon-exon junction complex" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
            GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
            EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
            OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
            IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
            ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
            PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
            KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
            PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
            GermOnline:AT3G19760 Uniprot:Q94A52
        Length = 408

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 78/252 (30%), Positives = 135/252 (53%)

Query:    85 DDYVAYDDSSKDEGL-DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
             DD + ++ +   E +   + + I +D++  +   G  K   IQ+  + P +QGRD+I +A
Sbjct:    20 DDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQA 79

Query:   144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLD 201
             ++GTGKT    + +  +++  +      R    L+L+PTRELA Q EK         ++ 
Sbjct:    80 QSGTGKTSMIALSVC-QVVDTSS-----REVQALILSPTRELATQTEKTIQAIGLHANIQ 133

Query:   202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
                  GG  +   +R L++GV  V GTPGRV D+IKR +L    ++ ++LDE+D+MLS G
Sbjct:   134 AHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRG 193

Query:   262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
             F + +  +   LP + Q  + SAT+P  I  +T+K++  P+ + LV   D+   +GI  +
Sbjct:   194 FKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKI-LV-KRDELTLEGIKQF 251

Query:   322 SIATSMNMQKVE 333
              +A      K +
Sbjct:   252 FVAVEKEEWKFD 263


>WB|WBGene00018776 [details] [associations]
            symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
            GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
            HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
            RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
            PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
            KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
            InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
        Length = 970

 Score = 346 (126.9 bits), Expect = 2.4e-30, P = 2.4e-30
 Identities = 82/202 (40%), Positives = 117/202 (57%)

Query:   120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
             SK   IQ   +   M GRD+IG A+TG+GKTLAF +P+   I+   E    G  P+ ++L
Sbjct:   325 SKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELE-EGDGPIAVIL 383

Query:   180 APTRELAKQVEKEFHESA-P-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
             APTRELA Q  KE ++ A P  L   C YGG  IS Q+  L  G + VV TPGR+ID++ 
Sbjct:   384 APTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLA 443

Query:   238 RNA---LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
              N+    NL  V ++VLDEAD+M   GF   +  ++  +  ++Q+++FSAT P  + +L 
Sbjct:   444 ANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALA 503

Query:   295 NKYLKNPLTVDLVGDSDQKLAD 316
              K L  P+ + LVG      +D
Sbjct:   504 RKVLDKPVEI-LVGGKSVVCSD 524


>UNIPROTKB|F1NJ40 [details] [associations]
            symbol:DDX42 "ATP-dependent RNA helicase DDX42"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
            GeneTree:ENSGT00610000086076 EMBL:AADN02056764
            Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
        Length = 946

 Score = 335 (123.0 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 82/231 (35%), Positives = 124/231 (53%)

Query:    98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
             G   +     + ++  + +   ++  PIQ   +  AM GRDMIG A+TG+GKT AF  P+
Sbjct:   254 GSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPM 313

Query:   158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
             L  I+   E    G  P+ +++ PTREL +Q+  E      A +L ++ VYGG  +  Q 
Sbjct:   314 LIHIMDQKELEP-GDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 372

Query:   216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
             +AL  G + VV TPGR+ID +K+ A NL  V ++V DEAD+M  +GF   V  I   +  
Sbjct:   373 KALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRP 432

Query:   276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
             +RQ+++FSAT    I  L    L +P+ V + GD  +   D   +  I  S
Sbjct:   433 DRQTLLFSATFRKKIEKLARDILIDPIRV-VQGDIGEANEDVTQIVEIFPS 482

 Score = 37 (18.1 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query:    42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDE 97
             P IP  +   + +F++ + +  +   PL+   + + ++ Q+A  D    +D  K++
Sbjct:    89 PYIPAENSPTRQQFNSKSADSDSDDDPLEAFMAESVENDQAA-RDMKRLEDKDKEK 143


>WB|WBGene00017162 [details] [associations]
            symbol:ddx-23 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0010172 "embryonic body morphogenesis" evidence=IMP]
            [GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0040021 "hermaphrodite germ-line sex determination"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
            GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
            GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
            OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
            ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
            EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
            CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
            Uniprot:Q95QN2
        Length = 730

 Score = 303 (111.7 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 65/171 (38%), Positives = 103/171 (60%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL---DKIIKFN 165
             ++  A+   G  +  PIQ+  +   +Q RD+IG A TG+GKT AF +P+L     + K  
Sbjct:   311 EVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKME 370

Query:   166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVD 223
              +  R   P  +++APTRELA+Q+E+E ++    L   T+ V GG     Q   L  GV+
Sbjct:   371 RQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVE 430

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
              V+ TPGR++D+++   L L++  +V+LDEAD+ML +GF  DV+ +LE +P
Sbjct:   431 VVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMP 481

 Score = 65 (27.9 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             RQ++MF+ATM   I  L  +YL+ P  V +
Sbjct:   509 RQTVMFTATMSSAIERLARQYLRRPAVVHI 538


>UNIPROTKB|E1C8R1 [details] [associations]
            symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
            species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
            EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
            PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
            KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
        Length = 483

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 83/255 (32%), Positives = 139/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    89 DVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 148

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L+++    +      N   +V+ PTRELA QV +   +  +       +   GG
Sbjct:   149 AYLIPLLERLDLKKD------NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGG 202

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    +  VQ +VLDEA+++LS  F + +E 
Sbjct:   203 TNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMED 262

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             I+  LP+NRQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   263 IILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 318

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   319 RQKVHCLNTLFSRLQ 333


>ZFIN|ZDB-GENE-070912-83 [details] [associations]
            symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
            EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
            Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
        Length = 485

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 84/255 (32%), Positives = 140/255 (54%)

Query:    92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
             D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGK+ 
Sbjct:    90 DVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSG 149

Query:   152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGG 208
             A+ IP+L++I   + K  +      +V+ PTRELA QV +   +  +    +  +   GG
Sbjct:   150 AYLIPLLERI---DLK--KDSIQAAVVIVPTRELALQVSQICIQVSKHMGGVKVMATTGG 204

Query:   209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
             T +   +  LD  V  V+ TPGR++DLIK+    + +VQ +VLDEAD++LS  F + +E 
Sbjct:   205 TNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLSQDFVQMMEE 264

Query:   269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
             IL  L + RQ +++SAT P  ++   N +L+ P  ++L+ +   K   G++ Y  A    
Sbjct:   265 ILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK---GVTQY-YAYVTE 320

Query:   329 MQKVE--NALFSLKQ 341
              QKV   N LFS  Q
Sbjct:   321 RQKVHCLNTLFSRLQ 335


>UNIPROTKB|G3MYF0 [details] [associations]
            symbol:LOC100300937 "Uncharacterized protein" species:9913
            "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
            Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
        Length = 608

 Score = 340 (124.7 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 83/219 (37%), Positives = 121/219 (55%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
             +I+ ++ R G  K  PIQ       +QG D+IG A+TGTGKTL++ +P    I       
Sbjct:   211 EIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSR 270

Query:   169 GRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVG 227
              +   P  LVL PTRELA QVE E  +     L ++C+YGG     Q++ +  GVD ++ 
Sbjct:   271 KQRNGPGMLVLTPTRELALQVEAECSKYLYKGLKSVCIYGGGNRKGQIQDVTKGVDIIIA 330

Query:   228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
             TPGR+ DL   N +NL  + ++VLDEAD+ML +GF   +  IL  +  +RQ++M +A+ P
Sbjct:   331 TPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWP 390

Query:   288 PWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
                R L   YLK P+ V  VG  D    + +    I T+
Sbjct:   391 DSTRRLAQSYLKQPMIV-YVGTLDLVTVNTVKQNIIVTT 428


>UNIPROTKB|Q3MSQ8 [details] [associations]
            symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
            species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
            evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
            HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
            ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
        Length = 724

 Score = 342 (125.4 bits), Expect = 3.3e-30, P = 3.3e-30
 Identities = 87/272 (31%), Positives = 153/272 (56%)

Query:    54 RFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKD-EGLDI-------SKLD 105
             R   G R  + I  P   + S  ++H Q+ ++ +  YDD   +  G D+        + +
Sbjct:   235 RSEQGPRVTY-IPPPPPAEESDIFKHYQTGIN-FDKYDDIVVEVSGSDVPPAILTFEEAN 292

Query:   106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-IKF 164
             +   +   + + G  KL PIQK  +   + GRD++  A+TG+GKT AF +PIL  + +K 
Sbjct:   293 LCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKG 352

Query:   165 NEKHGRG--RNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDY 220
              E       + P  +++APTREL  Q+  +  + +    +  + +YGGT + H ++ +  
Sbjct:   353 VESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISE 412

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LP--QN 276
             G + +  TPGR++D+I++  + L++++++VLDEAD+ML +GF ED+E +L+   +P  + 
Sbjct:   413 GCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEE 472

Query:   277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
             RQ++MFSAT P  I+SL  + LK      +VG
Sbjct:   473 RQTLMFSATFPSSIQSLAREILKPDYLFVVVG 504


>UNIPROTKB|D6RCM4 [details] [associations]
            symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
            GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 HGNC:HGNC:18700 EMBL:AC016632 IPI:IPI00953956
            ProteinModelPortal:D6RCM4 SMR:D6RCM4 Ensembl:ENST00000506511
            ArrayExpress:D6RCM4 Bgee:D6RCM4 Uniprot:D6RCM4
        Length = 518

 Score = 336 (123.3 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 81/257 (31%), Positives = 146/257 (56%)

Query:    68 PLDFKSSIAWQHAQSAVD----DYVAYDDSSKDEG---LDISKLDISQDIVAALARRGIS 120
             P + + SI + H Q+ ++    D +  + S  D     L   + ++ Q +   +A+ G +
Sbjct:   231 PPEDEDSI-FAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYT 289

Query:   121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN---PLCL 177
             KL P+QK  +   + GRD++  A+TG+GKT AF +PIL  ++       R +    P C+
Sbjct:   290 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 349

Query:   178 VLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
             ++APTREL  Q+  E  + +    +  + +YGGT + H +R +  G + +  TPGR++D+
Sbjct:   350 IVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDI 409

Query:   236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE--RLP--QNRQSMMFSATMPPWIR 291
             I +  + L +++++VLDEAD+ML +GF  +++ ++    +P  + RQ++MFSAT P  I+
Sbjct:   410 IGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQ 469

Query:   292 SLTNKYLKNPLTVDLVG 308
              L  ++LK+      VG
Sbjct:   470 RLAAEFLKSNYLFVAVG 486


>WB|WBGene00022148 [details] [associations]
            symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
            ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
            EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
            UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
            OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
        Length = 739

 Score = 342 (125.4 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 86/229 (37%), Positives = 136/229 (59%)

Query:    91 DDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
             D  S D  +++S  ++++S+ I+ A +  G S   PIQ+A +  A+ G+D+   A TGTG
Sbjct:   138 DGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTG 197

Query:   149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT-ICVY- 206
             KT AF +PIL+++I +  K G     + LVL PTRELA QV + F + +  +   +C+  
Sbjct:   198 KTAAFVLPILERMI-YRPK-GASCTRV-LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCA 254

Query:   207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAED 265
             GG  +  Q  AL  G D VV TPGR+ID +  + + NLS ++ +VLDEAD+ML   F + 
Sbjct:   255 GGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQ 314

Query:   266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
             +  ++    QNRQ+++FSATM   I  L +  L+ P+ + +  ++D  L
Sbjct:   315 MNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTAL 363


>UNIPROTKB|Q86TM3 [details] [associations]
            symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
            Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
            HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
            EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
            UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
            SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
            PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
            KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
            HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
            PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
            EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
            Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
            GermOnline:ENSG00000184735 Uniprot:Q86TM3
        Length = 631

 Score = 340 (124.7 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 90/233 (38%), Positives = 136/233 (58%)

Query:   109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP--I-LD-KIIKF 164
             D++ ++ R GI K  PIQ       +QG D+I  A+TGTGKTL++ +P  I LD + I  
Sbjct:   232 DLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 291

Query:   165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVD 223
              +++G G     LVL PTRELA  VE E  + S   L +IC+YGG   + Q+  +  GVD
Sbjct:   292 EQRNGPGM----LVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVD 347

Query:   224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
              ++ TPGR+ DL   N++NL  + ++V+DEAD+ML + F   +  IL  +  +RQ++M S
Sbjct:   348 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 407

Query:   284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
             AT P  +R L   YLK+P+ V  VG+ +    + +    I T+   +K + AL
Sbjct:   408 ATWPDTVRQLALSYLKDPMIV-YVGNLNLVAVNTVKQNIIVTT---EKEKRAL 456


>SGD|S000002319 [details] [associations]
            symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
            decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
            "cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
            translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
            "deadenylation-dependent decapping of nuclear-transcribed mRNA"
            evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
            [GO:0033962 "cytoplasmic mRNA processing body assembly"
            evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
            granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
            GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
            GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
            GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
            GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
            OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
            RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
            SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
            STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
            GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
            EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
            GermOnline:YDL160C Uniprot:P39517
        Length = 506

 Score = 335 (123.0 bits), Expect = 3.6e-30, P = 3.6e-30
 Identities = 89/256 (34%), Positives = 131/256 (51%)

Query:    91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
             DD    +G       + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+ GTGKT
Sbjct:    38 DDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKT 97

Query:   151 LAFGIPILDKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--G 207
              AF IP L+K+  K N+          L++ PTRELA Q  +            C+   G
Sbjct:    98 AAFVIPTLEKVKPKLNKIQA-------LIMVPTRELALQTSQVVRTLGKHCGISCMVTTG 150

Query:   208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
             GT +   +  L+  V  +VGTPGRV+DL  R   +LS+    ++DEAD+MLS  F   +E
Sbjct:   151 GTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIE 210

Query:   268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
              IL  LP   QS++FSAT P  ++    K+L  P  ++L+ +   K   GI+ Y  A   
Sbjct:   211 QILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLK---GITQY-YAFVE 266

Query:   328 NMQKVE--NALFSLKQ 341
               QK+   N LFS  Q
Sbjct:   267 ERQKLHCLNTLFSKLQ 282


>ASPGD|ASPL0000054300 [details] [associations]
            symbol:AN0583 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
            STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
            KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
            OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
        Length = 936

 Score = 344 (126.2 bits), Expect = 3.7e-30, P = 3.7e-30
 Identities = 84/252 (33%), Positives = 140/252 (55%)

Query:    97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
             +G     + ++ +++ A+AR+G S   PIQ+  +   M+ +D++G ARTG+GKT AF IP
Sbjct:    89 KGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIP 148

Query:   157 ILDKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISH 213
             +++K+   + K G RG     L+L+P+RELA Q  K   E     D  ++ + GG  +  
Sbjct:   149 MIEKLKSHSTKFGARG-----LILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEE 203

Query:   214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
             Q   +    D V+ TPGR + L     L+LS +++VV DEAD++  +GFA  +  IL  L
Sbjct:   204 QFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGL 263

Query:   274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             P  RQ+++FSAT+P  +       L++P  V L  D++ K++    L +   S+   + E
Sbjct:   264 PSTRQTLLFSATLPKSLVEFARAGLQDPTLVRL--DTESKISP--DLQNAFFSVKSAEKE 319

Query:   334 NALFSLKQNVMQ 345
              AL  +   V++
Sbjct:   320 GALLYILNEVIK 331

 Score = 216 (81.1 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 59/182 (32%), Positives = 94/182 (51%)

Query:   177 LVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVID 234
             L+L+P+RELA Q  K   E     D  ++ + GG  +  Q   +    D V+ TPGR + 
Sbjct:   165 LILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLH 224

Query:   235 LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLT 294
             L     L+LS +++VV DEAD++  +GFA  +  IL  LP  RQ+++FSAT+P  +    
Sbjct:   225 LKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLLFSATLPKSLVEFA 284

Query:   295 NKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLK 354
                L++P  V L  D++ K++  +              +NA FS+K    + A L +  +
Sbjct:   285 RAGLQDPTLVRL--DTESKISPDL--------------QNAFFSVKSAEKEGALLYILNE 328

Query:   355 VI 356
             VI
Sbjct:   329 VI 330


>DICTYBASE|DDB_G0283661 [details] [associations]
            symbol:ddx3 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
            EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
            GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
            SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
            KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
        Length = 712

 Score = 341 (125.1 bits), Expect = 4.0e-30, P = 4.0e-30
 Identities = 87/243 (35%), Positives = 139/243 (57%)

Query:   104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
             +D+   ++  +     +K  P+QK+ L   ++ RD++  A+TG+GKT AF  PI+  I+ 
Sbjct:   252 VDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILL 311

Query:   164 FNE-------KHG--RGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPI 211
                       K G  R   P  LVLAPTRELA+Q+  E   F   +P + ++ +YGG  +
Sbjct:   312 DGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSP-VSSVVIYGGAEV 370

Query:   212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
              HQ+  LD G D +V T GR++DL+ R  ++LS+++++VLDEAD+ML +GF   +  I+ 
Sbjct:   371 FHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIIS 430

Query:   272 R--LP--QNRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSIAT 325
                +P  ++RQ++MFSAT P  I++L   +L N   L V +VG + Q +   I  Y +  
Sbjct:   431 EFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTT-QNITQRIE-YVVEE 488

Query:   326 SMN 328
               N
Sbjct:   489 DKN 491


>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
            symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
            PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
            RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
            Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
            NextBio:20787456 Uniprot:E7F1G8
        Length = 483

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 85/262 (32%), Positives = 140/262 (53%)

Query:    85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
             D  V   D +  +G +     + ++++  +   G  K  PIQ+  +  A+ GRD++ RA+
Sbjct:    74 DTRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAK 133

Query:   145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLD 201
              GTGK+ A+ IP+L++I    + + +      +VL PTRELA QV +      +    + 
Sbjct:   134 NGTGKSGAYLIPLLERI-DLKKDYIQA-----IVLVPTRELALQVSQISINMSKHLGGIK 187

Query:   202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
              +   GGT +   +  LD  V  ++ TPGR++DLIK+    + +VQ  V+DEAD++LS  
Sbjct:   188 VMATTGGTNLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQD 247

Query:   262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
             F   +E I+  LP+ RQ +++SAT P  ++    K+L+ P  ++L+   D+    GI+ Y
Sbjct:   248 FVVLIEDIISFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLM---DELTLKGITQY 304

Query:   322 SIATSMNMQKVE--NALFSLKQ 341
               A     QKV   N LFS  Q
Sbjct:   305 -YAYVTERQKVHCLNTLFSRLQ 325


>SGD|S000000441 [details] [associations]
            symbol:PRP5 "RNA helicase in the DEAD-box family"
            species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
            site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
            evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
            GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
            GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
            GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
            EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
            ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
            MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
            GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
            Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
        Length = 849

 Score = 342 (125.4 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 76/214 (35%), Positives = 127/214 (59%)

Query:   102 SKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
             S+L +S D +  +  +     L PIQ   L   M GRD+IG ++TG+GKT+++ +P+L +
Sbjct:   258 SQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQ 317

Query:   161 IIKFN--EKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
             +       KH  G  P+ L+LAPTRELA Q+ +E   F E+  S+ ++C  GG+ +  Q+
Sbjct:   318 VKAQRPLSKHETG--PMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQI 375

Query:   216 RALDYGVDAVVGTPGRVIDLIKRN---ALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
               L  G + VV TPGR ID++  N    L+   + FVV+DEAD++  +GF   +  I++ 
Sbjct:   376 TDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKT 435

Query:   273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
             +  ++Q ++FSAT P  +RS   + L +P+++ +
Sbjct:   436 VRPDKQCVLFSATFPNKLRSFAVRVLHSPISITI 469


>CGD|CAL0001091 [details] [associations]
            symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
            "U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
            RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
            GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
            Uniprot:Q59W52
        Length = 581

 Score = 337 (123.7 bits), Expect = 5.3e-30, P = 5.3e-30
 Identities = 101/343 (29%), Positives = 183/343 (53%)

Query:    42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLD 100
             P+I   ++I    FS G    H  ++ L+  +   W+  +   +DY +     +    L 
Sbjct:   113 PLIEMDEEIDDPLFS-GQESTHWTNKNLEEMTDRDWRIFK---EDYNITTKGKNIPNPLR 168

Query:   101 I-SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
               ++  I+  +V+ +++ G  +   +Q+A +  A++ RD++G A TG+GKTLAF IP+L+
Sbjct:   169 YWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLN 228

Query:   160 KIIKFNE---KHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISH 213
              I+  +E   K+ +  N P+ L+LAPTRELA Q+ KE  +    L    + + GG     
Sbjct:   229 YILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQD 288

Query:   214 QMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
              +  +D  GV  +V TPGR++D I+R  ++LS+   +V+DEAD+M+ +GF +D+  +L++
Sbjct:   289 TINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDK 348

Query:   273 LP----------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
             LP                + R +MMF+AT+ P +  LT KYL +P  +  +G + + L D
Sbjct:   349 LPTEKQLSSTIDGRIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYL-YIGGAGEAL-D 406

Query:   317 GISL-YSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIV 358
              IS  +   +S   +  +   F+    ++++ W +    +II+
Sbjct:   407 NISQSFEFLSSATTEATK---FNKLIKIIRSHWRVTENPLIII 446


>UNIPROTKB|Q59W52 [details] [associations]
            symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
            PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
            RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
            GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
            KEGG:cal:CaO19.8289 Uniprot:Q59W52
        Length = 581

 Score = 337 (123.7 bits), Expect = 5.3e-30, P = 5.3e-30
 Identities = 101/343 (29%), Positives = 183/343 (53%)

Query:    42 PVIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLD 100
             P+I   ++I    FS G    H  ++ L+  +   W+  +   +DY +     +    L 
Sbjct:   113 PLIEMDEEIDDPLFS-GQESTHWTNKNLEEMTDRDWRIFK---EDYNITTKGKNIPNPLR 168

Query:   101 I-SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
               ++  I+  +V+ +++ G  +   +Q+A +  A++ RD++G A TG+GKTLAF IP+L+
Sbjct:   169 YWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLN 228

Query:   160 KIIKFNE---KHGRGRN-PLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISH 213
              I+  +E   K+ +  N P+ L+LAPTRELA Q+ KE  +    L    + + GG     
Sbjct:   229 YILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQD 288

Query:   214 QMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
              +  +D  GV  +V TPGR++D I+R  ++LS+   +V+DEAD+M+ +GF +D+  +L++
Sbjct:   289 TINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDK 348

Query:   273 LP----------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
             LP                + R +MMF+AT+ P +  LT KYL +P  +  +G + + L D
Sbjct:   349 LPTEKQLSSTIDGRIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYL-YIGGAGEAL-D 406

Query:   317 GISL-YSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIV 358
              IS  +   +S   +  +   F+    ++++ W +    +II+
Sbjct:   407 NISQSFEFLSSATTEATK---FNKLIKIIRSHWRVTENPLIII 446


>FB|FBgn0052344 [details] [associations]
            symbol:CG32344 species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
            GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
            GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
            RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
            STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
            KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
            InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
            NextBio:847633 Uniprot:Q8SY39
        Length = 827

 Score = 341 (125.1 bits), Expect = 5.9e-30, P = 5.9e-30
 Identities = 78/230 (33%), Positives = 125/230 (54%)

Query:    93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
             S K++      + +  +++  + +RG     PIQ+  +   ++GRD++  A+TG+GKT  
Sbjct:    33 SKKNKSGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTAC 92

Query:   153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTP 210
             F IP+ +K+ +     G  R    L+L+PTRELA Q  K   E      L +I V GG  
Sbjct:    93 FLIPLFEKLQRREPTKG-AR---ALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDS 148

Query:   211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
             +  Q  A+    D +V TPGR + L     L L+ +++VV DEAD++  +GF E +   L
Sbjct:   149 MDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETL 208

Query:   271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
              RLP +RQ++MFSAT+P  +       L +P+ + L  D + KL D ++L
Sbjct:   209 HRLPSSRQTVMFSATLPKLLVEFARAGLNDPVLIRL--DVESKLPDALAL 256


>POMBASE|SPAC1F5.10 [details] [associations]
            symbol:SPAC1F5.10 "ATP-dependent RNA helicase
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
            OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
            ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
            EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
            NextBio:20802696 Uniprot:Q10055
        Length = 394

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 78/233 (33%), Positives = 125/233 (53%)

Query:   103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
             ++++ +D++  +   G      +Q   +    +GRD+I +A++GTGKT  F I IL  I 
Sbjct:    25 EMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSID 84

Query:   163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
                      R+   L+L+PTRELA Q++         ++  C    GGT + + ++ LDY
Sbjct:    85 L------SVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDY 138

Query:   221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
             G   V GTPGRV D+I+R  L    V+ ++LDEAD++L+ GF E +  I   LP   Q +
Sbjct:   139 GQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVV 198

Query:   281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
             + SAT+P  +  +TNK+  NP+ + LV   D+   +G+  Y IA      K +
Sbjct:   199 VVSATLPQDVLEMTNKFTTNPVRI-LV-KRDELTLEGLKQYFIAVEKEEWKFD 249

WARNING:  HSPs involving 588 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      384       384   0.00091  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  838
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.61u 0.12s 29.73t   Elapsed:  00:00:02
  Total cpu time:  29.65u 0.12s 29.77t   Elapsed:  00:00:02
  Start:  Mon May 20 22:33:48 2013   End:  Mon May 20 22:33:50 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
