BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016712
(384 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 272/347 (78%), Gaps = 25/347 (7%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ M
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEM 343
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 272/347 (78%), Gaps = 25/347 (7%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ M
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEM 343
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 272/347 (78%), Gaps = 25/347 (7%)
Query: 2 MSSIILKRSSSFLTSK---RALTAALTSVETILHSHL----------------AAAKSGP 42
M +II ++SSS + K RAL A++ V ++LH H+ + P
Sbjct: 1 MMNIISRKSSSLASVKAPIRAL-ASVPHVHSLLHFHIHPPISTSASDAVVARNVVTSAAP 59
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLD 100
+ P + S F R F + S PLDF++S+ + A+ AV D+ + SSK DEGL+
Sbjct: 60 IPPLSGLLGFSGFR--VRNFRSQSGPLDFRASVVSR-AEYAVADFSDEEKSSKGGDEGLE 116
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISKL I+Q+IV+ALA +GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK
Sbjct: 117 ISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+I++N KHGRGRNPL LVLAPTRELA+QVEKEF ESAP+LDT+CVYGGTPIS QM +LDY
Sbjct: 177 VIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLCVYGGTPISRQMNSLDY 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLIKR ALNLSEVQFVVLDEADQML+VGF EDVE+ILE+LPQNRQSM
Sbjct: 237 GVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSM 296
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
MFSATMP WIR LT KYLKNPLT+DLVGDSDQKLA+GISLYSIA+ M
Sbjct: 297 MFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEM 343
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/328 (68%), Positives = 257/328 (78%), Gaps = 9/328 (2%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSG----PVIPRHDDIIKSRFSA 57
M + +L+RS SKR L+A+LTS+ +L HLA A + VI D +K F +
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINAVLFHHLAPAAARVSDLAVIGSSD--VKPGFLS 57
Query: 58 G--TREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALA 115
G REFH S PL+F++S+ + + S+ +GL IS+L IS +IV AL+
Sbjct: 58 GVKAREFHFESGPLEFRASMVSSAGFAISESSERRVGDSESDGLAISELGISPEIVKALS 117
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
+GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHGRGRNPL
Sbjct: 118 SKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPL 177
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTPGRVIDL
Sbjct: 178 CLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL 237
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP WIRSLT
Sbjct: 238 MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 297
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSI 323
KYL NPLT+DLVGDSDQKLADGI+ YSI
Sbjct: 298 KYLNNPLTIDLVGDSDQKLADGITTYSI 325
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 257/334 (76%), Gaps = 18/334 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAG--TREFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/330 (65%), Positives = 256/330 (77%), Gaps = 23/330 (6%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+ S L S+R AAL S T +H + + +R
Sbjct: 1 MLTAILRRTCSTL-SRRGFPAALISASTA-GNHFRPPSAAFI---------------SRT 43
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK----DEGLDISKLDISQDIVAALARR 117
FH+ + PL+F+SS + A+ AVDD+ Y++ SK DEGL+I+KL IS+DIV+ALA++
Sbjct: 44 FHSNTGPLNFRSS-SCHRAEYAVDDF-PYEEGSKGNAADEGLEIAKLGISEDIVSALAKK 101
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177
GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRGR+PL L
Sbjct: 102 GITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLAL 161
Query: 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237
VLAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+
Sbjct: 162 VLAPTRELARQVETEFCESAPNLDTICVYGGTPISRQMRELDYGVDIAVGTPGRIIDLLN 221
Query: 238 RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297
R ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ Y
Sbjct: 222 RGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNY 281
Query: 298 LKNPLTVDLVGDSDQKLADGISLYSIATSM 327
L NPLT+DLVGDSDQKLADGISLYSIAT +
Sbjct: 282 LNNPLTIDLVGDSDQKLADGISLYSIATDL 311
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/334 (65%), Positives = 257/334 (76%), Gaps = 10/334 (2%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDII----KS 53
MMS+I+L+RSS+ S + + L + + L S + +H I KS
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKS 60
Query: 54 -RFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ + A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLVSK-AEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
L+ YL NPLT+DLVGDSDQKLADGISL+S+ +
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVS 333
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/329 (65%), Positives = 259/329 (78%), Gaps = 16/329 (4%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + +L+R+SS L S+R AAL S T + A H ++ + + +R
Sbjct: 1 MLTAVLRRTSSTL-SRRGFPAALISASTATATATAG--------NHFRLLSA--AVNSRT 49
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ PL+F++S + A+ AVDD+ Y++ SK DEGL+I+KL ISQDIV+ALA++G
Sbjct: 50 FHSNPGPLNFRAS-SCHRAEYAVDDF-PYEEGSKGNADEGLEIAKLGISQDIVSALAKKG 107
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DK+I+FN KHGRGR+PL LV
Sbjct: 108 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQFNAKHGRGRDPLALV 167
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELA+QVE EF ESAP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 168 LAPTRELARQVESEFCESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 227
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL +VQFVVLDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ ++ YL
Sbjct: 228 GALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYL 287
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSM 327
NPLT+DLVGDSDQKLADGISLYSIAT +
Sbjct: 288 NNPLTIDLVGDSDQKLADGISLYSIATDL 316
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/334 (64%), Positives = 254/334 (76%), Gaps = 10/334 (2%)
Query: 1 MMSSIILKRSSSFLTSKRALTAALTS-VETILHSHLAAAKSGPVIP--RHDDIIKSR--- 54
MMS+I+L+RSS+ S + + L + + L S + +H I
Sbjct: 1 MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKP 60
Query: 55 --FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDY-VAYDDSSKDEGLDISKLDISQDIV 111
F ++ FHA S PL+FK+S+ A+ AV+DY A S DEGL+I KL I+ +IV
Sbjct: 61 LGFGFQSKGFHAASGPLNFKASLV-SKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIV 119
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
+ALAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+I+FN K+GRG
Sbjct: 120 SALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRG 179
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
RNPL LVLAPTRELA+QVEKEF E+APSLDTICVYGG PIS QMR LDYGVD VGTPGR
Sbjct: 180 RNPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGR 239
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
+IDL+ R +LNLSEVQFVVLDEADQML VGF EDVE ILERLPQ RQSMMFSATMP WI
Sbjct: 240 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWIL 299
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
L+ YL NPLT+DLVGDSDQKLADGISL+S+ +
Sbjct: 300 KLSRNYLNNPLTIDLVGDSDQKLADGISLFSVVS 333
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/349 (63%), Positives = 257/349 (73%), Gaps = 30/349 (8%)
Query: 2 MSSIILKRSSSFL-TSKRALTAALTSVETILHSHLAAAK----------SGPVIPRHDDI 50
M S +L RS FL TS+R L A++TS+ L +LA A +G + +
Sbjct: 1 MISTVLHRS--FLGTSRRTLAASVTSINAALFHNLAPAAAATATVSDLANGATNVKSLPL 58
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEG------------ 98
+ F R+FH S P +F+SSI +A + +Y++S D G
Sbjct: 59 NSNPFGVKGRDFHVKSVPSEFRSSIVSPAGFAAQEYAPSYENS--DGGMGDSESVGSSSG 116
Query: 99 ---LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
L IS+L IS +IV AL RGI KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI
Sbjct: 117 GDGLAISELGISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 176
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P++DKIIKFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QM
Sbjct: 177 PVIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQM 236
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L+YG+D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP+
Sbjct: 237 RELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPE 296
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
RQSMMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct: 297 KRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 345
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/342 (63%), Positives = 252/342 (73%), Gaps = 20/342 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS-------GPVIPRHDDIIKSR 54
M S +L+RS TS+R L A++TS+ L +LA A + G + S
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS------------KDEGLDIS 102
F R+FH S P +F+SSI +A + +Y++ +GL I+
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIA 119
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
KFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMF
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
SATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 341
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/325 (66%), Positives = 254/325 (78%), Gaps = 24/325 (7%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDIIKSRFSAGTRE 61
M + IL+R+SS + S+R + AA IL S AA + RH R
Sbjct: 1 MITTILRRASSTI-SRRTIPAA----AEILFSTTAATEL-----RH---------LTARS 41
Query: 62 FHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRG 118
FH+ S+PL F++S A + +A + +++ SK DEGL+I+KL ISQDIV+AL ++G
Sbjct: 42 FHSKSQPLLFRASSASRAGYAA--EAFPFEEPSKSNSDEGLEIAKLGISQDIVSALEKKG 99
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
I+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPI+DKII+FN KHGRG++PL LV
Sbjct: 100 ITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALV 159
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
LAPTRELAKQVEKEF+E+AP+LDTICVYGGTPIS QMR LDYGVD VGTPGR+IDL+ R
Sbjct: 160 LAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNR 219
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
ALNL EVQFV+LDEADQML VGF EDVE ILERLP RQ++MFSATMP WI+ LT YL
Sbjct: 220 GALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAERQTLMFSATMPTWIKQLTRNYL 279
Query: 299 KNPLTVDLVGDSDQKLADGISLYSI 323
KNPLT+DLVGDSDQKLADGISLYSI
Sbjct: 280 KNPLTIDLVGDSDQKLADGISLYSI 304
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/271 (70%), Positives = 233/271 (85%), Gaps = 3/271 (1%)
Query: 59 TREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSK--DEGLDISKLDISQDIVAALAR 116
+R+FH S PLDFK+S Q A AV DY + ++ K +EGL+IS L IS++IV +LA+
Sbjct: 26 SRDFHVKSGPLDFKASSVTQ-AGIAVADYGSDEEKGKGSEEGLEISNLGISKEIVNSLAK 84
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
+GI+KLFPIQKAVLEPAMQG+DM GRARTGTGKTLAFGIPILDKII+FN++HG+GRNPL
Sbjct: 85 KGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFNKQHGKGRNPLA 144
Query: 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236
+V+APTRELA+QV+KEFH+SAPSLDTIC+YGG PIS QMR L+YGVD VVGTPGR+IDL+
Sbjct: 145 MVMAPTRELARQVQKEFHDSAPSLDTICLYGGVPISSQMRELEYGVDVVVGTPGRIIDLM 204
Query: 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296
KR +LNLSE+++VVLDEADQML VGF +D+E IL RLP+ R SM FSATMP WI+ L K
Sbjct: 205 KRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCFSATMPSWIKQLVRK 264
Query: 297 YLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
YLK+PLT+DLVGDSD+KLADGI+LYSIA+ M
Sbjct: 265 YLKDPLTIDLVGDSDRKLADGITLYSIASDM 295
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/272 (70%), Positives = 227/272 (83%), Gaps = 4/272 (1%)
Query: 58 GTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDDSSK---DEGLDISKLDISQDIVAA 113
G R FHA PL+F++S+ + AQ A++ DY Y++ S DEGL+I+KL I+ +IV A
Sbjct: 42 GARTFHANPGPLNFRASLVPRAAQFAIERDYSNYEEVSNANSDEGLEIAKLGIAPEIVDA 101
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LAR+GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD+I +FN KHG+GRN
Sbjct: 102 LARKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRITQFNAKHGQGRN 161
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
PL LVLAPTRELA+QVEKEF+E+AP+L TIC+YGG PI QMR L+YGVD VGTPGR+I
Sbjct: 162 PLALVLAPTRELARQVEKEFNEAAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRII 221
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DL+ R ALNL +V+FVVLDEADQML VGF E VE ILE L NRQ++MFSATMP WI+++
Sbjct: 222 DLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNI 281
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
T YL NPLT+DLVGDSDQKLADGISLYSI +
Sbjct: 282 TRNYLNNPLTIDLVGDSDQKLADGISLYSIVS 313
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 223/268 (83%), Gaps = 1/268 (0%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R+FH S PLDFK+S + +AV DY + +EGL+IS+L ISQ+IV ALA++GI
Sbjct: 4 RDFHVKSGPLDFKAS-SVTETFNAVPDYGYDEGKGNEEGLEISRLGISQEIVGALAKKGI 62
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
+KLFPIQ+AVLEPAMQG+DM GRARTGTGKTLAFGIPILDKI++FN +HGRGR PL +V+
Sbjct: 63 TKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFNAQHGRGRYPLGIVM 122
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF E+APSLD C+YGGTPIS QMR L+YGVD VVGTPGR+IDL+KR
Sbjct: 123 APTRELARQVEKEFREAAPSLDITCLYGGTPISQQMRDLEYGVDVVVGTPGRIIDLMKRG 182
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
+L LSEVQ VVLDEADQML VGF +D+E IL +PQ R SM FSATMP WIR L KYLK
Sbjct: 183 SLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFSATMPSWIRELVRKYLK 242
Query: 300 NPLTVDLVGDSDQKLADGISLYSIATSM 327
+PLT+DLVGDSD+KLA+GI+LYSIA+ +
Sbjct: 243 DPLTIDLVGDSDKKLAEGITLYSIASDL 270
>gi|255559126|ref|XP_002520585.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540245|gb|EEF41818.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 323
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/260 (71%), Positives = 217/260 (83%), Gaps = 13/260 (5%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDD------------SSKDEGLDISKLDIS 107
R H S PLDFK+S+ Q +AVDDY Y++ +S +EGL+I KL I+
Sbjct: 47 RGIHVKSGPLDFKASLMSQAEFAAVDDY-GYEEEKGGFGKGNNDINSDEEGLEIGKLGIA 105
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK 167
Q+IV+ALARRGI+KLFPIQKAVLEPAMQGRD+ GRARTGTGKTLAFGIPILDKII+FN K
Sbjct: 106 QEIVSALARRGITKLFPIQKAVLEPAMQGRDLFGRARTGTGKTLAFGIPILDKIIQFNAK 165
Query: 168 HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
HGRGRNPL LV+APTRELA+QVEKEFHESAPSLDTIC+YGGTPIS QM+ LDYGVD VVG
Sbjct: 166 HGRGRNPLALVMAPTRELARQVEKEFHESAPSLDTICLYGGTPISRQMKELDYGVDVVVG 225
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR+IDL+KR +LNLSE+QFVVLDEADQML VGF +D+E I +RLP+NR SM+FSATMP
Sbjct: 226 TPGRIIDLMKRGSLNLSEIQFVVLDEADQMLGVGFVDDIETIFQRLPKNRHSMLFSATMP 285
Query: 288 PWIRSLTNKYLKNPLTVDLV 307
WI++L YLK+PLT+DLV
Sbjct: 286 SWIKNLVRNYLKDPLTIDLV 305
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 222/272 (81%), Gaps = 4/272 (1%)
Query: 58 GTREFHAISRPLDFKSSIAWQHAQSAVD-DYVAYDD---SSKDEGLDISKLDISQDIVAA 113
G+R H PL+F++S + AQ AV+ DY Y++ ++ DEGL+I+ L I+ IV A
Sbjct: 43 GSRTIHTNPGPLNFRASAVPRAAQFAVERDYSNYEEVSGANSDEGLEIANLGIAPQIVDA 102
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
LA++GI+KLFPIQ+AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD II+FN KHG+GR+
Sbjct: 103 LAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSIIQFNAKHGQGRH 162
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
PL LVLAPTRELA+QVEKEF+E+AP+L IC+YGG PI QMR L+YGVD VGTPGR+I
Sbjct: 163 PLALVLAPTRELARQVEKEFNEAAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRII 222
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSL 293
DL+ R ALNL V+FVVLDEADQML VGF E VE ILE L NRQ++MFSATMP WI+++
Sbjct: 223 DLLNRGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNI 282
Query: 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
T YL NPLT+DLVGDSDQKLADGISLYSI +
Sbjct: 283 TRNYLNNPLTIDLVGDSDQKLADGISLYSIVS 314
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/315 (61%), Positives = 236/315 (74%), Gaps = 26/315 (8%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ V DD GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGA--AVGGDD-----GLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIAT 325
DQKL +GISLYSIA+
Sbjct: 295 DQKLPEGISLYSIAS 309
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/318 (62%), Positives = 235/318 (73%), Gaps = 19/318 (5%)
Query: 10 SSSFLTSKRALTAALTSVETILHSHLAAAKSG-PVIPRHDDIIKSRFSAGTREFHAISRP 68
SS T +R L AAL S + A G P PR R H P
Sbjct: 11 SSPAATCRRPLLAALLSPPSAPPGPCQAPTPGSPAPPR-------------RALHGSPNP 57
Query: 69 LDFKSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQK 127
L F+S+ A W V D+ +EGL+I++L IS IV LA RGI+KLFPIQ+
Sbjct: 58 LGFRSTPASWTRPGPGEGVGV---DTGAEEGLEIARLWISPRIVEKLAARGITKLFPIQR 114
Query: 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187
AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ NEK+G GRNPL +VLAPTRELA+
Sbjct: 115 AVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHNEKNGNGRNPLAIVLAPTRELAR 174
Query: 188 QVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
QVEKEF ESAP LDT+CVYGG PI+ QMR L+YGVD VVGTPGR+IDL++R LNLS++Q
Sbjct: 175 QVEKEFRESAP-LDTLCVYGGVPINQQMRVLNYGVDIVVGTPGRIIDLLRRGVLNLSQIQ 233
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
FVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++NKYL +P+ +DLV
Sbjct: 234 FVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLNDPVIIDLV 293
Query: 308 GDSDQKLADGISLYSIAT 325
GDSDQKL +GISLYSIA+
Sbjct: 294 GDSDQKLPEGISLYSIAS 311
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/266 (68%), Positives = 220/266 (82%), Gaps = 7/266 (2%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FHA RPL F+++ + + D GL+++KL IS IV LA RGI
Sbjct: 51 RAFHASPRPLGFRATTPASCPGTVTEAGAGED------GLEVAKLGISPRIVERLAARGI 104
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++L
Sbjct: 105 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGTGRNPLAIIL 164
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMR L+YGVD VVGTPGR+IDL++R
Sbjct: 165 APTRELARQVEKEFKESAP-LDTLCVYGGVPINQQMRTLNYGVDVVVGTPGRIIDLLRRG 223
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLSE+QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR L+N+YLK
Sbjct: 224 NLNLSEIQFVVLDEADQMLAVGFDEDVEVIMEKLPQNRQSMLFSATMPSWIRKLSNQYLK 283
Query: 300 NPLTVDLVGDSDQKLADGISLYSIAT 325
+P+ +DLVG+SDQKL +GISLYSIA+
Sbjct: 284 DPVIIDLVGESDQKLPEGISLYSIAS 309
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 222/270 (82%), Gaps = 5/270 (1%)
Query: 60 REFHAISRPLDFKSSIA-WQHAQSAVDDYVAYD---DSSKDEGLDISKLDISQDIVAALA 115
R FH + L F+S+ A W + D+ ++GL+I++L S IV LA
Sbjct: 52 RAFHCSTPTLGFRSTPASWAGPCPGEGEGEGEGEGVDTGAEKGLEIARLGTSPRIVEKLA 111
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
RGI++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ +NEK+G GRNPL
Sbjct: 112 ARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNEKNGNGRNPL 171
Query: 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDL 235
++LAPTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMRAL+YGVD VVGTPGRVIDL
Sbjct: 172 AIILAPTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRALNYGVDIVVGTPGRVIDL 230
Query: 236 IKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295
++R LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++N
Sbjct: 231 LRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISN 290
Query: 296 KYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
KYLK+P+ +DLVGDSDQKL +GISLYSIA+
Sbjct: 291 KYLKDPVIIDLVGDSDQKLPEGISLYSIAS 320
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/266 (67%), Positives = 220/266 (82%), Gaps = 5/266 (1%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FHA PL F+S+ + + A + ++GL++++L IS IV LA RGI
Sbjct: 52 RAFHASPGPLGFRSTTPAPWPGTVSEAGAA----AGEDGLEVARLGISPRIVERLAARGI 107
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++L
Sbjct: 108 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIIL 167
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PIS QMR L+YGVD VVGTPGRVIDL++R
Sbjct: 168 APTRELARQVEKEFRESAP-LDTLCVYGGVPISQQMRTLNYGVDVVVGTPGRVIDLLRRG 226
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLSE+QF+VLDEADQML+VGF E VEVI+E+LPQNRQSM+FSATMP WIR LTN+YLK
Sbjct: 227 VLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFSATMPSWIRKLTNQYLK 286
Query: 300 NPLTVDLVGDSDQKLADGISLYSIAT 325
+P+ +DLVGDS+QKL +GISLYSI +
Sbjct: 287 DPVIIDLVGDSEQKLPEGISLYSIVS 312
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 184/283 (65%), Positives = 221/283 (78%), Gaps = 19/283 (6%)
Query: 62 FHAISRPLDFKSSIAWQ---HAQSAVDDYVAYDDS---------------SKDEGLDISK 103
FH+ PL ++ + A + HAQ A D+ Y+D+ +K+EGL+++K
Sbjct: 50 FHSRPGPLGYRETGAARAGAHAQFAADEGWNYEDARKPAGAVSGAGAAAGAKEEGLEVAK 109
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L IS +IV LA +GI+KLFPIQKAVLEPAMQG+DM+GRA+TGTGKTLAFGIPI+D II+
Sbjct: 110 LGISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAIIR 169
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
NE + GR PL + LAPTRELAKQV+KEF +S+P L T+CVYGGTPI QMRALDYGVD
Sbjct: 170 HNEINKPGRLPLAICLAPTRELAKQVDKEFVDSSP-LQTLCVYGGTPIQQQMRALDYGVD 228
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGRVIDL+KR ALNLS VQFVVLDEADQMLSVGF EDVE+IL ++P RQ++MFS
Sbjct: 229 VVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMFS 288
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
ATMPPWIR L KYLK+P+ VDLVG+ DQKLA+GISL SIAT
Sbjct: 289 ATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATE 331
>gi|414883512|tpg|DAA59526.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 329
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 169/250 (67%), Positives = 205/250 (82%), Gaps = 1/250 (0%)
Query: 60 REFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGI 119
R FH + PL F+S+ A + D+ ++GL+I++L S IV LA RGI
Sbjct: 52 RAFHCSTTPLGFRSTPASWAGPCPGEGEGEGVDTGAEKGLEIARLGTSPRIVEKLAARGI 111
Query: 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179
++LFPIQ+AVLEPAMQG+DMIGRARTGTGKTLAFGIPI+DKI+ +NEK G GRNPL ++L
Sbjct: 112 TRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNEKTGNGRNPLAIIL 171
Query: 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN 239
APTRELA+QVEKEF ESAP LDT+CVYGG PI+ QMRAL+YGVD VVGTPGRVIDL++R
Sbjct: 172 APTRELARQVEKEFRESAP-LDTLCVYGGVPINQQMRALNYGVDIVVGTPGRVIDLLRRG 230
Query: 240 ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK 299
LNLS++QFVVLDEADQML+VGF EDVEVI+E+LPQNRQSM+FSATMP WIR ++NKYLK
Sbjct: 231 VLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLK 290
Query: 300 NPLTVDLVGD 309
+P+ +DLV D
Sbjct: 291 DPVIIDLVSD 300
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 179/279 (64%), Positives = 220/279 (78%), Gaps = 16/279 (5%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
P WIR LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+
Sbjct: 285 PTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIAS 323
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 220/279 (78%), Gaps = 16/279 (5%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+
Sbjct: 285 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIAS 323
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 220/279 (78%), Gaps = 16/279 (5%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 94 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 153
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 154 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 213
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 214 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 272
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 273 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 332
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+
Sbjct: 333 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIAS 371
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 174/232 (75%), Positives = 198/232 (85%), Gaps = 1/232 (0%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K+EGL+++KL IS +IV LA RGI++LFPIQ+AVLEPAMQG+DMIGRA+TGTGKTLAFG
Sbjct: 95 KEEGLEVAKLGISDEIVTRLAARGITRLFPIQRAVLEPAMQGQDMIGRAKTGTGKTLAFG 154
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
IPILD IIK N+KH GR PL + LAPTRELAKQV+KEF +S+P L T+CVYGGTPI HQ
Sbjct: 155 IPILDAIIKHNKKHQPGRFPLAICLAPTRELAKQVDKEFVDSSP-LKTLCVYGGTPIQHQ 213
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L YGVD VVGTPGRVIDL+KR ALNLS VQFVVLDEADQMLSVGF E VE IL+ +P
Sbjct: 214 IRELQYGVDIVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEAVEEILQSVP 273
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
RQ++MFSATMP WIR LT KYLKNP TVDLVG+ DQKLA+GISL SIAT
Sbjct: 274 VKRQTLMFSATMPTWIRKLTQKYLKNPATVDLVGEDDQKLAEGISLLSIATE 325
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/243 (69%), Positives = 208/243 (85%), Gaps = 2/243 (0%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A ++ +EGL+I+KL IS IV LA++GI+KLFPIQ+AVLEPAMQGRDM+GRA+TGTG
Sbjct: 88 ATGGAAAEEGLEIAKLGISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTG 147
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
KTLAFGIPILD II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+P L+T+CVYGG
Sbjct: 148 KTLAFGIPILDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSP-LETLCVYGG 206
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
TPI Q+R L+YGVD V+GTPGRVIDL+KR AL+L+E++FVVLDEADQMLSVGF +DVE
Sbjct: 207 TPIMQQIRQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVET 266
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
ILER+P RQ++MFSATMP WIR LT KYL +P+TVDLVG+ DQKLA+GISL S+ +S N
Sbjct: 267 ILERVPPQRQTLMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSV-SSEN 325
Query: 329 MQK 331
QK
Sbjct: 326 RQK 328
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 166/235 (70%), Positives = 202/235 (85%), Gaps = 2/235 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
EGL+I+KL IS IV LA +GI+KLFPIQ+AVLEPAMQGRDM+GRA+TGTGKTLAFGIP
Sbjct: 92 EGLEIAKLGISSKIVERLASKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIP 151
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF +S+P L+T+CVYGGTPI Q+R
Sbjct: 152 IMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREFLDSSP-LETLCVYGGTPIMQQIR 210
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+YGVD V+GTPGRVIDL+KR +L+L+E++FVVLDEADQMLSVGF DVE ILER+P
Sbjct: 211 KLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDEADQMLSVGFDLDVETILERVPPQ 270
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
RQ++MFSATMP WIR LT KYL NP+TVDLVG+ DQKLA+GISL ++ +S N +K
Sbjct: 271 RQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAEGISLLAV-SSENREK 324
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 193/244 (79%), Gaps = 6/244 (2%)
Query: 88 VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ D+ S D+G L IS+L I + ALA+RGI++LFPIQ+AVLEPAMQGRD+IGRA+T
Sbjct: 124 IRVDNESMDDGDELAISRLGIPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKT 183
Query: 146 GTGKTLAFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
GTGKTLAFGIPI++ II+ NE++ GR P LVLAPTRELAKQVE+EF ESAP L
Sbjct: 184 GTGKTLAFGIPIINNIIRENEENRVARRSGRAPRALVLAPTRELAKQVEREFMESAPMLS 243
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
TICVYGG IS Q R L GVD VGTPGR+IDLI R +L L EV+F+VLDEADQML+VG
Sbjct: 244 TICVYGGVAISSQQRLLTRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVG 303
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE++P RQSM+FSATMP W++ L+ KYL + LT+DLVG+SD+KLAD I LY
Sbjct: 304 FEEDVEQILEQMPNQRQSMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLY 363
Query: 322 SIAT 325
++AT
Sbjct: 364 AVAT 367
>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 619
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 188/231 (81%), Gaps = 3/231 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
KDE L I+ L +S+DIV ALA+RGI+ LFPIQ+AVLEPAM+G+D+I RA+TGTGKTLAFG
Sbjct: 1 KDE-LAINSLGVSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFG 59
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IPI+ I+ N ++ +GR+P LVLAPTRELAKQVE+EF ESAP L T+CVYGG PIS
Sbjct: 60 IPIIRHIVDGNAENAPRQGRSPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVPIS 119
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q R L+ GVD VGTPGR+IDLI R +L L +V F+VLDEADQML+VGF EDVE IL++
Sbjct: 120 MQQRQLERGVDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQ 179
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
LP+ RQSM+FSATMP W++ L+ KYL PLT+DLVGDSD+KLADGI +I
Sbjct: 180 LPKQRQSMLFSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAI 230
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 151/253 (59%), Positives = 195/253 (77%), Gaps = 11/253 (4%)
Query: 85 DDYVAYDD-------SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
DDY D+ + D LD+S L++SQ++V ALA RGI+ LFPIQ+AVL PA++GR
Sbjct: 123 DDYDYEDEIGNDVVVDNNDGNLDLSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGR 182
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEF 193
D+IGRA+TGTGKTLAFGIPI++++ K N+++ R P LVLAPTRELAKQVEKEF
Sbjct: 183 DLIGRAKTGTGKTLAFGIPIIERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEF 242
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
ESAP L T C+YGG Q AL GVD VVGTPGR+IDL+ +L L+EVQF+VLDE
Sbjct: 243 KESAPFLSTACIYGGVSYVSQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDE 302
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQML+VGF EDVE+IL+ LP RQSM+FSATMP W++ L+ K+L NP+T+DLVG++++K
Sbjct: 303 ADQMLAVGFEEDVEIILDNLPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEK 362
Query: 314 LADGISLYSIATS 326
LA+GI LY++AT+
Sbjct: 363 LAEGIKLYAVATT 375
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/237 (62%), Positives = 191/237 (80%), Gaps = 5/237 (2%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE L+++KL + Q ++ +L +RGIS+LFPIQ+AVL PA++GRD+I RA+TGTGKTLAF
Sbjct: 121 SADE-LEVAKLGLPQKLIDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAF 179
Query: 154 GIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
GIPIL ++ + +++ GR P LVLAPTRELAKQVEKE E+AP L+T+CVYGG
Sbjct: 180 GIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKETAPYLNTVCVYGGV 239
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDL+ N+L L EV+F+VLDEADQML+VGF EDVEVI
Sbjct: 240 SYTSQQSALSRGVDVVVGTPGRIIDLVNGNSLKLGEVEFLVLDEADQMLAVGFEEDVEVI 299
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
LE+LP+ RQSM+FSATMP WI+ L+ KYL NPLT+DLVGD ++KLA+GI LY+I+++
Sbjct: 300 LEKLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISST 356
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 189/237 (79%), Gaps = 5/237 (2%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S DE L+++KL + Q +V +L +RGIS+LFPIQ+AVL PA++GRD+I RA+TGTGKTLAF
Sbjct: 121 SADE-LEVAKLGLPQKLVDSLIKRGISQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAF 179
Query: 154 GIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
GIPIL ++ + +++ GR P LVLAPTRELAKQVEKE E+AP L+T+CVYGG
Sbjct: 180 GIPILKRVTEGHDERSNLRRLGRLPKVLVLAPTRELAKQVEKEMKETAPYLNTVCVYGGV 239
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDLI +L L EV+F+VLDEADQML+VGF EDVEVI
Sbjct: 240 SYTSQQSALSRGVDVVVGTPGRIIDLINGKSLKLGEVEFLVLDEADQMLAVGFEEDVEVI 299
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
LE LP+ RQSM+FSATMP WI+ L+ KYL NPLT+DLVGD ++KLA+GI LY+I+++
Sbjct: 300 LETLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAEGIKLYAISST 356
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/245 (61%), Positives = 186/245 (75%), Gaps = 5/245 (2%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
++S+DE LDISKL + Q +V L RGI+ LFPIQ+AVL P ++GRD+I RA+TGTGKTL
Sbjct: 90 NTSEDE-LDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTL 148
Query: 152 AFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
AFGIPI+ ++ + E G GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 149 AFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYG 208
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G + Q AL GVD VVGTPGR+IDL+K N+L L EV+++VLDEADQMLS GF EDVE
Sbjct: 209 GVSYATQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 268
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+I+T+
Sbjct: 269 VILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTA 328
Query: 328 NMQKV 332
++
Sbjct: 329 TSKRT 333
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/233 (64%), Positives = 185/233 (79%), Gaps = 3/233 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ KDE L I L +S+DIV ALA+RGI+ LFPIQ+AVLEPAM+G+D+I RA+TGTGKTLA
Sbjct: 21 AGKDE-LAIDSLGVSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLA 79
Query: 153 FGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
FGIPI+ II +++ GR+P LVLAPTRELAKQVE+EF ESAP L T+CVYGG
Sbjct: 80 FGIPIIQHIIDAHKESAPRHGRSPRALVLAPTRELAKQVEREFMESAPMLSTVCVYGGVS 139
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
IS Q R L+ GVD VGTPGR+IDLI R +L L V F+VLDEADQML+VGF EDVE IL
Sbjct: 140 ISMQQRQLERGVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERIL 199
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
++LP+NRQSM+FSATMP W++ L+ KYL PL ++LVGD+D KLA+GI+ +I
Sbjct: 200 QQLPKNRQSMLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAI 252
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/244 (62%), Positives = 185/244 (75%), Gaps = 3/244 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 103 ESVNPDELDISKLDLPSRLVESLRSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTL 162
Query: 152 AFGIPILDKIIKFNE--KHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
AFGIPI+ + + H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 163 AFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 222
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLI N+L LSEVQ++VLDEADQML+VGF EDVE+
Sbjct: 223 VSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEM 282
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
ILE LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI LY+IA +
Sbjct: 283 ILENLPSQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATAT 342
Query: 329 MQKV 332
++
Sbjct: 343 SKRT 346
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 4/253 (1%)
Query: 83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
A D A + DE LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+I R
Sbjct: 96 ASDSDSAAESVHPDE-LDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIAR 154
Query: 143 ARTGTGKTLAFGIPILDKIIKFNE--KHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPS 199
A+TGTGKTLAFGIPI+ + + H R GR P LVLAPTRELAKQVEKE ESAP
Sbjct: 155 AKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPY 214
Query: 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259
L T+CVYGG Q AL GVD VVGTPGR+IDLI N+L LSEVQ++VLDEADQML+
Sbjct: 215 LSTVCVYGGVSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLA 274
Query: 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
VGF EDVE+ILE LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+GI
Sbjct: 275 VGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIK 334
Query: 320 LYSIATSMNMQKV 332
LY+IA + ++
Sbjct: 335 LYAIAATATSKRT 347
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 154/263 (58%), Positives = 196/263 (74%), Gaps = 3/263 (1%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
+S +D+ + S + LDISKLD+ +V +L RGI++LFPIQ+AVL PA++GRD+
Sbjct: 89 GESEDEDFPSRTTSINADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDI 148
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEK--HGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
I RA+TGTGKTLAFGIPI++ + + + R R P LVLAPTRELAKQVEKE ESA
Sbjct: 149 IARAKTGTGKTLAFGIPIINGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESA 208
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
P L T+C+YGG Q AL GVD VVGTPGR+IDLI N L LSEV+++VLDEADQM
Sbjct: 209 PYLKTVCIYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQM 268
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
L+VGF EDVEVILE+LP RQSM+FSATMP W++ L KYL NPLT+DLVGD ++KLA+G
Sbjct: 269 LAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEG 328
Query: 318 ISLYSI-ATSMNMQKVENALFSL 339
I LY+I ATS + + + + L ++
Sbjct: 329 IKLYAISATSTSKRTILSDLITV 351
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 148/244 (60%), Positives = 187/244 (76%), Gaps = 4/244 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+++++ L +++L + +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 110 AAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 169
Query: 153 FGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
FGIPI+ ++ + +EK GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 170 FGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 229
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLIK N+L L EVQ +VLDEADQML+VGF EDVEV
Sbjct: 230 VSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEV 289
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
ILE+LP RQSM+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI LY+I T+
Sbjct: 290 ILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTAT 349
Query: 329 MQKV 332
++
Sbjct: 350 SKRT 353
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/239 (61%), Positives = 186/239 (77%), Gaps = 2/239 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 91 EEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 150
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 151 PMIKQIIEQDEGRSLGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNV 210
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I ++ ++
Sbjct: 271 PAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRT 329
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/239 (61%), Positives = 186/239 (77%), Gaps = 2/239 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 91 EEELAIARLGLPDQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 150
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 151 PMIKQIIEQDEGRSLGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGVSYNV 210
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++L
Sbjct: 211 QQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQL 270
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I ++ ++
Sbjct: 271 PAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTVTSKRT 329
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/243 (60%), Positives = 187/243 (76%), Gaps = 3/243 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+ KDE L IS+L + +VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTL
Sbjct: 85 EGDKDE-LAISRLGLPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTL 143
Query: 152 AFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
AFGIP++ +II+ +E GRGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 144 AFGIPMIKQIIEQDEGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVCVYGGV 203
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
+ Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE I
Sbjct: 204 SYNTQQNALSRGVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETI 263
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM 329
L++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI L++I +
Sbjct: 264 LQQLPAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTS 323
Query: 330 QKV 332
++
Sbjct: 324 KRT 326
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 185/239 (77%), Gaps = 2/239 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 85 NEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++I+ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + ++
Sbjct: 265 PAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRT 323
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 185/239 (77%), Gaps = 2/239 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E L I++L + ++VA L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 85 NEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGI 144
Query: 156 PILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
P++ ++I+ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 145 PMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNV 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++L
Sbjct: 205 QQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
P RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + ++
Sbjct: 265 PAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRT 323
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 190/245 (77%), Gaps = 3/245 (1%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + D LDISKL + +V +L +RGI+ LFPIQ+AVL PA++G+D+I RA+TGTGKT
Sbjct: 86 DTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKT 145
Query: 151 LAFGIPILDKIIKFNEK--HGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
LAFGIPIL + +E+ H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 146 LAFGIPILKGLTDDDEQSSHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYG 205
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL +GVD VVGTPGR+IDL+ N+L LSEVQ++VLDEAD+ML+VGF EDVE
Sbjct: 206 GVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGFEEDVE 265
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
VIL+++P RQ+M+FSATMP W++ L+ KYL NPLT+DLVG+ ++KLA+GI LY+++ +
Sbjct: 266 VILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATA 325
Query: 328 NMQKV 332
+ ++
Sbjct: 326 SSKRT 330
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 148/238 (62%), Positives = 182/238 (76%), Gaps = 2/238 (0%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+ L ISKL + Q +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLAFGI
Sbjct: 117 DDELAISKLGLPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGI 176
Query: 156 PILDKIIKFNEKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
PI+ I + ++ R GR P LVLAPTRELAKQVEKE +ESAP L T+CVYGG
Sbjct: 177 PIIKCITEDDKSSQRRTGRLPRVLVLAPTRELAKQVEKEINESAPYLSTVCVYGGVSYIT 236
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQMLS GF EDVEVILE L
Sbjct: 237 QRNALSRGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENL 296
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
P RQSM+FSATMP W++ L KYL NPL +DLVGD ++KLA+GI LY+I+T+ ++
Sbjct: 297 PSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKR 354
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/253 (59%), Positives = 193/253 (76%), Gaps = 4/253 (1%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + D LDISKL + +V +L +RGI LFPIQ+AVL PA++G+D+I RA+TGTGKT
Sbjct: 84 DTNVSDHELDISKLGLPSPLVHSLQKRGIISLFPIQRAVLVPALEGKDIIARAKTGTGKT 143
Query: 151 LAFGIPILDKIIKFNEK--HGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
LAFGIPIL + +E+ H R GR P LVLAPTRELAKQVEKE ESAP L T+CVYG
Sbjct: 144 LAFGIPILKGLTNDDEQSPHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYG 203
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q AL GVD VVGTPGR+IDL+ N+L LSEVQ++VLDEADQML+VGF EDVE
Sbjct: 204 GVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVE 263
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS-IATS 326
VIL+++P RQ+M+FSATMP W++ L+ KYL NPLT+DLVG+ ++KLA+GI LY+ +AT+
Sbjct: 264 VILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALLATA 323
Query: 327 MNMQKVENALFSL 339
+ + V + L ++
Sbjct: 324 TSKRTVLSDLITV 336
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 195/272 (71%), Gaps = 13/272 (4%)
Query: 70 DFKSSIAWQHAQSAVDDYVAYD-----DSSKDEGLDISKLDISQDIVAALARRGISKLFP 124
DF++ + A A DY + + ++S+DE LD+SKL + +V L RGI+ LFP
Sbjct: 103 DFEADV---DAGGADVDYASSETEPSSNTSEDE-LDVSKLGLPHRLVQTLQNRGITHLFP 158
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR----GRNPLCLVLA 180
IQ+AVL PA++GRD+I RA+TGTGKTLAFGIPI+ ++ + E G GR P LVLA
Sbjct: 159 IQRAVLIPALEGRDLIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLA 218
Query: 181 PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
PTRELAKQVEKE ESAP L ++CVYGG Q AL GVD VVGTPGR+IDL+K N+
Sbjct: 219 PTRELAKQVEKEIKESAPYLSSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNS 278
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
L L EV+++VLDEADQMLS GF EDVEVILE LP RQSM+FSATMP W++ L KYL N
Sbjct: 279 LKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDN 338
Query: 301 PLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
PL +DLVGD ++KLA+GI LY+++ + ++
Sbjct: 339 PLQIDLVGDQEEKLAEGIKLYALSATAASKRT 370
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/280 (54%), Positives = 198/280 (70%), Gaps = 11/280 (3%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD--DSSKDEG-------LDISKLDISQDIVAAL 114
A++ P S A++ Q DD S DEG L I++L + ++VA L
Sbjct: 44 AVASPNSVLSEHAFKRLQLGSDDEDEEGPYGSDADEGFQGDEEELAIARLGLPDELVATL 103
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGR 172
+RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFGIP++ ++++ ++ RGR
Sbjct: 104 EKRGITHLFPIQRAVLIPALGGRDLIARAKTGTGKTLAFGIPMIKQLMEQDDGRSTRRGR 163
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+
Sbjct: 164 TPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTPGRI 223
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++LP +RQSM+FSATMP W++
Sbjct: 224 IDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPADRQSMLFSATMPSWVKK 283
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
L+ +YL NPLT+DLVGD D+KLA+GI L++I + ++
Sbjct: 284 LSRRYLNNPLTIDLVGDQDEKLAEGIKLHAIPLTATSKRT 323
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 159/266 (59%), Positives = 203/266 (76%), Gaps = 8/266 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + DD +DE L ++ L I Q +V ALA+RGI KLFPIQ+AVL+PAMQGRD+IGRA+T
Sbjct: 37 DNESVDD--EDE-LAVANLGIPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKT 93
Query: 146 GTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201
GTGKTLAFGIPI+ I+K +E GR P LVLAPTRELAKQVE+EF ESAP L
Sbjct: 94 GTGKTLAFGIPIIHNILKAHEADRTSRRSGRAPRALVLAPTRELAKQVEREFMESAPMLS 153
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
T+CVYGG I+ Q R L GVD VGTPGR+IDLI+R +L+L +V ++VLDEADQML+VG
Sbjct: 154 TVCVYGGVSITTQQRQLQRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVG 213
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F EDVE ILE++P+ RQSM+FSATMP W++ L+ KYLK+PLT+DLVGDS++KLA+GI +
Sbjct: 214 FEEDVERILEQMPEERQSMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKML 273
Query: 322 SIATSMNMQK-VENALFSLKQNVMQT 346
++ ++ V N L S+ +V +T
Sbjct: 274 AVCIPPAAKRTVLNDLISVHGSVGKT 299
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/252 (59%), Positives = 185/252 (73%), Gaps = 7/252 (2%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D+ V DD E L ISKL + Q + +L +RGI+ LFPIQ+AVL PA+QGRD+I RA+
Sbjct: 91 DNNVVADDG---EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAK 147
Query: 145 TGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200
TGTGKTLAFGIPI+ ++ + ++ GR P LVLAPTRELAKQVEKE ESAP L
Sbjct: 148 TGTGKTLAFGIPIIKRLTEEAGDYSAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYL 207
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV+++VLDEADQML+V
Sbjct: 208 STVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAV 267
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISL 320
GF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DLVGD D+KLA+GI L
Sbjct: 268 GFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL 327
Query: 321 YSIATSMNMQKV 332
Y+IAT+ ++
Sbjct: 328 YAIATTSTSKRT 339
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 184/243 (75%), Gaps = 3/243 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ L ISKL++ Q + AL +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 106 AADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 165
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCL---VLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
FGIPIL K+ + +E R VL PTRELAKQVEKE ESAP L+T+CVYGG
Sbjct: 166 FGIPILKKLTEDDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGV 225
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q AL GVD VVGTPGR+IDLI N+LNL EV+++VLDEADQML+VGF EDVEVI
Sbjct: 226 SYITQQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVI 285
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM 329
LE+LP RQ+M+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI L++I T+
Sbjct: 286 LEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATS 345
Query: 330 QKV 332
++
Sbjct: 346 KQT 348
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 184/243 (75%), Gaps = 3/243 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ L ISKL++ Q + AL +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 106 AADDDELAISKLNLPQRLTDALQKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 165
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCL---VLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
FGIPIL K+ + +E R VL PTRELAKQVEKE ESAP L+T+CVYGG
Sbjct: 166 FGIPILKKLTEDDESRSLRRRSRLPRVLVLTPTRELAKQVEKEIKESAPYLNTVCVYGGV 225
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q AL GVD VVGTPGR+IDLI N+LNL EV+++VLDEADQML+VGF EDVEVI
Sbjct: 226 SYITQQNALSRGVDVVVGTPGRLIDLINGNSLNLGEVEYLVLDEADQMLAVGFEEDVEVI 285
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM 329
LE+LP RQ+M+FSATMP W++ L KYL NPLT+DLVGD D+KLA+GI L++I T+
Sbjct: 286 LEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLHAILTTATS 345
Query: 330 QKV 332
++
Sbjct: 346 KQT 348
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/271 (56%), Positives = 188/271 (69%), Gaps = 12/271 (4%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG---------RGRNPLCLVLAP 181
PA+QGRD+I RA+TGTGKTLAFGIPI I + E+ G GR P LVLAP
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPI---IKRLTEEAGDYTAFRSLRSGRLPKFLVLAP 190
Query: 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241
TRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L
Sbjct: 191 TRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSL 250
Query: 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NP
Sbjct: 251 KLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNP 310
Query: 302 LTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
L +DLVGD D+KLA+GI LY+IAT+ ++
Sbjct: 311 LNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 341
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 188/266 (70%), Gaps = 4/266 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+IAT+ ++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRT 339
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 188/266 (70%), Gaps = 4/266 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+IAT+ ++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRT 339
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 188/266 (70%), Gaps = 4/266 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+IAT+ ++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRT 339
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/198 (70%), Positives = 171/198 (86%), Gaps = 2/198 (1%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
MQGRDM+GRA+TGTGKTLAFGIPI+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+S+P L+T+CVYGGTPI Q+R L+YGVD V+GTPGRVIDL+KR +L+L+E++FVVLDE
Sbjct: 61 LDSSP-LETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVVLDE 119
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQMLSVGF DVE ILER+P RQ++MFSATMP WIR LT KYL NP+TVDLVG+ DQK
Sbjct: 120 ADQMLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQK 179
Query: 314 LADGISLYSIATSMNMQK 331
LA+GISL ++ +S N +K
Sbjct: 180 LAEGISLLAV-SSENREK 196
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 188/266 (70%), Gaps = 4/266 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+IAT+ ++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRT 339
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 146/248 (58%), Positives = 191/248 (77%), Gaps = 4/248 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+DE L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFG
Sbjct: 66 EDE-LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFG 124
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 125 IPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYN 184
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++
Sbjct: 185 VQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQ 244
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMNMQK 331
LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I TS + +
Sbjct: 245 LPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRT 304
Query: 332 VENALFSL 339
V + L ++
Sbjct: 305 VLSDLITV 312
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/231 (61%), Positives = 182/231 (78%), Gaps = 3/231 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+DE L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFG
Sbjct: 101 EDE-LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFG 159
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYN 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++
Sbjct: 220 VQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQ 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I
Sbjct: 280 LPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAI 330
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/270 (57%), Positives = 195/270 (72%), Gaps = 14/270 (5%)
Query: 89 AYDDS-------SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
A+DD+ SK+E LDISKL +V +L RRGI+ LFPIQ+AVL PA++GRD+I
Sbjct: 71 AFDDANDVPVAVSKNE-LDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIA 129
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESA 197
RA+TGTGKTLAFGIPI+ + + NE+ GR P LVLAPTRELAKQVEKE ESA
Sbjct: 130 RAKTGTGKTLAFGIPIIKGLTE-NEQSNMMRRSGRLPKVLVLAPTRELAKQVEKEIKESA 188
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
P L+T+CVYGG Q AL GVD VVGTPGR+IDLI L L+E+Q++VLDEADQM
Sbjct: 189 PYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGGTLKLAEIQYLVLDEADQM 248
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
L+VGF E VE ILE +P RQ M+FSATMP W++ L+ K+L NPLT+DLVGD ++KLA+G
Sbjct: 249 LAVGFEESVEEILESIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEG 308
Query: 318 ISLYSI-ATSMNMQKVENALFSLKQNVMQT 346
I LY++ ATS + +++ L S N +T
Sbjct: 309 IKLYAVSATSTSKRRILYGLISAYANGGKT 338
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/198 (69%), Positives = 171/198 (86%), Gaps = 2/198 (1%)
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
MQGRDM+GRA+TGTGKTLAFGIPI+D II+ NEK+ G+ PL +VLAPTRELAKQVE+EF
Sbjct: 1 MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVEREF 60
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+S+P L+T+CVYGGTPI Q++ L+YGVD V+GTPGRVIDL+KR AL+L+E++FVVLDE
Sbjct: 61 LDSSP-LETLCVYGGTPIMQQIKQLNYGVDVVIGTPGRVIDLLKRGALSLAEIRFVVLDE 119
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
ADQMLSVGF +DVE ILER+P Q++MFSATMP WIR LT K+L +P+TVDLVG+ DQK
Sbjct: 120 ADQMLSVGFDKDVETILERVPPQHQTLMFSATMPTWIRKLTQKFLNSPVTVDLVGEDDQK 179
Query: 314 LADGISLYSIATSMNMQK 331
LA+GISL S+ +S N +K
Sbjct: 180 LAEGISLLSV-SSENREK 196
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 143/242 (59%), Positives = 184/242 (76%), Gaps = 2/242 (0%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S D+ L I+ L +SQ+IV LA RGI+ LFPIQ+AV +PAM+G D+I RA+TGTGKTL
Sbjct: 14 ESKADDELAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTL 73
Query: 152 AFGIPILDKIIKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
AFGIPI+D+I + K R P LVLAPTRELAKQVE EF ES L T+CVYGG
Sbjct: 74 AFGIPIMDRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVCVYGGV 133
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
I Q R L GVD VGTPGR+IDL+++ L+LS+V+ +VLDEADQML+VGF EDVE I
Sbjct: 134 SIMSQKRLLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKI 193
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM 329
+E+LP+ RQ+M+FSATMP W++ L+ K+L PLT+DLVG+SD+KLA+GI LY++ TS
Sbjct: 194 MEQLPEKRQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAA 253
Query: 330 QK 331
++
Sbjct: 254 KR 255
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 187/267 (70%), Gaps = 27/267 (10%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+++++ L +++L + +V +L +RGI+ LFPIQ+AVL PA++GRD+I RA+TGTGKTLA
Sbjct: 110 AAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLA 169
Query: 153 FGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG 208
FGIPI+ ++ + +EK GR P LVLAPTRELAKQVEKE ESAP L T+CVYGG
Sbjct: 170 FGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 229
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q AL GVD VVGTPGR+IDLIK N+L L EVQ +VLDEADQML+VGF EDVEV
Sbjct: 230 VSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEV 289
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL---------------------- 306
ILE+LP RQSM+FSATMP W++ L KYL NPLT+DL
Sbjct: 290 ILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLD 349
Query: 307 -VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+I T+ ++
Sbjct: 350 HVGDHDEKLAEGIKLYAIPTTATSKRT 376
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/235 (60%), Positives = 180/235 (76%), Gaps = 2/235 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L I+ L +SQ+IV LA RGI+ LFPIQ+AV +PAM+G D+I RA+TGTGKTLAFGIPI+
Sbjct: 3 LAIAGLGVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIM 62
Query: 159 DKIIKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
D+I + K R P LVLAPTRELAKQVE EF ES L T+CVYGG I Q R
Sbjct: 63 DRIYRSRSKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVCVYGGVSIMSQKR 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VGTPGR+IDL+++ L+LS+V+ +VLDEADQML+VGF EDVE I+E+LP+
Sbjct: 123 LLSRGVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEK 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
RQ+M+FSATMP W++ L+ K+L PLT+DLVG+SD+KLA+GI LY++ TS ++
Sbjct: 183 RQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKR 237
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/245 (57%), Positives = 182/245 (74%), Gaps = 17/245 (6%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQ--------------KAVLEPAMQGRDMI 140
+DE L I++L + + +V+ L +RGI+ LFPIQ +AVL PA+ GRD+I
Sbjct: 108 EDE-LAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLI 166
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAP 198
RA+TGTGKTLAFGIP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP
Sbjct: 167 ARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAP 226
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML
Sbjct: 227 KLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQML 286
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+VGF EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI
Sbjct: 287 AVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGI 346
Query: 319 SLYSI 323
LY+I
Sbjct: 347 KLYAI 351
>gi|222626093|gb|EEE60225.1| hypothetical protein OsJ_13207 [Oryza sativa Japonica Group]
Length = 697
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 191/262 (72%), Gaps = 18/262 (6%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQ--------------KAVLEPAMQGRDMI 140
+DE L I++L + + +V+ L +RGI+ LFPIQ +AVL PA+ GRD+I
Sbjct: 101 EDE-LAIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLI 159
Query: 141 GRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAP 198
RA+TGTGKTLAFGIP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP
Sbjct: 160 ARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAP 219
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML
Sbjct: 220 KLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQML 279
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+VGF EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI
Sbjct: 280 AVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGI 339
Query: 319 SLYSIA-TSMNMQKVENALFSL 339
LY+I TS + + V + L ++
Sbjct: 340 KLYAIPLTSTSKRTVLSDLITI 361
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/249 (54%), Positives = 181/249 (72%), Gaps = 3/249 (1%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
+ + D++ +DE L ++ +S + VAAL +R I LFPIQK V PA GRD+IGRART
Sbjct: 36 EVLEVDETQQDESLLLANCGLSDETVAALGKRNIKALFPIQKHVFGPARAGRDLIGRART 95
Query: 146 GTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI 203
G+GKTLAF +P+L+ ++K N + RGR+P C++LAPTRELAKQVEKEF ESAP L+
Sbjct: 96 GSGKTLAFALPVLENLLKENSQSPPQRGRSPRCIILAPTRELAKQVEKEFQESAPGLNVG 155
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C YGG I Q+R L GVD VGTPGRVIDLI RN L+LS +FV+LDEAD MLS+GF+
Sbjct: 156 CFYGGVDIGGQIRQLRSGVDVAVGTPGRVIDLINRNCLDLSLTRFVILDEADMMLSMGFS 215
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYS 322
EDVE+IL+ +P RQ+M+FSATMP W++++T K+LKNP VDLVGD+ K+ D I +
Sbjct: 216 EDVEIILDSVPAERQTMLFSATMPSWVKNITRKHLKNPALVDLVGDAQSGKMPDAIKTMA 275
Query: 323 IATSMNMQK 331
+ + ++
Sbjct: 276 VHVTQEARR 284
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 175/232 (75%), Gaps = 2/232 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L I+ L I IV ALA+RGI LFPIQ+AV +PAMQG D+I RA+TGTGKTLAFGIP
Sbjct: 2 EELAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIP 61
Query: 157 ILDKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
ILD I K + + P ++LAPTRELAKQVE E +AP L +C+YGG I Q
Sbjct: 62 ILDNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVCIYGGVSIEGQ 121
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L V+ VVGTPGRVID+++R L L+EV+F +LDEADQML+VGFAE+VE I+++LP
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
R +M+FSATMP WIR+LT+KYLKNP +DLVG+++ K+A+GI LY+++T+
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTN 233
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 175/232 (75%), Gaps = 2/232 (0%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L I+ L I IV ALA+RGI LFPIQ+AV +PAMQG D+I RA+TGTGKTLAFGIP
Sbjct: 2 EELAIASLGIDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIP 61
Query: 157 ILDKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
ILD I K + + P ++LAPTRELAKQVE E +AP L +C+YGG I Q
Sbjct: 62 ILDNISREKSSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVCIYGGVSIEGQ 121
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
R L V+ VVGTPGRVID+++R L L+EV+F +LDEADQML+VGFAE+VE I+++LP
Sbjct: 122 RRQLASSVEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLP 181
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
R +M+FSATMP WIR+LT+KYLKNP +DLVG+++ K+A+GI LY+++T+
Sbjct: 182 LQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTN 233
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/234 (56%), Positives = 174/234 (74%), Gaps = 1/234 (0%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K + + + +S AAL +RGI LFPIQ +VLEPA+QGRD++GRARTGTGKTL F
Sbjct: 128 NKRDPMHVDNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGF 187
Query: 154 GIPILDKIIKF-NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
+PI++ ++ + + R RNP C+VLAPTRELA QVEKE + PSL T+CVYGG IS
Sbjct: 188 SLPIIESLLSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQATVPSLRTLCVYGGVAIS 247
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
+Q R L GVD VVGTPGR+IDLI+R +LNL ++++ VLDEADQML+VGF EDVE I+E
Sbjct: 248 NQERPLRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEE 307
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
+P+ RQ+ +FSATMP W+ +T KYL + +T+DLVG +QK+AD I + S A S
Sbjct: 308 IPEQRQTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACS 361
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 180/234 (76%), Gaps = 4/234 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEPAMQGRDMIGRARTGTGKTLAFGI 155
E L ++KL I +IV ALA++ I LFP+Q+ AV +PAM+GRD I RA+TGTGKTLAFG+
Sbjct: 2 EELAVAKLGIDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGL 61
Query: 156 PILDKI-IKFNEKHGRGR--NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
PIL I ++ E R + P C+V+APTRELAKQVEKE +AP L +C+YGG I
Sbjct: 62 PILHTITVERREATSRTQPGCPRCIVMAPTRELAKQVEKELTSTAPHLTLVCIYGGVSIE 121
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q R+L+ +D VVGTPGRVID+++R +L L+ V+F+VLDEADQML+ GFAEDVE I+ER
Sbjct: 122 SQRRSLERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMER 181
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
LP+ RQ+MMFSATMP W+++L +++++PL VDLVGD+D+KLA+GI LYS S
Sbjct: 182 LPKQRQTMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEAS 235
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 131/226 (57%), Positives = 167/226 (73%), Gaps = 1/226 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I IS AAL +RGI LFPIQ AVL PA++GRD++GRARTGTGKTL F +PI++
Sbjct: 146 IDNFPISVLTKAALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPIIES 205
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ N R R P C+VLAPTRELA QVE E + PS+ T+CVYGG I++Q RAL
Sbjct: 206 LLS-NPSDARNRRPRCIVLAPTRELANQVEAEIQLTVPSMRTVCVYGGVAITNQERALRN 264
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR+IDLI+R +L L ++++ VLDEADQML+VGF EDVE I++ +P+ RQ+
Sbjct: 265 GVDFVVGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQEIPEERQTF 324
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
+FSATMP W++ LT KYLK + +DLVGDS QK+AD I + S A S
Sbjct: 325 LFSATMPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACS 370
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 133/230 (57%), Positives = 168/230 (73%), Gaps = 3/230 (1%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D+ +S+ V AL +RG+ LFPIQ+AVL PAM G+D++GRARTGTGKTLAF +P+++
Sbjct: 26 DVDNFGMSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIE 85
Query: 160 KIIKFNEKHGRGRN--PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
K++ G P C+VLAPTRELAKQVE E +AP+LDT CVYGGTPI Q
Sbjct: 86 KLLSNGRGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLDTACVYGGTPIGQQESK 145
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGR++DL+ R AL+LSE++FVVLDEADQML+VGF EDVE IL P R
Sbjct: 146 LRRGVDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGR 205
Query: 278 QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
Q+ +FSATMP W++ +T K+LK + VDLVGD+ QK+AD I L + A S
Sbjct: 206 QTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVS 255
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/210 (61%), Positives = 158/210 (75%), Gaps = 4/210 (1%)
Query: 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPT 182
+AVL PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPT
Sbjct: 37 RAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPT 96
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L
Sbjct: 97 RELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLK 156
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L EV+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL
Sbjct: 157 LGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPL 216
Query: 303 TVDLVGDSDQKLADGISLYSIATSMNMQKV 332
+DLVGD D+KLA+GI LY+IAT+ ++
Sbjct: 217 NIDLVGDQDEKLAEGIKLYAIATTSTSKRT 246
>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/209 (58%), Positives = 161/209 (77%), Gaps = 2/209 (0%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D+ +S VAAL +RG+ LFPIQ+AVL+PA+ G D++GRARTGTGKTLAF +P++
Sbjct: 1 MDVGNFGMSAITVAALRKRGVDTLFPIQQAVLKPALSGEDVVGRARTGTGKTLAFALPVI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
++++ + GR RNP C+VLAPTRELAKQVE E +APSL+T+CVYGGTPI Q L
Sbjct: 61 ERLLT-DGTSGRSRNPKCIVLAPTRELAKQVENEICITAPSLETVCVYGGTPIGQQEGKL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV DL+ R +L+L E++FVVLDEADQML+VGF EDVE IL+ P++RQ
Sbjct: 120 RRGVDIVVGTPGRVQDLMNRRSLDLGEIEFVVLDEADQMLNVGFEEDVEAILQDCPESRQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLK-NPLTVDL 306
+ +FSATMP W++ +T K+LK + VDL
Sbjct: 180 TFLFSATMPSWVKQITKKFLKPGHVVVDL 208
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 164/242 (67%), Gaps = 15/242 (6%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ ++ +AAL ++GI LFPIQ A LEPA GRD++ RA+TGTGKTLAF +PI++K
Sbjct: 222 INNFNLHPITIAALKKKGIETLFPIQVAALEPAQSGRDVVARAKTGTGKTLAFSLPIVEK 281
Query: 161 IIKFNEKHG---------------RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
++ +E+ R + P C+VLAPTRELA+QVE+E + APS +T+ V
Sbjct: 282 FLREDEEENNRGDEDGEGTRRRGSRDKRPRCIVLAPTRELAQQVEREIYSLAPSFETLTV 341
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG PI Q L GVD VVGTPGRV+DL+ R L+LS VQ VVLDEADQML+VGF ED
Sbjct: 342 YGGAPIGPQESKLRRGVDFVVGTPGRVMDLLNRGTLDLSRVQHVVLDEADQMLAVGFEED 401
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
VE ILE +P+NRQ+ +FSATMP W++ L K+L + + +DLVG+ K+ I L S +
Sbjct: 402 VETILEDVPKNRQTFLFSATMPHWVKKLQQKFLVDQVNIDLVGEDTGKINKDIDLMSCSV 461
Query: 326 SM 327
+
Sbjct: 462 AF 463
>gi|326499968|dbj|BAJ90819.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 148/185 (80%), Gaps = 2/185 (1%)
Query: 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPT 182
+Q+AVL PA++GRD+I RA+TGTGKTLAFGIP++ +II+ +E GRGR P LVLAPT
Sbjct: 16 LQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIEQDEGRTPGRGRIPRALVLAPT 75
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI +L
Sbjct: 76 RELAKQVEKEIMESAPKLSTVCVYGGVSYNTQQNALSRGVDVVVGTPGRLIDLINGGSLQ 135
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W++ L+ +YL NPL
Sbjct: 136 LGEVRYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPSWVKKLSRRYLNNPL 195
Query: 303 TVDLV 307
T+DLV
Sbjct: 196 TIDLV 200
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/226 (56%), Positives = 162/226 (71%), Gaps = 3/226 (1%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D A + + D L + +S+ V AL RGI+ LFPIQK V EPAM+G D+I RA+T
Sbjct: 138 DDEAEEAAVVDPSLLLVNCGLSEGSVRALEERGITSLFPIQKTVFEPAMRGADLIARAKT 197
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAF IPI++KI+ R P CLVLAPTRELAKQVE+E +AP L C
Sbjct: 198 GSGKTLAFAIPIIEKIMAGPRNL---RKPQCLVLAPTRELAKQVEREIAATAPGLGCGCY 254
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG PI Q++ L GVD VVGTPGR+IDLI ++AL+LS V+FVVLDEADQML+VGF +D
Sbjct: 255 YGGNPIGPQLKELRRGVDIVVGTPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKD 314
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
VE ILE +PQ RQ+M+FSAT+P W++ L +YL NP +DLVG+ +
Sbjct: 315 VETILENVPQERQTMLFSATLPRWVKKLVKQYLNNPENIDLVGEGN 360
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 153/227 (67%), Gaps = 3/227 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + A LA RGI + PIQ L MQGRD+IGRARTGTGKTLAF IP++DK+
Sbjct: 7 IAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVIDKLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E RGR P L+LAPTRELAKQV +EF +SAP L T+ VYGG Q +AL GVD +
Sbjct: 67 E---RGRLPRALILAPTRELAKQVAEEFKKSAPELLTLTVYGGAAYGPQEKALYGGVDVI 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGRVID I+R L L VQF +LDEAD+MLSVGFA+ +E IL P+ RQ+M+FSAT
Sbjct: 124 VGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
+P + + NKYLK+PL VDLVG+S + A + + +V
Sbjct: 184 LPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTRV 230
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 168/246 (68%), Gaps = 18/246 (7%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I+ L +S + + ALA RGI LFP+Q VLEP GRD++ RA+TG+GKTLAF +P+++
Sbjct: 16 IANLGLSPETMDALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVEN 75
Query: 161 IIKFN------EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
+++ + + +GR+P C+VLAPTRELA QV +EF P+L YGG IS Q
Sbjct: 76 LLEVSGLRRPRTRPRKGRSPRCVVLAPTRELANQVSREFESVCPALKVDSFYGGVSISAQ 135
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
MR+L+ GVD VVGTPGRVIDL++R +L L V++ +LDEAD ML +GF +D+E IL +P
Sbjct: 136 MRSLERGVDVVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMP 195
Query: 275 ----QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMNM 329
RQ+++FSAT+P W++S+ +Y +NPLT+DLVG+ + +LAD I L +
Sbjct: 196 TAAANERQTLLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIRLL-------V 248
Query: 330 QKVENA 335
Q+VE A
Sbjct: 249 QQVEGA 254
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 154/213 (72%), Gaps = 5/213 (2%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--R 170
ALA RGI LFP+Q V EP M GRD++ RA+TG+GKTLAF +P+++ +++ N K +
Sbjct: 3 ALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPRK 62
Query: 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
GR P CLVLAPTRELA QV +EF P+L YGG IS Q+R+L+ GVD VVGTPG
Sbjct: 63 GRAPRCLVLAPTRELANQVSREFESVCPNLKVDSFYGGVSISPQIRSLENGVDVVVGTPG 122
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN--RQSMMFSATMPP 288
R+IDL++R L L +++ VLDEADQML +GF +D+E IL +P+ RQ+++FSAT+P
Sbjct: 123 RIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSATLPK 182
Query: 289 WIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISL 320
W++S+ +Y NPLT+DLVG+ + KLAD I L
Sbjct: 183 WVKSVAKRYQNNPLTIDLVGEENTGKLADTIRL 215
>gi|224124514|ref|XP_002330042.1| predicted protein [Populus trichocarpa]
gi|222871467|gb|EEF08598.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 150/230 (65%), Gaps = 8/230 (3%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ + ++ LDIS L + Q ++ L +GI+ LF IQ+AVL PA++GRD+I R +
Sbjct: 60 DALNHETTRPNDQLDISNLCLPQRLIQTLHTQGITILFTIQRAVLVPALEGRDIIARVKN 119
Query: 146 GTGKTLAFGIPILDKIIKFNEKH--------GRGRNPLCLVLAPTRELAKQVEKEFHESA 197
TGK LAFGIPI+ ++ + GR P LVL PTR LAKQVEKE SA
Sbjct: 120 RTGKALAFGIPIIKRLTEQTSSQILIMPHIMPNGRLPRVLVLTPTRVLAKQVEKEMKRSA 179
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
P L+T+C YGG Q AL GVD VVGTPGR I+L+K N+L L EV+++VLDEADQM
Sbjct: 180 PYLNTVCAYGGVSYIIQQNALSRGVDIVVGTPGRTIELLKGNSLKLGEVEYLVLDEADQM 239
Query: 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
LS GF EDVE+I LP QSM FSAT+ W++ L KYL + L +DLV
Sbjct: 240 LSFGFEEDVEIIFGNLPSKHQSMFFSATLTSWVKKLARKYLDSLLQIDLV 289
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 158/234 (67%), Gaps = 15/234 (6%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
DE D+ IS + LA+RGI+ LFP+Q + +GRD++ RARTGTGKTL F +
Sbjct: 46 DEPGDLRNFPISDQTLDCLAQRGITSLFPVQYSTFNEIFEGRDVLARARTGTGKTLGFSL 105
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
PIL E+ RG P C++L+PTRELA+QVE+E + T+CVYGG P Q
Sbjct: 106 PIL-------ERRSRGSAPACIILSPTRELAQQVEREVQ-----VKTLCVYGGVPYHKQE 153
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+ L GVD VVGTPGR+IDL+ AL+LSE++++VLDEAD+ML+ GFA+DVE ++ +PQ
Sbjct: 154 KELQMGVDIVVGTPGRLIDLMNNGALDLSEIRYLVLDEADEMLNRGFADDVETLMGGMPQ 213
Query: 276 NR---QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
Q+++FSAT+P W+R L L NP VDLVG+S K+A+G+S ++A++
Sbjct: 214 GADRPQTLLFSATVPDWVRKLARTSLVNPHEVDLVGESKLKVAEGVSHVAVASA 267
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/163 (64%), Positives = 126/163 (77%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EVQ++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSMLFSATMPSW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I + ++
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRT 178
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 153/227 (67%), Gaps = 3/227 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I ++ A LA RGI++ PIQ L +QGRD+IGRARTGTGKTLAF +PI+ +
Sbjct: 7 IVPELAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQNLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELAKQV EF +S +L T+ VYGG + Q AL GVD V
Sbjct: 67 E---RSRLPRAIVVAPTRELAKQVADEFSKSGANLTTVTVYGGASYAPQENALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+LS VQ+ VLDEAD+MLSVGFA+ +E ILE+ P+ RQ+M+FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLSAVQYAVLDEADEMLSVGFADAIETILEKTPEGRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
+ I L+ KYL++PLTVD+VG+ + A + + + +V
Sbjct: 184 LNGDINRLSRKYLRDPLTVDMVGEGKSQAAQTVEHLKVRVGRSRTRV 230
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 123/154 (79%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAI 169
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 123/154 (79%)
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG + Q AL GVD VVGTP
Sbjct: 16 RGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTP 75
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++LP RQSM+FSATMP W
Sbjct: 76 GRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGW 135
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAI 169
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 157/228 (68%), Gaps = 11/228 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + + +S+ + + L + I LFPIQ LEPAM+G D++GRARTG GKTLAF +P++
Sbjct: 104 LGLDRFKLSEQVKSMLRSQNIESLFPIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVV 163
Query: 159 DKIIKFNEK-----HGRGRNPLCLVLAPTRELAKQVEKEFHES--APSLDTICVYGGTPI 211
++II + G GR P+C+VLAPTRELAKQV++ F + A +L T+CVYGGTP
Sbjct: 164 ERIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYTMCVYGGTPY 223
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q +AL GVD VVGTPGRV DL++R L LS ++F VLDE DQML++GF EDVE IL+
Sbjct: 224 DGQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILK 283
Query: 272 RLPQNR---QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
+ NR Q+++FSAT+P W++ LT ++L+ +DLVGD + A
Sbjct: 284 QGENNRDQIQTLLFSATLPKWVQGLTQRFLRPGHKFLDLVGDDRMQAA 331
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 150/229 (65%), Gaps = 2/229 (0%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ A LA RGI++ PIQ L + G+D+IGRARTGTGKTLAF +PI+ + +
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPD 66
Query: 166 EKHGR--GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ R GR P +V+APTRELAKQV +EF +S P L T+ VYGG Q AL GVD
Sbjct: 67 GRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQLSTVTVYGGAAYGPQENALRRGVD 126
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR+ID ++R L+LS +Q+ VLDEAD+MLSVGFA+ +E IL++ P RQ+M+FS
Sbjct: 127 VVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFS 186
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
AT+ I L KYL+ P+ VDLVG+ + A + + +V
Sbjct: 187 ATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRTRV 235
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 150/227 (66%), Gaps = 3/227 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + A LA RGI++ PIQ L +QGRD+IGRARTGTGKTLAF +PI+ +
Sbjct: 7 IAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQGLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELA+QV EF ++ L + VYGG Q AL GVD V
Sbjct: 67 E---RSRLPRAIVVAPTRELARQVAAEFEQTGRELTVLTVYGGAAYGPQETALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+L EV++ VLDEAD+MLSVGFA+ +E IL+ P+ RQ+++FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGRQTLLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
+ P IR L+NKYL +PL VD+VG+ + A + + + +V
Sbjct: 184 LTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGRSRTRV 230
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 3/227 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ ++ A LA RGI++ PIQ L + GRDMIGRARTGTGKTLAF +PI+ K+
Sbjct: 7 IAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
E R R P +V+APTRELAKQV +EF +S L T+ VYGG + Q AL GVD V
Sbjct: 67 E---RARPPRAIVVAPTRELAKQVAEEFSKSGVGLTTVTVYGGASYAPQENALRRGVDVV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L+LS V+F VLDEAD+MLSVGFA+ +E IL++ P +RQ+M+FSAT
Sbjct: 124 VGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
+ I L+ YL+ P+ VD+VG+ + A + + + +V
Sbjct: 184 LNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRTRV 230
>gi|297613519|ref|NP_001067252.2| Os12g0611200 [Oryza sativa Japonica Group]
gi|255670477|dbj|BAF30271.2| Os12g0611200, partial [Oryza sativa Japonica Group]
Length = 157
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 122/137 (89%), Gaps = 1/137 (0%)
Query: 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+GTPG
Sbjct: 8 GKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVIGTPG 66
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATMP WI
Sbjct: 67 RVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWI 126
Query: 291 RSLTNKYLKNPLTVDLV 307
+ LT KYLKNP+T+DLV
Sbjct: 127 QRLTQKYLKNPVTIDLV 143
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 170/264 (64%), Gaps = 25/264 (9%)
Query: 84 VDDYVAYDDSSKDEGLDI------SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
+DDY + S+K E DI S ++S + +L RGI +LFPIQ A +P ++G
Sbjct: 123 IDDYKS---STKKEESDIPVNLRLSSHNLSLSTIESLKARGIVQLFPIQAASFDPIIKGM 179
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKH-----GRGRNPLCLVLAPTRELAKQVEKE 192
D++GRARTGTGKTLAF +P+++ + + E + RGR P L++APTRELA QV +E
Sbjct: 180 DLLGRARTGTGKTLAFSLPMIEVLKRERESNRHLFSQRGRAPRVLIMAPTRELAMQVHRE 239
Query: 193 FHE-SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251
F S+ L + C YGG+P Q A+ G+D +VGTPGR+ID I+R L L++++F+ L
Sbjct: 240 FDSISSGELKSTCAYGGSPYDSQCNAMRDGIDVIVGTPGRLIDHIERGTLKLNQLRFICL 299
Query: 252 DEADQMLSVGFAEDVEVILERLPQNR---------QSMMFSATMPPWIRSLTNKYLK-NP 301
DEADQML +GFAE +E IL+++ + + Q ++FSATMP WI+ +KY+K N
Sbjct: 300 DEADQMLDIGFAESMEKILQQVQEQKSKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNK 359
Query: 302 LTVDLVGDSDQKLADGISLYSIAT 325
+T+DL+G QK + + Y+IA+
Sbjct: 360 VTLDLIGTDKQKTSATVKHYAIAS 383
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 3/232 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I++ +S + + L + GI+ LFP+Q M+G D++GR++TG+GKTLAFG+PI++K
Sbjct: 83 ITEFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEK 142
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + G RNP L+L PTRELA QV E +P L T+ + GG P Q +
Sbjct: 143 LL---SRSGSRRNPGALILLPTRELATQVSSELSRLSPQLKTVTIVGGVPYHSQESRIRA 199
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR++DL ++ L+ +VQF VLDEAD ML GF E VE IL +P+ RQ +
Sbjct: 200 GVDIVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCV 259
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
M+SAT P W+ SLT KYLK+ +T+DLVG + + +S +I N + V
Sbjct: 260 MWSATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVV 311
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 154/228 (67%), Gaps = 11/228 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + + +S+ + + L + I LFPIQ LEP + G D++GRARTG GKTLAF +PI+
Sbjct: 102 LGLDRFPLSEQVKSMLRSQNIESLFPIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIV 161
Query: 159 DKIIKFNEKH---GR--GRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPI 211
++I+ K GR GR P+C+VLAPTRELAKQV++ F A +L T+CVYGGTP
Sbjct: 162 ERILAEQRKGVAAGRVAGRLPICIVLAPTRELAKQVQEVFANVGKAANLYTLCVYGGTPY 221
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL- 270
Q AL GVD VVGTPGR+ DL++R L LS ++F VLDE DQML++GF EDVE IL
Sbjct: 222 DGQETALSKGVDVVVGTPGRIKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILK 281
Query: 271 --ERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
E+ P + Q+++FSAT+P W++ LT ++L+ +DLVGD + A
Sbjct: 282 AGEQQPDSIQTLLFSATLPKWVKGLTQRFLRPGHRFMDLVGDDKMQAA 329
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 143/213 (67%), Gaps = 6/213 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + DIS+ L RGI+ LFPIQ E +G+D+IGRARTG GKTLAF +P+++K
Sbjct: 149 VDEFDISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEK 208
Query: 161 IIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + GR P LV+APTRELAKQV +F +APSL T C+YGG P Q AL
Sbjct: 209 LLMAGAGSLKPGRKPRVLVMAPTRELAKQVAADFELTAPSLKTTCIYGGAPYRPQEDALR 268
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----PQ 275
+GVD VVGTPGR++D + R L LS+ +F++LDEADQML +GF E++E + E Q
Sbjct: 269 WGVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQ 328
Query: 276 NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLV 307
RQ ++FSATMPPW+ + +Y+K + + +DLV
Sbjct: 329 GRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLV 361
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 152/223 (68%), Gaps = 11/223 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS V L RG LF IQ + G+D+IGRARTG+GKTL+F +P+++KI
Sbjct: 119 SDFRISPTTVKLLQDRGFKCLFAIQAQTYDHIYDGKDIIGRARTGSGKTLSFVLPVVEKI 178
Query: 162 IKFNEKHGR-----GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
F + G+ GR P + L+PTRELA+Q+ KEF APSL +CVYGG P + Q
Sbjct: 179 --FIDMAGKPRSTYGRPPKVVCLSPTRELARQIAKEFDLVAPSLKAVCVYGGAPYTPQEN 236
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL GVD V+GTPGRVID++ RN L L++V++V+LDEAD+ML++GFA+ V+ IL P+
Sbjct: 237 ALKRGVDIVIGTPGRVIDMLDRNCLKLTDVKYVILDEADEMLNIGFADAVDKILASAPKP 296
Query: 276 -NRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLA 315
RQ+++FSAT+PPW++ + K+++ N +TVDLVG+S K A
Sbjct: 297 DERQTLLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKLKAA 339
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 158/238 (66%), Gaps = 3/238 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+++ ++ +S+ + A L GI+ LFP+Q + M G+D++ R+RTG+GKT+AF +P++
Sbjct: 1 MNLEEVPLSKKVKAKLKECGITSLFPVQVKTFQTLMDGKDVVVRSRTGSGKTIAFALPVI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+KI+ N+ GR P CLV+APTRELA Q+++EF P + + CVYGG I Q+ AL
Sbjct: 61 EKILA-NKTRKHGRLPSCLVIAPTRELAIQIDREFTRIQPEVASTCVYGGVSIGMQVSAL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+ID + L++S V+ +LDEAD+ML +GF +DVE I+E LP ++Q
Sbjct: 120 RKGVDVVVGTPGRLIDHLVNGTLDVSAVETFILDEADEMLKMGFQDDVERIIEYLPPSKQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
+ ++SATMP W++ L KY K+ + D+VG+ + + I++ IA + NA+
Sbjct: 180 TNLWSATMPTWVKDLAQKYCKDVVFFDMVGNDSTRTS--ITIEHIAIACGYDSHANAI 235
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 157/244 (64%), Gaps = 15/244 (6%)
Query: 84 VDDY------VAYDDSSKDEG--LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ 135
VDD+ + +D ++ DEG + I + +S +V +LA I+ PIQ+ +P +
Sbjct: 157 VDDFKSFGEEMTFDTTAHDEGGEMSIDEKRVSPGVVESLAGANITHFTPIQRETFDPLFE 216
Query: 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEK 191
GRDMIGR+RTGTGKTLAFG+PIL+ + K E K+ RGR+P ++LAPTRELAKQ ++
Sbjct: 217 GRDMIGRSRTGTGKTLAFGLPILEAVAKNMEAAGTKNARGRSPSVIILAPTRELAKQCDE 276
Query: 192 EFHESAPSLDTI--CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ L +YGG P Q+R L+ G D +VGTPGR++D + R L+L++++ +
Sbjct: 277 QLSRIGRPLGLWIRTIYGGVPYERQIRDLESGFDVLVGTPGRIMDHLDRGTLSLNDIKHI 336
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNR-QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+LDEAD+ML +GFAED+E I + Q ++FSAT P W++ + KYLKNP+ VD VG
Sbjct: 337 ILDEADEMLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQVIARKYLKNPINVDAVG 396
Query: 309 DSDQ 312
++
Sbjct: 397 GGNR 400
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 147/224 (65%), Gaps = 6/224 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ +S+ I+ L RG+ PIQ A E GRD+IGR+RTGTGKTLAF +PI+ K
Sbjct: 192 FTSFQLSKKILEILEERGLRDATPIQSATFELIYSGRDIIGRSRTGTGKTLAFVLPIMQK 251
Query: 161 IIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMR 216
+++ E H R CLVLAPTRELAKQVE+EF A T C +GG+ Q R
Sbjct: 252 LVEQLETHNIDRVSEIQCLVLAPTRELAKQVEQEFSAFAKCFRFRTSCFFGGSSYEVQQR 311
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-- 274
A+ G+D +V TPGR+IDL++R +++L +V+F VLDEAD+MLS+GFAED++ I LP
Sbjct: 312 AIKRGIDILVATPGRLIDLLERGSVDLLKVKFFVLDEADEMLSMGFAEDIDKISTYLPPT 371
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+ RQ+++FSAT+PPW++ L NP+ VD +G+ D K + +
Sbjct: 372 RERQTLLFSATIPPWVQELAKSNKNNPIIVDAIGNKDTKTSTTV 415
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 139/212 (65%), Gaps = 3/212 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L + ++ AL RG + L P+Q A L A++GRD+I +ARTGTGKTLAF +PI
Sbjct: 1 MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ +GR P LVLAPTRELA QV E +AP L+ + VYGGT Q +AL
Sbjct: 61 ERL---EPARAKGRAPRALVLAPTRELALQVAGELDWAAPHLEVLTVYGGTGYGQQAQAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D ++R L+L+ V+ VVLDEAD+MLS+GF EDVE +L RQ
Sbjct: 118 RRGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
+++FSATMP W R L ++LK+P +LV D
Sbjct: 178 TLVFSATMPSWARRLAERHLKDPFVANLVKDE 209
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 144/218 (66%), Gaps = 3/218 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ + ALA RGIS PIQ L + GRD+IGRARTGTGKTLAF +PI ++
Sbjct: 7 IAPHLAEALAARGISAPSPIQIESLPHTLAGRDLIGRARTGTGKTLAFVLPITTRLEASR 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAV 225
+ GR P ++LAPTRELAKQV E +SA L T+ VYGG Q +AL GVD V
Sbjct: 67 QS---GRGPRAIILAPTRELAKQVAAEAEQSARHLTTVTVYGGAAYGPQEKALMRGVDIV 123
Query: 226 VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285
VGTPGR+ID ++R L L +VQ VLDEAD+MLSVGFA+ +E IL P++RQ+M+FSAT
Sbjct: 124 VGTPGRIIDHLERGNLRLDDVQIAVLDEADEMLSVGFADAIEQILRSAPKDRQTMLFSAT 183
Query: 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
+P + L +Y ++P+ VDLVG+ + + ++ +I
Sbjct: 184 LPSGVERLARQYQRDPVLVDLVGERASQASQTVTHLAI 221
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 140/212 (66%), Gaps = 3/212 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVLAPTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLAPTRELALQVASELSSVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPFRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
+++FSAT+P W + L +Y+KNP+ ++++ D
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDE 209
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 140/212 (66%), Gaps = 3/212 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
+++FSAT+P W + L +Y+KNP+ ++++ D
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDE 209
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 137/209 (65%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL RRGI+ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ E RGR P LVL PTRELA QV E AP L + VYGGT Q L
Sbjct: 61 QGLEASKE---RGRLPRALVLTPTRELALQVSGELQAVAPHLKVVTVYGGTGYGKQKEEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ AL+LS+V+ VLDEAD+MLS+GF E+VE IL P+ RQ
Sbjct: 118 TRGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W R L +Y+K+P+ +++V
Sbjct: 178 TLLFSATLPSWARKLAERYMKSPVVINVV 206
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 3/214 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ ++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +P
Sbjct: 6 QSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 65
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I +++ E RGR P LVL PTRELA QV E AP L + VYGGT Q
Sbjct: 66 IAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +
Sbjct: 123 ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ+++FSAT+P W + L +Y+KNP+ ++++ D
Sbjct: 183 RQTLLFSATLPSWAKRLAERYMKNPVLINVIKDE 216
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 3/214 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+ ++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +P
Sbjct: 6 QSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALP 65
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
I +++ E RGR P LVL PTRELA QV E AP L + VYGGT Q
Sbjct: 66 IAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +
Sbjct: 123 ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ+++FSAT+P W + L +Y+KNP+ ++++ D
Sbjct: 183 RQTLLFSATLPSWAKRLAERYMKNPVLINVIKDE 216
>gi|114794146|pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
gi|114794147|pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
gi|114794148|pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
gi|114794149|pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 139/209 (66%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W + L +Y+KNP+ ++++
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVI 206
>gi|326634352|pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
gi|326634353|pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
gi|326634354|pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
gi|326634355|pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
gi|326634356|pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
gi|326634357|pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
gi|326634362|pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
gi|326634363|pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
gi|326634364|pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
gi|326634365|pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
gi|330689454|pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
gi|330689455|pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PI+ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W + L +Y+KNP+ ++++
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVI 206
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 143/235 (60%), Gaps = 8/235 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + DI + V L RGI LFPIQ + + G+D++GRARTG GKTLAF +P
Sbjct: 98 ENPPLESFDICAETVKNLKARGIHTLFPIQAMTFDKILAGKDLMGRARTGMGKTLAFALP 157
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
+++ ++K RGR P + +APTRELAKQV EF +S PSL T+C+YGG Q
Sbjct: 158 VIELLLKDKRPRSRGRAPRVVCMAPTRELAKQVATEFEQSGPSLSTVCIYGGASYQSQNN 217
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A GVD +VGT GRVID I R L L +F++LDEAD ML +GF EDV+ + + Q
Sbjct: 218 AFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFAAMEQT 277
Query: 277 -------RQSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGISLYSI 323
RQ+++FSAT+P W+ + +KY+ K+ V+LV DSD + + + +I
Sbjct: 278 KNESSGKRQTLLFSATIPKWVTDVADKYMAKDREYVNLVKDSDDQASTDVQHIAI 332
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 155/250 (62%), Gaps = 8/250 (3%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
D V+ + ++ + + D+ VAAL RGI K P+Q + + GRD+IG++R
Sbjct: 242 DQMVSLVEVGEEGACPVEEKDVDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSR 301
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHG-----RGRNPLCLVLAPTRELAKQVEKEFHE--SA 197
TGTGKT+AFG+P++ + +F E H RGR+P LV+ PTRELA+QV E S
Sbjct: 302 TGTGKTIAFGLPVIQHLGRFAEDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGST 361
Query: 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257
L +GG QMR+L G+D +V TPGR++D ++R AL+LS+V+ VLDEAD+M
Sbjct: 362 FGLKADVFHGGAAYGPQMRSLSDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEM 421
Query: 258 LSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
L++GFA+D+E I + + Q ++FSAT+P W+R++ NKY NPLTVD VG KLA
Sbjct: 422 LNMGFADDIETIFSYVDVKECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLAT 481
Query: 317 GISLYSIATS 326
+ SI S
Sbjct: 482 TVKHLSIEVS 491
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 140/212 (66%), Gaps = 3/212 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVLAPTRELA QV E A L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLAPTRELALQVASELASVATHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
+++FSAT+P W + L +Y+KNP+ ++++ D
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVIKDE 209
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 152/245 (62%), Gaps = 9/245 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S +I + + L +GI LFPIQ E G DM+GRARTG GKTLAF +P+L+
Sbjct: 112 VSNFNIGKALRDKLKAKGIESLFPIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVLES 171
Query: 161 IIK--FNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
+ + + + RGR +VLAPTRELAKQV +F + SA L T+CVYGG P Q
Sbjct: 172 LSQSGYTKNLQRGRAAAVIVLAPTRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQEN 231
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--P 274
AL GVD VVGTPGR+ D +R LNL ++F +LDEAD+ML++GF +DVE IL + P
Sbjct: 232 ALRRGVDIVVGTPGRIKDHFERGTLNLKSLKFRILDEADEMLNMGFVDDVETILGGVDDP 291
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGIS--LYSIATSMNMQK 331
Q+++FSAT+P W++ + K+LK TVDLVGD K ++ + L SM Q
Sbjct: 292 SKVQTLLFSATLPTWVQQIARKFLKATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRTQL 351
Query: 332 VENAL 336
V++ +
Sbjct: 352 VQDVI 356
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 147/230 (63%), Gaps = 9/230 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S ISQ L RGI LFPIQ L+ + G D+IGRARTG GKTLAF +P+++
Sbjct: 144 LSNFKISQATRTRLEARGIKSLFPIQSMTLQKILDGCDLIGRARTGCGKTLAFALPVVEL 203
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALD 219
I +E+ RG P LVLAPTRELAKQV EF AP +L ++C+YGG P Q AL
Sbjct: 204 I--GDEREERGAPPKVLVLAPTRELAKQVADEFEACAPATLRSVCIYGGAPYRPQEEALR 261
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN--- 276
GV VVGTPGR++D I+R L LS ++F++LDEAD ML +GF +D++ + + + Q+
Sbjct: 262 RGVQVVVGTPGRILDHIERGTLKLSGLRFLILDEADSMLDMGFKDDIQKVCDAMGQDSHQ 321
Query: 277 -RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGISLYSI 323
RQ ++FSAT+PPW++ + +Y++ + VDLV D K + + +I
Sbjct: 322 RRQVLLFSATLPPWVQKVAQQYMRKDKLVQVDLVQGEDAKASTDVRHVAI 371
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 136/209 (65%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL+RRGI PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKAEIQEALSRRGIVAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ +E RGR P +VL PTREL QV E AP L + VYGGT Q L
Sbjct: 61 QALEASSE---RGRPPRAIVLTPTRELCLQVASELAAVAPHLKVVAVYGGTGYGKQREEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +K+ L+LS+V+ VLDEAD+MLS+GF E+VE IL+ PQ RQ
Sbjct: 118 ARGADVVVATPGRALDYLKQGVLDLSQVRIAVLDEADEMLSMGFEEEVEAILKATPQERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W R L +Y++ P+ +++V
Sbjct: 178 TLLFSATLPSWARRLAERYMRAPVVINVV 206
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D D S +D+ L +S +IS+++ A L +GI+ L+ IQ + + G+D++ RA+T
Sbjct: 114 DEANEDASPEDDPLRVSNFNISREVCARLETKGITSLYGIQAQTFQHVLDGKDIVARAKT 173
Query: 146 GTGKTLAFGIPILDKI-----IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAP 198
G GKTLAF +PI++ I + N + +GR P+ +LAPTRELAKQV +F A
Sbjct: 174 GCGKTLAFVLPIVEAINREHPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHIGHAF 233
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L ICVYGG P Q R L G D V+GTPGR+ D ++R L+ +++F VLDEAD+ML
Sbjct: 234 KLTAICVYGGAPYGDQQRLLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEML 293
Query: 259 SVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
++GF ED+E+IL N Q+++FSAT+P W+ ++ ++L+ + +TVDLVGD QK +
Sbjct: 294 NMGFVEDIEMILNHAKDNEKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKAS 353
Query: 316 DGIS 319
++
Sbjct: 354 AAVT 357
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 149/226 (65%), Gaps = 15/226 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS + + L +GI++LFPIQ + G+D+IGRA TG GKTLAF +PI++KI K N
Sbjct: 22 ISPETIGILHSKGITELFPIQALSFDAIYDGKDLIGRAPTGQGKTLAFALPIVEKIYKLN 81
Query: 166 EKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDA 224
+ R R PLCLVL+PTRELA+Q++++ APSL T+C++GG P Q AL GV+
Sbjct: 82 LRPPRRSRAPLCLVLSPTRELAQQIDEQIRMIAPSLRTVCLFGGAPFDPQEFALRRGVEF 141
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER------------ 272
VVGTPGRV+D ++R L L E+Q+ +LDEAD+ML +GF+EDVE +++
Sbjct: 142 VVGTPGRVLDHLERGTLQLGELQWFILDEADRMLDMGFSEDVEKVVDYAIKSGGETKGPR 201
Query: 273 -LPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLAD 316
+P Q ++FSAT+P W+R + KY+ + +TVDLV + ++ D
Sbjct: 202 IVPDRIQVLLFSATIPSWVREVMTKYMHPDKVTVDLVTEKEKASVD 247
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 136/212 (64%), Gaps = 3/212 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I AL RGI+ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
++ RGR P LVL PTRELA QV E AP L + VYGGT Q L
Sbjct: 61 QRL---EASRQRGRKPRALVLTPTRELALQVASEVAALAPHLKVVPVYGGTGYGKQKEEL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ L+LSEV+ VLDEAD+MLS+GF E+VE IL P +RQ
Sbjct: 118 QKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
+++FSAT+P W R L +Y+K+P+ +++V +
Sbjct: 178 TLLFSATLPTWARRLAERYMKSPVVINVVKEE 209
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 139/209 (66%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + + +I+ AL +GI PIQ A L A+ GRD+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFANFPLKPEILEALKAKGIFAPTPIQAAALPIALDGRDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ +E RGR P LVL PTRELA QV +E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSSE---RGRPPRALVLTPTRELALQVAEEVASVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P+ RQ
Sbjct: 118 ARGADVVVATPGRALDYLEQGVLDLSRVEIAVLDEADEMLSMGFEEEVERLLSATPKERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W R L+ +Y++ P+ +++V
Sbjct: 178 TLLFSATLPSWARKLSERYMRAPVLINVV 206
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+S DE +S ++S+++ A L +GI+ L+ IQ +P + G+D++GRARTG GKTL
Sbjct: 20 DASVDEN-HVSNFNLSKEVCARLETKGITSLYSIQAQCFQPILDGKDLVGRARTGCGKTL 78
Query: 152 AFGIPILDKIIKFNE-----KHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTIC 204
AF +PI++ I + N + +GR P+ +LAPTRELAKQV +F A L +IC
Sbjct: 79 AFVLPIVEVINRENPMPASGRRVQGRRPVVALLAPTRELAKQVHSDFQHIGQAFGLTSIC 138
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG P Q RAL G D V+GTPGRV D + R L+ +++F VLDEAD+ML++GF E
Sbjct: 139 VYGGAPYGEQERALRQGCDIVIGTPGRVKDHLDRKTLSFEKLRFRVLDEADEMLNMGFVE 198
Query: 265 DVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGI 318
D+E IL N Q+++FSAT+P W+ ++ ++L T+DLVGD QK + +
Sbjct: 199 DIETILNHAKDNANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSV 255
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 152/228 (66%), Gaps = 9/228 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S+ + A L ++G LF IQ LE A+ G+D++GRARTG GKTLAF +PI+
Sbjct: 83 LALDNFALSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIV 142
Query: 159 DKIIKF-----NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPI 211
+++ K N + +GR P+C+VLAPTRELAKQV +F S ++CVYGGTP
Sbjct: 143 EEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPY 202
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q L G D V+GTPGR+ D ++R L + +++F VLDEAD+ML++GF +DVE+IL
Sbjct: 203 REQEMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELIL- 261
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
+ + Q+++FSAT+PPW++ + ++LK + TVDLVGD QK + +
Sbjct: 262 KSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAV 309
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 147/230 (63%), Gaps = 9/230 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +S +A+L R I+ LFPIQ + G D+I +ARTGTGKTLAF +P+++K
Sbjct: 120 FSNFRLSPQTIASLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ N + GR P LV+APTRELAKQV ++F S P L T+CVYGGT Q A+
Sbjct: 180 LK--NTEFKAGRPPQVLVMAPTRELAKQVSEDFQASNPRLSTLCVYGGTAYWPQESAIRR 237
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL------ERLP 274
GVD +VGTPGR++D +++N LNLS+++ V+LDE D+ML +GFA+ VE IL +
Sbjct: 238 GVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPG 297
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
+N Q+++FSAT+P W+ KY+K+ + VDL+G K A + +I
Sbjct: 298 ENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAI 347
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 166/280 (59%), Gaps = 12/280 (4%)
Query: 66 SRPLDFKSSIAWQ---HAQSAVDDYVAYDDSSKDEGL----DISKLDISQDIVAALARRG 118
S P DF S+ A + A+ D + + +G I +SQ+ L R G
Sbjct: 15 SAPADFGSAAALELDDDAEVEADADAELESLAPQKGFVDQKPIEDFALSQETQRNLLRAG 74
Query: 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178
++ LFP+Q + M+G D++GR++TG+GKTLAF +PI++ I+ N K+ R NP LV
Sbjct: 75 VTHLFPVQTQSFDVMMRGADIMGRSKTGSGKTLAFALPIVETILA-NRKNTR--NPQALV 131
Query: 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
L PTRELA+QV E AP L T+ V GG + Q L G D +VGTPGR++DL+ +
Sbjct: 132 LLPTRELAQQVHDEVQRVAPQLRTVNVVGGVSYTVQENHLRRGADILVGTPGRIMDLVDK 191
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
+L+L +V VLDEAD ML GF E VE IL +P+ Q++M+SAT P W+ S+ K+L
Sbjct: 192 GSLSLDDVDVAVLDEADMMLKFGFQEAVETILGWVPEGGQTVMWSATFPKWVSSMAKKFL 251
Query: 299 KNPLTVDLVGDSDQKLADGISLYSIATSM--NMQKVENAL 336
K P+++DLVGD D ++ ++ +I + +Q +EN L
Sbjct: 252 KEPVSIDLVGDEDNQVPATVAHKAINAPVRDRIQVLENVL 291
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 150/230 (65%), Gaps = 9/230 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ L + +S ++V+AL ++GI LF IQ L+ A+ G+D++GRARTG GKTL
Sbjct: 75 DARTPNPLALENFSLSPEVVSALQKKGIDALFAIQAQTLDTALSGKDIVGRARTGCGKTL 134
Query: 152 AFGIPILDKIIKFNEK--HGR---GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTIC 204
AF +PI+++I K + GR GR P+ VL PTRELAKQV +F A +L T+C
Sbjct: 135 AFVLPIVEQINKSDPTPASGRRLQGRRPVVCVLCPTRELAKQVGADFDWVGQAFNLKTVC 194
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG P Q + L G D +VGTPGRV D + R L ++F VLDEAD+ML++GF +
Sbjct: 195 VYGGAPYRDQEQGLRSGCDIIVGTPGRVKDHLDRKNLKFDNLKFRVLDEADEMLNMGFVD 254
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQK 313
DVE IL ++ + Q+++FSAT+PPW++ + ++LK T+DLVG+ QK
Sbjct: 255 DVETIL-KVSGDIQTLLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQK 303
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 165/282 (58%), Gaps = 17/282 (6%)
Query: 51 IKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYD-----DSSKDEGLDISKLD 105
+ RF +R H S L + S+ + +S D V + SK + +
Sbjct: 52 VACRFGGASRR-HQCS--LKMQLSLPSEELESTKQDGVVIEAENATSESKHRDWSLERFP 108
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ AAL ++GI++L IQ GRD+IGR+ TGTGKT AFG+P+++++++
Sbjct: 109 LSEATAAALRKKGITELTEIQAITFNDMRSGRDVIGRSHTGTGKTFAFGVPLVERMVEAR 168
Query: 166 EKHGR-----GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRAL 218
+G GR+P LVL PTRELAKQV ++ L C YGG + Q AL
Sbjct: 169 VSNGSRRGAPGRSPCALVLTPTRELAKQVTEQLRLIGQPHGLAVDCFYGGASYTQQEEAL 228
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QN 276
G D +VGTPGR++D + R LNLS ++ VLDEAD+MLS+GFAEDVE I +++P +
Sbjct: 229 RRGFDVLVGTPGRILDHLDRGTLNLSNIRIAVLDEADEMLSLGFAEDVERIFQKMPPKEE 288
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
RQ+++FSAT+PPW++ + ++ + P+ D+VG ++ + A +
Sbjct: 289 RQTVLFSATIPPWVQKIAAQHQRAPVVHDVVGRTETRAAKNV 330
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 150/237 (63%), Gaps = 5/237 (2%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D+ + + + +S +A L +GI LFPIQ P +G+D++ +ARTG+GKT
Sbjct: 187 DEEADNSEFALKNFGVSATSIANLHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKT 246
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
L+F +P++++++K N + +GR P LV+APTRELA QV + F AP L +ICVYGG
Sbjct: 247 LSFALPVIERLLK-NPRSEKGRAPAVLVMAPTRELASQVHRVFESVAPQLASICVYGGVE 305
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q A+ G+D VVGTPGR+ID R L+L + ++LDEAD+ML VGF E+V+ I+
Sbjct: 306 YGPQELAMRKGLDVVVGTPGRLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIM 365
Query: 271 ERLP---QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSI 323
LP + ++FSATMP W+++LT KY + + + VDLV +DQ+ + I +I
Sbjct: 366 AGLPIGDAKPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAI 422
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 141/224 (62%), Gaps = 6/224 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ IS + L +GI LF IQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 45 LENFRISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIES 104
Query: 161 IIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
+ K + K G GR P LVLAPTRELAKQV +F + A L TICVYGG+ Q A
Sbjct: 105 LRKSSSGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNA 164
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ GVD VVGTPGR+ D + R LNL ++F VLDEAD+ML++GF E VE IL +
Sbjct: 165 MRRGVDIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTS 224
Query: 278 --QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
Q+++FSATMP W++ + ++LK N TVDLVGD K ++ +
Sbjct: 225 SVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNV 268
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 141/224 (62%), Gaps = 6/224 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ IS + L +GI LF IQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 82 LENFRISDAVKGMLREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIES 141
Query: 161 IIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRA 217
+ K + K G GR P LVLAPTRELAKQV +F + A L TICVYGG+ Q A
Sbjct: 142 LRKSSSGKKGYGRAPTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNA 201
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
+ GVD VVGTPGR+ D + R LNL ++F VLDEAD+ML++GF E VE IL +
Sbjct: 202 MRRGVDIVVGTPGRIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTS 261
Query: 278 --QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
Q+++FSATMP W++ + ++LK N TVDLVGD K ++ +
Sbjct: 262 SVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMKASNNV 305
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 150/249 (60%), Gaps = 15/249 (6%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D+ ++++ S I + L +G+ LFPIQ +P G D+I +ARTGTGKT
Sbjct: 108 DEETQEKIGAFSNFGIRPKTIEKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKT 167
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
L+F +P+++K +F +K GR P+ L LAPTRELAKQ+ + F P L T C+YGGT
Sbjct: 168 LSFVLPLVEKWQQFPQKSGR--QPIILALAPTRELAKQISEYFEAIGPHLSTTCIYGGTS 225
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q A+ G+D VVGTPGR++D I++N L+LS+++ VVLDE D+ML +GFAE VE IL
Sbjct: 226 YWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEIL 285
Query: 271 ------------ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADG 317
E P N Q+++FSAT+PPW+ KY++ L VDLVG K A
Sbjct: 286 GAAYKTGQPGDGEEAPNNPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATT 345
Query: 318 ISLYSIATS 326
+ +I S
Sbjct: 346 VQHLAINCS 354
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 9/240 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +S IS + L +GI LFPIQ + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSNFRISAPLREKLKAKGIEALFPIQATTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G R P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKNKRKMGYARAPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG + Q L GVD VVGTPGR+ D I+R ++LS +QF VLDEAD+ML +G
Sbjct: 205 SCCIYGGDSYTAQENKLRRGVDIVVGTPGRIKDHIERQNIDLSHLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ P Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDPTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
Length = 561
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 142/216 (65%), Gaps = 6/216 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ D+ + L + +++ AL+ G + PIQ+ + P ++GRD++G+A TGTGKT A
Sbjct: 4 NTTDDTSSFADLTLRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAA 63
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ + G G P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 64 FALPVLQRMTR----DGGGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RAL GVD VV TPGR +D I R L L +++ VVLDEAD+ML +GFAED+E IL
Sbjct: 120 IGRQLRALQQGVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ P+NRQ+++FSATMPP I + ++L +P+ +++
Sbjct: 180 QETPENRQTVLFSATMPPRINGIARRHLNDPVRIEM 215
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 140/215 (65%), Gaps = 19/215 (8%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-----KFNEKH 168
L+ +GI+ P+Q + P + GRD+IGR+RTGTGKTLAFG+P L +++ K N +
Sbjct: 1 LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60
Query: 169 GR--------GRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRAL 218
GR GR P +VL PTRELA+QVE E L + C +GG Q RAL
Sbjct: 61 GRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277
GVD +VGTPGRVID I R L+LSE VVLDEAD+ML++GFAEDVEVILE + +NR
Sbjct: 121 RQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR 180
Query: 278 ---QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
Q ++FSAT PPW++ + + Y ++ L++D+ G+
Sbjct: 181 EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGE 215
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + L +RGI LFPIQ E + G D++GRARTG GKTLAF +PIL+
Sbjct: 81 VTRFRISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPILES 140
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + K G GR P LVL PTRELA QV +F + A LD+ CVYGG Q
Sbjct: 141 LVNGLAKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASYQPQ 200
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I++ ++LS ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 201 EFALKRGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILGKVK 260
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
N+ Q+++FSAT+P W++ +++K+LK T+DLVG+ K + +
Sbjct: 261 DVNKVQTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNV 307
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 152/227 (66%), Gaps = 9/227 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + AL +RGI LFPIQ E + G D++GRARTG GKTLAF +PIL+
Sbjct: 65 VTRFRISEPLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILES 124
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + K G GR P LVL PTRELA QV ++F + A L++ CVYGG Q
Sbjct: 125 LVNGPAKASRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQ 184
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I++ ++LS ++F VLDE+D+ML +GF EDVE+IL ++
Sbjct: 185 EFALKRGVDIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVE 244
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
R Q+++FSAT+P W++++++++LK T+DLVG+ K + +
Sbjct: 245 DVRKVQTLLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNV 291
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 144/230 (62%), Gaps = 6/230 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + + L RG+S LF IQ G+D+IG+ARTGTGKT +F +P+++K
Sbjct: 168 FSNFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEK 227
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR P LVLAPTRELA QV K+F + L C YGG+ + Q+ A+
Sbjct: 228 LQSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRKLSVTCFYGGSSYNPQIDAIRS 287
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+LS++Q VVLDE DQML +GFAE VE IL + Q
Sbjct: 288 GIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQ 347
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSIA 324
Q+++FSAT P W+ + KY+++ + VDL+G QK A + +IA
Sbjct: 348 KPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIA 397
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 9/240 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK I + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRIPAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F E SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDEYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 136/211 (64%), Gaps = 3/211 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ S + ++ A+ +G + PIQ A + A++G+D++G+ARTGTGKTLAFGIPI
Sbjct: 1 MEFSAFTLRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P L+L PTRELA QV KE AP L +YGGT Q AL
Sbjct: 61 NRLDAARE---RGRAPRALILTPTRELALQVAKELEWLAPHLTITPIYGGTGYGKQAEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G D VV TPGR ID +++ L+LS ++ VLDEAD+MLS+GF E VE +LE P RQ
Sbjct: 118 KRGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
+++FSAT+P W R L+ +Y K + ++++ D
Sbjct: 178 TLLFSATLPTWARRLSERYQKAAIHINVIKD 208
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 9/240 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 142/229 (62%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 136 FSRFPISEETVKLLKARGVTYLFPIQVKTFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ + R+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 196 LQRDQEEMKKNRSPKVLVLAPTRELANQVAKDFQDITRKLSVACFYGGTPYQGQINHIRR 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K +DLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAI 364
>gi|397573970|gb|EJK48957.1| hypothetical protein THAOC_32204 [Thalassiosira oceanica]
Length = 900
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 142/227 (62%), Gaps = 19/227 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+K +SQD++ L+ +GI+ P+Q + P + GRD+IGR+RTGTGKTLAFGIP + ++
Sbjct: 209 TKSGVSQDVIDVLSHKGITNFTPVQAKAMRPVLAGRDVIGRSRTGTGKTLAFGIPAITRL 268
Query: 162 IKFNEKHG-------------RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV--Y 206
++ + +G RGR P +VL PTRELA+QV +E L +
Sbjct: 269 VEIAKDNGDAEVMRDGSIRMRRGRLPSMIVLCPTRELARQVGEELSAVCKPLGLFATVFH 328
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG Q R L G+D +VGTPGR+ID + R L+L E + VLDEAD+ML++GFAEDV
Sbjct: 329 GGVSYDPQSRNLRQGIDVLVGTPGRIIDHLDRGNLDLRECKVAVLDEADEMLNMGFAEDV 388
Query: 267 EVILERL----PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
EVILE + Q ++FSAT PPW+R + ++Y K+ L++D+ G+
Sbjct: 389 EVILEGAGNANDEKFQCLLFSATTPPWVREIGSRYQKDALSIDITGE 435
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 139/222 (62%), Gaps = 5/222 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ DIS L + G LFPIQ + M G D+ G+ARTG GKTL+F +P+++K
Sbjct: 118 LDNFDISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEK 177
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LV+APTRELA QV +EF + PSL + C+YGGT Q RA
Sbjct: 178 LLA-SPDTTRGRRPRVLVMAPTRELASQVWREFQKVGPSLASTCIYGGTDYEPQRRAFRN 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D VVGTPGR++D ++ AL L+ +Q++VLDEAD+ML VGF + VE +L E+ Q
Sbjct: 237 GLDVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQK 296
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
Q ++FSATMPP+I+S KY+ VD VG + + G+
Sbjct: 297 PQMILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGV 338
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 141/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 231
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 232 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 291
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT PPW+ + KY+K+ VDLVG QK A + +I
Sbjct: 292 NPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 340
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 9/240 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG I Q L GVD VVGTPGR+ D I+R L+ S +F VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSIPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYFKFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 143/229 (62%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP+++K
Sbjct: 135 FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEK 194
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 195 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQIDLIRS 254
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 255 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 314
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I
Sbjct: 315 NPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAI 363
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 144/230 (62%), Gaps = 8/230 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V DD S + D + I++ L ++G++ LFPIQ G+D++ +ARTGT
Sbjct: 79 VDIDDQSPEALGDFNNFRITEQTKVLLKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGT 138
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG 207
GKTL+F IP+++K+I N GR P LV+APTRELA QV K+F + + L ++C+YG
Sbjct: 139 GKTLSFAIPLVEKLI-MNRCKDYGRPPKVLVMAPTRELAIQVRKDFQDISQGLSSVCIYG 197
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
GTP Q R++ GVD VVGTPGR++D +++ L L V+ VVLDE DQML +GFA VE
Sbjct: 198 GTPYFQQERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVE 257
Query: 268 VIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT--VDLVGDS 310
IL E Q+++FSAT PPW+R+ + KY++ T VD +G S
Sbjct: 258 EILGYAYTEEREGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKS 307
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 132/209 (63%), Gaps = 3/209 (1%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S+ +AAL +GI+ PIQ L A+ G D++G ARTGTGKTLAF +PI +++
Sbjct: 13 ELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERL- 71
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
GR P LVLAPTRELA QV E AP L + VYGGT Q AL G
Sbjct: 72 --EPSRTPGRPPRALVLAPTRELALQVAGELEWVAPHLRIVTVYGGTGYGSQAAALKRGA 129
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VV TPGR ID + R L+L++V+ VLDEAD+MLS+GF E VE +L P RQ++MF
Sbjct: 130 DVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLMF 189
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
SAT+P W + L ++LK P V++V D +
Sbjct: 190 SATLPGWAKRLVGRHLKEPTVVNVVQDEE 218
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 160/269 (59%), Gaps = 21/269 (7%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAA 113
++ P DF S + ++Q D A + DS+ D + L + + I+ A
Sbjct: 10 GVNEPEDFNKSESQDNSQGVTKDTRAANTSEDTGAESQDSANDNSQGFAHLGLPEKILEA 69
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+A+ G +K PIQ+ + M+GRD++G A+TGTGKT AF +P+L +I + R+
Sbjct: 70 VAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI------DTKARH 123
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVLAPTRELA QV F A SL + + +YGG Q+ L G +VGTPG
Sbjct: 124 PQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP I
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALFSATMPNAI 243
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
R L+ +YL NP V + S+++ D I+
Sbjct: 244 RRLSKQYLDNPAEVTV--KSERRTNDNIT 270
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 140/216 (64%), Gaps = 9/216 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S +DEG L IS++++AA+ + G +K PIQ + M GRD++G A+TGTGKT
Sbjct: 92 ESGEDEGPGFESLGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVVGLAQTGTGKTA 151
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF +P+L K+ + R P LVLAPTRELA QV F E A L+ + VYGG
Sbjct: 152 AFALPVLSKV------DLKARTPQALVLAPTRELAAQVADSFQEFAGDLKGLEVLPVYGG 205
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGR+ID +KR +L++SE++++VLDEAD+ML++GF EDVE
Sbjct: 206 QSYGFQLSGLRRGAQIIVGTPGRIIDHLKRGSLDISELKYLVLDEADEMLNMGFQEDVER 265
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
ILE P+ +Q +FSATMP IR ++ +YL NP V
Sbjct: 266 ILEDTPEAKQVALFSATMPAGIRKISQQYLTNPAEV 301
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 141/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT PPW+ + KY+K+ VDLVG QK A + +I
Sbjct: 321 NPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 369
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 143/229 (62%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ V L RG++ LFP+Q P G+D+I +A+TGTGKT +F IP+++K
Sbjct: 872 FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR+P LVLAPTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 932 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKLTVACFYGGTPYNGQIDLIRS 991
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 992 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 1051
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDL+G QK A + +I
Sbjct: 1052 NPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAI 1100
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 160/269 (59%), Gaps = 21/269 (7%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAA 113
++ P DF S + ++Q D A + DS+ D + L + + I+ A
Sbjct: 10 GVNEPEDFNKSESQDNSQGVTKDTRAANTSEDTGAESQDSANDNSQGFAHLGLPEKILEA 69
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+A+ G +K PIQ+ + M+GRD++G A+TGTGKT AF +P+L +I + R+
Sbjct: 70 VAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI------DTKARH 123
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVLAPTRELA QV F A SL + + +YGG Q+ L G +VGTPG
Sbjct: 124 PQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP I
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALFSATMPNAI 243
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
R L+ +YL NP V + S+++ D I+
Sbjct: 244 RRLSKQYLDNPAEVTV--KSERRTNDNIT 270
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 141/230 (61%), Gaps = 6/230 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + + L RGIS LF IQ +G+D+IG+ARTGTGKTLAF IP+++K
Sbjct: 35 FSNFRISPNTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK 94
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P L LAPTRELA QV K+F + L C YGG+ + Q+ A+
Sbjct: 95 LQNDPDDKRRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRS 154
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ N L+LS+++ VVLDE DQML +GFAE VE IL Q
Sbjct: 155 GIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSET 214
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIA 324
N Q+++FSAT P W+ + +Y++ VDL+G QK A + +IA
Sbjct: 215 NPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIA 264
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 148/221 (66%), Gaps = 9/221 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF- 164
++ + L ++G LF IQ LE A+ GRD++GRARTG GKTLAF +PI++ + K
Sbjct: 88 LTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMAKMS 147
Query: 165 ----NEKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRAL 218
N + +GR P+C+VLAPTRELAKQV +F ++ ++CVYGG P Q L
Sbjct: 148 PMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYREQEMGL 207
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD V+GTPGR+ D ++R L +++++F VLDEAD+ML++GF +DVE IL + + Q
Sbjct: 208 RSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETIL-KSSGDVQ 266
Query: 279 SMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
+++FSAT+P W++ ++ ++LK N TVDLVGD QK + +
Sbjct: 267 TLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAV 307
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+SKL IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 131 VSKLRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 190
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I K + K G GR P LVL PTRELA +V +F + A L + C+YGG P + Q
Sbjct: 191 LINGPTKSSRKTGYGRTPSVLVLLPTRELACRVHADFEVYGGAMGLSSCCLYGGAPYNTQ 250
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD V+GTPGRV D I+R ++LS+++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 251 EIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVE 310
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
N+ Q+++FSAT+P W++ + ++LK + T DLVG++ K + +
Sbjct: 311 NVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNV 357
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 158/261 (60%), Gaps = 14/261 (5%)
Query: 80 AQSAVDDYVAYDDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG 136
+ SA DD SS ++ D ++ IS+ + +L +GI LFPIQ + + G
Sbjct: 100 SSSASDDDGEITASSDEDPADPNALTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDG 159
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK- 191
D++GRARTG GKTLAF +PIL+ ++ K R GR P +VL PTRELA QV
Sbjct: 160 NDLVGRARTGQGKTLAFVLPILESLVNGAHKASRRTEHGRTPSVIVLLPTRELANQVHAD 219
Query: 192 -EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
EF+ + L CVYGG+P Q AL GVD VVGTPGRV D I + LNL ++F V
Sbjct: 220 FEFYGATFGLSACCVYGGSPYRPQEMALRRGVDIVVGTPGRVKDFIVKGTLNLKNLKFRV 279
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLV 307
LDEAD+ML++GF +DVE+IL ++ Q+++FSAT+P W+ L+ ++LK + TVDLV
Sbjct: 280 LDEADEMLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLV 339
Query: 308 GDSDQKLADGISLYSIATSMN 328
G ++KL S+ +A N
Sbjct: 340 G--NEKLKASASVKHLALPCN 358
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 141/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFP+Q P G+D+I +ARTGTGKT +F IP+++K
Sbjct: 138 FSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEK 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ +++ RGR P LVL PTRELA QV K+F + L C YGGTP + Q+ +
Sbjct: 198 LQGESQERRRGRPPKVLVLCPTRELANQVAKDFKDITRKLTVGCFYGGTPYNGQIDLMRS 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 258 GIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K +DL+G QK A + +I
Sbjct: 318 NPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAI 366
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 150/236 (63%), Gaps = 9/236 (3%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+ KD+ IS IS+ + L +GI LFPIQ + + G D++GRARTG GKTL
Sbjct: 111 EEKKDDPNAISNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTL 170
Query: 152 AFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICV 205
AF +PIL+ +I K K G GR P LVL PTRELA QV +F + A L + C+
Sbjct: 171 AFVLPILESLINGPAKSARKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCL 230
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG P Q L GVD V+GTPGRV D I++ ++LS+++F VLDEAD+ML +GF ED
Sbjct: 231 YGGAPYQGQELKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVED 290
Query: 266 VEVILERLPQ-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
VE+IL ++ N+ Q+++FSAT+P W++ + K+LK + T DLVG++ K + +
Sbjct: 291 VEMILGKVENVNKVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKMKASTNV 346
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L +S IVA+LA GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L
Sbjct: 7 DFAELGVSGPIVASLAAAGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66
Query: 160 KIIKFNE-----KHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPIS 212
++ +E G R P LV+ PTRELAKQV ++ S S+D + +YGG
Sbjct: 67 RVTGKDEPGGETAEGDTRLPQALVVVPTRELAKQVAQDLVTASSQRSIDVVTIYGGKEFE 126
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GVD VVGTPGR++DL R L L++V+ VVLDEAD+ML +GF DVE I+
Sbjct: 127 PQINALKAGVDVVVGTPGRLLDLYGRKVLRLNKVRTVVLDEADEMLDLGFLPDVERIIAA 186
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
+P NRQ+M+FSATMP + +L +Y+ P + + D L + + + M K
Sbjct: 187 VPANRQTMLFSATMPGAVITLARRYMNRPTHIRAHDNEDLSLTGKNTTQYVYRAHAMDKS 246
Query: 333 E 333
E
Sbjct: 247 E 247
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 142/229 (62%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 144 FSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 203
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ + R+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 204 LQRDQEELKKTRSPKVLVLAPTRELANQVAKDFQDITRKLSVACFYGGTPYQGQINHIRR 263
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+
Sbjct: 264 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSED 323
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K +DLVG QK A + +I
Sbjct: 324 NPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAI 372
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 147/247 (59%), Gaps = 19/247 (7%)
Query: 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
+D S +E D K IS I +L RGI+ LFPIQ + G+D+IG+ARTGTGK
Sbjct: 43 HDSGSMEEKGDFKKFRISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGK 102
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209
TL+F +PI +K+IK + R P LVLAPTRELA Q+ EF + SL +C+YGG
Sbjct: 103 TLSFALPITEKLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGSLKVVCIYGGV 162
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P + Q L G+D V+GTPGR+ D I R L LS+++ VVLDE D+ML +GF + VE I
Sbjct: 163 PYAEQENHLRNGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEI 222
Query: 270 L------ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
L +R P Q+++FSATMP W +KY+K SD+K+ D I ++
Sbjct: 223 LSHAYVKDRHP---QTLLFSATMPKWALKTIDKYMK----------SDKKIVDLIGKDAL 269
Query: 324 ATSMNMQ 330
TS ++
Sbjct: 270 RTSTTVE 276
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 123 LTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 182
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 183 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 242
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 243 EMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 302
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W+ L+ ++LK + TVDLVG ++KL S+ +A N
Sbjct: 303 DATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVG--NEKLKASASVKHLALPCN 357
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 140/215 (65%), Gaps = 3/215 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++EG+ + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF
Sbjct: 63 EEEGIKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFA 122
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPI 211
+P L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+
Sbjct: 123 VPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAY 182
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I +
Sbjct: 183 GPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQ 242
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ P +RQ +FSATMP IR ++ +YL NP + +
Sbjct: 243 QTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISV 277
>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 642
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 138/207 (66%), Gaps = 3/207 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L + ++A+LA G K PIQ A + ++GRD++G A+TGTGKT AF +P L +
Sbjct: 22 FSELGLDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSR 81
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ + + +G + P LVLAPTRELA QV + F A P+ + VYGG+P Q+
Sbjct: 82 MAELADTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNG 141
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID I + +L+LS +Q+VVLDEAD+ML +GFAE+V+ ILE P+++
Sbjct: 142 LRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDK 201
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMP IR + ++YL+NP V
Sbjct: 202 QVALFSATMPRTIRRIASEYLRNPQEV 228
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 123 LTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 182
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 183 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 242
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 243 EMALRRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 302
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W+ L+ ++LK + TVDLVG ++KL S+ +A N
Sbjct: 303 DATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVG--NEKLKASASVKHLALPCN 357
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 138/229 (60%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +SQ+ V L RGI LFP+Q +P G+D+I +ARTGTGKT +F +P+++K
Sbjct: 24 FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVL PTRELA QV K+F L C YGG+P Q+ L
Sbjct: 84 LQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTKKLSVACFYGGSPYKEQLDLLKS 143
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D +VGTPGR+ D I+ + L LS V+ VVLDE D ML +GFAE VE IL +R +N
Sbjct: 144 GIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRGSEN 203
Query: 277 R-QSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
Q+++FSAT P W+ + KY+++ +DL+G Q+ A + +I
Sbjct: 204 NPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAI 252
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368
>gi|381162701|ref|ZP_09871931.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418460916|ref|ZP_13032000.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359739012|gb|EHK87888.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379254606|gb|EHY88532.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 575
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 137/207 (66%), Gaps = 5/207 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L + +++ AL+ G + PIQ+A + P + G D++G+A TGTGKT AF +P+L +I
Sbjct: 24 GELGLRPELLTALSDLGYEEPTPIQRAAIPPLLDGADVVGQAATGTGKTAAFSLPVLHRI 83
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ RG P LVL PTRELA QV + + L + VYGG P+ Q+R+L+
Sbjct: 84 ADVEQ---RGVAPSALVLVPTRELAAQVCEAMYRYGHRLGIRVVPVYGGQPMGRQLRSLE 140
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D + R +L+LS ++ VVLDEAD+ML +GFAED++ ILER P +RQ+
Sbjct: 141 TGVDVVVATPGRALDHLSRGSLDLSTLRMVVLDEADEMLDMGFAEDIDAILERTPDDRQT 200
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
M+FSATMPP I L +YL+ P ++L
Sbjct: 201 MLFSATMPPRIAGLVRRYLREPRRIEL 227
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 154 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLIEK 213
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTREL+ QV K+F + L C YGGTP + Q+ +
Sbjct: 214 LQGDTQPRARGRAPKILVLAPTRELSIQVSKDFSDITRKLTVACFYGGTPYNGQIDLIRR 273
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+LS+VQ VVLDE DQML +GFAE VE IL +
Sbjct: 274 GIDILVGTPGRIKDHLQNGRLDLSKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSED 333
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ + KY+K+ VDL+G QK A
Sbjct: 334 NPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAA 374
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 145/227 (63%), Gaps = 9/227 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISK IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 107 ISKYRISESLREKLKSKGIQSLFPIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILES 166
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQ 214
I K + K G GR P LVL PTRELA QV +F SL + C+YGG Q
Sbjct: 167 ITNGHAKESRKTGYGRPPSVLVLLPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQ 226
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+L GVD VVGTPGRV D I+R +NLS ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 227 EMSLKRGVDIVVGTPGRVKDHIERGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVE 286
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
Q+++FSAT+P W++ +++++LK + T+DLVG+ K + +
Sbjct: 287 DVSKVQTLLFSATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNV 333
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 106 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 165
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 166 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 225
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 285
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W++ L+ ++LK+ TVDLVG D+KL S+ +A N
Sbjct: 286 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVG--DEKLKASASVRHLALPCN 340
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 140/230 (60%), Gaps = 6/230 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++
Sbjct: 139 DFSNFPISEETVKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 RLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIR 258
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LP 274
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 NGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSE 318
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K VDLVG QK A + +I
Sbjct: 319 DNPQTLLFSATCPQWVYKVAKKYMKPRYEQVDLVGKMTQKAATTVEHLAI 368
>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD, partial [Actinomyces odontolyticus
F0309]
gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 502
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 9/252 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA++ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDEKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 322 SIATSMNMQKVE 333
I M KVE
Sbjct: 292 VIYRVHAMNKVE 303
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 152/259 (58%), Gaps = 10/259 (3%)
Query: 63 HAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKL 122
+ S P S A + + S ++ + + + EG S IS++ V L RG++ L
Sbjct: 148 NGFSHPKADSSDAASEESNSEIEQEIPVE---QKEGA-FSNFPISEETVKLLKARGVTFL 203
Query: 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182
FPIQ G+D+I +ARTGTGKT +F IP+++K+ + RGR P LVLAPT
Sbjct: 204 FPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGQLQDRKRGRAPQVLVLAPT 263
Query: 183 RELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
RELA QV ++F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+
Sbjct: 264 RELANQVSRDFSDITKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLD 323
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKY 297
LS+++ VVLDE DQML +GFAE VE IL + N Q+++FSAT P W+ ++ KY
Sbjct: 324 LSKLKHVVLDEVDQMLDMGFAEQVEDILCVAYKKDSEDNPQTLLFSATCPSWVFNVAKKY 383
Query: 298 LKNPLT-VDLVGDSDQKLA 315
+K+ VDL+G QK A
Sbjct: 384 MKSIYEQVDLIGKKTQKTA 402
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W++ L+ ++LK+ TVDLVG D+KL S+ +A N
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVG--DEKLKASASVRHLALPCN 351
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE IL
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|384567061|ref|ZP_10014165.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384522915|gb|EIF00111.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 577
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 138/205 (67%), Gaps = 6/205 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL+ G + PIQ+A + P ++G D++G+A TGTGKT AF +P+L +I
Sbjct: 30 LGLRPELLKALSDLGYEEPTPIQRAAIPPLLEGADVVGQAATGTGKTAAFSLPVLHRIAD 89
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ RG P LVL PTRELA QV + + L + VYGG P+ Q+R+L+ G
Sbjct: 90 LD----RGTEPSALVLVPTRELAAQVCEAMYRYGHHLGVRVVPVYGGQPMGRQLRSLESG 145
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL+R P +RQ+M+
Sbjct: 146 VDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDRTPDDRQTML 205
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
FSATMPP I + +YL+ P ++L
Sbjct: 206 FSATMPPRIAGMVRRYLREPRRIEL 230
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 106 LANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 165
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 166 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 225
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 285
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W++ L+ ++LK+ TVDLVG D+KL S+ +A N
Sbjct: 286 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVG--DEKLKASASVRHLALPCN 340
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L+ C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 369
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 250 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQLERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 410
>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
17982]
gi|153799192|gb|EDN81612.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 581
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 9/252 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA++ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDKKSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 322 SIATSMNMQKVE 333
I M KVE
Sbjct: 292 VIYRVHAMNKVE 303
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 146/226 (64%), Gaps = 3/226 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++ L GI++LFP+Q+ P QG+D++ R++TGTGKTLA+ +P+++K
Sbjct: 83 VDNLPIREETKERLKASGITRLFPVQQKCWNPIWQGKDVVVRSQTGTGKTLAYVLPLIEK 142
Query: 161 --IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+ F R +P +VLAPTRELA+QV +EF + +L C+YGG P Q L
Sbjct: 143 ASLGHFKAHTKRTGSPFIVVLAPTRELARQVFEEFGKLETTLLGACIYGGAPYRPQEEQL 202
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ +VGTPGRV D+ ++N L+L VQ +VLDEAD+ML +GFA ++E IL + N+Q
Sbjct: 203 RNCLSFLVGTPGRVADMCRKNLLHLELVQCIVLDEADRMLEIGFASELEQILSAVSGNKQ 262
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVG-DSDQKLADGISLYSI 323
+++FSAT+P W++ + K ++NP +DLVG D D K+ + Y+I
Sbjct: 263 TLLFSATLPTWVKQQSAKNMRNPAFLDLVGEDKDAKIPKDVKHYAI 308
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 143/224 (63%), Gaps = 3/224 (1%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + + ++ EG+ + L I ++AAL G K PIQ A + ++GRD++G A+T
Sbjct: 77 DPTSGEADTEAEGIRFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQT 136
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---T 202
GTGKT AF +P L ++ + ++ +G R LVLAPTRELA QV + F A +D
Sbjct: 137 GTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTV 196
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ VYGG+ Q+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GF
Sbjct: 197 LPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGF 256
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
AEDVE I ++ P +RQ +FSATMP IR ++ +YL NP + +
Sbjct: 257 AEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISV 300
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG+S LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 125 LTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 184
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 185 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 244
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 245 EMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 304
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W+ L+ ++LK + TVDLVG ++KL S+ +A N
Sbjct: 305 DATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVG--NEKLKASASVKHLALPCN 359
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 138 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 198 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 258 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 318 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 366
>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 822
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 137/219 (62%), Gaps = 15/219 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ Q ++ L+ +GI+ P+Q P M RD+IGR+RTGTGKTLAFG+P L +++ F
Sbjct: 144 LDQRVIDVLSEKGITSFTPVQAEAFGPVMARRDVIGRSRTGTGKTLAFGLPALTRLVTFT 203
Query: 166 EKHGR---------GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQ 214
++G+ GR ++L PTRELA+QV++E + A L +GG Q
Sbjct: 204 TENGKRDARGVMKSGRKVSMIILCPTRELARQVQEELSQVARPLGLFVEVFHGGVSYDPQ 263
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273
RAL GVD +VGTPGRVID I+R L+LSE VLDEAD+ML++GFA+DVEV+L+ +
Sbjct: 264 SRALRQGVDVIVGTPGRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADDVEVVLKNVG 323
Query: 274 ---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
PQ Q ++FSAT P W++ + +Y K+ L +D D
Sbjct: 324 SNNPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTAD 362
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 141/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG+S LF IQ G D+I +ARTGTGKT +F IP+++K
Sbjct: 160 FSNFRISKVTIDKLKARGVSYLFDIQVKTFNHVYDGEDVIAQARTGTGKTFSFAIPLVEK 219
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ K + + RGR P LVL PTRELA QV K+F + A + C YGG+ + Q+ A+
Sbjct: 220 LQKDSVEMARGRPPKVLVLTPTRELAIQVAKDFKDIAKRVSIACFYGGSSYNPQIDAIRN 279
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ N LNL++V+ VVLDE DQML +GFAE VE IL +
Sbjct: 280 GIDILVGTPGRIKDHIQNNKLNLTKVKHVVLDEVDQMLDMGFAEQVEEILGSSYKKDSDT 339
Query: 276 NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSI 323
N Q+++FSAT PPW+ + KY++ N +DL+G QK A + +I
Sbjct: 340 NPQTLLFSATCPPWVYEVAKKYMRPNCKHIDLIGKKTQKAATTVEHLAI 388
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L L +S+ ++ AL G + PIQ + +QG+D+IG+A+TGTGKT AFG+PI+
Sbjct: 6 LTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
++++ R LVL PTRELA QV +E + + TI +YGG I Q+R
Sbjct: 66 ERLVPGQ------RAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L +GVD V+GTPGR++D + R+ L+LS+V+ VVLDEAD+ML +GF ED+E IL+ P
Sbjct: 120 SLRFGVDVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMPP IR L +Y+++P+T+ +
Sbjct: 180 RQTLLFSATMPPEIRRLAGRYMRDPITISV 209
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + +L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 125 LTNFRISEPLRQSLRSKGIKALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILES 184
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ + L CVYGG+P Q
Sbjct: 185 LVNGANKASRRTEHGRTPSVLVLLPTRELANQVHADFEFYGATFGLSACCVYGGSPYRPQ 244
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGR+ D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 245 EMALRRGVDIVVGTPGRIKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVE 304
Query: 275 QNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W+ L+ ++LK + TVDLVG ++KL S+ +A N
Sbjct: 305 DATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVG--NEKLKASASVKHLALPCN 359
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L+ C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLNVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 71 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 190
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 191 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 251 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 299
>gi|380302038|ref|ZP_09851731.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 594
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 139/206 (67%), Gaps = 5/206 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ +DIV AL+ +GI FPIQ L A++GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 46 FADFDVREDIVEALSSKGIIHPFPIQSMTLPVALKGRDIIGQAKTGTGKTLGFGIPLLQS 105
Query: 161 IIKFNEKHGRGR---NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM 215
+ E + GR P LV+ PTRELA QV ++ +++ + + VYGG Q+
Sbjct: 106 TVAPGEDNPTGRVIGKPQALVVLPTRELAVQVAEDLQDASAKRPVRILTVYGGRAYEPQI 165
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GVD VVGTPGR+IDL+++ L+LS+V+ VLDEAD+ML +GF ED+E +L +P+
Sbjct: 166 EALEKGVDVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLRAVPE 225
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I +L +++ P
Sbjct: 226 KRQTMLFSATMPGPILALARRFMTQP 251
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTREL+ QV K+F + L C YGGTP + Q+ +
Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKKLTVACFYGGTPYNGQIDLIRR 460
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++VQ VVLDE DQML +GFAE VE IL +
Sbjct: 461 GIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDSED 520
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ + KY+K+ VDL+G QK A
Sbjct: 521 NPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAA 561
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 250 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQLERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 410
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 128 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 187
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 188 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 247
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 248 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 307
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 308 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 356
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 137 FSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIER 196
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 197 LQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 256
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 257 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 316
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 317 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 365
>gi|403274101|ref|XP_003928827.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Saimiri boliviensis
boliviensis]
Length = 722
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|399527936|ref|ZP_10767613.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361526|gb|EJN45278.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 588
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 150/252 (59%), Gaps = 9/252 (3%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
D S K E LD + ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGT
Sbjct: 52 DISGKGEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGT 111
Query: 148 GKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
GKTL FGIP+L+ +I +E+ P L++ PTREL KQV ++ E+A L T
Sbjct: 112 GKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTR 171
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL+ G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +G
Sbjct: 172 IVEIYGGVAFEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLG 231
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
F DVE +L R+P+NR +M+FSATMP + +L +++ P + DQ
Sbjct: 232 FLPDVETLLSRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQ 291
Query: 322 SIATSMNMQKVE 333
I M KVE
Sbjct: 292 VIYRVHAMNKVE 303
>gi|90076020|dbj|BAE87690.1| unnamed protein product [Macaca fascicularis]
Length = 353
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 37 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 96
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 97 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 156
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 157 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 216
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 217 NPQTLLFSATCPHWVFNVAKKYMKSTCEQVDLIGKKTQKTA 257
>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
8102]
Length = 598
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 145/230 (63%), Gaps = 12/230 (5%)
Query: 81 QSAVDDYVAYDDSSKDE-GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDM 139
Q + D + D+ + E G D S+ ++ LA +G S+ PIQKA M GRD+
Sbjct: 28 QGSADVFTTTIDAQQPESGFD--GFGFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDL 85
Query: 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHES 196
+G+A+TGTGKT AF +P+L+++ + P LVLAPTRELA QV K +
Sbjct: 86 VGQAQTGTGKTAAFALPLLERLASGQ------KTPQALVLAPTRELAMQVADSFKAYSAG 139
Query: 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
P L + VYGGT Q+ L GVD VVGTPGRV+D +++ L+ S ++ +VLDEAD+
Sbjct: 140 HPHLKVLAVYGGTDFRSQINTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADE 199
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
ML +GF +DVE ILE+LPQ RQ ++FSATMPP IR L+ +YLK+P V +
Sbjct: 200 MLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRYLKDPAEVTI 249
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 40 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 99
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 100 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 159
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 160 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 219
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 220 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 260
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 71 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 190
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 191 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 250
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 251 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 299
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 145/222 (65%), Gaps = 9/222 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 115 LSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILES 174
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I K + K G GR P LVL PTRELA QV +F + A L + C+YGG P Q
Sbjct: 175 LINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQGQ 234
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD V+GTPGRV D I++ ++LS+++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 235 EIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVE 294
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQK 313
N+ Q+++FSAT+P W++ + ++LK + T DLVG++ K
Sbjct: 295 NVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMK 336
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 141/230 (61%), Gaps = 6/230 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ + L RG+S LF IQ P G D++ +ARTGTGKT +F IP++++
Sbjct: 184 FSNFRISQVTINKLKARGVSYLFDIQVKTFNPVYDGEDVLAQARTGTGKTFSFAIPLVER 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ K + RGR P LVL PTRELA QV K+F + + L C YGG+ + Q+ A+
Sbjct: 244 LQKEGGETTRGRPPKVLVLTPTRELAIQVAKDFKDVSKKLAIACFYGGSSYNPQLDAIRN 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ + LNLS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNHKLNLSDLKHVVLDEVDQMLDMGFAEQVEEILSLSYKKDSDT 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIA 324
N Q+++FSAT PPW+ + KY++ VDL+G Q+ A + +IA
Sbjct: 364 NPQTLLFSATCPPWVYEVAKKYMRPGCKHVDLIGKKTQRAATTVEHLAIA 413
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 369
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 141 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 260
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 261 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 320
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 321 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 369
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRSQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIDRMRN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 369 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 409
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 144/227 (63%), Gaps = 9/227 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 121 LSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILES 180
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
+I + + K G GR P LVL PTRELA QV +F + A L + C+YGG P Q
Sbjct: 181 LINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQ 240
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
L GVD VVGTPGR+ D I+R ++ S ++F VLDEAD+ML +GF EDVE+IL ++
Sbjct: 241 EIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGKVE 300
Query: 275 --QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGI 318
Q+++FSAT+P W++ +++++LK L T DLVG+ K + +
Sbjct: 301 DVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNV 347
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|55733661|emb|CAH93507.1| hypothetical protein [Pongo abelii]
Length = 413
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 98 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 157
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 158 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 217
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 218 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 277
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 278 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 318
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 152/256 (59%), Gaps = 10/256 (3%)
Query: 66 SRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPI 125
S P + IA + + S ++ + + + EG S IS+ + L RG++ LFPI
Sbjct: 158 SGPDSNSNEIASEESNSELEQEIPVE---QKEGA-FSNFPISEGTIKLLKARGVTFLFPI 213
Query: 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185
Q G+D+I +ARTGTGKT +F IP+++K++ + RGR P LVLAPTREL
Sbjct: 214 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLLGELQDRKRGRAPQVLVLAPTREL 273
Query: 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE 245
A QV K+F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L++
Sbjct: 274 ANQVSKDFSDITKKLAVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTK 333
Query: 246 VQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+
Sbjct: 334 LKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKS 393
Query: 301 PLT-VDLVGDSDQKLA 315
VDL+G QK A
Sbjct: 394 TYEQVDLIGKKTQKTA 409
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 260 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 320 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 368
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFP+Q GRD+I +ARTGTGKT +F IP+++K
Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP +Q+ +
Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLAVACFYGGTPYGNQIERMRN 305
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE IL +
Sbjct: 306 GIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDSED 365
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K VDL+G QK A
Sbjct: 366 NPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTA 406
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 369 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTA 409
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQEAIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D ++GTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILIGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIDRMRN 368
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 369 GIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 428
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 429 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 469
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 410
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 145/237 (61%), Gaps = 8/237 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S ++AAL G + P+Q + + GRD I +A TGTGKT AF +PIL +
Sbjct: 15 AALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGL 74
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALD 219
+ + G P LVL PTRELA QV + H LD + +YGG PI Q+RAL
Sbjct: 75 VPY------GHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALR 128
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ VD +VGTPGR++D ++R L L +V+ V+LDEAD+ML +GF EDVE ILE +P+ RQ+
Sbjct: 129 HPVDVIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQT 188
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
+FSAT+PP IR LT +YL+ P+T+ + + + ++Y +A ++ + L
Sbjct: 189 ALFSATIPPRIRQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAKLEALSRIL 245
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 141/216 (65%), Gaps = 3/216 (1%)
Query: 89 AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTG 148
A D +++D ++L I ++AAL G K PIQ+A + ++GRD++G A+TGTG
Sbjct: 5 APDQNTQDTTPTFAELGIDARVLAALEAIGYEKPSPIQEATIPVLLEGRDVVGMAQTGTG 64
Query: 149 KTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICV 205
KT AF +P L ++ + + +G + LVLAPTRELA QV + F A L+ + V
Sbjct: 65 KTAAFAVPALSRLAELADLNGPSTSTQVLVLAPTRELALQVGEAFASYAVQLEDFTVLPV 124
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG+ Q+ L G VVGTPGRVID +KR +L L ++Q++VLDEAD+ML +GFAED
Sbjct: 125 YGGSSYGPQLAGLRRGAQVVVGTPGRVIDHLKRGSLKLDDLQYLVLDEADEMLRMGFAED 184
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
VE IL + P+++Q +FSATMPP IR + +YL+NP
Sbjct: 185 VETILSQTPEDKQVALFSATMPPAIRKIAQRYLRNP 220
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 308
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 309 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 368
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 369 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTA 409
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 214 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 273
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 274 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 333
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 334 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 393
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 394 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 434
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 138 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 197
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 198 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 257
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFA+ VE I+
Sbjct: 258 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFADQVEDIIHESYKTDAED 317
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 318 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 366
>gi|443291644|ref|ZP_21030738.1| Cold-shock DEAD box protein A [Micromonospora lupini str. Lupac 08]
gi|385885248|emb|CCH18845.1| Cold-shock DEAD box protein A [Micromonospora lupini str. Lupac 08]
Length = 581
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 6/207 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L + +++ AL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +P+L+++
Sbjct: 30 TELGLRPELLGALSALGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPLLNRM 89
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
H G +P+ LVL PTRELA QV + FH L + +YGG PI Q+RALD
Sbjct: 90 ----SAHRDGGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALD 145
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE P RQ+
Sbjct: 146 SGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPAERQT 205
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP I + ++L+ P+ +++
Sbjct: 206 VLFSATMPSRIDGMARQHLREPVRIEI 232
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 480
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 241 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 300
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 301 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 360
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 361 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 420
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 421 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 461
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 480
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 148/249 (59%), Gaps = 10/249 (4%)
Query: 73 SSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP 132
S A + + S ++ + + + EG S IS++ + L RG++ LFPIQ
Sbjct: 182 SEAASEESNSEIEQEIPVE---QKEGA-FSNFPISEETIKLLKGRGVTFLFPIQAKTFHH 237
Query: 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192
G+D+I +ARTGTGKT +F IP+++K+ + RGR P LVLAPTRELA QV K+
Sbjct: 238 VYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKD 297
Query: 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
F + L C YGGTP Q + G+D +VGTPGR+ D I+ L+L++++ VVLD
Sbjct: 298 FSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLD 357
Query: 253 EADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDL 306
E DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+ VDL
Sbjct: 358 EVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDL 417
Query: 307 VGDSDQKLA 315
+G QK A
Sbjct: 418 IGKKTQKTA 426
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 404
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 140/236 (59%), Gaps = 6/236 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ +GRD++ +ARTGTGKT +F IP+ +K
Sbjct: 184 FSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E+ RG P LVL PTRELA QV K+F + +L C YGGTP + Q+ +
Sbjct: 244 LQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDITRTLTVACFYGGTPYNGQIDLIRK 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L+++ VVLDE DQML +GFAEDVE I+
Sbjct: 304 GIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISGAYNRESED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMNMQ 330
N Q+++FSAT P W+ + KY+K VDL+G QK A + +I N +
Sbjct: 364 NPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQR 419
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 480
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 480
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 144/237 (60%), Gaps = 8/237 (3%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K+EG D I+ V L R + KLFP+Q + + G D+I +ARTGTGKTLAF
Sbjct: 86 TKEEG-DFENFRITAQTVTKLKARNVVKLFPVQYSTFDFVYDGWDVITQARTGTGKTLAF 144
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213
IP+++++ K RGR P+ +VLAPTRELA QV ++F + L + CVYGGTP
Sbjct: 145 SIPLVERLQKDGVSIKRGRAPVVIVLAPTRELAIQVYEDFKSISTKLTSFCVYGGTPYPP 204
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q A++ G+D +VGTPGR+ D ++ LNLSE++ VVLDE D+ML +G E V+ ILE
Sbjct: 205 QNDAINRGLDILVGTPGRIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAA 264
Query: 274 ------PQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSI 323
QN Q++ FSAT+P W+ KY+K P VD++G + A + +I
Sbjct: 265 YKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAI 321
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 6/214 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ DIS+ V L RG+S LFP+Q P ++G+D+I +ARTGTGKT +F IP+++K
Sbjct: 132 FANFDISKATVDLLKARGVSYLFPVQVKTFMPILEGKDVIAQARTGTGKTFSFAIPLIEK 191
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + ++ RGR+P LVL PTRELA QV ++F + L C YGGT + Q+ +
Sbjct: 192 LDRDPQERKRGRSPKVLVLTPTRELAMQVARDFKDITKKLTVACFYGGTAYNGQLDLIRN 251
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L++S+++ VVLDE DQML +GFAE VE IL +
Sbjct: 252 GIDILVGTPGRIKDHLQNNKLDISKLRHVVLDEVDQMLDMGFAEQVEEILVNSYKKDSED 311
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVG 308
N Q+++FSAT P W+ ++ KY+K+ DL+G
Sbjct: 312 NPQTLLFSATCPQWVYNVAKKYMKSKYEQFDLIG 345
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 139/212 (65%), Gaps = 7/212 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L + +++ ALA G + PIQ+A + P + G D++G+A TGTGKT AF +P+L +I
Sbjct: 19 SELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHRI 78
Query: 162 I-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+ + RG P +VL PTRELA QV + L + VYGG +S Q
Sbjct: 79 RDGERGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQ 138
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D + R +L+LS ++ VVLDEAD+ML +GFAED++ ILER P
Sbjct: 139 LRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERTP 198
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+M+FSATMPP I L +YL++P ++L
Sbjct: 199 DDRQTMLFSATMPPRIAGLVRRYLRDPRRIEL 230
>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 561
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 137/217 (63%), Gaps = 5/217 (2%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D+ D+ + L + +++ AL+ G + PIQ+ + P +GRD++G+A TGTGKT
Sbjct: 3 DAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTA 62
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGT 209
AF +P+L+++ + + RG P LVL PTRELA QV + H L + +YGG
Sbjct: 63 AFALPVLERLAQVEK---RGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQ 119
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI Q+R L+ GVD VV TPGR +D + R LNL ++Q VVLDEAD+ML +GFAED++ I
Sbjct: 120 PIGRQLRVLERGVDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTI 179
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
L P+ RQ+++FSATMPP I L ++L P + +
Sbjct: 180 LAETPKQRQTVLFSATMPPRIDKLARQHLTEPARITI 216
>gi|386774462|ref|ZP_10096840.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 596
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 138/206 (66%), Gaps = 5/206 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ DIV ALA +GI+ FPIQ L A++GRD+IG+A+TGTGKTL FGIP+L
Sbjct: 20 FADFDVRADIVKALAAKGITTPFPIQALTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQS 79
Query: 161 IIKFNEKHGRGR---NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM 215
+ E + R P LV+ PTRELA QV + ++ + + VYGG Q+
Sbjct: 80 SVAPGEPNPDDRPIGKPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQI 139
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GV+ VVGTPGR+IDL+++ L+LS+V+ VLDEAD+ML +GF ED+E +L+ +P
Sbjct: 140 EALEKGVEVVVGTPGRLIDLMRQKHLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVPA 199
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
NRQ+M+FSATMP I +L +++K P
Sbjct: 200 NRQTMLFSATMPGPIMALARRFMKQP 225
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 137/212 (64%), Gaps = 3/212 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 52 GVRFTDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 111
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D V YGG+ Q
Sbjct: 112 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 171
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I ++ P
Sbjct: 172 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTP 231
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++RQ +FSATMP IR ++ +YL NP + +
Sbjct: 232 ESRQVALFSATMPSQIRRMSKQYLNNPAEISV 263
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 248 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQIERMKN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
sp. ATCC 39149]
Length = 576
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
DE + L + +++ AL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +
Sbjct: 23 DEASAFTDLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFAL 82
Query: 156 PILDKIIKFNEKHGR-GRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPIS 212
P+L ++ GR G P+ LVL PTRELA QV + FH L + +YGG PI
Sbjct: 83 PLLHRM-----PDGRAGGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIG 137
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+RALD GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE
Sbjct: 138 RQLRALDLGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEH 197
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
PQ RQ+++FSATMP I + ++L +P+ + +
Sbjct: 198 APQQRQTVLFSATMPSRIDGMARQHLTDPVRIQI 231
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 139/213 (65%), Gaps = 10/213 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ LA +G S PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 64 FSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 119
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ GR + P LVLAPTRELA QV F A P L + VYGGT Q+ L GV
Sbjct: 120 -ESGR-KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGV 177
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGRV+D +++ L+ S + +VLDEAD+ML +GF +DVE ILE+LP+ RQ ++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLF 237
Query: 283 SATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKL 314
SATMPP IR L+ +YL +P V + D D KL
Sbjct: 238 SATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL 270
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 141/235 (60%), Gaps = 7/235 (2%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
+E + I + L RGI LFPIQ + + G+D++GRARTG GKTLAF +
Sbjct: 103 EENPSLDNFRICDETKKNLQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFAL 162
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
P+++ +++ RGR P + +APTRELAKQV EF + PSL T+C+YGG Q
Sbjct: 163 PVIELLLQDKRPRARGRAPRVVCMAPTRELAKQVATEFELTGPSLSTVCIYGGASYQSQN 222
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
A GVD +VGT GRVID I R L L +F++LDEAD ML +GF EDV+ + + Q
Sbjct: 223 NAFRSGVDILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQ 282
Query: 276 -------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
RQ+++FSAT+P W++ + +KY+K V+LV DSD + + + +I
Sbjct: 283 VKNESTGKRQTLLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAI 337
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 148/222 (66%), Gaps = 9/222 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + A L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 107 VTQFRISEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILES 166
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + G GR+P +VL PTRELA QV ++F + LD+ C+ GG Q
Sbjct: 167 LVNGPYKSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQ 226
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I RN ++L ++F VLDEAD+ML++GF +DVE IL ++
Sbjct: 227 EIALKRGVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVA 286
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQK 313
N+ Q+++FSAT+P W++++T+++LK + TVDLVG+ K
Sbjct: 287 DVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMK 328
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 158/258 (61%), Gaps = 12/258 (4%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S+ ++ L +G + PIQKA + M GRD++G+A+TGTGKT AF +P+L++I
Sbjct: 59 SEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERI----- 113
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVD 223
+ + RNP LVL PTRELA QV + F E +++ + VYGG+ Q+ +L GV+
Sbjct: 114 -NSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKRGVE 172
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+VGTPGRV+D I++ LN +Q +VLDEAD+ML +GF +D+E ILE+LP RQ ++FS
Sbjct: 173 IIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFS 232
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
ATMPP IR L+ +YL++P + + + +K A I + I T N K+E L+ N
Sbjct: 233 ATMPPEIRKLSKRYLRDPAEITI--KAKKKEAQLIRQHYI-TVQNSYKLEVLRRVLELNY 289
Query: 344 MQTAWLMLWLKVIIVSLC 361
+ + K I + L
Sbjct: 290 GEGVIIFARTKAITLKLA 307
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
+ Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 DPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 171/298 (57%), Gaps = 18/298 (6%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISKLDISQD--IVAALARRGISKLFPIQKAVLEPAMQGR 137
A+S A D+ + +E ++ LD+ D ++ ALA G PIQ A + P + G
Sbjct: 7 AESTTTAVTATDEQAGNENEPVTFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGN 66
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +P+L KI G R P LVLAPTRELA QV + F + A
Sbjct: 67 DVVGLAQTGTGKTAAFAVPVLSKI------DGESRTPQALVLAPTRELALQVSEAFGKYA 120
Query: 198 ---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
P++ + +YGG Q+ L G +VGTPGRVID +++ L+LS ++F+VLDEA
Sbjct: 121 VHMPNITVLPIYGGQSYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEA 180
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
D+ML++GF EDVE IL P+ +Q +FSATMPP IR + KYL +P+ + + K
Sbjct: 181 DEMLTMGFQEDVERILADTPEFKQVALFSATMPPAIRKIAKKYLHDPVEISV----KAKT 236
Query: 315 ADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
A G ++ + Q+ +AL L + V + ++++++ S ++ K R RG
Sbjct: 237 ATGSNITQRYLQVAHQRKLDALTRLLE-VEEFDGMIIFVRT--KSATEELAEKLRARG 291
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTREL QV K+F + L C YGGTP Q +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 239
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 240 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 299
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 300 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 340
>gi|452990332|emb|CCQ98554.1| putative ATP-dependent RNA helicase [Clostridium ultunense Esp]
Length = 535
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 133/204 (65%), Gaps = 9/204 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+ I Q I+ A+ G + PIQ A + ++G D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 17 EFKIDQAILKAIQEMGFEEPSPIQSACIPKILEGFDVIGQAQTGTGKTAAFGIPIVEKVT 76
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
E LVL PTRELA Q+ E + + + T+ +YGG I HQ+RAL
Sbjct: 77 SSPEVQ-------ALVLTPTRELAIQISGELRKISKFKRIKTLPIYGGQSIGHQIRALKQ 129
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV V+GTPGR+ID + R L L V+ VVLDEAD+ML +GF +D+E IL +P +RQ++
Sbjct: 130 GVQVVIGTPGRIIDHLNRKTLKLDHVRIVVLDEADEMLDMGFIDDIESILRSVPADRQTL 189
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+FSATMP IRSL N+Y+K+P TV
Sbjct: 190 LFSATMPAEIRSLANRYMKDPQTV 213
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
+ Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 DPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 140 FSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 199
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV +F + L C YGGTP Q+ +
Sbjct: 200 LQGGLQDKKRGRAPQVLVLAPTRELANQVSNDFSDITKKLSVACFYGGTPYGGQIDCIRS 259
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 260 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 319
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 320 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 360
>gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
Length = 604
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 139/216 (64%), Gaps = 9/216 (4%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
++ E L + L++ ++ + + G + PIQ A + ++GRD+IG A+TGTGKT AF
Sbjct: 5 TQAESLGFADLNLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAF 64
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+PIL KI K G +NP LVL PTRELA QV + F A P+ + +YGG
Sbjct: 65 ALPILAKI-----KSG-SKNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQD 118
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
+ Q+R L GV +VGTPGR++D + R +L+LSE+ VVLDEAD+ML +GF EDVE IL
Sbjct: 119 MRTQLRGLQRGVQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAIL 178
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++ P N Q +FSATMPP IR + + YLKNP+ V +
Sbjct: 179 KKTPGNHQIALFSATMPPPIRRVADTYLKNPVEVKI 214
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 144/223 (64%), Gaps = 8/223 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S+ + + L +GI LF IQ L P ++G+D++GRARTG GKTLAF +PI+
Sbjct: 3 LALDNFKLSEPVKSLLRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPIV 62
Query: 159 DKIIKFNEKHGR---GRNPLCLVLAPTRELAKQV--EKEFHESAPSLDTICVYGGTPISH 213
+++ G+ GR P +VLAPTRELAKQV + E++ A SL T+C+YGGT
Sbjct: 63 ERLAGGQGAGGKRAFGRAPSVVVLAPTRELAKQVAADFEYYAKAFSLTTVCLYGGTQYGP 122
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q L GVD V+GTPGRV D ++R L L++++F VLDE D+ML++GF EDVE IL
Sbjct: 123 QEGMLRRGVDVVIGTPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILNAG 182
Query: 274 --PQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQK 313
Q+++FSAT+P W++ +T ++LK TVDLVG K
Sbjct: 183 VDAATVQTLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMK 225
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 140/206 (67%), Gaps = 8/206 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + ++++ A+ G PIQ+ ++ AMQG D+IG+A+TGTGKT AFGIP+L K
Sbjct: 4 FNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I K N + L+LAPTRELA QV +E + A +++ I +YGG I Q+R L
Sbjct: 64 IEKGN------KAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
VV TPGR +D ++RN +NL+ +Q V+LDEAD+MLS+GF ED+E IL+ +P RQ
Sbjct: 118 KKNPQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+++FSATMP I+S++ K++K+P TV
Sbjct: 178 TLLFSATMPKRIQSVSQKFMKSPQTV 203
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 139/230 (60%), Gaps = 6/230 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS + L RG+S LF IQ + G D+I +ARTGTGKT +F IP+++K
Sbjct: 132 FSNFRISPVTINKLKARGVSYLFDIQVKTFDSVYDGEDVIAQARTGTGKTFSFAIPLVEK 191
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + RGR P LVL PTRELA QV K+F + L +C YGGT Q+ A+
Sbjct: 192 LQRDSAGPARGRAPKVLVLTPTRELAIQVAKDFKDIIKKLSIVCFYGGTSYMPQIDAIRN 251
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ N L+LS+++ VVLDE DQML +GFAE VE IL +
Sbjct: 252 GIDILVGTPGRIKDHLQNNKLDLSKLKHVVLDEVDQMLDMGFAEQVEEILASSYKKDADT 311
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIA 324
N Q+++FSAT PPW+ + KY++ VDL+G QK A + +IA
Sbjct: 312 NPQTLLFSATCPPWVYDVAKKYMRPKCKHVDLIGKKTQKAATTVEHLAIA 361
>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase [Halothermothrix orenii H 168]
gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
168]
Length = 527
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/201 (47%), Positives = 135/201 (67%), Gaps = 9/201 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS++I+ A+ G + PIQ + P + G+D+IG+A+TGTGKT AFGIP+L+KI
Sbjct: 7 SELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
R + P ++L PTRELA QV +E A SL T+ VYGG I Q++AL
Sbjct: 67 ------DTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV ++GTPGRV+D ++R LNLS + FVVLDEAD ML +GF +D++ IL+ +P +RQ
Sbjct: 121 KKGVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLK 299
++ FSAT+P I L+ +Y K
Sbjct: 181 TLFFSATIPETILDLSKRYQK 201
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +SQ+ + L R + LFP+Q +P G+D+I +ARTGTGKT +F IP+ +K
Sbjct: 39 FSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 98
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR+P LVL PTRELA QV ++F L C YGG P Q L
Sbjct: 99 LQSVSQDERRGRSPKVLVLVPTRELAIQVARDFKNLTRKLSVACFYGGAPYKAQFDLLKS 158
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ + L+LS V+ VVLDE D ML +GFAE VE IL +
Sbjct: 159 GIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSEN 218
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
N Q+++FSAT P W+ + KY+K+ VDL+G Q+ A + +I + Q+VE
Sbjct: 219 NPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCR-SSQRVE 276
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 148/222 (66%), Gaps = 9/222 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+++ IS+ + A L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 658 VTQFRISEPLKAKLREKGITSLFPIQATTFDTVYDGSDLVGRARTGQGKTLAFVLPILES 717
Query: 161 II----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K + G GR+P +VL PTRELA QV ++F + LD+ C+ GG Q
Sbjct: 718 LVNGPYKSSRVTGYGRSPSVIVLLPTRELADQVFEDFKFYGRTLGLDSCCLCGGLQYGPQ 777
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
AL GVD VVGTPGRV D I RN ++L ++F VLDEAD+ML++GF +DVE IL ++
Sbjct: 778 EIALKRGVDIVVGTPGRVKDHINRNNIDLRSLKFRVLDEADEMLNMGFVDDVEFILGKVA 837
Query: 275 Q-NR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQK 313
N+ Q+++FSAT+P W++++T+++LK + TVDLVG+ K
Sbjct: 838 DVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMK 879
>gi|444725163|gb|ELW65741.1| Nucleolar RNA helicase 2 [Tupaia chinensis]
Length = 1339
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 151/258 (58%), Gaps = 10/258 (3%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLF 123
A S P + A + + S + ++ + + EG S IS++ + L RG++ LF
Sbjct: 790 APSDPYSNSNEAASEESNSEAEQEISVE---QKEGA-FSNFPISEETIKLLKGRGVTFLF 845
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ G+D+I +ARTGTGKT +F IP+++K+ + RGR+P LVL PTR
Sbjct: 846 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGEMQDKKRGRSPQVLVLTPTR 905
Query: 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243
ELA QV ++F + L C YGGTP Q+ + G+D +VGTPGR+ D ++ L+L
Sbjct: 906 ELASQVSRDFSDITKKLSVACFYGGTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDL 965
Query: 244 SEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYL 298
++++ VVLDE DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+
Sbjct: 966 TKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYM 1025
Query: 299 KNPLT-VDLVGDSDQKLA 315
K VDL+G QK A
Sbjct: 1026 KPSYEQVDLIGKKTQKTA 1043
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 6/109 (5%)
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 159 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 218
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 219 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 267
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 146/238 (61%), Gaps = 27/238 (11%)
Query: 112 AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------FN 165
A LA+RGI + IQ + A GRD++G++RTGTGKTLAFG+P+++++ + ++
Sbjct: 100 AKLAQRGIDTMTEIQHLTFDAAHAGRDVLGKSRTGTGKTLAFGLPLVERLAERAREGDYD 159
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
K R R P LVLAPTRELAKQVE E H A + L T C +GG Q AL GVD
Sbjct: 160 PKK-RARGPAILVLAPTRELAKQVEAELHLLAQTHGLSTTCFHGGVSYGPQENALRRGVD 218
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--------- 274
+V T GRVID I R L+LS+ VVLDEAD+MLS+GFA+DVE I
Sbjct: 219 VLVATVGRVIDHIDRGNLDLSDAYHVVLDEADEMLSMGFADDVERIFSDFDLDDLLGAAP 278
Query: 275 ---------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
+ Q+++FSAT P W++ LT+KYL++P VD+VGD+ Q+ A ++ ++
Sbjct: 279 PPADAAAPLRRPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAATTVTHKAV 336
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S ISQ+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 217 FSNFPISQETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 276
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV +F + L C YGGTP Q+ +
Sbjct: 277 LQGGLQDKKRGRAPQVLVLAPTRELANQVSNDFSDITKKLSVACFYGGTPYGGQIDCIRS 336
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 337 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 396
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 397 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 437
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 141/222 (63%), Gaps = 7/222 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S + A L +GI LF IQ L + G D++GRARTG GKTLAF +PI+
Sbjct: 104 LAVDNFRLSDKVKALLREKGIEALFSIQAHTLNHLLDGFDLVGRARTGQGKTLAFVLPIV 163
Query: 159 DKIIKFN---EKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
++++ N + +GR P +VLAPTRELAKQV +F A +L T+C+YGG P+S
Sbjct: 164 ERLLAHNISATRRQQGRTPRVIVLAPTRELAKQVHADFENIGRAANLSTVCLYGGAPMSP 223
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + L G D VVGTPGRV D ++R L L ++ F VLDE D+ML++GF EDVE IL
Sbjct: 224 QEQILRRGCDVVVGTPGRVKDHLERGNLKLQDLMFRVLDECDEMLNMGFVEDVEKILNAG 283
Query: 274 PQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQK 313
+ Q+++FSAT+P W++ +T ++L+ N VDLVG K
Sbjct: 284 GDIKVQTLLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMK 325
>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 607
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 140/204 (68%), Gaps = 9/204 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ LA +G S+ PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 64 FSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 119
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ G+ + P LVLAPTRELA QV + F + P L + VYGGT Q+ AL GV
Sbjct: 120 -ESGQ-KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGV 177
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGRV+D +++ L+ S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLF 237
Query: 283 SATMPPWIRSLTNKYLKNPLTVDL 306
SATMPP IR L+ +YLK+P V +
Sbjct: 238 SATMPPEIRRLSKRYLKDPAEVTI 261
>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
Length = 607
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 140/204 (68%), Gaps = 9/204 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
S+ ++ LA +G S+ PIQKA M GRD++G+A+TGTGKT AF +P+L+++
Sbjct: 64 FSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 119
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ G+ + P LVLAPTRELA QV + F + P L + VYGGT Q+ AL GV
Sbjct: 120 -ESGQ-KTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGV 177
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGRV+D +++ L+ S ++ +VLDEAD+ML +GF +DVE IL++LP+ RQ ++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLF 237
Query: 283 SATMPPWIRSLTNKYLKNPLTVDL 306
SATMPP IR L+ +YLK+P V +
Sbjct: 238 SATMPPEIRRLSKRYLKDPAEVTI 261
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 144/231 (62%), Gaps = 10/231 (4%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V D++ + S+ ++ LA +G S PIQKA M GRD++G+A+TGT
Sbjct: 60 VTADEAKSEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGT 119
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTIC 204
GKT AF +P+L+++ + G+ + P LVLAPTRELA QV F A P L +
Sbjct: 120 GKTAAFALPLLERL-----ESGQ-KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLA 173
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGGT Q+ L GVD VVGTPGRV+D +++ L+ S + +VLDEAD+ML +GF +
Sbjct: 174 VYGGTDFRSQISTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFID 233
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKL 314
DVE ILE+LP+ RQ ++FSATMPP IR L+ +YL +P V + D D KL
Sbjct: 234 DVEWILEQLPKERQVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL 284
>gi|375102000|ref|ZP_09748263.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374662732|gb|EHR62610.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 578
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 135/209 (64%), Gaps = 6/209 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D L + +++ AL+ G + PIQ+A + + G D++G+A TGTGKT AF +P+L
Sbjct: 27 DFGALGLRPELLKALSDLGYEEPTPIQRAAIPTLLDGADVVGQAATGTGKTAAFSLPVLH 86
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
+I RG P LVL PTRELA QV + + L + VYGG P+ Q+R
Sbjct: 87 RIADLE----RGTEPSALVLVPTRELAAQVCEAMYRYGHHLGIRVVPVYGGQPMGRQLRN 142
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL+R P +R
Sbjct: 143 LETGVDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDRTPADR 202
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+M+FSATMPP I + +YL+ P ++L
Sbjct: 203 QTMLFSATMPPRIAGMVRRYLREPRRIEL 231
>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 582
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 146/232 (62%), Gaps = 9/232 (3%)
Query: 79 HAQSAVDDYVAYDDSSKD----EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM 134
H + AV A + SS E + D+ DIV ALA +GI+ FPIQ L A+
Sbjct: 7 HTEEAVSASPAVEQSSGAAAPVEERTFADFDVRTDIVEALAAKGITTPFPIQSLTLPVAL 66
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLAPTRELAKQVEK 191
+GRD+IG+A+TGTGKTL FGIP+L + E + R P LV+ PTRELA QV
Sbjct: 67 RGRDIIGQAKTGTGKTLGFGIPLLQNSVAPGEPNPADRPIGTPQALVVLPTRELAVQVAH 126
Query: 192 EFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ ++ + + VYGG Q+ AL+ GV+ VVGTPGR+IDL+++ L+LS+V+
Sbjct: 127 DLETASAKRPIRILTVYGGRAYEPQIEALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTA 186
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
VLDEAD+ML +GF ED+E +L+ +P RQ+M+FSATMP I +L +++K P
Sbjct: 187 VLDEADEMLDLGFLEDIEKLLQAVPVKRQTMLFSATMPGPIMALARRFMKQP 238
>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 529
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L+I +DI+ + G PIQ + G D+IG+A+TGTGKT AFGIP+L+KI
Sbjct: 10 LNIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPMLEKI-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDY 220
+ + + P L+LAPTREL+ QV E + + L +I +YGG PI Q++AL
Sbjct: 68 ----NPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQ 123
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV+ VVGTPGR++D I+R L L ++ +VLDEADQML +GF++D+E IL+ P RQ++
Sbjct: 124 GVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTV 183
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLV 307
MFSATMP I + KY+KNP V +V
Sbjct: 184 MFSATMPKEIEEIAKKYMKNPKKVKVV 210
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 137/204 (67%), Gaps = 8/204 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +I AL GI FPIQ+ L ++G D+IG+ARTGTGKTLAFGIP+L +I
Sbjct: 30 ELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRI- 88
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDY 220
+HG G+ P LVLAPTRELA QV + + L T + VYGG Q++AL
Sbjct: 89 ----EHG-GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRD 143
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GVD VVGTPGR++DL ++ L+LS++Q +VLDEAD+ML +GF D+E I+E +P RQ+M
Sbjct: 144 GVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTM 203
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+FSATMP I +L+ +YL P V
Sbjct: 204 LFSATMPGEIVALSRRYLNRPTNV 227
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 11/217 (5%)
Query: 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181
LFPIQ + M+G D IGRARTGTGKT AF IP+++ + K RG P LV+ P
Sbjct: 140 LFPIQAQTFDIIMEGVDCIGRARTGTGKTFAFAIPVVEMLNKKPAPTARG-APRVLVMLP 198
Query: 182 TRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
RELA QV F A +L +CVYGG PI Q+ AL GVD VVGTPGR++D+IKRN
Sbjct: 199 VRELAIQVAGNFKSLASRNLAVVCVYGGEPIYTQISALRRGVDVVVGTPGRIMDMIKRNE 258
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILER------LPQNRQSMMFSATMPPWIRSLT 294
L+LS+++ VVLDE D+ML +GFAE+V+ IL+ + N Q+++FSATMP W++ +
Sbjct: 259 LDLSKLEHVVLDEVDRMLDMGFAENVDEILQTRYNENDVESNPQTLLFSATMPDWVQKTS 318
Query: 295 NKYL-KNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330
KY+ KN +DLVG +++ I++ +A N Q
Sbjct: 319 QKYMKKNTRNIDLVG--RERVRTSITVQHLALQCNYQ 353
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 148/246 (60%), Gaps = 25/246 (10%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
ISK IS+ + L +GI LFPIQ + +QG D++GRARTG GKTLAF +PIL+
Sbjct: 45 ISKFKISEPLREKLKEKGIESLFPIQAMTFDIILQGCDLVGRARTGQGKTLAFVLPILES 104
Query: 161 II---------KFNEKHGRGRN-----------PLCLVLAPTRELAKQVEKEF--HESAP 198
+ K E +G R P LVL PTRELA QV +F + A
Sbjct: 105 VTNGKAKETNAKTKETNGNARESRKGGYGGPPKPSVLVLLPTRELACQVNADFEVYGGAM 164
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L + C+YGG P Q L+ GVD V+GTPGR+ D I R +++LS+++F VLDEAD+ML
Sbjct: 165 GLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLSQLKFRVLDEADEML 224
Query: 259 SVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLA 315
+GF EDVE+IL ++ Q+++FSAT+P W++++ ++LK + T DLVG++ K +
Sbjct: 225 RMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNTKMKAS 284
Query: 316 DGISLY 321
+ Y
Sbjct: 285 TSVRHY 290
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 142/227 (62%), Gaps = 9/227 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI+ LFPIQ + G D++GRARTG GKTLAF +PIL+
Sbjct: 120 LANFRISEPLKQKLKSKGINALFPIQATTFGLVLDGHDLVGRARTGQGKTLAFVLPILES 179
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELA QV EF+ A L T C YGG+ Q
Sbjct: 180 LVNGPHKATRRTDYGRLPSVLVLLPTRELANQVHADFEFYGGAFGLSTCCAYGGSHYRPQ 239
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D I + LNL ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 240 EMAMRKGVDIVVGTPGRVKDFIVKGTLNLKSLKFRVLDEADEMLNMGFVDDVELILGKVE 299
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
Q+++FSAT+P W++ L+ ++LK + TVDLVG+ K + +
Sbjct: 300 DVTKVQTLLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMKASSSV 346
>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
str. F0310]
Length = 598
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 155/265 (58%), Gaps = 10/265 (3%)
Query: 79 HAQSAVDDYVAYDDSSK-DEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAM 134
H ++ + D + K DE LD + ++ IV AL +GI+ FPIQ L PA+
Sbjct: 46 HPEAPAQEEATPDITDKGDEDLDKKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVE 190
D+IG+A+TGTGKTL FGIP+L+ +I +E+ P L++ PTREL KQV
Sbjct: 106 DRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVA 165
Query: 191 KEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
++ ++A L T + +YGG Q+ AL G D VVGTPGR+IDL+++ L+LS V+
Sbjct: 166 QDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVET 225
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
VVLDEAD+ML +GF DVE +L R+P+NR +M+FSATMP + +L +++ +P +
Sbjct: 226 VVLDEADEMLDLGFLPDVETLLGRVPENRHTMLFSATMPGPVVALARRFMVHPTHIRAQD 285
Query: 309 DSDQKLADGISLYSIATSMNMQKVE 333
DQ I M KVE
Sbjct: 286 PDDQNQTVNTVKQVIYRVHAMNKVE 310
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 117 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 176
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 177 LQGELQDRKRGRAPRVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 236
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 237 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 296
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+++ VDL+G QK A
Sbjct: 297 NPQTLLFSATCPHWVYNVAKKYMRSTYEQVDLIGKKTQKTA 337
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ + S++++ ++ +G S PIQKA + + GRD++G+A+TGTGKT AF +PIL++
Sbjct: 38 FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILER 97
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ K N H P LVLAPTRELA QV + F + P + +YGG+ +Q+
Sbjct: 98 LKK-NVGH-----PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINT 151
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S + +VLDEAD+ML +GF +DVE ILE+LP+ R
Sbjct: 152 LRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEER 211
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSATMP IR L+ KYL +P +
Sbjct: 212 QLVLFSATMPSEIRRLSKKYLNSPAEI 238
>gi|377574212|ref|ZP_09803243.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
gi|377537015|dbj|GAB48408.1| putative DEAD-box RNA helicase [Mobilicoccus pelagius NBRC 104925]
Length = 544
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 148/241 (61%), Gaps = 10/241 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ DIVAALA GI FPIQ L A+ G D+IG+A+TGTGKTL FG+P+LD+
Sbjct: 47 FADFDVHPDIVAALADAGIVTPFPIQAMTLPVALGGYDIIGQAKTGTGKTLGFGVPLLDR 106
Query: 161 IIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
++ F + GR P LV+APTRELA QV + +A + +YGG
Sbjct: 107 VVAPGDEGFEDLPHPGR-PQGLVVAPTRELANQVAGDLTRAASRRGIRVTTIYGGRAFEP 165
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GV+ VVGTPGR+IDL+++ LNL ++ +VLDEAD+ML +GF DVE +L +
Sbjct: 166 QIEALQKGVEVVVGTPGRLIDLMQQGHLNLHAIRTLVLDEADEMLDLGFLPDVEKLLAQT 225
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ-KLADGISLYSIATSMNMQKV 332
P +RQ+M+FSATMP + +L +Y+ P + + D D+ + I Y + + M KV
Sbjct: 226 PASRQTMLFSATMPGAVVTLARRYMTRPTHIRAISDDDEGQTVAAIDQY-VYRAHAMDKV 284
Query: 333 E 333
E
Sbjct: 285 E 285
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 161 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 220
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 221 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 280
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 281 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 340
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 341 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 381
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ + S++++ ++ +G S PIQKA + + GRD++G+A+TGTGKT AF +PIL++
Sbjct: 38 FSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILER 97
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ K N H P LVLAPTRELA QV + F + P + +YGG+ +Q+
Sbjct: 98 LKK-NVGH-----PQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINT 151
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S + +VLDEAD+ML +GF +DVE ILE+LP+ R
Sbjct: 152 LRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEER 211
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSATMP IR L+ KYL +P +
Sbjct: 212 QLVLFSATMPSEIRRLSKKYLNSPAEI 238
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 410
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 153/244 (62%), Gaps = 14/244 (5%)
Query: 82 SAVDDYVAYDDSSK---DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
S+ DD VA D+ + D+G L +S ++ A+ G +K PIQ+ + M G D
Sbjct: 111 SSQDDVVAQDNEQENKDDDGAGFGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGED 170
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
++G A+TGTGKT AF +PIL ++ + + R P LVLAPTRELA QV + F + A
Sbjct: 171 VVGLAQTGTGKTAAFALPILSRL------NLKSRKPQALVLAPTRELALQVAESFEDFAE 224
Query: 199 SL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255
+ + + +YGG P Q+ L G VVGTPGRVID +++ +L++SE++F+VLDEAD
Sbjct: 225 KMGGVNILPIYGGQPYGAQLSGLRRGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEAD 284
Query: 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ML++GF EDVE ILE P+++Q +FSATMP IR L+ +YL +P V + S Q+ A
Sbjct: 285 EMLNMGFQEDVERILEDTPEDKQVALFSATMPSAIRHLSKRYLNSPQEVTV--KSTQRTA 342
Query: 316 DGIS 319
+ I
Sbjct: 343 ENIE 346
>gi|396583527|ref|ZP_10484060.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395549007|gb|EJG16160.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 615
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 143/234 (61%), Gaps = 6/234 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 78 VTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 137
Query: 166 EKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ P L++ PTREL KQV ++ E+A L T + +YGG Q+ AL
Sbjct: 138 EEGYEDLLNPNQPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEALQ 197
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P+NR +
Sbjct: 198 RGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVPENRHT 257
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
M+FSATMP + +L +++ +P + DQ I M KVE
Sbjct: 258 MLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKVE 311
>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 528
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++KNP V +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKNPEHVKI 204
>gi|62898155|dbj|BAD97017.1| nucleolar protein GU2 variant [Homo sapiens]
Length = 363
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPT ELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTGELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ + KY+K+ VDLVG QK A
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAA 359
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 135/212 (63%), Gaps = 3/212 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 70 GVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 129
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D V YGG+ Q
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFA+DVE I ++ P
Sbjct: 190 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTP 249
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ +FSATMP IR ++ +YL NP + +
Sbjct: 250 ETRQVALFSATMPGQIRRMSKQYLNNPAEISV 281
>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 428
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 137/211 (64%), Gaps = 8/211 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + + +S ++ AAL + PIQ A++ A++GRD++G+ARTGTGKT AFGIPI+
Sbjct: 4 INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63
Query: 159 DKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+++ +HG RNP L+L PTRELA QV E + ++ + VYGG P+ QM
Sbjct: 64 ERL-----EHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQM 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L VVGTPGRVIDL+ R AL L ++ VVLDEAD+ML +GF D+E IL R P+
Sbjct: 119 EKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPE 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++ SAT+PP I L +Y++NP VD
Sbjct: 179 ERQTLLLSATVPPTIEKLAQRYMRNPEKVDF 209
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 205 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 264
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
++ RGR P LVL PTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 265 LLAELHDRKRGRAPQVLVLTPTRELANQVSRDFSDITKKLSVACFYGGTPYGGQIERIRN 324
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 325 GIDILVGTPGRIKDHLQNGKLELTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 384
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K VDL+G QK A
Sbjct: 385 NPQTLLFSATCPHWVYNVAKKYMKPTYEQVDLIGKRTQKAA 425
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 124/197 (62%), Gaps = 3/197 (1%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
AL +G S IQ A L A+ G D++G ARTGTGKTLAFG+PI +++ + RGR
Sbjct: 14 ALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIANRL---EPESARGR 70
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
P L+L PTRELA QV E AP + + VYGGT Q L G D VV TPGR
Sbjct: 71 APRALILTPTRELALQVAGELEWLAPEHNVVTVYGGTGYGKQASDLKRGADIVVATPGRA 130
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
+D K+ L LS V+ VLDEAD+ML+ GF EDVE++L PQ RQ+++FSAT+P W S
Sbjct: 131 VDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLLFSATLPRWAES 190
Query: 293 LTNKYLKNPLTVDLVGD 309
L ++L++PL ++ D
Sbjct: 191 LAARHLRDPLRANVTSD 207
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 21/268 (7%)
Query: 64 AISRPLDFKSSIAWQHAQSAVDDYVAYD----------DSSKDEGLDISKLDISQDIVAA 113
++ P DF S + ++Q D A + DS+ D L + I+ A
Sbjct: 10 GVNEPEDFNKSESQDNSQGVNQDTRAANTSEGTGAESKDSANDNSQGFEHLGLPDKILQA 69
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
+A+ G + PIQ + M+GRD++G A+TGTGKT AF +P+L ++ + R+
Sbjct: 70 VAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQL------DPQARH 123
Query: 174 PLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVLAPTRELA QV + F E+ ++ + +YGG Q+ L G +VGTPG
Sbjct: 124 PQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSGLRRGAQVIVGTPG 183
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
RVID +++ +L+LS++QF+VLDEAD+ML++GF EDVE ILE P +Q +FSATMP I
Sbjct: 184 RVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVALFSATMPNAI 243
Query: 291 RSLTNKYLKNPLTVDLVGDSDQKLADGI 318
R L+ +YL NP V + S+++ D I
Sbjct: 244 RRLSKQYLHNPAEVTV--KSERRTNDNI 269
>gi|375096567|ref|ZP_09742832.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374657300|gb|EHR52133.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 568
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 139/215 (64%), Gaps = 6/215 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +++ AL+ G + PIQ A + +QGRD++G+A TGTGKT AF +P+L +
Sbjct: 18 FAELGLRPELLRALSELGYEEPTPIQLAAIPTVLQGRDLVGQAATGTGKTAAFALPVLQR 77
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRAL 218
+ RG+ P LVL PTRELA QV + + L + +YGG P+ Q+RAL
Sbjct: 78 LPDGE----RGKAPSALVLVPTRELAAQVCEAMYRYGHHLGARVVPIYGGQPMGRQLRAL 133
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VV TPGR +D + R L+L+E++ VVLDEAD+ML +GFAED+E IL+ P+ RQ
Sbjct: 134 GQGVDVVVATPGRALDHLGRGTLSLAELRTVVLDEADEMLDMGFAEDIEAILQESPEQRQ 193
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
+M+FSAT+PP I + ++L+ P ++L +S +
Sbjct: 194 TMLFSATIPPRIAGMVRRHLREPARIELGRESSTR 228
>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 528
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 141/218 (64%), Gaps = 11/218 (5%)
Query: 94 SKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
SK+E D + D I+ +I AL+ +GI+ FPIQ L A+ GRD+IG+A+TGTGKTL
Sbjct: 35 SKNELADKTFADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTL 94
Query: 152 AFGIPILDKI-----IKF-NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTI 203
FG+P L K+ K+ E H +G +P +V+ PTREL KQV + +A S+
Sbjct: 95 GFGLPTLMKVHGPASAKYATEVHYQG-HPQAMVIVPTRELCKQVAADLRAAAKQTSVRIT 153
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
+YGG Q+ AL G D +VGTPGR+IDL+KR L L V VVLDEAD+ML +GF
Sbjct: 154 EIYGGAAFEPQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFL 213
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
DVE++L R+PQ RQ+M+FSATMP I +L +Y+K P
Sbjct: 214 PDVEILLSRVPQTRQTMLFSATMPGEIVALARRYMKQP 251
>gi|379738244|ref|YP_005331750.1| ATP-dependent RNA helicase, Cold-shock DEAD box protein A
[Blastococcus saxobsidens DD2]
gi|378786051|emb|CCG05724.1| ATP-dependent RNA helicase, Cold-shock DEAD box protein A
[Blastococcus saxobsidens DD2]
Length = 550
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 134/205 (65%), Gaps = 6/205 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +++ AL G + PIQ+ + P +GRD++G+A TGTGKT AF +P+L ++
Sbjct: 6 LGLRPELLNALTALGYEEPTPIQQEAIPPLAEGRDLLGQAATGTGKTAAFSLPVLQRL-- 63
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
H R P+ LVL PTRELA QV + H L + VYGG PI Q+R+L+ G
Sbjct: 64 --PAHRTDRPPVALVLVPTRELAVQVSEALHRYGRELGARVLPVYGGAPIVRQLRSLESG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VV TPGR +DL+ R AL L E+ VVLDEAD+ML +GFAED+E IL+ P+ RQ+++
Sbjct: 122 VDVVVATPGRALDLLNRGALQLGEIATVVLDEADEMLDMGFAEDLEAILDETPEQRQTVL 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
FSATMP + +L ++L++P+ + L
Sbjct: 182 FSATMPRRLDALARRHLRDPVRIAL 206
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 147/238 (61%), Gaps = 14/238 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 108 LANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 167
Query: 161 IIKFNEKH-----GRGRNPLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISH 213
++ N KH GR P LVL PTRELAKQV EF+ + L + CVYGG+
Sbjct: 168 LV--NGKHKASGADYGRPPSVLVLLPTRELAKQVHTDFEFYGATFGLSSCCVYGGSEYRP 225
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q + GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 226 QEMKIRKGVDIVVGTPGRVKDFVQKGTLNFKSLKFRVLDEADEMLNMGFVDDVELILGKV 285
Query: 274 PQ--NRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W+ L+ ++LK TVDLVG D+KL S+ +A N
Sbjct: 286 EDVTKVQTLLFSATLPDWVGKLSLRFLKPGKKTVDLVG--DEKLKASASVRHLALPCN 341
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 133/202 (65%), Gaps = 7/202 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +IS++I AL + G + IQ+ + A +G+D+IG+++TGTGKT AFGIPILD I
Sbjct: 5 TEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
++ N + LV+ PTRELA QV EF + + + I VYGG I Q++ L
Sbjct: 65 LQNNNHQIQ-----ALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLK 119
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
V V+GTPGR++D I+R + L V+FVVLDEAD+ML +GF ED+E IL + RQ+
Sbjct: 120 KKVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQT 179
Query: 280 MMFSATMPPWIRSLTNKYLKNP 301
M+FSATMP I SL+ KYLKNP
Sbjct: 180 MLFSATMPAEILSLSKKYLKNP 201
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 138/211 (65%), Gaps = 5/211 (2%)
Query: 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176
+G +KLF IQ P ++G+D++G+ARTG GKTL+F +PI++ ++K ++GRGR P
Sbjct: 17 KGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLK-EGRNGRGRAPRA 75
Query: 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI 236
L +APTRELA QV KEF + PSL + CVYGG P Q A+ G+D ++GTPGR+ D +
Sbjct: 76 LCMAPTRELAHQVGKEFADIGPSLASTCVYGGAPYMPQESAIRRGLDVIIGTPGRLKDHL 135
Query: 237 KRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI----LERLPQNRQSMMFSATMPPWIRS 292
+ L L+++++++LDEAD+ML GF E ++ I + + Q ++FSATMP +I S
Sbjct: 136 DKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPDFILS 195
Query: 293 LTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
Y+ N +TVD VG S + + G+ +I
Sbjct: 196 TVKNYMPNHVTVDTVGSSRNRTSKGVDHLAI 226
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 136/212 (64%), Gaps = 3/212 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P
Sbjct: 70 GVRFVDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPA 129
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQ 214
L ++ + ++ +G R LVLAPTRELA QV + F A +D + VYGG+ Q
Sbjct: 130 LSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQ 189
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFA+DVE I ++ P
Sbjct: 190 LAGLRRGAQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTP 249
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ +FSATMP IR ++ +YL NP + +
Sbjct: 250 ETRQVALFSATMPGQIRRMSKQYLNNPAEISV 281
>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 694
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 134/207 (64%), Gaps = 3/207 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++AAL G K PIQ A + ++GRD++G A+TGTGKT AF +P L +
Sbjct: 52 FADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 111
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRA 217
+ + ++ +G R LVLAPTRELA QV + F A +D V YGG+ Q+
Sbjct: 112 LAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAG 171
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID I + +L+LSE+Q++VLDEAD+ML +GFAEDVE I ++ P++R
Sbjct: 172 LRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDR 231
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMP IR ++ +YL +P +
Sbjct: 232 QVALFSATMPGQIRRMSKQYLNDPAEI 258
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 136/229 (59%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +S + L RG+ LFP+Q +P G+D+I +ARTGTGKT +F IP+ +K
Sbjct: 197 FSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 256
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR+P LVL PTRELA QV K+F L C YGGTP Q L
Sbjct: 257 LQSVSQDEKRGRSPKVLVLVPTRELAIQVAKDFKNLTRKLSVACFYGGTPYKAQFDLLKN 316
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL----ERLPQN 276
G+D +VGTPGR+ D I+ + L+LS V+ VVLDE D ML +GFAE VE IL ++ +N
Sbjct: 317 GIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSEN 376
Query: 277 R-QSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
Q+++FSAT P W+ + KY+K VDL+G Q+ A + +I
Sbjct: 377 SPQTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAI 425
>gi|354614919|ref|ZP_09032743.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353220726|gb|EHB85140.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 576
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 125/196 (63%), Gaps = 6/196 (3%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
ALA G S+ PIQ+A + P + GRD++G+A TGTGKT AF +P+L + RG
Sbjct: 30 ALAELGYSEPTPIQRAAVPPLLAGRDLVGQAATGTGKTAAFALPLLHHLADGE----RGT 85
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPG 230
P LVL PTRELA QV F L + VYGG P+ Q+RAL+ G D VV TPG
Sbjct: 86 TPRVLVLVPTRELAAQVCAAFDGYGRHLGVRVVPVYGGQPMGRQLRALEQGADVVVATPG 145
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290
R +D + R +L L + VVLDEAD+ML +GFAED++ IL+R P RQ+M+FSATMPP I
Sbjct: 146 RALDHLARGSLRLDGLDAVVLDEADEMLDMGFAEDIDAILQRTPDERQTMLFSATMPPRI 205
Query: 291 RSLTNKYLKNPLTVDL 306
L +YL +P ++L
Sbjct: 206 AGLVRRYLTDPERIEL 221
>gi|426364976|ref|XP_004049567.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Gorilla gorilla
gorilla]
Length = 633
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 135/220 (61%), Gaps = 6/220 (2%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I + RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP+++++ + E
Sbjct: 138 IKSHFTGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIK 197
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
+ R+P LVLAPTRELA QV K+F + L C YGGT Q+ + G+D +VGTP
Sbjct: 198 KSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNGIDILVGTP 257
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQNRQSMMFSA 284
GR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ N Q+++FSA
Sbjct: 258 GRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSA 317
Query: 285 TMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
T P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 318 TCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 357
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 131/208 (62%), Gaps = 4/208 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
+GL LDI + AA++ G PIQ A + P M GRD++G A+TGTGKT AF IP
Sbjct: 15 DGLTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIP 74
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
IL ++ + G R P LVLAPTRELA QV + F + P + + +YGG
Sbjct: 75 ILSRLEGAGDGSGP-RKPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGV 133
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L G +VGTPGRVID + R L++SE++F+VLDEAD+ML++GFAEDVE IL
Sbjct: 134 QLAGLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAET 193
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNP 301
P ++Q +FSATMP IR L +YL +P
Sbjct: 194 PDDKQVALFSATMPSAIRRLAQRYLNDP 221
>gi|440731079|ref|ZP_20911124.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
gi|440375088|gb|ELQ11802.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
Length = 653
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL +
Sbjct: 11 FADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ FN+ R P LVLAPTRELA QV + FH A P + VYGG P Q+ A
Sbjct: 71 L-DFNQ-----RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF +DVE +L++LP +R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAVLKKLPASR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMP I+ + YL +P V
Sbjct: 185 QVALFSATMPTAIKRIAQTYLNDPAEV 211
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+L++
Sbjct: 50 FSEFGFSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLER 109
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ G P LVLAPTRELA QV + F + P L+ + +YGG+ Q+ A
Sbjct: 110 L------QGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINA 163
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE ILE+LPQ R
Sbjct: 164 LRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQER 223
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q ++FSATMP IR L+ +YL+ P + +
Sbjct: 224 QVVLFSATMPNEIRRLSKRYLREPAEITI 252
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 145/232 (62%), Gaps = 11/232 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 IIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSI 323
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHI 338
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 139/229 (60%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVAWFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 143/227 (62%), Gaps = 7/227 (3%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K EG S D+S+ V L RG++ LFP+Q + +G+D+I +ARTGTGKT +F
Sbjct: 45 KKEGA-FSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSFA 103
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214
IP+++K+ + +++ RGR P LVLAPTRELA QV ++F + L C YGGT + Q
Sbjct: 104 IPLIEKLQRDSQERKRGRTPKVLVLAPTRELAMQVARDFKDVTRKLTVACFYGGTAYNGQ 163
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ + G+D +VGTPGR+ D ++ L +S ++ VVLDE DQML +GFA+ VE IL+
Sbjct: 164 LDLIRNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKYAY 223
Query: 275 Q-----NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
+ N Q+++FSAT P W+ + KY+K+ +DL+G +K A
Sbjct: 224 KKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTA 270
>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 585
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 136/214 (63%), Gaps = 6/214 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ ++G+ + L + +++ AL+ G + PIQ+ + P + G+D++G+A TGTGKT A
Sbjct: 14 ADAEDGIAFADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAA 73
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ G +P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 74 FALPLLQRM-PVGRAEG---DPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQP 129
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD+GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E IL
Sbjct: 130 IGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAIL 189
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
E P RQ+++FSATMP I L ++L +P+ +
Sbjct: 190 EHAPAGRQTVLFSATMPARIDGLARQHLTDPVRI 223
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 146/241 (60%), Gaps = 23/241 (9%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +++DI+ A+ G + IQK + ++G D+IG+A+TGTGKTLAFG P+++KI K
Sbjct: 9 LGLNEDILKAINELGFEEPSKIQKEAIPVVLEGFDVIGQAQTGTGKTLAFGAPVINKIKK 68
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
K +V+ PTRELA QV E + T+ VYGG PI Q+RA+ G
Sbjct: 69 STGKIS------SIVITPTRELAIQVNDEISRIGKYTRVRTLPVYGGKPIDRQIRAIKQG 122
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD +VGTPGRV+DLI+R ++LS V F+VLDEAD+ML +GF +D+E I+ P++RQ+M+
Sbjct: 123 VDVLVGTPGRVLDLIRRRVVDLSRVNFLVLDEADEMLDMGFIDDIEEIIRNCPEDRQTML 182
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQ 341
FSATMPP I+ L Y+K + IS+ + ++ + V F +KQ
Sbjct: 183 FSATMPPQIKRLAKSYMKEDMK-------------HISI--VKNTITVSTVSQYYFEIKQ 227
Query: 342 N 342
N
Sbjct: 228 N 228
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 134/222 (60%), Gaps = 6/222 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ ++
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 EGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
+N Q+++FSAT P W+ ++ KY+K +DLVG QK A
Sbjct: 360 ENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAA 401
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 136/205 (66%), Gaps = 8/205 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L +S+ ++ A+ G + PIQ+ + + GRD+I +A+TGTGKT AF +PI++++
Sbjct: 5 ADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
GR P LVLAPTRELA QV + FH+ DT + VYGG PI Q+RAL
Sbjct: 65 ------QPNGRRPQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+ V+ VVGTPGRV+D I+R L+LS V VV+DEAD+ML +GF EDVE IL+ +P RQ+
Sbjct: 119 HPVEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
+FSAT+P + +L +YL++P V
Sbjct: 179 ALFSATIPDRVAALARRYLRDPARV 203
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 134/222 (60%), Gaps = 6/222 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ ++
Sbjct: 240 RLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 EGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
+N Q+++FSAT P W+ ++ KY+K +DLVG QK A
Sbjct: 360 ENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAA 401
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS+ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 190 FSNFPISEATVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q +
Sbjct: 250 LHGELQDKKRGRPPQVLVLAPTRELASQVSRDFSDITKKLAVACFYGGTPYGGQFERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNAKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 370 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 410
>gi|357637041|ref|ZP_09134916.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
gi|357585495|gb|EHJ52698.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
Length = 518
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 148/220 (67%), Gaps = 17/220 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++++DI++A+ + G + PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLAEDILSAVEKAGFVEPSPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+K LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKIDVTNDK------VQALVIAPTRELAVQSQEELFRFGRGKKIKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ +P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K+P LT DLV
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKDPEHVKIAAKELTTDLV 214
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 141/237 (59%), Gaps = 6/237 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK +S++ + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 148 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 207
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
K+ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 208 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFAIK 267
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 268 DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE 327
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATSMNMQ 330
+N Q+++FSAT P W+ ++ KY++ +DL+G QK A + +I + + +
Sbjct: 328 ENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQK 384
>gi|374337605|ref|YP_005094310.1| cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
gi|372283710|emb|CCF01907.1| Cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
Length = 526
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++KNP LT DL+
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMKNPEHVKVAAKELTTDLI 214
>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
14684]
Length = 590
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 139/219 (63%), Gaps = 9/219 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
DD+S + + L + ++++ AL G + PIQ+ + P ++GRD++G+A TGTGKT
Sbjct: 9 DDAS--DTTTFADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKT 66
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGG 208
AF +PIL ++ G PL LVL PTRELA QV + H SL + +YGG
Sbjct: 67 AAFALPILQRMEPGRSAIG----PLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGG 122
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
PI Q+ AL GVD VVGTPGRV+D I RN L L E++ VVLDEAD+ML +GFAED+E
Sbjct: 123 QPIGRQLNALKRGVDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIES 182
Query: 269 ILERLPQ-NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
IL P RQ+++FSATMPP I + +L +P+ +++
Sbjct: 183 ILAETPDGGRQTVLFSATMPPRIDRIARAHLSDPVRIEI 221
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 8/235 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 222 DFSKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 281
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 282 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 341
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M VGF+E VE IL
Sbjct: 342 DGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDPE 401
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMN 328
+N Q+++FSAT P W+ ++ KY++ VDLVG QK A I++ +A N
Sbjct: 402 ENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAA--ITVEHLAIECN 454
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP++ K
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 249
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV ++F + L C YGGTP Q+ +
Sbjct: 250 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLAVACFYGGTPYGGQIERMRN 309
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 310 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 369
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 370 NPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTA 410
>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 574
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 137/214 (64%), Gaps = 6/214 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S+ DE L + +++AALA G + PIQ+ + P + GRD++G+A TGTGKT A
Sbjct: 10 STDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAA 69
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ + G +P+ LVL PTRELA QV + FH L T + +YGG P
Sbjct: 70 FALPLLQRM-SVDRPTG---DPVALVLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQP 125
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD GVD VV TPGR +D I R L L +V VVLDEAD+ML +GFAED+E IL
Sbjct: 126 IGRQLRALDSGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAIL 185
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
E P+ RQ+++FSATMP I + +L +P+ +
Sbjct: 186 EHAPEQRQTVLFSATMPARIDGMARAHLTDPIRI 219
>gi|22536941|ref|NP_687792.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
Length = 528
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKI 204
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 139/233 (59%), Gaps = 6/233 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK +S++ + L +G+S LFPIQ A G+D++ +ARTGTGKT +F IP+++
Sbjct: 180 DFSKFPLSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVE 239
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
K+ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 240 KLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVSCFYGGTPYQQQVFAIK 299
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGRV DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 300 DGIDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPE 359
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSIATS 326
+N Q+++FSAT P W+ ++ KY++ +DL+G QK A + +I +
Sbjct: 360 ENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECT 412
>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 585
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 136/214 (63%), Gaps = 6/214 (2%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ ++G+ + L + +++ AL+ G + PIQ+ + P + G+D++G+A TGTGKT A
Sbjct: 14 ADAEDGIAFADLGLRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAA 73
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L ++ G +P+ LVL PTRELA QV + FH L + +YGG P
Sbjct: 74 FALPLLQRM-PVGRADG---DPVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQP 129
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+RALD+GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E IL
Sbjct: 130 IGRQLRALDHGVDVVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAIL 189
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
E P RQ+++FSATMP I L ++L +P+ +
Sbjct: 190 EHAPAGRQTVLFSATMPARIDGLARQHLTDPVRI 223
>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406709269|ref|YP_006763995.1| ATP-dependent RNA helicase [Streptococcus agalactiae GD201008-001]
gi|424049656|ref|ZP_17787207.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648929|gb|EIM70418.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406650154|gb|AFS45555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae GD201008-001]
Length = 528
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKI 204
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 141/235 (60%), Gaps = 8/235 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 190 DFSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 249
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 250 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 309
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 310 DGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 369
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSIATSMN 328
+N Q+++FSAT P W+ ++ KY++ VDLVG QK A I++ +A N
Sbjct: 370 ENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAA--ITVEHLAIECN 422
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI H + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------HTEDQTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKDPEHVKI 204
>gi|399524825|ref|ZP_10765330.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
gi|398373862|gb|EJN51687.1| DEAD/DEAH box helicase [Atopobium sp. ICM58]
Length = 609
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 169/302 (55%), Gaps = 14/302 (4%)
Query: 45 PRHDDIIKSRFSAGTREFHAISRPLDFKSSIAW----QHAQSAVDDYVAYDDSSKDEGLD 100
P HD+ ++ A T + A + +++ + + + A AV++ E LD
Sbjct: 11 PTHDNDATTQSEA-TTQASAQASSVEYSAGVVRLGNIKPAAPAVEEATPDITDKGGENLD 69
Query: 101 ---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+ ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+
Sbjct: 70 KKSFADFGVTDPIVDALDDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPV 129
Query: 158 LDKIIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPI 211
L+ +I +E+ P L++ PTREL KQV ++ ++A L T + +YGG
Sbjct: 130 LEDVIAPDEEGYEDLLNPNQPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAF 189
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L
Sbjct: 190 EPQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLA 249
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331
R+P+NR +M+FSATMP + +L +++ +P + DQ I M K
Sbjct: 250 RVPENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNK 309
Query: 332 VE 333
VE
Sbjct: 310 VE 311
>gi|405982153|ref|ZP_11040477.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
gi|404390944|gb|EJZ86010.1| hypothetical protein HMPREF9240_01483 [Actinomyces neuii BVS029A5]
Length = 515
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 143/236 (60%), Gaps = 11/236 (4%)
Query: 88 VAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
V D + + E L++ K +S I ALA GI+ FPIQ L A++G D+IG+
Sbjct: 20 VQADITDEGEALELHKKTFADFGVSASICQALAEEGITHPFPIQALTLPVALKGNDIIGQ 79
Query: 143 ARTGTGKTLAFGIPILDKIIKFNE----KHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198
A+TGTGKTL FGIP L++I+ E K P L++ PTRELAKQV ++ +A
Sbjct: 80 AKTGTGKTLGFGIPALEQIVGPQEDGYEKLLNAGCPQALIILPTRELAKQVARDLKVAAK 139
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
S+ +YGG Q++AL+ G D VVGTPGR+IDL+K L LS V+ VVLDEAD+
Sbjct: 140 NRSVRITQIYGGVAFEPQLKALEKGTDLVVGTPGRLIDLLKHGKLKLSGVKVVVLDEADE 199
Query: 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
ML +GF DVE +L R P R +M+FSATMP + +L +Y+ +P + +DQ
Sbjct: 200 MLDLGFLPDVETLLSRTPAGRHTMLFSATMPGEVIALARRYMSHPTHIRAQDPADQ 255
>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase [Salinispora tropica CNB-440]
gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
Length = 579
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+ S+ DE L + +++AALA G + PIQ+ + P + GRD++G+A TGTGKT
Sbjct: 13 EPSTDDEATAFVDLGLRDELLAALAALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKT 72
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGG 208
AF +P+L ++ NP+ LVL PTRELA QV + FH L + +YGG
Sbjct: 73 AAFALPMLQRMPANRSTT----NPVALVLVPTRELAVQVSEAFHRYGKELGARVLPIYGG 128
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
PI Q+RALD GVD VV TPGR +D I R L L +V VVLDEAD+ML +GFAED+E
Sbjct: 129 QPIGRQLRALDAGVDVVVATPGRALDHIARGTLRLGDVGTVVLDEADEMLDMGFAEDIEA 188
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
ILE P+ RQ+++FSATMP I + +L +P+ +
Sbjct: 189 ILEHAPEQRQTVLFSATMPARIDGMARAHLTDPIRI 224
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 142/239 (59%), Gaps = 7/239 (2%)
Query: 83 AVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGR 142
A D+ + + + EG S IS++ + L RG++ LFPIQ G+D+I +
Sbjct: 157 AADEPQQHLTAEQKEGA-FSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVIAQ 215
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202
ARTGTGKT +F IP+++K+ + + RGR P LVL PTRELA QV ++F + L
Sbjct: 216 ARTGTGKTFSFAIPLIEKLQRDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDITKKLTV 275
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
C YGGT + Q+ + G+D +VGTPGR+ D I+ LNL+ +Q VVLDE DQML +GF
Sbjct: 276 ACFYGGTAYNGQINHIRNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDEVDQMLDMGF 335
Query: 263 AEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
AE VE IL + N Q+++FSAT P W+ + KY+K VDL+G QK A
Sbjct: 336 AEQVEEILSVAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTA 394
>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 528
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 130/205 (63%), Gaps = 9/205 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
IS DI A+ G PIQ+ V+ ++G D+IG+A+TGTGKT AFGIP+L+K+
Sbjct: 7 FQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEKVTS 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG 221
R L+L PTRELA QV E + + + +YGG I HQ++AL G
Sbjct: 67 -------DRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALKRG 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGRV+D + R L L V ++LDEAD+ML +GF ED+E IL+++ NRQ+M+
Sbjct: 120 VQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTML 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
FSATMPP IR L+NKY+ NP V +
Sbjct: 180 FSATMPPPIRKLSNKYMNNPKQVTI 204
>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 659
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 133/210 (63%), Gaps = 5/210 (2%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L ++ ++ AL G + PIQ + + GRD+IG+A TGTGKT AF +P+
Sbjct: 89 GVRFADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPM 148
Query: 158 LDKIIKFNEKHG-RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
L ++ + E+ G RG PL LVLAPTRELA QV + L + VYGG PI Q
Sbjct: 149 LQRLAQ--ERRGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQ 206
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GVD VV TPGR IDLI R AL+L E++ VVLDEAD+ML +GF ED+E IL+ P
Sbjct: 207 LGALKRGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATP 266
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+++FSATMP I L YL +P+ V
Sbjct: 267 DTRQAVLFSATMPRRIEVLARTYLTDPVLV 296
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 140/214 (65%), Gaps = 8/214 (3%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
SK E L++ + I+AAL G + PIQK + A++G D+IG+A+TGTGKT A
Sbjct: 13 ESKPEITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAA 72
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTP 210
FGIPI+ KI NEK R+ LV++PTREL QV E + + + + VYGG P
Sbjct: 73 FGIPIIQKI---NEKD---RHIQALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQP 126
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
I Q+R+L G+ V+GTPGR++D I+R ++L V F+VLDEAD+ML +GF +D+E I+
Sbjct: 127 IERQIRSLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENII 186
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+ +P RQ+M+FSATMP I S++ KY++ P V
Sbjct: 187 KNVPPERQTMLFSATMPRPILSISKKYMRAPKVV 220
>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|339301744|ref|ZP_08650830.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|417005047|ref|ZP_11943640.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|421146787|ref|ZP_15606490.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|341576860|gb|EGS27268.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|401686494|gb|EJS82471.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 528
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKI 204
>gi|410594336|ref|YP_006951063.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
gi|410517975|gb|AFV72119.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
Length = 516
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKI 204
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 137/225 (60%), Gaps = 11/225 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI+Q+I A+A G + PIQ + ++G+D+IG+A+TGTGKT AF IPIL+KI
Sbjct: 9 LDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPILEKI-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R+ +VL PTRELA QV +E + A + T+ +YGG PI Q++AL
Sbjct: 67 ----DPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKALKG 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV ++GTPGR ID IKR + V+ VVLDEAD+ML +GF ED+E ILE +P+ RQ+
Sbjct: 123 GVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQTT 182
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
FSATMP I LT KY P + +V + + I Y I T
Sbjct: 183 FFSATMPKAILELTKKYQNEPEHIKVV--RKELTVENIKQYYIET 225
>gi|380512805|ref|ZP_09856212.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 128/195 (65%), Gaps = 9/195 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL ++ F + R
Sbjct: 3 AVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRL-DFAQ-----R 56
Query: 173 NPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + FH A P + VYGG P Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LSE++ +VLDEAD+ML +GF +DVE +L++LP++RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPESRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTV 304
I+ + YL +P V
Sbjct: 177 IKRIAQTYLNDPAEV 191
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 137/216 (63%), Gaps = 3/216 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S ++EG + L + +++AL G K PIQ+ + P + G D++G A+TGTGKT
Sbjct: 121 ESHEEEGTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTA 180
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG
Sbjct: 181 AFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGG 240
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE
Sbjct: 241 SPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVET 300
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
ILE P +Q +FSATMP IR + +YL +P V
Sbjct: 301 ILEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEV 336
>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
UCN34]
Length = 526
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K+++NP LT DLV
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLV 214
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 134/221 (60%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S I + V RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSHFKIYNNTVNLFTGRGVTFLFPIQARTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR+P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGELQDRKRGRSPQVLVLAPTRELANQVSKDFSDITKKLAVACFYGGTPYGGQIERMRN 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEDILSVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K VDL+G QK A
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKPTYEQVDLIGKKTQKTA 404
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + +IS+ ++ A+ G PIQ+ V+ ++G D+IG+A+TGTGKT AFGIPIL
Sbjct: 2 MTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPIL 61
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+K+ R +N ++L PTRELA QV E + + + T+ VYGG I Q++
Sbjct: 62 EKL-------KRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GVD VVGTPGRV+D + R L+LS++ VLDEAD+ML +GF ED+E I++ +
Sbjct: 115 QLKRGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMPP IR L+NKY+ +P V +
Sbjct: 175 RQTLLFSATMPPPIRKLSNKYMNSPEQVTI 204
>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase [Stackebrandtia nassauensis DSM 44728]
gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
DSM 44728]
Length = 557
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 134/206 (65%), Gaps = 4/206 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + + VAAL+ GI++ F IQ+ + AM+G D+IGRA TGTGKTL FG+P+L+
Sbjct: 30 FTDLGVRAETVAALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLET 89
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRAL 218
+ E G P LV+ PTREL QV ++ + + + + +YGG Q+ AL
Sbjct: 90 VTSAAE--GADGRPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEAL 147
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV+ VVGTPGR++DL+K L L V VLDEAD+ML +GFAEDVE +L LP+ RQ
Sbjct: 148 RTGVEIVVGTPGRLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQ 207
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+M+FSATMP I SL+ K+LK P+T+
Sbjct: 208 TMLFSATMPDAIVSLSRKFLKQPMTI 233
>gi|392429044|ref|YP_006470055.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
gi|419776490|ref|ZP_14302412.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|383845901|gb|EID83301.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|391758190|dbj|BAM23807.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
Length = 514
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +K +S +++A + + G + PIQ+ + AM+G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNKFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------NTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K+P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKDPTHVKI 204
>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853567|ref|YP_006355811.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 551
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 148/232 (63%), Gaps = 14/232 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
+NRQ+++FSATMP I+ + K++KNP + + + + AD I Y + T
Sbjct: 173 ENRQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTK 222
>gi|386850704|ref|YP_006268717.1| Cold-shock DEAD box protein A [Actinoplanes sp. SE50/110]
gi|359838208|gb|AEV86649.1| Cold-shock DEAD box protein A [Actinoplanes sp. SE50/110]
Length = 569
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 138/220 (62%), Gaps = 9/220 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+S D G + L + +++ AL G + PIQ+ + P + G D++G+A TGTGKT A
Sbjct: 7 NSTDGGF--AGLGLRPELLRALTDLGYEEPTPIQREAITPLVAGHDLVGQAATGTGKTAA 64
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTP 210
F +P+L + G P LVL PTRELA+QV + H L+ + VYGG P
Sbjct: 65 FALPLLQSLTP-----GSADTPTALVLVPTRELAEQVSQAVHRYGRDLNVRVLPVYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
IS Q++ L GVD VVGTPGRV+D I+R L L ++ VVLDEAD+ML +GFAED+E IL
Sbjct: 120 ISRQLQVLRRGVDVVVGTPGRVLDHIERETLRLDAIRTVVLDEADEMLDMGFAEDIEAIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
P RQ+++FSATMPP I ++ ++L++PL + + D+
Sbjct: 180 AETPAERQTVLFSATMPPRIDAIARRHLRDPLRIRMGRDT 219
>gi|325977801|ref|YP_004287517.1| DEAD/DEAH box helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337311|ref|YP_006033480.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279947|dbj|BAK27521.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 526
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K+++NP LT DLV
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLV 214
>gi|345009475|ref|YP_004811829.1| DEAD/DEAH box helicase [Streptomyces violaceusniger Tu 4113]
gi|344035824|gb|AEM81549.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
Tu 4113]
Length = 559
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 135/212 (63%), Gaps = 6/212 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + + L + +++ ALA G + PIQ+ + P + GRD++G+A TGTGKT AF +P
Sbjct: 8 EQIGFADLRLRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALP 67
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I + G G P LVL PTRELA Q + H L T + VYGG PI Q
Sbjct: 68 VLQRI----SQDGGGAEPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQ 123
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D I R L L ++ +VLDEAD+ML +GFAED++ ILE P
Sbjct: 124 LRALERGVDVVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTP 183
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I ++ ++L+ P+ + +
Sbjct: 184 ADRQTVLFSATMPARIDAMARRHLRGPVRIQI 215
>gi|421532550|ref|ZP_15978908.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
gi|403642219|gb|EJZ03081.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
Length = 516
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++SQDI++A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI H L++APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------HTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAPVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKI 204
>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
SK11]
gi|385837379|ref|YP_005875009.1| cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|414073651|ref|YP_006998868.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
cremoris SK11]
gi|358748607|gb|AEU39586.1| Cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|413973571|gb|AFW91035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 551
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 148/232 (63%), Gaps = 14/232 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------NAENPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
+NRQ+++FSATMP I+ + K++KNP + + + + AD I Y + T
Sbjct: 173 ENRQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKTK 222
>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 461
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 155/246 (63%), Gaps = 18/246 (7%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L I ++IV L GI + PIQ+ + A+QG+D+I +A+TGTGKT AF +PIL KI K
Sbjct: 8 LGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQKINK 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
N+K + L+LAPTRELA Q+ E + A LD + VYGG + Q+ L G
Sbjct: 68 -NQK-----DVQALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKGG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
+ V+ TPGR++D ++R ++L V +VLDEADQML++GF E+VE I+++ PQNRQ M+
Sbjct: 122 MHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLML 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS--------MNMQKVE 333
+SAT+P IR+LTN+Y+KNP+ + + S++ D I + T+ M+M K E
Sbjct: 182 YSATIPKGIRALTNRYMKNPVEIRI--HSNKVTLDEIKQLVVETTDRHKQEALMHMIKQE 239
Query: 334 NALFSL 339
N ++
Sbjct: 240 NPFLAI 245
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 134/209 (64%), Gaps = 9/209 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L + +I+ AL G PIQ A + P ++GRD++G+A+TGTGKT AF +P+L +
Sbjct: 15 FSALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTAAFALPVLSR 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I + + K P LVLAPTRELA QV + F A P + +YGG Q++A
Sbjct: 75 IERDSNK------PQALVLAPTRELAIQVAEAFQRYAAHMPGFHILPIYGGQSYGPQLQA 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV +VGTPGRVID + R +L+LSE++F+VLDEAD+ML +GF +DVE +LE P R
Sbjct: 129 LRRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRMGFIDDVEKVLEATPPTR 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q +FSATMP IR + ++LK P+ V +
Sbjct: 189 QVALFSATMPSQIRKIAQQHLKTPVEVTI 217
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 140/235 (59%), Gaps = 17/235 (7%)
Query: 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK--- 167
V L GI+ LFPIQ A M+G+D+I RARTGTGKTL+F +P+ +++++ E+
Sbjct: 3 VEKLKAGGITSLFPIQSATFNHVMEGKDLIARARTGTGKTLSFILPVHEQMLRLKEEGEL 62
Query: 168 --HGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
GR P CL+L+PTRELAKQ+ K +A + VYGG + Q +AL GVD
Sbjct: 63 DTRKYGRTPSCLILSPTRELAKQIAKVLEMVAADGFSVLTVYGGVAYAEQGQALRKGVDW 122
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--------ERLPQN 276
VVGTPGRVID ++R L L+ V++ VLDEAD+ML++GF + V+ I E P++
Sbjct: 123 VVGTPGRVIDFMERGQLKLNNVRYFVLDEADEMLNIGFKDAVDKIFKGVMGEEAESKPEH 182
Query: 277 RQSMMFSATMPPWIRSLTNKYL--KNPLTVDLV-GDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P WI T KY N VDLV G Q+ A I I N
Sbjct: 183 VQTLLFSATIPDWIAQTTEKYFDKNNTAHVDLVSGQQGQETATRIEHLCIPCPWN 237
>gi|428182996|gb|EKX51855.1| hypothetical protein GUITHDRAFT_102470 [Guillardia theta CCMP2712]
Length = 589
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 145/241 (60%), Gaps = 10/241 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
I IS+ + AL+ +GI LFPIQ A + +G D+I RARTGTGKTLAF +P+ +K
Sbjct: 139 IRNFRISEKTIKALSEQGIQTLFPIQVATFDIIYEGYDLIARARTGTGKTLAFVLPVHEK 198
Query: 161 IIKFNEK-HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
+++ + + RGR P LV+ PTREL QV + + SL+ VYGG PI Q AL
Sbjct: 199 LMRSRGQINSRGRAPEALVMVPTRELCLQVTRVWKSLGGSLEIQSVYGGAPIRQQQIALS 258
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ---- 275
G+D V+GTPGR++DL R +L L ++F+VLDEADQML +GF +D+E I+ +
Sbjct: 259 DGIDVVIGTPGRILDLKSRGSLRLDRIKFLVLDEADQMLEIGFKDDMEEIIRSVCGDAQA 318
Query: 276 ---NRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330
+ Q+++FSAT+P W++ + YL+ VDLV K A I IA ++ +
Sbjct: 319 SNLDHQTLLFSATVPSWVQEIARNYLRADRRKDVDLVKHETLKTAPKIKHLCIACGVSAR 378
Query: 331 K 331
+
Sbjct: 379 R 379
>gi|443471730|ref|ZP_21061785.1| Cold-shock DEAD-box protein A [Pseudomonas pseudoalcaligenes KF707]
gi|442901875|gb|ELS27614.1| Cold-shock DEAD-box protein A [Pseudomonas pseudoalcaligenes KF707]
Length = 558
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 136/212 (64%), Gaps = 9/212 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I +++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL +I
Sbjct: 9 AALGIHPNVLAAISAVGYEEPSPIQSQSIPVILAGHDMIGQAQTGTGKTAAFALPILSRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P L+ I VYGG P+ Q++AL
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYAKQMPGLNVIAVYGGAPMGPQLKAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR+ D ++R+ L+ VQ +VLDEAD+ML +GF ED+EVI E LP++RQ
Sbjct: 123 RQGAQVIVATPGRLCDHLRRDERLLTTVQQLVLDEADEMLKLGFMEDLEVIFEALPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
S++FSAT+PP IRS+ ++LK+P V + +
Sbjct: 183 SVLFSATLPPSIRSIAERHLKSPQHVKIAAKT 214
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 149/245 (60%), Gaps = 12/245 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D++ D S+ ++ LA +G PIQ+A M GRD++G+A+TGTGKT
Sbjct: 36 DAATDARSGFDGFGFSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTA 95
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF +P+L+++ G P LVLAPTRELA QV + F A P L+ + +YGG
Sbjct: 96 AFALPLLERL------QPEGPGPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGG 149
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+ Q+ +L GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE
Sbjct: 150 SDFRSQIHSLKRGVDVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEW 209
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + +K A I I T N
Sbjct: 210 ILDQLPEERQVVLFSATMPAEIRRLSKRYLREPAEITI--KTQEKEARRIRQRCI-TLQN 266
Query: 329 MQKVE 333
K+E
Sbjct: 267 SHKLE 271
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + AM GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ D I R L L EVQ +VLDEAD+ML++GF +D+ ILE +P +R
Sbjct: 117 LKNKPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDR 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+++FSATMPP IR + ++K+P V +
Sbjct: 177 QTLLFSATMPPAIRKIAETFMKDPEIVKI 205
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 152/246 (61%), Gaps = 13/246 (5%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++S+K+E + S+ ++ L +G + PIQKA M GRD++G+A+TGTGKT
Sbjct: 50 EESTKEES-GFAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKT 108
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYG 207
AF +P+L+++ GR P LVLAPTRELA QV F A P L+ + +YG
Sbjct: 109 AAFALPLLERL------EGRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYG 162
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ Q+ L GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE
Sbjct: 163 GSDFRSQIHTLKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVE 222
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + + A I SI T
Sbjct: 223 WILDQLPEERQVVLFSATMPNEIRRLSKRYLQEPAEITI--KTKDREAKRIRQRSI-TMQ 279
Query: 328 NMQKVE 333
N K+E
Sbjct: 280 NSHKIE 285
>gi|290580897|ref|YP_003485289.1| ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449971807|ref|ZP_21814550.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|450060032|ref|ZP_21843592.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|450067851|ref|ZP_21846836.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|450093968|ref|ZP_21856845.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|450150739|ref|ZP_21876730.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|450166956|ref|ZP_21882509.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449171557|gb|EMB74214.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|449202498|gb|EMC03410.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|449207793|gb|EMC08456.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|449216747|gb|EMC16840.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|449233184|gb|EMC32266.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|449239040|gb|EMC37773.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
Length = 517
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 152/233 (65%), Gaps = 12/233 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328
RQ+++FSATMP I+ + K++K P V +V + + D + Y I N
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIV--AKELTTDLVDQYYIRVKEN 224
>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 732
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 139/216 (64%), Gaps = 3/216 (1%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D +++EG+ + L + ++AAL G K PIQ+ + ++G D++G A+TGTGKT
Sbjct: 54 DKAEEEGVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTA 113
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGG 208
AF +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG
Sbjct: 114 AFALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGG 173
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
+P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE
Sbjct: 174 SPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEK 233
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
ILE P ++Q +FSATMP IR + +YL +P V
Sbjct: 234 ILEGTPDSKQVALFSATMPNSIRKIAQQYLNDPREV 269
>gi|406659253|ref|ZP_11067391.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
iniae 9117]
gi|405577362|gb|EKB51510.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
iniae 9117]
Length = 543
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 142/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQ 214
+KI R + + LV+APTRELA Q ++E + VYGG+ I Q
Sbjct: 61 NKI--------RTDDNIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++KNP V +
Sbjct: 173 EERQTLLFSATMPAPIKQIGVKFMKNPEHVQI 204
>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
Length = 606
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 151/255 (59%), Gaps = 12/255 (4%)
Query: 82 SAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIG 141
S D + S + + S+ ++ L +G + PIQKA M GRD++G
Sbjct: 40 SDADSEATSEGESAESASGFAGFGFSEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVG 99
Query: 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---P 198
+A+TGTGKT AF +P+L+++ GR P LVLAPTRELA QV F A P
Sbjct: 100 QAQTGTGKTAAFALPLLERL------DGRSNTPRVLVLAPTRELAMQVADSFKAYAAGHP 153
Query: 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258
L+ + +YGG+ Q+ AL GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML
Sbjct: 154 HLNVLAIYGGSDFRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEML 213
Query: 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
+GF +DVE IL++LP+ RQ ++FSATMP IR L+ +YL+ P + + + + A I
Sbjct: 214 RMGFIDDVEWILDQLPEERQVVLFSATMPNEIRRLSKRYLREPAEITI--KTKDREAKRI 271
Query: 319 SLYSIATSMNMQKVE 333
SI T N K+E
Sbjct: 272 RQRSI-TLQNAHKIE 285
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 141/216 (65%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ + ++ R P +VLAPTRELA QV E ++ L + +YGGT I
Sbjct: 63 PLLNKL-ELSQ-----RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L+NP+T+D+ G
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLRNPITIDVAG 212
>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
Length = 566
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 130/205 (63%), Gaps = 6/205 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++AAL+ G + PIQ+ + P + GRD++G+A TGTGKT AF +P+L ++
Sbjct: 18 ADLGLRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQRM 77
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
+P+ LVL PTRELA QV + FH L + +YGG PI Q+RALD
Sbjct: 78 PDERPTG----DPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALD 133
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D I R L L + VVLDEAD+ML +GFAED+E ILE P+ RQ+
Sbjct: 134 NGVDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQT 193
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
++FSATMP I + +L +P+ +
Sbjct: 194 VLFSATMPSRIDGMARAHLTDPVRI 218
>gi|450005719|ref|ZP_21826823.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
gi|449188314|gb|EMB90034.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
Length = 517
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|450088713|ref|ZP_21854900.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
gi|450134981|ref|ZP_21871150.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449148899|gb|EMB52727.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449216305|gb|EMC16436.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
Length = 517
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|449961479|ref|ZP_21810850.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|450141452|ref|ZP_21873112.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
gi|450146360|ref|ZP_21874902.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449148357|gb|EMB52237.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449166365|gb|EMB69307.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|449230998|gb|EMC30227.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
Length = 517
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
Length = 715
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 135/206 (65%), Gaps = 5/206 (2%)
Query: 104 LDISQD--IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
LD+ D ++AA+ G ++ PIQ+A + + GRD++G A+TGTGKT AF +P L ++
Sbjct: 51 LDLGLDARVLAAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRL 110
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPISHQMRAL 218
+ + +GR P LVLAPTRELA QV F A LD + VYGG+P Q+ L
Sbjct: 111 AETTDVNGRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGL 170
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID ++R +L+LS++Q +VLDEAD+ML +GFAE+V+ IL P +Q
Sbjct: 171 RRGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQ 230
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+ +FSATMPP IR ++ +YL P V
Sbjct: 231 TALFSATMPPAIRRISAQYLNAPEEV 256
>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
Length = 530
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 146/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+ I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTSRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K+++NP LT DLV
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLV 214
>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
Length = 526
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKI-------DTNRNVVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K+++NP LT DLV
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLV 214
>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
Length = 657
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 132/207 (63%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +PIL +
Sbjct: 11 FADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ F + R P LVLAPTRELA QV + FH A P + VYGG P Q+ A
Sbjct: 71 L-DFAQ-----RKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LSE++ +VLDEAD+ML +GF +DVE +L++LPQ+R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMP I+ + YL +P V
Sbjct: 185 QVALFSATMPAAIKRIAQTYLNDPAEV 211
>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
C3-41]
Length = 508
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNRPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
Q+++FSATMPP IR + ++++P V + + + D I Y + ++
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSA 223
>gi|383777440|ref|YP_005462006.1| putative RNA helicase [Actinoplanes missouriensis 431]
gi|381370672|dbj|BAL87490.1| putative RNA helicase [Actinoplanes missouriensis 431]
Length = 550
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 133/207 (64%), Gaps = 7/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++ AL+ G + PIQ + P + GRD++G+A TGTGKT AF +P+L ++
Sbjct: 7 ADLQLRPELLRALSDLGYEEPTPIQAEAIPPLLDGRDVLGQAATGTGKTAAFALPVLQRL 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
P LVL PTRELA QV + FH A L T + +YGG PI Q++AL+
Sbjct: 67 AGVTSP-----TPAALVLVPTRELAMQVSQAFHRYARDLGTRVVPIYGGQPIGRQLQALE 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +D I R L+LS V+ VVLDEAD+ML +GFAED+E ILE + RQ+
Sbjct: 122 RGVDVVVATPGRALDHISRGTLDLSGVRTVVLDEADEMLDMGFAEDIEAILEETAEERQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP I ++ ++L+ P+ + +
Sbjct: 182 VLFSATMPGRIDAIARRHLREPVRIQM 208
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 142/245 (57%), Gaps = 10/245 (4%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ SK G S D+S IV AL ++GI+ LFP+Q E ++G D++ +ART
Sbjct: 33 DNIIPNNGSKTVGRPFSDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQART 92
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAFGIPI++K+ K RGR P ++ PTRELA QV + L +
Sbjct: 93 GSGKTLAFGIPIVEKLNKIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISGDLVVAAL 152
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q R L GVD VV TPGR D +++ L V+ LDEAD ML +GF ED
Sbjct: 153 YGGVAYSIQERVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKED 212
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+R+ + N Q+++FSAT+P W+ + + KN +D+VG + + A+
Sbjct: 213 IELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGEMRAAN 271
Query: 317 GISLY 321
I +
Sbjct: 272 TIKFF 276
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
Q+++FSATMPP IR + ++++P V + + + D I Y + ++
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSA 223
>gi|420151175|ref|ZP_14658314.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
gi|394772388|gb|EJF51653.1| DEAD/DEAH box helicase, partial [Actinomyces georgiae F0490]
Length = 535
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 138/218 (63%), Gaps = 6/218 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+
Sbjct: 62 FADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLED 121
Query: 161 IIKFNEKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+I +E NP L++ PTREL+KQV + +A L T + +YGG Q
Sbjct: 122 VIAPDEPGFDDLLNPNNPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQ 181
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P
Sbjct: 182 ISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVP 241
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
+R +M+FSATMP + +L K++++P + DQ
Sbjct: 242 SHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQ 279
>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
Length = 537
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 133/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
K P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 ADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|336063871|ref|YP_004558730.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
gi|334282071|dbj|BAK29644.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
Length = 526
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKI-------DTNRNVVQTLVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K+++NP LT DLV
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLV 214
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
Q+++FSATMPP IR + ++++P V + + + D I Y + ++
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSA 223
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 139/229 (60%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQLKTFGHVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----- 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ +
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ V LVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVALVGKMTQKAATPVEHLAI 367
>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 526
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 146/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S++I+A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTNRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K+++NP LT DLV
Sbjct: 174 TRQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLV 214
>gi|450128837|ref|ZP_21869087.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
gi|449229216|gb|EMC28542.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
Length = 517
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVIN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
gi|452077305|gb|AGF93269.1| DEAD/DEAH box helicase domain-containing protein [uncultured
organism]
Length = 431
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L++S+DI A+ G + PIQ + MQGRD+IG+A+TGTGKT AFGIP L+K
Sbjct: 6 FNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPALEK 65
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + ++K +VL PTRELA QV E ++ A + + +YGG PI Q++AL
Sbjct: 66 VDRNSKK------VQTIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKAL 119
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ G V+GTPGR++D ++R+ L+L V+ VLDEAD+ML +GF ED+E+IL +LP RQ
Sbjct: 120 NKGAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQ 179
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+ +FSATMP I +T KY NP + V
Sbjct: 180 TTLFSATMPGPIMKMTKKYQDNPELIKTV 208
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 8/203 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L++S I+ A+ R G + PIQ A + MQG+D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
I R RN +++APTRELA QV +E + + + VYGG IS Q+RAL
Sbjct: 64 I------DHRSRNIQGIIIAPTRELAIQVSEELYRIGQYSRVHVLAVYGGQDISRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGR++D I R L L V +VLDEAD+ML++GF +D+E IL +P++RQ
Sbjct: 118 KNHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
+M+FSATMP IR + +++ NP
Sbjct: 178 TMLFSATMPDPIRKIAERFMNNP 200
>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
Length = 561
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 145/215 (67%), Gaps = 10/215 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K++ L ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG
Sbjct: 19 KEKHLKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFG 78
Query: 155 IPILDKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPI 211
+P L+KI + +E N + LV+APTRELA Q ++E + VYGG+ I
Sbjct: 79 LPTLNKI-RTDE------NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSI 131
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q++AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+
Sbjct: 132 DKQIKALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIIS 191
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
R+P RQ+++FSATMP I+ + K++KNP V +
Sbjct: 192 RVPSERQTLLFSATMPAPIKEIGVKFMKNPEHVQI 226
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 135/211 (63%), Gaps = 8/211 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L ++ IV AL GI+ FPIQ+ + A+ G DMIG+ARTGTGKTLAFGIPIL K
Sbjct: 18 FADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQK 77
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
++ F++ + + P LV++PTRELA+QV + + + +YGG
Sbjct: 78 VVLKTDEGFDQLDPKDK-PQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDD 136
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL+ R L+LS V+ VLDEAD+ML +GF DV+ +L+R
Sbjct: 137 QLDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRT 196
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
P +RQ+MMFSATMP I SL L P+ +
Sbjct: 197 PASRQTMMFSATMPAVIMSLARSRLNQPVNI 227
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 142/245 (57%), Gaps = 10/245 (4%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D + ++ SK G S D+S IV AL ++GI+ LFP+Q E ++G D++ +ART
Sbjct: 33 DNIIPNNGSKAVGRPFSDFDLSPGIVKALEKQGITSLFPVQALTFEAIIRGEDVLVQART 92
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205
G+GKTLAFGIPI++K+ K RGR P ++ PTRELA QV + L +
Sbjct: 93 GSGKTLAFGIPIVEKLNKIEGPLPRGRGPSAVIFCPTRELAIQVRDVLSSISGDLVVAAL 152
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG S Q R L GVD VV TPGR D +++ L V+ LDEAD ML +GF ED
Sbjct: 153 YGGVAYSIQERVLHSGVDIVVATPGRAKDFLEKGTLRFDRVKMACLDEADHMLDIGFKED 212
Query: 266 VEVILERLPQ---------NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD 316
+E++L+R+ + N Q+++FSAT+P W+ + + KN +D+VG + + A+
Sbjct: 213 IELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGEMRAAN 271
Query: 317 GISLY 321
I +
Sbjct: 272 TIKFF 276
>gi|423070020|ref|ZP_17058796.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
gi|355366341|gb|EHG14059.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
Length = 514
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ +S +++A + + G + PIQ+ + AM+G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------NTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K+P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKDPTHVKI 204
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 8/203 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L++S I+ A+ R G + PIQ A + MQG+D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
I R RN +++APTRELA QV +E + + + VYGG IS Q+RAL
Sbjct: 64 I------DHRSRNIQGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+VGTPGR++D I R L L V +VLDEAD+ML++GF +D+E IL +P++RQ
Sbjct: 118 KNHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
+M+FSATMP IR + +++ NP
Sbjct: 178 TMLFSATMPDPIRKIAERFMNNP 200
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 136/212 (64%), Gaps = 12/212 (5%)
Query: 101 ISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+S+ D S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+
Sbjct: 82 VSEFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPL 141
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQ 214
++++ H G P LVLAPTRELA QV F A P L + VYGG Q
Sbjct: 142 IERL------HDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQ 195
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L GVD VVGTPGR++D +++ L+ S ++ +VLDEAD+ML +GF +DVE ILE+LP
Sbjct: 196 INTLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLP 255
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ ++FSATMP IR L+ +YL P + +
Sbjct: 256 EERQMVLFSATMPSEIRRLSKRYLHEPAEITI 287
>gi|408824960|ref|ZP_11209850.1| DEAD/DEAH box helicase [Pseudomonas geniculata N1]
Length = 648
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|344206631|ref|YP_004791772.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777993|gb|AEM50546.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 648
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
Length = 648
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|190573462|ref|YP_001971307.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia K279a]
gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
Length = 654
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|424788171|ref|ZP_18214930.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
gi|422112935|gb|EKU16692.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
Length = 514
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ +S +++A + + G + PIQ+ + AM+G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNEFHLSAELLAEVEKAGFVEASPIQEQTIPLAMEGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------NTENPFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K+P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKDPTHVKI 204
>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
Length = 513
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + ++ R G + PIQ+ + A++GRD++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRA 217
KI N N LV+APTRELA QV +E ++ + + VYGG I Q+RA
Sbjct: 63 KIDPKNP------NIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR+ID I R L L +VQ +VLDEAD+ML++GF +D+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
Q+++FSATMPP IR + ++++P V + + + D I Y + ++
Sbjct: 177 QTLLFSATMPPAIRKIAETFMRDPEIVKI--KAKELTVDNIDQYFVKSA 223
>gi|424667727|ref|ZP_18104752.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
gi|401067989|gb|EJP76513.1| hypothetical protein A1OC_01305 [Stenotrophomonas maltophilia
Ab55555]
Length = 648
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|450112586|ref|ZP_21863225.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
gi|449221937|gb|EMC21684.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
Length = 517
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|450037665|ref|ZP_21835841.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
gi|449192015|gb|EMB93458.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
Length = 517
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|399527779|ref|ZP_10767466.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
gi|398361715|gb|EJN45457.1| DEAD/DEAH box helicase [Actinomyces sp. ICM39]
Length = 719
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
VD+ D S DE + + L + ++I+AA+ G PIQ A + P ++ RD++G A
Sbjct: 27 VDETDTDSDESADETVTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIA 86
Query: 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSL 200
+TGTGKT AFG+P+L I+ +E R+ LVLAPTRELA Q + +F L
Sbjct: 87 QTGTGKTAAFGLPLL-AIVDADE-----RDVQALVLAPTRELAMQSAQAIEDFAARTARL 140
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
D + VYGG+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +
Sbjct: 141 DVVPVYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRM 200
Query: 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
GFAEDVE I P +R + +FSATMP I + ++LK+P+ V
Sbjct: 201 GFAEDVETIASSAPDDRLTALFSATMPAAIEKVAREHLKDPVKV 244
>gi|397649329|ref|YP_006489856.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449878432|ref|ZP_21783625.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449895693|ref|ZP_21789519.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
gi|449917524|ref|ZP_21797265.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449938016|ref|ZP_21804845.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449945061|ref|ZP_21806953.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449966513|ref|ZP_21812374.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449977205|ref|ZP_21816455.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449980880|ref|ZP_21817468.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449992425|ref|ZP_21822308.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449998174|ref|ZP_21824217.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|450011428|ref|ZP_21829171.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|450026596|ref|ZP_21831935.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|450078617|ref|ZP_21851083.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|450116641|ref|ZP_21864588.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|450156792|ref|ZP_21878776.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|450183346|ref|ZP_21888598.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|392602898|gb|AFM81062.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449148200|gb|EMB52105.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449154166|gb|EMB57774.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449163543|gb|EMB66645.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449170036|gb|EMB72776.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449174867|gb|EMB77327.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449176330|gb|EMB78682.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449179705|gb|EMB81898.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449181162|gb|EMB83284.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|449189536|gb|EMB91191.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|449189635|gb|EMB91281.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|449209834|gb|EMC10332.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|449226812|gb|EMC26299.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|449235283|gb|EMC34247.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|449243483|gb|EMC41906.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|449249495|gb|EMC47615.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449254168|gb|EMC52091.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
Length = 517
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|386717711|ref|YP_006184037.1| cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
gi|384077273|emb|CCH11859.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia D457]
Length = 651
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 15 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 74
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 75 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 128
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 129 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 188
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 189 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 223
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 166/273 (60%), Gaps = 14/273 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+ S+ ++ LA +G + PIQK + M GRD++G+A+TGTGKT AF +P+L++
Sbjct: 50 FSEFGFSEALLKTLADKGYKEPSPIQKEAIPELMLGRDLVGQAQTGTGKTAAFALPLLER 109
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ G P LVLAPTRELA QV + F + P L+ + +YGG+ Q+ A
Sbjct: 110 L------QGDSPLPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINA 163
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VVGTPGRV+D +++ LN S ++ +VLDEAD+ML +GF +DVE ILE+LP+ R
Sbjct: 164 LRRGVDVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPEER 223
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALF 337
Q ++FSATMP IR L+ +YL+ P + + + +K A I I T N K+E AL
Sbjct: 224 QVVLFSATMPNEIRRLSKRYLREPAEITI--KTKEKEARRIRHRCI-TMQNSHKLE-ALN 279
Query: 338 SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARG 370
+ + V ++++ + ++L + S +A G
Sbjct: 280 RVLEAVTGEG-VIIFARTKAITLTVAESLEAAG 311
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP+++K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I K +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISKNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+M+FSATMPP I+ L ++LK+P V ++
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKDPEHVSVI 206
>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 646
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 136/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P LVLAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 KRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 431
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 135/213 (63%), Gaps = 8/213 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L++S+DI A+ G + PIQ + M+G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLTFKDLNLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
L+ + + + LVL PTRELA QV +E + A +T + VYGG PI Q
Sbjct: 62 ALEML------DVKSKKVQVLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV V+GTPGR++D ++R L L +V+ VVLDEAD+ML +GF ED+E IL R P
Sbjct: 116 IKALRRGVHIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAP 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+Q+++FSATMP I LT KY +NP V V
Sbjct: 176 GKKQTVLFSATMPKPIIKLTKKYQQNPQMVKTV 208
>gi|450121873|ref|ZP_21866488.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
gi|449228714|gb|EMC28070.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
Length = 517
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans
UA159]
gi|387786557|ref|YP_006251653.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449868045|ref|ZP_21779892.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
gi|449873594|ref|ZP_21781776.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449900440|ref|ZP_21791449.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449905661|ref|ZP_21793153.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449987637|ref|ZP_21820439.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|450054177|ref|ZP_21841677.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|450064682|ref|ZP_21845431.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|450074791|ref|ZP_21849420.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|450084208|ref|ZP_21853214.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|450103709|ref|ZP_21859410.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|450108165|ref|ZP_21861307.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|450161259|ref|ZP_21880452.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|450172283|ref|ZP_21884450.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|450178263|ref|ZP_21886619.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
mutans UA159]
gi|379132958|dbj|BAL69710.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449153879|gb|EMB57510.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449175876|gb|EMB78251.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|449197934|gb|EMB99072.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|449203267|gb|EMC04138.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|449208651|gb|EMC09229.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|449212021|gb|EMC12405.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|449217050|gb|EMC17127.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|449220963|gb|EMC20781.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|449238898|gb|EMC37638.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|449242989|gb|EMC41471.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|449243022|gb|EMC41497.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|449257367|gb|EMC55046.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449258022|gb|EMC55626.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449263316|gb|EMC60715.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
Length = 517
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|449910781|ref|ZP_21794880.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
gi|449259079|gb|EMC56625.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
Length = 517
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
Length = 538
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 143/211 (67%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI + +E N + LV+APTRELA Q ++E + VYGG I Q+
Sbjct: 61 NKI-RTDE------NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++KNP V +
Sbjct: 174 ERQTLLFSATMPAPIKQIGVKFMKNPEHVQI 204
>gi|449952218|ref|ZP_21808893.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
gi|449165426|gb|EMB68434.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
Length = 517
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 142/244 (58%), Gaps = 12/244 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +++AAL +G + IQ + A++GRD++G+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFALRPEVLAALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIA 60
Query: 159 DKI---IKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
K+ + + + RGR P +L PTRELA QV E AP L + +YGGT
Sbjct: 61 HKLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPHLHVLPIYGGTGYG 120
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q L G D VV TPGR ID + + L+LS V+ VLDEAD+MLS+GF EDVE +L
Sbjct: 121 SQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLLGA 180
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332
P +RQ+ +FSAT+P W + L +Y+++P+ V++V D +S +A +Q
Sbjct: 181 TPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVVKDEQ------VSYEELALQAPLQTR 234
Query: 333 ENAL 336
N L
Sbjct: 235 LNTL 238
>gi|450003648|ref|ZP_21826168.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
gi|449182133|gb|EMB84176.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
Length = 517
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|449921723|ref|ZP_21799071.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
gi|449156658|gb|EMB60119.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
Length = 517
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|405979651|ref|ZP_11037994.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392067|gb|EJZ87128.1| hypothetical protein HMPREF9241_00717 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 596
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 142/232 (61%), Gaps = 15/232 (6%)
Query: 94 SKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+ DE L+ + ++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKT
Sbjct: 65 TGDEDLEHKSFADFGVTDPIVDALEDKGITHPFPIQALTLPPALDRHDIIGQAKTGTGKT 124
Query: 151 LAFGIPILDKIIKFNEKHGRGRN-------PLCLVLAPTRELAKQVEKEFHESAPSLDT- 202
L FGIP+L+ +I +E+ G + P L++ PTREL KQV + E+A L T
Sbjct: 125 LGFGIPVLEDVIAPDEE---GYDELLNPNMPQALIILPTRELTKQVATDLREAAAYLSTR 181
Query: 203 -ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ AL G D VVGTPGR+IDL+++ L+L+ + VVLDEAD+ML +G
Sbjct: 182 IVEIYGGVAFEPQIEALKKGADIVVGTPGRLIDLLRKGVLHLNGAETVVLDEADEMLDLG 241
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
F DVE +L R P NR +M+FSATMP + +L K+++ P + DQ
Sbjct: 242 FLPDVETLLARTPANRHTMLFSATMPGPVVALARKFMEQPTHIRAQDPEDQN 293
>gi|340053887|emb|CCC48181.1| putative nucleolar RNA helicase II, fragment [Trypanosoma vivax
Y486]
Length = 567
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 139/240 (57%), Gaps = 10/240 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++ S G S+ ++S IV AL ++GI LFP+Q E M+G D++ +ARTG+GKT
Sbjct: 39 NNGSAAAGRPFSEFNLSSGIVQALEKQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKT 98
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
LAFGIPI++K+ E RGR P ++ PTRELA QV + L +YGG
Sbjct: 99 LAFGIPIIEKLNSLKEGPTRGRGPAAVIFCPTRELAIQVRDVIAGISGGLSVTALYGGVA 158
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
+ Q RAL GVD VV TPGR D +++ L V+ V LDEAD ML +GF ED+E++L
Sbjct: 159 YNVQERALYSGVDVVVATPGRAKDFLEKGTLRFDRVKMVCLDEADHMLDIGFKEDIELLL 218
Query: 271 ERLPQN---------RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
+R+ + Q+++FSAT+P W+ + + KN +D+VG + A+ I Y
Sbjct: 219 QRVAEQNGSVPNEPKHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGAMRAANTIKFY 277
>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852122|ref|ZP_11909267.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739611|gb|EHI64843.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
Length = 538
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI + +E + LV+APTRELA Q ++E + VYGG I Q++
Sbjct: 61 NKI-RTDENIIQ-----ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++KNP V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQI 204
>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase [Kyrpidia tusciae DSM 2912]
gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Kyrpidia tusciae DSM 2912]
Length = 526
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 9/203 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ +S+ + A+ G + PIQ A + +QG+D+IG+A+TGTGKT AFG+PI+
Sbjct: 4 FTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPII-- 61
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
E G GR+ L+L PTRELA QV E + A + T+ +YGG I HQ+RAL
Sbjct: 62 -----EMMGTGRHVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRAL 116
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV V+GTPGRV+D ++R L L +V+ VVLDEAD+ML +GF ED+E IL+ PQ RQ
Sbjct: 117 QQGVGVVIGTPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQ 176
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
+++FSAT P ++ L +Y+KNP
Sbjct: 177 TLLFSATFPHEVKQLAVRYMKNP 199
>gi|450047104|ref|ZP_21839304.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
gi|449197930|gb|EMB99069.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
Length = 517
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345893680|ref|ZP_08844473.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345045934|gb|EGW49832.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
Length = 593
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L +SQD++ A+ G + PIQ + + GRD +G+A+TGTGKT AFG+PIL+K
Sbjct: 5 FEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
+I G+ LVL PTRELA QV +E + A + + VYGG I Q RA
Sbjct: 65 VIS-------GKGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR+ID ++R L L EV VVLDEAD+ML +GF ED+E ILER P
Sbjct: 118 LAKGAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP 301
Q ++FSATMPP IR L+ ++L+ P
Sbjct: 178 QRILFSATMPPPIRELSKRFLREP 201
>gi|346725640|ref|YP_004852309.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|346650387|gb|AEO43011.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 632
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 133/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
K P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 ADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|456733812|gb|EMF58634.1| Cold-shock DEAD-box protein A [Stenotrophomonas maltophilia EPM1]
Length = 648
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 9/215 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L +S+ ++ A+ G PIQ A + ++GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
I K P L+LAPTRELA QV + F + P + VYGG P Q+
Sbjct: 69 SNIDLQQIK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV VVGTPGRVID + R+ L+LSE++ +VLDEAD+ML +GF +DVE +L++LP+
Sbjct: 123 SALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPE 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
RQ +FSATMPP IR + YL++P+ V + +
Sbjct: 183 QRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKT 217
>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase [Halanaerobium hydrogeniformans]
gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium
hydrogeniformans]
Length = 529
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 133/202 (65%), Gaps = 9/202 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++LDIS +I+ A+ G + PIQ + + G+D++G+A+TGTGKT AFGIP+L+
Sbjct: 7 NELDISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLLE-- 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRAL 218
E ++P ++L PTRELA QV +E A + T+ VYGG I Q+RAL
Sbjct: 65 ----EMDANKKDPQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQIRAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GV V+GTPGRV+D I+R L L+++ + VLDEAD ML +GF +D+E +L +P++RQ
Sbjct: 121 NKGVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKN 300
++ FSAT+P IR L+ KY KN
Sbjct: 181 TLFFSATIPKSIRRLSRKYQKN 202
>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 632
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|390991391|ref|ZP_10261657.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553884|emb|CCF68632.1| DEAD/DEAH box helicase family protein [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 632
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
Length = 416
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|418516368|ref|ZP_13082542.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418519674|ref|ZP_13085726.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410705118|gb|EKQ63597.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706907|gb|EKQ65363.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 632
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|384418608|ref|YP_005627968.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353461521|gb|AEQ95800.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 650
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 135/213 (63%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 27 FADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 87 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 140
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 141 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 200
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P+ V + +
Sbjct: 201 QVALFSATMPPAIRRIAQTYLKDPVEVTIAAKT 233
>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
Length = 471
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D G + L ++ ++AAL G PIQ A + P + GRD++G+A TGTGKT
Sbjct: 26 DTPETPAGPTFADLGLAPTLLAALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKT 85
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGG 208
AF +P+L ++ RG P +VLAPTRELA QV + + L CV+GG
Sbjct: 86 AAFALPMLQRLADGRVSRDRGPKPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGG 145
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
PI Q+ L GVD VV TPGR IDLI R AL+L ++ VLDEAD+ML +GF ED+E
Sbjct: 146 APIGPQLGQLRRGVDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIET 205
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
IL P+ RQ+++FSATMP I+SL +L +P
Sbjct: 206 ILGSTPEGRQTVLFSATMPGRIQSLARTHLSDP 238
>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
pyogenes M49 591]
Length = 385
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|350533075|ref|ZP_08912016.1| ATP-dependent RNA helicase DeaD [Vibrio rotiferianus DAT722]
Length = 639
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAG 212
>gi|357639882|ref|ZP_09137755.1| DEAD/DEAH box helicase [Streptococcus urinalis 2285-97]
gi|418417504|ref|ZP_12990699.1| hypothetical protein HMPREF9318_01447 [Streptococcus urinalis
FB127-CNA-2]
gi|357588336|gb|EHJ57744.1| DEAD/DEAH box helicase [Streptococcus urinalis 2285-97]
gi|410871423|gb|EKS19371.1| hypothetical protein HMPREF9318_01447 [Streptococcus urinalis
FB127-CNA-2]
Length = 533
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++LD+SQDI +A+ R G PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELDLSQDIQSAVVRAGFETPSPIQELTIPLAIEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
DKI + N LV+APTRELA Q ++E + V+GG+ I Q+
Sbjct: 61 DKIDVDQNVVQ-------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVFGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L +V+ ++LDEAD+ML++GF ED+E I+ ++P
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLKDVKVLILDEADEMLNMGFLEDIEAIISQVPS 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+++FSATMP I+ + K++KNP
Sbjct: 174 ERQTLLFSATMPDPIKQIGIKFMKNP 199
>gi|357418161|ref|YP_004931181.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355335739|gb|AER57140.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 646
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L +S ++AALA G PIQ A + + GRD++G A+TGTGKT AF +P+L
Sbjct: 12 FSALGLSAPVMAALATVGYESPSPIQAATIPALLAGRDVLGTAQTGTGKTAAFALPVLSN 71
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
+ K P LVLAPTRELA QV + F + A P + +YGG + Q++A
Sbjct: 72 LDLAAGK------PQALVLAPTRELAIQVAEAFQKYAASIPGFHVLPIYGGQAYAPQLQA 125
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID ++R +L+LS + +VLDEAD+ML +GF +DVE +L++ P+ R
Sbjct: 126 LKRGVHVVVGTPGRVIDHLERGSLDLSGLATLVLDEADEMLRMGFIDDVETVLKKTPETR 185
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
Q +FSATMPP IR + YLK+P+ V++
Sbjct: 186 QVALFSATMPPAIRRIAQTYLKDPVEVNIA 215
>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 562
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 133/210 (63%), Gaps = 6/210 (2%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L + +++ ALA G + IQ+ + ++GRD++G+A TGTGKT AF +P
Sbjct: 8 EQFSFADLGLRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLP 67
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
IL ++ + RG P L+L PTRELA QV + H L + +YGG PI Q
Sbjct: 68 ILHRLPDSD----RGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQ 123
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+RAL+ GVD VV TPGR +D I R L L V+ VVLDEAD+ML +GFAED+E I+E +P
Sbjct: 124 LRALERGVDVVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVP 183
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+NRQ+++FSATMP I + ++L +P+ V
Sbjct: 184 ENRQTVLFSATMPDRIEGIARRHLTDPVRV 213
>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
Length = 489
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 136/220 (61%), Gaps = 18/220 (8%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L ++ IVAALA +GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L
Sbjct: 7 DFAELGVAGPIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQ 66
Query: 160 KIIKFNEKHG----------------RGRNPLCLVLAPTRELAKQVEKEFHESAPS--LD 201
+++ NE R P LV+ PTRELAKQV + ++ +D
Sbjct: 67 RVVGKNEDGAAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDID 126
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q++ L GVD VVGTPGR++DL R L L +V+ VVLDEAD+ML +G
Sbjct: 127 IMTIYGGMDFDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLG 186
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
F DVE I+ +P +RQ+M+FSATMP + +L +Y+ P
Sbjct: 187 FLPDVEKIINAVPAHRQTMLFSATMPGAVITLARRYMSRP 226
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 148/238 (62%), Gaps = 11/238 (4%)
Query: 85 DDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144
+D A + S+ D + L + D+ A+++ G +K PIQ+ + M+GRD++G A+
Sbjct: 49 EDTGAEETSANDNSQGFAHLGLPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQ 108
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---D 201
TGTGKT AF +P+L +I R P LVLAPTRELA QV F A L +
Sbjct: 109 TGTGKTAAFALPVLSQI------DTEARYPQALVLAPTRELALQVADSFQSFADHLGRIE 162
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ +YGG Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++G
Sbjct: 163 VLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMG 222
Query: 262 FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
F EDVE ILE P+++Q +FSATMP IR L+ +YL NP V + S+++ D I+
Sbjct: 223 FQEDVERILEDTPEDKQVALFSATMPNSIRRLSKQYLNNPAEVTV--KSERRTNDNIT 278
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 160/268 (59%), Gaps = 20/268 (7%)
Query: 64 AISRPLDFKSSIAWQHAQSAVD---------DYVAYDDSSKDEGLDISKLDISQDIVAAL 114
++ P +F S + + +Q V+ D A D S+ D + L + +++ A+
Sbjct: 10 GVNEPEEFNKSESQEISQGDVETTGAANNPEDTGAEDTSANDNSQGFATLGLPEEVQQAV 69
Query: 115 ARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174
A+ G ++ PIQ+ + M+GRD++G A+TGTGKT AF +P+L ++ R+P
Sbjct: 70 AKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQV------DPEVRHP 123
Query: 175 LCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGR 231
LVLAPTRELA QV F A L + + +YGG Q+ L G +VGTPGR
Sbjct: 124 QALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQIIVGTPGR 183
Query: 232 VIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIR 291
VID +++ +L++S+++F+VLDEAD+ML++GF EDVE ILE P+ +Q +FSATMP IR
Sbjct: 184 VIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALFSATMPNSIR 243
Query: 292 SLTNKYLKNPLTVDLVGDSDQKLADGIS 319
L+ +YL +P V + S+++ D I+
Sbjct: 244 RLSKQYLNDPAEVTV--KSERRTNDNIT 269
>gi|423351179|ref|ZP_17328830.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
gi|404386815|gb|EJZ81953.1| hypothetical protein HMPREF9719_01125 [Turicella otitidis ATCC
51513]
Length = 437
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 3/207 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL GI + F IQK L A+ G+D+IG+ARTG GKTLA+G+P+LD+
Sbjct: 17 FAELGVAAEIVDALNEGGIERTFAIQKLALPLALDGKDIIGQARTGMGKTLAYGVPLLDR 76
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+APTRELA+QV + +A L + +C+YGG + Q+ L
Sbjct: 77 VFDSADVTAPDGTPRALVVAPTRELARQVGTDLENAARGLPLEVLCIYGGQDFAPQLEGL 136
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
GVD VVGTPGR++DL +R AL+L V+ VVLDEAD+ML +GF DV +LE P + R
Sbjct: 137 KKGVDVVVGTPGRLLDLNRRGALDLGGVEIVVLDEADEMLDLGFLPDVTKLLELAPAERR 196
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+++FSATMP I L + P+ +
Sbjct: 197 QTLLFSATMPGSILGLARSVMTKPVHI 223
>gi|209559644|ref|YP_002286116.1| ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
Length = 539
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|450030943|ref|ZP_21833495.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
gi|449192085|gb|EMB93521.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
Length = 517
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNYVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|383480233|ref|YP_005389127.1| RNA helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|383494150|ref|YP_005411826.1| RNA helicase SrmB [Streptococcus pyogenes MGAS1882]
gi|378928223|gb|AFC66429.1| RNA helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|378929877|gb|AFC68294.1| RNA helicase SrmB [Streptococcus pyogenes MGAS1882]
Length = 539
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 648
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 27 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 87 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 140
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 141 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 200
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 201 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 233
>gi|386362972|ref|YP_006072303.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pyogenes
Alab49]
gi|350277381|gb|AEQ24749.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pyogenes
Alab49]
Length = 539
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 143/211 (67%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFKKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI + NE N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKI-RTNE------NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPA 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 174 DRQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
Length = 539
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 648
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 27 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 87 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 140
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 141 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQR 200
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 201 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 233
>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704901|ref|YP_005203360.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282604|gb|EDT48028.1| DEAD/DEAH box helicase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681600|gb|AEZ61889.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 533
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 143/211 (67%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+ I+AA+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
DKI RN + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 DKI-------DTSRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + ++KNP V +
Sbjct: 174 SRQTLLFSATMPEPIKRIGVNFMKNPEHVKI 204
>gi|15675334|ref|NP_269508.1| ATP-dependent RNA helicase [Streptococcus pyogenes SF370]
gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|410680821|ref|YP_006933223.1| DEAD/DEAH box helicase [Streptococcus pyogenes A20]
gi|417856607|ref|ZP_12501666.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892934|ref|ZP_16323529.1| Cold-shock DEAD-box protein A [Streptococcus pyogenes NS88.2]
gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS8232]
gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|379981303|emb|CCG27251.1| Cold-shock DEAD-box protein A [Streptococcus pyogenes NS88.2]
gi|387933562|gb|EIK41675.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395454207|dbj|BAM30546.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 476]
gi|409693410|gb|AFV38270.1| DEAD/DEAH box helicase family protein [Streptococcus pyogenes A20]
Length = 539
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|21910615|ref|NP_664883.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS315]
gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
Length = 539
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 133/209 (63%), Gaps = 12/209 (5%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS+ AL R G + PIQ+ + M+GRD+IG+A+TGTGKT AFGIPI++K+
Sbjct: 30 SELNISETTQNALLRMGFEEATPIQEGTITFGMEGRDVIGQAQTGTGKTAAFGIPIIEKL 89
Query: 162 IKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
+NP LV+APTRELA QV +E ++ + VYGG I Q+RA
Sbjct: 90 --------DPKNPAVQALVIAPTRELAIQVSEEIYKVGYGSRAKVLSVYGGQEIGRQIRA 141
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L + VVGTPGR++D I R L L VQ +VLDEAD+ML++GF ED+ IL +P R
Sbjct: 142 LRNNPNIVVGTPGRILDHINRKTLKLDNVQTLVLDEADEMLNMGFIEDINTILASVPAER 201
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+++FSATMP IR + ++KNP V +
Sbjct: 202 QTLLFSATMPAPIRKIAETFMKNPEIVKI 230
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QGRDMIG+A+TGTGKT AFGIP+++K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I + +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISRSDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+M+FSATMP I+ L ++LKNP V ++
Sbjct: 178 TMLFSATMPANIKRLAEQFLKNPEHVSVI 206
>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
Length = 643
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
35937]
Length = 636
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
Q +FSATMPP IR + YLK+P V +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIA 214
>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
Length = 539
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI H LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------HTEDATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|417948598|ref|ZP_12591742.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809545|gb|EGU44662.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 638
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 137/213 (64%), Gaps = 9/213 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L I +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+ Q ++FSATMPP ++++ ++YL+NP VD+ G
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG 212
>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
Length = 646
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 136/211 (64%), Gaps = 9/211 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +P+L+K
Sbjct: 8 FSDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPLLNK 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRA 217
+ R P +VLAPTRELA QV K ++ L + +YGGT I QMRA
Sbjct: 68 LDLGQ------RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E P++
Sbjct: 122 LKHGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
Q ++FSATMPP ++++ ++L+ P+T+D+ G
Sbjct: 182 QRVLFSATMPPMLKNIVERFLREPVTIDVAG 212
>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
Length = 528
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI H LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------HTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 134/209 (64%), Gaps = 9/209 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S++I A+ G + PIQ + ++G D+IG+A+TGTGKT +F IPIL+ I
Sbjct: 7 NELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRAL 218
+ N R +VL PTRELA QV +E + A + T+ +YGG PI Q++AL
Sbjct: 67 DRDN------RKLQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQIKAL 120
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV +GTPGRVID I R L L +V+ VVLDEAD+ML +GF ED+E IL +P+ RQ
Sbjct: 121 KGGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQ 180
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+ +FSATMP I LT KY K+P+ + +V
Sbjct: 181 TALFSATMPKAILELTKKYQKDPVHIKVV 209
>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 537
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ DIS + A+ G + PIQ+ + + G D+IG+A+TGTGKT AFGIP++DK+
Sbjct: 5 TDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVVDKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R L+L PTRELA QV E + + + T+ +YGG I HQ++AL
Sbjct: 65 TE-------ERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGR++D ++R L L+ V VVLDEAD+ML +GF +D+E IL+ + Q RQ+
Sbjct: 118 QGVQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMPP IR L+ KY+ +P TV +
Sbjct: 178 LLFSATMPPAIRKLSRKYMNDPKTVTI 204
>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 699
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D +EG+ + L + +I+AA+ G PIQ A + P ++ RD++G A+TGTGKT
Sbjct: 29 DSDQAEEGVTFASLGLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKT 88
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYG 207
AFG+P+L I+ +E R+ LVLAPTRELA Q + +F A LD + VYG
Sbjct: 89 AAFGLPLL-AIVDADE-----RDVQALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYG 142
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAEDVE
Sbjct: 143 GSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVE 202
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
I +P R + +FSATMP I + ++LK+P+ V
Sbjct: 203 TIASAVPAQRLTALFSATMPAAIEKVAREHLKDPVKV 239
>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
Length = 646
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 137/213 (64%), Gaps = 9/213 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L I +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+ Q ++FSATMPP ++++ ++YL+NP VD+ G
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG 212
>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
Length = 643
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++ + ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLRDPVTVDVAG 212
>gi|449880947|ref|ZP_21784188.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
gi|449925904|ref|ZP_21800489.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449161097|gb|EMB64311.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449252101|gb|EMC50090.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
Length = 517
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 146/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A+ G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALDGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|415700048|ref|ZP_11457779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
gi|381315039|gb|EIC55803.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
Length = 290
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 141/205 (68%), Gaps = 8/205 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEA-----TIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+++FSATMP I+ + +++K P
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAP 199
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAISIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I K +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISKNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+M+FSATMPP I+ L ++LK+P V ++
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKDPEHVSVI 206
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 3/215 (1%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
S +EG + L + +++AL G K PIQ+ + + G+D++G A+TGTGKT A
Sbjct: 98 ESHEEGTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAA 157
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGT 209
F +P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+
Sbjct: 158 FALPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGS 217
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P Q+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE I
Sbjct: 218 PYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETI 277
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
LE P +Q +FSATMP IR + +YL +P V
Sbjct: 278 LEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEV 312
>gi|389795816|ref|ZP_10198925.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
gi|388430147|gb|EIL87341.1| DNA/RNA helicase [Rhodanobacter fulvus Jip2]
Length = 622
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 131/204 (64%), Gaps = 9/204 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D++ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
N + G+ P LVLAPTRELA QV + F A P + +YGG Q+ AL
Sbjct: 76 -NPRAGK---PQALVLAPTRELAIQVAEAFQRYAAHIPGFQVLPIYGGQSYGPQLHALKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELRFLVLDEADEMLRMGFIDDVEKVLHATPPERQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+FSATMP IR + ++LK+P+ V
Sbjct: 192 LFSATMPAVIRKIAQRHLKDPVEV 215
>gi|375263387|ref|YP_005025617.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
gi|369843814|gb|AEX24642.1| cold-shock DEAD-box protein A [Vibrio sp. EJY3]
Length = 639
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGVDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++ + ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLRDPVTVDVAG 212
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ D+ ++ A+ G + PIQ + A+QG+DMIG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I + +EK L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 IARNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+M+FSATMPP I+ L ++LK+P V ++
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKDPEHVSVI 206
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 138/203 (67%), Gaps = 8/203 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I++AL G + PIQK + A++G D+IG+A+TGTGKT AFGIPI+ I
Sbjct: 12 LNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
+EK+ R+ LV++PTREL QV +E + + + VYGG PI Q+R+L +G
Sbjct: 70 -DEKN---RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 125
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR++D ++R ++L + F+VLDEAD+ML +GF ED+E I++ +P RQ+M+
Sbjct: 126 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 185
Query: 282 FSATMPPWIRSLTNKYLKNPLTV 304
FSATMP I S++ KY++ P V
Sbjct: 186 FSATMPRPILSISKKYMRTPKVV 208
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 139/216 (64%), Gaps = 9/216 (4%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+K+E + S+ +V L +G + PIQ A M GRD++G+A+TGTGKT AF
Sbjct: 38 AKEEPSGFAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAF 97
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L+++ K K P LVLAPTRELA QV + F + P L+ + +YGG+
Sbjct: 98 ALPLLERLQKDATK------PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSD 151
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ AL GVD VVGTPGRV+D +++ L+ + ++ +VLDEAD+ML +GF +DVE IL
Sbjct: 152 FRSQIHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWIL 211
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++LP+ RQ ++FSATMP IR L+ +YL+ P + +
Sbjct: 212 DQLPEERQVVLFSATMPSEIRRLSKRYLREPAEITI 247
>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
Length = 470
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 145/232 (62%), Gaps = 9/232 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII-----K 163
+I AL GI FPIQ+ L A+ G D+IG+ARTGTGKTLAF IP++ + + +
Sbjct: 3 EIADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDPE 62
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ E G+ P L++APTRELA QV + ++ T + +YGG P Q+ AL+ G
Sbjct: 63 YGELAAPGK-PQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD V+GTPGR++DL R AL+LS V+ +VLDEAD+ML +GF DVE IL + P+ RQ+M+
Sbjct: 122 VDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTML 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
FSATMP I L K++++P+ + D ++ + + + + +M K E
Sbjct: 182 FSATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQF-VWQAHDMDKPE 232
>gi|449933031|ref|ZP_21803081.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
gi|449160654|gb|EMB63903.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
Length = 517
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 144/211 (68%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 634
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 132/207 (63%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMPP IR + YLK+P V
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEV 211
>gi|384428616|ref|YP_005637976.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341937719|gb|AEL07858.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 642
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 141/214 (65%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L++S++I+ A+ G + PIQ + +QG+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFEELNLSKEILKAIEELGYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
L++I + L+L PTRELA QV +E + + ++ + +YGG I
Sbjct: 62 TLERI------DPSKKTIQALILCPTRELAIQVSEELKKLSKYKKAIGILPIYGGQSIER 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+++L GV+ ++GTPGR ID I+R L L +++ +LDEAD+ML++GF ED+E IL++
Sbjct: 116 QIQSLKKGVNIIIGTPGRCIDHIERGTLKLEDIKLFILDEADEMLNMGFIEDIEFILDKT 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P+++Q+++FSATMP I LT KYLKNP + +V
Sbjct: 176 PKDKQTLLFSATMPDPILKLTKKYLKNPEHIKVV 209
>gi|417677313|ref|ZP_12326720.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418155567|ref|ZP_12792295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418157874|ref|ZP_12794590.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|418225966|ref|ZP_12852594.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353820426|gb|EHE00612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353824322|gb|EHE04496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|353881163|gb|EHE60977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
Length = 524
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 13 NFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + A PSL + VYGG + Q+R
Sbjct: 73 KL-NLDKRH-----PQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLR 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 127 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+M+FSATMP IR L Y+ P+ V +
Sbjct: 187 RQTMLFSATMPAGIRKLARVYMNEPVDVKV 216
>gi|400290741|ref|ZP_10792768.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921532|gb|EJN94349.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
Length = 517
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++++DI++A+ + G ++ PIQ+ + A+ G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLTEDILSAVEKAGFTEPSPIQELTIPLALAGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI I N LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKINIASNLVQ-------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
+RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 SRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|367466933|ref|ZP_09466972.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
gi|365817900|gb|EHN12843.1| Cold-shock DEAD-box protein A [Patulibacter sp. I11]
Length = 579
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 139/207 (67%), Gaps = 6/207 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++AL+ G + PIQ+ + P ++GRD++G+A TGTGKT AF +P+L +I
Sbjct: 13 ADLALDPRLLSALSTLGYEEPTPIQREAIGPLLEGRDLLGQAATGTGKTAAFALPLLQRI 72
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ G+ P LVL PTRELA QV + H+ L T + VYGGTPI Q++ L
Sbjct: 73 AA-GERTGK---PAGLVLVPTRELAMQVSEAIHKYGLELGTRVLPVYGGTPIVRQLKTLH 128
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +DL+ R AL+LS+++ ++LDEAD+ML +GFAED++ IL +P Q+
Sbjct: 129 RGVDVVVATPGRALDLLNRGALDLSDLKTIILDEADEMLDMGFAEDLDAILGAIPTEHQA 188
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP I + ++L++P+ + L
Sbjct: 189 VLFSATMPKRIDRMAQRHLRDPVRIQL 215
>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990915|ref|YP_001902925.1| cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris str. B100]
gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
campestris]
Length = 642
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 648
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 132/213 (61%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 27 FADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 86
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
K P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 87 ADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 140
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP R
Sbjct: 141 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQR 200
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 201 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 233
>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 523
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
Length = 642
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQV-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q +FSATMPP IR + YLK+P V + +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIAAKT 217
>gi|418134760|ref|ZP_12771617.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|353901997|gb|EHE77527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
Length = 430
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 143/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEA-----TIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|418966957|ref|ZP_13518660.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383346061|gb|EID24135.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 523
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 138/203 (67%), Gaps = 8/203 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I++AL G + PIQK + A++G D+IG+A+TGTGKT AFGIPI+ I
Sbjct: 17 LNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSI-- 74
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
+EK+ R+ LV++PTREL QV +E + + + VYGG PI Q+R+L +G
Sbjct: 75 -DEKN---RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHG 130
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR++D ++R ++L + F+VLDEAD+ML +GF ED+E I++ +P RQ+M+
Sbjct: 131 VQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTML 190
Query: 282 FSATMPPWIRSLTNKYLKNPLTV 304
FSATMP I S++ KY++ P V
Sbjct: 191 FSATMPRPILSISKKYMRTPKVV 213
>gi|417850281|ref|ZP_12496192.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
gi|339452963|gb|EGP65581.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
Length = 524
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus]
gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus]
Length = 538
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + ++S+DI +A+ G K PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI + N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIRTAD-------NTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 114 KALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 174 HRQTLLFSATMPAPIKEIGVKFMKDPEHVQV 204
>gi|195977782|ref|YP_002123026.1| ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 538
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + ++S+DI +A+ G K PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI + N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIRTAD-------NTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 114 KALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 174 HRQTLLFSATMPAPIKEIGVKFMKDPEHVQV 204
>gi|418977410|ref|ZP_13525229.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
gi|383349927|gb|EID27841.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
Length = 524
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 129/200 (64%), Gaps = 5/200 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + DI AL GI FPIQ L A+ G D+IG+ARTGTGKT AFG+P+L ++
Sbjct: 23 LGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQRV-- 80
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ + G + P LV+ PTRELA QV + ++ +D VYGG Q+ AL G
Sbjct: 81 -HTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKG 139
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGR++DL+K+ L LSEV +VLDEAD+ML +GF D+E IL + P RQ+M+
Sbjct: 140 VDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTML 199
Query: 282 FSATMPPWIRSLTNKYLKNP 301
FSATMP I +L+ KYL+ P
Sbjct: 200 FSATMPSEIVALSRKYLRRP 219
>gi|423687698|ref|ZP_17662501.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
gi|371493481|gb|EHN69084.1| cold-shock deAd box protein a [Vibrio fischeri SR5]
Length = 636
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 135/212 (63%), Gaps = 9/212 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
Q ++FSATMPP ++++ ++YL++P VD+ G
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAG 212
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 136/210 (64%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S ++ AL G + PIQ + ++G D+IG+A+TGTGKT AFGIPI+
Sbjct: 6 LSFKAMGLSSSVIKALEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFGIPIV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMR 216
+++ H R + LVLAPTRELA QV +E + + + +YGG Q+R
Sbjct: 66 ERL-----DH-RSKRVEALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYDRQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL++G V+GTPGRV+D I+R L L VQ +VLDEAD+ML +GF ED+E IL+ +P+N
Sbjct: 120 ALEHGAQVVIGTPGRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKNVPEN 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSAT+P I L +YLK+P+ V++
Sbjct: 180 RQTLLFSATVPDPIAKLARRYLKDPVHVNI 209
>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
Length = 640
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 135/212 (63%), Gaps = 9/212 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
Q ++FSATMPP ++++ ++YL++P VD+ G
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAG 212
>gi|414563587|ref|YP_006042548.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846652|gb|AEJ24864.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 538
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + ++S+DI +A+ G K PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI + N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIRTAD-------NTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 114 KALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 174 DRQTLLFSATMPAPIKEIGVKFMKDPEHVQV 204
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ ++ ++ A+ G + PIQ + A+QGRDMIG+A+TGTGKT AFGIP++ K
Sbjct: 4 FAEFNLEPKVLEAITELGFEEATPIQSQSIPLALQGRDMIGQAQTGTGKTAAFGIPLISK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I + ++K L++APTRELA QV +E + + L T+ +YGG I Q+RAL
Sbjct: 64 ISRNDDKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
++GTPGR++D I R + L +V VVLDEAD+ML +GF ED++ IL+++P RQ
Sbjct: 118 KKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+M+FSATMPP I+ L ++LKNP V ++
Sbjct: 178 TMLFSATMPPNIKRLAEQFLKNPEHVSVI 206
>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
Length = 665
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 137/213 (64%), Gaps = 9/213 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+ Q ++FSATMPP ++++ ++YL+NP VD+ G
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG 212
>gi|424039163|ref|ZP_17777588.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
HENC-02]
gi|408893295|gb|EKM30541.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
HENC-02]
Length = 251
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTIDVAG 212
>gi|415752805|ref|ZP_11479787.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|381308452|gb|EIC49295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
Length = 511
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 144/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|383938412|ref|ZP_09991624.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418973302|ref|ZP_13521309.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349699|gb|EID27622.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714714|gb|EID70708.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 526
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|421490441|ref|ZP_15937813.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
gi|400372931|gb|EJP25866.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
Length = 534
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 12/210 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 19 FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 78
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 79 I--------NTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 130
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 131 ALHSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 190
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 191 RQTLLFSATMPDAIKRIGVKFMKEPTHVKI 220
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 9/215 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++ L S L IS +I+ A+ G ++ IQ + + GRD+IG+A+TGTGKT +FGI
Sbjct: 2 EQELTFSDLGISSEILKAVEDMGYTQPSTIQSQSIPLLLDGRDVIGQAQTGTGKTASFGI 61
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPIS 212
PI+D++ K P L+L PTRELA QVE E + + + C+YGG I
Sbjct: 62 PIIDQVDPTINK------PQALILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGESID 115
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV VVGTPGR++D ++R LNLS++ +VLDEAD+ML +GF +D+E IL
Sbjct: 116 RQIKSLKRGVQIVVGTPGRIMDHMQRRTLNLSQISIIVLDEADEMLDMGFRDDIETILSS 175
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+P+ RQ++ FSATMP I LT KY NP V ++
Sbjct: 176 MPEERQTVFFSATMPKPILDLTRKYQNNPEIVKVL 210
>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
Length = 521
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|139473559|ref|YP_001128275.1| DEAD/DEAH box helicase [Streptococcus pyogenes str. Manfredo]
gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
Manfredo]
Length = 539
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR A+ L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++S +++ ++ R G + PIQ+A + A+QGRD+IG+A+TGTGKT AFG+P+L+KI
Sbjct: 6 LELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPMLEKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
N + LV+APTRELA Q ++E + + VYGG I Q+R L
Sbjct: 66 ANHQL------QGLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDR 119
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P+ RQ+++
Sbjct: 120 PHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQTLL 179
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
FSATMPP I+S+ K++KNP V + + + AD I Y +
Sbjct: 180 FSATMPPAIKSIGVKFMKNPEHVQI--KAKEMTADLIDQYYV 219
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + +L R G + PIQ + A++G D+IG+A+TGTGKT+AFG+P+++
Sbjct: 3 NFSELNISESTLKSLERMGFEEATPIQAGTIPLAVEGHDIIGQAQTGTGKTVAFGVPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K+ + K + LV+APTRELA Q +E H+ + VYGG IS Q+RA
Sbjct: 63 KV---DPKEAAVQ---ALVIAPTRELAIQCSEELHKIGYGKRSKILSVYGGQDISRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR++D IKR L L V+ +VLDEAD+ML++GF ED+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRILDHIKRRTLKLENVKTLVLDEADEMLNMGFIEDINAILENVPAER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+++FSATMPP IR + + ++ P +V +
Sbjct: 177 QTLLFSATMPPAIRKIADTFMTEPQSVKI 205
>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
Length = 539
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 141/207 (68%), Gaps = 10/207 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+ ++SQDI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 5 EFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKI- 63
Query: 163 KFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ NE N + LV+APTRELA Q ++E + VYGG+ I Q++AL
Sbjct: 64 RTNE------NIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALK 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +RQ+
Sbjct: 118 SGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPADRQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP I+ + K++K+P V +
Sbjct: 178 LLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 135/210 (64%), Gaps = 9/210 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GI+ P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 3 NFAALGVEQHWVDALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + + PSL + VYGG + Q+R
Sbjct: 63 KM-NLDKRH-----PQALVIAPTRELALQITQEANILAATEPSLSLLAVYGGQDVERQLR 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+LS V+ +VLDEADQML +GF DVE IL+ +P
Sbjct: 117 KLKGGAQLIIGTPGRLLDHLRRGTLDLSGVKMLVLDEADQMLHMGFLNDVETILQEVPYR 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+M+FSATMP IR L Y+ P+ V +
Sbjct: 177 RQTMLFSATMPAGIRKLARVYMNEPVDVKV 206
>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
str. F0338]
Length = 575
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 137/213 (64%), Gaps = 6/213 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
++ IV AL +GI+ FPIQ L PA+ D+IG+A+TGTGKTL FGIP+L+ +I +
Sbjct: 85 VTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPD 144
Query: 166 EKHG----RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E +P L++ PTREL+KQV + +A L T + +YGG Q+ AL
Sbjct: 145 EPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQISALK 204
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G D VVGTPGR+IDL+++ L+LS V+ VVLDEAD+ML +GF DVE +L R+P +R +
Sbjct: 205 KGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPSHRHT 264
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
M+FSATMP + +L K++++P + DQ
Sbjct: 265 MLFSATMPGPVVALARKFMEHPTHIRAQDPDDQ 297
>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 538
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 134/210 (63%), Gaps = 6/210 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DIVA+L+ GI FPIQ L A+ G D+IG+A+TGTGKTL FGIP L +
Sbjct: 28 FADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQR 87
Query: 161 IIKFNEKHGRGRN----PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ 214
+++ +K P L++APTRELA QV + +++ ++ +YGG P Q
Sbjct: 88 VVREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQ 147
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL G D +VGTPGR+IDL ++ LNL +V+ VVLDEAD+ML +GF DVE IL LP
Sbjct: 148 INALKAGTDVIVGTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALP 207
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+M+FSATMP + ++ +Y+ P +
Sbjct: 208 PVRQAMLFSATMPGAVITMARRYMTRPTHI 237
>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 539
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 134/210 (63%), Gaps = 9/210 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L I ++I A+ G + PIQ + + G D+IG+A+TGTGKT AFGIP++
Sbjct: 6 IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+K+ GR+ L+L PTRELA QV E + + T+ +YGG I HQ++
Sbjct: 66 EKV-------STGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV V+GTPGR+ID ++R L L V V+LDEAD+ML +GF +D+E IL ++
Sbjct: 119 ALKQGVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMPP I+ L+ KY+ +P TV +
Sbjct: 179 RQTLLFSATMPPAIKKLSRKYMNDPQTVSI 208
>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 689
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 137/213 (64%), Gaps = 9/213 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++++I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 34 IQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 93
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 94 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQM 147
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 148 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 207
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+ Q ++FSATMPP ++++ ++YL+NP VD+ G
Sbjct: 208 SAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAG 240
>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 539
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 12/210 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 24 FNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 83
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 84 I--------NTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 135
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 136 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 195
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 196 RQTLLFSATMPDAIKRIGVKFMKEPTHVKI 225
>gi|444398031|ref|ZP_21195514.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
gi|444260688|gb|ELU66996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
Length = 501
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994038]
Length = 524
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
Length = 565
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 12/210 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 110 I--------NTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 162 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 222 RQTLLFSATMPDAIKRIGMKFMKEPTHVKI 251
>gi|419433872|ref|ZP_13973990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379576873|gb|EHZ41797.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
Length = 511
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 144/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 134/213 (62%), Gaps = 3/213 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++ G+ + L + +++AL G K PIQ+ + + G+D++G A+TGTGKT AF
Sbjct: 94 EENGIKFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFA 153
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPI 211
+P L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P
Sbjct: 154 LPALSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPY 213
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ L G VVGTPGRVID + + +L+LS +Q++VLDEAD+ML +GFAEDVE ILE
Sbjct: 214 GPQLAGLRRGAQVVVGTPGRVIDHLNKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILE 273
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
P +Q +FSATMP IR + +YL +P V
Sbjct: 274 GTPDAKQVALFSATMPSSIRKIAQQYLNDPTEV 306
>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|410495268|ref|YP_006905114.1| ATP-dependent RNA helicase DeaD [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|410440428|emb|CCI63056.1| K05592 ATP-dependent RNA helicase DeaD [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
Length = 539
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|429319791|emb|CCP33100.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034183]
Length = 524
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
NCFD 2020]
gi|333905334|ref|YP_004479205.1| DEAD box helicase family protein [Streptococcus parauberis KCTC
11537]
gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
NCFD 2020]
gi|333120599|gb|AEF25533.1| DEAD box helicase family protein [Streptococcus parauberis KCTC
11537]
gi|456371307|gb|EMF50203.1| Cold-shock DEAD-box protein A [Streptococcus parauberis KRS-02109]
gi|457095009|gb|EMG25504.1| Cold-shock DEAD-box protein A [Streptococcus parauberis KRS-02083]
Length = 537
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+K+ + +E + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKV-RTDENIIQ-----ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPAN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKEPEHVQI 204
>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase [Streptococcus pneumoniae CGSP14]
gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|418074418|ref|ZP_12711671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|418079024|ref|ZP_12716246.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418081216|ref|ZP_12718426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|418089950|ref|ZP_12727104.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098916|ref|ZP_12736013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418105697|ref|ZP_12742753.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|418115112|ref|ZP_12752098.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418117270|ref|ZP_12754239.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123922|ref|ZP_12760853.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418128466|ref|ZP_12765359.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|418137658|ref|ZP_12774496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418173983|ref|ZP_12810595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418178645|ref|ZP_12815228.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|418182454|ref|ZP_12819015.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|418217036|ref|ZP_12843716.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|419431974|ref|ZP_13972107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419440778|ref|ZP_13980823.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419465129|ref|ZP_14005020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419469398|ref|ZP_14009266.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419471486|ref|ZP_14011345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419473652|ref|ZP_14013501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419497961|ref|ZP_14037668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419535050|ref|ZP_14074549.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|421281583|ref|ZP_15732380.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|421309995|ref|ZP_15760620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
CGSP14]
gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC0288-04]
gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC3059-06]
gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
700669]
gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae JJA]
gi|353746551|gb|EHD27211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353748487|gb|EHD29139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|353751955|gb|EHD32586.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353761141|gb|EHD41713.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353768898|gb|EHD49420.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353775873|gb|EHD56352.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44500]
gi|353785196|gb|EHD65615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353787951|gb|EHD68349.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353795742|gb|EHD76088.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353798965|gb|EHD79288.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353837939|gb|EHE18020.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353842704|gb|EHE22750.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353850691|gb|EHE30695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353870309|gb|EHE50182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900613|gb|EHE76164.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|379536729|gb|EHZ01915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379544202|gb|EHZ09347.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379546202|gb|EHZ11341.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379550816|gb|EHZ15912.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379563211|gb|EHZ28215.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17457]
gi|379577848|gb|EHZ42765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379598794|gb|EHZ63579.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|379629055|gb|EHZ93656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|395880848|gb|EJG91899.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04672]
gi|395909610|gb|EJH20485.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62681]
Length = 524
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 144/210 (68%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E + LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEATIQ-----ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|385259821|ref|ZP_10037981.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385193235|gb|EIF40614.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 525
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKI 204
>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4]
gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, [Streptococcus pneumoniae R6]
gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
TIGR4]
gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974]
gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974M2]
gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|387626806|ref|YP_006062982.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV104]
gi|387759711|ref|YP_006066689.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV200]
gi|410476960|ref|YP_006743719.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|417679565|ref|ZP_12328961.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|417694475|ref|ZP_12343662.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|417696748|ref|ZP_12345926.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|417698980|ref|ZP_12348151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|418076815|ref|ZP_12714048.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418092190|ref|ZP_12729331.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418096685|ref|ZP_12733796.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418108014|ref|ZP_12745051.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110539|ref|ZP_12747560.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418126249|ref|ZP_12763155.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418130744|ref|ZP_12767627.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139918|ref|ZP_12776743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418144547|ref|ZP_12781342.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418146842|ref|ZP_12783620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418148961|ref|ZP_12785723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418167190|ref|ZP_12803845.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|418169585|ref|ZP_12806227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418180949|ref|ZP_12817518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418185328|ref|ZP_12821869.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|418187578|ref|ZP_12824101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189826|ref|ZP_12826338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418192038|ref|ZP_12828540.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418214793|ref|ZP_12841527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|418221614|ref|ZP_12848267.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418230371|ref|ZP_12856970.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|418234799|ref|ZP_12861375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419423639|ref|ZP_13963852.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419453945|ref|ZP_13993915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419458186|ref|ZP_13998128.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|419478235|ref|ZP_14018059.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419484830|ref|ZP_14024605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419489360|ref|ZP_14029109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419504337|ref|ZP_14044005.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419506481|ref|ZP_14046142.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508671|ref|ZP_14048323.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419510850|ref|ZP_14050491.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419515103|ref|ZP_14054728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419530527|ref|ZP_14070054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421211472|ref|ZP_15668454.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421213518|ref|ZP_15670473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|421215694|ref|ZP_15672615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421221131|ref|ZP_15677964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222508|ref|ZP_15679299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421232303|ref|ZP_15688944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421234489|ref|ZP_15691107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421238220|ref|ZP_15694790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|421243506|ref|ZP_15700021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421245438|ref|ZP_15701936.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421247828|ref|ZP_15704309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|421249814|ref|ZP_15706271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266588|ref|ZP_15717468.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|421271008|ref|ZP_15721862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|421273139|ref|ZP_15723980.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421279376|ref|ZP_15730182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421294878|ref|ZP_15745599.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|421296428|ref|ZP_15747137.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|421301457|ref|ZP_15752127.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|421314475|ref|ZP_15765062.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|444382571|ref|ZP_21180772.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444386260|ref|ZP_21184321.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444387771|ref|ZP_21185787.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444389316|ref|ZP_21187233.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444391706|ref|ZP_21189516.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444394603|ref|ZP_21192154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444398902|ref|ZP_21196377.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444403416|ref|ZP_21200513.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444404127|ref|ZP_21201089.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444407649|ref|ZP_21204316.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444417903|ref|ZP_21213901.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444420547|ref|ZP_21216319.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
gi|61223743|sp|P0A4D7.1|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|61223744|sp|P0A4D8.1|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
TIGR4]
gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|353746955|gb|EHD27613.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353763545|gb|EHD44099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353768406|gb|EHD48930.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353778291|gb|EHD58759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781936|gb|EHD62376.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353796189|gb|EHD76534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353802068|gb|EHD82368.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353807013|gb|EHD87285.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353811297|gb|EHD91539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353812417|gb|EHD92652.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353829182|gb|EHE09316.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353834176|gb|EHE14281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353843021|gb|EHE23066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353848612|gb|EHE28624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|353849563|gb|EHE29568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353853553|gb|EHE33534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353855124|gb|EHE35094.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353869523|gb|EHE49404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353874924|gb|EHE54778.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353885252|gb|EHE65041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353886421|gb|EHE66203.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|353904697|gb|EHE80147.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379529850|gb|EHY95091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379565671|gb|EHZ30663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379573435|gb|EHZ38390.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379581583|gb|EHZ46467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379586211|gb|EHZ51065.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586902|gb|EHZ51752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379605725|gb|EHZ70475.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|379608395|gb|EHZ73141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379611116|gb|EHZ75844.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379626015|gb|EHZ90641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|379631453|gb|EHZ96030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|379635652|gb|EIA00211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395572580|gb|EJG33175.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395579272|gb|EJG39776.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|395579901|gb|EJG40396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395585395|gb|EJG45779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395588676|gb|EJG49004.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395594806|gb|EJG55041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395600343|gb|EJG60500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395603569|gb|EJG63705.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395607005|gb|EJG67105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395607965|gb|EJG68061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395613189|gb|EJG73219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|395613508|gb|EJG73536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866656|gb|EJG77784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395867222|gb|EJG78346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|395874342|gb|EJG85428.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395878869|gb|EJG89931.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395893447|gb|EJH04434.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|395895301|gb|EJH06276.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|395899017|gb|EJH09961.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|395913160|gb|EJH24013.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|406369905|gb|AFS43595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444247988|gb|ELU54509.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444251731|gb|ELU58199.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444251826|gb|ELU58293.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444257916|gb|ELU64249.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444259845|gb|ELU66154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444264468|gb|ELU70543.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444264962|gb|ELU70998.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444269638|gb|ELU75442.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444271245|gb|ELU76996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444277356|gb|ELU82867.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444282368|gb|ELU87637.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444284223|gb|ELU89379.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
Length = 524
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503322|ref|YP_003725262.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387788640|ref|YP_006253708.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|417313062|ref|ZP_12099774.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418083388|ref|ZP_12720585.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|418085577|ref|ZP_12722756.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418094373|ref|ZP_12731500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418101042|ref|ZP_12738126.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418119027|ref|ZP_12755984.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418142096|ref|ZP_12778909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418151090|ref|ZP_12787836.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|418153319|ref|ZP_12790057.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|418164879|ref|ZP_12801548.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|418196212|ref|ZP_12832690.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198412|ref|ZP_12834871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418223785|ref|ZP_12850425.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|418228090|ref|ZP_12854707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419425531|ref|ZP_13965727.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419427644|ref|ZP_13967825.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429784|ref|ZP_13969948.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419436377|ref|ZP_13976465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419438621|ref|ZP_13978689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419445096|ref|ZP_13985111.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|419447242|ref|ZP_13987247.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|419449374|ref|ZP_13989370.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419502236|ref|ZP_14041920.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419519298|ref|ZP_14058904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|419527922|ref|ZP_14067465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|421287857|ref|ZP_15738620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|421290152|ref|ZP_15740902.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|421305543|ref|ZP_15756197.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
TCH8431/19A]
gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353754608|gb|EHD35220.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|353756286|gb|EHD36887.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353764869|gb|EHD45417.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353771503|gb|EHD52012.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353790979|gb|EHD71360.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353806347|gb|EHD86621.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353814300|gb|EHD94526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|353816870|gb|EHD97078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|353829343|gb|EHE09476.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|353860830|gb|EHE40770.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862511|gb|EHE42443.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353878583|gb|EHE58413.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|353880485|gb|EHE60300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379138382|gb|AFC95173.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|379537028|gb|EHZ02213.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379549962|gb|EHZ15064.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379566075|gb|EHZ31066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|379572789|gb|EHZ37746.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|379600449|gb|EHZ65230.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379613198|gb|EHZ77911.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379614782|gb|EHZ79492.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379617837|gb|EHZ82517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379618992|gb|EHZ83666.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379621992|gb|EHZ86628.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379641135|gb|EIA05673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|395886420|gb|EJG97436.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|395887837|gb|EJG98851.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|395904501|gb|EJH15415.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
Length = 524
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|418194167|ref|ZP_12830656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353857745|gb|EHE37707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
Length = 524
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|444426564|ref|ZP_21221977.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240216|gb|ELU51762.1| Cold-shock DEAD-box protein A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 639
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAG 212
>gi|388598566|ref|ZP_10156962.1| ATP-dependent RNA helicase DeaD [Vibrio campbellii DS40M4]
Length = 641
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ G+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-----DLGQ-RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAG 212
>gi|307703245|ref|ZP_07640191.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
gi|307623320|gb|EFO02311.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
Length = 224
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 139/205 (67%), Gaps = 8/205 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+++FSATMP I+ + +++K+P
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDP 199
>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|418103285|ref|ZP_12740357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419475927|ref|ZP_14015764.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419487070|ref|ZP_14026832.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|421209364|ref|ZP_15666377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421225425|ref|ZP_15682163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|353774586|gb|EHD55073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379559023|gb|EHZ24054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379585439|gb|EHZ50295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|395573460|gb|EJG34050.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395588912|gb|EJG49234.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 511
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 634
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 134/212 (63%), Gaps = 9/212 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G +VGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P
Sbjct: 121 ALSRGAHIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDT 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
Q ++FSATMPP ++++ ++YL+ P VD+ G
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLREPARVDVAG 212
>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|433659726|ref|YP_007300585.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
2210633]
gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
gi|432511113|gb|AGB11930.1| Cold-shock DEAD-box protein A [Vibrio parahaemolyticus BB22OP]
Length = 643
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAG 212
>gi|389797680|ref|ZP_10200720.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
gi|388446754|gb|EIM02774.1| DNA/RNA helicase [Rhodanobacter sp. 116-2]
Length = 609
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 130/206 (63%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D+ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I +
Sbjct: 8 LALHPDVQRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIER 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A P + +YGG Q+ +L
Sbjct: 68 ------RPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKR 121
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 122 GVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQVA 181
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR + ++LKNP+ V +
Sbjct: 182 LFSATMPAPIRKIAQRHLKNPVEVTI 207
>gi|417322261|ref|ZP_12108795.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
Length = 643
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTVDVAG 212
>gi|389774439|ref|ZP_10192558.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
gi|388438038|gb|EIL94793.1| DNA/RNA helicase [Rhodanobacter spathiphylli B39]
Length = 638
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 136/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ D++ ALA G PIQ A + P M+GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LELHPDVLRALADVGYESPSPIQAATIPPLMEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
+ K G+ P LVLAPTRELA QV + F + A L + +YGG Q+ +L
Sbjct: 76 -DLKPGK---PQALVLAPTRELAIQVAEAFQKYATHMRGLQVLPIYGGQSYGPQLHSLKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++++VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR + ++LK+P+ V +
Sbjct: 192 LFSATMPTVIRKIAQRHLKDPVEVTI 217
>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
Length = 525
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|392956024|ref|ZP_10321554.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
gi|391878266|gb|EIT86856.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
Length = 514
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 8/205 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L +S +++ ++ G + PIQ+ + A+QG D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELGLSPELLKSINNMGFEEATPIQRDTIPTALQGTDLIGQAQTGTGKTAAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R +VLAPTRELA QV +E ++ + T+ +YGG I Q++AL
Sbjct: 65 ------DVKSRKIQGIVLAPTRELAVQVGEELNKIGQYKGIKTLPIYGGQSIVRQIKALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRVID I R L L +V VVLDEAD+ML++GF ED+E ILE +P R +
Sbjct: 119 GGPHIIVGTPGRVIDHINRKTLKLEDVHTVVLDEADEMLNMGFIEDIETILENVPTERHT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
M+FSATMP I+ L +++K+ L +
Sbjct: 179 MLFSATMPKQIQKLAERFMKDVLII 203
>gi|345889425|ref|ZP_08840430.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
gi|345039614|gb|EGW43936.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
Length = 594
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/204 (46%), Positives = 134/204 (65%), Gaps = 10/204 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +SQ+++ A+ G + PIQ + + G+D +G+A+TGTGKT AFG+PIL+K
Sbjct: 5 FTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I G++ LVL PTRELA QV +E + A + + +YGG PI Q+RA
Sbjct: 65 IAS-------GKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID ++R L LSE + VVLDEAD+ML +GF ED+E+ILE+ P +
Sbjct: 118 LAKGAQVVVGTPGRVIDHLQRGTLRLSEARIVVLDEADEMLDMGFREDIELILEQSPADC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP 301
Q ++FSATMP IR L+ ++L+ P
Sbjct: 178 QRVLFSATMPQPIRELSKRFLREP 201
>gi|387784682|ref|YP_006070765.1| ATP-dependent RNA helicase [Streptococcus salivarius JIM8777]
gi|338745564|emb|CCB95930.1| ATP-dependent RNA helicase [Streptococcus salivarius JIM8777]
Length = 528
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius SK126]
gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius SK126]
Length = 528
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
9312]
Length = 593
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 134/202 (66%), Gaps = 8/202 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+Q I+ +L+ +G PIQKA + M GRD++G+A+TGTGKT AF +P+++K+
Sbjct: 58 FNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNK 117
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
E + + LV+ PTRELA QV K + + + TI +YGGT +Q+ AL V
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKV 172
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR++D I++ ++ + +VLDEAD+ML++GF ED+E I+++LP+N+Q ++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLF 232
Query: 283 SATMPPWIRSLTNKYLKNPLTV 304
SATMP IR++ KYL +P +
Sbjct: 233 SATMPNEIRNIAKKYLNDPAEI 254
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|399055613|ref|ZP_10743308.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398046822|gb|EJL39406.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 529
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 129/205 (62%), Gaps = 9/205 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLAGGDLIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 65 TPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P+ RQ+
Sbjct: 118 QGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
++FSATMPP I+ L +Y+K P T+
Sbjct: 178 LLFSATMPPEIKRLATRYMKQPQTI 202
>gi|336320086|ref|YP_004600054.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336103667|gb|AEI11486.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 581
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 135/208 (64%), Gaps = 8/208 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ D+ +IV ALA GIS FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L +
Sbjct: 42 FADFDVRPEIVQALADAGISHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHR 101
Query: 161 IIKFNEK-----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
I+ +E+ G+ P LV+ PTRELA QV + ++ S+ + VYGG
Sbjct: 102 IVARDEEGYDQLRAPGK-PQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEP 160
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL+ GVD VVGTPGR+ID++K+ L+LS V+ VVLDEAD+ML +GF DVE +L
Sbjct: 161 QIDALNAGVDVVVGTPGRMIDMLKQRHLDLSHVRTVVLDEADEMLDLGFLPDVETLLAAT 220
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNP 301
P +R +M+FSATMP + ++ +Y+ P
Sbjct: 221 PASRHTMLFSATMPGAVVAMARRYMTQP 248
>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
Length = 644
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L+ P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLREPVTVDVAG 212
>gi|424043805|ref|ZP_17781428.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
gi|408888334|gb|EKM26795.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-03]
Length = 644
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L+ P+TVD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLREPVTVDVAG 212
>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 657
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 131/209 (62%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L++ I A+ G + IQ+ + +GRD+ G A+TGTGKT AFGIP+L
Sbjct: 49 LTFADLNLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLL 108
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQM 215
I R LVLAPTRELA QV + F P L+T+ VYGG+P Q+
Sbjct: 109 ASIDTSV------RQVQALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQI 162
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL GV VVGTPGRVID I+R L+LS+V+F+VLDEAD+ML +GFA+DVE + P
Sbjct: 163 RALKTGVHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPA 222
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + ++L NP+ +
Sbjct: 223 DRQVALFSATMPPAIRRVAQRHLTNPVEI 251
>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 434
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 144/224 (64%), Gaps = 12/224 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
++I ++IV +L G + +QK + P ++GRD+I +++TG+GKT AF IPI++ + K
Sbjct: 5 MNIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIINNLKK 64
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
P +V+ PTRELA QV + ++ T VYGG I+ Q+ A+ G
Sbjct: 65 -------SHYPSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEAIRAG 117
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V+ +VGTPGRVIDLIKR L +++F+VLDE D ML +GF +DV+ IL ++PQ +Q+M
Sbjct: 118 VNIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEKQTMF 177
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS-LYSIA 324
FSAT+P IR++TNKY KNP+ +++ DS + D I YSIA
Sbjct: 178 FSATIPSEIRAVTNKYTKNPIIINI--DSKEVTVDTIEHYYSIA 219
>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
Length = 641
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 139/216 (64%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + M+G D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPIS 212
P+L+K+ + ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 63 PLLNKL-ELSQ-----RKPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLRDPITIDVAG 212
>gi|386317378|ref|YP_006013542.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|408401996|ref|YP_006859960.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|417927169|ref|ZP_12570557.1| DEAD/DEAH box helicase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|340765043|gb|EGR87569.1| DEAD/DEAH box helicase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407968225|dbj|BAM61463.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 539
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|418963292|ref|ZP_13515131.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383343407|gb|EID21591.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 565
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 12/210 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 110 I--------NTENPVVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 162 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 222 RQTLLFSATMPDAIKQIGVKFMKEPTHVKI 251
>gi|335030730|ref|ZP_08524212.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
gi|333771191|gb|EGL48148.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
Length = 565
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 12/210 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L+K
Sbjct: 50 FNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEK 109
Query: 161 IIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
I NP+ LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 110 I--------NTENPIVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 161
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 162 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEE 221
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 222 RQTLLFSATMPDAIKRIGVKFMKEPTHVKI 251
>gi|421452972|ref|ZP_15902328.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
gi|400181281|gb|EJO15548.1| ATP-dependent RNA helicase [Streptococcus salivarius K12]
Length = 525
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|340399426|ref|YP_004728451.1| putative ATP-dependent RNA helicase [Streptococcus salivarius
CCHSS3]
gi|387760754|ref|YP_006067731.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius 57.I]
gi|418018420|ref|ZP_12657976.1| putative ATP-dependent RNA helicase [Streptococcus salivarius M18]
gi|338743419|emb|CCB93927.1| putative ATP-dependent RNA helicase exp9 (Exported protein 9)
[Streptococcus salivarius CCHSS3]
gi|339291521|gb|AEJ52868.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
salivarius 57.I]
gi|345527269|gb|EGX30580.1| putative ATP-dependent RNA helicase [Streptococcus salivarius M18]
Length = 528
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
Length = 454
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L ++ +I ALA GI++ F IQ+ L A+ G D+IG+ARTG GKTL FG+P++D++
Sbjct: 11 ELGVAAEICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDRVF 70
Query: 163 ---KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-TIC-VYGGTPISHQMRA 217
+ E G R +++ PTREL QV ++ +A S + +C +YGG P Q+
Sbjct: 71 DDARIPEPDGTAR---AIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQ 127
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
LD GVD +VGTPGR+IDL +RN L LS V+ +VLDEAD+ML +GF D+E IL +P R
Sbjct: 128 LDRGVDIIVGTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDER 187
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+M+FSATMP I +L ++ P+ +
Sbjct: 188 QTMLFSATMPGPILTLARTFMNRPVHI 214
>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
Length = 524
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + R G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIERAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
Length = 663
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 238
>gi|383830775|ref|ZP_09985864.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383463428|gb|EID55518.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 588
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 135/209 (64%), Gaps = 6/209 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L + +++ AL+ G + PIQ A + + G D++G+A TGTGKT AF +P+L
Sbjct: 37 EFGTLGLRPELLRALSDLGYEEPTPIQMAAIPALLDGADVVGQAATGTGKTAAFSLPVLH 96
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRA 217
++ + R P LVL PTRELA QV + + L + VYGG P+ Q+R+
Sbjct: 97 RLADLD----RNGKPSALVLVPTRELAAQVCEAMYRYGRHLGIRVVPVYGGQPMGRQLRS 152
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ GVD VV TPGR +D + R +L+LS+++ VVLDEAD+ML +GFAED++ IL++ P +R
Sbjct: 153 LETGVDVVVATPGRALDHLSRGSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDQTPTDR 212
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+M+FSATMPP I + +YL+ P ++L
Sbjct: 213 QTMLFSATMPPRISGMVRRYLREPRRIEL 241
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 130/204 (63%), Gaps = 4/204 (1%)
Query: 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173
L + GI+ LFPIQ + M G ++IGRARTG GKTLAF +P+++K+++ K R
Sbjct: 110 LKKHGIANLFPIQAMTFDKIMDGNNLIGRARTGMGKTLAFALPVVEKLLQSKIKPVPNRA 169
Query: 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI 233
P + + PTRELA+QV EF + +L+T+C+YGGTP Q A G D V+GT GR++
Sbjct: 170 PRVICVTPTRELARQVTTEFEKLDTTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTGRIM 229
Query: 234 DLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN---RQSMMFSATMPPWI 290
D I R L + +F++LDEAD ML +GF ED++ I + ++ Q ++FSAT+P W+
Sbjct: 230 DHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSATIPKWL 289
Query: 291 RSLTNKYL-KNPLTVDLVGDSDQK 313
+ ++Y+ K V+LV DSD +
Sbjct: 290 HEIADRYMDKKYEFVNLVQDSDDQ 313
>gi|422759291|ref|ZP_16813053.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 539
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + NE + LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI-RTNENIIQ-----ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
suis ST3]
gi|386584595|ref|YP_006080998.1| DEAD/DEAH box helicase [Streptococcus suis D9]
gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
gi|353736741|gb|AER17750.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D9]
Length = 526
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S+DI+ A+ + G PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+ L++APTRELA Q ++E + + VYGG+ I Q++
Sbjct: 61 NKIDTNNQAIQ------ALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF +D+E I+ER+P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKI 204
>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
Length = 643
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|421307797|ref|ZP_15758439.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
gi|395907182|gb|EJH18076.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
Length = 524
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|374672427|dbj|BAL50318.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis IO-1]
Length = 547
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 147/231 (63%), Gaps = 14/231 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T
Sbjct: 173 EARQTLLFSATMPADIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKT 221
>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
Length = 644
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 136/217 (62%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+KI N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKI-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++ + ++L+ P+ VD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLREPVMVDVAG 212
>gi|419493712|ref|ZP_14033437.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|379592285|gb|EHZ57101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
Length = 524
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEVTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
Length = 663
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 238
>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD, partial [Streptococcus
vestibularis ATCC 49124]
gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
49124]
Length = 528
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|418087275|ref|ZP_12724444.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418112928|ref|ZP_12749928.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|418121655|ref|ZP_12758598.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|418162615|ref|ZP_12799297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|418176382|ref|ZP_12812973.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418200618|ref|ZP_12837061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|418219306|ref|ZP_12845971.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418239122|ref|ZP_12865673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419442942|ref|ZP_13982969.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|419455950|ref|ZP_13995907.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419460394|ref|ZP_14000322.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419462742|ref|ZP_14002645.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419491499|ref|ZP_14031237.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419523966|ref|ZP_14063541.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|419526295|ref|ZP_14065854.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|419532799|ref|ZP_14072314.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|421207032|ref|ZP_15664084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|421230207|ref|ZP_15686871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|421236689|ref|ZP_15693286.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|421268751|ref|ZP_15719620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|421275311|ref|ZP_15726140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421285836|ref|ZP_15736612.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|421292475|ref|ZP_15743209.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|421312409|ref|ZP_15763011.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444409691|ref|ZP_21206276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444412727|ref|ZP_21209046.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444415144|ref|ZP_21211388.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444423615|ref|ZP_21219207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|353758291|gb|EHD38883.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353783290|gb|EHD63719.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|353792491|gb|EHD72863.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353827127|gb|EHE07281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|353840453|gb|EHE20517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353864159|gb|EHE44077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|353873666|gb|EHE53525.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353892113|gb|EHE71862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530174|gb|EHY95414.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379530530|gb|EHY95769.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379551642|gb|EHZ16736.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|379556374|gb|EHZ21429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|379557540|gb|EHZ22584.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|379592861|gb|EHZ57676.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379605319|gb|EHZ70070.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|379627926|gb|EHZ92532.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395574368|gb|EJG34946.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|395593733|gb|EJG53975.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|395601452|gb|EJG61599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|395869005|gb|EJG80121.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|395873275|gb|EJG84367.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395885823|gb|EJG96844.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|395891782|gb|EJH02776.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|395909263|gb|EJH20139.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444273966|gb|ELU79621.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444278936|gb|ELU84355.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444280573|gb|ELU85935.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444286587|gb|ELU91558.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
Length = 524
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|433545971|ref|ZP_20502309.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182587|gb|ELK40150.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 549
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 129/206 (62%), Gaps = 9/206 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++K
Sbjct: 24 FSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLAGGDLIGQAQTGTGKTAAFGIPLVEK 83
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
I N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 84 ITPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRAL 136
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P+ RQ
Sbjct: 137 RQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQ 196
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+++FSATMPP I+ L +Y+K P T+
Sbjct: 197 TLLFSATMPPEIKRLATRYMKQPQTI 222
>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C150]
gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C150]
Length = 528
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 129/217 (59%), Gaps = 11/217 (5%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
DDS+ D DI + AA+ G PIQ A + P ++GRD++G A+TGTGKT
Sbjct: 7 DDSAPVSSFD--DFDIDGRVRAAVDEVGYETPSPIQAATIPPLLEGRDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYG 207
AF IP+L +I R P LVLAPTRELA QV + F A P + + +YG
Sbjct: 65 AAFAIPVLSRI------DTSARKPQALVLAPTRELALQVSEAFGRYASKMPEVKVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G Q+ L G +VGTPGRVID + + L+LSE++F+VLDEAD+ML++GFAEDVE
Sbjct: 119 GQSYGVQLSGLRRGAQVIVGTPGRVIDHLDKGTLDLSELEFLVLDEADEMLTMGFAEDVE 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
IL P +Q +FSATMP I L KYL NP V
Sbjct: 179 RILADTPDKKQVALFSATMPASIGRLARKYLNNPQEV 215
>gi|449145896|ref|ZP_21776691.1| cold-shock DEAD-box protein A [Vibrio mimicus CAIM 602]
gi|449078284|gb|EMB49223.1| cold-shock DEAD-box protein A [Vibrio mimicus CAIM 602]
Length = 635
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|374704913|ref|ZP_09711783.1| DEAD-box ATP dependent DNA helicase [Pseudomonas sp. S9]
Length = 558
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 135/203 (66%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L ++Q+I+AAL G + PIQ+ + + G DMIG+A+TGTGKT AF +P+L +I
Sbjct: 9 AALGLTQNILAALTAVGYEEPSPIQQQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSRI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+EVI + +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFQAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+LK+P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLKSP 205
>gi|424809183|ref|ZP_18234568.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
gi|342323608|gb|EGU19392.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus SX-4]
Length = 643
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|417687029|ref|ZP_12336303.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|418160286|ref|ZP_12796985.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|353822019|gb|EHE02195.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
Length = 524
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|451970445|ref|ZP_21923671.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
gi|451933531|gb|EMD81199.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus E0666]
Length = 640
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 136/217 (62%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+KI N+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKI-DLNQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++ + ++L+ P+ VD+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKKIVERFLREPVMVDVAG 212
>gi|417935461|ref|ZP_12578778.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343402370|gb|EGV14875.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 524
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 459
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 137/237 (57%), Gaps = 7/237 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + IV +L GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L +
Sbjct: 6 FADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQR 65
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA----PSLDTICVYGGTPISHQMR 216
I+ + +GR P LV+ PTRELA QV + ++ PS+ + +YGG Q+R
Sbjct: 66 ILDEQSRE-QGRAPRALVVVPTRELAHQVADDLRVASRTFSPSI--VTIYGGKDFEPQIR 122
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G D VVGTPGR++DL R LN S + V DEAD+ML +GF DVE I+ LP
Sbjct: 123 ALKDGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAK 182
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
RQ+M+FSATMP + +L +Y+ P + SD + + + +M K E
Sbjct: 183 RQTMLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTE 239
>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 731
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 137/206 (66%), Gaps = 5/206 (2%)
Query: 104 LDISQD--IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
LD+ D ++AA+ G + PIQ+A + + GRD++G A+TGTGKT AF +P L ++
Sbjct: 75 LDLGLDARVLAAVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRL 134
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPISHQMRAL 218
+ ++ +GR P L LAPTRELA Q+ + F A L + VYGG+P Q+ AL
Sbjct: 135 AEASDVNGRANAPQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSAL 194
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VVGTPGRVID I+R +L+LS++Q +VLDEAD+ML +GFAE+V+ IL P ++Q
Sbjct: 195 RRGAQVVVGTPGRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASKQ 254
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+ +FSATMPP IR ++ +YL +P V
Sbjct: 255 TALFSATMPPAIRRISAQYLNSPEEV 280
>gi|415749990|ref|ZP_11477934.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|381318284|gb|EIC59009.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
Length = 511
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++ + + G ++ PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLEEIEKAGFVEVSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 135/207 (65%), Gaps = 10/207 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
++++S+D V AL G + IQK + MQG D+IG+A+TGTGKT AFGIPI+
Sbjct: 9 EIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIV---- 64
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDY 220
EK + R P LVL PTRELA QV +E + + L + +YGG I Q++AL
Sbjct: 65 ---EKTTKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKN 121
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQS 279
G ++GTPGR+ID IKR L LS++ +VLDEAD+ML +GF ED+E I++ + +N Q+
Sbjct: 122 GAQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP I +LT KY+KNP V +
Sbjct: 182 LLFSATMPDPIMALTKKYMKNPKVVSI 208
>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 529
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 9/205 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 65 TPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P RQ+
Sbjct: 118 QGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPDERQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
++FSATMPP I+ L +Y+K P T+
Sbjct: 178 LLFSATMPPEIKRLATRYMKQPQTI 202
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 153/252 (60%), Gaps = 9/252 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
V + + DE L +S IS+ + L ++GIS LF IQ A + G+D++ RARTGT
Sbjct: 58 VVEETDNSDEKLALSNFRISEGTIENLEKKGISSLFEIQAATFDTIYDGKDVLARARTGT 117
Query: 148 GKTLAFGIPILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV 205
GKTLAF IP+++++ + N + RGR+P LVL PTR+LAKQV +F + S L T+ V
Sbjct: 118 GKTLAFAIPVVERLALDKNYRERRGRSPRVLVLCPTRDLAKQVCGDFEQVSGNRLKTLPV 177
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAE 264
YGG P + Q GVD VVGTPGR++D IK + L +++F+VLDEAD+ML GF E
Sbjct: 178 YGGVPYNEQTSVFREGVDVVVGTPGRILDHIKFGNMKLHDLKFIVLDEADEMLDARGFEE 237
Query: 265 DVEVILERLPQNR-----QSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGI 318
D+ +L + + + Q+++FSAT+P + ++LK +DL+G++ + I
Sbjct: 238 DMFNLLSSIQEQKETRDYQTLLFSATVPESVMQTIQRFLKEDYERIDLIGNAKNRTNTNI 297
Query: 319 SLYSIATSMNMQ 330
++ +S + +
Sbjct: 298 RHIAMPSSYHTR 309
>gi|389857075|ref|YP_006359318.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
gi|353740793|gb|AER21800.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
Length = 514
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S+DI+ A+ + G PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+ L++APTRELA Q ++E + + VYGG+ I Q++
Sbjct: 61 NKIDTNNQAIQ------SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF +D+E I+ER+P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKI 204
>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 640
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+ G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
Q +FSATMPP IR + YLK+P V +
Sbjct: 185 QVALFSATMPPAIRRIAQTYLKDPAEVTIA 214
>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9303]
Length = 636
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 137/212 (64%), Gaps = 12/212 (5%)
Query: 101 ISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+S+ D S+ ++ LA +G + PIQKA + M GRD++G+A+TGTGKT AF +P+
Sbjct: 82 VSEFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPL 141
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQ 214
++++ + HG P LVLAPTRELA QV F A P L + VYGG Q
Sbjct: 142 IERL----QDHGS--RPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQ 195
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L GVD VVGTPGR++D +++ L+ S ++ +VLDEAD+ML +GF +DVE ILE+LP
Sbjct: 196 INTLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLP 255
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ ++FSATMP IR L+ +YL P + +
Sbjct: 256 KERQMVLFSATMPSEIRRLSKRYLHEPAEITI 287
>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
Length = 643
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
Length = 643
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|336176951|ref|YP_004582326.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334857931|gb|AEH08405.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 694
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 134/206 (65%), Gaps = 4/206 (1%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++IV AL +GI FPIQ+ L A+ G D+IG+ARTGTGKTLAFGIP+ +
Sbjct: 41 FADLGVREEIVEALRAKGIVSPFPIQELTLPLALAGSDIIGQARTGTGKTLAFGIPLAQQ 100
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRAL 218
+E G P LV+ PTREL QV + S L + VYGG Q+ +L
Sbjct: 101 ATSRDE--GASGQPQALVVVPTRELCLQVTADIDRAGSGRGLRVLPVYGGRAYEPQLASL 158
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL ++NAL L+ V+ +VLDEAD+ML +GF DVE IL +LP RQ
Sbjct: 159 RAGVDIVVGTPGRLLDLARQNALVLTAVRMLVLDEADEMLDLGFLPDVERILAQLPDIRQ 218
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+++FSATMPP + SL ++++ P+ V
Sbjct: 219 TLLFSATMPPPVISLARRFMRRPVHV 244
>gi|386586651|ref|YP_006083053.1| DEAD/DEAH box helicase [Streptococcus suis D12]
gi|353738797|gb|AER19805.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D12]
Length = 526
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S+DI+ A+ + G PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+ L++APTRELA Q ++E + + VYGG+ I Q++
Sbjct: 61 NKIDTNNQAI------QALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF +D+E I+ER+P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIETIIERVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKI 204
>gi|398814336|ref|ZP_10573017.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398036605|gb|EJL29814.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 529
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 128/205 (62%), Gaps = 9/205 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S + + I+ A+ G + PIQ A + + G D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPLVEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
N +VL PTRELA QV E + + T+ +YGG I HQ+RAL
Sbjct: 65 TPANRVQ-------AIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALR 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV VVGTPGRV+D ++R L L V +VLDEAD+ML +GF ED+E I+ +P RQ+
Sbjct: 118 QGVQIVVGTPGRVMDHLRRKTLKLDNVHTLVLDEADEMLDMGFIEDIETIINHMPDERQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
++FSATMPP I+ L +Y+K P T+
Sbjct: 178 LLFSATMPPEIKRLATRYMKQPQTI 202
>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
Length = 449
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|253756028|ref|YP_003029168.1| DEAD/DEAH box helicase [Streptococcus suis BM407]
gi|386580466|ref|YP_006076871.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|386582541|ref|YP_006078945.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|386588666|ref|YP_006085067.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|403062015|ref|YP_006650231.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|353734687|gb|AER15697.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|354985827|gb|AER44725.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|402809341|gb|AFR00833.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
Length = 514
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L +S+DI+ A+ + G PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+ L++APTRELA Q ++E + + VYGG+ I Q++
Sbjct: 61 NKIDTNNQAIQ------SLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF +D+E I+ER+P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKI 204
>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|385829922|ref|YP_005867735.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis CV56]
gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
subsp. lactis CV56]
Length = 547
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 147/231 (63%), Gaps = 14/231 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T
Sbjct: 173 EARQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKT 221
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 142/230 (61%), Gaps = 12/230 (5%)
Query: 81 QSAVD-DYVAYDDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
QSA D D A ++S + D+S KL + DI+ A+ + G PIQ + + GR
Sbjct: 89 QSADDEDARAAENSEGTDSTDLSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGR 148
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PI+ +I K N R+P LVLAPTRELA QV F E A
Sbjct: 149 DVVGLAQTGTGKTAAFALPIIARIDKSN------RSPQALVLAPTRELALQVADAFQEFA 202
Query: 198 P---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
++ + +YGG Q+ L G +VGTPGRVID +K+ +L++S + ++VLDEA
Sbjct: 203 DHVGGINVLPIYGGQAYGIQLSGLRRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEA 262
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
D+ML++GF EDVE ILE P +Q +FSATMP IR L+ +YL +P V
Sbjct: 263 DEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEV 312
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 17/245 (6%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++I+ A+A G + PIQK + AMQG+D+IG+A+TGTGKT AFGIPIL +I
Sbjct: 13 ELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQRID 72
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDY 220
K G P +VL+PTRELA Q +E + A ++ TI +YGG I Q RAL
Sbjct: 73 --TSKPG----PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKK 126
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+ +V TPGR++D +KR ++LS VQ VLDE D+M+ +GF +D+ I+ P+ RQ++
Sbjct: 127 KTNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTL 186
Query: 281 MFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMNMQK 331
FSATMP IR L N +L P +T+DL+ +L D ++ ++MQ
Sbjct: 187 FFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLDMQS 246
Query: 332 VENAL 336
E A+
Sbjct: 247 PELAI 251
>gi|407686365|ref|YP_006801538.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289745|gb|AFT94057.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 596
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP I+ +T +YLK+P V +
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKI 211
>gi|419521514|ref|ZP_14061109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379538814|gb|EHZ03994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
Length = 524
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 161/289 (55%), Gaps = 33/289 (11%)
Query: 48 DDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDIS 107
D+ + FS + +H I +FK+ + ++ + D+ K++ L S I+
Sbjct: 62 DNKKNNYFSKKCKNYHKIR---EFKN--VNIQCKEVDEENILQDEEKKNKELFSSIPQIN 116
Query: 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF--- 164
Q IV L +GI + IQ P +G D+IGR+ TG+GKT+AF +P+++K+ K
Sbjct: 117 QKIVEFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPLVEKLYKNIES 176
Query: 165 ----------------------NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SL 200
N+ ++P LVL PTREL+KQVE F E + +
Sbjct: 177 QKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETTFKEISQFYNF 236
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
+ + +YGG ++Q L G+ + GTPGR+ID I++ L+L +++VVLDEAD+ML++
Sbjct: 237 NIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVVLDEADEMLNL 296
Query: 261 GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
GF D+E IL + ++ Q +++SAT P WI+ +++KYLKNP+ +D++
Sbjct: 297 GFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVIN 345
>gi|424030057|ref|ZP_17769555.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
gi|408883063|gb|EKM21857.1| cold-shock DEAD box protein A [Vibrio cholerae HENC-01]
Length = 643
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 139/217 (64%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L++P+T+D+ G
Sbjct: 176 HAPESAQRVLFSATMPPMLKNIVERFLRDPVTIDVAG 212
>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
17982]
gi|153798516|gb|EDN80936.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 722
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 12/220 (5%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
DD + +E D + L + ++I+AA+ G PIQ A + P ++ RD++G A+TGT
Sbjct: 34 DDHADEEDTDTVTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGT 93
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTIC 204
GKT AFG+P+L I+ +E RN LVLAPTRELA Q + +F LD +
Sbjct: 94 GKTAAFGLPLL-AIVDADE-----RNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVP 147
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAE
Sbjct: 148 VYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAE 207
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
DVE I P +R + +FSATMP I + ++LK+P+ V
Sbjct: 208 DVETIASSAPDDRLTALFSATMPAAIEKVAREHLKDPVKV 247
>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
Length = 722
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 12/220 (5%)
Query: 91 DDSSKDEGLD---ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
DD + +E D + L + ++I+AA+ G PIQ A + P ++ RD++G A+TGT
Sbjct: 34 DDHADEEDTDTVTFASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGT 93
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTIC 204
GKT AFG+P+L I+ +E RN LVLAPTRELA Q + +F LD +
Sbjct: 94 GKTAAFGLPLL-AIVDADE-----RNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVP 147
Query: 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264
VYGG+P Q+ AL G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAE
Sbjct: 148 VYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAE 207
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
DVE I P +R + +FSATMP I + ++LK+P+ V
Sbjct: 208 DVETIASSAPDDRLTALFSATMPAAIEKVAREHLKDPVKV 247
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 142/230 (61%), Gaps = 12/230 (5%)
Query: 81 QSAVD-DYVAYDDSSKDEGLDIS--KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
QSA D D A ++S + D+S KL + DI+ A+ + G PIQ + + GR
Sbjct: 89 QSADDEDARAAENSEGTDSTDLSFDKLGLPSDILEAVKKVGFETPSPIQARTIPALLDGR 148
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PI+ +I K N R+P LVLAPTRELA QV F E A
Sbjct: 149 DVVGLAQTGTGKTAAFALPIIARIDKSN------RSPQALVLAPTRELALQVADAFQEFA 202
Query: 198 P---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
++ + +YGG Q+ L G +VGTPGRVID +K+ +L++S + ++VLDEA
Sbjct: 203 DHVGGINVLPIYGGQAYGIQLSGLRRGAHIIVGTPGRVIDHLKKGSLDISHLDYLVLDEA 262
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
D+ML++GF EDVE ILE P +Q +FSATMP IR L+ +YL +P V
Sbjct: 263 DEMLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEV 312
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 148/249 (59%), Gaps = 20/249 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +K+
Sbjct: 10 GEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKV 69
Query: 162 -IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 70 NPKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF ED+E IL+++P + R
Sbjct: 123 RFGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEER 182
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMN 328
Q M+FSATMPP I+ L Y+ P LTV L+ + D I + ++ ++
Sbjct: 183 QVMLFSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCRIID 242
Query: 329 MQKVENALF 337
M+ + A+
Sbjct: 243 MEDIGQAII 251
>gi|418038567|ref|ZP_12676896.1| hypothetical protein LLCRE1631_01703 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354693215|gb|EHE92992.1| hypothetical protein LLCRE1631_01703 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 547
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 147/231 (63%), Gaps = 14/231 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T
Sbjct: 173 EARQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKT 221
>gi|406595506|ref|YP_006746636.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407682465|ref|YP_006797639.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|406372827|gb|AFS36082.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
gi|407244076|gb|AFT73262.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 596
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP I+ +T +YLK+P V +
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKI 211
>gi|433605028|ref|YP_007037397.1| Cold-shock DEAD box protein A [Saccharothrix espanaensis DSM 44229]
gi|407882881|emb|CCH30524.1| Cold-shock DEAD box protein A [Saccharothrix espanaensis DSM 44229]
Length = 581
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 141/237 (59%), Gaps = 10/237 (4%)
Query: 77 WQHAQSAVDDYVAY-----DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLE 131
W+ + AV + A D+ D+ + L + +++ AL+ G + PIQ+ +
Sbjct: 7 WRTPRRAVAERSARLDAMTADAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIP 66
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
P GRD++G+A TGTGKT AF +P+L+++ + R P+ LVL PTRELA QV +
Sbjct: 67 PLTDGRDLLGQAATGTGKTAAFALPVLERMAEGGRTE---RAPMALVLVPTRELAVQVSE 123
Query: 192 EFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
H + + +YGG PI Q+R L+ GVD VV TPGR +D + R L L ++ V
Sbjct: 124 AVHRYGREIGARVLPIYGGQPIGRQLRVLEQGVDVVVATPGRAVDHLNRGTLKLEHLEVV 183
Query: 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
VLDEAD+ML +GFAED++ IL P+ RQ+++FSATMP I L ++L +P+ + +
Sbjct: 184 VLDEADEMLDMGFAEDLDAILAEAPEQRQTVLFSATMPGRIDRLARQHLTDPVRITI 240
>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis KF147]
gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. lactis KF147]
Length = 547
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 147/231 (63%), Gaps = 14/231 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +S+ IV L G + PIQ+ ++ A++GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S L V+GG+ I Q
Sbjct: 61 EKI--------DASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++ L G VVGTPGR++DLIKR A+ L +++ ++LDEAD+ML++GF ED+ I+E+ P
Sbjct: 113 IKGLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
+ RQ+++FSATMP I+ + K++KNP + + + + AD I Y + T
Sbjct: 173 EARQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYFVKT 221
>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
Length = 639
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P+ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPETAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|392329574|ref|ZP_10274190.1| putative ATP-dependent RNA helicase [Streptococcus canis FSL
Z3-227]
gi|391419446|gb|EIQ82257.1| putative ATP-dependent RNA helicase [Streptococcus canis FSL
Z3-227]
Length = 539
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 142/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQ 214
+KI R ++ + LV+APTRELA Q ++E + VYGG+ I Q
Sbjct: 61 NKI--------RTKDNIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALVLEHVETLILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 173 ADRQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
Length = 653
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 228
>gi|363422948|ref|ZP_09311020.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
gi|359732360|gb|EHK81377.1| dead/deah box helicase [Rhodococcus pyridinivorans AK37]
Length = 626
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 131/206 (63%), Gaps = 9/206 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + LDI ++ AL+ G PIQ A + P ++GRD++G A+TGTGKT AF +PIL
Sbjct: 15 LTFADLDIDARVLQALSDVGYESPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPIL 74
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
+I ++ P LVLAPTRELA QV + F + + P L + +YGG Q+
Sbjct: 75 SRIDTSVKR------PQALVLAPTRELALQVAEAFGKYSVHIPGLSVLPIYGGQAYGVQL 128
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L G +VGTPGRVID + + L++SE++F+VLDEAD+ML++GF EDVE IL P
Sbjct: 129 SGLRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPD 188
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
+Q +FSATMP IR L+ +YLK+P
Sbjct: 189 TKQVALFSATMPGAIRRLSKQYLKDP 214
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 132/203 (65%), Gaps = 8/203 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGSDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F G+ CL+L PTRELA Q+ E + + VYGG I Q++
Sbjct: 61 NS---FGSNDGK---VFCLILTPTRELAIQINDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVKYLVIDEADEMLDMGFIDDIKEIINHTNEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLK 299
RQ+MMFSATMP I+SL KY+K
Sbjct: 175 RQTMMFSATMPDEIKSLAKKYMK 197
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 133/199 (66%), Gaps = 7/199 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S +++ A+ G SK IQ+ + + G D+IG+A+TGTGKTLAFG +L KI
Sbjct: 7 NELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
K P ++L+PTRELA Q+ +E + CVYGG+ I Q+R +
Sbjct: 67 TPSQRKL-----PQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G+D +VGTPGRV+DL++RN L L++V+FVVLDEAD+ML++GF ED+E ILE++ +RQ+
Sbjct: 122 KGIDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQT 181
Query: 280 MMFSATMPPWIRSLTNKYL 298
++FSATMP I+ + Y+
Sbjct: 182 ILFSATMPAGIKKIAQNYM 200
>gi|342164201|ref|YP_004768840.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
gi|341934083|gb|AEL10980.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
Length = 524
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + ++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLVLEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|419842756|ref|ZP_14366093.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|421277111|ref|ZP_15727931.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|385703701|gb|EIG40814.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|395876392|gb|EJG87468.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
Length = 524
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 13 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 72
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 73 KL-NLDKRH-----PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLR 126
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 127 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 186
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+M+FSATMP IR L Y+ P+ V
Sbjct: 187 RQTMLFSATMPAGIRKLARVYMNEPVDV 214
>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 861
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 136/215 (63%), Gaps = 9/215 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
KDEG+ + L + +D++ A+ G IQK + + GRD++G A+TGTGKT AFG
Sbjct: 157 KDEGITFTDLGLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFG 216
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPI 211
+P+LD + R LVLAPTRELA Q + + A LD + VYGG P
Sbjct: 217 LPLLDAV------DSRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPY 270
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL G VVGTPGRVIDLI + AL L +V++ VLDEAD+ML +GFAEDVE I +
Sbjct: 271 GPQIGALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQ 330
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
LP +R++ +FSATMPP I+++ ++L P+ V++
Sbjct: 331 SLPTDRRTALFSATMPPAIQAVARQHLHEPVQVEV 365
>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
Length = 641
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L+++ I++AL G PIQ A + +QG D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSDLELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P + Q ++FSATMPP ++++ ++L++P+TVD+ G
Sbjct: 176 HAPSSAQRVLFSATMPPMLKNIVERFLRDPVTVDVAG 212
>gi|449889270|ref|ZP_21787529.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
gi|450039476|ref|ZP_21836209.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449200387|gb|EMC01417.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449250267|gb|EMC48338.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
Length = 517
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 146/221 (66%), Gaps = 19/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +++DI++A+A+ G + IQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELHLAEDILSAVAKVGFVEPSSIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDVTN-------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 114 KALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPE 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + K++K P LT DLV
Sbjct: 174 TRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLV 214
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 138/225 (61%), Gaps = 8/225 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+A D + + ++++S + A+ G + PIQ + MQG+D+IG+A+TGT
Sbjct: 7 IANDQDKAKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGT 66
Query: 148 GKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICV 205
GKT FGIP+ + + N + GR + LVL PTRELA QV +E + L + V
Sbjct: 67 GKTATFGIPMAETL---NPRDGRVQ---ALVLCPTRELAIQVAQEISKIGRQNDLKALPV 120
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
YGG I Q+RAL YGV V+GTPGR++D + R L L+ V+ VVLDEAD+ML +GF ED
Sbjct: 121 YGGQSIDRQIRALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVED 180
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
+E IL+ P+ RQ+++FSATMP I+ L +Y+K P V + D
Sbjct: 181 IEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDK 225
>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
Length = 663
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 238
>gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
paramesenteroides ATCC 33313]
gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
paramesenteroides ATCC 33313]
Length = 512
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 141/220 (64%), Gaps = 17/220 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L ++QD++ A+ + G + PIQ+ + M G+D+IG+A+TGTGKT AFG+PIL
Sbjct: 1 MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+ I N ++ LV++PTRELA Q + E + + V+GG I Q+
Sbjct: 61 EMIDNEN------KDVQALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQIN 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L++G VVGTPGR+ID I+R +NLS V+ +VLDEAD+ML++GF ED+E IL+ +P
Sbjct: 115 GLNHGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMPP I+ + +++ NP LT DLV
Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLV 214
>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
Length = 673
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 136/213 (63%), Gaps = 9/213 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ +I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV K L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+ Q ++FSATMPP ++++ ++YL+NP VD+ G
Sbjct: 180 SAQRVLFSATMPPMVKTIVDRYLRNPARVDVAG 212
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ + L + Q V AL +GIS P+Q+ + M+G+D+I A TGTGKTLAF +PIL
Sbjct: 3 NFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQ 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMR 216
K+ +++H P LV+APTRELA Q+ +E + PSL + VYGG + Q+R
Sbjct: 63 KL-NLDKRH-----PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLR 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G ++GTPGR++D ++R L+L ++ +VLDEADQML +GF DVE IL+ +P
Sbjct: 117 KLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYR 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+M+FSATMP IR L Y+ P+ V +
Sbjct: 177 RQTMLFSATMPAGIRKLARVYMNEPVDVKV 206
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 150/250 (60%), Gaps = 21/250 (8%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ S+L+IS+ + +L R G + PIQ + A++G D+IG+A+TGTGKT+AFG+P+++
Sbjct: 3 NFSELNISESTLKSLQRMGFEEATPIQAGTIPLAVEGHDIIGQAQTGTGKTVAFGVPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
I NE + LV+APTRELA Q +E H+ + VYGG I Q+RA
Sbjct: 63 NI-DPNETSIQ-----ALVIAPTRELAIQCSEEIHKIGYGKRSKILSVYGGQDIGRQIRA 116
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L +VGTPGR++D IKR L L V+ +VLDEAD+ML++GF ED+ ILE +P R
Sbjct: 117 LKNKPQIIVGTPGRILDHIKRRTLKLENVKTLVLDEADEMLNMGFIEDINAILENVPNER 176
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS----------- 326
Q+++FSATMPP IR + + ++ P +V + + + D I Y + +
Sbjct: 177 QTLLFSATMPPAIRKIADTFMTEPQSVKI--KAKELTVDNIDQYFVKSQEREKFDILSRL 234
Query: 327 MNMQKVENAL 336
+N+QK E A+
Sbjct: 235 LNVQKPELAI 244
>gi|417092627|ref|ZP_11957243.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
gi|353532306|gb|EHC01978.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
Length = 523
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S+DI+ A+ + G PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI N+ L++APTRELA Q ++E + + VYGG+ I Q++
Sbjct: 61 NKIDINNQA------VQALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF +D+E I+ER+P +
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPAS 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K P V +
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKI 204
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 138/214 (64%), Gaps = 10/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S+L++SQ I+ A+ G + PIQ + M+G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESITFSQLNLSQSIINAIKDIGYEEPTPIQAQAIPLIMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
L+ + +FN+ LVL PTRELA QV E + + L + +YGG +
Sbjct: 62 ALELVDPEFNDVQ-------VLVLCPTRELANQVADELTKLSAYQKLRILPIYGGQSLDR 114
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRV+D I+R LNL V VVLDEAD+ML +GF ED+E+IL ++
Sbjct: 115 QIKALRRGVHIIIGTPGRVMDHIERKTLNLENVAMVVLDEADEMLDMGFREDIELILTKV 174
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P +RQ+++FSATMP I LT ++ ++P V +
Sbjct: 175 PDDRQTILFSATMPALIMKLTKRFQRDPQLVKTI 208
>gi|336118869|ref|YP_004573641.1| ATP-dependent RNA helicase [Microlunatus phosphovorus NM-1]
gi|334686653|dbj|BAK36238.1| putative ATP-dependent RNA helicase [Microlunatus phosphovorus
NM-1]
Length = 505
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 134/202 (66%), Gaps = 6/202 (2%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK- 167
DIVAALA+ GI FPIQ+ + A+ G DMIG+ARTGTGKTLAFGI L +I+ +E+
Sbjct: 4 DIVAALAQVGIVHPFPIQQMSIPIALTGTDMIGQARTGTGKTLAFGITALQRIVVPSERD 63
Query: 168 ---HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222
+ P L++ PTRELA QV K+ ++ + VYGG Q+ AL GV
Sbjct: 64 FELQAKPGAPQALIVTPTRELALQVSKDLTTASSIRKARVLTVYGGVGYEPQLDALAAGV 123
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+ VVGTPGR++DL R +L+LS ++ +VLDEAD+ML +GF DVE IL + P+ RQ+M+F
Sbjct: 124 EVVVGTPGRLLDLADRGSLDLSHIKVLVLDEADEMLDLGFLPDVERILAKTPELRQTMLF 183
Query: 283 SATMPPWIRSLTNKYLKNPLTV 304
SATMP I +L +L++P+ +
Sbjct: 184 SATMPSAIVALARHHLRHPVNI 205
>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
Length = 594
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 134/204 (65%), Gaps = 10/204 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L +SQ+++ A+ G + PIQ + + G+D +G+A+TGTGKT AFG+PIL+K
Sbjct: 5 FTELGLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I G++ LVL PTRELA QV +E + A + + +YGG PI Q+RA
Sbjct: 65 IAS-------GKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVID ++R L L+E + VVLDEAD+ML +GF ED+E+ILE+ P +
Sbjct: 118 LAKGAQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP 301
Q ++FSATMP IR L+ ++L+ P
Sbjct: 178 QRVLFSATMPQPIRELSKRFLREP 201
>gi|421488009|ref|ZP_15935407.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369971|gb|EJP22968.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 525
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSTELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|357239848|ref|ZP_09127182.1| DEAD/DEAH box helicase [Streptococcus ictaluri 707-05]
gi|356751604|gb|EHI68756.1| DEAD/DEAH box helicase [Streptococcus ictaluri 707-05]
Length = 569
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 146/215 (67%), Gaps = 10/215 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
K++ L ++ ++S+DI +A+ K PIQ+ + A++G+D+IG+A+TGTGKT AFG
Sbjct: 19 KEKQLKFTEFNLSEDIQSAVVTARFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFG 78
Query: 155 IPILDKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPI 211
+P L+KI + +E N + LV+APTRELA Q ++E + VYGG+ I
Sbjct: 79 LPTLNKI-RTDE------NIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSI 131
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q++AL G VVGTPGR++DLIKR AL L +V+ ++LDEAD+ML++GF ED+E I+
Sbjct: 132 EKQIKALKSGAHIVVGTPGRLLDLIKRKALRLEQVETLILDEADEMLNMGFLEDIEAIIS 191
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
R+P +RQ+++FSATMP I+ + K++K+P V +
Sbjct: 192 RVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQI 226
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 17/245 (6%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++I+ A+A G + PIQK + AMQG+D+IG+A+TGTGKT AFGIPIL +I
Sbjct: 7 ELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQRID 66
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDY 220
K G P +VL+PTRELA Q +E + A ++ TI +YGG I Q RAL
Sbjct: 67 --TSKPG----PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKK 120
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+ +V TPGR++D +KR ++LS VQ VLDE D+M+ +GF +D+ I+ P+ RQ++
Sbjct: 121 KPNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTL 180
Query: 281 MFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMNMQK 331
FSATMP IR L N +L P +T+DL+ +L D ++ ++MQ
Sbjct: 181 FFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLLDMQS 240
Query: 332 VENAL 336
E A+
Sbjct: 241 PELAI 245
>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 543
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L ++L++S +I+ A+ G + PIQ + M G D+IG+++TGTGKT AFGIP+L
Sbjct: 4 LKFNELNLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
+K + + + ++L PTRELA QV +E F + ++ + VYGG PI QM
Sbjct: 64 EKT------NAKNKAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQM 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL G V+GTPGRVID ++R L L V+LDEAD+ML +GF +D+E+IL+ +P+
Sbjct: 118 IALSKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPE 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309
RQ++ FSATMP SLT KY +P T+ +V +
Sbjct: 178 GRQTVFFSATMPKEFLSLTKKYQHSPETIKVVSE 211
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 135/202 (66%), Gaps = 9/202 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFALPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKN 300
+++FSATMP W++ ++ KYL++
Sbjct: 252 TLLFSATMPAWVKEISEKYLRD 273
>gi|365832932|ref|ZP_09374458.1| hypothetical protein HMPREF1021_03222 [Coprobacillus sp. 3_3_56FAA]
gi|365259765|gb|EHM89748.1| hypothetical protein HMPREF1021_03222 [Coprobacillus sp. 3_3_56FAA]
Length = 297
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 133/199 (66%), Gaps = 7/199 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S +++ A+ G SK IQ+ + + G D+IG+A+TGTGKTLAFG +L KI
Sbjct: 7 NELGLSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
K P ++L+PTRELA Q+ +E + CVYGG+ I Q+R +
Sbjct: 67 TPSQRKL-----PQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G+D +VGTPGRV+DL++RN L L++V+FVVLDEAD+ML++GF ED+E ILE++ +RQ+
Sbjct: 122 KGIDIIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQT 181
Query: 280 MMFSATMPPWIRSLTNKYL 298
++FSATMP I+ + Y+
Sbjct: 182 ILFSATMPAGIKKIAQNYM 200
>gi|339009468|ref|ZP_08642040.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|421872706|ref|ZP_16304323.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
gi|338773946|gb|EGP33477.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|372458121|emb|CCF13872.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
Length = 529
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 133/205 (64%), Gaps = 8/205 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L + ++++ A+ G + PIQ A + ++G D+IG+A+TGTGKT AFGIP+ + +
Sbjct: 5 SDLALHKNVLQAIHDMGFEEPSPIQAACIPKILEGGDLIGQAQTGTGKTAAFGIPLAEVL 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N + +VL PTRELA QV E + T+ +YGG ISHQ+RAL
Sbjct: 65 NPTNNR------IQAIVLTPTRELAIQVAGELVRICKYKKIRTLPIYGGQSISHQIRALR 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGRV+D ++R L+L V+ +VLDEAD+ML +GF ED+E IL + RQ+
Sbjct: 119 QGVHVVIGTPGRVLDHLRRKTLHLENVKMLVLDEADEMLDMGFIEDIETILSHMKAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
++FSATMPP I+ L ++Y+KNP TV
Sbjct: 179 LLFSATMPPEIKRLAHRYMKNPETV 203
>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|360037704|ref|YP_004939466.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|379744210|ref|YP_005335262.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|417811754|ref|ZP_12458415.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|417816943|ref|ZP_12463573.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|418330362|ref|ZP_12941343.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|418337842|ref|ZP_12946737.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|418341896|ref|ZP_12948726.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|418349516|ref|ZP_12954248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|418353968|ref|ZP_12956693.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|419826238|ref|ZP_14349741.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|421317541|ref|ZP_15768111.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|421320180|ref|ZP_15770738.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|421324222|ref|ZP_15774749.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|421327193|ref|ZP_15777711.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|421332285|ref|ZP_15782764.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|421335923|ref|ZP_15786386.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|421339731|ref|ZP_15790165.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|421346512|ref|ZP_15796896.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|422889725|ref|ZP_16932194.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|422898635|ref|ZP_16935924.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|422904683|ref|ZP_16939575.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|422915030|ref|ZP_16949479.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|422927691|ref|ZP_16960635.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|423146762|ref|ZP_17134250.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|423147752|ref|ZP_17135130.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|423151539|ref|ZP_17138770.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|423158165|ref|ZP_17145178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|423161967|ref|ZP_17148839.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|423163057|ref|ZP_17149880.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|423732922|ref|ZP_17706165.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|423741886|ref|ZP_17710664.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|423910317|ref|ZP_17728305.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|423919387|ref|ZP_17729217.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|424002001|ref|ZP_17745086.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|424004242|ref|ZP_17747248.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|424022173|ref|ZP_17761856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|424028957|ref|ZP_17768508.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|424588443|ref|ZP_18027939.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|424593192|ref|ZP_18032551.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|424597121|ref|ZP_18036338.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|424603945|ref|ZP_18042996.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|424604697|ref|ZP_18043684.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|424608524|ref|ZP_18047402.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|424615297|ref|ZP_18054013.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|424619146|ref|ZP_18057751.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|424620063|ref|ZP_18058611.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|424642688|ref|ZP_18080466.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|424650804|ref|ZP_18088350.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|424654585|ref|ZP_18091903.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|440711549|ref|ZP_20892190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443505549|ref|ZP_21072438.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443509457|ref|ZP_21076152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443513286|ref|ZP_21079856.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443517121|ref|ZP_21083566.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443520773|ref|ZP_21087105.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443521684|ref|ZP_21087960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443529708|ref|ZP_21095725.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443533398|ref|ZP_21099344.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443537075|ref|ZP_21102933.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|449057861|ref|ZP_21736157.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
gi|340040093|gb|EGR01066.1| cold-shock DEAD box protein A [Vibrio cholerae HCUF01]
gi|340044574|gb|EGR05522.1| cold-shock DEAD box protein A [Vibrio cholerae HC-49A2]
gi|341627743|gb|EGS53041.1| cold-shock DEAD box protein A [Vibrio cholerae HC-70A1]
gi|341629303|gb|EGS54468.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48A1]
gi|341629533|gb|EGS54685.1| cold-shock DEAD box protein A [Vibrio cholerae HC-40A1]
gi|341632554|gb|EGS57419.1| cold-shock DEAD box protein A [Vibrio cholerae HFU-02]
gi|341643170|gb|EGS67467.1| cold-shock DEAD box protein A [Vibrio cholerae HC-38A1]
gi|356417845|gb|EHH71456.1| cold-shock DEAD box protein A [Vibrio cholerae HC-19A1]
gi|356424073|gb|EHH77493.1| cold-shock DEAD box protein A [Vibrio cholerae HC-06A1]
gi|356424755|gb|EHH78152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-21A1]
gi|356431226|gb|EHH84431.1| cold-shock DEAD box protein A [Vibrio cholerae HC-23A1]
gi|356435650|gb|EHH88800.1| cold-shock DEAD box protein A [Vibrio cholerae HC-32A1]
gi|356436734|gb|EHH89844.1| cold-shock DEAD box protein A [Vibrio cholerae HC-22A1]
gi|356439786|gb|EHH92749.1| cold-shock DEAD box protein A [Vibrio cholerae HC-28A1]
gi|356440797|gb|EHH93729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-33A2]
gi|356446378|gb|EHH99178.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43A1]
gi|356455033|gb|EHI07680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-61A1]
gi|356457236|gb|EHI09803.1| cold-shock DEAD box protein A [Vibrio cholerae HC-48B2]
gi|356648858|gb|AET28912.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796804|gb|AFC60274.1| cold-shock DEAD-box protein A [Vibrio cholerae IEC224]
gi|395919999|gb|EJH30822.1| cold-shock DEAD box protein A [Vibrio cholerae CP1032(5)]
gi|395922236|gb|EJH33055.1| cold-shock DEAD box protein A [Vibrio cholerae CP1041(14)]
gi|395925068|gb|EJH35870.1| cold-shock DEAD box protein A [Vibrio cholerae CP1038(11)]
gi|395931083|gb|EJH41829.1| cold-shock DEAD box protein A [Vibrio cholerae CP1046(19)]
gi|395934118|gb|EJH44857.1| cold-shock DEAD box protein A [Vibrio cholerae CP1042(15)]
gi|395935605|gb|EJH46340.1| cold-shock DEAD box protein A [Vibrio cholerae CP1048(21)]
gi|395941290|gb|EJH51968.1| cold-shock DEAD box protein A [Vibrio cholerae HC-20A2]
gi|395948039|gb|EJH58694.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46A1]
gi|395955100|gb|EJH65704.1| cold-shock DEAD box protein A [Vibrio cholerae HC-42A1]
gi|395966596|gb|EJH76713.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A2]
gi|395967297|gb|EJH77393.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A2]
gi|395968492|gb|EJH78444.1| cold-shock DEAD box protein A [Vibrio cholerae CP1030(3)]
gi|395969359|gb|EJH79241.1| cold-shock DEAD box protein A [Vibrio cholerae CP1047(20)]
gi|395978783|gb|EJH88152.1| cold-shock DEAD box protein A [Vibrio cholerae HC-47A1]
gi|408006419|gb|EKG44567.1| cold-shock DEAD box protein A [Vibrio cholerae HC-41A1]
gi|408012419|gb|EKG50198.1| cold-shock DEAD box protein A [Vibrio cholerae HC-39A1]
gi|408039736|gb|EKG76005.1| cold-shock DEAD box protein A [Vibrio cholerae CP1040(13)]
gi|408046854|gb|EKG82518.1| cold-shock DEAD box protein A [Vibrio Cholerae CP1044(17)]
gi|408048545|gb|EKG83951.1| cold-shock DEAD box protein A [Vibrio cholerae CP1050(23)]
gi|408059272|gb|EKG94040.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A2]
gi|408609028|gb|EKK82411.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|408616441|gb|EKK89595.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|408646650|gb|EKL18233.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|408649426|gb|EKL20739.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|408661260|gb|EKL32245.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|408847857|gb|EKL87915.1| cold-shock DEAD box protein A [Vibrio cholerae HC-17A2]
gi|408850986|gb|EKL90926.1| cold-shock DEAD box protein A [Vibrio cholerae HC-37A1]
gi|408872348|gb|EKM11568.1| cold-shock DEAD box protein A [Vibrio cholerae HC-69A1]
gi|408876938|gb|EKM16042.1| cold-shock DEAD box protein A [Vibrio cholerae HC-62B1]
gi|439973036|gb|ELP49279.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 4260B]
gi|443429993|gb|ELS72614.1| cold-shock DEAD box protein A [Vibrio cholerae HC-64A1]
gi|443433860|gb|ELS80072.1| cold-shock DEAD box protein A [Vibrio cholerae HC-65A1]
gi|443437457|gb|ELS87240.1| cold-shock DEAD box protein A [Vibrio cholerae HC-67A1]
gi|443441280|gb|ELS94648.1| cold-shock DEAD box protein A [Vibrio cholerae HC-68A1]
gi|443445532|gb|ELT02252.1| cold-shock DEAD box protein A [Vibrio cholerae HC-71A1]
gi|443452146|gb|ELT12374.1| cold-shock DEAD box protein A [Vibrio cholerae HC-72A2]
gi|443459278|gb|ELT26672.1| cold-shock DEAD box protein A [Vibrio cholerae HC-7A1]
gi|443463363|gb|ELT34368.1| cold-shock DEAD box protein A [Vibrio cholerae HC-80A1]
gi|443467084|gb|ELT41740.1| cold-shock DEAD box protein A [Vibrio cholerae HC-81A1]
gi|448262884|gb|EMB00131.1| Cold-shock DEAD-box protein A [Vibrio cholerae O1 str. Inaba G4222]
Length = 643
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
Length = 523
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPKHVKI 204
>gi|407068769|ref|ZP_11099607.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 662
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 135/213 (63%), Gaps = 9/213 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L ++ +I++AL G PIQ A + ++GRD +G+A+TGTGKT AF +P+L
Sbjct: 6 IQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLL 65
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISHQM 215
+KI N+ P +++APTRELA QV E L + +YGG I QM
Sbjct: 66 NKI-NLNQ-----HKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
RAL G VVGTPGRV DL+ R+ L+L E VLDEAD+ML +GF +DV ILE+ P+
Sbjct: 120 RALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPE 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
Q ++FSATMPP ++++ ++YL+NP VD+ G
Sbjct: 180 TAQRVLFSATMPPMVKTIVDRYLRNPARVDVAG 212
>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 558
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L ++ +IV ALA GI+ F IQ+ L A+ G+D+IG+ARTG GKTLA+G+P+LD+
Sbjct: 94 FEELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDR 153
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE----------FHESAPSLDTICVYGGTP 210
I P LV+APTRELA QV + F+E SL + GG P
Sbjct: 154 IFDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHP 213
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ L G D +VGTPGR++DL K LNLS V +VLDEAD+ML +GF D+E IL
Sbjct: 214 FEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKIL 273
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+++P+ RQ+++FSATMP I +L ++ P+ + G
Sbjct: 274 QQVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEG 311
>gi|365540016|ref|ZP_09365191.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 674
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 141/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L +++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNESILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E + L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E VLDEAD+ML +GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P Q ++FSATMPP ++++ ++YL++P VD+ G S+Q +A
Sbjct: 176 QAPGTAQRVLFSATMPPMVKTIVDRYLRDPARVDVAG-SNQTVA 218
>gi|337281654|ref|YP_004621125.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|419799506|ref|ZP_14324847.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
gi|335369247|gb|AEH55197.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|385697930|gb|EIG28331.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
Length = 523
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 157/249 (63%), Gaps = 17/249 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDVDNTVI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM 327
RQ+++FSATMP I+ + +++K P LT DLV ++ +G ++ M
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234
Query: 328 NMQKVENAL 336
++++ E A+
Sbjct: 235 DVEQPELAI 243
>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 520
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|389806352|ref|ZP_10203483.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
gi|388445572|gb|EIM01636.1| DNA/RNA helicase [Rhodanobacter thiooxydans LCS2]
Length = 643
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 132/206 (64%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D++ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I
Sbjct: 18 LALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI-- 75
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
K G+ P LVLAPTRELA QV + F A P + +YGG Q+ +L
Sbjct: 76 -ERKAGK---PQALVLAPTRELAIQVAEAFQTYAAHLPGFQVLPIYGGQSYGPQLHSLKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++++VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPQRQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR + ++LK+P+ V +
Sbjct: 192 LFSATMPTQIRKIAQRHLKDPVEVTI 217
>gi|374300342|ref|YP_005051981.1| DEAD/DEAH box helicase [Desulfovibrio africanus str. Walvis Bay]
gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 532
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 131/208 (62%), Gaps = 9/208 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S++++ A+ G + PIQ + M GRD++G+A+TGTGKT AFGIP
Sbjct: 2 ENLRFESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
IL+ + R + LVL PTRELA QV +E + A +L + VYGG PI
Sbjct: 62 ILEAV------DPRSHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q +AL GV V+GTPGRV+D ++R L L +V+ VVLDEAD+ML +GF ED+E IL+ +
Sbjct: 116 QFKALRQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNP 301
P+ RQ++ FSATM P I L KYL P
Sbjct: 176 PEERQTIFFSATMRPEIMRLAEKYLDKP 203
>gi|381172244|ref|ZP_09881376.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380687289|emb|CCG37863.1| DEAD/DEAH box helicase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 612
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/201 (47%), Positives = 128/201 (63%), Gaps = 9/201 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L N+
Sbjct: 3 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNA-DLNQV----- 56
Query: 173 NPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + F E+ P + VYGG P + Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTVDLVGDS 310
IR + YLK+P V + +
Sbjct: 177 IRRIAQTYLKDPAEVTIAAKT 197
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 148/249 (59%), Gaps = 20/249 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 17 GEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKI 76
Query: 162 -IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 77 NPKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E IL+++P + R
Sbjct: 130 RFGSQVVVGTPGRILDHLNRGTLKLQYVKIVVLDEADEMLDMGFVDDIETILKQVPKEER 189
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMN 328
Q M+FSATMPP I+ L Y+ P LTV L+ + D I + ++ ++
Sbjct: 190 QVMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCRIID 249
Query: 329 MQKVENALF 337
M+ + A+
Sbjct: 250 MEDIGQAII 258
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 147/254 (57%), Gaps = 26/254 (10%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +S++I A++ G ++ PIQ + ++G D+IG+A+TGTGKT AFGIPI+
Sbjct: 44 LKFEDIKLSEEIQKAVSDMGFEEMSPIQSQAIPKLLEGIDIIGQAQTGTGKTAAFGIPII 103
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQM 215
+K +G+ R+ +VL PTREL+ QV +E A I V YGG PI Q+
Sbjct: 104 EKC------NGKDRSLQAMVLCPTRELSIQVAEEIRRLAKYKRDIFVLPIYGGQPIDRQI 157
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV VVGTPGR+ID I+R L L ++ +VLDEAD+M +GF +D+E+I+ +P+
Sbjct: 158 KALKKGVQIVVGTPGRIIDHIRRKTLKLGSIRMLVLDEADEMFDMGFRDDIELIVNHMPE 217
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335
RQ++ FSATMP I +Y NP T+ +V + + +VE
Sbjct: 218 ERQTIFFSATMPKEIVDFAKRYQTNPKTIKVV----------------HKELTVPRVEQY 261
Query: 336 LFSLKQNVMQTAWL 349
F LK++ M+T L
Sbjct: 262 YFELKEH-MKTEIL 274
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 148/249 (59%), Gaps = 20/249 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +S+ ++ AL+ G + PIQKA + AM G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 17 GEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKI 76
Query: 162 -IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 77 NPKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF +D+E IL+++P + R
Sbjct: 130 RFGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEER 189
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMN 328
Q M+FSATMPP I+ L Y+ P LTV L+ + D I + ++ ++
Sbjct: 190 QVMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCRIID 249
Query: 329 MQKVENALF 337
M+ + A+
Sbjct: 250 MEDIGQAII 258
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 134/211 (63%), Gaps = 9/211 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ ++L + ++I A+A G + PIQ + ++G D+IG+A+TGTGKT AF IP+L+
Sbjct: 5 NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMR 216
KI +++ +VL PTRELA QV +E + A L T+ +YGG PI Q++
Sbjct: 65 KIDPSDKRLQ------AIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV ++GTPGRVID I R L S V+ VV+DEAD+ML +GF ED+E IL PQ
Sbjct: 119 ALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
RQ+ +FSATMP I LT KY K P+ + +V
Sbjct: 179 RQTSLFSATMPKAILELTQKYQKEPVHIKVV 209
>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
LMD-9]
Length = 527
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEK 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|410722381|ref|ZP_11361682.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
gi|410597125|gb|EKQ51762.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
Length = 527
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 133/207 (64%), Gaps = 8/207 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L +S+++ A+A G + PIQ L P + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ESLLFEDLKLSREMKRAIADMGFEEATPIQSLALPPILDGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L+K+ + ++L PTRELA QV +E + + T + VYGG PI Q
Sbjct: 62 VLEKL------DPTVKGVQAVILCPTRELAIQVAEEIKKLSKYKKTAVLPVYGGQPIERQ 115
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL GV ++GTPGRV+D I R L + +V+ ++LDEAD+ML +GF +D+E +LE++P
Sbjct: 116 IKALKRGVQIIIGTPGRVMDHIHRRTLRMDQVKMIILDEADEMLDMGFRDDIEFVLEQIP 175
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNP 301
+ RQ ++FSATM P I +T KY NP
Sbjct: 176 RERQMLLFSATMSPQILGITRKYQNNP 202
>gi|417846630|ref|ZP_12492623.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
gi|339458263|gb|EGP70806.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
Length = 524
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|427739247|ref|YP_007058791.1| DNA/RNA helicase [Rivularia sp. PCC 7116]
gi|427374288|gb|AFY58244.1| DNA/RNA helicase, superfamily II [Rivularia sp. PCC 7116]
Length = 505
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 129/208 (62%), Gaps = 8/208 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L L IS +A L + G + IQ+ + + GRD++G+++TGTGKT AF +PIL
Sbjct: 3 LTFEDLGISAQRLAQLEKLGFTTPTNIQQQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
++I + +VLAPTRELA QV E A L + +YGG I QM
Sbjct: 63 ERIDPTQ------KVVQAVVLAPTRELAIQVHSAVSEFVGAQRLKVLAIYGGQSIDRQMM 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GV VVGTPGRVIDL+ R L L V++ VLDEAD+MLS+GF +DVE IL R P+
Sbjct: 117 QLKRGVHVVVGTPGRVIDLLDRGCLKLDHVKWFVLDEADEMLSMGFIDDVEKILSRAPKE 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+ +FSATMPP IR L NK+L +P+TV
Sbjct: 177 RQTALFSATMPPSIRQLVNKFLNDPVTV 204
>gi|399520276|ref|ZP_10761052.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111717|emb|CCH37611.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 560
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 135/212 (63%), Gaps = 9/212 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G+DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGQDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L+ + VYGG P+ Q++A+
Sbjct: 69 DPTK------REPQALILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
S++FSAT+P IR++ K+L+ P V + +
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREPQHVKIAAKT 214
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 135/204 (66%), Gaps = 9/204 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ +I+AA+A G S PIQKA + M GRD++G+A+TGTGKT AF +P+L ++
Sbjct: 92 LGAEILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARL---- 147
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
+ R P LVL PTRELA QV + F+ A P + + +YGG Q+ L GV
Sbjct: 148 --DPQQRTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGV 205
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DVE +LE+LPQ RQ ++F
Sbjct: 206 QIVVGTPGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVVLF 265
Query: 283 SATMPPWIRSLTNKYLKNPLTVDL 306
SATMP IR L+ KYL+NP V +
Sbjct: 266 SATMPSEIRRLSRKYLQNPAEVTI 289
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 134/214 (62%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + ++LDI +I+ A+A G + PIQ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
IL K+ + + P +VL PTRELA QV E + A S+ + +YGG IS
Sbjct: 62 ILQKV------DPKLKKPQAIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L GV ++GTPGR++D ++R + + VVLDEAD+ML +GF ED+E IL +
Sbjct: 116 QIRSLKAGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P+ RQ+M+FSATMP I L Y +NP + ++
Sbjct: 176 PEERQTMLFSATMPKPIMELARAYQQNPEIIKVI 209
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 138/207 (66%), Gaps = 8/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L ISQD++ ++++ G + PIQ + A++G D+IG+A+TGTGKT AFGIP+++ +
Sbjct: 5 NELGISQDLMKSISKMGFEEATPIQSQTIPLALEGHDVIGQAQTGTGKTAAFGIPLIENV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALD 219
+E N +V+APTRELA QV +E H+ + + +YGG IS Q+R+L
Sbjct: 65 DVKDE------NIQGIVIAPTRELAIQVSEELHKIGHFNRVRILPIYGGQDISRQIRSLK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGRVID I R L L V+ VVLDEAD+ML++GF ED+E IL+ +P RQ+
Sbjct: 119 KHPHIIVGTPGRVIDHINRKTLKLQNVKTVVLDEADEMLNMGFIEDIEAILKGVPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP I+ + +++KNP V +
Sbjct: 179 LLFSATMPGPIQRIAERFMKNPKVVKV 205
>gi|33861657|ref|NP_893218.1| ATP-dependent RNA helicase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 592
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 144/234 (61%), Gaps = 10/234 (4%)
Query: 74 SIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA 133
SI + +D +++ + D G + ++ I+ +L +G PIQKA +
Sbjct: 27 SIQSEQKLEVTEDEISFKEEDLDNGF--ACFGFNKLILNSLESKGYKTPTPIQKAAIPEL 84
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE--- 190
M GRD++G+A+TGTGKT AF +P+++K+ ++ + N LV+ PTRELA QV
Sbjct: 85 MLGRDLLGQAQTGTGKTAAFALPLIEKL-----ENNKESNAKVLVMTPTRELATQVADSF 139
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
K + + +L T+ +YGGT +Q+ +L D VVGTPGR++D I++ ++ + +V
Sbjct: 140 KSYSAESTNLRTLAIYGGTDFRNQISSLKRKTDIVVGTPGRIMDHIRQGTFKINNISCLV 199
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
LDEAD+ML +GF ED+E I+++LP+N+Q ++FSATMP IR++ KYL P +
Sbjct: 200 LDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSATMPNEIRNIAKKYLNEPAEI 253
>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
gi|110801126|ref|YP_696091.1| DEAD/DEAH box helicase [Clostridium perfringens ATCC 13124]
gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
gi|422874320|ref|ZP_16920805.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens F262]
gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens ATCC 13124]
gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
perfringens SM101]
gi|380304797|gb|EIA17083.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens F262]
Length = 528
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 135/201 (67%), Gaps = 12/201 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ G + IQ + A++G D+IG+A+TGTGKT AFG I++
Sbjct: 9 LGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINNA-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEF-----HESAPSLDTICVYGGTPISHQMRAL 218
+ G+ ++P L+LAPTRELA QV +E HE L + +YGG PI Q+RAL
Sbjct: 67 --DFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK---LSVLPIYGGQPIDRQIRAL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+DLI+R +L L+++ F+VLDEAD+ML++GF +D+E I++ L +RQ
Sbjct: 122 KNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLK 299
+++FSATMPP I+ L Y+K
Sbjct: 182 TLLFSATMPPQIKKLARNYMK 202
>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 614
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ + G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 15 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 74
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
+ + K P LVLAPTRELA QV + F A S+ + VYGG Q+
Sbjct: 75 TRTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQL 128
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV +VGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF EDVE +L +LP
Sbjct: 129 AALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPA 188
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + YL++P+ V
Sbjct: 189 SRQVALFSATMPPQIRRIAQTYLQDPIEV 217
>gi|406836638|ref|ZP_11096232.1| DEAD/DEAH box helicase [Schlesneria paludicola DSM 18645]
Length = 412
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 134/205 (65%), Gaps = 8/205 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +SQD++ ++ R G + PIQ A + A+ GRD IG+ARTGTGKT AF +PILD +I
Sbjct: 11 LGLSQDLLVSIKRAGFTLPSPIQSAFVPVALTGRDCIGQARTGTGKTAAFVLPILD-LID 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYG 221
++ + LVL PTREL++QV E A ++ T C+ GG PI QM+ L+ G
Sbjct: 70 LDDPRTQA-----LVLTPTRELSQQVSNEVERLAFKSAVTTACLVGGRPIRQQMKQLEEG 124
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V+GTPGRVIDL+ R L + +++ VVLDEAD+ML +GF D+E IL + P+ RQ+++
Sbjct: 125 AQVVIGTPGRVIDLMGRRLLKMPDLKIVVLDEADRMLDIGFRPDIEKILRQCPEERQTLL 184
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
SAT+P + L +Y+K+P +D+
Sbjct: 185 LSATLPSPVERLARRYMKDPQRIDV 209
>gi|407698821|ref|YP_006823608.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247968|gb|AFT77153.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 608
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP I+ +T +YLK+P V +
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKI 211
>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
Length = 521
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +KL++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Ann-1]
Length = 609
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ + G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
+ + K P LVLAPTRELA QV + F A S+ + VYGG Q+
Sbjct: 69 TRTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV +VGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF EDVE +L +LP
Sbjct: 123 AALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + YL++P+ V
Sbjct: 183 SRQVALFSATMPPQIRRIAQTYLQDPIEV 211
>gi|422346062|ref|ZP_16426976.1| hypothetical protein HMPREF9476_01049 [Clostridium perfringens
WAL-14572]
gi|373226684|gb|EHP49006.1| hypothetical protein HMPREF9476_01049 [Clostridium perfringens
WAL-14572]
Length = 524
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 135/201 (67%), Gaps = 12/201 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ G + IQ + A++G D+IG+A+TGTGKT AFG I++
Sbjct: 9 LGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINNA-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEF-----HESAPSLDTICVYGGTPISHQMRAL 218
+ G+ ++P L+LAPTRELA QV +E HE L + +YGG PI Q+RAL
Sbjct: 67 --DFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK---LSVLPIYGGQPIDRQIRAL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+DLI+R +L L+++ F+VLDEAD+ML++GF +D+E I++ L +RQ
Sbjct: 122 KNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLK 299
+++FSATMPP I+ L Y+K
Sbjct: 182 TLLFSATMPPQIKKLARNYMK 202
>gi|417923705|ref|ZP_12567162.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
gi|342836587|gb|EGU70798.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
Length = 525
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|419766821|ref|ZP_14292997.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383353731|gb|EID31335.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 524
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S L +S++I+ A+ G ++ PIQ + +QG D+IG+A+TGTGKT AFGIPI+D I
Sbjct: 8 SDLGVSEEILRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFGIPIIDSI 67
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRAL 218
++K P L+L PTRELA QVE E + + + C+YGG I Q+R+L
Sbjct: 68 DPNSKK------PQALILCPTRELAVQVEGEIVKLTKYNRKISSTCIYGGESIDRQIRSL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GV VVGTPGR++D + R L+LS+V +VLDEAD+ML +GF +D+E IL +P RQ
Sbjct: 122 KKGVQIVVGTPGRIMDHMDRRTLDLSQVGIIVLDEADEMLDMGFRDDIEKILSSMPIERQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
++ FSATMP I LT KY +P
Sbjct: 182 TVFFSATMPKPILELTRKYQTDP 204
>gi|419778066|ref|ZP_14303968.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383187819|gb|EIC80263.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 525
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|350569165|ref|ZP_08937561.1| ATP-dependent RNA helicase DeaD [Propionibacterium avidum ATCC
25577]
gi|348659983|gb|EGY76693.1| ATP-dependent RNA helicase DeaD [Propionibacterium avidum ATCC
25577]
Length = 541
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 134/215 (62%), Gaps = 8/215 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + ++QG D+IG+ARTGTGKTLAFGI +L +
Sbjct: 27 FADLGVREDICQALEGVGIVSPFPIQAMSIPISIQGTDLIGQARTGTGKTLAFGITVLQR 86
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
II + E +GR P LV+ PTRELA QV K+ +A + VYGG
Sbjct: 87 IILPGDDDWEEFEHKGR-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYEP 145
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 146 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 205
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P +RQ+M+FSATMP I +L L P+ V G
Sbjct: 206 PTSRQTMLFSATMPAPIMALARSQLNRPVHVRAEG 240
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEESTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|343500286|ref|ZP_08738182.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|418480787|ref|ZP_13049842.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820665|gb|EGU55483.1| ATP-dependent RNA helicase DeaD [Vibrio tubiashii ATCC 19109]
gi|384571547|gb|EIF02078.1| cold-shock DEAD-box protein A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 648
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEVKNLGQNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++S+ ++L++P TVD+ G
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETVDVAG 212
>gi|417793177|ref|ZP_12440462.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
gi|334274175|gb|EGL92503.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
Length = 520
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|410860280|ref|YP_006975514.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
gi|410817542|gb|AFV84159.1| ATP-dependent RNA helicase [Alteromonas macleodii AltDE1]
Length = 586
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++++VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP I+ +T +YLK+P V +
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKI 211
>gi|419782961|ref|ZP_14308757.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182695|gb|EIC75245.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 520
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
4047]
gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
4047]
Length = 538
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 139/211 (65%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + ++S+DI +A+ G K PIQ+ + A++GRD+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQM 215
+KI + N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIRTAD-------NTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ L++GF ED+E I+ R+P
Sbjct: 114 KALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPD 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 174 DRQTLLFSATMPAPIKEIGVKFMKDPEHVQV 204
>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 525
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084282|ref|YP_006000564.1| DEAD/DEAH box helicase domain-containing protein [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 609
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ + G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
+ + K P LVLAPTRELA QV + F A S+ + VYGG Q+
Sbjct: 69 TRTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV +VGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF EDVE +L +LP
Sbjct: 123 AALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + YL++P+ V
Sbjct: 183 SRQVALFSATMPPQIRRIAQTYLQDPIEV 211
>gi|406588887|ref|ZP_11063373.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419814746|ref|ZP_14339501.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419817514|ref|ZP_14341672.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404465849|gb|EKA11235.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466056|gb|EKA11416.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|404471161|gb|EKA15716.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
Length = 525
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
Length = 520
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 593
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 134/203 (66%), Gaps = 8/203 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
+ +IV ALA GI FPIQ L AM G D+IG+A+TGTGKTL FG+P+L +++
Sbjct: 21 VRPEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVVAPG 80
Query: 164 ---FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
++E G+ P LV+ PTRELA QV K+ ++ S+ + +YGG Q++AL
Sbjct: 81 EPGYDELPAPGK-PQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQVKAL 139
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
+ GV+ VVGTPGR+IDL+K+ L+L+ Q VVLDEAD+ML +GF DVE +L R P R
Sbjct: 140 EQGVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPAVRH 199
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
+M+FSATMP + ++ +Y+K P
Sbjct: 200 TMLFSATMPGAVVAMARRYMKQP 222
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 134/210 (63%), Gaps = 3/210 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + ++AAL G K PIQ+ + ++G D++G A+TGTGKT AF +P
Sbjct: 65 GVRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPA 124
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P Q
Sbjct: 125 LSRMAELADVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 184
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE ILE P
Sbjct: 185 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 244
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++Q +FSATMP IR + +YL +P +
Sbjct: 245 DSKQVALFSATMPNSIRKIAQQYLNDPTEI 274
>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Dixon]
gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Dixon]
gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Xylella fastidiosa Ann-1]
gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
Length = 609
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ + G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
+ + K P LVLAPTRELA QV + F A S+ + VYGG Q+
Sbjct: 69 TRTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV +VGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF EDVE +L +LP
Sbjct: 123 AALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + YL++P+ V
Sbjct: 183 SRQVALFSATMPPQIRRIAQTYLQDPIEV 211
>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
Length = 524
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 134/211 (63%), Gaps = 9/211 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ ++L + ++I A+A G + PIQ + ++G D+IG+A+TGTGKT AF IP+L+
Sbjct: 5 NFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLE 64
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMR 216
KI +++ +VL PTRELA QV +E + A L T+ +YGG PI Q++
Sbjct: 65 KIDPSDKRL------QAIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQIK 118
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV ++GTPGRVID I R L S V+ VV+DEAD+ML +GF ED+E IL PQ
Sbjct: 119 ALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQE 178
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
RQ+ +FSATMP I LT KY K P+ + +V
Sbjct: 179 RQTSLFSATMPKAILELTQKYQKEPVHIKVV 209
>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 524
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|417559517|ref|ZP_12210424.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|338177845|gb|EGO80883.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 609
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ + G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 9 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 68
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
+ + K P LVLAPTRELA QV + F A S+ + VYGG Q+
Sbjct: 69 TRTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQL 122
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV +VGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF EDVE +L +LP
Sbjct: 123 AALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPA 182
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + YL++P+ V
Sbjct: 183 SRQVALFSATMPPQIRRIAQTYLQDPIEV 211
>gi|441517957|ref|ZP_20999687.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441455272|dbj|GAC57648.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 582
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/202 (47%), Positives = 125/202 (61%), Gaps = 9/202 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I + ++AAL G PIQ A + P M GRD++G A+TGTGKT AF +PIL ++
Sbjct: 19 IDERVLAALDEVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAVPILSRL---- 74
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
R P LVLAPTRELA QV + F + P + + +YGG Q+ L G
Sbjct: 75 --DASARKPQALVLAPTRELALQVAEAFGRYSSRMPEVKVLPIYGGQSYGIQLSGLRRGA 132
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+VGTPGR+ID + + L+LSE+ F+VLDEAD+MLS+GFAED+E IL P ++Q +F
Sbjct: 133 QVIVGTPGRIIDHLDKGTLDLSELAFLVLDEADEMLSMGFAEDIERILADTPDSKQVALF 192
Query: 283 SATMPPWIRSLTNKYLKNPLTV 304
SATMPP I L KYL +P V
Sbjct: 193 SATMPPTIGRLARKYLDDPQEV 214
>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
Length = 615
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L +S ++ A+ + G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 15 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 74
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
+ + K P LVLAPTRELA QV + F A S+ + VYGG Q+
Sbjct: 75 TRTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQL 128
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV +VGTPGRVID ++R L+LSE++ +VLDEAD+ML +GF EDVE +L +LP
Sbjct: 129 AALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPA 188
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ +FSATMPP IR + YL++P+ V
Sbjct: 189 SRQVALFSATMPPQIRRIAQTYLQDPIEV 217
>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 589
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 133/206 (64%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGR+ID IKR L+LSE++++VLDEAD+ML +GF +DVE+IL P+ RQ+
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP I+ +T +YLK+P V +
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKI 211
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 135/202 (66%), Gaps = 9/202 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKN 300
+++FSATMP W++ ++ KYL++
Sbjct: 252 TLLFSATMPAWVKEISEKYLRD 273
>gi|418975118|ref|ZP_13523027.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348489|gb|EID26448.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 515
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 134/210 (63%), Gaps = 3/210 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G+ + L + ++AAL G K PIQ+ + + G D++G A+TGTGKT AF +P
Sbjct: 79 GVRFTDLGLDPRVLAALEEVGYEKPSPIQEQTIPLLLDGHDVVGLAQTGTGKTAAFALPA 138
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + + +G R+ LVLAPTRELA QV + F A ++ V YGG+P Q
Sbjct: 139 LSRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 198
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS +Q++VLDEAD+ML +GFAEDVE ILE P
Sbjct: 199 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 258
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++Q +FSATMP IR + +YL +P+ V
Sbjct: 259 DSKQVALFSATMPNSIRKIAQQYLNDPVEV 288
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 135/202 (66%), Gaps = 9/202 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKN 300
+++FSATMP W++ ++ KYL++
Sbjct: 252 TLLFSATMPAWVKEISEKYLRD 273
>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001218|ref|YP_007270961.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter
acetatoxydans Re1]
gi|432178012|emb|CCP24985.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
Length = 529
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 136/212 (64%), Gaps = 9/212 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S++++ A+ G + PIQ + +GRD+IG+A+TGTGKT AFG+PIL
Sbjct: 4 MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQM 215
D +I ++K N ++L PTRELA QV +E + + + VYGG PI Q+
Sbjct: 64 D-MIDTDDK-----NQQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL GV ++GTPGRV+D ++R+ L L + VVLDEAD+ML +GF ED+E ILE P+
Sbjct: 118 HALKRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPK 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
RQ++MFSAT+P I L +YL NP + +V
Sbjct: 178 ARQTLMFSATIPKPILELAERYLNNPQLIKVV 209
>gi|352081054|ref|ZP_08951932.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351683095|gb|EHA66179.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 619
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 129/206 (62%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + D+ LA G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I +
Sbjct: 18 LALHPDVQRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRIER 77
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A P + +YGG Q+ +L
Sbjct: 78 ------RPGKPQALVLAPTRELAIQVAEAFQTYAAHVPGFQVLPIYGGQSYGPQLHSLKR 131
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID + + L+LSE++F+VLDEAD+ML +GF +DVE +L+ P RQ
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQVA 191
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR + ++LK P+ V +
Sbjct: 192 LFSATMPAPIRKIAQRHLKEPVEVTI 217
>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
Length = 525
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
vestibularis F0396]
gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
vestibularis F0396]
Length = 529
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 NKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
Length = 528
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
[Aliivibrio salmonicida LFI1238]
Length = 641
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 136/215 (63%), Gaps = 9/215 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L + + +++AL G PIQ + + GRD +G+A+TGTGKT AF +P+L+
Sbjct: 7 EFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLN 66
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMR 216
KI N K NP +++APTRELA QV K + L + +YGG I QMR
Sbjct: 67 KI---NLKQ---HNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR 120
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DL+ R+ LNL EV +LDEAD+ML +GF +DV ILE+ P+
Sbjct: 121 ALSRGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPET 180
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
Q ++FSATMPP ++++ ++YL++P VD+ G ++
Sbjct: 181 AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTNN 215
>gi|359768236|ref|ZP_09272012.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|378717409|ref|YP_005282298.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|359314324|dbj|GAB24845.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|375752112|gb|AFA72932.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 587
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 129/213 (60%), Gaps = 9/213 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
D + + LDI + +A+A G PIQ A + P M GRD++G A+TGTGKT
Sbjct: 8 DRPDADAITFDDLDIDDRVRSAIAEVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTA 67
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGG 208
AF IPIL +I R P L+LAPTRELA QV + F + P + + +YGG
Sbjct: 68 AFAIPILSRIDPAV------RRPQALILAPTRELALQVSEAFSRYSAHMPEVRVLPIYGG 121
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID + + L++SE++++VLDEAD+ML++GFAEDVE
Sbjct: 122 QSYGVQLAGLRRGAQVIVGTPGRVIDHLDKGTLDISELEYLVLDEADEMLTMGFAEDVER 181
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
IL P ++Q +FSATMP IR L KYL +P
Sbjct: 182 ILAETPDSKQVALFSATMPSAIRRLAQKYLHDP 214
>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 614
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 126/195 (64%), Gaps = 9/195 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L N+
Sbjct: 3 AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNA-DLNQV----- 56
Query: 173 NPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + F E+ P + VYGG P + Q+ AL GV VVGTP
Sbjct: 57 KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ RQ +FSATMPP
Sbjct: 117 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPA 176
Query: 290 IRSLTNKYLKNPLTV 304
IR + YLK+P V
Sbjct: 177 IRRIAQTYLKDPAEV 191
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 134/200 (67%), Gaps = 8/200 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L + ++I+ A+ G + IQ V+ ++G D+IG+A+TGTGKTLAFG P+L +I
Sbjct: 7 SELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSRI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
+ G+ ++L PTRELA QV E + A + + VYGG PI Q+ AL
Sbjct: 67 -----RSSEGKIS-SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALR 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G+D VVGTPGRV+DLI+R LNL ++F+VLDEAD+ML++GF +D+E I++ Q+RQ+
Sbjct: 121 RGIDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQT 180
Query: 280 MMFSATMPPWIRSLTNKYLK 299
M+FSATMP I+ L +Y+K
Sbjct: 181 MLFSATMPEEIKRLAKRYMK 200
>gi|385832194|ref|YP_005869969.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
gi|343181347|dbj|BAK59685.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
Length = 534
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 10/230 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ IV L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
RQ+++FSATMP I+ + K++KNP + + + + AD I Y I T
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKVA--AKEMTADRIDQYFIKTK 222
>gi|401682240|ref|ZP_10814134.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
gi|400184676|gb|EJO18914.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
Length = 523
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 141/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G ++ PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEVSPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|345876610|ref|ZP_08828376.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226322|gb|EGV52659.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 628
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 9/220 (4%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S D + L +S+ I+ ALA G PIQ+A + P ++G+D++G+A+TGTGKT AF
Sbjct: 6 STDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAF 65
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L +I + K P LVLAPTRELA QV + A + +YGG P
Sbjct: 66 ALPLLSRI-DLSRK-----TPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQP 119
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
HQ+R L GV VVGTPGRV+D I+R L L + +VLDEAD+ML +GF +DVE IL
Sbjct: 120 YDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWIL 179
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
E+ PQ RQ +FSATMP IR + ++L +P + + +
Sbjct: 180 EQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEIKIAAKT 219
>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|417918982|ref|ZP_12562526.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|342835133|gb|EGU69390.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 524
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|430746222|ref|YP_007205351.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430017942|gb|AGA29656.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 415
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 131/205 (63%), Gaps = 10/205 (4%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ ++ A++GRD+IG+A+TGTGKT AFGIP+++ + RG+ P ++LAPTR
Sbjct: 36 PIQAELIPEALEGRDVIGQAKTGTGKTAAFGIPLIEML------EARGKGPQGIILAPTR 89
Query: 184 ELAKQVEKEFHESAPSLDT-IC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241
EL +Q+ E A D IC +YGG PI Q+RAL GVD +VGTPGRV+D I+R L
Sbjct: 90 ELVQQIVAELQTLADGQDVVICGIYGGEPIDKQLRALQRGVDLIVGTPGRVLDHIERRTL 149
Query: 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
L ++ VVLDEAD+ML +GF D+E IL ++P Q+++ SAT+ P IR L +Y+ P
Sbjct: 150 YLGDIYHVVLDEADRMLDIGFRPDIERILRKVPNPHQTLLLSATISPDIRKLAQRYMFEP 209
Query: 302 LTVDLVGDSDQKLADGISLYSIATS 326
+ ++L D+ D I Y +
Sbjct: 210 VELNL--SRDEPSVDSIKQYYVTVE 232
>gi|417938107|ref|ZP_12581405.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391197|gb|EGV03772.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 525
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|333894503|ref|YP_004468378.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
Length = 588
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 131/206 (63%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ AL + G K PIQ + ++G D++G+A+TGTGKT AF +P+L I
Sbjct: 12 LKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANI-- 69
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY 220
R P LVLAPTRELA QV + F A + + VYGG +Q+R L
Sbjct: 70 ----DPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIRQLKR 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV VVGTPGRVID IKR L+LSE++F+VLDEAD+ML +GF +DVE+IL P RQ+
Sbjct: 126 GVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQTA 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP I+ +T +YLK+P V +
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKI 211
>gi|445381685|ref|ZP_21427119.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
gi|445394588|ref|ZP_21428854.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748875|gb|ELW73823.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748978|gb|ELW73920.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
Length = 522
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|417915918|ref|ZP_12559512.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
gi|342831712|gb|EGU66023.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
Length = 525
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS+ + ++ R G + PIQ+ + M+G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K G N L++APTRELA QV +E + ++ + VYGG IS Q+RAL
Sbjct: 65 ---DTKDG---NVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR++D I R L L V ++LDEAD+ML++GF ED++ I+ +P RQ+
Sbjct: 119 NRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP IR + K++K P V +
Sbjct: 179 LLFSATMPDAIRRIAEKFMKTPEIVKI 205
>gi|385799993|ref|YP_005836397.1| DEAD/DEAH box helicase [Halanaerobium praevalens DSM 2228]
gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
2228]
Length = 529
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 130/205 (63%), Gaps = 9/205 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S +I+ A+ G + PIQ + + G+D++G+A+TGTGKT AFGIP+L
Sbjct: 4 IKFNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQM 215
+ E +NP ++L PTRELA QV +E A + T+ VYGG I Q+
Sbjct: 64 E------EMDSENKNPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV V+GTPGRV+D I+R L L + + VLDEAD ML +GF +D+E +L +P
Sbjct: 118 KALKKGVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPD 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKN 300
+RQ++ FSAT+P I+ L+ KY KN
Sbjct: 178 DRQTLFFSATIPKSIKRLSKKYQKN 202
>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
Length = 528
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 9/204 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L IS +I +A+A G + PIQ+ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISH 213
LD I N RN +VL PTRELA Q +E + L+ + +YGG PI
Sbjct: 62 ALDTIDLNN------RNLQIMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV V+GTPGRVID I R L ++ VVLDEAD+ML +GF +D+E I++ +
Sbjct: 116 QIKALKRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSV 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKY 297
P+NRQ+++FSATMP I L+ KY
Sbjct: 176 PENRQTILFSATMPKAIVELSKKY 199
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S+L+IS+ + ++ R G + PIQ+ + M+G+D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 5 SELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ K G N L++APTRELA QV +E + ++ + VYGG IS Q+RAL
Sbjct: 65 ---DTKDG---NVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR++D I R L L V ++LDEAD+ML++GF ED++ I+ +P RQ+
Sbjct: 119 NRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMP IR + K++K P V +
Sbjct: 179 LLFSATMPDAIRRIAEKFMKTPEIVKI 205
>gi|387879215|ref|YP_006309518.1| ATP-dependent RNA helicase [Streptococcus parasanguinis FW213]
gi|386792669|gb|AFJ25704.1| ATP-dependent RNA helicase [Streptococcus parasanguinis FW213]
Length = 523
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 156/249 (62%), Gaps = 17/249 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDVDNTVI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM 327
RQ+++FSATMP I+ + +++K P LT DLV ++ +G ++ M
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234
Query: 328 NMQKVENAL 336
++++ E A+
Sbjct: 235 DVEQPELAI 243
>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
Length = 523
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 156/249 (62%), Gaps = 17/249 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDVDNTVI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM 327
RQ+++FSATMP I+ + +++K P LT DLV ++ +G ++ M
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234
Query: 328 NMQKVENAL 336
++++ E A+
Sbjct: 235 DVEQPELAI 243
>gi|420143621|ref|ZP_14651118.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
gi|391856492|gb|EIT67032.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
Length = 539
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 10/230 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ IV L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
RQ+++FSATMP I+ + K++KNP + + + + AD I Y I T
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKVA--AKEMTADRIDQYFIKTK 222
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 143/225 (63%), Gaps = 10/225 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++ ++ A+ G + PIQ + A++GRD++G+A+TGTGKT AFG+P+L
Sbjct: 1 MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI E + LV+APTRELA Q +E + + T+ VYGG I Q+
Sbjct: 61 EKIDHHTE------HIQALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIH 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+ G VVGTPGR+IDL+KR LNL+ ++ +VLDEAD+ML++GF ED+E I+ P N
Sbjct: 115 QIKKGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
RQ+++FSATMP I+ + ++++P+TV + ++ + AD I Y
Sbjct: 175 RQTLLFSATMPKEIQRIGEHFMQDPVTVKI--EAKEMTADTIDQY 217
>gi|414157194|ref|ZP_11413494.1| hypothetical protein HMPREF9186_01914 [Streptococcus sp. F0442]
gi|410868510|gb|EKS16475.1| hypothetical protein HMPREF9186_01914 [Streptococcus sp. F0442]
Length = 523
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 156/249 (62%), Gaps = 17/249 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDVDNTVI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM 327
RQ+++FSATMP I+ + +++K P LT DLV ++ +G ++ M
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234
Query: 328 NMQKVENAL 336
++++ E A+
Sbjct: 235 DVEQPELAI 243
>gi|348170820|ref|ZP_08877714.1| putative ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL
18395]
Length = 495
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 7/195 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
DIV AL GI + F IQ+ L AMQG D+IG+ARTGTGKTL FG+P+L ++ ++
Sbjct: 4 DIVRALREAGIERTFAIQELTLPLAMQGEDLIGQARTGTGKTLGFGVPLLHRL----QRP 59
Query: 169 GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVV 226
G G P L++ PTREL QV ++ ++ L T+ VYGG P Q+ AL GVD V+
Sbjct: 60 GDG-TPQALIVVPTRELCLQVTRDLTDAGKHLGVRTVAVYGGRPYEEQISALRKGVDVVI 118
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL +P+ RQ+M+FSATM
Sbjct: 119 GTPGRLLDLAEQRHLVLGKVRGLVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSATM 178
Query: 287 PPWIRSLTNKYLKNP 301
P I +L ++ P
Sbjct: 179 PGPILTLARTFMTQP 193
>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
Length = 643
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++S+ ++L++P T+D+ G
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETIDVAG 212
>gi|419781258|ref|ZP_14307090.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184650|gb|EIC77164.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 525
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|386087169|ref|YP_006003043.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|386345260|ref|YP_006041424.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387910270|ref|YP_006340576.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|339278721|emb|CCC20469.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387575205|gb|AFJ83911.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
Length = 528
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 147/242 (60%), Gaps = 10/242 (4%)
Query: 95 KDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
K +G+D S L ++ L RGIS LFPIQ+ E G D+IG+ RTG+GKTL
Sbjct: 18 KVKGIDESNLKAYIKNKQTRKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTL 77
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGG 208
A+ +PIL++I K + +NP LVL PTRELA QV EF+ +YGG
Sbjct: 78 AYCLPILERIRGLGLK--QNKNPYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGG 135
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + +Q+ + G + VVGTPGR+ DL++R L L E+Q VVLDEADQML+ GF E++E
Sbjct: 136 TDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEK 195
Query: 269 ILERLPQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
I+ + + Q ++FSAT+P W++ L++KY++ N ++L+ + + + + Y++ +
Sbjct: 196 IMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCA 255
Query: 327 MN 328
N
Sbjct: 256 RN 257
>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 618
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 131/200 (65%), Gaps = 5/200 (2%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + +I AL GI FPIQ+ L A+ G+D+IG+ARTGTGKT AFGIP L I K
Sbjct: 13 LGVIPEIADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPTLQLIGK 72
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYG 221
+ + P L+LAPTRELA QV ++ +A L T VYGG Q+ AL G
Sbjct: 73 PRKNR---KKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNG 129
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VD VVGTPGR++DL+ + L+LS++ +VLDEAD+ML +GF D+E I++ LP+ RQ+M+
Sbjct: 130 VDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTML 189
Query: 282 FSATMPPWIRSLTNKYLKNP 301
FSATMP I +L+ +YL P
Sbjct: 190 FSATMPGEIVALSRRYLNRP 209
>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 133/214 (62%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 29 EAMKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 88
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L K+ + + +VL PTRELA QV +E + I V YGG I
Sbjct: 89 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVK 142
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G ++GTPGRV+D ++R + L V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 143 QIRSLKDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQL 202
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P+ RQ++MFSATMPP I + K+ K P+TV +V
Sbjct: 203 PEERQTLMFSATMPPAIAEIARKFQKEPVTVRVV 236
>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
Length = 619
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 138/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + L ++ I++AL G PIQ A + ++G D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFRDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-DLDQ-----RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G +VGTPGRV DLI R L+L EV+ VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P + Q ++FSATMPP ++S+ ++L++P+TVD+ G
Sbjct: 176 HSPDSAQRVLFSATMPPMLKSICERFLRSPVTVDVAG 212
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 147/242 (60%), Gaps = 10/242 (4%)
Query: 95 KDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
K +G+D S L ++ L RGIS LFPIQ+ E G D+IG+ RTG+GKTL
Sbjct: 18 KVKGIDESNLKAYIKNKQTRKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTL 77
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGG 208
A+ +PIL++I K + +NP LVL PTRELA QV EF+ +YGG
Sbjct: 78 AYCLPILERIRGLGLK--QNKNPYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGG 135
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + +Q+ + G + VVGTPGR+ DL++R L L E+Q VVLDEADQML+ GF E++E
Sbjct: 136 TDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEK 195
Query: 269 ILERLPQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
I+ + + Q ++FSAT+P W++ L++KY++ N ++L+ + + + + Y++ +
Sbjct: 196 IMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCA 255
Query: 327 MN 328
N
Sbjct: 256 RN 257
>gi|410866553|ref|YP_006981164.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823194|gb|AFV89809.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 610
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 138/238 (57%), Gaps = 6/238 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + DI ALA GI FPIQ + A++G D+IG+ARTGTGKTLAFG+ IL +
Sbjct: 22 FADLGVRDDICQALAGVGIISPFPIQSMCIPIAVEGNDLIGQARTGTGKTLAFGVTILQR 81
Query: 161 IIKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215
I+ + R P LV PTRELA QV ++ +A + VYGG Q+
Sbjct: 82 IVLPGDDGWDDDAPRRPQALVTCPTRELALQVSRDIATAATVRGARVLTVYGGVGYEPQI 141
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
AL+ GVD VVGTPGR++DL R L+LS + VLDEAD+ML +GF DVE +L P+
Sbjct: 142 EALENGVDVVVGTPGRLLDLAHRKDLDLSGARITVLDEADEMLDLGFLPDVEKLLALTPK 201
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
NRQSM+FSATMP I SL +L P+ + G Q + + + S M K+E
Sbjct: 202 NRQSMLFSATMPAAIMSLARAHLNKPVHIRAEGADAQATVPDTTQF-VYQSHPMDKIE 258
>gi|378551112|ref|ZP_09826328.1| hypothetical protein CCH26_13526 [Citricoccus sp. CH26A]
Length = 578
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 139/221 (62%), Gaps = 8/221 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ ++ D+V ALA +GI+ FPIQ L A+ G D+IG+A+TGTGKTL FG+P+L +
Sbjct: 46 FADFNVRADMVEALAEKGITHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGLPLLQR 105
Query: 161 IIKFNEKHGRGR-----NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
+I +E+ G R P LV+APTRELA QV + +A S+ +YGG
Sbjct: 106 VIGPDEE-GFDRLAAPGAPQALVVAPTRELANQVAADITAAASKRSVRIATIYGGRAYEP 164
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ L GV+ VVGTPGR+IDL+++ LNL V+ VVLDEAD+ML +GF DVE +L +
Sbjct: 165 QIEELQRGVEVVVGTPGRLIDLMRQRHLNLKLVKIVVLDEADEMLDLGFLPDVETLLSAV 224
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
P+ RQ+M+FSATMP + ++ +Y+ P + D+ +
Sbjct: 225 PEVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGI 265
>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
Length = 523
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 135/202 (66%), Gaps = 9/202 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S+ L +RGI+ LFPIQ + P +D++G+A+TG+GKT++F +P+++++ N
Sbjct: 74 VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVDA 224
E+ +G+NP + L+PTRELA Q+ +EF + S ICVYGG I Q+ L GVD
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINKLQSGVDV 191
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE----RLPQNR--Q 278
+VGTPGRV DL R L L ++ +VLDEAD+ML++GF E+V I++ +P+ Q
Sbjct: 192 IVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQ 251
Query: 279 SMMFSATMPPWIRSLTNKYLKN 300
+++FSATMP W++ ++ KYL++
Sbjct: 252 TLLFSATMPAWVKEISEKYLRD 273
>gi|417753019|ref|ZP_12401172.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|333770963|gb|EGL47936.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 539
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S+DI +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
+KI R + LV+APTRELA Q ++E + VYGG+ I Q
Sbjct: 61 NKI--------RTSENIIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ+++FSATMP I+ + K++K+P V +
Sbjct: 173 ADRQTLLFSATMPAPIKQIGVKFMKDPEHVQI 204
>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 536
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 139/200 (69%), Gaps = 8/200 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L++ +I+ A+ G + PIQ + ++G D+IG+A+TGTGKT AFG IL+ +
Sbjct: 8 NELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSIILNNM 67
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALD 219
+EK R P L+LAPTRELA QV +E A + L+ + +YGG PI Q+RAL
Sbjct: 68 ---SEKR---RVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALR 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VVGTPGRV+D ++R +LN V+F+VLDEAD+ML++GF +D+E +++ L ++RQ+
Sbjct: 122 NGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQT 181
Query: 280 MMFSATMPPWIRSLTNKYLK 299
++FSATMP I+ L+ +Y+K
Sbjct: 182 LLFSATMPDAIKRLSKRYMK 201
>gi|347520831|ref|YP_004778402.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
gi|343179399|dbj|BAK57738.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
Length = 539
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 10/230 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ IV L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPAE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
RQ+++FSATMP I+ + K++KNP + + + + AD I Y I T
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKVA--AKEMTADRIDQYFIKTK 222
>gi|336126222|ref|YP_004578178.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343939|gb|AEH35221.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 672
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNDSILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E + L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E VLDEAD+ML +GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P Q ++FSATMPP ++++ ++YL++P VD+ G S+Q +A
Sbjct: 176 QAPGTAQRVLFSATMPPMVKTIVDRYLRDPARVDVAG-SNQTVA 218
>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 513
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 134/208 (64%), Gaps = 8/208 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L +L ISQ+ V L + G + IQ + + GRD++G+++TGTGKT AF +PIL
Sbjct: 3 LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+++ + + +VL PTRELA QV + L T+ +YGG I QM
Sbjct: 63 ERL------DPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQML 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GV VVGTPGRVIDL++R L L +V++ VLDEAD+MLS+GF +DVE IL + PQ+
Sbjct: 117 QLKRGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQD 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+ +FSATMPP IR L NK+L++P+TV
Sbjct: 177 RQTALFSATMPPSIRMLVNKFLRSPVTV 204
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 135/224 (60%), Gaps = 10/224 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S I DIV+ALA GI+ FPIQ L A+ G D+IG+A+TGTGKTL FGIP+L+K
Sbjct: 35 FSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNK 94
Query: 161 IIKFNEKHGRG----RNPLCLVLAPTRELAKQVEKEFHES--APSLDTICVYGGTPISHQ 214
+I + G P L +APTRELA QV + + A + + VYGG Q
Sbjct: 95 VIARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQ 154
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ VVGTPGR+IDL K+ L+LS + VVLDEAD+ML +GF DVE +L
Sbjct: 155 IDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTS 214
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV----GDSDQKL 314
RQ+M+FSATMP + +L +Y+ P + + GD+ Q +
Sbjct: 215 PGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTV 258
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 133/203 (65%), Gaps = 8/203 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F+ G+ CL+L PTRELA QV E + + VYGG I Q++
Sbjct: 61 NN---FSSNDGK---VFCLILTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+ML +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMLDMGFIDDIKEIINHTNRE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLK 299
RQ+MMFSATMP I++L KY+K
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMK 197
>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 557
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 168/310 (54%), Gaps = 40/310 (12%)
Query: 75 IAWQHAQSAVDDYVAYDDSSKDEGLDIS-----KLDISQDIVAALARRGISKLFPIQKAV 129
I A + V D D + + + D+S + +I ALA +GI FPIQ
Sbjct: 31 IETAQAHAPVLDEATPDITDEGDETDLSAKTFADFGVEPEISQALADKGIIHPFPIQALT 90
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRE 184
L A+ GRD+IG+A+TGTGKTL FGIP+L + ++E G +P LV+ PTRE
Sbjct: 91 LPVALDGRDVIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALVVLPTRE 149
Query: 185 LAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN 242
LAKQV E ++A ++ + VYGG Q+ AL+ G + VVGTPGR+IDL++R L+
Sbjct: 150 LAKQVATELAQAAAKRTVRIVQVYGGRAYEPQIEALEKGAEVVVGTPGRLIDLMERGVLS 209
Query: 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
L V VVLDEAD+ML +GF DVE IL R +RQ+M+FSATMP + +L +Y+ P
Sbjct: 210 LEHVTTVVLDEADEMLDLGFLPDVEKILARTRPDRQTMLFSATMPGAVVALARRYMSKPT 269
Query: 303 TVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCM 362
+ D+ + + S+KQ V +T L KV +VS +
Sbjct: 270 HIRAQDPGDESM--------------------TVTSVKQVVYRTHALN---KVEVVSRIL 306
Query: 363 GISHKARGRG 372
+ARGRG
Sbjct: 307 ----QARGRG 312
>gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium fabrum str. C58]
gi|335036122|ref|ZP_08529452.1| cold-shock dead-box protein A [Agrobacterium sp. ATCC 31749]
gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium fabrum str. C58]
gi|333792686|gb|EGL64053.1| cold-shock dead-box protein A [Agrobacterium sp. ATCC 31749]
Length = 615
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 134/210 (63%), Gaps = 4/210 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ I AL +RG L P+Q+A+L P + +D + A+TG+GKT+AFGI + ++ N
Sbjct: 7 IAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALATTLLSEN 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGV 222
+ G+ PL L +APTRELA QV++E +E A CV GG I ++ RAL+ G
Sbjct: 67 TRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCV-GGMDIRNERRALERGA 125
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGR+ D IKRNAL+LS ++ VVLDEAD+ML +GF ED+E ILE P +R+++MF
Sbjct: 126 HIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDRRTLMF 185
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
SAT+P I L Y KN + + + Q
Sbjct: 186 SATVPRSIAKLAESYQKNAVRIATASEQKQ 215
>gi|422920974|ref|ZP_16954232.1| cold-shock DEAD box protein A [Vibrio cholerae BJG-01]
gi|341649769|gb|EGS73719.1| cold-shock DEAD box protein A [Vibrio cholerae BJG-01]
Length = 643
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQHK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 218
>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 640
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 9/210 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L +S ++ A+A G PIQ A + + GRD++G+A+TGTGKT AF +P+L
Sbjct: 11 FADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN 70
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRA 217
N+ P LVLAPTRELA QV + F E+ P + VYGG P + Q+ A
Sbjct: 71 A-DLNQL-----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSA 124
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRVID + R L+LS+++ +VLDEAD+ML +GF +DVE +L++LP+ R
Sbjct: 125 LKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKR 184
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
Q +FSATMPP I + YLK+P V +
Sbjct: 185 QVALFSATMPPAICRIAQTYLKDPAEVTIA 214
>gi|422910192|ref|ZP_16944833.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
gi|341633696|gb|EGS58485.1| cold-shock DEAD box protein A [Vibrio cholerae HE-09]
Length = 646
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 518
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 142/220 (64%), Gaps = 17/220 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ D+S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P +
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDS 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ + +++K P LT DLV
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTDLV 214
>gi|384423097|ref|YP_005632456.1| cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3984-4]
Length = 644
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 162/273 (59%), Gaps = 17/273 (6%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL 339
+FSATMP I+ + N++L+NP+ V + +S Q + I + S + K+E + L
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRI--ESSQTTVESIEQRFVQVSQH-NKLEALVRVL 239
Query: 340 KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
+ V T ++++++ + C+ ++ K RG
Sbjct: 240 E--VENTEGVIIFVRT--RNSCVELAEKLEARG 268
>gi|430002887|emb|CCF18668.1| ATP-dependent RNA helicase protein [Rhizobium sp.]
Length = 697
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 136/206 (66%), Gaps = 4/206 (1%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I ALA+RG + L P+Q+A+L+PA+Q D + A+TG+GKT+AFGI + ++ E+
Sbjct: 11 IAKALAKRGYATLTPVQQAMLDPALQTSDALVSAQTGSGKTVAFGIAMAPTLLDDGERFE 70
Query: 170 RGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
R PL LV+APTRELA QV +E +E ++ CV GG I + RAL+ G VV
Sbjct: 71 RAGAPLALVIAPTRELAMQVNRELAWLYEMTGAVIASCV-GGMDIRSERRALERGAHIVV 129
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR+ D I+RNAL++SE++ VLDEAD+ML +GF ED+E IL+ P+ R+++MFSAT+
Sbjct: 130 GTPGRICDHIRRNALDMSELRVAVLDEADEMLDLGFREDLEFILDAAPEGRRTLMFSATV 189
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P I L +Y ++ + + + Q
Sbjct: 190 PSGIAKLAKRYQRDAVRISTTAEEKQ 215
>gi|429757621|ref|ZP_19290153.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429174759|gb|EKY16228.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 564
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 151/287 (52%), Gaps = 15/287 (5%)
Query: 53 SRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVA 112
S +SAG +I P + S + Y E + +S IV
Sbjct: 25 SDYSAGVVRLGSIKAPSTQEDETTPDITNSGNETY---------EAKSFADFGVSDPIVD 75
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG- 171
AL RGI+ FPIQ L A+ D+IG+A+TGTGKTL FGIP+L+ +I +E+
Sbjct: 76 ALEERGITHPFPIQALTLPVALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGYEDL 135
Query: 172 ---RNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVV 226
P L++ PTREL KQV + +A L T + +YGG Q+ AL G D VV
Sbjct: 136 LNPNMPQALIILPTRELTKQVADDLRAAASKLSTRIVDIYGGVAFEPQIEALKRGADIVV 195
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR+IDL+++ L+L+ V+ VVLDEAD+ML +GF DVE +L R+P +R M+FSATM
Sbjct: 196 GTPGRLIDLLRQGVLHLNGVENVVLDEADEMLDLGFLPDVETLLSRIPADRHMMLFSATM 255
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
P + +L K++ P + DQ I + M K E
Sbjct: 256 PGPVITLARKFMTQPTHIRAQDPDDQGQTVNTVQQVIYRTHAMNKTE 302
>gi|422558548|ref|ZP_16634288.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
Length = 564
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 115 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 272
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 162/273 (59%), Gaps = 17/273 (6%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S++++ AL G K PIQ A ++P M G+D++G+A+TGTGKT AF +P+L+K+
Sbjct: 10 ELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT 69
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALD 219
P LVLAPTRELA QV + F A + + +YGG + Q+ AL
Sbjct: 70 SQT-------TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G +VGTPGRV+D ++R L L +Q +VLDEAD+ML +GF +D+E ILE P RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQL 182
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL 339
+FSATMP I+ + N++L+NP+ V + +S Q + I + S + K+E + L
Sbjct: 183 ALFSATMPEQIKRVANQHLRNPVHVRI--ESSQTTVESIEQRFVQVSQH-NKLEALVRVL 239
Query: 340 KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRG 372
+ V T ++++++ + C+ ++ K RG
Sbjct: 240 E--VENTEGVIIFVRT--RNSCVELAEKLEARG 268
>gi|452960046|gb|EME65376.1| cold-shock DEAD-box protein [Rhodococcus ruber BKS 20-38]
Length = 633
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 133/207 (64%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LDI ++ AL+ G PIQ A + P ++GRD++G A+TGTGKT AF +PIL +
Sbjct: 13 FADLDIDARVLQALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSR 72
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I ++ P L+LAPTRELA QV + F + + P L + +YGG Q+
Sbjct: 73 IDTTVKR------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSG 126
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G +VGTPGRVID + + L++SE++F+VLDEAD+ML++GF EDVE IL P+++
Sbjct: 127 LRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESK 186
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMP IR L+ +YL +P+ +
Sbjct: 187 QVALFSATMPGAIRRLSKQYLHDPVEI 213
>gi|310752293|gb|ADP09454.1| ATP-dependent RNA helicase [uncultured marine crenarchaeote E48-1C]
Length = 443
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 155/270 (57%), Gaps = 24/270 (8%)
Query: 70 DFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAV 129
+ K+ W+H ++ ++D L +SQ+++ + G LFPIQ
Sbjct: 7 NVKNFCDWRHKHMQIE---CFED-----------LPLSQEVMNGIEELGFRNLFPIQAQA 52
Query: 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189
+ P ++G+D+IG+A+TGTGKT AFGIP+++++ + R + LVL PTRELA QV
Sbjct: 53 IIPLLEGKDVIGQAQTGTGKTAAFGIPMVERL------NPRNNSVQGLVLEPTRELAIQV 106
Query: 190 EKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+ + + +YGGTPI Q+ AL GV VVGTPGRVID IKR L+L+ V+
Sbjct: 107 AEHISRISKYAAFKVLPIYGGTPIRKQIFALKRGVHVVVGTPGRVIDHIKRGTLDLASVK 166
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF +D++ IL +P NRQ+ +FSAT+ + ++ N+Y+K P + LV
Sbjct: 167 VVVLDEADRMLDMGFIDDIDYILSNVPTNRQTSLFSATIDQSVMNICNRYMKEPEKI-LV 225
Query: 308 GDSDQKLADGISLYSIATSMN-MQKVENAL 336
+ L Y + N Q + N L
Sbjct: 226 SKDEIALTQIEQYYMVVNPRNKFQVLRNIL 255
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 133/206 (64%), Gaps = 14/206 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L++++ I+ A+ G + IQ V+ +QG D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELNLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNP---LCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISH 213
+ I G N CLVL PTRELA QV E + + VYGG I
Sbjct: 61 NNI---------GSNEGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDR 111
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++A+ GVD ++GTPGRV+DLIKR+ L L++V+++VLDEAD+ML +GF +D++ I+
Sbjct: 112 QIKAIKRGVDIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHT 171
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLK 299
+ RQ+MMFSATMP I++L KY+K
Sbjct: 172 NKERQTMMFSATMPDEIKNLAKKYMK 197
>gi|407275347|ref|ZP_11103817.1| cold-shock DEAD-box protein, partial [Rhodococcus sp. P14]
Length = 587
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 133/207 (64%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LDI ++ AL+ G PIQ A + P ++GRD++G A+TGTGKT AF +PIL +
Sbjct: 13 FADLDIDARVLQALSDVGYENPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFAVPILSR 72
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRA 217
I ++ P L+LAPTRELA QV + F + + P L + +YGG Q+
Sbjct: 73 IDTAVKR------PQALILAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSG 126
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G +VGTPGRVID + + L++SE++F+VLDEAD+ML++GF EDVE IL P+++
Sbjct: 127 LRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVERILADTPESK 186
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q +FSATMP IR L+ +YL +P+ +
Sbjct: 187 QVALFSATMPGAIRRLSKQYLHDPVEI 213
>gi|325068862|ref|ZP_08127535.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
Length = 470
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 135/217 (62%), Gaps = 9/217 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
+ +DE + + L + D++ A+ G IQK + + GRD++G A+TGTGKT A
Sbjct: 168 AQEDEEITFADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAA 227
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGT 209
FG+P+LD + R LVLAPTRELA Q + + A L+ + VYGG
Sbjct: 228 FGLPLLDAV------DSRDNVVQALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGA 281
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
P Q+ AL G VVGTPGRVIDLI + AL L +V++ VLDEAD+ML +GFAEDVE I
Sbjct: 282 PYGPQIGALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETI 341
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
E LP +R++ +FSATMPP I+++ ++L P+ V++
Sbjct: 342 AESLPTDRRTALFSATMPPAIQAVARQHLHEPVQVEV 378
>gi|419706526|ref|ZP_14234046.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
gi|383283761|gb|EIC81705.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
Length = 527
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S++I +A+ G K PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSENIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|342213561|ref|ZP_08706286.1| DEAD/DEAH box helicase [Propionibacterium sp. CC003-HC2]
gi|340769105|gb|EGR91630.1| DEAD/DEAH box helicase [Propionibacterium sp. CC003-HC2]
Length = 560
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 268
>gi|424659059|ref|ZP_18096310.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
gi|408053406|gb|EKG88421.1| cold-shock DEAD box protein A [Vibrio cholerae HE-16]
Length = 646
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L+NP VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG-SNQTVA 218
>gi|345862983|ref|ZP_08815196.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125866|gb|EGW55733.1| DEAD/DEAH box helicase-like protein [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 606
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 9/220 (4%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
S D + L +S+ I+ ALA G PIQ+A + P ++G+D++G+A+TGTGKT AF
Sbjct: 2 STDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAAF 61
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTP 210
+P+L +I + K P LVLAPTRELA QV + A + +YGG P
Sbjct: 62 ALPLLSRI-DLSRK-----TPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQP 115
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
HQ+R L GV VVGTPGRV+D I+R L L + +VLDEAD+ML +GF +DVE IL
Sbjct: 116 YDHQLRQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWIL 175
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
E+ PQ RQ +FSATMP IR + ++L +P + + +
Sbjct: 176 EQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEIKIAAKT 215
>gi|422860597|ref|ZP_16907241.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
Length = 523
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|157150549|ref|YP_001450886.1| DEAD/DEAH box helicase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
gordonii str. Challis substr. CH1]
Length = 523
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 139/212 (65%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP LV+APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422879322|ref|ZP_16925788.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|422929168|ref|ZP_16962110.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC
29667]
gi|422932139|ref|ZP_16965070.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|339615357|gb|EGQ20036.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC
29667]
gi|339618923|gb|EGQ23513.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
Length = 523
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|397686716|ref|YP_006524035.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 10701]
gi|395808272|gb|AFN77677.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM
10701]
Length = 553
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAR------REPQALILAPTRELALQVATAFETYSKQMPGVGVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS +QF+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQIIVATPGRLVDHLSRNSALLSTIQFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|427391479|ref|ZP_18885885.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732122|gb|EKU94934.1| hypothetical protein HMPREF9233_01388 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 567
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 143/231 (61%), Gaps = 13/231 (5%)
Query: 85 DDYVAYDDSS-KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRA 143
DD VA ++++ ++E + +S+++ ALA GI FPIQ L A+ D+IG+A
Sbjct: 15 DDAVAVENATGQEETRTFADFGVSEEVTRALADEGIIHPFPIQALTLPVALDRHDIIGQA 74
Query: 144 RTGTGKTLAFGIPILDKII--------KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195
+TGTGKTL FGIP+L+ I K EK+ +G P L + PTRELAKQV E
Sbjct: 75 KTGTGKTLGFGIPMLENTIGPGEEGWEKIPEKN-QGL-PQGLAILPTRELAKQVANELRM 132
Query: 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+A S+ + +YGG Q AL G + VVGTPGR+IDL++ +L L V+ +VLDE
Sbjct: 133 AAAHRSVRIVDIYGGRAYEPQQEALRRGAEIVVGTPGRIIDLMRHGSLRLDHVKTLVLDE 192
Query: 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
AD+ML +GF EDVE IL R+P+ R +M+FSATMP + S+ +Y+ P +
Sbjct: 193 ADEMLDLGFLEDVETILSRVPERRHTMLFSATMPGPVISMARRYMSKPTHI 243
>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
Length = 525
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKI 204
>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
SK187]
gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|365963017|ref|YP_004944583.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965259|ref|YP_004946824.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974190|ref|YP_004955749.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407935730|ref|YP_006851372.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|417929824|ref|ZP_12573208.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182]
gi|422387668|ref|ZP_16467780.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
gi|422450923|ref|ZP_16527636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453794|ref|ZP_16530481.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422475550|ref|ZP_16551997.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422510319|ref|ZP_16586465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422524064|ref|ZP_16600073.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422532031|ref|ZP_16607977.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422537070|ref|ZP_16612958.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422545096|ref|ZP_16620926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422560680|ref|ZP_16636367.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|422579282|ref|ZP_16654805.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
SK187]
gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|340773947|gb|EGR96439.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182]
gi|365739698|gb|AEW83900.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741940|gb|AEW81634.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744189|gb|AEW79386.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904311|gb|AFU41141.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|456738446|gb|EMF63013.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 560
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 268
>gi|422307071|ref|ZP_16394241.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
CP1035(8)]
gi|408624390|gb|EKK97337.1| DEAD/DEAH box helicase family protein, partial [Vibrio cholerae
CP1035(8)]
Length = 490
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 218
>gi|422852083|ref|ZP_16898753.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
Length = 523
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422392322|ref|ZP_16472392.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
gi|422426148|ref|ZP_16503072.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422433509|ref|ZP_16510377.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436072|ref|ZP_16512929.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422438394|ref|ZP_16515238.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422444387|ref|ZP_16521181.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422445086|ref|ZP_16521840.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422462176|ref|ZP_16538800.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422478561|ref|ZP_16554980.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422493619|ref|ZP_16569919.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422501646|ref|ZP_16577900.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422516579|ref|ZP_16592688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422522165|ref|ZP_16598195.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422527552|ref|ZP_16603542.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422543216|ref|ZP_16619066.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422548140|ref|ZP_16623956.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550025|ref|ZP_16625825.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
Length = 564
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 115 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 272
>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 539
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 133/207 (64%), Gaps = 9/207 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
S IS+ I A+ G + PIQ+ + ++G D+IG+A+TGTGKT AFGIP++DK+
Sbjct: 5 SDFQISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVIDKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ R L+L PTRELA QV E + + + T+ +YGG I HQ++AL
Sbjct: 65 TE-------ERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALK 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV V+GTPGR++D I+R L L++V +VLDEAD+ML +GF +D+E IL + RQ+
Sbjct: 118 QGVQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQT 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSATMPP I+ L+ +Y+ P TV +
Sbjct: 178 LLFSATMPPAIKKLSRRYMTTPKTVTI 204
>gi|422876910|ref|ZP_16923380.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
Length = 523
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422871364|ref|ZP_16917857.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
Length = 523
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSTELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422855974|ref|ZP_16902632.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
Length = 523
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422853805|ref|ZP_16900469.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|422863055|ref|ZP_16909687.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|422883664|ref|ZP_16930113.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
Length = 523
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase [Anabaena variabilis ATCC 29413]
gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
29413]
Length = 513
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
L +L ISQ+ V L + G + IQ + + GRD++G+++TGTGKT AF +PI
Sbjct: 2 NLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPI 61
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
L+++ + + +VL PTRELA QV + L T+ +YGG I QM
Sbjct: 62 LERL------DPQQKAVQAIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQM 115
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GV VVGTPGRVIDL++R L L +V++ VLDEAD+MLS+GF +DVE IL + PQ
Sbjct: 116 LQLKRGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQ 175
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+ +FSATMPP IR L NK+L++P+TV
Sbjct: 176 ERQTALFSATMPPSIRMLVNKFLRSPVTV 204
>gi|422825892|ref|ZP_16874071.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
Length = 523
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422495471|ref|ZP_16571758.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
Length = 560
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 268
>gi|422427756|ref|ZP_16504667.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422530226|ref|ZP_16606190.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422539124|ref|ZP_16614997.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|422571758|ref|ZP_16647339.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
Length = 560
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 268
>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
Length = 647
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P +VLAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLGQ------RKPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++S+ ++L++P T+D+ G
Sbjct: 177 APESAQRVLFSATMPPMLKSIVERFLRDPETIDVAG 212
>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
Length = 576
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 238
>gi|422518910|ref|ZP_16594978.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
Length = 564
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 115 ITLPGDEGWGELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 272
>gi|123966425|ref|YP_001011506.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9515]
gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9515]
Length = 595
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 147/244 (60%), Gaps = 14/244 (5%)
Query: 70 DFKSSIAWQHAQSAVDDY--VAYDDSSKDEGLDISK----LDISQDIVAALARRGISKLF 123
+F + +H +++ + +D E DI K ++ I+ +L +G
Sbjct: 16 NFGEETSSKHDSKEIENNLKIISEDKLSAEKEDIEKGFACFGFNKLILNSLENKGYKIPT 75
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQKA + M GRD++G+A+TGTGKT AF +PI++K+ ++ + N LV+ PTR
Sbjct: 76 PIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEKL-----ENNKESNAKVLVMTPTR 130
Query: 184 ELAKQVEKEFHE---SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA 240
ELA QV F + +L T+ +YGGT +Q+ +L D VVGTPGR++D I++
Sbjct: 131 ELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKRKTDVVVGTPGRIMDHIRQGT 190
Query: 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
++ + +VLDEAD+ML +GF ED+E I+++LP+N+Q ++FSATMP IR++ KYL +
Sbjct: 191 FKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSATMPNEIRNIAKKYLND 250
Query: 301 PLTV 304
P +
Sbjct: 251 PAEI 254
>gi|421616413|ref|ZP_16057426.1| DEAD/DEAH box helicase [Pseudomonas stutzeri KOS6]
gi|409781638|gb|EKN61217.1| DEAD/DEAH box helicase [Pseudomonas stutzeri KOS6]
Length = 556
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P L + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGLGVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|422881818|ref|ZP_16928274.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
Length = 523
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|422821668|ref|ZP_16869861.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|422846217|ref|ZP_16892900.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
Length = 523
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 132/207 (63%), Gaps = 7/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + ++ L G + PIQ+ + P ++GRD++G+A TGTGKT AF +P+L +I
Sbjct: 22 AALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRI 81
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALD 219
HG + P LVL PTRELA QV + L + +YGG + Q++AL
Sbjct: 82 -----AHGPRQRPTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALR 136
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV+ +V TPGR +D ++R L L+++Q VVLDEAD+ML +GFA+D++ ILE+ P +Q+
Sbjct: 137 RGVEVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQT 196
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMPP I S+ ++LKNP+ V +
Sbjct: 197 ALFSATMPPRIASIARRHLKNPVDVTI 223
>gi|422486274|ref|ZP_16562630.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
Length = 560
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 136/219 (62%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A T + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 268
>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
parasanguinis F0405]
gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
parasanguinis F0405]
Length = 536
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 155/249 (62%), Gaps = 17/249 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + ++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDVDNTVIQ------ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM 327
RQ+++FSATMP I+ + +++K P LT DLV ++ +G ++ M
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234
Query: 328 NMQKVENAL 336
++++ E A+
Sbjct: 235 DVEQPELAI 243
>gi|392945367|ref|ZP_10311009.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
gi|392288661|gb|EIV94685.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
Length = 575
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 139/219 (63%), Gaps = 9/219 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
DD+ G ++L + ++ +LA G + PIQ+ + P + GRD++G+A TGTGKT
Sbjct: 20 DDAGDVTGF--AELALRPGLLRSLAALGYEEPTPIQREAVPPLLTGRDLLGQAATGTGKT 77
Query: 151 LAFGIPILDKIIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYG 207
AF +P+L+++ + HG P LVL PTRELA QV + H L + VYG
Sbjct: 78 AAFALPLLNRLADARDGDHG----PQALVLVPTRELAIQVSEAIHRYGRDLGARVLPVYG 133
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G PI Q+RAL G+D VV TPGR +D + R L L ++ VVLDEAD+ML +GFA+D+E
Sbjct: 134 GAPIGRQVRALLQGIDVVVATPGRALDHMGRGTLRLDDLDTVVLDEADEMLDMGFADDIE 193
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
ILE+ P+ RQ+++FSAT+PP + + ++L++P+ + +
Sbjct: 194 AILEQAPEGRQTVLFSATLPPRMDEIARRHLRDPVRIQI 232
>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 562
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 140/230 (60%), Gaps = 8/230 (3%)
Query: 92 DSSKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
D+S +I+ D + +I++ALA GI FPIQ L A+ G D+IG+A+TGTGK
Sbjct: 6 DTSHPHAPEITFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGK 65
Query: 150 TLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTI 203
TL FG+P+L+ ++ + R P L +APTRELA QV + + + +
Sbjct: 66 TLGFGVPMLNSVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVL 125
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
VYGG Q+ AL GV+ VVGTPGR+IDL K+ L+LS+ + VVLDEAD+ML +GF
Sbjct: 126 TVYGGRAYEPQVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFL 185
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQK 313
DVE ++ P +RQ+M+FSATMP I +L +Y+ P + +GD ++
Sbjct: 186 PDVETLMSLTPASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENEN 235
>gi|422865943|ref|ZP_16912568.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
Length = 523
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGIKFMKEPEHVKI 204
>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
Length = 651
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 228
>gi|422824031|ref|ZP_16872219.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|422858936|ref|ZP_16905586.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
Length = 523
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPNHVKI 204
>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase, partial [Actinomyces sp. oral taxon 171
str. F0337]
gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 471
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 156/266 (58%), Gaps = 13/266 (4%)
Query: 80 AQSAVDDYVAYDDSSKDEGLDISK-----LDISQDIVAALARRGISKLFPIQKAVLEPAM 134
A + V D D + + + D+S+ D+ +I AL+ +GI+ FPIQ L A+
Sbjct: 46 AHAPVLDEATPDITDEGDRTDLSRKTFADFDVEPEICEALSAKGITHPFPIQALTLPVAL 105
Query: 135 QGRDMIGRARTGTGKTLAFGIPILDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQV 189
+G+D+IG+A+TGTGKTL FGIP+L + ++E G +P L++ PTRELAKQV
Sbjct: 106 EGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGWDEDPASG-SPQALIILPTRELAKQV 164
Query: 190 EKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247
+E +A ++ + VYGG Q+ L+ G + VVGTPGR+IDL++R L+L+ V
Sbjct: 165 AEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVT 224
Query: 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
VVLDEAD+ML +GF DVE IL R +R +M+FSATMP + +L +Y+ P +
Sbjct: 225 TVVLDEADEMLDLGFLPDVEKILARTRTDRHTMLFSATMPGAVVALARRYMTRPTHIRAQ 284
Query: 308 GDSDQKLADGISLYSIATSMNMQKVE 333
D+ + + + +M KVE
Sbjct: 285 DPGDEGMTVQTVQQVVYRTHSMNKVE 310
>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
Length = 523
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L++++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|182627117|ref|ZP_02954835.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
gi|177907506|gb|EDT70164.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
Length = 324
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 135/201 (67%), Gaps = 12/201 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + ++ A+ G + IQ + A++G D+IG+A+TGTGKT AFG I++
Sbjct: 9 LGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINNA-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEF-----HESAPSLDTICVYGGTPISHQMRAL 218
+ G+ ++P L+LAPTRELA QV +E HE L + +YGG PI Q+RAL
Sbjct: 67 --DFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK---LSVLPIYGGQPIDRQIRAL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGRV+DLI+R +L L+++ F+VLDEAD+ML++GF +D+E I++ L +RQ
Sbjct: 122 KNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQ 181
Query: 279 SMMFSATMPPWIRSLTNKYLK 299
+++FSATMPP I+ L Y+K
Sbjct: 182 TLLFSATMPPQIKKLARNYMK 202
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 138/208 (66%), Gaps = 8/208 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S+L++S ++ ++ R G + PIQ + +++G+D+IG+A+TGTGKT AFGIP+++K
Sbjct: 4 FSELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEK 63
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
I N N L++APTRELA QV +E ++ + + VYGG I+ Q+RA+
Sbjct: 64 IDTKNT------NVQGLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAM 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +VGTPGR++D I R L L +V +VLDEAD+ML++GF +D+E IL+ +P+ RQ
Sbjct: 118 KKGPHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSATMP IR + ++ NP TV +
Sbjct: 178 TLLFSATMPGPIRKIAENFMTNPETVKV 205
>gi|421871323|ref|ZP_16302945.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372459950|emb|CCF12494.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 506
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 135/202 (66%), Gaps = 8/202 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S ++ +++ G + PIQ + A+ GRD+IG+A+TGTGKT+AFGIP+++KI
Sbjct: 5 NELGLSPSVLRSISNMGFEEATPIQALTIPVALTGRDLIGQAQTGTGKTVAFGIPMIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ H +G +VLAPTRELA QV +E + + T+ +YGG I Q+RAL
Sbjct: 65 -DTSSNHIQG-----IVLAPTRELAVQVSEELIKLGQYTGIKTLPIYGGQDIMRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+V TPGR+ID I R + L +Q +VLDEAD+ML++GF E++E ILE++P RQ+
Sbjct: 119 KNPHVIVATPGRLIDHINRRTIRLQNIQTLVLDEADEMLNMGFIEEIESILEQIPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNP 301
++FSATMP I SL +YLKNP
Sbjct: 179 LLFSATMPRQIESLAQRYLKNP 200
>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
Length = 653
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 12 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 71
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 72 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 125
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 126 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 185
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 186 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 228
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L+I+ I+ A+ G PIQ A + ++GRD++G+A+TGTGKT AFGIP+L+K
Sbjct: 15 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRA 217
+ + + P ++L PTRELA QV E + A + + +YGG I++Q+R+
Sbjct: 75 M------DTKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRS 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G + +VGTPGR++D ++R+ L L +++ VVLDEAD+ML++GF ED+E IL+ +P+ R
Sbjct: 129 LKTGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEER 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
Q+++FSATMP I +T KY K+ + +V
Sbjct: 189 QTLLFSATMPKAILDITKKYQKDSKLIKVV 218
>gi|417933911|ref|ZP_12577231.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
gi|340770481|gb|EGR92996.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
Length = 525
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
gi|227120002|ref|YP_002821897.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
Length = 663
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 82 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 135
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 136 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 196 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 238
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 12/215 (5%)
Query: 99 LDISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K + IS+ I A+A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+ I N R+ +VL PTRELA QV E + A + T+ +YGG PI
Sbjct: 61 PILETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV V+GTPGR ID I R L + V+ ++LDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+P+ RQ+ FSATMP I LT +Y K+P + +V
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV 209
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 12/215 (5%)
Query: 99 LDISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K + IS+ I A+A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+ I N R+ +VL PTRELA QV E + A + T+ +YGG PI
Sbjct: 61 PILETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+++L GV V+GTPGR ID I R L + V+ ++LDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+P+ RQ+ FSATMP I LT +Y K+P + +V
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV 209
>gi|427702212|ref|YP_007045434.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345380|gb|AFY28093.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 640
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 139/215 (64%), Gaps = 13/215 (6%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ Q+++ LA G + PIQKA + M GRD++G+A+TGTGKT AFG+P+L+++
Sbjct: 85 LRQELLDGLAAIGFEEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFGLPLLERLDPGQ 144
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPISHQMRALDYGV 222
R P LVL PTRELA QV + F+ A + + VYGG Q++ L GV
Sbjct: 145 ------RTPQVLVLTPTRELAMQVAEAFNSYAARMKGVKVLPVYGGADFRDQIQQLRRGV 198
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DV+ +LE+LP RQ ++F
Sbjct: 199 QIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVKWVLEQLPAERQVVLF 258
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317
SATMPP IR ++ +L+NP + + QK ADG
Sbjct: 259 SATMPPEIRRISQNHLRNPAEITI----RQKAADG 289
>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
Length = 603
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 131/214 (61%), Gaps = 9/214 (4%)
Query: 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153
+ E + + L +SQ + AL G PIQ + + GRD+IG+A+TGTGKT AF
Sbjct: 7 EQKESVRFADLSLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAF 66
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTP 210
+P+L ++ NE P ++LAPTRELA QV + + L+ +YGGT
Sbjct: 67 ALPLL-SMLDPNED-----GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTD 120
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
+ Q RALD VVGTPGR++D I+R +L+LS + VVLDEAD+ML +GF EDVE IL
Sbjct: 121 FTRQFRALDRKPAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWIL 180
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
E P RQ+ +FSATMPP I ++ K LK P+TV
Sbjct: 181 EHTPSERQTALFSATMPPRIAAIAKKQLKEPVTV 214
>gi|440684340|ref|YP_007159135.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428681459|gb|AFZ60225.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 503
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 131/208 (62%), Gaps = 8/208 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L +L ISQ+ VA L + G + IQ + + GRD++G+++TGTGKT AF +PIL
Sbjct: 3 LSFQELGISQERVAILEKMGFTTPTNIQAQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL 62
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+++ N+ R LVL PTRELA QV + L + +YGG I QM
Sbjct: 63 EQL-DVNK-----RAVQALVLTPTRELAMQVHDAISQFMGDDGLRVMAIYGGQSIDRQMS 116
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L GV VVGTPGRVIDL+ R L L +VQ+ VLDEAD+MLS+GF +DV IL + P+
Sbjct: 117 QLKRGVHMVVGTPGRVIDLLDRGCLKLDQVQWFVLDEADEMLSMGFIDDVIKILSQAPKE 176
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+ +FSATMPP IRSL NK+L +P TV
Sbjct: 177 RQTALFSATMPPSIRSLVNKFLNSPATV 204
>gi|414158100|ref|ZP_11414394.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
gi|410870645|gb|EKS18602.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
Length = 525
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 142/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI + E LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI-RIEEA-----TIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|343525265|ref|ZP_08762220.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343395535|gb|EGV08073.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 514
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI +P L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKIDT--------EDPTVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EDRQTLLFSATMPDAIKQIGVKFMKEPEHVKI 204
>gi|404260234|ref|ZP_10963530.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
gi|403401275|dbj|GAC01940.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia namibiensis NBRC
108229]
Length = 594
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 134/231 (58%), Gaps = 13/231 (5%)
Query: 74 SIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA 133
S + Q A D A+D G L+I + AA+ G PIQ A + P
Sbjct: 2 STSEQGEHGAPADTSAHDTP----GGTFDDLEIESRVRAAITDVGYETPSPIQAATIPPL 57
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
M GRD++G A+TGTGKT AF IPIL ++ R+P L+LAPTRELA QV + F
Sbjct: 58 MAGRDVVGLAQTGTGKTAAFAIPILSRL------DTSARSPQALILAPTRELALQVSEAF 111
Query: 194 HESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
+ P + + +YGG Q+ L G +VGTPGRVID + + L++S ++F+V
Sbjct: 112 GRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLV 171
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
LDEAD+ML++GFAEDVE IL P +Q +FSATMP IR L +YLK+P
Sbjct: 172 LDEADEMLTMGFAEDVERILAETPDTKQVALFSATMPSSIRRLAQRYLKSP 222
>gi|339007892|ref|ZP_08640466.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338775095|gb|EGP34624.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 506
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 135/202 (66%), Gaps = 8/202 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++L +S ++ +++ G + PIQ + A+ GRD+IG+A+TGTGKT+AFGIP+++KI
Sbjct: 5 NELGLSPSVLRSISNMGFEEATPIQALTIPVALTGRDLIGQAQTGTGKTVAFGIPMIEKI 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
+ H +G +VLAPTRELA QV +E + + T+ +YGG I Q+RAL
Sbjct: 65 -DTSSNHIQG-----IVLAPTRELAVQVSEELIKLGQYTGIKTLPIYGGQDIMRQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+V TPGR+ID I R + L +Q +VLDEAD+ML++GF E++E ILE++P RQ+
Sbjct: 119 KNPHVIVATPGRLIDHINRRTIRLQNIQTLVLDEADEMLNMGFIEEIESILEQIPDERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNP 301
++FSATMP I SL +YLKNP
Sbjct: 179 LLFSATMPRQIESLAQRYLKNP 200
>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
DSM 15894]
Length = 605
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 144/234 (61%), Gaps = 15/234 (6%)
Query: 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
D+S D + Q+IV AL GI+ FPIQ L A+Q D+IG+A+TGTGKTL FGIP+
Sbjct: 67 DVSFADFGVRQEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPL 126
Query: 158 LDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGT 209
L++++ ++E G+ P +V+APTRELA QV + ++ PSL I +YGG
Sbjct: 127 LNRVVAPGEPGWDELVAPGK-PQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGR 185
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q+ L G + VVGTPGR++DL+ + LNL + +VLDEAD+ML +GF DVE I
Sbjct: 186 AYEPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKI 245
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
L RLP R +M+FSATMP + S+ +Y+ P + D+ G+++ +I
Sbjct: 246 LSRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDE----GVTVKNI 295
>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
gi|417823279|ref|ZP_12469877.1| cold-shock DEAD box protein A [Vibrio cholerae HE48]
gi|419828553|ref|ZP_14352044.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|419833476|ref|ZP_14356937.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|419836530|ref|ZP_14359970.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46B1]
gi|421343387|ref|ZP_15793791.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43B1]
gi|421349335|ref|ZP_15799704.1| cold-shock DEAD box protein A [Vibrio cholerae HE-25]
gi|421355787|ref|ZP_15806118.1| cold-shock DEAD box protein A [Vibrio cholerae HE-45]
gi|422920214|ref|ZP_16953544.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02A1]
gi|423734953|ref|ZP_17708164.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|423810534|ref|ZP_17714585.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|423844428|ref|ZP_17718319.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|423875352|ref|ZP_17721990.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|423999832|ref|ZP_17742995.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02C1]
gi|424009340|ref|ZP_17752280.1| cold-shock DEAD box protein A [Vibrio cholerae HC-44C1]
gi|424011664|ref|ZP_17754509.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55B2]
gi|424021492|ref|ZP_17761245.1| cold-shock DEAD box protein A [Vibrio cholerae HC-59B1]
gi|424589187|ref|ZP_18028652.1| cold-shock DEAD box protein A [Vibrio cholerae CP1037(10)]
gi|424626901|ref|ZP_18065322.1| cold-shock DEAD box protein A [Vibrio cholerae HC-50A1]
gi|424627793|ref|ZP_18066126.1| cold-shock DEAD box protein A [Vibrio cholerae HC-51A1]
gi|424631593|ref|ZP_18069786.1| cold-shock DEAD box protein A [Vibrio cholerae HC-52A1]
gi|424638508|ref|ZP_18076475.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55A1]
gi|424642312|ref|ZP_18080154.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A1]
gi|424646919|ref|ZP_18084618.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A1]
gi|429885422|ref|ZP_19367011.1| Cold-shock DEAD-box protein A [Vibrio cholerae PS15]
gi|443525638|ref|ZP_21091795.1| cold-shock DEAD box protein A [Vibrio cholerae HC-78A1]
gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
gi|340049409|gb|EGR10325.1| cold-shock DEAD box protein A [Vibrio cholerae HE48]
gi|341631628|gb|EGS56512.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02A1]
gi|395941954|gb|EJH52631.1| cold-shock DEAD box protein A [Vibrio cholerae HC-43B1]
gi|395950457|gb|EJH61076.1| cold-shock DEAD box protein A [Vibrio cholerae HE-45]
gi|395955952|gb|EJH66546.1| cold-shock DEAD box protein A [Vibrio cholerae HE-25]
gi|408007902|gb|EKG45938.1| cold-shock DEAD box protein A [Vibrio cholerae HC-50A1]
gi|408018750|gb|EKG56181.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55A1]
gi|408019565|gb|EKG56962.1| cold-shock DEAD box protein A [Vibrio cholerae HC-56A1]
gi|408026495|gb|EKG63501.1| cold-shock DEAD box protein A [Vibrio cholerae HC-52A1]
gi|408038183|gb|EKG74537.1| cold-shock DEAD box protein A [Vibrio cholerae CP1037(10)]
gi|408039214|gb|EKG75506.1| cold-shock DEAD box protein A [Vibrio cholerae HC-57A1]
gi|408060259|gb|EKG94961.1| cold-shock DEAD box protein A [Vibrio cholerae HC-51A1]
gi|408623626|gb|EKK96580.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|408630406|gb|EKL03003.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|408637667|gb|EKL09695.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|408645684|gb|EKL17323.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|408646732|gb|EKL18314.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|408650800|gb|EKL22075.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|408843932|gb|EKL84071.1| cold-shock DEAD box protein A [Vibrio cholerae HC-02C1]
gi|408857080|gb|EKL96768.1| cold-shock DEAD box protein A [Vibrio cholerae HC-46B1]
gi|408862444|gb|EKM01960.1| cold-shock DEAD box protein A [Vibrio cholerae HC-59B1]
gi|408864364|gb|EKM03807.1| cold-shock DEAD box protein A [Vibrio cholerae HC-44C1]
gi|408867368|gb|EKM06729.1| cold-shock DEAD box protein A [Vibrio cholerae HC-55B2]
gi|429227775|gb|EKY33757.1| Cold-shock DEAD-box protein A [Vibrio cholerae PS15]
gi|443455970|gb|ELT19680.1| cold-shock DEAD box protein A [Vibrio cholerae HC-78A1]
Length = 643
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 218
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 33/248 (13%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 218 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 277
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM----- 215
++ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+
Sbjct: 278 LLGELQERKRGRAPQVLVLAPTRELANQVSKDFIDITKKLAVACFYGGTPYGGQIERMRN 337
Query: 216 ----------RALDY------------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
R D+ G+D +VGTPGR+ D ++ L+L++++ VVLDE
Sbjct: 338 GIDILVGTPGRIKDHLXYGGQLERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDE 397
Query: 254 ADQMLSVGFAEDVEVIL-----ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLV 307
DQML +GFA+ VE IL + N Q+++FSAT P W+ ++ KY+K+ VDL+
Sbjct: 398 VDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 457
Query: 308 GDSDQKLA 315
G QK A
Sbjct: 458 GKKTQKTA 465
>gi|358464311|ref|ZP_09174276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357067077|gb|EHI77207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 524
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|417819858|ref|ZP_12466473.1| cold-shock DEAD box protein A [Vibrio cholerae HE39]
gi|423941342|ref|ZP_17732907.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|423973094|ref|ZP_17736452.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
gi|340040716|gb|EGR01688.1| cold-shock DEAD box protein A [Vibrio cholerae HE39]
gi|408662755|gb|EKL33661.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|408666696|gb|EKL37474.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
Length = 643
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + ++GRD +G+A+TGTGKT AF
Sbjct: 2 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ K P +V+APTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLNLSQYK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L E +LDEAD+ML +GF +DV I+E
Sbjct: 116 LDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
+ P++ Q ++FSATMPP ++ + ++L++P VD+ G S+Q +A
Sbjct: 176 QAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAG-SNQTVA 218
>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 482
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 132/202 (65%), Gaps = 7/202 (3%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+I A L R+GI+ F IQ+ L A+QG D+IG+ARTG+GKTLAFGIP++ + + ++
Sbjct: 4 EICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRD 63
Query: 169 ----GRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRALDYGV 222
+G+ P L++APTRELA QV E L + VYGG Q+ AL+ GV
Sbjct: 64 YIDLPQGK-PQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGV 122
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR+IDL R L+LS V +VLDEAD+ML +GF DVE ++ P+ RQ+++F
Sbjct: 123 DIVVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLF 182
Query: 283 SATMPPWIRSLTNKYLKNPLTV 304
SATMP I +L Y+++P+ +
Sbjct: 183 SATMPGAIVALARSYMRHPMNI 204
>gi|409438235|ref|ZP_11265322.1| RNA helicase [Rhizobium mesoamericanum STM3625]
gi|408750101|emb|CCM76489.1| RNA helicase [Rhizobium mesoamericanum STM3625]
Length = 546
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 152/269 (56%), Gaps = 5/269 (1%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ L +S+ IVA L + GI K PIQ+ + ++GRD+IG A+TGTGKT AFG+P+++
Sbjct: 3 NFESLGVSKPIVATLFQLGIEKPTPIQEKAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K+I E+ R L+LAPTREL Q+ + L V GG I+ Q
Sbjct: 63 KLIP-EERRPDNRTTRTLILAPTRELVNQIAQNLKNFLRKSHLRINVVVGGVSINKQQLQ 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L+ G D +V TPGR++DL+ R A+ L+ V+++VLDEADQML +GF D+ I + +P+ R
Sbjct: 122 LEKGTDILVATPGRLLDLVARRAIGLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALF 337
Q+M+FSATMP I L +YL NP+TV++ K AD + Y + K +
Sbjct: 182 QTMLFSATMPKSIADLAGEYLTNPVTVEVTPPG--KAADKVEQYVHFVNGKNDKTDLLKK 239
Query: 338 SLKQNVMQTAWLMLWLKVIIVSLCMGISH 366
SL +N A + L K L + H
Sbjct: 240 SLTENPDGRAIVFLRTKHGAEKLMKHLDH 268
>gi|418966288|ref|ZP_13518034.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340413|gb|EID18712.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 514
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI +P L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKIDT--------EDPTVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EDRQTLLFSATMPDAIKQIGVKFMKEPTHVKI 204
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S L++ + ++ A+ G + IQ + + G DMIG+A+TGTGKTLAFG P
Sbjct: 2 ENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I ++ LVL PTRELA QV E A T + VYGG PI Q
Sbjct: 62 VLSQIESSDKIS-------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQ 114
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L GVD VVGTPGR++D IKRN L+LS V F+VLDE+D+ML++GF +D+E I++ L
Sbjct: 115 IKSLRRGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLN 174
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL 302
++RQ+++FSATMP I L +KY+KN +
Sbjct: 175 KDRQTLLFSATMPKEIAKLASKYMKNEV 202
>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase [Salinispora tropica CNB-440]
gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
Length = 621
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 138/212 (65%), Gaps = 4/212 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ E ++L ++ V AL GI++ F IQ+ L A++G D+IG+A TGTGKTL FG
Sbjct: 93 RPEAPTFAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFG 152
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPIS 212
+P+L+++ F G P LV+ PTREL QV K+ H + + + + +YGG
Sbjct: 153 VPLLERV--FAPAEGGDGTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYE 210
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL
Sbjct: 211 PQIEALRTGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAM 270
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
LP+ RQ+M+FSATMP I +L+ ++L+ P+T+
Sbjct: 271 LPEERQTMLFSATMPDPIVALSRRFLRRPVTI 302
>gi|333370948|ref|ZP_08462918.1| DEAD-box ATP-dependent RNA helicase YdbR [Desmospora sp. 8437]
gi|332976898|gb|EGK13720.1| DEAD-box ATP-dependent RNA helicase YdbR [Desmospora sp. 8437]
Length = 291
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ + G + PIQ + ++G D+IG+A+TGTGKT AFGIP+L+ + +
Sbjct: 13 IMKGIREMGFEEPSPIQAECIPAVLRGEDVIGQAQTGTGKTAAFGIPLLEHVDPGS---- 68
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVG 227
R +VLAPTRELA QV +E + A + T+ +YGG PI Q++AL GV V+G
Sbjct: 69 --RKVKAVVLAPTRELAIQVSEELRKIGRAKRVKTLPIYGGQPIGRQIKALKQGVQVVIG 126
Query: 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287
TPGR++D ++R L L +V+ +VLDEAD+ML +GF +D+E +++ LP+NRQ ++FSAT+P
Sbjct: 127 TPGRMLDHLRRGTLRLDDVEMLVLDEADEMLDMGFIDDIEAVMDHLPENRQLLLFSATIP 186
Query: 288 PWIRSLTNKYLKNP 301
P IR L KY+ P
Sbjct: 187 PAIRQLARKYMNKP 200
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 142/220 (64%), Gaps = 17/220 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L +S+D++ A+ G + PIQ + + G+D+IG+A+TGTGKT AF +PIL
Sbjct: 1 MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI K NE N LV++PTRELA Q ++E ++ + VYGG I Q++
Sbjct: 61 EKIDKSNE------NVQALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
+L VVGTPGR++D I+R+ L L VQ +VLDEAD+ML++GF +D+E I+++LP+
Sbjct: 115 SLKNHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+M+FSATMPP I+ + +++K+P LT DL+
Sbjct: 175 RQTMLFSATMPPEIKRVGVQFMKDPKHVKIKAKELTTDLI 214
>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
maris AB-18-032]
gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
AB-18-032]
Length = 563
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 141/212 (66%), Gaps = 3/212 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+ E ++L + V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FG
Sbjct: 21 RPEAPTFAELGARAETVEALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFG 80
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPIS 212
+P+L+++ E G G P LV+ PTREL QV K+ + + + + +YGG
Sbjct: 81 VPLLERVFAPGEGSGDGL-PQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYE 139
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GV+ +VGTPGR++DL K+ L L+ ++ +VLDEAD+ML +GF +DVE IL
Sbjct: 140 PQVEALRKGVEILVGTPGRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAM 199
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
LP++RQ+M+FSATMP I +L+ ++L++P+T+
Sbjct: 200 LPEDRQTMLFSATMPDPIVTLSRRFLRHPITI 231
>gi|423068160|ref|ZP_17056948.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0395]
gi|355367051|gb|EHG14764.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0395]
Length = 514
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI +P L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKIDT--------EDPTVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
++RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EDRQTLLFSATMPDAIKCIGVKFMKEPEHVKI 204
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 132/203 (65%), Gaps = 8/203 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D +L +++ I+ A+ G + IQ V+ ++G D+IG+A TGTGKTLA+G PI+
Sbjct: 1 MDFKELHLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPII 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ F+ G+ CLVL PTRELA QV E + + VYGG I Q++
Sbjct: 61 NN---FSSNDGK---VFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
A+ GVD VVGTPGRV+DLIKRN L+L V+++V+DEAD+M+ +GF +D++ I+ +
Sbjct: 115 AIKRGVDIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLK 299
RQ+MMFSATMP I++L KY+K
Sbjct: 175 RQTMMFSATMPDEIKNLAKKYMK 197
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 126/201 (62%), Gaps = 9/201 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
LDI +DI+ AL G PIQ + G+D+IG+A+TGTGKT AFGIP+++++
Sbjct: 9 LDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGIPMIERV-- 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDY 220
+ + + L++APTREL+ QV E F + T+ +YGG PIS Q++AL
Sbjct: 67 ----NPKNKAVQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKALKR 122
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
GV +VGTPGR++D I R L L EV VVLDEADQML +GF ED+E IL+ P RQ+
Sbjct: 123 GVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQTA 182
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
MFSAT+ I + KY+K P
Sbjct: 183 MFSATISREIERIAQKYMKQP 203
>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
Length = 537
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 178/327 (54%), Gaps = 32/327 (9%)
Query: 61 EFHAISRPLDFKSSIAWQHAQSAVDDYVAYD---DSSKDEGLDISKLDISQ--------- 108
E AIS + S++A AQ AVD A D +S D+ ++S I+
Sbjct: 28 ETQAIS--TETTSAVASTAAQVAVD-LSALDCASSTSADDSAEVSTTVIAATPSGFASFG 84
Query: 109 ---DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ AL G + PIQKA + + GRD++G+A+TGTGKT AF +P+L +
Sbjct: 85 FAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAAL---- 140
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGV 222
G+ R P LVL PTRELA QV F A P L + +YGG+ Q+ L GV
Sbjct: 141 --DGQQRTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKRGV 198
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGRV+D +++ L+LS ++ +VLDEAD+ML +GF +DVE +LE+LP RQ ++F
Sbjct: 199 QIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLF 258
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM-QKVENALFSLKQ 341
SATMPP IR +++KYL +P V + K AD + ++N QK+E L+
Sbjct: 259 SATMPPEIRRISHKYLNDPAEVTI----KTKGADSSRIRQRFITVNGPQKLEALTRVLES 314
Query: 342 NVMQTAWLMLWLKVIIVSLCMGISHKA 368
+ + K I V++ + K
Sbjct: 315 ETKEGVIIFARTKAITVTVAEALEAKG 341
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 128/210 (60%), Gaps = 11/210 (5%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L + +IV ALA RGI+ F IQ+ L A+ G D+IG+ARTG GKT FG+P+L +I
Sbjct: 49 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIA 108
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-----------DTICVYGGTPI 211
P LV+ PTREL QV ++ +A L + +YGGTP
Sbjct: 109 TGEATRSLDGTPRALVIVPTRELCVQVTQDLKIAATGLTASTENRTRPLKVLSIYGGTPY 168
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q+ AL+ GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E IL
Sbjct: 169 EQQVDALEKGVDVVVGTPGRLLDLANQSKLVLGKVEVLVLDEADEMLDLGFLPDIEKILR 228
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
+P+ RQ+M+FSATMP I +L +L P
Sbjct: 229 MVPEKRQTMLFSATMPGPIITLARTFLTKP 258
>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 552
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ + D+V + G + PIQ+A + ++GRD+IG+A+TGTGKT AFG+P+L +I
Sbjct: 7 ARFGLHPDLVQTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLLQRI 66
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD 219
R + LVLAPTRELA QV + + + VYGG Q+R+L
Sbjct: 67 TP------RQQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLR 120
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV+ +VGTPGR++DL+ + L+L+ V+ VVLDEAD+MLS+GF ED+E+IL+R+P RQ+
Sbjct: 121 QGVEVIVGTPGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQT 180
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
M+FSAT+ + L+ +YL++P TV +
Sbjct: 181 MLFSATISKRVLGLSARYLRDPETVSI 207
>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase [Isosphaera pallida ATCC 43644]
gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
43644]
Length = 422
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 10/221 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
SS ++L +S+ +AAL PIQ A + PA++GRD+IG+A+TGTGKT A
Sbjct: 7 SSPTPPASFAELGLSRLTLAALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAA 66
Query: 153 FGIPILDKIIKFNEKHGRGR-NPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGT 209
F +P++ E H G+ P ++LAPTREL +Q+ EF A D + +YGG
Sbjct: 67 FSLPLI-------EMHEPGQPGPQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGE 119
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
PI Q+R+L GVD VVGTPGRVID ++R ++L V VVLDEAD+ML +GF D+E I
Sbjct: 120 PIERQLRSLAKGVDVVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERI 179
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
L ++PQ Q+++ SAT+ P +R L +Y+ P+ ++L D
Sbjct: 180 LRKVPQPHQTLLLSATLSPEVRRLAARYMHEPVELNLSRDE 220
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 134/215 (62%), Gaps = 6/215 (2%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + +++S ++ A+ G PIQ + ++G+D+IG+A+TGTGKT AFGIP++
Sbjct: 22 LKFTDMNLSDEVKRAVEVMGFESPSPIQAEAIPHLLEGKDVIGQAQTGTGKTAAFGIPLI 81
Query: 159 DKIIKFNEKHGRGRN---PLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPIS 212
++IIK NE RN P ++L PTRELA QV E + A I VYGG I
Sbjct: 82 ERIIKANENSEFDRNSRLPKGIILCPTRELAVQVAGELEKLAKFRKDIFVTAVYGGESIE 141
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+R L GV VVGTPGR ID IKR L L E+ ++LDEAD+ML++GF ED+E+IL++
Sbjct: 142 KQIRNLRRGVQIVVGTPGRTIDHIKRGTLKLEEITNIILDEADEMLNMGFKEDIELILQQ 201
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+ Q+++FSATMP I + KY +P V ++
Sbjct: 202 ITTEHQTVLFSATMPKPILQIAKKYQNSPEIVKVI 236
>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 562
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 6/207 (2%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +++ ALA G + PIQ+ + + GRD++G+A TGTGKT AF +PIL +
Sbjct: 13 ADLQLRPELLTALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFALPILHRT 72
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
+ ++ +P LVL PTRELA QV FH + + VYGG PI Q++ L
Sbjct: 73 PRPADEP----DPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGRQIQVLK 128
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GVD VV TPGR +DLI R+ L L+ ++ VVLDEAD+ML +GFAED+E IL + P RQ+
Sbjct: 129 RGVDVVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQRQT 188
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDL 306
++FSAT+PP I + ++L+ P+ +++
Sbjct: 189 VLFSATVPPRIDGIARRHLREPVRIEI 215
>gi|419482639|ref|ZP_14022426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
gi|379579231|gb|EHZ44138.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
Length = 517
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 136/203 (66%), Gaps = 8/203 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 1 MSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKI---- 56
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
LV+APTRELA Q ++E S + VYGG+ I Q++AL G
Sbjct: 57 --RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAH 114
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ+++FS
Sbjct: 115 IVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFS 174
Query: 284 ATMPPWIRSLTNKYLKNPLTVDL 306
ATMP I+ + +++K P V +
Sbjct: 175 ATMPDAIKRIGVQFMKAPEHVKI 197
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G S L I ++AA+ G PIQ + ++GRD++G A+TGTGKT AF +P
Sbjct: 31 GPAFSTLGIDSRVLAAIEDLGYETPSPIQAETIPLLLEGRDVVGLAQTGTGKTAAFAVPA 90
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQ 214
L ++ + + +G P LVLAPTRELA QV + F A + + V YGG P Q
Sbjct: 91 LSRLAELADVNGPANTPQILVLAPTRELALQVAEAFTTYAKHIKGVTVLPVYGGAPYGPQ 150
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G VVGTPGRVID +++ +L+LS++Q++VLDEAD+ML +GFAE+V+ IL P
Sbjct: 151 LSGLRRGAQVVVGTPGRVIDHLQKGSLDLSDLQYMVLDEADEMLRMGFAEEVDQILSATP 210
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+Q+ +FSATMP I+ ++ KYL +P+ V
Sbjct: 211 DQKQTALFSATMPRAIQRISGKYLNDPVEV 240
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 18/231 (7%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ ++L+I +++ G +L PIQ+ + A+ G D+IG+A+TGTGKT AFGIP+L
Sbjct: 1 MEFNQLNIKPELIQIFDELGFEELTPIQRDAIPIALTGDDLIGQAQTGTGKTAAFGIPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMR 216
+ + N R L++APTRELA QV++E + L VYGGTPI Q+
Sbjct: 61 EHLDLSN------RTIQGLIIAPTRELAIQVQEELYRYGKLLKAKVYSVYGGTPIGKQIE 114
Query: 217 ALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L Y +VGTPGR++DL+ RN L+ S+++ +VLDEAD+ML++GF ED+ I+ P
Sbjct: 115 RLKRYNPQIIVGTPGRILDLMNRNVLDFSQLEQLVLDEADEMLNMGFIEDIRAIIRATPD 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADG 317
+RQ+M+FSATMP I++L ++L++P +T DL+ K +DG
Sbjct: 175 SRQTMLFSATMPSEIKALAEEFLRHPQHVQIEAQQMTADLIDQYFTKCSDG 225
>gi|409392122|ref|ZP_11243740.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
gi|403197987|dbj|GAB86974.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rubripertincta
NBRC 101908]
Length = 595
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 133/231 (57%), Gaps = 13/231 (5%)
Query: 74 SIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA 133
S + Q A D A+D G LDI + AA+ G PIQ A + P
Sbjct: 2 STSGQGEHGAPADPSAHDIP----GGTFDDLDIEPRVRAAITDVGYETPSPIQAATIPPL 57
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
M GRD++G A+TGTGKT AF IPIL ++ R P L+LAPTRELA QV + F
Sbjct: 58 MAGRDVVGLAQTGTGKTAAFAIPILSRL------DTSARTPQALILAPTRELALQVSEAF 111
Query: 194 HESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
+ P + + +YGG Q+ L G +VGTPGRVID + + L++S ++F+V
Sbjct: 112 GRYSAHMPEVKVLPIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLV 171
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
LDEAD+ML++GFAEDVE IL P +Q +FSATMP IR L +YLK+P
Sbjct: 172 LDEADEMLTMGFAEDVERILAETPDTKQVALFSATMPSSIRRLAQRYLKSP 222
>gi|407648258|ref|YP_006812017.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311142|gb|AFU05043.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 593
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 9/222 (4%)
Query: 86 DYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRART 145
D V D+ ++G + L I I+AA+A G PIQ A + P + G D++G A+T
Sbjct: 7 DSVPGDNDRDNDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADVVGLAQT 66
Query: 146 GTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDT 202
GTGKT AF IPIL + G+ P LVLAPTRELA QV + F A P L
Sbjct: 67 GTGKTAAFAIPILMGL------DTSGKLPQSLVLAPTRELAIQVAEAFGRYATHIPGLHV 120
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ +YGG Q+ L G VVGTPGRVID +++ L+LS+++++VLDEAD+ML +GF
Sbjct: 121 LPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLKYLVLDEADEMLKMGF 180
Query: 263 AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
EDVE IL+ P +Q +FSATMP IR ++ +YL +P+ +
Sbjct: 181 QEDVERILKDTPAGKQVALFSATMPAAIRKISKQYLNDPVEI 222
>gi|343497470|ref|ZP_08735537.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
gi|342818317|gb|EGU53184.1| cold-shock DEAD-box protein A [Vibrio nigripulchritudo ATCC 27043]
Length = 621
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S+L ++ I+++L G PIQ A + ++G+D +G+A+TGTGKT AF
Sbjct: 2 QDSVIQFSELALNDAILSSLEGMGFVSPTPIQAAAIPHLLEGKDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKLDLSQ------RKPQAIVLAPTRELAIQVAAEMKNLGQNIKGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTWIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+ P Q ++FSATMPP ++++ ++L+NP +D+ G
Sbjct: 176 QAPDTAQRVLFSATMPPMLKNIVERFLRNPEHIDVAG 212
>gi|427706220|ref|YP_007048597.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427358725|gb|AFY41447.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 512
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
L +L ISQD L + G + IQ + + GRD++G+++TGTGKT AF +PI
Sbjct: 2 NLSFLELGISQDRAELLEKMGFTAPTNIQIQAIPQLLSGRDVVGQSQTGTGKTAAFSLPI 61
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
L+++ N+ R +VL PTRELA QV + SL + +YGG I Q+
Sbjct: 62 LERL-DVNQ-----RAVQAIVLTPTRELAIQVHDAISQFIGNSSLRALAIYGGQSIDRQI 115
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GV VVGTPGRVIDL++R L L +V++ VLDEAD+MLS+GF +DVE IL + PQ
Sbjct: 116 MQLKRGVHVVVGTPGRVIDLLERGCLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQ 175
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+RQ+ +FSATMPP IR L NK+L +P+TV
Sbjct: 176 DRQTALFSATMPPSIRMLVNKFLHSPVTV 204
>gi|418171721|ref|ZP_12808345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|419451027|ref|ZP_13991013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|353835458|gb|EHE15552.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|379622732|gb|EHZ87366.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
Length = 517
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 136/203 (66%), Gaps = 8/203 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 1 MSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKI---- 56
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
LV+APTRELA Q ++E S + VYGG+ I Q++AL G
Sbjct: 57 --RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAH 114
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ+++FS
Sbjct: 115 IVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFS 174
Query: 284 ATMPPWIRSLTNKYLKNPLTVDL 306
ATMP I+ + +++K P V +
Sbjct: 175 ATMPDAIKRIGVQFMKAPEHVKI 197
>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
gi|417971974|ref|ZP_12612890.1| hypothetical protein CgS9114_13156 [Corynebacterium glutamicum
S9114]
gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043728|gb|EGV39416.1| hypothetical protein CgS9114_13156 [Corynebacterium glutamicum
S9114]
Length = 424
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 2/206 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI++ F IQ+ L A+ G D IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV + +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL KR AL+L +V +VLDEAD+ML +GF D+E IL L Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+M+FSATMP I +L +L P+ +
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHI 215
>gi|23308803|ref|NP_599999.2| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
glutamicum ATCC 13032]
gi|385142918|emb|CCH23957.1| putative helicase [Corynebacterium glutamicum K051]
Length = 424
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 2/206 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI++ F IQ+ L A+ G D IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV + +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL KR AL+L +V +VLDEAD+ML +GF D+E IL L Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+M+FSATMP I +L +L P+ +
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHI 215
>gi|409397875|ref|ZP_11248733.1| DEAD/DEAH box helicase [Pseudomonas sp. Chol1]
gi|409117614|gb|EKM94041.1| DEAD/DEAH box helicase [Pseudomonas sp. Chol1]
Length = 556
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + VYGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAVYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|418464893|ref|ZP_13035832.1| cold-shock deAd box protein a [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756848|gb|EHK91005.1| cold-shock deAd box protein a [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 592
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 3 LGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIAP 62
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 63 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 116
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 117 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 176
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 177 LFSATMPEPIRRITKRFMKDPQEIKI 202
>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
51100]
gi|417922852|ref|ZP_12566338.1| DEAD/DEAH box helicase [Streptococcus cristatus ATCC 51100]
gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
51100]
gi|342832000|gb|EGU66303.1| DEAD/DEAH box helicase [Streptococcus cristatus ATCC 51100]
Length = 524
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 139/212 (65%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|421765661|ref|ZP_16202442.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
gi|407625746|gb|EKF52434.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
Length = 543
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 147/230 (63%), Gaps = 10/230 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S+ I+ L G + PIQ+ ++ A+ GRD++G+A+TGTGKT AFG+P +
Sbjct: 1 MKFNELGLSEGIIETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N + LV+APTRELA Q ++E S L V+GG+ I Q++
Sbjct: 61 EKINPEN------KAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DL+KR AL+LS ++ ++LDEAD+ML++GF ED+E I+ + P
Sbjct: 115 ALRSGAHIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLEDIEFIIGKTPSE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326
RQ+++FSATMP I+ + K++KNP + + + + AD I Y + +
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIA--AKEMTADRIDQYYVKSK 222
>gi|385653332|ref|ZP_10047885.1| superfamily II DNA and RNA helicase, partial [Leucobacter
chromiiresistens JG 31]
Length = 608
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 9/221 (4%)
Query: 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152
++ E + + L ++ +++ A+ G IQ A + ++G D++G A+TGTGKT A
Sbjct: 12 ETEGERITFADLGLAPEVLRAVTDVGYETPSAIQAATIPTLLEGADVVGLAQTGTGKTAA 71
Query: 153 FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGT 209
F +PIL +I G+G P LVLAPTRELA QV + F A P + + VYGG
Sbjct: 72 FALPILSRITP-----GQG-VPQALVLAPTRELALQVCEAFESYAAHLPEVHLLPVYGGQ 125
Query: 210 PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269
Q+ AL GVD VVGTPGR++D +KR +L+L++++++VLDEAD+ML +GFAEDVE I
Sbjct: 126 AYGQQLSALRRGVDIVVGTPGRIMDHLKRGSLDLTQIKYLVLDEADEMLKMGFAEDVETI 185
Query: 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
L PQ +Q +FSATMP IR ++ +YL +P + + G +
Sbjct: 186 LADTPQEKQVALFSATMPAQIRRISQQYLNDPREIKIAGKT 226
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 132/205 (64%), Gaps = 9/205 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L++ + IV AL G + PIQ A + ++G D+IG+A+TGTGKT AFGIP++ I
Sbjct: 11 LELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQAITD 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYG 221
F KH + L++ PTRELA QV +E + + + + VYGG PI Q+RAL
Sbjct: 71 F--KHIQ-----ALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNN 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V V+GTPGR+ID I R + L ++F+VLDEAD+ML +GF +D+E I+ LP RQ+++
Sbjct: 124 VQIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
FSATMP I SLT KY+K P V +
Sbjct: 184 FSATMPRPILSLTKKYMKAPKNVTI 208
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 139/208 (66%), Gaps = 9/208 (4%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L+I+ I+ A+ G PIQ A + ++GRD++G+A+TGTGKT AFGIP+L+K+
Sbjct: 8 ELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKM- 66
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALD 219
+ + P ++L PTRELA QV E + A + + +YGG I++Q+R+L
Sbjct: 67 -----DTKVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLK 121
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
G + +VGTPGR++D ++R+ L L +++ VVLDEAD+ML++GF ED+E IL+ +P+ RQ+
Sbjct: 122 TGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQT 181
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLV 307
++FSATMP I +T KY K+ + +V
Sbjct: 182 LLFSATMPKAILDITKKYQKDSKLIKVV 209
>gi|418299947|ref|ZP_12911777.1| cold-shock dead-box protein A [Agrobacterium tumefaciens
CCNWGS0286]
gi|355534510|gb|EHH03818.1| cold-shock dead-box protein A [Agrobacterium tumefaciens
CCNWGS0286]
Length = 615
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 135/210 (64%), Gaps = 4/210 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ I AL +RG L P+Q+A+L P + +D + A+TG+GKT+AFGI + +++ +
Sbjct: 7 IAPAIAQALEKRGYKDLTPVQQAMLAPELADKDALVSAQTGSGKTVAFGIALATTLLRDD 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGV 222
+ G+ PL L +APTRELA QV++E +E A CV GG I ++ RAL+ G
Sbjct: 67 NRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCV-GGMDIRNERRALERGA 125
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
VVGTPGR+ D IKRNAL+LS ++ VVLDEAD+ML +GF ED+E ILE P +R+++MF
Sbjct: 126 HIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDRRTLMF 185
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
SAT+P I L Y KN + + + Q
Sbjct: 186 SATVPRSIAKLAESYQKNAVRIATASEQKQ 215
>gi|418246652|ref|ZP_12873046.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
gi|354509267|gb|EHE82202.1| hypothetical protein KIQ_14222 [Corynebacterium glutamicum ATCC
14067]
Length = 424
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 2/206 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +I AL GI++ F IQ+ L A+ G D IG+ARTG GKT FG+P+LD+
Sbjct: 10 FTELGVAVEITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA QV + +A +L YGGTP Q+ AL
Sbjct: 70 VFDSADVAETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDAL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR++DL KR AL+L +V +VLDEAD+ML +GF D+E IL L Q
Sbjct: 130 KVGVDVVVGTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+M+FSATMP I +L +L P+ +
Sbjct: 190 TMLFSATMPGAILTLARSFLNKPVHI 215
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 134/214 (62%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFGIP
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISH 213
+L K+ + + ++L PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAVILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G VVGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQVVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P+ RQ++MFSATMP I + K+ NP+TV ++
Sbjct: 176 PEERQTLMFSATMPQAIADIAKKFQDNPVTVRVI 209
>gi|26988598|ref|NP_744023.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|386013264|ref|YP_005931541.1| DEAD/DEAH box helicase [Pseudomonas putida BIRD-1]
gi|395444724|ref|YP_006384977.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida ND6]
gi|397693274|ref|YP_006531154.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida DOT-T1E]
gi|421522357|ref|ZP_15968999.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
gi|388558721|gb|AFK67862.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida ND6]
gi|397330004|gb|AFO46363.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida DOT-T1E]
gi|402753976|gb|EJX14468.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 559
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 134/208 (64%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 DVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSAT+P IRS+ ++L+ P V +
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI 210
>gi|392967949|ref|ZP_10333365.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387842311|emb|CCH55419.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 663
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 133/210 (63%), Gaps = 9/210 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ LDIS D++ A+ G PIQ + P + GRD+IG+A+TGTGKT AFGIP L+
Sbjct: 52 FADLDISDDLLQAVTDMGFVSPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIPALEM 111
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
I R+ LVL PTRELA QV E + A L +YGG I Q+R+
Sbjct: 112 I------DTSVRSVQVLVLCPTRELALQVADEIRKLAKYKRGLRVEAIYGGDSIERQIRS 165
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV V+GTPGRV+D ++RN L L V+ ++LDEAD+ML +GF ED+E ILE +P+ R
Sbjct: 166 LKGGVHIVIGTPGRVMDHMERNTLKLDNVRMMILDEADEMLDMGFREDIESILEDMPEER 225
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
Q+++FSATM I ++T K+ K+P+ V +V
Sbjct: 226 QTILFSATMSKPIMAITQKFQKDPVLVKVV 255
>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
Length = 374
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + S L++ + ++ A+ G + IQ + + G DMIG+A+TGTGKTLAFG P
Sbjct: 2 ENIKFSDLNLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L +I ++ LVL PTRELA QV E A T + VYGG PI Q
Sbjct: 62 VLSQIESSDKIS-------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQ 114
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+++L GVD VVGTPGR++D IKRN L+LS V F+VLDE+D+ML++GF +D+E I++ L
Sbjct: 115 IKSLRRGVDVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLN 174
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPL 302
++RQ+++FSATMP I L +KY+KN +
Sbjct: 175 KDRQTLLFSATMPKEIAKLASKYMKNEV 202
>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 560
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 134/208 (64%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 DVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSAT+P IRS+ ++L+ P V +
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI 210
>gi|385792629|ref|YP_005825605.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
Length = 569
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
I + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NI----DLKSRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDE 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|422849128|ref|ZP_16895804.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
Length = 523
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 139/212 (65%), Gaps = 12/212 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + AM G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPL--CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+KI NP L++APTRELA Q ++E S + VYGG+ I Q
Sbjct: 61 EKI--------DTDNPAVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQ 112
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
++AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ R+P
Sbjct: 113 IKALKSGAHIVVGTPGRLLDLIKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVP 172
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ RQ+++FSATMP I+ + K++K P V +
Sbjct: 173 EERQTLLFSATMPDAIKRIGVKFMKEPEHVKI 204
>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
ACN14a]
gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
ACN14a]
Length = 608
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 133/209 (63%), Gaps = 7/209 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L + +++ +LA G + PIQ+ + P + GRD++G+A TGTGKT AF +P+L +
Sbjct: 59 FAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHR 118
Query: 161 IIK-FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRA 217
+ HG P LVL PTRELA QV + H L + VYGG PI Q+RA
Sbjct: 119 LTDDRTGDHG----PQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRA 174
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GVD VV TPGR +D + R L L + VVLDEAD+ML +GFAED++ ILE+ PQ R
Sbjct: 175 LVQGVDVVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKR 234
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+++FSAT+PP + + ++L++P+ + +
Sbjct: 235 QTVLFSATLPPRMDQIARRHLRDPVRIQI 263
>gi|389772336|ref|ZP_10192123.1| DNA/RNA helicase, partial [Rhodanobacter sp. 115]
gi|388429626|gb|EIL86927.1| DNA/RNA helicase, partial [Rhodanobacter sp. 115]
Length = 223
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 127/193 (65%), Gaps = 9/193 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
AL G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I + K G+
Sbjct: 3 ALTDVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI---DLKPGK-- 57
Query: 173 NPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + F A P L + +YGG Q+ AL GV VVGTP
Sbjct: 58 -PQALVLAPTRELAIQVAEAFQRYAAHMPGLQVLPIYGGQSYGPQLHALRRGVQVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + + L+LSE++++VLDEAD+ML +GF +DVE +L+ P RQ +FSATMP
Sbjct: 117 GRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPERQVALFSATMPTV 176
Query: 290 IRSLTNKYLKNPL 302
IR + K+LK+P+
Sbjct: 177 IRKIAQKHLKDPV 189
>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 442
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D ++L + +++ L +K IQ ++ + G+D++G A+TG+GKT AF +PI+
Sbjct: 24 DFTQLGLIPELLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQ 83
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA----PSLDTICVYGGTPISHQM 215
K+ K + + G CLVL PTRELA+QV F + P+L T+ VYGG + QM
Sbjct: 84 KLAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQM 143
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
++L G D VV TPGR+IDLI NAL L +VLDEAD+MLS+GF E++ +L +LP+
Sbjct: 144 QSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPK 203
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL 314
+Q+++FSAT P +R LT+ L NP+ V L + L
Sbjct: 204 TKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTL 242
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 147/249 (59%), Gaps = 20/249 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +S+ + AL+ G + PIQKA + A+ G D+IG+A+TGTGKT AFGIPI +KI
Sbjct: 10 GEISLSKQTLQALSEMGFEEPSPIQKAAIPVAIDGVDLIGQAQTGTGKTAAFGIPICEKI 69
Query: 162 -IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
KF L+L PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 70 NPKFQAVQ-------ALILTPTRELAVQVSEEISKIGKYRHVKPLPIYGGQSIDRQIRAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNR 277
+G VVGTPGR++D + R L L V+ VVLDEAD+ML +GF ED+E IL+++P + R
Sbjct: 123 RFGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPREER 182
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMN 328
Q M+FSATMPP I+ L Y+ P LTV L+ + D I + ++ ++
Sbjct: 183 QVMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCRIID 242
Query: 329 MQKVENALF 337
M+ + A+
Sbjct: 243 MEDIGQAII 251
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 137/231 (59%), Gaps = 18/231 (7%)
Query: 88 VAYDDSSK---DEGLDISK------LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
VA D SK +E ++ K S D++ L +G PIQKA M GRD
Sbjct: 32 VASKDQSKLSINENPEVHKSLGFEGFGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRD 91
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA- 197
++G+A+TGTGKT AF +PIL++I + R P LVLAPTRELA QV F A
Sbjct: 92 LLGQAQTGTGKTAAFALPILERIKQDT------RAPQVLVLAPTRELAMQVADSFRAYAQ 145
Query: 198 --PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255
P + + VYGG+ Q+ AL GV VVGTPGRV+D I++ ++++ +VLDEAD
Sbjct: 146 GRPEVQVLAVYGGSDFRAQINALRRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEAD 205
Query: 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+ML +GF +D+E ILE+LP RQ + FSATMP IR L+ +YL P + +
Sbjct: 206 EMLRMGFIDDIEWILEQLPAKRQMIFFSATMPSEIRRLSKQYLHEPAEITI 256
>gi|433457741|ref|ZP_20415720.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432194443|gb|ELK51067.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 635
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 130/200 (65%), Gaps = 7/200 (3%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
++AAL G K PIQ A + ++GRD++G A+TGTGKT AF IP L ++ +
Sbjct: 35 VLAALTDVGYEKPSPIQAATIPALLEGRDVVGLAQTGTGKTAAFAIPALSRMAELPPT-- 92
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGVDAVV 226
+N LVLAPTRELA QV + F A ++ + VYGG+ Q+ L G VV
Sbjct: 93 --KNTQILVLAPTRELALQVAEAFSSYAAHMEDFTVLPVYGGSAYGPQLAGLRRGAQVVV 150
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVID I++ +L+LSE+Q+VVLDEAD+ML +GFAE+V+ IL+ P+ +Q +FSATM
Sbjct: 151 GTPGRVIDHIEKGSLDLSELQYVVLDEADEMLRMGFAEEVDRILDATPEEKQVALFSATM 210
Query: 287 PPWIRSLTNKYLKNPLTVDL 306
P IR + KYLK+P + +
Sbjct: 211 PTAIRRIAKKYLKDPAEISV 230
>gi|422396730|ref|ZP_16476761.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
Length = 564
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 135/219 (61%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 55 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 114
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A + VYGG
Sbjct: 115 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYES 173
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 174 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 233
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 234 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 272
>gi|407984605|ref|ZP_11165216.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373827|gb|EKF22832.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 560
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 128/209 (61%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L + L I ++ A+ G IQ A + P M G D++G A+TGTGKT AF IPIL
Sbjct: 13 LTFADLQIPPAVLRAVEDVGYETPSAIQAATIPPLMAGSDVVGLAQTGTGKTAAFAIPIL 72
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQM 215
KI + R LVLAPTRELA QV + F P ++ + VYGG + Q+
Sbjct: 73 SKIDTAS------RTTQALVLAPTRELALQVAEAFGRYGAHLPEVNVLPVYGGASYTPQL 126
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L G VVGTPGRVID ++R +L+LS + ++VLDEAD+ML +GFAEDVE IL P+
Sbjct: 127 AGLRRGAHIVVGTPGRVIDHLERGSLDLSRIDYLVLDEADEMLQMGFAEDVERILAETPE 186
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+Q +FSATMPP IR +T KYL +P+ V
Sbjct: 187 YKQVALFSATMPPAIRKITRKYLHDPVEV 215
>gi|418028611|ref|ZP_12667169.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
gi|354686831|gb|EHE86956.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
Length = 522
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 139/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++S+DI +A+ G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMR 216
DKI LV+APTRELA Q ++E + VYGG+ I Q++
Sbjct: 61 DKI------RTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ ++ ++LDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISQVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751456|ref|ZP_16188502.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753307|ref|ZP_16190305.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|421757037|ref|ZP_16193925.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|421758898|ref|ZP_16195737.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674217|ref|ZP_18111140.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409087570|gb|EKM87662.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|409087605|gb|EKM87695.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|409091594|gb|EKM91587.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092950|gb|EKM92911.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|417435154|gb|EKT90074.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
Length = 569
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 SQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|419421475|ref|ZP_13961703.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|379977966|gb|EIA11291.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
Length = 560
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 135/219 (61%), Gaps = 8/219 (3%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + +DI AL GI FPIQ + A++G D+IG+ARTGTGKTLAFGI IL +
Sbjct: 51 FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQR 110
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
I + E +G+ P LV+ PTRELA QV K+ +A + VYGG
Sbjct: 111 ITLPGDEGWEELTTKGK-PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYES 169
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD VVGTPGR++DL +R L+LS V+ VVLDEAD+ML +GF DVE ++ R
Sbjct: 170 QIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRT 229
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
P +RQ+M+FSATMP I +L L+ P+ V G Q
Sbjct: 230 PASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQ 268
>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
Length = 583
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 130/211 (61%), Gaps = 9/211 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L L+IS +I A+A G + PIQ + + +D+ G+A+TGTGKT AFGIP
Sbjct: 2 EKLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISH 213
+L+ I N ++L PTRELA QV +E + + P +D + VYGG PI
Sbjct: 62 LLENI------DSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRV+D I R L+L+ ++ V+LDEAD+ML +GF ED+E ILE +
Sbjct: 116 QIKALQKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDI 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
P RQ ++FSAT+P I L +Y NP V
Sbjct: 176 PYERQFLLFSATLPQEILQLAQRYQTNPEIV 206
>gi|332716889|ref|YP_004444355.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
gi|325063574|gb|ADY67264.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
Length = 615
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 4/210 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ I AL +RG L P+QKA+L P + +D + A+TG+GKT+AFGI + ++ N
Sbjct: 7 IAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALATTLLSEN 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGV 222
+ G+ PL L +APTRELA QV++E +E A CV GG I + RAL+ G
Sbjct: 67 TRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCV-GGMDIRSERRALERGA 125
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+VGTPGR+ D IKR AL+LS ++ VVLDEAD+ML +GF ED+E ILE P NR+++MF
Sbjct: 126 HIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNRRTLMF 185
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
SAT+P I L Y KN + + + Q
Sbjct: 186 SATVPRSIAKLAESYQKNAVRIATASEQKQ 215
>gi|444432231|ref|ZP_21227390.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
gi|443887060|dbj|GAC69111.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia soli NBRC
108243]
Length = 588
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 128/214 (59%), Gaps = 9/214 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D + G LD+ + A+ G PIQ A + P + GRD++G A+TGTGKT
Sbjct: 3 DTAEPSPGGSFDDLDLDPRVRQAITDVGYETPSPIQAATIPPLLDGRDVVGLAQTGTGKT 62
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YG 207
AF +PIL ++ +K P L+LAPTRELA QV + F + + + V YG
Sbjct: 63 AAFAVPILSRLDAGAKK------PQALILAPTRELALQVSEAFGRYSSHMSDVRVLPIYG 116
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G S Q+ L G +VGTPGRVID + R L++SE+ F+VLDEAD+ML++GFAEDVE
Sbjct: 117 GQSYSVQLSGLRRGAQVIVGTPGRVIDHLDRGTLDISELGFLVLDEADEMLTMGFAEDVE 176
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
IL P ++Q +FSATMPP I L KYLKNP
Sbjct: 177 RILAETPDSKQVALFSATMPPAIGRLAKKYLKNP 210
>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895, partial [Aureococcus
anophagefferens]
Length = 591
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 146/246 (59%), Gaps = 16/246 (6%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171
AL +RGI LFPIQ A G+D++ RARTGTGKTLAF +P+++K++
Sbjct: 14 ALDKRGIKVLFPIQAATFAAIFDAGKDLLARARTGTGKTLAFALPVVEKLLLDKATQ--- 70
Query: 172 RNPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPG 230
R P LVLAPTRELA+QV +F + A L T+CVYGG+ AL GVD VVGTPG
Sbjct: 71 RAPRALVLAPTRELAQQVLGDFSDVAHGRLRTLCVYGGSAYGPSCDALRRGVDVVVGTPG 130
Query: 231 RVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL------ERLPQNRQSMMFSA 284
R +DLI++ L+ S + F VLDEADQML +GF +++E I + RQ ++FSA
Sbjct: 131 RTMDLIEKGVLDASALSFAVLDEADQMLDMGFKDELEKIFAAMAPAGAPARARQLLLFSA 190
Query: 285 TMPPWIRSLTNKYLKNPLT---VDLVGDSDQKLADGIS--LYSIATSMNMQKVENALFSL 339
T+PPW+R++ Y + + +DLVG DG+ + +T ++ + V A +S+
Sbjct: 191 TLPPWVRNIAKAYAQTDASLEAIDLVGSGGGDARDGLGGIVCQASTDVSHKCVPVASWSM 250
Query: 340 KQNVMQ 345
V+
Sbjct: 251 NHKVIN 256
>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 595
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 133/209 (63%), Gaps = 12/209 (5%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+L +S++++ A+ G + PIQ + + G D G+A+TGTGKT AFG+PILDK
Sbjct: 5 FEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDK 64
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
+ RN L+L PTRELA QV +E ++ A + + +YGG PI Q+RA
Sbjct: 65 LTP-------ERNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRA 117
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L GV VVGTPGRV+D +KR L LS+ VLDEAD+ML +GF ED+E ILE+ P +
Sbjct: 118 LAKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASC 177
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP--LTV 304
Q ++FSAT+PP IR L+ ++L+ P LTV
Sbjct: 178 QRVLFSATVPPAIRELSKRFLREPEMLTV 206
>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
tularensis subsp. holarctica URFT1]
gi|422939018|ref|YP_007012165.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FSC200]
gi|423051056|ref|YP_007009490.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407294169|gb|AFT93075.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC200]
gi|421951778|gb|AFX71027.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
Length = 569
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|418410192|ref|ZP_12983502.1| cold-shock DEAD box protein [Agrobacterium tumefaciens 5A]
gi|358003751|gb|EHJ96082.1| cold-shock DEAD box protein [Agrobacterium tumefaciens 5A]
Length = 615
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 4/210 (1%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+ I AL +RG L P+QKA+L P + +D + A+TG+GKT+AFGI + ++ N
Sbjct: 7 IAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALATTLLSEN 66
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEF---HESAPSLDTICVYGGTPISHQMRALDYGV 222
+ G+ PL L +APTRELA QV++E +E A CV GG I + RAL+ G
Sbjct: 67 TRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCV-GGMDIRSERRALERGA 125
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
+VGTPGR+ D IKR AL+LS ++ VVLDEAD+ML +GF ED+E ILE P NR+++MF
Sbjct: 126 HIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNRRTLMF 185
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQ 312
SAT+P I L Y KN + + + Q
Sbjct: 186 SATVPRSIAKLAESYQKNAVRIATASEQKQ 215
>gi|50927476|gb|AAH79823.1| LOC398188 protein, partial [Xenopus laevis]
Length = 397
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 127/205 (61%), Gaps = 5/205 (2%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D SK IS+D + L +G++ LFPIQ G+D++ +ARTGTGKT +FGIP+++
Sbjct: 188 DFSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVE 247
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219
++ + + RGR P ++L PTRELA Q+ E L C YGGTP Q+ A+
Sbjct: 248 RLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKLKVACFYGGTPYQQQVFAIK 307
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE-----RLP 274
G+D +VGTPGR+ DL++ L+L+ ++ VVLDE D M +GF+E VE IL
Sbjct: 308 DGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPE 367
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLK 299
+N Q+++FSAT P W+ ++ KY++
Sbjct: 368 ENPQTLLFSATCPDWMYNVAKKYMR 392
>gi|365966468|ref|YP_004948030.1| cold-shock deAd box protein a [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745381|gb|AEW76286.1| cold-shock deAd box protein a [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 595
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 6 LGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 66 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 120 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 180 LFSATMPEPIRRITKRFMKDPQEIKI 205
>gi|343505544|ref|ZP_08743114.1| cold-shock DEAD-box protein A [Vibrio ichthyoenteri ATCC 700023]
gi|342807514|gb|EGU42702.1| cold-shock DEAD-box protein A [Vibrio ichthyoenteri ATCC 700023]
Length = 687
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 135/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNIAGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P++ Q ++FSATMPP ++++ ++L+ P+ VD+ G
Sbjct: 177 APESAQRVLFSATMPPMLKNIVERFLREPVMVDVAG 212
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 138/240 (57%), Gaps = 10/240 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
++ S G S+ ++S +V AL +GI LFP+Q E M+G D++ +ARTG+GKT
Sbjct: 37 NNGSAAVGRPFSEFNLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKT 96
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210
LAFGIPI++K+ K RGR P ++ PTRELA QV + L +YGG
Sbjct: 97 LAFGIPIVEKLNKKEGPLARGRGPAAVIFCPTRELAIQVRDVLAGVSGDLVVAALYGGVA 156
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
S Q R L GVD VV TPGR D +++ L+ V+ V LDEAD ML +GF ED+E++L
Sbjct: 157 YSTQERVLFSGVDIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLL 216
Query: 271 ERLPQN---------RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLY 321
+R+ + Q+++FSAT+P W+ + + KN +D+VG + A+ I Y
Sbjct: 217 QRVAEQNGSTPDEPKHQTLLFSATVPDWVHTCSF-ISKNKKFIDMVGQGAMRAANTIRFY 275
>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9215]
gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9215]
Length = 593
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 151/252 (59%), Gaps = 25/252 (9%)
Query: 73 SSIAWQHAQSAVDD-----YVAYDDSSKDEG--LDISKLD----------ISQDIVAALA 115
+S+ QH +S D + D+ + E L++SK D +Q I+ +L
Sbjct: 8 NSLGSQHEKSQNKDSSLLEFKNLDNKKEIESQLLEVSKGDDNENGFLDFGFNQSILNSLI 67
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175
+G PIQKA + M GRD++G+A+TGTGKT AF +P+++K+ + + N
Sbjct: 68 NKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLT-----NNKELNAK 122
Query: 176 CLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV 232
LV+ PTRELA QV + F + + T+ +YGGT +Q+ AL VD VVGTPGR+
Sbjct: 123 VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDVVVGTPGRI 182
Query: 233 IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292
+D I++ + + +VLDEAD+ML++GF ED+E I+++LP+N+Q ++FSATMP IR+
Sbjct: 183 MDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSATMPSEIRN 242
Query: 293 LTNKYLKNPLTV 304
+ KYL +P +
Sbjct: 243 IAKKYLNDPAEI 254
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 152/256 (59%), Gaps = 32/256 (12%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
+I+ +I L+ +GI+++ IQ P +GRD+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 132 EINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVEKLYKV 191
Query: 165 NEKHGRG--------------------------RNPLCLVLAPTRELAKQVEKEFHESAP 198
K GR +NP LVL PTREL+KQVE F E +
Sbjct: 192 --KMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRELSKQVENTFKEISQ 249
Query: 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256
+ + + +YGG +Q L G++ + GTPGR+ID ++R L+L ++++VLDEAD+
Sbjct: 250 FYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLSLQNIKYLVLDEADE 309
Query: 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLA 315
ML++GF D+E IL + + Q +++SAT P WI+ +++KY+KNP +D+V DS K +
Sbjct: 310 MLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVV-DSSNKTS 368
Query: 316 DGISLYSIATSMNMQK 331
I +I T ++++
Sbjct: 369 KNIKHIAIKTPYDIKE 384
>gi|398848835|ref|ZP_10605629.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398246946|gb|EJN32419.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 561
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 DVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSAT+P IRS+ ++L+ P V +
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI 210
>gi|431801411|ref|YP_007228314.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430792176|gb|AGA72371.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 559
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 DVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSAT+P IRS+ ++L+ P V +
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI 210
>gi|406577293|ref|ZP_11052907.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
gi|404460138|gb|EKA06419.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
Length = 525
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S +++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLKDIETLILDEADEMLNMGFLEDIEAIISRVPES 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K+P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKI 204
>gi|416034326|ref|ZP_11573308.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347998190|gb|EGY39128.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 600
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 11 LGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 71 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 125 GTQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 185 LFSATMPEPIRRITKRFMKDPQEIKI 210
>gi|339486432|ref|YP_004700960.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338837275|gb|AEJ12080.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida S16]
Length = 559
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 135/208 (64%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ+ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 DVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSAT+P IRS+ ++L+ P V +
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI 210
>gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769976|ref|ZP_11484591.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|444345967|ref|ZP_21153965.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|348657009|gb|EGY74606.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443542206|gb|ELT52565.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 595
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 6 LGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 66 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 120 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 180 LFSATMPEPIRRITKRFMKDPQEIKI 205
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 134/215 (62%), Gaps = 12/215 (5%)
Query: 99 LDISKLD---ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
++I+K + IS +I ++A G + PIQ + + G+D+IG+A+TGTGKT AF I
Sbjct: 1 MNITKFEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSI 60
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPIS 212
PIL+K+ N KH + +VL PTRELA QV KE + + T+ VYGG PI
Sbjct: 61 PILEKV-DPNNKHLQ-----AIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPID 114
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q++AL GV V+GTPGRVID I R L L +V+ VVLDEAD+ML +GF ED+E+IL +
Sbjct: 115 RQIKALKSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQ 174
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P RQ+ FSATMP I LT Y P + +V
Sbjct: 175 TPIERQTTFFSATMPKEILELTKLYQHEPEIIKVV 209
>gi|444337104|ref|ZP_21151128.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443547573|gb|ELT57044.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 617
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 11 LGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 71 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 125 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 185 LFSATMPEPIRRITKRFMKDPQEIKI 210
>gi|387121415|ref|YP_006287298.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|385875907|gb|AFI87466.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 595
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 6 LGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 66 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 120 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 180 LFSATMPEPIRRITKRFMKDPQEIKI 205
>gi|339494494|ref|YP_004714787.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338801866|gb|AEJ05698.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 553
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|387824224|ref|YP_005823695.1| cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
Length = 570
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 132/208 (63%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L +SQDIV + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMR 216
I + R ++P LVLAPTRELA QV ++F A P+LD C+YGG Q+R
Sbjct: 68 NI----DLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 520
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 141/228 (61%), Gaps = 7/228 (3%)
Query: 79 HAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD 138
H + A D A D + +E + +S IV ALA +GIS FPIQ L A++G D
Sbjct: 18 HNEPAADIEAAGKDLNLEEKT-FADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSD 76
Query: 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKH----GRGRNPLCLVLAPTRELAKQVEKEFH 194
+IG+A+TGTGKTL FGIP++++ I +E P L + PTRELAKQV ++
Sbjct: 77 IIGQAKTGTGKTLGFGIPMIERCIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLR 136
Query: 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252
++A S+ + VYGG Q++ L+ G + +VGTPGR+IDL+K LNL V+ VVLD
Sbjct: 137 DAAKNRSIRIVEVYGGRAYEPQIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLD 196
Query: 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
EAD+ML +GF EDVE IL P R +M+FSATMP + ++ +Y+ +
Sbjct: 197 EADEMLDLGFLEDVEKILSATPPTRHTMLFSATMPGPVIAMARRYMSH 244
>gi|415757848|ref|ZP_11481481.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416049990|ref|ZP_11576806.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|429734662|ref|ZP_19268669.1| cold-shock DEAD-box protein A [Aggregatibacter
actinomycetemcomitans Y4]
gi|347990985|gb|EGY32499.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655344|gb|EGY70803.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|429151508|gb|EKX94374.1| cold-shock DEAD-box protein A [Aggregatibacter
actinomycetemcomitans Y4]
Length = 600
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 11 LGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 71 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 125 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 185 LFSATMPEPIRRITKRFMKDPQEIKI 210
>gi|146282848|ref|YP_001173001.1| DEAD/DEAH box helicase [Pseudomonas stutzeri A1501]
gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
A1501]
Length = 553
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
Length = 634
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 136/217 (62%), Gaps = 9/217 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF
Sbjct: 2 QDSSIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFS 61
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPI 211
+P+L+K+ ++ R P +VLAPTRELA QV E ++ L + +YGG I
Sbjct: 62 LPLLNKL-NLDQ-----RKPQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASI 115
Query: 212 SHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 116 VDQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIME 175
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P+ Q ++FSATMPP ++ + +++L+ P VD+ G
Sbjct: 176 HAPETAQRVLFSATMPPMLKKIVDRFLREPEYVDVAG 212
>gi|417917647|ref|ZP_12561206.1| DEAD/DEAH box helicase [Streptococcus parasanguinis SK236]
gi|342830284|gb|EGU64623.1| DEAD/DEAH box helicase [Streptococcus parasanguinis SK236]
Length = 523
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 155/249 (62%), Gaps = 17/249 (6%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++ ++S ++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNEFNLSVALLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDVDNT------VIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSM 327
RQ+++FSATMP I+ + +++K P LT DLV ++ +G ++ M
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234
Query: 328 NMQKVENAL 336
++++ E A+
Sbjct: 235 DVEQPELAI 243
>gi|416106824|ref|ZP_11590073.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348006026|gb|EGY46492.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 609
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 6 LGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 66 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 120 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 180 LFSATMPEPIRRITKRFMKDPQEIKI 205
>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 548
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 4/210 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E ++L Q+ V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FG+P
Sbjct: 23 EAPTFAELGARQETVDALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVP 82
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+L++++ E G P LV+ PTREL QV K+ + + + + +YGG Q
Sbjct: 83 LLEQVLAPAE--GGDGTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQ 140
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP
Sbjct: 141 IEALRSGVEILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILP 200
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++RQ+M+FSATMP I +L+ ++L+ P+T+
Sbjct: 201 EDRQTMLFSATMPDPIVALSRRFLRRPVTI 230
>gi|416076365|ref|ZP_11585446.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348004969|gb|EGY45459.1| preprotein translocase subunit SecF [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
Length = 603
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 11 LGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKIDP 70
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 71 -NEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 124
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 125 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 184
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 185 LFSATMPEPIRRITKRFMKDPQEIKI 210
>gi|418202809|ref|ZP_12839238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|353867366|gb|EHE47261.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
Length = 517
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 135/203 (66%), Gaps = 8/203 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L+KI
Sbjct: 1 MSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKI---- 56
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVD 223
LV+APTRELA Q ++E S + VYGG+ I Q++AL G
Sbjct: 57 --RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAH 114
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++DLIKR AL L ++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ+++FS
Sbjct: 115 IVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFS 174
Query: 284 ATMPPWIRSLTNKYLKNPLTVDL 306
ATMP I+ + +++K P V +
Sbjct: 175 ATMPDAIKRIGVQFMKAPEHVKI 197
>gi|386021214|ref|YP_005939238.1| DEAD/DEAH box helicase [Pseudomonas stutzeri DSM 4166]
gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 556
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L I ++AA++ G + PIQ + + G DMIG+A+TGTGKT AF +PIL KI
Sbjct: 9 AALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P + + +YGG P+ Q++A+
Sbjct: 69 DPAK------REPQALILAPTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D + RN+ LS ++F+VLDEAD+ML +GF +D+EVI E +P++RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain-containing protein [Micromonospora
sp. L5]
gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
Length = 553
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 137/210 (65%), Gaps = 4/210 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L Q+ V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FGIP
Sbjct: 19 EAPTFAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIP 78
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+L+++ F G P LV+ PTREL QV K+ + + + + +YGG Q
Sbjct: 79 LLERV--FAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQ 136
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP
Sbjct: 137 IEALRKGVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLP 196
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++RQ+M+FSATMP I +L+ ++L+ P+T+
Sbjct: 197 EDRQTMLFSATMPDPIVALSRRFLRRPVTI 226
>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
ATCC 27029]
Length = 553
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 137/210 (65%), Gaps = 4/210 (1%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L Q+ V ALA GI++ F IQ+ L A++G D+IG+A TGTGKTL FGIP
Sbjct: 19 EAPTFAALGARQETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIP 78
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQ 214
+L+++ F G P LV+ PTREL QV K+ + + + + +YGG Q
Sbjct: 79 LLERV--FAPSEGSDGVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQ 136
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GV+ +VGTPGR++DL K+ L L V+ +VLDEAD+ML +GF +DVE IL LP
Sbjct: 137 IEALRKGVEILVGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLP 196
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
++RQ+M+FSATMP I +L+ ++L+ P+T+
Sbjct: 197 EDRQTMLFSATMPDPIVALSRRFLRRPVTI 226
>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase [Pelodictyon phaeoclathratiforme BU-1]
gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 599
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/211 (45%), Positives = 134/211 (63%), Gaps = 9/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D L +++ ++ ALA G PIQ + ++GRD++G+A+TGTGKT AF +PIL
Sbjct: 1 MDFLGLQLAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQM 215
I + +H P LVLAPTRELA QV + F A L + +YGG Q+
Sbjct: 61 SNI---DLEHA---EPQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQL 114
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R L GV VVGTPGRV+D ++R +LNL+ ++ +VLDEAD+ML +GF +DVE IL++ P+
Sbjct: 115 RMLRRGVHIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPK 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ +FSATMPP IR + KYL NP V +
Sbjct: 175 GRQVALFSATMPPVIRRIAQKYLHNPAEVTI 205
>gi|416056522|ref|ZP_11579867.1| LOW QUALITY PROTEIN: preprotein translocase subunit SecF
[Aggregatibacter actinomycetemcomitans serotype e str.
SCC393]
gi|348002012|gb|EGY42734.1| LOW QUALITY PROTEIN: preprotein translocase subunit SecF
[Aggregatibacter actinomycetemcomitans serotype e str.
SCC393]
Length = 418
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 9/206 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L + + I+ A++ G PIQ+ + ++GRD++G A+TG+GKT AF +PIL KI
Sbjct: 6 LGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPILAKI-D 64
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRALDY 220
NEKH P LV+APTRELA QV ++F + A ++ + +YGG Q+RAL
Sbjct: 65 PNEKH-----PQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLRALKQ 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G VVGTPGR++D I+R LNL+E++ +VLDEAD+ML +GF EDVE ++ LP++ Q+
Sbjct: 120 GAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTA 179
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDL 306
+FSATMP IR +T +++K+P + +
Sbjct: 180 LFSATMPEPIRRITKRFMKDPQEIKI 205
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFG+P
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G +VGTPGRV+D ++R + + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGTQVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P+ RQ++MFSATMP I + K+ K+P+TV ++
Sbjct: 176 PEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI 209
>gi|433448548|ref|ZP_20411442.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Weissella ceti NC36]
gi|429539771|gb|ELA07806.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Weissella ceti NC36]
Length = 528
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ S+L +++D++ A+ + G + PIQ+ + + G+D+IG+A+TGTGKT AFG+PIL
Sbjct: 1 MKFSELGLTKDLLTAIEKHGYEEATPIQEKTIPLTLDGKDVIGQAQTGTGKTAAFGLPIL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+ I + K P LV++PTRELA Q + E + + V+GG I Q+
Sbjct: 61 EMIDTTDTK------PQALVVSPTRELAIQTQDELFKLGREKRVRVQAVFGGADIRRQIN 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L +G VVGTPGR+ID I+R ++LS+V+ ++LDEAD+ML++GF +D+E IL+ +P
Sbjct: 115 GLQHGAHIVVGTPGRLIDHIRRGTIDLSQVKTLILDEADEMLNMGFLDDIEAILKAVPDQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMPP I+ + +++K+P+ V +
Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMKDPIHVQI 204
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ I+ A+ G + PIQ + + G D+IG+A+TGTGKT AFGIPIL+K+
Sbjct: 10 LQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILEKL-- 67
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYG 221
+ R R LV+ PTRELA QV +E + D T+ VYGG I Q+ AL G
Sbjct: 68 ----NPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRG 123
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGR++D I R L L ++ +VLDEAD+ML +GF +D+E I++ P+ RQ+++
Sbjct: 124 VQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLL 183
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
FSATMP I+ L KYLKNP V + D
Sbjct: 184 FSATMPHEIQQLARKYLKNPRLVAVSKDE 212
>gi|352516353|ref|YP_004885670.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348600460|dbj|BAK93506.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 505
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 144/227 (63%), Gaps = 10/227 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++SQ+++ A+ + G + PIQ + AM+G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELNLSQELLDAVTKIGFEEATPIQAETIPLAMEGKDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
DKI G+ + LV+APTRELA Q ++E + VYGG I Q+R
Sbjct: 61 DKI------DGKKKQIQGLVIAPTRELAIQTQEELFRLGKEKKIRVQAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R L LS V+ +VLDEAD+ML++GF ED+E I+ ++P+
Sbjct: 115 QLKDNPQIVVGTPGRMLDHINRRTLKLSTVETLVLDEADEMLNMGFLEDIEKIIAQVPEQ 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
RQ+++FSATMP I+S+ K++K+ V + + + AD I Y +
Sbjct: 175 RQTLLFSATMPKEIKSIGVKFMKDSHHVRI--KAKEMTADSIDQYYV 219
>gi|343510603|ref|ZP_08747826.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
gi|342801572|gb|EGU37032.1| cold-shock DEAD-box protein A [Vibrio scophthalmi LMG 19158]
Length = 679
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P+ Q ++FSATMPP ++++ ++L+ P+ VD+ G
Sbjct: 177 APETAQRVLFSATMPPMLKNIVERFLREPVMVDVAG 212
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 139/220 (63%), Gaps = 16/220 (7%)
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S + + L +RGI++LFPIQ D++G+A+TGTGKTLAF +P+++++IK +
Sbjct: 22 STETMEILKKRGINRLFPIQAKSFNYIFNKNDVLGKAKTGTGKTLAFVLPVIERLIKKGK 81
Query: 167 KHGR--GRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISHQMRALDYGV 222
H GR PL LVL PTRELA+QV EF + + +YGG+P Q++ + GV
Sbjct: 82 FHTNEIGRKPLVLVLLPTRELAQQVSNEFELMKGNNRYKVVSIYGGSPEYPQIQEVKKGV 141
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL---------ERL 273
D +VG PGRV+D I+RN LN+S++ ++LDEAD+ML +GF E V+ ++ E
Sbjct: 142 DIIVGCPGRVLDFIERNILNVSKINVLILDEADKMLEMGFKEYVDKVIDFVKKQTSEENT 201
Query: 274 PQNR--QSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDS 310
+NR Q ++FSAT+P WI+ + N+ + N +TVD+ S
Sbjct: 202 DKNRRFQILLFSATVPSWIKKIVNEIMSNDTVTVDVTNIS 241
>gi|396583986|ref|ZP_10484488.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
gi|395548411|gb|EJG15674.1| DEAD/DEAH box helicase [Actinomyces sp. ICM47]
Length = 734
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + ++I+AA+ G PIQ A + P ++ RD++G A+TGTGKT AFG+P+L
Sbjct: 54 FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLL-A 112
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
I+ +E R+ LVLAPTRELA Q + +F LD + VYGG+P Q+ A
Sbjct: 113 IVDADE-----RDVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGA 167
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGRVIDLI++ AL+LS V+ +VLDEAD+ML +GFAEDVE I P +R
Sbjct: 168 LKRGAQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASSAPDDR 227
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
+ +FSATMP I + ++LK+P+ V
Sbjct: 228 LTALFSATMPAAIEKVAREHLKDPVKV 254
>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953999|ref|ZP_12597040.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816267|gb|EGU51169.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 660
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S L ++ I++AL G PIQ A + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPIS 212
P+L+K+ R P ++LAPTRELA QV K ++ L + +YGG I
Sbjct: 63 PLLNKLDLAQ------RKPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G VVGTPGRV DLI R+ L+L EV VLDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P + Q ++FSATMPP ++S+ ++L++P T+D+ G
Sbjct: 177 APSSAQRVLFSATMPPMLKSIVERFLRDPETIDVAG 212
>gi|343514254|ref|ZP_08751334.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
gi|342800566|gb|EGU36084.1| cold-shock DEAD-box protein A [Vibrio sp. N418]
Length = 680
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 9/216 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D + S+L ++ I++AL G PIQ + + G+D +G+A+TGTGKT AF +
Sbjct: 3 DSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAFSL 62
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPIS 212
P+L+KI R P +VLAPTRELA QV E + L + +YGGT I
Sbjct: 63 PLLNKIDLAQ------RKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIV 116
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
QMRAL G +VGTPGRV DLI R+ L+L EV +LDEAD+ML++GF +DV I+E
Sbjct: 117 DQMRALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEH 176
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
P+ Q ++FSATMPP ++++ ++L+ P+ VD+ G
Sbjct: 177 APETAQRVLFSATMPPMLKNIVERFLREPVMVDVAG 212
>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 438
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 137/226 (60%), Gaps = 10/226 (4%)
Query: 94 SKDEGLDISKLDISQDIV----AALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
S D + LD+S ++ AALAR G PIQ+ ++P +QGRD+I A+TG+GK
Sbjct: 5 SGDSTMSFDHLDLSPQLLPAFTAALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGK 64
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL----DTICV 205
TLA+ +P+L + E R LVL PTRELA QVE H+ A L +
Sbjct: 65 TLAYALPLLQQRCLAPETAPRVLG--ALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTA 122
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265
GG+ I+ Q+ AL G D VV TPGR++DL+ NAL LSEV +VLDEAD++L +GF +
Sbjct: 123 TGGSSINPQLLALRGGADIVVATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAE 182
Query: 266 VEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
++ IL LP RQS++FSAT PP I SL + L++PL + +V D
Sbjct: 183 LDRILALLPAQRQSVLFSATFPPGIASLAKRRLRDPLRITIVATPD 228
>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|254371138|ref|ZP_04987140.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717740|ref|YP_005306076.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726344|ref|YP_005318530.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|385795189|ref|YP_005831595.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|421756125|ref|ZP_16193052.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|377827793|gb|AFB81041.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|377829417|gb|AFB79496.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085703|gb|EKM85836.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
Length = 569
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|400536166|ref|ZP_10799701.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
gi|400330248|gb|EJO87746.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium colombiense CECT 3035]
Length = 567
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
D S++ + L I+ ++ A+A G IQ A + M G D++G A+TGTGKT
Sbjct: 5 DSSTEAASTTFADLQINPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKT 64
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYG 207
AF IPIL KI + LVLAPTRELA QV + F P ++ + +YG
Sbjct: 65 AAFAIPILSKIDVTSTA------TQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYG 118
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
G+ S Q+ L G VVGTPGRVID ++R L+LS V ++VLDEAD+ML++GFAE+V+
Sbjct: 119 GSSYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVD 178
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
IL P+ +Q +FSATMPP IR +T KYL +PL V
Sbjct: 179 RILSETPEYKQVALFSATMPPAIRKITTKYLHDPLEV 215
>gi|357236526|ref|ZP_09123869.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
gi|356884508|gb|EHI74708.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
Length = 519
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 142/211 (67%), Gaps = 10/211 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L+++++I+ A+ + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFTELNLAENILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQM 215
+KI N N + LV+APTRELA Q ++E + VYGG+ I Q+
Sbjct: 61 NKIDTAN-------NVIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQI 113
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ +P
Sbjct: 114 KALRSGAHIVVGTPGRLLDLIKRRALKLNTVETLILDEADEMLNMGFLEDIEAIISHVPN 173
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + K++K+P V +
Sbjct: 174 ERQTLLFSATMPDAIKRIGVKFMKDPEHVKI 204
>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
Length = 569
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|70934443|ref|XP_738447.1| ATP-dependent helicase [Plasmodium chabaudi chabaudi]
gi|56514675|emb|CAH86890.1| ATP-dependent helicase, putative [Plasmodium chabaudi chabaudi]
Length = 322
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 149/252 (59%), Gaps = 27/252 (10%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
I+Q IV L +GI + IQ P QG D+IGR+ TG+GKTLAF +P+++K+ K
Sbjct: 7 INQKIVEFLETKGIKHMTKIQSKSFMPIYQGNDIIGRSETGSGKTLAFALPLVEKLYKNI 66
Query: 166 EKH--------------GRGRN---------PLCLVLAPTRELAKQVEKEFHESAP--SL 200
E G RN P LVL PTREL+KQVE F E + +
Sbjct: 67 EAKNKSNEINSINQLSDGGNRNINNDNMDKDPYILVLEPTRELSKQVETTFKEISQFYNF 126
Query: 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260
+ + +YGG ++Q L G+ + GTPGR+ID I++ L+L ++++VLDEAD+ML++
Sbjct: 127 NIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLQNIKYLVLDEADEMLNL 186
Query: 261 GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319
GF D+E IL + ++ Q +++SAT P WI+ +++KYLKNP+ +D+V ++ K + I
Sbjct: 187 GFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIFIDVV-NTVNKTSKNIQ 245
Query: 320 LYSIATSMNMQK 331
+I T ++++
Sbjct: 246 HIAIKTPYDIKE 257
>gi|441515068|ref|ZP_20996877.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
gi|441450162|dbj|GAC54838.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
Length = 589
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 129/215 (60%), Gaps = 10/215 (4%)
Query: 91 DDSSKDE-GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
D S++D G L I + AA+ G PIQ A + P M GRD++G A+TGTGK
Sbjct: 14 DTSAQDAPGGSFDDLGIEPRVRAAITDVGYETPSPIQAATIPPLMDGRDVVGLAQTGTGK 73
Query: 150 TLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVY 206
T AF IPIL ++ R P L+LAPTRELA QV + F + P + + +Y
Sbjct: 74 TAAFAIPILSRL------DTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIY 127
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG Q+ L G +VGTPGRVID + + L++S ++F+VLDEAD+ML++GFAEDV
Sbjct: 128 GGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDV 187
Query: 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
E IL P +Q +FSATMP IR L +YLK+P
Sbjct: 188 ERILAETPDTKQVALFSATMPSSIRRLAQRYLKSP 222
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 128/209 (61%), Gaps = 9/209 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L S L IS +I+ A+ G ++ IQ + ++G+D+IG+A+TGTGKT AFGIPI+
Sbjct: 5 LTFSDLGISAEILRAVEEMGYTQPSTIQSQSIPFMLEGKDVIGQAQTGTGKTAAFGIPII 64
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQM 215
D + K P L+L PTRELA QVE E + + + C+YGG I Q+
Sbjct: 65 DNVDPAINK------PQALILCPTRELAVQVEGEIVKLSKFKRGISSTCIYGGEAIDRQI 118
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
R+L GV VVGTPGR++D I R L L V+ +VLDEAD+ML +GF ED+E IL P+
Sbjct: 119 RSLKKGVQIVVGTPGRIMDHIDRGTLKLDLVRIIVLDEADEMLDMGFREDIESILGDCPE 178
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ++ FSATMP I LT KY NP V
Sbjct: 179 ERQTVFFSATMPKPILELTKKYQDNPEIV 207
>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 559
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 134/208 (64%), Gaps = 9/208 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ LD++ +IVAA+ G + IQ + + G DMIG+A+TGTGKT AF +PIL+KI
Sbjct: 9 AALDLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F A P ++ + VYGG P+ Q+RA+
Sbjct: 69 DVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAI 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G VV TPGR+ D ++R+ LS VQ++VLDEAD+ML +GF +D+EVI + +P +RQ
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++FSAT+P IRS+ ++L+ P V +
Sbjct: 183 TVLFSATLPSSIRSIAERHLREPKHVKI 210
>gi|406671543|ref|ZP_11078782.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
gi|405580793|gb|EKB54852.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
Length = 485
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 143/221 (64%), Gaps = 18/221 (8%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L++ +++ +L G + PIQ+ + A+ G+D+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFTDLNLKNELLTSLDELGFEEPTPIQQQGIPIALSGKDLIGQAQTGTGKTAAFGLPLL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMR 216
+KI N N L++APTRELA QV++E + + L T VYGG PI Q++
Sbjct: 61 NKIDPKNT------NVQALIVAPTRELAIQVQEELYRLSKVLKTNVYVVYGGAPIDKQIK 114
Query: 217 AL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L V +VGTPGR++DL+KRN L L+ VQ +VLDEAD+ML++GF ED++ I+++ P+
Sbjct: 115 RLRSQKVQVLVGTPGRLLDLLKRNVLKLNAVQTLVLDEADEMLNMGFIEDIKAIIQQAPE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP---------LTVDLV 307
RQ+++FSATMP I+ L ++L N LT DL+
Sbjct: 175 TRQTLLFSATMPKAIKELAGQFLINAEHIKIKAQYLTTDLI 215
>gi|339640657|ref|ZP_08662101.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453926|gb|EGP66541.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 517
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 138/210 (65%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L +S +++A + + G + PIQ+ + A+ G+D+IG+A+TGTGKT AFG P L
Sbjct: 1 MKFNELHLSAELLAEIEKAGFEEASPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGFPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI N L++APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKIDTTNP------TVQALIIAPTRELAVQCQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L+ V+ ++LDEAD+ML++GF ED+E I+ R+P+
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIESIISRVPEE 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKI 204
>gi|419846080|ref|ZP_14369337.1| cold-shock DEAD-box protein A [Haemophilus parainfluenzae HK2019]
gi|386414375|gb|EIJ28931.1| cold-shock DEAD-box protein A [Haemophilus parainfluenzae HK2019]
Length = 612
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + + I+ A++ G PIQ+A + ++GRD++G A+TG+GKT AF +PIL K
Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPILAK 66
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPSLDTICVYGGTPISHQMRA 217
I ++P LV+APTRELA QV + F + A ++ + +YGG Q+RA
Sbjct: 67 I------DPTAKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGGQRYDIQLRA 120
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D I+RN LNLSE++ +VLDEAD+ML +GF +DVE ++ LP+
Sbjct: 121 LKQGAQVVVGTPGRILDHIRRNTLNLSELRAIVLDEADEMLRMGFIDDVETVMAELPEEH 180
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
Q+ +FSATMP IR +T +++ NP V + ++D
Sbjct: 181 QTALFSATMPEPIRRITKRFMNNPQEVKIKVNND 214
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 152/249 (61%), Gaps = 20/249 (8%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
++ +S+ ++ +L+ G + PIQK + A++G D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 9 GEIALSKQVLQSLSEMGFEEPSPIQKEAIPLALEGVDLIGQAQTGTGKTAAFGIPIIEKV 68
Query: 162 -IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRAL 218
KF ++L+PTRELA QV +E + + + +YGG I Q+RAL
Sbjct: 69 NPKFQAVQ-------AIILSPTRELAVQVSEELAKIGKYRHVKILPIYGGQSIDRQIRAL 121
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277
+G VVGTPGR++D +KR L L V+ VVLDEAD+ML +GF ED+E IL+ + P++R
Sbjct: 122 RFGSQVVVGTPGRILDHLKRGTLKLQYVKMVVLDEADEMLDMGFVEDIEHILKEVPPEDR 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNP---------LTVDLVGDSDQKLADGISLYSIATSMN 328
Q M+FSATMP IR L Y+K+P LTV L+ + D I + ++ ++
Sbjct: 182 QVMLFSATMPLAIRKLAQHYMKDPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCRIID 241
Query: 329 MQKVENALF 337
M+ + A+
Sbjct: 242 MEDIGQAII 250
>gi|428211079|ref|YP_007084223.1| DNA/RNA helicase [Oscillatoria acuminata PCC 6304]
gi|427999460|gb|AFY80303.1| DNA/RNA helicase, superfamily II [Oscillatoria acuminata PCC 6304]
Length = 484
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 134/205 (65%), Gaps = 8/205 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S++ V L + G ++ PIQ+ + M G+D+ G+A+TGTGKT AF +PIL+++
Sbjct: 8 LGLSEERVQQLEKLGFTEPSPIQEQAIPKLMAGQDVAGQAQTGTGKTAAFSLPILEQM-D 66
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
N+K N L+LAPTRELA QV E + VYGG+ I Q++ L+ G
Sbjct: 67 VNDK-----NVQALILAPTRELAIQVSNAIRELTDDRRVRIFAVYGGSSIERQIQRLERG 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
V VVGTPGRV+DL+ R L L + +VLDEAD+MLS+GF +DVE IL R P++RQ+
Sbjct: 122 VQIVVGTPGRVLDLLNRGHLKLDTLTHLVLDEADEMLSMGFIDDVEKILARAPKDRQTAF 181
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDL 306
FSATM P IR L NK++++P+TV +
Sbjct: 182 FSATMEPSIRKLMNKFMRDPVTVKI 206
>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
Length = 604
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 34 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 93
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 94 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 149
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 150 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQ 209
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 210 CQRLLFSATIPTDIADIIEEYLRNPCKI 237
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 131/206 (63%), Gaps = 9/206 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L LDIS +I A+A G + PIQ + + GRD+IG+A+TGTGKT AFGIPIL
Sbjct: 4 LRFKDLDISSEIENAVADMGFEEATPIQSLAIPHVLDGRDVIGQAQTGTGKTAAFGIPIL 63
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQM 215
+ + + R+ ++L PTRELA QV +E + + + I V YGG PI Q+
Sbjct: 64 EMVDPGD------RSLQAVILCPTRELAIQVAEEIRKLSKYMSKIKVLPIYGGQPIERQI 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
+AL GV ++GTPGRV+D ++R L + V+ +VLDEAD+ML +GF +D+E++L +P
Sbjct: 118 KALKKGVQVIIGTPGRVMDHMRRGTLKMDSVKIMVLDEADEMLDMGFRDDIEIVLRDMPS 177
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+++FSATM I +LT KY NP
Sbjct: 178 ERQTLLFSATMSRDILNLTRKYQNNP 203
>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
Length = 569
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDIV + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 146/227 (64%), Gaps = 10/227 (4%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ +L++S +++ A+ R G + PIQ + A+ GRD+IG+A+TGTGKT AFG+P+L
Sbjct: 1 MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
+KI + H +G LV++PTRELA Q ++E + + + VYGG I Q+R
Sbjct: 61 EKI-DTSSSHLQG-----LVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIR 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L VVGTPGR++D I R+ L L V+ +VLDEAD+ML++GF ED+E I+ ++P
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPST 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
RQ+++FSATMPP I+S+ K+++NP V + + + AD I Y +
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMQNPEHVKI--KAKEMTADLIDQYYV 219
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 144/242 (59%), Gaps = 10/242 (4%)
Query: 95 KDEGLDISKLDI---SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
K +G D S L + ++ L RGI+ LFPIQ+ E G D+IG+ RTG+GKTL
Sbjct: 18 KIKGNDESNLKVFIKNKQTRKVLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTL 77
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGG 208
A+ +PIL++I K + NP LVL PTRELA QV EF+ +YGG
Sbjct: 78 AYCLPILERIRGLGLKQNK--NPYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGG 135
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
T + +Q+ + G + VVGTPGR+ DL++R L L E+Q VVLDEADQML+ GF E++E
Sbjct: 136 TDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEK 195
Query: 269 ILERLPQNR-QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATS 326
I+ + Q ++FSAT+P W++ L+ KY++ N ++L+ + + + + Y++ +
Sbjct: 196 IMSYFNDRKIQMLLFSATIPDWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCA 255
Query: 327 MN 328
N
Sbjct: 256 KN 257
>gi|385679095|ref|ZP_10053023.1| ATP-dependent RNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 538
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 141/236 (59%), Gaps = 11/236 (4%)
Query: 75 IAWQHAQSAVDD----YVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+A +H+++ V D + D + ++L + +IV ALA GI F IQ L
Sbjct: 1 MALEHSETGVPDTDTSHPLQADHVEPATPTFAELGVRPEIVRALAEAGIEHTFAIQALTL 60
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
A+ G D+IG+ARTG GKTL FG+P+L +++ + P LV+ PTREL QV
Sbjct: 61 PLALAGDDLIGQARTGMGKTLGFGVPLLQRVVSPGDG-----TPQALVVVPTRELCLQVT 115
Query: 191 KEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
++ ++ L+ T+ +YGG P Q+ AL GVD VVGTPGR++DL ++ AL L +V+
Sbjct: 116 RDLTDAGKHLNVRTLAIYGGRPYEQQISALRKGVDVVVGTPGRLLDLAEQKALVLGKVRA 175
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+VLDEAD+ML +GF D+E IL +P RQ+M+FSATMP I L +L P V
Sbjct: 176 LVLDEADEMLDLGFLPDIERILGMVPDQRQTMLFSATMPDPIIKLARTFLNRPTHV 231
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
A+ + G PIQ A + QGRD++G A+TGTGKT AF +PIL ++ + +K
Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKK----- 222
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVVGTP 229
P LVL+PTRELA QV F E A L + V YGG Q+ L G VVGTP
Sbjct: 223 -PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTP 281
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID ++R +L+LSE++++VLDEAD+ML++GF EDVE IL P+++Q+ +FSATMP
Sbjct: 282 GRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPAS 341
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
IR L+ +YL++P V + S Q+ AD I
Sbjct: 342 IRRLSKQYLEDPREVTIK--SQQRTADNI 368
>gi|403717110|ref|ZP_10942499.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
gi|403209372|dbj|GAB97182.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
Length = 479
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 142/242 (58%), Gaps = 11/242 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ + DIVAALA GI FPIQ A+ G D+IG+A+TGTGKTL FG+P+L+K
Sbjct: 35 FADFGVHPDIVAALAGAGIVHPFPIQAMTAPVALTGHDIIGQAKTGTGKTLGFGVPLLNK 94
Query: 161 II-----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISH 213
++ F GR P LV+ PTREL QV + + + +YGG
Sbjct: 95 VVAPGDESFESLPHPGR-PQALVVVPTRELCTQVTGDLKTAGKKRGIRVESIYGGRAFEP 153
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GV+ +VGTPGR+IDL K+ L LS V+ VVLDEAD+ML +GF DVE IL +
Sbjct: 154 QIEALRRGVEVIVGTPGRLIDLNKQGHLALSNVRTVVLDEADEMLDLGFLPDVEKILAQT 213
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS--DQKLADGISLYSIATSMNMQK 331
P +RQ+M+FSATMP + +L +Y+ P + V D+ D++ I + + + M K
Sbjct: 214 PASRQTMLFSATMPGAVVALARRYMTQPTHIRAVSDAGDDRQTVAAIEQF-VYRAHAMDK 272
Query: 332 VE 333
VE
Sbjct: 273 VE 274
>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 654
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 133/214 (62%), Gaps = 9/214 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 93 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 146
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 147 ALKNGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 206
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q ++FSATMPP ++ + +++L+NP +D+ G++
Sbjct: 207 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGEN 240
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 141/230 (61%), Gaps = 11/230 (4%)
Query: 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 151
+S+ D + L + ++ A+A+ G + PIQ + M+GRD++G A+TGTGKT
Sbjct: 53 NSANDNPQGFANLGLPDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTGKTA 112
Query: 152 AFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGG 208
AF +P+L +I N +H P LVLAPTRELA QV F A L + + +YGG
Sbjct: 113 AFALPVLSQI-DINARH-----PQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGG 166
Query: 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268
Q+ L G +VGTPGRVID +++ +L++S+++F+VLDEAD+ML++GF EDVE
Sbjct: 167 QAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVER 226
Query: 269 ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI 318
IL P+ +Q +FSATMP IR L+ +YL NP V + S Q+ D I
Sbjct: 227 ILADTPEEKQVALFSATMPNGIRRLSKQYLNNPAEVTV--KSQQRTNDNI 274
>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
Length = 528
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + L IS +I A+A G PIQ+ + + G+D+IG+A+TGTGKT AFGIP
Sbjct: 2 EKIKFEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISH 213
LD I N K + +VL PTRELA Q +E H+ + + VYGG PI
Sbjct: 62 ALD-TIDLNNKSLQ-----IMVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDR 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL GV ++GTPGRVID I+R L ++ +VLDEAD+ML +GF +D+E I++ +
Sbjct: 116 QIKALKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEI 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
PQNRQ+++FSATM I L+ KY N + +V
Sbjct: 176 PQNRQTILFSATMAKAIIELSKKYQNNAEFIKVV 209
>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 435
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 134/210 (63%), Gaps = 3/210 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+D L ++ ++A L +GI PIQ + AM GRD++G A+TG+GKT AFG+P++
Sbjct: 1 MDFDMLGLAPRLIAELKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMI 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMR 216
D ++K K G+ L+LAPTRELAKQ+++ + L T+ V GG I+ Q+R
Sbjct: 61 DMLLKEQGKP-EGKTARALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIR 119
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L+ GVD +V TPGR+IDL++R A+ L + +F+VLDEADQML +GF + I L
Sbjct: 120 KLERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPE 179
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+M+FSATMP + L +LKNP+ V +
Sbjct: 180 RQTMLFSATMPKLMAELAGAFLKNPMRVQV 209
>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 609
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E ++L + ++IV AL GI + F IQ+ L A+ G D+IG+ARTGTGKTL FGIP
Sbjct: 50 EAPTFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIP 109
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQ 214
+L ++I + P LV+ PTREL QV + +++ +D + +YGG P Q
Sbjct: 110 LLQRVITPGDG-----TPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQ 164
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ AL GVD VVGTPGR++DL ++ L L +V+ +VLDEAD+ML +GF D+E +L +P
Sbjct: 165 IAALRKGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVP 224
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+M+FSATMP I +L +L P V
Sbjct: 225 DERQTMLFSATMPGPIITLARTFLNQPTHV 254
>gi|343924703|ref|ZP_08764245.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
gi|343765383|dbj|GAA11171.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia alkanivorans
NBRC 16433]
Length = 595
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 125/207 (60%), Gaps = 9/207 (4%)
Query: 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
G L+I + AA+ G PIQ A + P M GRD++G A+TGTGKT AF IPI
Sbjct: 22 GDSFDDLEIESRVRAAITDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPI 81
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQ 214
L ++ R P L+LAPTRELA QV + F + P + + +YGG Q
Sbjct: 82 LSRL------DTSARTPQALILAPTRELALQVSEAFGRYSAHMPEVKVLPIYGGQSYGVQ 135
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ L G +VGTPGRVID + + L++S ++F+VLDEAD+ML++GFAEDVE IL P
Sbjct: 136 LAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLTMGFAEDVERILAETP 195
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNP 301
+Q +FSATMP IR L +YLK+P
Sbjct: 196 DTKQVALFSATMPSSIRRLAQRYLKSP 222
>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 615
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
D+G L +S ++ A+ G IQ A + +QGRD++G A+TGTGKT AF +
Sbjct: 24 DQGPTFDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFAL 83
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI---CVYGGTPIS 212
P+L + + P LVLAPTRELA QV + F A +LD + VYGG
Sbjct: 84 PVLSNLDVYQNA------PQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYG 137
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q+ AL GV VVGTPGR++D +++ L+LS+++F+VLDEAD+ML++GFAEDVE IL
Sbjct: 138 PQLTALRRGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAE 197
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKN 300
P+++Q +FSATMP IR L+ KYL++
Sbjct: 198 TPEDKQVALFSATMPAQIRRLSKKYLRD 225
>gi|389755594|ref|ZP_10191274.1| DNA/RNA helicase [Rhodanobacter sp. 115]
gi|388432201|gb|EIL89216.1| DNA/RNA helicase [Rhodanobacter sp. 115]
Length = 596
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 127/193 (65%), Gaps = 9/193 (4%)
Query: 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172
AL G PIQ A + P ++GRD++G+A+TGTGKT AF +PIL +I + K G+
Sbjct: 3 ALTDVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPILSRI---DLKPGK-- 57
Query: 173 NPLCLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
P LVLAPTRELA QV + F A P L + +YGG Q+ AL GV VVGTP
Sbjct: 58 -PQALVLAPTRELAIQVAEAFQRYAAHMPGLQVLPIYGGQSYGPQLHALRRGVQVVVGTP 116
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVID + + L+LSE++++VLDEAD+ML +GF +DVE +L+ P RQ +FSATMP
Sbjct: 117 GRVIDHLDKGTLDLSELKYLVLDEADEMLRMGFIDDVEKVLQATPPERQVALFSATMPTV 176
Query: 290 IRSLTNKYLKNPL 302
IR + K+LK+P+
Sbjct: 177 IRKIAQKHLKDPV 189
>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
Length = 555
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 134/205 (65%), Gaps = 6/205 (2%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ QDIV ALA GI+ FPIQ L A+ G+D+IG+A+TGTGKTL FGIP L + + +
Sbjct: 39 VRQDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQRAVGRD 98
Query: 166 ----EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALD 219
E+ + P L++ PTRELA QV + +A + + +YGG P Q+ L+
Sbjct: 99 DAGWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYESQIAELE 158
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
GV+ VVGTPGR+IDL +++ L+LS V+ VVLDEAD+ML +GF DVE +L +P RQ+
Sbjct: 159 KGVEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATVPAVRQT 218
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTV 304
M+FSATMP + ++ +Y+ P+ +
Sbjct: 219 MLFSATMPGPVVAMARRYMTRPMHI 243
>gi|430747243|ref|YP_007206372.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018963|gb|AGA30677.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 466
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 133/210 (63%), Gaps = 8/210 (3%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
L +S+ + AL R G + PIQ+A++ A+ GRD +G A TGTGKT AF +PIL+K+ +
Sbjct: 20 LGVSELTLKALDRAGFKEPSPIQQAMIAQAIAGRDCLGNAPTGTGKTAAFLVPILEKVDE 79
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ R L+LAPTREL Q+ +EF + + + V GG PI Q R L G
Sbjct: 80 ND------RRVQALILAPTRELVIQISREFEKLSYGRRVRGVAVVGGEPILRQQRMLGAG 133
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
VV TPGR++DL+ R+A+ L +VQ VVLDEADQML +GF VE IL+ +P+ RQ+++
Sbjct: 134 CQVVVATPGRLMDLMARHAIRLDKVQVVVLDEADQMLDIGFRPAVETILKSVPKTRQTLL 193
Query: 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
SATMPP +R L YL NP+ V L+ + +
Sbjct: 194 LSATMPPEVRDLAQTYLVNPVDVRLIREDE 223
>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
StLB037]
Length = 585
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 131/208 (62%), Gaps = 9/208 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E L + L + +++ AL G IQ A + +QGRD++G A+TGTGKT AF +P
Sbjct: 17 ETLTFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALP 76
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISH 213
+L ++ H +NP LVLAPTRELA QV + F + A + + V YGG
Sbjct: 77 VLSQM---ETGH---KNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQ 130
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+ AL GVD +VGTPGR++D + + L+LSE++F+VLDEAD+ML +GFAEDVE IL
Sbjct: 131 QLSALRRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADT 190
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNP 301
P +Q +FSATMP IR ++ +YL +P
Sbjct: 191 PSTKQVALFSATMPAQIRRISAQYLNDP 218
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 134/214 (62%), Gaps = 9/214 (4%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E + +L + + I+ A+ G + PIQ + AM+GRDMIG+A+TGTGKT AFG+P
Sbjct: 2 ETVKFDELQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLP 61
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISH 213
+L K+ + + +VL PTRELA QV +E A + + +YGG I
Sbjct: 62 LLQKV------DPKVKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVK 115
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q+R+L G +VGTPGRV+D ++R + V VVLDEAD+ML++GF ED+E IL +L
Sbjct: 116 QIRSLKDGAQVIVGTPGRVMDHMRRKTIKADHVLTVVLDEADEMLNMGFLEDMETILSQL 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
P+ RQ++MFSATMP I + K+ K+P+TV ++
Sbjct: 176 PEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI 209
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 132/198 (66%), Gaps = 8/198 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+S +++ A+++ G + PIQ A + ++Q RD+IG+A+TGTGKT AFGIP+++KI N
Sbjct: 12 LSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEKIDMNN 71
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVD 223
+ +V+APTRELA QV +E ++ S + + +YGG I Q+RAL
Sbjct: 72 DAVQ------AIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKKHPH 125
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
+VGTPGRV+D I+R L L V VVLDEAD+ML++GF ED+E IL +P RQ+++FS
Sbjct: 126 IIVGTPGRVLDHIQRRTLRLQNVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLLFS 185
Query: 284 ATMPPWIRSLTNKYLKNP 301
ATMP IR + ++++NP
Sbjct: 186 ATMPEPIRRIAERFMQNP 203
>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 560
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 131/203 (64%), Gaps = 9/203 (4%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+ L + +I+AAL G + PIQ + + G DMIG+A+TGTGKT AF +P+L KI
Sbjct: 9 AALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKI 68
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMRAL 218
R P L+LAPTRELA QV F + P ++ + VYGG P+ Q++AL
Sbjct: 69 DPAK------REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAL 122
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G +V TPGR++D ++R+ LS +Q +VLDEAD+ML +GF +D+E+I E +P++RQ
Sbjct: 123 RMGAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQ 182
Query: 279 SMMFSATMPPWIRSLTNKYLKNP 301
S++FSAT+P IR++ K+L+ P
Sbjct: 183 SVLFSATLPHSIRAIAEKHLREP 205
>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 852
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 139/236 (58%), Gaps = 16/236 (6%)
Query: 81 QSAVDDYVAYDDSSKDEG-------LDISKLDISQDIVAALARRGISKLFPIQKAVLEPA 133
+ VD + + D+ D G + + L + D++ A+ G IQK +
Sbjct: 122 EDEVDGHTPFIDTDTDSGERQQDDEITFADLGLPSDLLKAVTDMGFVSPTAIQKEAIPVL 181
Query: 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193
+ GRD++G A+TGTGKT AFG+P+LD + R LVLAPTRELA Q +
Sbjct: 182 LSGRDVVGVAQTGTGKTAAFGLPLLDAV------DSRDSVVQALVLAPTRELALQSAEAI 235
Query: 194 HESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
+ A LD + VYGG P Q+ AL G VVGTPGRVIDLI + AL L +V++ V
Sbjct: 236 TDMAARSRGLDVVAVYGGAPYGPQIGALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFV 295
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
LDEAD+ML +GFAEDVE I E LP R++ +FSATMPP I+++ ++L P+ V++
Sbjct: 296 LDEADEMLRMGFAEDVETIAESLPTERRTALFSATMPPAIQAVARQHLHEPVQVEV 351
>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 654
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 133/214 (62%), Gaps = 9/214 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +LD++ +++AL G PIQ A + + G D +G+A+TGTGKT AF +P+L+
Sbjct: 33 EFRQLDLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLN 92
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
K+ K P +V+APTRELA QV E ++ L + +YGG I QMR
Sbjct: 93 KVDLSQHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR 146
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGRV DLI R L L EV VLDEAD+ML +GF +DV I+E+ P+
Sbjct: 147 ALKNGAHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPET 206
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
Q ++FSATMPP ++ + +++L+NP +D+ G++
Sbjct: 207 AQRVLFSATMPPIVKEIVDRFLRNPARIDVAGEN 240
>gi|187931511|ref|YP_001891495.1| DEAD/DEAH box helicase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 569
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 134/208 (64%), Gaps = 7/208 (3%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
D S+L ++QDI+ + + G PIQ+ + + GRD++G+A+TGTGKT AF +P+++
Sbjct: 8 DFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLIN 67
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---ESAPSLDTICVYGGTPISHQMR 216
+ + R R P LVLAPTRELA QV ++F ++ P+LD C+YGG Q+R
Sbjct: 68 NM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIR 123
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL GV VVGT GRV+D I++ L L ++ +VLDEAD+ML +GF +DV+ +L + +
Sbjct: 124 ALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQ 183
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q ++FSAT+P I + +YL+NP +
Sbjct: 184 CQRLLFSATIPTDIADIIEEYLRNPCKI 211
>gi|126696546|ref|YP_001091432.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9301]
gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9301]
Length = 593
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 133/202 (65%), Gaps = 8/202 (3%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+Q I+ +L +G PIQKA + M GRD++G+A+TGTGKT AF +P+++K+
Sbjct: 58 FNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNK 117
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGV 222
E + + LV+ PTRELA QV + F + + T+ +YGGT +Q+ AL V
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKV 172
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VVGTPGR++D I++ + ++ +VLDEAD+ML++GF ED+E I+++LP+N+Q ++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLF 232
Query: 283 SATMPPWIRSLTNKYLKNPLTV 304
SATMP IR++ KYL +P +
Sbjct: 233 SATMPNEIRNIAKKYLNDPAEI 254
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 139/230 (60%), Gaps = 9/230 (3%)
Query: 78 QHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR 137
Q ++ + D + + +G L ++ +++ A+ + G PIQ+ + M+G
Sbjct: 97 QQEETPAEAKNTVDAAEQSDGPTFDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGN 156
Query: 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197
D++G A+TGTGKT AF +PIL +I R+P LVLAPTRELA QV + F A
Sbjct: 157 DVVGLAQTGTGKTAAFALPILARIDPSK------RHPQALVLAPTRELALQVAESFESFA 210
Query: 198 PSLDTICV---YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254
L I V YGG Q+ L G VVGTPGRVID + + +L++SE++F+VLDEA
Sbjct: 211 THLGGIHVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEA 270
Query: 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
D+ML++GF EDVE ILE P+++Q +FSATMP IR L+ +YL +P +
Sbjct: 271 DEMLNMGFQEDVERILEDTPEDKQVALFSATMPAGIRRLSKQYLNDPQEI 320
>gi|383313717|ref|YP_005374572.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
gi|380869218|gb|AFF21692.1| ATP-dependent RNA helicase rhlE [Corynebacterium pseudotuberculosis
P54B96]
Length = 442
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 130/206 (63%), Gaps = 2/206 (0%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++L ++ +IV AL+ +GI+ F IQ+ L A+ GRD+IGRARTG GKTL FG+P+LD+
Sbjct: 10 FAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDR 69
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRAL 218
+ + P LV+ PTRELA+QV ++ +A + VYGG P Q++ L
Sbjct: 70 VFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVL 129
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
GVD VVGTPGR+IDL ++ L L V +VLDEAD+ML +GF D+E +L L Q
Sbjct: 130 TAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQ 189
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTV 304
+++FSATMP + +L ++ P+ +
Sbjct: 190 TLLFSATMPGPVLTLARTFMSRPIHI 215
>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 557
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 19/303 (6%)
Query: 43 VIPRHDDIIKSRFSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSSKDEGLDIS 102
V P H+ + ++GT P I A + V D D + + + D++
Sbjct: 11 VEPSHNSTDEQTITSGT------GTPAFASGIIETAGAHAPVLDEATPDITDEGDQTDLT 64
Query: 103 K-----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPI 157
+ + +I ALA +GI+ FPIQ L A++G+D+IG+A+TGTGKTL FGIP+
Sbjct: 65 RKTFADFGVEPEICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPL 124
Query: 158 LDKIIK-----FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTP 210
L + ++E G +P LV+ PTRELAKQV +E +A ++ + VYGG
Sbjct: 125 LMDTLGPGEEGWDEDPASG-SPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRA 183
Query: 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270
Q+ L+ G + VVGTPGR+IDL+ R L+L+ V VVLDEAD+ML +GF DVE IL
Sbjct: 184 YEPQIEDLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKIL 243
Query: 271 ERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330
R +R +M+FSATMP + +L +Y+ P + D+ + + + +M
Sbjct: 244 ARTRADRHTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMN 303
Query: 331 KVE 333
KVE
Sbjct: 304 KVE 306
>gi|373488719|ref|ZP_09579383.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372005664|gb|EHP06300.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 515
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 131/210 (62%), Gaps = 11/210 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ + L S+ I+AAL RRG P+Q +P ++GRD++ ++RTG+GKTLAFG+P+L
Sbjct: 4 ITFAALGCSEPILAALERRGFHTPTPVQAECYQPGLEGRDLLVQSRTGSGKTLAFGLPLL 63
Query: 159 DKII--KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216
++ +F + L+L PTRELA+QV E P LD + GG Q++
Sbjct: 64 HRLHPDRFAQ---------ALILTPTRELAQQVAAELSSVVPQLDLAELVGGMSYGPQLK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL YG +VGTPGR +D +++ +L+LS+ VVLDE D+ML++GF EDVE IL RL
Sbjct: 115 ALKYGARVIVGTPGRTMDHLEQGSLDLSQATMVVLDECDEMLNMGFLEDVEKILSRLGNR 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+ +FSAT+P I +L ++LKNP L
Sbjct: 175 PQTYLFSATLPGPIAALAQRFLKNPHRAQL 204
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,620,693,624
Number of Sequences: 23463169
Number of extensions: 227595021
Number of successful extensions: 670093
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24305
Number of HSP's successfully gapped in prelim test: 3516
Number of HSP's that attempted gapping in prelim test: 587921
Number of HSP's gapped (non-prelim): 29711
length of query: 384
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 240
effective length of database: 8,980,499,031
effective search space: 2155319767440
effective search space used: 2155319767440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)