BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016712
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 139/209 (66%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PIQ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W + L +Y+KNP+ ++++
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVI 206
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 3/209 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
++ + +I+ AL RG++ PI+ A L A++G+D+IG+ARTGTGKTLAF +PI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218
+++ E RGR P LVL PTRELA QV E AP L + VYGGT Q AL
Sbjct: 61 ERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278
G DAVV TPGR +D +++ L+LS V+ VLDEAD+MLS+GF E+VE +L P +RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLV 307
+++FSAT+P W + L +Y+KNP+ ++++
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINVI 206
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 7/212 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLP-- 86
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 87 -AIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 145
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 146 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 205
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ++M+SAT P +R L +LK+ + +++
Sbjct: 206 PDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 7/212 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
L+ + + +++ +AR+ ++ IQ A+ G DM+G A+TG+GKTL++ +P
Sbjct: 43 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLP-- 100
Query: 159 DKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQ 214
I+ N + RG P+CLVLAPTRELA+QV++ E A L + C+YGG P Q
Sbjct: 101 -AIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 159
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+R L+ GV+ + TPGR+ID ++ NL ++VLDEAD+ML +GF + I++++
Sbjct: 160 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 219
Query: 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+RQ++M+SAT P +R L +LK+ + +++
Sbjct: 220 PDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 251
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 19/243 (7%)
Query: 90 YDDSSKDEGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
Y ++ E D KLD I +I+ A +R PIQK + ++ RD++ A+TG+
Sbjct: 16 YSATNVIENFDELKLDPTIRNNILLASYQRPT----PIQKNAIPAILEHRDIMACAQTGS 71
Query: 148 GKTLAFGIPILDKIIKFN---EKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLD 201
GKT AF IPI++ ++ + +++ + P CL+LAPTRELA Q+ E F + P L
Sbjct: 72 GKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-LR 130
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ VYGG Q+R + G +V TPGR++D I++N ++L +++VLDEAD+ML +G
Sbjct: 131 SCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG 190
Query: 262 FAEDVEVILER--LPQ--NRQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLA 315
F + I+E +P NRQ++MFSAT P I+ L +L N +TV VG + +
Sbjct: 191 FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250
Query: 316 DGI 318
I
Sbjct: 251 QEI 253
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+ SAT+P I +TNK++ +P+ + + D+ +GI + +A
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI--LVKRDELTLEGIKQFFVA 257
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 42 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 101
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 102 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 154
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 155 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 214
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+ SAT+P I +TNK++ +P+ + + D+ +GI + +A
Sbjct: 215 LISATLPHEILEMTNKFMTDPIRI--LVKRDELTLEGIKQFFVA 256
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 43 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 102
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 103 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 215
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+ SAT+P I +TNK++ +P+ + + D+ +GI + +A
Sbjct: 216 LISATLPHEILEMTNKFMTDPIRI--LVKRDELTLEGIKQFFVA 257
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F I +L + I
Sbjct: 21 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 80
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA Q++K ++ C GGT + +R LDY
Sbjct: 81 QVRETQA-------LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 133
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 134 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 193
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+ SAT+P I +TNK++ +P+ + + D+ +GI + +A
Sbjct: 194 LISATLPHEILEMTNKFMTDPIRI--LVKRDELTLEGIKQFFVA 235
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F + +L + I
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDY 220
+ E L+LAPTRELA QV+K ++ C GGT + +R LDY
Sbjct: 66 QVRETQA-------LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 118
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
G V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q +
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 178
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
+ SAT+P I +TNK++ +P+ + + D+ +GI + +A
Sbjct: 179 LISATLPHEILEMTNKFMTDPIRI--LVKRDELTLEGIKQFFVA 220
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 119/201 (59%), Gaps = 7/201 (3%)
Query: 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164
D+ I+ + + G PIQK + GRD++ A+TG+GKT AF +PIL K+++
Sbjct: 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGV 222
+ GR P ++++PTRELA Q+ E + A L VYGGT HQ + G
Sbjct: 122 PHELELGR-PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 180
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQNRQS 279
V+ TPGR++D + R + + +FVVLDEAD+ML +GF+ED+ I+ + P++ Q+
Sbjct: 181 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH-QT 239
Query: 280 MMFSATMPPWIRSLTNKYLKN 300
+MFSAT P I+ + ++LKN
Sbjct: 240 LMFSATFPEEIQRMAGEFLKN 260
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 14/225 (6%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI-I 162
+ + +D++ + G K IQ+ ++ ++GRD+I ++++GTGKT F + +L + I
Sbjct: 6 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---ICVYGGTPISHQMRALD 219
+ E L+LAPTRELA QV+K ++ C+ GGT + +R LD
Sbjct: 66 QVRETQA-------LILAPTRELAVQVQKGLLALGDYMNVQSHACI-GGTNVGEDIRKLD 117
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
YG V GTPGRV D+I+R +L ++ +VLDEAD+ML+ GF E + + LP Q
Sbjct: 118 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 280 MMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
++ SAT+P + +TNK++ +P+ + + D+ +GI + +A
Sbjct: 178 VLISATLPHEVLEMTNKFMTDPIRI--LVKRDELTLEGIKQFFVA 220
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 120/201 (59%), Gaps = 9/201 (4%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP----ILDKIIKF 164
D++ ++ R GI K PIQ +QG D+I A+TGTGKTL++ +P + + I
Sbjct: 30 DLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89
Query: 165 NEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVYGGTPISHQMRALDYGVD 223
+++G G LVL PTRELA VE E + S L +IC+YGG + Q+ + GVD
Sbjct: 90 EQRNGPG----MLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVD 145
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
++ TPGR+ DL N++NL + ++V+DEAD+ML + F + IL + +RQ++M S
Sbjct: 146 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205
Query: 284 ATMPPWIRSLTNKYLKNPLTV 304
AT P +R L YLK+P+ V
Sbjct: 206 ATWPDTVRQLALSYLKDPMIV 226
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 122/204 (59%), Gaps = 11/204 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGI 155
E + ++L++S +I+ A+ +G K IQ V+ + +++ +ARTG+GKT +F I
Sbjct: 4 EYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAI 63
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH--ESAPSLDTICVYGGTPISH 213
P+++ + NE +G ++L PTRELA QV E + +L +YGG I
Sbjct: 64 PLIELV---NENNG----IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 116
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273
Q++AL + VVGTPGR++D I R LNL V++ +LDEAD+ L+ GF +DVE IL
Sbjct: 117 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNAC 175
Query: 274 PQNRQSMMFSATMPPWIRSLTNKY 297
++++ ++FSAT P I +L KY
Sbjct: 176 NKDKRILLFSATXPREILNLAKKY 199
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 130/253 (51%), Gaps = 16/253 (6%)
Query: 91 DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
DD +G + ++++ + G K PIQ+ + A+ GRD++ RA+ GTGKT
Sbjct: 13 DDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKT 72
Query: 151 LAFGIPILDKII-KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--G 207
AF IP L+K+ K N+ L++ PTRELA Q + C+ G
Sbjct: 73 AAFVIPTLEKVKPKLNKIQA-------LIMVPTRELALQTSQVVRTLGKHCGISCMVTTG 125
Query: 208 GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
GT + + L+ V +VGTPGRV+DL R +LS+ ++DEAD+MLS F +E
Sbjct: 126 GTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIE 185
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM 327
IL LP QS++FSAT P ++ K+L P ++L+ + K GI+ Y A
Sbjct: 186 QILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLK---GITQY-YAFVE 241
Query: 328 NMQKVE--NALFS 338
QK+ N LFS
Sbjct: 242 ERQKLHCLNTLFS 254
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 134/238 (56%), Gaps = 20/238 (8%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S +++ + I+ + ++ P+QK + + RD++ A+TG+GKT AF +PIL +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 161 I-----------IKFNEKHGRGRN-PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV-Y 206
I +K N ++GR + P+ LVLAPTRELA Q+ +E + S S CV Y
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 136
Query: 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266
GG I Q+R L+ G +V TPGR++D+++R + L +++VLDEAD+ML +GF +
Sbjct: 137 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 196
Query: 267 EVILER--LPQN--RQSMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGI 318
I+E+ +P R +MMFSAT P I+ L +L L V VG + + + +
Sbjct: 197 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV 254
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 120/209 (57%), Gaps = 11/209 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +++ + ++ + G K IQ+ + P ++G D+I +A++GTGKT F I IL
Sbjct: 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 90
Query: 160 KI-IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMR 216
++ I+F E LVLAPTRELA+Q++K + C GGT + ++M+
Sbjct: 91 QLEIEFKETQA-------LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 217 ALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L VVGTPGRV D++ R L+ ++ VLDEAD+MLS GF + + I ++L
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 203
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
+ Q ++ SATMP + +T K++++P+ +
Sbjct: 204 SIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 117/203 (57%), Gaps = 9/203 (4%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+ ++++ + G K PIQ+ + A+ GRD++ RA+ GTGK+ A+ IP+L+++
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL---- 65
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGV 222
+ N +V+ PTRELA QV + + + + GGT + + LD V
Sbjct: 66 --DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTV 123
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
V+ TPGR++DLIK+ + VQ +VLDEAD++LS F + +E I+ LP+NRQ +++
Sbjct: 124 HVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLY 183
Query: 283 SATMPPWIRSLTNKYLKNPLTVD 305
SAT P ++ N +L+ P ++
Sbjct: 184 SATFPLSVQKFMNSHLEKPYEIN 206
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 119/204 (58%), Gaps = 9/204 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT F I IL +I +
Sbjct: 19 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-E 77
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYG 221
+ K + LVLAPTRELA+Q++K + C GGT + +++ L
Sbjct: 78 LDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 132
Query: 222 V-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + + I ++L N Q +
Sbjct: 133 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 192
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+ SATMP + +T K++++P+ +
Sbjct: 193 LLSATMPSDVLEVTKKFMRDPIRI 216
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 119/204 (58%), Gaps = 9/204 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++S+ ++ + G K IQ+ + P ++G D+I +A++GTGKT F I IL +I +
Sbjct: 45 MNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-E 103
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYG 221
+ K + LVLAPTRELA+Q++K + C GGT + +++ L
Sbjct: 104 LDLKATQA-----LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158
Query: 222 V-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGRV D++ R L+ ++ VLDEAD+MLS GF + + I ++L N Q +
Sbjct: 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 218
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+ SATMP + +T K++++P+ +
Sbjct: 219 LLSATMPSDVLEVTKKFMRDPIRI 242
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 122/211 (57%), Gaps = 9/211 (4%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
++E L ++ + A + G +K IQ + A+QGRD+IG A TG+GKT AF
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 155 IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPIS 212
+PIL+ +++ ++ LVL PTRELA Q+ ++F S+ + + + GG
Sbjct: 99 LPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSM 152
Query: 213 HQMRALDYGVDAVVGTPGRVID-LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271
Q AL ++ TPGR+ID L NL ++++V+DEAD++L++ F +V+ IL+
Sbjct: 153 SQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 212
Query: 272 RLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302
+P++R++ +FSATM ++ L LKNP+
Sbjct: 213 VIPRDRKTFLFSATMTKKVQKLQRAALKNPV 243
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 15/197 (7%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
+++ I A+ G +Q + +QG++++ RA+TG+GKT A+ IPIL+ +K
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVD 223
LV+ PTREL +QV + +DT VYGG P Q+ + D
Sbjct: 59 ----------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNAD 107
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283
VV TPGR++DL + ++LS + V++DEAD M +GF +D+++IL + + + +FS
Sbjct: 108 IVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFS 167
Query: 284 ATMPPWIRSLTNKYLKN 300
AT+P IR + ++ N
Sbjct: 168 ATIPEEIRKVVKDFITN 184
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 122/209 (58%), Gaps = 18/209 (8%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK-- 163
++++ + A+ G + + IQ + P ++GRD++ A+TG+GKTLAF IP ++ I+K
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQ---VEKEF---HESAPSLDTICVYGGTPISHQMRA 217
F ++G G L+L+PTRELA Q V KE H L + GG+ S + +
Sbjct: 121 FMPRNGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL----IMGGSNRSAEAQK 172
Query: 218 LDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
L G++ +V TPGR++D ++ +Q +V+DEAD++L VGF E+++ I++ LP
Sbjct: 173 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 232
Query: 277 RQSMMFSATMPPWIRSLTNKYL-KNPLTV 304
RQ+M+FSAT + L L K PL V
Sbjct: 233 RQTMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++ ++++ + G + IQ+ + P ++G D++ +A++GTGKT F I L +I
Sbjct: 27 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-- 84
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---ICVYGGTPISHQMRALDY 220
+ P L+LAPTRELA Q++K A +D C+ GGT L
Sbjct: 85 ----DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI-GGTSFVEDAEGL-R 138
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
VVGTPGRV D I+R +++ +LDEAD+MLS GF E + I LP Q +
Sbjct: 139 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 198
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333
+ SATMP + +T K+++NP V ++ D+ +GI + + K E
Sbjct: 199 LLSATMPNDVLEVTTKFMRNP--VRILVKKDELTLEGIKQFYVNVEEEEYKYE 249
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
Y+ + +E S +S+ + L + IQK + A+QG+D++G A+TG+GK
Sbjct: 16 YEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGK 75
Query: 150 TLAFGIPILDKI--IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--V 205
TLAF +P+L+ + +++ G G L+++PTRELA Q + + + D +
Sbjct: 76 TLAFLVPVLEALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGLI 131
Query: 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAE 264
GG + H+ ++ ++ +V TPGR++ + + + +++Q +VLDEAD++L +GFA+
Sbjct: 132 IGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFAD 190
Query: 265 DVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301
+ ++E LP+ RQ+++FSAT ++ L LKNP
Sbjct: 191 TMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP 227
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 11/204 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++ ++++ + G + IQ+ + P ++G D++ +A++GTGKT F I L +I
Sbjct: 19 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-- 76
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---ICVYGGTPISHQMRALDY 220
+ P L+LAPTRELA Q++K A +D C+ GGT L
Sbjct: 77 ----DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI-GGTSFVEDAEGL-R 130
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
VVGTPGRV D I+R +++ +LDEAD+MLS GF E + I LP Q +
Sbjct: 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 190
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+ SATMP + +T K+++NP+ +
Sbjct: 191 LLSATMPNDVLEVTTKFMRNPVRI 214
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+++ + ++ + G + IQ+ + P ++G D++ +A++GTGKT F I L +I
Sbjct: 26 MELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI-- 83
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT---ICVYGGTPISHQMRALDY 220
+ P L+LAPTRELA Q++K A +D C+ GGT L
Sbjct: 84 ----DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI-GGTSFVEDAEGL-R 137
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
VVGTPGRV D I+R +++ +LDEAD+MLS GF E + I LP Q +
Sbjct: 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 197
Query: 281 MFSATMPPWIRSLTNKYLKNPLTV 304
+ SATMP + +T K+++NP+ +
Sbjct: 198 LLSATMPNDVLEVTTKFMRNPVRI 221
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 18/207 (8%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ A+ K IQ+ ++ A++G +G+++TGTGKT A+ +PI +KI K
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKI-----KPE 69
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHES------APSLDTI---CVYGGTPISHQMRALDY 220
R ++ APTRELA Q+ +HE+ P I C+ GGT + L+
Sbjct: 70 RAEV-QAVITAPTRELATQI---YHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNV 125
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
V+GTPGR+ D I+ AL++ +V+DEAD L GF DV+ I R P++ Q +
Sbjct: 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXL 185
Query: 281 MFSATMPPWIRSLTNKYLKNPLTVDLV 307
+FSAT+P ++ KY +NP V ++
Sbjct: 186 VFSATIPEKLKPFLKKYXENPTFVHVL 212
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 122/265 (46%), Gaps = 25/265 (9%)
Query: 73 SSIAWQHAQSAVDDYV-AYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLE 131
+ I Q+ D V +DD DE L + + G + IQ+ +
Sbjct: 5 TDIEESQIQTNYDKVVYKFDDXELDENL-----------LRGVFGYGFEEPSAIQQRAIX 53
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
P ++G D++ +A++GTGKT F I L +I + P L LAPTRELA Q++K
Sbjct: 54 PIIEGHDVLAQAQSGTGKTGTFSIAALQRI------DTSVKAPQALXLAPTRELALQIQK 107
Query: 192 EFHESAPSLDT---ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
A D C+ GGT L VVGTPGRV D I+R +++
Sbjct: 108 VVXALAFHXDIKVHACI-GGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKX 165
Query: 249 VVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308
+LDEAD+ LS GF E + I LP Q ++ SAT P + +T K+ +NP V ++
Sbjct: 166 FILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXPNDVLEVTTKFXRNP--VRILV 223
Query: 309 DSDQKLADGISLYSIATSMNMQKVE 333
D+ +GI + + K E
Sbjct: 224 KKDELTLEGIKQFYVNVEEEEYKYE 248
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 118/217 (54%), Gaps = 10/217 (4%)
Query: 92 DSSKDEGLD-ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+S+ +E +D +++S+ ++ + G IQ+ + P + G D+I +A++GTG T
Sbjct: 7 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXT 66
Query: 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC--VYGG 208
F I IL +I + + + LVLAPTRELA+Q++ + C GG
Sbjct: 67 ATFAISILQQI-ELDLXATQA-----LVLAPTRELAQQIQXVVMALGDYMGASCHACIGG 120
Query: 209 TPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267
T + +++ L +VGTPGRV D++ R L+ + VLDEAD+MLS GF + +
Sbjct: 121 TNVRAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIY 180
Query: 268 VILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
I + L N Q ++ SATMP + +T ++++P+ +
Sbjct: 181 DIFQXLNSNTQVVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 151/280 (53%), Gaps = 27/280 (9%)
Query: 87 YVAYDDSSKDEGLD--ISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGR 142
+V +D+SK+ LD + + + ++I A+ R L P+Q+ ++P + + D+I R
Sbjct: 7 HVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIAR 66
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPS 199
A+TGTGKT AF IPI +I N K +++APTR+LA Q+E K+ H+
Sbjct: 67 AKTGTGKTFAFLIPIFQHLI--NTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG 124
Query: 200 LD---TICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSE-VQFVVLDEA 254
L + + GGT M ++ + V+ TPGR+ID++++ + V + VLDEA
Sbjct: 125 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184
Query: 255 DQMLSVGFAEDVEVILERLPQ-------NRQSMMFSATMPPWIRSLTNKYL--KNPLTVD 305
D++L +GF +D+E I L + N ++++FSAT+ ++ L N + K L +D
Sbjct: 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244
Query: 306 LVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQ 345
V ++ + + I S+ S +K N++F+ +++ +
Sbjct: 245 TVDKNEPEAHERID-QSVVIS---EKFANSIFAAVEHIKK 280
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 151/280 (53%), Gaps = 27/280 (9%)
Query: 87 YVAYDDSSKDEGLD--ISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGR 142
+V +D+SK+ LD + + + ++I A+ R L P+Q+ ++P + + D+I R
Sbjct: 58 HVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIAR 117
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPS 199
A+TGTGKT AF IPI +I N K +++APTR+LA Q+E K+ H+
Sbjct: 118 AKTGTGKTFAFLIPIFQHLI--NTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG 175
Query: 200 LD---TICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSE-VQFVVLDEA 254
L + + GGT M ++ + V+ TPGR+ID++++ + V + VLDEA
Sbjct: 176 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235
Query: 255 DQMLSVGFAEDVEVILERLPQ-------NRQSMMFSATMPPWIRSLTNKYL--KNPLTVD 305
D++L +GF +D+E I L + N ++++FSAT+ ++ L N + K L +D
Sbjct: 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 295
Query: 306 LVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQ 345
V ++ + + I S+ S +K N++F+ +++ +
Sbjct: 296 TVDKNEPEAHERID-QSVVIS---EKFANSIFAAVEHIKK 331
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 151/280 (53%), Gaps = 27/280 (9%)
Query: 87 YVAYDDSSKDEGLD--ISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGR 142
+V +D+SK+ LD + + + ++I A+ R L P+Q+ ++P + + D+I R
Sbjct: 7 HVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIAR 66
Query: 143 ARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE---KEFHESAPS 199
A+TGTGKT AF IPI +I N K +++APTR+LA Q+E K+ H+
Sbjct: 67 AKTGTGKTFAFLIPIFQHLI--NTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYG 124
Query: 200 LD---TICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSE-VQFVVLDEA 254
L + + GGT M ++ + V+ TPGR+ID++++ + V + VLDEA
Sbjct: 125 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184
Query: 255 DQMLSVGFAEDVEVILERLPQ-------NRQSMMFSATMPPWIRSLTNKYL--KNPLTVD 305
D++L +GF +D+E I L + N ++++FSAT+ ++ L N + K L +D
Sbjct: 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244
Query: 306 LVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQ 345
V ++ + + I S+ S +K N++F+ +++ +
Sbjct: 245 TVDKNEPEAHERID-QSVVIS---EKFANSIFAAVEHIKK 280
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 17/263 (6%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ A+ G +Q + A+ G D++ +A++G GKT F + L ++ +
Sbjct: 17 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 76
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGV-DA 224
LV+ TRELA Q+ KE F + P++ +GG I L
Sbjct: 77 S------VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 130
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++ L + +LNL ++ +LDEAD+ML + DV+ I P +Q MMFS
Sbjct: 131 VVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 190
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
AT+ IR + K++++P+ + V D + G+ Y + N + LF L +V
Sbjct: 191 ATLSKEIRPVCRKFMQDPMEI-FVDDETKLTLHGLQQYYVKLKDNEKN--RKLFDL-LDV 246
Query: 344 MQTAWLMLWLKVIIVSLCMGISH 366
++ +++++K V C+ ++
Sbjct: 247 LEFNQVVIFVKS--VQRCIALAQ 267
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 17/263 (6%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ A+ G +Q + A+ G D++ +A++G GKT F + L ++ +
Sbjct: 18 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 77
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGV-DA 224
LV+ TRELA Q+ KE F + P++ +GG I L
Sbjct: 78 S------VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++ L + +LNL ++ +LDE D+ML + DV+ I P +Q MMFS
Sbjct: 132 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
AT+ IR + K++++P+ + V D + G+ Y + N + LF L +V
Sbjct: 192 ATLSKEIRPVCRKFMQDPMEI-FVDDETKLTLHGLQQYYVKLKDNEKN--RKLFDL-LDV 247
Query: 344 MQTAWLMLWLKVIIVSLCMGISH 366
++ +++++K V C+ ++
Sbjct: 248 LEFNQVVIFVKS--VQRCIALAQ 268
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 17/263 (6%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ A+ G +Q + A+ G D++ +A++G GKT F + L ++ +
Sbjct: 18 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 77
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGV-DA 224
LV+ TRELA Q+ KE F + P++ +GG I L
Sbjct: 78 S------VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++ L + +LNL ++ +LDE D+ML + DV+ I P +Q MMFS
Sbjct: 132 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191
Query: 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNV 343
AT+ IR + K++++P+ + V D + G+ Y + N + LF L +V
Sbjct: 192 ATLSKEIRPVCRKFMQDPMEI-FVDDETKLTLHGLQQYYVKLKDNEKN--RKLFDL-LDV 247
Query: 344 MQTAWLMLWLKVIIVSLCMGISH 366
++ +++++K V C+ ++
Sbjct: 248 LEFNQVVIFVKS--VQRCIALAQ 268
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 11/214 (5%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIP 156
E D L +S+ ++ L G + P+Q + G D+I +A++GTGKT F
Sbjct: 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTI 81
Query: 157 ILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---SAPSLDTICVYGGTPISH 213
LD ++ N + L+LAPTRE+A Q+ L+ GGTP+S
Sbjct: 82 ALDSLVLEN------LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 135
Query: 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILER 272
L VG+PGR+ LI+ + LN ++ +LDEAD++L G F E + I
Sbjct: 136 DKTRLKK-CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS 194
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
LP ++Q + SAT P ++ + KY+++P V L
Sbjct: 195 LPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 11/201 (5%)
Query: 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168
+++ A+ G +Q + A+ G D++ +A++G GKT F + L ++
Sbjct: 24 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--- 80
Query: 169 GRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGV-DA 224
G+ + LV+ TRELA Q+ KE F + P++ +GG I L
Sbjct: 81 --GQVSV-LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 137
Query: 225 VVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFS 283
VVGTPGR++ L + +LNL ++ +LDE D+ML + DV+ I P +Q MMFS
Sbjct: 138 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 197
Query: 284 ATMPPWIRSLTNKYLKNPLTV 304
AT+ IR + K++++P+ +
Sbjct: 198 ATLSKEIRPVCRKFMQDPMEI 218
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
R+MIG++++GTGKT AF + +L ++ K P + LAP+RELA+Q+ E
Sbjct: 159 RNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAPSRELARQIMDVVTEM 212
Query: 197 APSLDTICVYG-------GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249
+ +G G I Q+ V+GTPG V+DL+KR L+ +++
Sbjct: 213 GKYTEVKTAFGIKDSVPKGAKIDAQI---------VIGTPGTVMDLMKRRQLDARDIKVF 263
Query: 250 VLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKN 300
VLDEAD ML G + I LP+N Q ++FSAT + ++ N
Sbjct: 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPN 315
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 25/179 (13%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
R+MI ++++GTGKT AF + +L ++ + +P + LAP+RELA+Q
Sbjct: 62 RNMIAQSQSGTGKTAAFSLTMLTRV------NPEDASPQAICLAPSRELARQ-------- 107
Query: 197 APSLDTICVYGG-TPISHQMRALD-------YGVDAVVGTPGRVIDLIKRNALNLSEVQF 248
+L+ + G T I+ Q+ D +VGTPG V+DL++R + L +++
Sbjct: 108 --TLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 165
Query: 249 VVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
VLDEAD ML G + + LP++ Q ++FSAT +R K + N T++L
Sbjct: 166 FVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLEL 224
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ---VEKEF 193
R+MI ++++GTGKT AF + +L ++ + +P + LAP+RELA+Q V +E
Sbjct: 45 RNMIAQSQSGTGKTAAFSLTMLTRV------NPEDASPQAICLAPSRELARQTLEVVQEM 98
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+ + V + Q+ A +VGTPG V+DL++R + L +++ VLDE
Sbjct: 99 GKFTKITSQLIVPDSFEKNKQINA-----QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153
Query: 254 ADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
AD ML G + + LP++ Q ++FSAT +R K + N T++L
Sbjct: 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLEL 207
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ---VEKEF 193
R+MI ++++GTGKT AF + +L ++ + +P + LAP+RELA+Q V +E
Sbjct: 45 RNMIAQSQSGTGKTAAFSLTMLTRV------NPEDASPQAICLAPSRELARQTLEVVQEM 98
Query: 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+ + V + Q+ A +VGTPG V+DL++R + L +++ VLDE
Sbjct: 99 GKFTKITSQLIVPDSFEKNKQINA-----QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153
Query: 254 ADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
AD ML G + + LP++ Q ++FSAT +R K + N T++L
Sbjct: 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLEL 207
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
+++I ++++GTGKT AF + +L ++ N + P CL L+PT ELA Q K +
Sbjct: 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQM 185
Query: 197 A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLD 252
P L G + R V+GTPG V+D K ++ +++ VLD
Sbjct: 186 GKFYPELKLAYAVRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242
Query: 253 EADQMLSVGFAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
EAD M++ +D + ++R LP+N Q ++FSAT + K + +P + L +
Sbjct: 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL--KRE 300
Query: 312 QKLADGISLYSIATSMNMQKVENALFSL 339
++ D I Y + S +K + AL +L
Sbjct: 301 EETLDTIKQYYVLCSSRDEKFQ-ALCNL 327
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
+++I ++++GTGKT AF + +L ++ N + P CL L+PT ELA Q K +
Sbjct: 81 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQM 134
Query: 197 A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLD 252
P L G + R V+GTPG V+D K ++ +++ VLD
Sbjct: 135 GKFYPELKLAYAVRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 191
Query: 253 EADQMLSVGFAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
EAD M++ +D + ++R LP+N Q ++FSAT + K + +P + L +
Sbjct: 192 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL--KRE 249
Query: 312 QKLADGISLYSIATSMNMQKVENALFSL 339
++ D I Y + S +K + AL +L
Sbjct: 250 EETLDTIKQYYVLCSSRDEKFQ-ALCNL 276
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
+++I ++++GTGKT AF + +L ++ N + P CL L+PT ELA Q K +
Sbjct: 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQM 118
Query: 197 A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLD 252
P L G + R V+GTPG V+D K ++ +++ VLD
Sbjct: 119 GKFYPELKLAYAVRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175
Query: 253 EADQMLSVGFAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
EAD M++ +D + ++R LP+N Q ++FSAT + K + +P + L +
Sbjct: 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL--KRE 233
Query: 312 QKLADGISLYSIATSMNMQKVENALFSL 339
++ D I Y + S +K + AL +L
Sbjct: 234 EETLDTIKQYYVLCSSRDEKFQ-ALCNL 260
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
+++I ++++GTGKT AF + +L ++ N + P CL L+PT ELA Q K +
Sbjct: 102 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQM 155
Query: 197 A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLD 252
P L G + R V+GTPG V+D K ++ +++ VLD
Sbjct: 156 GKFYPELKLAYAVRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 212
Query: 253 EADQMLSVGFAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311
EAD M++ +D + ++R LP+N Q ++FSAT + K + +P + L +
Sbjct: 213 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL--KRE 270
Query: 312 QKLADGISLYSIATSMNMQKVENALFSL 339
++ D I Y + S +K + AL +L
Sbjct: 271 EETLDTIKQYYVLCSSRDEKFQ-ALCNL 297
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 32/201 (15%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183
PIQ + + GR+++ A TG+GKTLAF IPIL ++ + K R L+++PTR
Sbjct: 54 PIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRA-----LIISPTR 108
Query: 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQM------RALDYG------VDAVVGTPGR 231
ELA Q+ +E I + GT M A +G D +V TP R
Sbjct: 109 ELASQIHREL---------IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159
Query: 232 VIDLIKRN--ALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLPQNR-QSMMFSAT 285
+I L+K++ ++L+ V+++V+DE+D++ GF + + I ++ + MFSAT
Sbjct: 160 LIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 219
Query: 286 MPPWIRSLTNKYLKNPLTVDL 306
+ L N ++V +
Sbjct: 220 FAYDVEQWCKLNLDNVISVSI 240
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
+++I ++++GTGKT AF + +L ++ N + P CL L+PT ELA Q K +
Sbjct: 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQM 185
Query: 197 A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLD 252
P L G + R V+GTPG V+D K ++ +++ VLD
Sbjct: 186 GKFYPELKLAYAVRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242
Query: 253 EADQMLSVGFAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
EAD M++ +D + ++R LP+N Q ++FSAT + K + +P + L
Sbjct: 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196
+++I ++++GTGKT AF + +L ++ N + P CL L+PT ELA Q K +
Sbjct: 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQM 118
Query: 197 A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI-KRNALNLSEVQFVVLD 252
P L G + R V+GTPG V+D K ++ +++ VLD
Sbjct: 119 GKFYPELKLAYAVRGNKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175
Query: 253 EADQMLSVGFAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
EAD M++ +D + ++R LP+N Q ++FSAT + K + +P + L
Sbjct: 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPI 157
+ + +L + + I + L RGI +P Q L+ ++G++ + T +GKTL I +
Sbjct: 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAM 60
Query: 158 LDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217
+ +I+ K + + P + LA++ +EF + + + G S
Sbjct: 61 VHRILTQGGK--------AVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWL 112
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
Y D ++ T + L++ + + +V+ +V DE + S +EVIL +
Sbjct: 113 GKY--DIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170
Query: 278 QSMMFSATM 286
Q + SAT+
Sbjct: 171 QIIGLSATI 179
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFN 165
IS V L GI +LFP Q +E G++++ T GKTL + ++ + IK
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG 69
Query: 166 EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS-HQMRALDYG-VD 223
+ L + P R LA E +ES + I + G ++ R G D
Sbjct: 70 KS---------LYVVPLRALA----GEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCD 116
Query: 224 AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM-- 281
+V T + LI+ A + V +V+DE + S +E+++ ++ + +++
Sbjct: 117 IIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVI 176
Query: 282 -FSATMP 287
SAT P
Sbjct: 177 GLSATAP 183
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPAMQGRDMIGRARTGTGKTLAFGI 155
E + I L + +++ + +RGI KL P Q +AV + ++G ++ + TG+GKTL +
Sbjct: 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEM 65
Query: 156 PILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215
I+ ++K K + + P R L + F + + + G +
Sbjct: 66 GIISFLLKNGGK--------AIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA 117
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253
+Y D ++ T ++ L + L+EV + VLDE
Sbjct: 118 WLKNY--DIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 104 LDISQDIVAALARRGISKLF--------PIQKAVLEPAMQGRD--MIGRARTGTGKTLAF 153
LD+ V+AL L+ PIQ V D +G A TG+GKT+
Sbjct: 901 LDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVG-APTGSGKTICA 959
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSLDTICVYGGTPIS 212
IL +++ +E GR C+ + P LA+QV +++E L+ V S
Sbjct: 960 EFAILRMLLQSSE--GR-----CVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1012
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED--VEVIL 270
++ L G + ++ TP + D++ R VQ + L D++ +G +EVI
Sbjct: 1013 TDLKLLGKG-NIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1070
Query: 271 ERL 273
R+
Sbjct: 1071 SRM 1073
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 104 LDISQDIVAALARRGISKLF--------PIQKAVLEPAMQGRD--MIGRARTGTGKTLAF 153
LD+ V+AL L+ PIQ V D +G A TG+GKT+
Sbjct: 901 LDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVG-APTGSGKTICA 959
Query: 154 GIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSLDTICVYGGTPIS 212
IL +++ +E GR C+ + P LA+QV +++E L+ V S
Sbjct: 960 EFAILRMLLQSSE--GR-----CVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1012
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED--VEVIL 270
++ L G + ++ TP + D++ R VQ + L D++ +G +EVI
Sbjct: 1013 TDLKLLGKG-NIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1070
Query: 271 ERL 273
R+
Sbjct: 1071 SRM 1073
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
G + P Q+ +++ + GRD + TG GK+L + IP L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
G + P Q+ +++ + GRD + TG GK+L + IP L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
Length = 574
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 34/178 (19%)
Query: 139 MIGRARTGTGK-TLAFGIPILDK-----IIKFNEKHGRGRNPL----CLVLAPTRELAKQ 188
+ GR GK T + + L+K I +EK N L C++ P L+++
Sbjct: 149 LCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEK 208
Query: 189 VEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVG---TPGRVIDLIKRNALNLSE 245
+D + P H + A+ V A +G G +D+ + L +
Sbjct: 209 ---------SHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQ 259
Query: 246 VQFVVLDEADQMLSVGFAEDVEV------ILERLPQNRQSMMFSATMPPWIRSLTNKY 297
+ F D++ + F D+ + +++R+ N MF++ P W+R N Y
Sbjct: 260 LGF------DKIFDINFGADMTIMEEATELVQRIENNGPFPMFTSCCPGWVRQAENYY 311
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLA--FGIPILDK 160
K++ +++ AR +L QK + QG + A T GKT+ + I + +
Sbjct: 21 KIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR 80
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + +P + L+ Q ++F E+ ++ + G I+ L
Sbjct: 81 NMT-----------KTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIM 129
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA----DQMLSVGFAEDVEVILERLPQN 276
+ + R DLI+ +V+FV+ DE DQ V + E ++ LPQ+
Sbjct: 130 TTEILRSMLYRGADLIR-------DVEFVIFDEVHYVNDQDRGVVWEE----VIIMLPQH 178
Query: 277 RQSMMFSATMP 287
+ ++ SAT+P
Sbjct: 179 VKFILLSATVP 189
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+L P Q V +PA++G+++I TG+GKT
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKT 62
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150
+L P Q V +PA++G+++I TG GKT
Sbjct: 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKT 36
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
PAM+G++ I A TG GKT + I + +K + +G+ P E K V
Sbjct: 23 PAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 81
Query: 192 EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVV 250
++ E + G T + + + D ++ TP +++ +K+ + +LS ++
Sbjct: 82 KYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 140
Query: 251 LDEA 254
DE
Sbjct: 141 FDEC 144
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDT 202
TG GKTL + ++ K+ K L+LAPT+ L Q + F + P
Sbjct: 32 TGLGKTLIAMMIAEYRLTKYGGK--------VLMLAPTKPLVLQHAESFRRLFNLPPEKI 83
Query: 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262
+ + G + +A +V TP + + + ++L +V +V DEA + +VG
Sbjct: 84 VALTGEKSPEERSKAWARA-KVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR--AVGN 140
Query: 263 AEDVEVILERLPQNRQSMMFSATMPP 288
V + E Q + ++ T P
Sbjct: 141 YAYVFIAREYKRQAKNPLVIGLTASP 166
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
PAM+G++ I A TG GKT + I + +K + +G+ P E K V
Sbjct: 24 PAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82
Query: 192 EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVV 250
++ E + G T + + + D ++ TP +++ +K+ + +LS ++
Sbjct: 83 KYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141
Query: 251 LDEA 254
DE
Sbjct: 142 FDEC 145
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 103 KLDISQDIVAALARRGISKLFPIQK---AVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+L+ D+ A L R +L P++K +LE Q +I R TG GKT ILD
Sbjct: 43 QLEQDHDLQAILQER---ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILD 99
Query: 160 KIIK 163
I+
Sbjct: 100 DFIQ 103
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191
PAM+G++ I A TG GKT + I + +K + +G+ P E K V
Sbjct: 15 PAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 73
Query: 192 EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVV 250
++ E + G T + + + D ++ TP +++ +K+ + +LS ++
Sbjct: 74 KYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 132
Query: 251 LDEA 254
DE
Sbjct: 133 FDEC 136
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199
TGTGKT+ + K+I E GR LVLAP + LA Q+ EF E P
Sbjct: 38 TGTGKTVT-----MAKVI---EALGRP----ALVLAPNKILAAQLAAEFRELFPE 80
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199
TGTGKT+ + K+I E GR LVLAP + LA Q+ EF E P
Sbjct: 37 TGTGKTVT-----MAKVI---EALGRP----ALVLAPNKILAAQLAAEFRELFPE 79
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRG------------ISKLFP-IQKAVL 130
+++Y D K EGL ++ + A A+ G ++KLFP +++ +L
Sbjct: 244 LEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIML 303
Query: 131 EPAMQGRD 138
+P + RD
Sbjct: 304 QPLWESRD 311
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRG------------ISKLFP-IQKAVL 130
+++Y D K EGL ++ + A A+ G ++KLFP +++ +L
Sbjct: 248 LEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIML 307
Query: 131 EPAMQGRD 138
+P + RD
Sbjct: 308 QPLWESRD 315
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRG------------ISKLFP-IQKAVL 130
+++Y D K EGL ++ + A A+ G ++KLFP +++ +L
Sbjct: 241 LEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIML 300
Query: 131 EPAMQGRD 138
+P + RD
Sbjct: 301 QPLWESRD 308
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 84 VDDYVAYDDSSKDEGLDISKLDISQDIVAALARRG------------ISKLFP-IQKAVL 130
+++Y D K EGL ++ + A A+ G ++KLFP +++ +L
Sbjct: 241 LEEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEEIML 300
Query: 131 EPAMQGRD 138
+P + RD
Sbjct: 301 QPLWESRD 308
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 38/251 (15%)
Query: 64 AISRPLDFKSSI--AWQHAQSAVDDYVAYDDSS--KDEG---LDISKLDIS-QDIVAALA 115
A+ RPL +++ +Q +A A DS KDEG +D + D+ +++
Sbjct: 293 ALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYP 352
Query: 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK-TLAFGIPILDKIIKFNEKH--GRGR 172
R + L I + PA + ++GR +G+GK T+A ++ + +E H G
Sbjct: 353 GREVPALRNINLKI--PAGKTVALVGR--SGSGKSTIA---SLITRFYDIDEGHILMDGH 405
Query: 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP------------ISHQM---RA 217
+ LA R V + H ++ Y T +++ M
Sbjct: 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINK 465
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQF-----VVLDEADQMLSVGFAEDVEVILER 272
+D G+D ++G G ++ +R + ++ ++LDEA L ++ L+
Sbjct: 466 MDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525
Query: 273 LPQNRQSMMFS 283
L +NR S++ +
Sbjct: 526 LQKNRTSLVIA 536
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQF-----VVLDEADQMLSVGFAEDVEVILER 272
+D G+D V+G G ++ +R + ++ ++LDEA L ++ L+
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525
Query: 273 LPQNRQSMMFS 283
L +NR S++ +
Sbjct: 526 LQKNRTSLVIA 536
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 49 DIIKSRFSAGTREFHA--ISRPLDFKSS-IAWQHAQSAVDDYVAYDDSSKDEGL---DIS 102
D + +S G +H+ I + +S I W A+SA++ V D+S+ G+ D S
Sbjct: 462 DAVNVIYSGGELRYHSEGIEEARELGASMIHWVPAESALEAEVIMPDASRVRGVIEADAS 521
Query: 103 KLDISQDIVAALARRGISKL 122
+L++ D V L R G ++L
Sbjct: 522 ELEV--DDVVQLERFGFARL 539
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,441,064
Number of Sequences: 62578
Number of extensions: 416215
Number of successful extensions: 1272
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 86
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)