BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016712
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 257/334 (76%), Gaps = 18/334 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKSGPVIPRHDDI-------IKSR 54
M + +L+RS SKR L+A+LTS+ T+L +LA P R D+ +K+
Sbjct: 1 MITTVLRRSL-LDASKRNLSASLTSINTVLFHNLA-----PAATRVSDLALIGSSDVKAG 54
Query: 55 FSAG--TREFHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEGLDISKLDISQD 109
F G + H S PLDF++S+ Q + + V +S +GL IS+L IS +
Sbjct: 55 FPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPE 114
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
IV AL+ +GI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKIIK+N KHG
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTP 229
RGRNPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR LDYGVD VGTP
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTP 234
Query: 230 GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289
GRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQSMMFSATMP W
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 290 IRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
IRSLT KYL NPLTVDLVGDSDQKLADGI+ YSI
Sbjct: 295 IRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/342 (63%), Positives = 252/342 (73%), Gaps = 20/342 (5%)
Query: 2 MSSIILKRSSSFLTSKRALTAALTSVETILHSHLAAAKS-------GPVIPRHDDIIKSR 54
M S +L+RS TS+R L A++TS+ L +LA A + G + S
Sbjct: 1 MISTVLRRSI-LGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSSP 59
Query: 55 FSAGTREFHAISRPLDFKSSIAWQHAQSAVDDYVAYDDSS------------KDEGLDIS 102
F R+FH S P +F+SSI +A + +Y++ +GL I+
Sbjct: 60 FGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAIA 119
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
L IS +IV AL RGI KLFPIQKAVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGV 222
KFN KHGRG+NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI QMR L+YG+
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
Query: 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282
D VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP RQSMMF
Sbjct: 240 DVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMF 299
Query: 283 SATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA 324
SATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI++YSIA
Sbjct: 300 SATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIA 341
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/315 (61%), Positives = 236/315 (74%), Gaps = 26/315 (8%)
Query: 29 TILHSHLAAAKSGPVIPRHDDIIKSRFSAGT-----------------REFHAISRPLDF 71
++L L AA S P PR ++ + S R FH PL F
Sbjct: 3 SLLSRALCAASSSPAAPRGRSLLAALLSPSASPLDPCRGPAAPEPPRRRAFHGSPSPLGF 62
Query: 72 KSSIA-WQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
+S+ A W ++ V DD GL++++L IS IV LA RGI++LFPIQ+AVL
Sbjct: 63 RSTPASWSSPEAGA--AVGGDD-----GLEVARLGISPWIVERLAARGITRLFPIQRAVL 115
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190
+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ NEK+G GRNPL ++LAPTRELA+QVE
Sbjct: 116 DPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVE 175
Query: 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250
KEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R LNLSE+QFVV
Sbjct: 176 KEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVV 234
Query: 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS 310
LDEADQML+VGF EDVEVI+E LPQNRQSM+FSATMP WIR +T+KYLK+P+ +DLVGD
Sbjct: 235 LDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDE 294
Query: 311 DQKLADGISLYSIAT 325
DQKL +GISLYSIA+
Sbjct: 295 DQKLPEGISLYSIAS 309
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 220/279 (78%), Gaps = 16/279 (5%)
Query: 62 FHAISRPLDFKSSIAWQHA---QSAVDDYVAYDDSSKDEG------------LDISKLDI 106
FH+ L F+ + A A Q A D+ + Y++ + L+++KL I
Sbjct: 46 FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105
Query: 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNE 166
S IV+ LA RGI+KLFPIQ+AVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ NE
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165
Query: 167 KHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVV 226
K+ G+ PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 224
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P RQ++MFSATM
Sbjct: 225 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 284
Query: 287 PPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIAT 325
P WI+ LT KYLKNP+T+DLVG+ DQKLA+GISLYSIA+
Sbjct: 285 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIAS 323
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis
thaliana GN=RH3 PE=1 SV=2
Length = 748
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/266 (56%), Positives = 188/266 (70%), Gaps = 4/266 (1%)
Query: 71 FKSSIAWQHAQSAVDDYVAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVL 130
FKS H + +D ++ E L ISKL + Q + +L +RGI+ LFPIQ+AVL
Sbjct: 74 FKSLGLSDHDEYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133
Query: 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK----FNEKHGRGRNPLCLVLAPTRELA 186
PA+QGRD+I RA+TGTGKTLAFGIPI+ ++ + + GR P LVLAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246
KQVEKE ESAP L T+CVYGG + Q AL GVD VVGTPGR+IDLI+ +L L EV
Sbjct: 194 KQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEV 253
Query: 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
+++VLDEADQML+VGF E VE ILE LP RQSM+FSATMP W++ L KYL NPL +DL
Sbjct: 254 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Query: 307 VGDSDQKLADGISLYSIATSMNMQKV 332
VGD D+KLA+GI LY+IAT+ ++
Sbjct: 314 VGDQDEKLAEGIKLYAIATTSTSKRT 339
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 294 bits (753), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 142/231 (61%), Positives = 182/231 (78%), Gaps = 3/231 (1%)
Query: 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFG 154
+DE L I++L + + +V+ L +RGI+ LFPIQ+AVL PA+ GRD+I RA+TGTGKTLAFG
Sbjct: 101 EDE-LAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFG 159
Query: 155 IPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212
IP++ ++++ ++ RGR P LVLAPTRELAKQVEKE ESAP L T+CVYGG +
Sbjct: 160 IPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYN 219
Query: 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272
Q AL GVD VVGTPGR+IDLI +L L EV+++VLDEADQML+VGF EDVE IL++
Sbjct: 220 VQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQ 279
Query: 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
LP RQSM+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I
Sbjct: 280 LPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAI 330
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana
GN=RH7 PE=1 SV=2
Length = 671
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 9/240 (3%)
Query: 88 VAYDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGT 147
+ +D D +SK IS + L GI LFPIQ + + + G D++GRARTG
Sbjct: 85 LGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQ 144
Query: 148 GKTLAFGIPILDKII----KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL--D 201
GKTLAF +PIL+ ++ K K G GR+P LVL PTRELAKQV +F SL
Sbjct: 145 GKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLS 204
Query: 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261
+ C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +G
Sbjct: 205 SCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMG 264
Query: 262 FAEDVEVILERLPQNR--QSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGI 318
F EDVE+IL ++ + Q+++FSAT+P W+++++N++LK + T+DLVG+ K ++ +
Sbjct: 265 FVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSV 324
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp.
japonica GN=Os09g0520700 PE=2 SV=1
Length = 696
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
++ IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PIL+
Sbjct: 117 LANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILES 176
Query: 161 IIKFNEKHGR----GRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K R GR P LVL PTRELAKQV +F + + L CVYGG+ Q
Sbjct: 177 LVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQ 236
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++
Sbjct: 237 EMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVE 296
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATSMN 328
Q+++FSAT+P W++ L+ ++LK+ TVDLVG D+KL S+ +A N
Sbjct: 297 DVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVG--DEKLKASASVRHLALPCN 351
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 191 bits (485), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRN 258
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 259 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 318
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 319 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 367
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 191 bits (485), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 6/229 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ P +G+D+I +ARTGTGKT +F IP++++
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + E + R+P LVLAPTRELA QV K+F + L C YGGT Q+ +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRN 255
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQ 275
G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+
Sbjct: 256 GIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSED 315
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLADGISLYSI 323
N Q+++FSAT P W+ + KY+K+ VDLVG QK A + +I
Sbjct: 316 NPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAI 364
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ + L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ + RGR P LVLAPTRELA QV K+F + L C YGGTP Q +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRN 307
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 308 GIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 368 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTA 408
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 303
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 304 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 363
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 364 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 404
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 138/221 (62%), Gaps = 6/221 (2%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
S IS++ V L RG++ LFPIQ G+D+I +ARTGTGKT +F IP+++K
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY 220
+ ++ RGR P LVLAPTRELA QV K+F + L C YGGTP Q+ +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRS 379
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQ 275
G+D +VGTPGR+ D ++ L+L++++ VVLDE DQML +GFA+ VE IL +
Sbjct: 380 GIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSED 439
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLT-VDLVGDSDQKLA 315
N Q+++FSAT P W+ ++ KY+K+ VDL+G QK A
Sbjct: 440 NPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAA 480
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7
PE=2 SV=1
Length = 685
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 145/232 (62%), Gaps = 11/232 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+S IS+ + L +GI LFPIQ + + G D++GRARTG GKTLAF +PI++
Sbjct: 109 LSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVES 168
Query: 161 IIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQ 214
++ K G GR P LVL PTRELA QV +F + A L VYGG P Q
Sbjct: 169 LVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQ 228
Query: 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274
+ +L GVD VVGTPGRV DL+++ L L + F VLDEAD+ML +GF +DVE+IL ++
Sbjct: 229 ISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVD 288
Query: 275 Q--NRQSMMFSATMPPWIRSLTNKYLKNP-LTVDLVGDSDQKLADGISLYSI 323
Q+++FSAT+P W++ ++ ++LK+ TVDLV SDQK+ IS+ I
Sbjct: 289 HVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLV--SDQKMKASISVRHI 338
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>sp|P0A4D7|EXP9_STRPN Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=exp9 PE=3 SV=1
Length = 524
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ ++L++S D++A + + G + PIQ+ + A++G+D+IG+A+TGTGKT AFG+P L
Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60
Query: 159 DKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMR 216
+KI LV+APTRELA Q ++E S + VYGG+ I Q++
Sbjct: 61 EKI------RTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276
AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+N
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSATMP I+ + +++K P V +
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKI 204
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 132/202 (65%), Gaps = 8/202 (3%)
Query: 102 SKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 161
+L +SQ+++ A+ R G + PIQ + ++Q +D+IG+A+TGTGKT AFGIPI++K+
Sbjct: 5 QELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 162 IKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALD 219
N K+ + LV+APTRELA QV +E ++ + + + +YGG I Q+RAL
Sbjct: 65 ---NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279
+VGTPGR+ID I R L L V VVLDEAD+ML++GF ED+E IL +P RQ+
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 280 MMFSATMPPWIRSLTNKYLKNP 301
++FSATMP IR + +++ P
Sbjct: 179 LLFSATMPDPIRRIAERFMNEP 200
>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana
GN=RH5 PE=1 SV=1
Length = 537
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 126/199 (63%), Gaps = 11/199 (5%)
Query: 124 PIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR---NPLCLVLA 180
PIQ + GRD+IG A+TG+GKTLAFGIP + ++K N+K G G NP CLVL+
Sbjct: 139 PIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLS 198
Query: 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR 238
PTRELA Q+ E+ L +ICVYGG+ Q+ A+ GVD V+GTPGR+ DLI+
Sbjct: 199 PTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIES 258
Query: 239 NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298
N L LS+V FVVLDEAD+ML +GF E V IL + RQ +MFSAT P + L +++
Sbjct: 259 NVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318
Query: 299 K-NPL-----TVDLVGDSD 311
NP+ +VDL + D
Sbjct: 319 DPNPIKVIIGSVDLAANHD 337
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12)
GN=rhlE PE=1 SV=3
Length = 454
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 136/211 (64%), Gaps = 4/211 (1%)
Query: 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPIL 158
+ L +S DI+ A+A +G + PIQ+ + ++GRD++ A+TGTGKT F +P+L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 159 DKIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQM 215
+I + H +GR P+ L+L PTRELA Q+ + + + L+ ++ V+GG I+ QM
Sbjct: 61 QHLIT-RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119
Query: 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275
L GVD +V TPGR++DL +NA+ L +V+ +VLDEAD+ML +GF D+ +L +LP
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
RQ+++FSAT I++L K L NPL +++
Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEV 210
>sp|P44586|DEAD_HAEIN Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=deaD PE=3
SV=1
Length = 613
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + + I+ A++ G PIQ++ + + G D++G A+TG+GKT AF +P+L +
Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRA 217
I +EKH P LV+APTRELA QV F + A + +YGG Q+RA
Sbjct: 67 IDP-SEKH-----PQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRA 120
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D I+R LNLSE++F+VLDEAD+ML +GF +DVE ++ LP+N
Sbjct: 121 LKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENH 180
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDL 306
Q+ +FSATMP IR +T +++ +P V +
Sbjct: 181 QTALFSATMPEPIRRITKRFMNDPQEVKI 209
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 139/208 (66%), Gaps = 10/208 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + L G ++ PIQK + A++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRA 217
K+ ++ G L+LAPTRELA QV + A ++ + V+GG PI Q++A
Sbjct: 63 KVA---DQEG----VQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QN 276
L G VVGTPGRVID + R L +++ ++LDEAD+M+++GF +D++ I++++P +
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+M+FSATMP I++L +++K+P+ V
Sbjct: 176 RQTMLFSATMPKAIQTLVQQFMKSPVIV 203
>sp|Q4L7W0|Y956_STAHJ Probable DEAD-box ATP-dependent RNA helicase SH0956
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH0956 PE=3 SV=1
Length = 503
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 137/209 (65%), Gaps = 12/209 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + ++G+D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G++ + L+LAPTRELA QV ++ E ++ + V+GG PI Q++
Sbjct: 63 KVV--------GQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTV 304
RQ+M+FSATMP I++L +++K+P V
Sbjct: 175 QRQTMLFSATMPKAIQTLVQQFMKSPQIV 203
>sp|Q11039|DEAD_MYCTU Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis
GN=deaD PE=3 SV=1
Length = 563
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 136/239 (56%), Gaps = 11/239 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L I ++ A+ G IQ A + M G D++G A+TGTGKT AF IP+L K
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRA 217
I + + P LVL PTRELA QV + F L+ + +YGG+ + Q+
Sbjct: 75 IDITS------KVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR+ID ++R L+LS V F+VLDEAD+ML++GFA+DVE IL P+ +
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336
Q +FSATMPP IR L+ KYL +P V + +A+ IS I + M + L
Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAENISQSYIQVARKMDALTRVL 245
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
+FSATMP IR + +++ P
Sbjct: 180 LFSATMPDPIRRIAERFMTEP 200
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
+FSATMP IR + +++ P
Sbjct: 180 LFSATMPDPIRRIAERFMTEP 200
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
+FSATMP IR + +++ P
Sbjct: 180 LFSATMPDPIRRIAERFMTEP 200
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ- 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 115 ALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAV 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 175 QRQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
+FSATMP IR + +++ P
Sbjct: 180 LFSATMPDPIRRIAERFMTEP 200
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
+FSATMP IR + +++ P
Sbjct: 180 LFSATMPDPIRRIAERFMTEP 200
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKII 162
+L +S ++ ++ G + PIQ + A+QG+D+IG+A+TGTGKT AFG+P+LDK+
Sbjct: 6 ELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD 65
Query: 163 KFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDY 220
E + +V+APTRELA QV +E ++ + + +YGG I+ Q+RAL
Sbjct: 66 THKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280
+VGTPGR++D I R L L V+ VVLDEAD+ML++GF ED+E IL +P+ Q++
Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179
Query: 281 MFSATMPPWIRSLTNKYLKNP 301
+FSATMP IR + +++ P
Sbjct: 180 LFSATMPDPIRRIAERFMTEP 200
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 129/200 (64%), Gaps = 9/200 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ +L++ G K PIQ A + ++GRD++G A+TG+GKT AF +P+L + N K
Sbjct: 17 IIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL-NINLKA- 74
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVV 226
P LVLAPTRELA QV + F + + + I V YGG Q+RAL G VV
Sbjct: 75 ----PQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVV 130
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+ Q+ +FSATM
Sbjct: 131 GTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTALFSATM 190
Query: 287 PPWIRSLTNKYLKNPLTVDL 306
P IR ++ +++KNP + +
Sbjct: 191 PEAIRRISKRFMKNPQEIKI 210
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 133/205 (64%), Gaps = 10/205 (4%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS + V +L G + PIQK + A+QG D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRA 217
K++ K G L+LAPTRELA QV ++ E + + V+GG PI Q++A
Sbjct: 63 KVV---WKQG----VQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKA 115
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-N 276
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P
Sbjct: 116 LKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQ 175
Query: 277 RQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I++L +++K+P
Sbjct: 176 RQTMLFSATMPKAIQALVQQFMKSP 200
>sp|Q5HME0|Y1688_STAEQ Probable DEAD-box ATP-dependent RNA helicase SERP1688
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP1688 PE=3 SV=1
Length = 509
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 131/206 (63%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
AL G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 ALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I+ L +++K P
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAP 200
>sp|P33906|DEAD_KLEPN Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3
SV=3
Length = 643
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L+
Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
I R P LVLAPTRELA QV + EF + ++ + +YGG Q+RA
Sbjct: 68 I------DPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+ +FSATMP IR +T +++K P V
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEV 208
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 156/270 (57%), Gaps = 21/270 (7%)
Query: 97 EGLDISK-------LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGK 149
EG DI K + ++ + + G ++ PIQ AM+GRD+IG A TG+GK
Sbjct: 90 EGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149
Query: 150 TLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTI 203
TL++ +P I+ N + HG G P+ LVLAPTRELA Q+++E + S+ + T
Sbjct: 150 TLSYLLPA---IVHVNAQPMLAHGDG--PIVLVLAPTRELAVQIQQEASKFGSSSKIKTT 204
Query: 204 CVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263
C+YGG P Q+R L GV+ V+ TPGR+ID+++ N NL V ++VLDEAD+ML +GF
Sbjct: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD 264
Query: 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323
+ I+ + +RQ++ +SAT P + L+ K+L NP V ++G SD K I I
Sbjct: 265 PQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKV-IIGSSDLKANRAIR--QI 321
Query: 324 ATSMNMQKVENALFSLKQNVMQTAWLMLWL 353
++ + N L L +++M + ++++L
Sbjct: 322 VDVISESQKYNKLVKLLEDIMDGSRILVFL 351
>sp|Q8CRP6|Y1679_STAES Probable DEAD-box ATP-dependent RNA helicase SE_1679
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_1679 PE=3 SV=1
Length = 509
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 130/206 (63%), Gaps = 12/206 (5%)
Query: 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILD 159
+ +L IS V L G + PIQK + A++G D++G+A+TGTGKT AFGIP+++
Sbjct: 3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIE 62
Query: 160 KIIKFNEKHGRGRNPL-CLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMR 216
K++ G+ + L+LAPTRELA QV ++ E + + V+GG PI Q++
Sbjct: 63 KVV--------GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIK 114
Query: 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-Q 275
L G VVGTPGRVID + R L + ++LDEAD+M+++GF +D+ I++++P +
Sbjct: 115 VLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAE 174
Query: 276 NRQSMMFSATMPPWIRSLTNKYLKNP 301
RQ+M+FSATMP I+ L +++K P
Sbjct: 175 QRQTMLFSATMPKAIQELVQQFMKAP 200
>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1
Length = 487
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 122/200 (61%), Gaps = 8/200 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
+S D+ A+ R G + PIQ + + +D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 8 FQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ N +V+APTRELA QV +E ++ + +YGG I Q+RAL
Sbjct: 66 ----NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKN 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
+VGTPGR++D I R + L V VVLDEAD+ML++GF ED+E IL +P Q+++
Sbjct: 122 PHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLL 181
Query: 282 FSATMPPWIRSLTNKYLKNP 301
FSATMP I+ + +++ NP
Sbjct: 182 FSATMPAPIKRIAERFMTNP 201
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 127/200 (63%), Gaps = 9/200 (4%)
Query: 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169
I+ +L G K PIQ + + ++GRD++G A+TG+GKT AF +P+L + N K
Sbjct: 17 IIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL-NINLKA- 74
Query: 170 RGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV---YGGTPISHQMRALDYGVDAVV 226
P LVLAPTRELA QV + F + + + I V YGG Q+RAL G VV
Sbjct: 75 ----PQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVV 130
Query: 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286
GTPGR++D +KR LNLS + +VLDEAD+ML +GF EDVE I+ ++P+ Q+ +FSATM
Sbjct: 131 GTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTALFSATM 190
Query: 287 PPWIRSLTNKYLKNPLTVDL 306
P IR ++ ++++NP + +
Sbjct: 191 PEAIRRISKRFMRNPKEIKI 210
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus subtilis
(strain 168) GN=cshA PE=1 SV=2
Length = 494
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 125/200 (62%), Gaps = 8/200 (4%)
Query: 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163
++S D++ A+ R G + PIQ + + +D+IG+A+TGTGKT AFGIP+++KI
Sbjct: 8 FNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI-- 65
Query: 164 FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYG 221
+ N +V+APTRELA QV +E ++ + +YGG I Q+RAL
Sbjct: 66 ----NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121
Query: 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281
+ +VGTPGR++D I R + L+ V VV+DEAD+ML++GF +D+E IL +P Q+++
Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181
Query: 282 FSATMPPWIRSLTNKYLKNP 301
FSATMP I+ + +++ P
Sbjct: 182 FSATMPAPIKRIAERFMTEP 201
>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3
SV=2
Length = 629
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+ +FSATMP IR +T +++K P V
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEV 208
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia coli (strain K12)
GN=deaD PE=1 SV=2
Length = 629
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+ +FSATMP IR +T +++K P V
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEV 208
>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deaD PE=3 SV=2
Length = 629
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+ +FSATMP IR +T +++K P V
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEV 208
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD
PE=3 SV=3
Length = 629
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 9/207 (4%)
Query: 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK 160
+ L + I+ AL G K PIQ + + GRD++G A+TG+GKT AF +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 161 IIKFNEKHGRGRNPLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRA 217
+ + P LVLAPTRELA QV + +F + ++ + +YGG Q+RA
Sbjct: 68 L------DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277
L G VVGTPGR++D +KR L+LS++ +VLDEAD+ML +GF EDVE I+ ++P+
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 278 QSMMFSATMPPWIRSLTNKYLKNPLTV 304
Q+ +FSATMP IR +T +++K P V
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEV 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,908,027
Number of Sequences: 539616
Number of extensions: 5480806
Number of successful extensions: 19046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 14742
Number of HSP's gapped (non-prelim): 1392
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)