Query 016712
Match_columns 384
No_of_seqs 395 out of 3058
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.1E-50 2.3E-55 393.8 25.2 284 100-384 92-395 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 5.1E-49 1.1E-53 361.1 22.8 305 71-384 27-354 (476)
3 COG0513 SrmB Superfamily II DN 100.0 2.9E-47 6.2E-52 382.5 32.3 282 99-384 29-327 (513)
4 KOG0328 Predicted ATP-dependen 100.0 1.9E-46 4.2E-51 331.0 17.3 281 96-384 24-320 (400)
5 PTZ00110 helicase; Provisional 100.0 3.6E-44 7.8E-49 363.1 35.3 288 94-384 125-431 (545)
6 KOG0338 ATP-dependent RNA heli 100.0 4.2E-46 9E-51 351.6 17.9 281 99-384 181-480 (691)
7 PRK11776 ATP-dependent RNA hel 100.0 9.6E-44 2.1E-48 355.3 32.4 276 99-384 4-296 (460)
8 PRK04837 ATP-dependent RNA hel 100.0 2E-43 4.3E-48 349.4 33.4 285 97-384 6-309 (423)
9 PRK10590 ATP-dependent RNA hel 100.0 1.9E-43 4.2E-48 352.2 32.7 282 100-384 2-299 (456)
10 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-42 4.6E-47 349.0 36.4 287 94-384 116-422 (518)
11 PRK11634 ATP-dependent RNA hel 100.0 7.7E-43 1.7E-47 356.9 33.3 278 98-384 5-299 (629)
12 KOG0336 ATP-dependent RNA heli 100.0 2.5E-44 5.5E-49 331.7 19.3 334 49-384 163-519 (629)
13 PRK04537 ATP-dependent RNA hel 100.0 1.7E-42 3.7E-47 352.2 33.0 283 99-384 9-311 (572)
14 PRK11192 ATP-dependent RNA hel 100.0 3.8E-42 8.2E-47 341.5 33.2 281 100-384 2-299 (434)
15 KOG0339 ATP-dependent RNA heli 100.0 3E-43 6.4E-48 332.0 23.5 288 94-384 218-522 (731)
16 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-43 3.6E-48 336.7 20.5 287 90-380 60-365 (758)
17 KOG0346 RNA helicase [RNA proc 100.0 1E-42 2.3E-47 323.6 21.1 285 98-384 18-322 (569)
18 COG1197 Mfd Transcription-repa 100.0 2.8E-43 6.2E-48 364.2 18.0 318 45-384 509-859 (1139)
19 PRK01297 ATP-dependent RNA hel 100.0 1.9E-40 4.2E-45 332.5 36.0 285 97-384 85-389 (475)
20 KOG0345 ATP-dependent RNA heli 100.0 2.7E-41 6E-46 316.7 27.5 278 99-378 4-305 (567)
21 KOG0326 ATP-dependent RNA heli 100.0 1.2E-43 2.5E-48 318.2 10.0 301 73-383 57-375 (459)
22 PTZ00424 helicase 45; Provisio 100.0 5.1E-40 1.1E-44 323.2 32.2 279 98-384 27-321 (401)
23 KOG0342 ATP-dependent RNA heli 100.0 5E-41 1.1E-45 316.8 22.3 282 98-382 81-382 (543)
24 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-40 2.8E-45 315.6 24.6 288 94-384 240-571 (673)
25 KOG0340 ATP-dependent RNA heli 100.0 5.1E-41 1.1E-45 305.1 20.2 280 98-384 6-308 (442)
26 KOG0348 ATP-dependent RNA heli 100.0 1.5E-40 3.2E-45 315.7 21.9 284 96-380 133-497 (708)
27 TIGR00580 mfd transcription-re 100.0 6E-39 1.3E-43 337.7 24.1 312 45-384 366-716 (926)
28 KOG0341 DEAD-box protein abstr 100.0 1.7E-40 3.7E-45 304.5 10.4 288 94-384 165-475 (610)
29 KOG0335 ATP-dependent RNA heli 100.0 3.6E-39 7.7E-44 308.6 19.9 283 99-384 74-391 (482)
30 KOG0334 RNA helicase [RNA proc 100.0 5.2E-39 1.1E-43 327.1 21.9 290 92-384 358-667 (997)
31 PRK10689 transcription-repair 100.0 1.7E-38 3.6E-43 340.8 24.4 314 45-384 515-865 (1147)
32 KOG0327 Translation initiation 100.0 3.5E-38 7.7E-43 290.2 16.4 277 99-384 26-317 (397)
33 KOG0347 RNA helicase [RNA proc 100.0 6.7E-37 1.5E-41 291.7 17.9 286 93-380 175-513 (731)
34 TIGR03817 DECH_helic helicase/ 100.0 2.8E-35 6E-40 306.8 31.2 266 105-384 20-333 (742)
35 KOG0337 ATP-dependent RNA heli 100.0 1.2E-36 2.7E-41 281.9 17.5 277 99-383 21-314 (529)
36 KOG0332 ATP-dependent RNA heli 100.0 1.9E-36 4.1E-41 276.9 16.8 278 96-384 87-384 (477)
37 KOG4284 DEAD box protein [Tran 100.0 2.6E-36 5.6E-41 291.9 17.5 280 96-384 22-326 (980)
38 PRK02362 ski2-like helicase; P 100.0 9.2E-34 2E-38 297.6 25.0 179 99-289 1-184 (737)
39 cd00268 DEADc DEAD-box helicas 100.0 5.1E-33 1.1E-37 248.1 25.1 200 101-304 1-202 (203)
40 PLN03137 ATP-dependent DNA hel 100.0 2E-32 4.2E-37 285.7 29.3 261 103-384 441-734 (1195)
41 PRK00254 ski2-like helicase; P 100.0 1.1E-32 2.3E-37 288.8 27.2 184 100-295 2-187 (720)
42 PRK13767 ATP-dependent helicas 100.0 5.1E-32 1.1E-36 287.5 26.2 276 106-384 18-344 (876)
43 TIGR00614 recQ_fam ATP-depende 100.0 1E-31 2.2E-36 268.7 26.8 247 117-384 7-280 (470)
44 PRK01172 ski2-like helicase; P 100.0 8.9E-32 1.9E-36 280.5 21.2 182 100-295 2-187 (674)
45 PRK10917 ATP-dependent DNA hel 100.0 2.7E-30 5.8E-35 268.2 28.8 254 107-384 247-535 (681)
46 PRK11057 ATP-dependent DNA hel 100.0 3E-30 6.6E-35 264.9 28.7 258 105-384 8-290 (607)
47 COG1201 Lhr Lhr-like helicases 100.0 1.1E-30 2.4E-35 267.4 24.7 270 106-383 8-307 (814)
48 TIGR01389 recQ ATP-dependent D 100.0 2E-30 4.4E-35 266.5 26.7 250 112-384 3-278 (591)
49 KOG0329 ATP-dependent RNA heli 100.0 2.7E-32 5.8E-37 238.4 10.5 223 99-328 42-268 (387)
50 KOG0344 ATP-dependent RNA heli 100.0 6.8E-31 1.5E-35 253.5 16.9 286 96-384 129-442 (593)
51 KOG0350 DEAD-box ATP-dependent 100.0 1E-30 2.3E-35 247.1 16.5 280 99-384 127-487 (620)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-30 6.1E-35 265.7 21.1 246 113-378 7-323 (844)
53 TIGR00643 recG ATP-dependent D 100.0 2E-29 4.3E-34 260.0 27.4 252 109-384 224-512 (630)
54 PRK09401 reverse gyrase; Revie 100.0 3.2E-29 6.9E-34 270.0 29.3 254 109-384 68-380 (1176)
55 PRK14701 reverse gyrase; Provi 100.0 4.7E-28 1E-32 266.2 29.4 254 108-384 66-382 (1638)
56 COG1202 Superfamily II helicas 100.0 1.4E-28 3.1E-33 236.1 20.0 271 97-384 192-494 (830)
57 TIGR01054 rgy reverse gyrase. 100.0 6.8E-28 1.5E-32 260.1 27.4 256 108-384 65-379 (1171)
58 COG1205 Distinct helicase fami 100.0 1.2E-27 2.5E-32 250.9 28.2 266 106-383 55-367 (851)
59 COG1200 RecG RecG-like helicas 100.0 4.1E-28 8.9E-33 240.0 23.1 256 103-384 244-537 (677)
60 PF00270 DEAD: DEAD/DEAH box h 100.0 1.1E-27 2.4E-32 207.0 20.6 163 123-292 1-168 (169)
61 PRK09751 putative ATP-dependen 100.0 2E-27 4.4E-32 257.3 20.0 238 141-384 1-331 (1490)
62 COG0514 RecQ Superfamily II DN 100.0 2.5E-27 5.5E-32 234.8 17.6 255 110-384 5-284 (590)
63 COG1204 Superfamily II helicas 99.9 2.6E-26 5.7E-31 237.7 22.0 187 104-302 14-205 (766)
64 PHA02558 uvsW UvsW helicase; P 99.9 1.7E-24 3.8E-29 218.0 24.6 243 119-383 112-397 (501)
65 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.9E-23 6.2E-28 217.2 27.4 234 126-384 7-266 (819)
66 TIGR01587 cas3_core CRISPR-ass 99.9 6.1E-24 1.3E-28 206.0 19.8 235 138-384 1-282 (358)
67 PHA02653 RNA helicase NPH-II; 99.9 2.5E-23 5.5E-28 212.9 24.2 242 123-384 166-450 (675)
68 PRK11664 ATP-dependent RNA hel 99.9 5.4E-23 1.2E-27 215.5 25.6 234 126-384 10-269 (812)
69 KOG0952 DNA/RNA helicase MER3/ 99.9 2.8E-23 6.1E-28 211.3 18.2 168 117-289 106-288 (1230)
70 KOG0349 Putative DEAD-box RNA 99.9 1.3E-23 2.8E-28 196.1 12.2 210 172-383 285-561 (725)
71 TIGR03158 cas3_cyano CRISPR-as 99.9 1.6E-21 3.6E-26 188.3 25.6 234 125-373 1-317 (357)
72 PRK05580 primosome assembly pr 99.9 2.4E-21 5.2E-26 200.8 28.2 157 121-295 144-313 (679)
73 KOG0352 ATP-dependent DNA heli 99.9 2.7E-23 5.8E-28 193.8 11.8 262 109-384 6-309 (641)
74 KOG0353 ATP-dependent DNA heli 99.9 3.2E-22 6.9E-27 184.2 17.4 269 99-384 71-371 (695)
75 KOG0351 ATP-dependent DNA heli 99.9 1.8E-22 3.8E-27 211.1 17.4 256 109-384 251-539 (941)
76 smart00487 DEXDc DEAD-like hel 99.9 1.9E-21 4.2E-26 171.0 21.2 183 117-306 4-190 (201)
77 PRK13766 Hef nuclease; Provisi 99.9 2.5E-20 5.5E-25 197.8 29.1 161 119-289 13-175 (773)
78 COG1111 MPH1 ERCC4-like helica 99.9 2.6E-20 5.7E-25 178.1 23.6 222 120-354 14-243 (542)
79 PRK12899 secA preprotein trans 99.8 3.6E-20 7.9E-25 190.7 15.9 146 102-258 65-228 (970)
80 COG1061 SSL2 DNA or RNA helica 99.8 1.1E-19 2.4E-24 180.0 18.4 146 121-289 36-186 (442)
81 PRK12898 secA preprotein trans 99.8 4.4E-19 9.5E-24 179.6 22.0 128 117-258 100-255 (656)
82 TIGR00595 priA primosomal prot 99.8 1.6E-18 3.4E-23 173.9 22.4 137 140-294 1-147 (505)
83 KOG0354 DEAD-box like helicase 99.8 4.4E-19 9.4E-24 178.6 16.4 165 120-292 61-227 (746)
84 PRK09694 helicase Cas3; Provis 99.8 7.1E-18 1.5E-22 177.0 25.9 253 120-380 285-618 (878)
85 TIGR00603 rad25 DNA repair hel 99.8 1.6E-18 3.5E-23 177.3 20.3 147 121-289 255-414 (732)
86 TIGR00963 secA preprotein tran 99.8 5.8E-18 1.3E-22 172.5 22.3 129 117-259 53-190 (745)
87 PRK09200 preprotein translocas 99.8 6.9E-18 1.5E-22 174.3 23.1 129 117-258 75-212 (790)
88 TIGR03714 secA2 accessory Sec 99.8 6.7E-18 1.4E-22 173.0 22.5 129 118-258 68-208 (762)
89 KOG0951 RNA helicase BRR2, DEA 99.8 2.2E-18 4.7E-23 178.2 18.7 177 106-289 296-487 (1674)
90 COG4581 Superfamily II RNA hel 99.8 1.3E-18 2.8E-23 181.5 17.1 163 116-296 115-279 (1041)
91 PRK11131 ATP-dependent RNA hel 99.8 4E-17 8.8E-22 175.1 24.1 231 125-383 78-340 (1294)
92 cd00046 DEXDc DEAD-like helica 99.8 3.5E-17 7.5E-22 135.6 16.6 143 137-286 1-144 (144)
93 PRK13104 secA preprotein trans 99.8 6.5E-17 1.4E-21 167.1 21.3 127 118-258 80-215 (896)
94 KOG0947 Cytoplasmic exosomal R 99.7 1.1E-17 2.4E-22 169.3 13.8 160 118-297 295-454 (1248)
95 PF04851 ResIII: Type III rest 99.7 2.4E-16 5.2E-21 137.5 16.0 150 121-287 3-183 (184)
96 KOG0948 Nuclear exosomal RNA h 99.7 2.7E-16 5.9E-21 155.9 14.5 169 120-307 128-299 (1041)
97 PRK12904 preprotein translocas 99.7 2.9E-15 6.3E-20 154.7 22.0 128 117-258 78-214 (830)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.7 2.1E-15 4.5E-20 162.5 20.9 229 127-377 73-329 (1283)
99 COG1110 Reverse gyrase [DNA re 99.7 5.6E-15 1.2E-19 151.5 21.7 252 109-384 70-387 (1187)
100 COG4098 comFA Superfamily II D 99.7 6.6E-15 1.4E-19 134.8 18.9 235 121-384 97-359 (441)
101 KOG0950 DNA polymerase theta/e 99.6 2.4E-15 5.2E-20 153.3 14.9 172 106-289 208-390 (1008)
102 COG1198 PriA Primosomal protei 99.6 1.2E-13 2.6E-18 141.6 23.9 157 120-294 197-367 (730)
103 COG1203 CRISPR-associated heli 99.6 1.4E-14 3E-19 151.9 12.7 250 122-377 196-487 (733)
104 PRK13107 preprotein translocas 99.6 1E-13 2.3E-18 143.3 18.6 127 118-258 80-215 (908)
105 PRK11448 hsdR type I restricti 99.5 1.4E-13 3E-18 148.8 17.4 159 121-290 413-598 (1123)
106 PRK04914 ATP-dependent helicas 99.5 1.2E-12 2.7E-17 138.7 23.2 157 121-287 152-316 (956)
107 TIGR00348 hsdR type I site-spe 99.5 7.3E-13 1.6E-17 137.7 15.9 152 122-288 239-404 (667)
108 COG1643 HrpA HrpA-like helicas 99.4 1.3E-11 2.8E-16 128.6 22.7 233 123-380 52-313 (845)
109 TIGR01407 dinG_rel DnaQ family 99.4 4.2E-12 9E-17 135.9 17.4 75 107-191 232-310 (850)
110 PLN03142 Probable chromatin-re 99.4 1.1E-10 2.5E-15 124.5 23.5 155 121-287 169-330 (1033)
111 KOG0949 Predicted helicase, DE 99.3 1.1E-11 2.4E-16 126.6 14.1 158 121-289 511-674 (1330)
112 PF07652 Flavi_DEAD: Flaviviru 99.3 1.6E-11 3.5E-16 100.8 12.1 137 135-291 3-141 (148)
113 COG4096 HsdR Type I site-speci 99.3 3.2E-12 6.9E-17 129.6 9.3 158 121-298 165-332 (875)
114 TIGR03117 cas_csf4 CRISPR-asso 99.3 2.2E-11 4.7E-16 124.1 14.8 61 130-197 10-70 (636)
115 PRK12906 secA preprotein trans 99.3 9.5E-11 2.1E-15 121.2 19.5 128 117-258 77-213 (796)
116 KOG0922 DEAH-box RNA helicase 99.3 9.6E-10 2.1E-14 109.4 22.6 229 123-377 53-313 (674)
117 PRK07246 bifunctional ATP-depe 99.3 8.6E-11 1.9E-15 124.5 16.0 68 117-195 242-314 (820)
118 smart00489 DEXDc3 DEAD-like he 99.2 3.5E-10 7.5E-15 106.2 15.2 76 118-196 5-84 (289)
119 smart00488 DEXDc2 DEAD-like he 99.2 3.5E-10 7.5E-15 106.2 15.2 76 118-196 5-84 (289)
120 PF00176 SNF2_N: SNF2 family N 99.2 2.1E-10 4.5E-15 108.0 11.9 156 125-288 1-174 (299)
121 PRK13103 secA preprotein trans 99.2 1.8E-10 4E-15 119.6 11.8 128 117-258 79-215 (913)
122 KOG1123 RNA polymerase II tran 99.2 4.8E-11 1E-15 114.4 6.6 149 121-291 302-463 (776)
123 PRK08074 bifunctional ATP-depe 99.1 7.2E-10 1.6E-14 119.5 16.1 65 118-191 255-323 (928)
124 KOG0920 ATP-dependent RNA heli 99.1 1.1E-08 2.3E-13 106.9 22.2 171 122-308 174-348 (924)
125 PRK14873 primosome assembly pr 99.1 9.3E-10 2E-14 113.5 13.5 138 142-296 166-313 (665)
126 KOG4150 Predicted ATP-dependen 99.1 8.2E-10 1.8E-14 107.5 11.7 255 114-380 279-583 (1034)
127 KOG0923 mRNA splicing factor A 99.0 4.2E-08 9.2E-13 97.4 19.6 232 122-378 266-530 (902)
128 PRK12326 preprotein translocas 99.0 3.1E-09 6.6E-14 108.2 12.0 128 117-258 75-211 (764)
129 COG0556 UvrB Helicase subunit 98.9 1.7E-08 3.7E-13 98.1 14.1 72 118-202 10-86 (663)
130 PRK11747 dinG ATP-dependent DN 98.9 3.8E-08 8.3E-13 103.1 15.5 64 118-190 23-95 (697)
131 COG4889 Predicted helicase [Ge 98.9 3.2E-09 6.8E-14 107.9 6.9 152 97-260 138-319 (1518)
132 KOG0390 DNA repair protein, SN 98.9 3.8E-07 8.3E-12 94.0 21.5 153 121-286 238-414 (776)
133 PF07517 SecA_DEAD: SecA DEAD- 98.8 6.5E-08 1.4E-12 88.9 14.1 128 117-258 74-210 (266)
134 KOG0385 Chromatin remodeling c 98.8 8.6E-08 1.9E-12 96.7 14.6 155 121-287 167-328 (971)
135 KOG0951 RNA helicase BRR2, DEA 98.7 4.3E-08 9.2E-13 103.2 10.2 150 121-289 1143-1302(1674)
136 KOG0925 mRNA splicing factor A 98.7 9.6E-07 2.1E-11 85.1 18.1 195 98-308 24-220 (699)
137 CHL00122 secA preprotein trans 98.7 7.1E-08 1.5E-12 100.2 10.6 128 117-258 73-209 (870)
138 COG0610 Type I site-specific r 98.7 2.3E-07 5E-12 100.0 13.7 140 137-289 274-416 (962)
139 PRK12902 secA preprotein trans 98.7 1.3E-07 2.9E-12 98.2 11.3 128 117-258 82-218 (939)
140 KOG0924 mRNA splicing factor A 98.7 2.9E-06 6.3E-11 84.9 20.1 149 122-288 357-512 (1042)
141 PRK15483 type III restriction- 98.7 3.1E-07 6.8E-12 96.9 14.0 140 138-288 61-240 (986)
142 PF02562 PhoH: PhoH-like prote 98.6 3.3E-07 7.1E-12 81.0 11.6 145 120-285 3-155 (205)
143 COG1199 DinG Rad3-related DNA 98.6 3.3E-07 7.1E-12 96.1 13.7 70 117-194 11-84 (654)
144 KOG0387 Transcription-coupled 98.6 3.6E-07 7.8E-12 92.6 13.1 157 121-289 205-378 (923)
145 TIGR00604 rad3 DNA repair heli 98.6 5.3E-07 1.2E-11 95.0 13.0 72 119-196 8-83 (705)
146 TIGR00631 uvrb excinuclease AB 98.6 7.9E-06 1.7E-10 84.9 20.7 73 121-205 9-86 (655)
147 PF13086 AAA_11: AAA domain; P 98.6 5.7E-07 1.2E-11 81.2 10.9 74 121-195 1-75 (236)
148 KOG0953 Mitochondrial RNA heli 98.5 1.3E-07 2.8E-12 92.4 6.1 213 137-384 192-413 (700)
149 KOG0389 SNF2 family DNA-depend 98.5 5.5E-07 1.2E-11 91.2 9.8 159 117-287 396-563 (941)
150 PF06862 DUF1253: Protein of u 98.4 3E-05 6.5E-10 76.0 19.7 213 171-384 35-354 (442)
151 PF13604 AAA_30: AAA domain; P 98.4 1.6E-06 3.5E-11 76.8 10.0 120 121-285 1-130 (196)
152 TIGR02562 cas3_yersinia CRISPR 98.4 3.1E-06 6.8E-11 89.6 12.9 164 122-293 409-641 (1110)
153 KOG0926 DEAH-box RNA helicase 98.4 3.3E-06 7.1E-11 85.9 11.4 144 130-286 265-424 (1172)
154 PRK10536 hypothetical protein; 98.3 3.7E-05 7.9E-10 70.1 15.1 142 118-282 56-209 (262)
155 KOG0391 SNF2 family DNA-depend 98.3 5E-06 1.1E-10 87.4 10.5 156 121-288 615-777 (1958)
156 PF02399 Herpes_ori_bp: Origin 98.2 1.2E-05 2.5E-10 83.2 12.3 146 138-300 51-204 (824)
157 PRK12903 secA preprotein trans 98.2 6.2E-06 1.4E-10 85.8 10.3 127 118-258 76-211 (925)
158 KOG4439 RNA polymerase II tran 98.2 3.7E-06 8.1E-11 84.4 7.8 163 121-288 325-503 (901)
159 PRK05298 excinuclease ABC subu 98.2 0.00015 3.2E-09 75.8 20.0 75 118-205 10-89 (652)
160 PF13872 AAA_34: P-loop contai 98.2 4.1E-05 9E-10 70.9 14.0 241 103-369 25-297 (303)
161 KOG1000 Chromatin remodeling p 98.2 1.1E-05 2.4E-10 78.1 10.5 150 120-286 197-348 (689)
162 PF09848 DUF2075: Uncharacteri 98.2 8.9E-06 1.9E-10 78.7 10.2 107 138-272 3-117 (352)
163 KOG0952 DNA/RNA helicase MER3/ 98.2 1.3E-06 2.8E-11 91.1 4.4 152 122-284 928-1091(1230)
164 KOG0392 SNF2 family DNA-depend 98.2 1.7E-05 3.7E-10 84.1 12.0 167 121-293 975-1146(1549)
165 KOG0384 Chromodomain-helicase 98.0 2.1E-05 4.6E-10 83.5 9.7 158 120-293 369-543 (1373)
166 PRK10875 recD exonuclease V su 98.0 0.0001 2.2E-09 75.9 14.2 143 122-285 153-301 (615)
167 TIGR00376 DNA helicase, putati 98.0 8.4E-05 1.8E-09 77.2 13.6 68 120-196 156-224 (637)
168 KOG1002 Nucleotide excision re 98.0 5.8E-05 1.3E-09 73.3 10.7 127 121-260 184-331 (791)
169 PRK12900 secA preprotein trans 98.0 2E-05 4.3E-10 83.2 7.8 125 121-258 138-271 (1025)
170 TIGR01448 recD_rel helicase, p 97.9 0.00017 3.6E-09 76.2 14.7 133 117-285 320-452 (720)
171 TIGR01447 recD exodeoxyribonuc 97.9 0.00017 3.6E-09 74.2 14.3 143 123-285 147-295 (586)
172 KOG1802 RNA helicase nonsense 97.9 5.4E-05 1.2E-09 75.8 10.0 77 113-197 402-478 (935)
173 KOG1803 DNA helicase [Replicat 97.9 7.4E-05 1.6E-09 74.4 10.9 65 121-194 185-250 (649)
174 KOG0388 SNF2 family DNA-depend 97.9 8.1E-05 1.8E-09 75.1 9.7 157 121-289 567-736 (1185)
175 PF12340 DUF3638: Protein of u 97.8 0.00052 1.1E-08 61.5 13.2 149 100-259 4-186 (229)
176 PRK12901 secA preprotein trans 97.8 4.9E-05 1.1E-09 80.5 7.4 126 121-258 169-303 (1112)
177 PRK13889 conjugal transfer rel 97.8 0.0007 1.5E-08 73.1 15.7 127 116-285 342-470 (988)
178 COG1875 NYN ribonuclease and A 97.8 0.00024 5.3E-09 67.0 10.6 147 117-283 224-385 (436)
179 KOG1132 Helicase of the DEAD s 97.7 0.00032 6.9E-09 72.7 12.2 80 118-197 18-134 (945)
180 KOG2340 Uncharacterized conser 97.7 0.00035 7.6E-09 68.6 11.8 180 121-301 216-494 (698)
181 PF13245 AAA_19: Part of AAA d 97.7 0.00011 2.4E-09 54.4 6.6 60 129-193 2-62 (76)
182 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00077 1.7E-08 71.4 15.2 134 107-283 339-474 (744)
183 PF14617 CMS1: U3-containing 9 97.7 0.00013 2.9E-09 66.4 7.2 85 171-255 124-211 (252)
184 COG3587 Restriction endonuclea 97.6 0.00026 5.6E-09 73.1 9.6 142 138-291 76-247 (985)
185 PRK06526 transposase; Provisio 97.6 0.0006 1.3E-08 62.8 11.3 128 134-309 96-234 (254)
186 PRK08181 transposase; Validate 97.6 0.0023 5.1E-08 59.3 15.1 109 133-289 103-212 (269)
187 KOG0386 Chromatin remodeling c 97.5 0.00016 3.5E-09 75.6 6.7 152 121-286 394-554 (1157)
188 COG0553 HepA Superfamily II DN 97.5 0.00059 1.3E-08 73.8 11.0 158 120-286 337-510 (866)
189 PRK13826 Dtr system oriT relax 97.5 0.0026 5.6E-08 69.3 15.5 138 105-285 366-505 (1102)
190 cd00009 AAA The AAA+ (ATPases 97.5 0.0021 4.5E-08 52.8 11.9 18 136-153 19-36 (151)
191 PRK04296 thymidine kinase; Pro 97.5 0.00041 9E-09 61.0 7.5 36 137-181 3-38 (190)
192 PF05970 PIF1: PIF1-like helic 97.4 0.00063 1.4E-08 66.2 9.3 121 121-273 1-129 (364)
193 PF00580 UvrD-helicase: UvrD/R 97.4 0.0006 1.3E-08 64.3 8.0 123 122-255 1-125 (315)
194 PRK14974 cell division protein 97.4 0.0036 7.7E-08 59.9 13.0 132 137-298 141-276 (336)
195 KOG1805 DNA replication helica 97.3 0.0025 5.5E-08 66.9 11.7 139 104-259 656-810 (1100)
196 PRK08116 hypothetical protein; 97.3 0.0063 1.4E-07 56.5 13.5 107 138-290 116-225 (268)
197 PF13401 AAA_22: AAA domain; P 97.3 0.00081 1.8E-08 54.9 6.7 19 135-153 3-21 (131)
198 PRK06835 DNA replication prote 97.2 0.015 3.2E-07 55.7 14.9 128 135-308 182-316 (329)
199 PHA02533 17 large terminase pr 97.2 0.0042 9.1E-08 63.2 11.7 150 121-287 59-210 (534)
200 PRK12723 flagellar biosynthesi 97.1 0.017 3.7E-07 56.4 15.2 130 137-297 175-309 (388)
201 PRK14722 flhF flagellar biosyn 97.1 0.01 2.3E-07 57.5 13.3 130 136-298 137-270 (374)
202 smart00382 AAA ATPases associa 97.1 0.0017 3.6E-08 52.8 6.9 18 136-153 2-19 (148)
203 PRK05642 DNA replication initi 97.1 0.0029 6.2E-08 57.6 8.7 45 244-288 96-141 (234)
204 PRK06893 DNA replication initi 97.1 0.0025 5.4E-08 57.8 8.2 46 244-289 90-137 (229)
205 PRK07952 DNA replication prote 97.0 0.013 2.8E-07 53.5 12.7 107 137-289 100-208 (244)
206 PRK11331 5-methylcytosine-spec 97.0 0.0063 1.4E-07 60.0 11.1 32 122-153 180-211 (459)
207 PRK08727 hypothetical protein; 97.0 0.0059 1.3E-07 55.5 10.3 47 244-290 92-140 (233)
208 PRK06921 hypothetical protein; 97.0 0.018 3.9E-07 53.4 13.5 46 135-189 116-161 (266)
209 PRK11889 flhF flagellar biosyn 97.0 0.021 4.7E-07 55.4 14.2 129 137-299 242-376 (436)
210 PF00448 SRP54: SRP54-type pro 97.0 0.0055 1.2E-07 54.1 9.5 131 139-298 4-137 (196)
211 PRK12377 putative replication 96.9 0.02 4.2E-07 52.5 12.9 102 137-285 102-205 (248)
212 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0077 1.7E-07 54.2 9.8 44 245-288 90-134 (226)
213 PRK08084 DNA replication initi 96.9 0.0052 1.1E-07 56.0 8.6 43 246-289 98-143 (235)
214 COG0653 SecA Preprotein transl 96.8 0.0035 7.7E-08 65.6 8.0 127 118-258 78-213 (822)
215 PRK00149 dnaA chromosomal repl 96.8 0.0037 8E-08 62.6 8.0 108 137-290 149-258 (450)
216 PRK05703 flhF flagellar biosyn 96.8 0.077 1.7E-06 52.6 16.9 130 136-298 221-355 (424)
217 PRK08903 DnaA regulatory inact 96.8 0.014 3E-07 52.8 10.7 43 245-288 90-133 (227)
218 TIGR00362 DnaA chromosomal rep 96.8 0.013 2.7E-07 58.0 11.2 109 137-291 137-247 (405)
219 PF00308 Bac_DnaA: Bacterial d 96.7 0.006 1.3E-07 54.9 7.8 107 138-290 36-144 (219)
220 PRK14088 dnaA chromosomal repl 96.7 0.007 1.5E-07 60.3 9.0 114 137-295 131-246 (440)
221 PRK09183 transposase/IS protei 96.7 0.034 7.4E-07 51.4 12.9 47 133-189 99-145 (259)
222 PRK12402 replication factor C 96.7 0.015 3.2E-07 55.7 11.0 41 243-284 123-163 (337)
223 cd01120 RecA-like_NTPases RecA 96.7 0.022 4.7E-07 47.8 10.9 39 139-186 2-40 (165)
224 cd01124 KaiC KaiC is a circadi 96.7 0.0038 8.2E-08 54.3 6.3 49 139-197 2-50 (187)
225 PF05621 TniB: Bacterial TniB 96.6 0.012 2.6E-07 54.9 9.3 117 137-282 62-186 (302)
226 COG1484 DnaC DNA replication p 96.6 0.0082 1.8E-07 55.3 8.0 51 135-195 104-154 (254)
227 TIGR01075 uvrD DNA helicase II 96.6 0.0068 1.5E-07 64.4 8.3 72 120-198 3-74 (715)
228 PRK11054 helD DNA helicase IV; 96.6 0.025 5.4E-07 59.4 12.2 71 120-197 195-265 (684)
229 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.03 6.4E-07 47.6 10.5 135 139-295 5-147 (159)
230 PF13173 AAA_14: AAA domain 96.6 0.032 7E-07 45.5 10.5 38 245-285 61-98 (128)
231 TIGR01547 phage_term_2 phage t 96.6 0.0067 1.4E-07 59.7 7.5 143 139-298 4-152 (396)
232 PRK07764 DNA polymerase III su 96.5 0.0093 2E-07 63.7 8.9 39 244-283 119-157 (824)
233 PRK12727 flagellar biosynthesi 96.5 0.16 3.4E-06 51.4 16.8 55 243-298 426-482 (559)
234 PRK11773 uvrD DNA-dependent he 96.5 0.0078 1.7E-07 64.0 7.9 70 121-197 9-78 (721)
235 TIGR00596 rad1 DNA repair prot 96.5 0.034 7.4E-07 59.3 12.4 84 222-305 8-97 (814)
236 PRK14712 conjugal transfer nic 96.5 0.045 9.8E-07 61.9 13.8 65 121-190 835-901 (1623)
237 PRK00771 signal recognition pa 96.4 0.025 5.4E-07 56.1 10.7 53 246-298 176-229 (437)
238 KOG0989 Replication factor C, 96.4 0.005 1.1E-07 57.0 5.2 44 242-286 126-169 (346)
239 PRK12422 chromosomal replicati 96.4 0.028 6.1E-07 56.1 10.9 109 137-293 142-252 (445)
240 COG1419 FlhF Flagellar GTP-bin 96.4 0.09 2E-06 51.0 13.5 132 136-299 203-337 (407)
241 PRK10919 ATP-dependent DNA hel 96.4 0.02 4.4E-07 60.2 10.0 71 121-198 2-72 (672)
242 TIGR00064 ftsY signal recognit 96.3 0.1 2.2E-06 48.6 13.5 132 137-298 73-214 (272)
243 TIGR02760 TraI_TIGR conjugativ 96.3 0.04 8.6E-07 64.4 13.0 135 121-285 429-566 (1960)
244 PHA02544 44 clamp loader, smal 96.3 0.024 5.1E-07 53.9 9.5 41 244-284 99-139 (316)
245 PRK06731 flhF flagellar biosyn 96.3 0.15 3.3E-06 47.3 14.4 130 135-298 74-209 (270)
246 PF00004 AAA: ATPase family as 96.3 0.068 1.5E-06 43.2 11.0 15 139-153 1-15 (132)
247 KOG0344 ATP-dependent RNA heli 96.3 0.17 3.6E-06 50.9 15.3 103 140-256 361-467 (593)
248 PRK14086 dnaA chromosomal repl 96.3 0.006 1.3E-07 62.5 5.5 48 243-290 375-424 (617)
249 PRK14723 flhF flagellar biosyn 96.3 0.16 3.5E-06 53.6 16.0 128 137-297 186-317 (767)
250 PRK14087 dnaA chromosomal repl 96.3 0.03 6.5E-07 56.0 10.2 109 137-289 142-252 (450)
251 PRK05986 cob(I)alamin adenolsy 96.3 0.056 1.2E-06 47.3 10.6 145 134-295 20-167 (191)
252 PRK08533 flagellar accessory p 96.2 0.043 9.3E-07 49.8 10.1 54 134-197 22-75 (230)
253 cd01122 GP4d_helicase GP4d_hel 96.2 0.017 3.8E-07 53.5 7.8 118 133-260 27-155 (271)
254 PF00271 Helicase_C: Helicase 96.2 0.004 8.6E-08 45.9 2.6 36 349-384 2-37 (78)
255 COG3421 Uncharacterized protei 96.1 0.009 2E-07 59.9 5.6 148 141-297 2-175 (812)
256 PF03354 Terminase_1: Phage Te 96.1 0.023 5E-07 57.4 8.8 149 124-283 1-160 (477)
257 KOG1015 Transcription regulato 96.1 0.06 1.3E-06 56.9 11.6 143 136-287 696-860 (1567)
258 PRK00411 cdc6 cell division co 96.1 0.044 9.6E-07 53.8 10.5 24 137-161 56-79 (394)
259 KOG0298 DEAD box-containing he 96.1 0.021 4.5E-07 61.8 8.4 154 136-293 374-557 (1394)
260 TIGR01074 rep ATP-dependent DN 96.0 0.041 9E-07 58.0 10.6 70 122-198 2-71 (664)
261 PRK11823 DNA repair protein Ra 96.0 0.097 2.1E-06 52.3 12.5 97 130-259 69-170 (446)
262 TIGR03600 phage_DnaB phage rep 96.0 0.11 2.4E-06 51.6 12.9 141 136-285 194-353 (421)
263 COG0593 DnaA ATPase involved i 96.0 0.03 6.6E-07 54.6 8.4 47 245-291 175-223 (408)
264 PLN03025 replication factor C 96.0 0.057 1.2E-06 51.5 10.3 42 244-287 98-139 (319)
265 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.067 1.4E-06 48.7 10.1 52 136-197 21-72 (237)
266 TIGR02785 addA_Gpos recombinat 95.9 0.032 6.8E-07 62.8 9.4 123 122-256 2-126 (1232)
267 TIGR02881 spore_V_K stage V sp 95.9 0.079 1.7E-06 49.0 10.6 17 137-153 43-59 (261)
268 PRK13709 conjugal transfer nic 95.9 0.082 1.8E-06 60.6 12.5 65 121-190 967-1033(1747)
269 PRK05707 DNA polymerase III su 95.9 0.056 1.2E-06 51.7 9.7 39 122-161 4-46 (328)
270 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.21 4.5E-06 48.5 13.2 109 136-289 62-171 (362)
271 PRK08769 DNA polymerase III su 95.8 0.072 1.6E-06 50.7 9.8 42 120-162 3-51 (319)
272 PRK06995 flhF flagellar biosyn 95.7 0.38 8.2E-06 48.4 15.1 22 136-157 256-277 (484)
273 TIGR00708 cobA cob(I)alamin ad 95.7 0.092 2E-06 45.2 9.5 53 243-295 95-149 (173)
274 cd00984 DnaB_C DnaB helicase C 95.7 0.097 2.1E-06 47.6 10.3 137 135-285 12-172 (242)
275 PRK13342 recombination factor 95.7 0.067 1.4E-06 53.0 9.8 39 245-288 92-130 (413)
276 smart00490 HELICc helicase sup 95.7 0.011 2.4E-07 43.3 3.3 39 346-384 3-41 (82)
277 KOG0921 Dosage compensation co 95.7 0.068 1.5E-06 56.2 9.8 120 128-257 385-505 (1282)
278 PF06745 KaiC: KaiC; InterPro 95.7 0.025 5.5E-07 51.0 6.1 131 136-286 19-160 (226)
279 PRK06904 replicative DNA helic 95.7 0.18 4E-06 50.7 12.8 142 135-285 220-383 (472)
280 TIGR03015 pepcterm_ATPase puta 95.6 0.24 5.2E-06 45.7 12.8 32 122-153 24-60 (269)
281 KOG1001 Helicase-like transcri 95.6 0.06 1.3E-06 56.2 9.2 140 138-289 154-295 (674)
282 PRK13894 conjugal transfer ATP 95.6 0.052 1.1E-06 51.7 8.2 65 112-185 125-190 (319)
283 PRK13833 conjugal transfer pro 95.6 0.06 1.3E-06 51.3 8.4 64 114-186 123-187 (323)
284 KOG0991 Replication factor C, 95.5 0.058 1.3E-06 48.3 7.6 41 244-285 112-152 (333)
285 PHA00350 putative assembly pro 95.5 0.27 5.9E-06 48.0 12.8 23 139-161 4-27 (399)
286 PRK10689 transcription-repair 95.5 0.2 4.3E-06 55.8 13.2 80 172-257 808-891 (1147)
287 PTZ00112 origin recognition co 95.5 0.24 5.2E-06 52.8 12.9 24 138-162 782-806 (1164)
288 TIGR02760 TraI_TIGR conjugativ 95.4 0.21 4.6E-06 58.6 13.8 65 121-190 1019-1085(1960)
289 TIGR01073 pcrA ATP-dependent D 95.4 0.076 1.6E-06 56.6 9.6 72 120-198 3-74 (726)
290 PRK07414 cob(I)yrinic acid a,c 95.4 0.28 6.1E-06 42.4 11.3 134 139-295 24-167 (178)
291 PRK07003 DNA polymerase III su 95.4 0.083 1.8E-06 55.4 9.4 39 244-283 118-156 (830)
292 COG1474 CDC6 Cdc6-related prot 95.4 0.097 2.1E-06 50.9 9.4 25 137-162 43-67 (366)
293 TIGR01425 SRP54_euk signal rec 95.4 0.32 7E-06 48.1 13.1 57 138-204 102-160 (429)
294 cd01121 Sms Sms (bacterial rad 95.4 0.23 5E-06 48.4 12.0 90 136-258 82-171 (372)
295 PRK14721 flhF flagellar biosyn 95.4 0.3 6.5E-06 48.2 12.8 131 136-298 191-324 (420)
296 PRK00440 rfc replication facto 95.4 0.32 6.9E-06 46.0 12.9 40 244-284 101-140 (319)
297 PHA03333 putative ATPase subun 95.4 0.12 2.7E-06 53.4 10.3 150 119-287 167-333 (752)
298 CHL00181 cbbX CbbX; Provisiona 95.3 0.21 4.5E-06 46.9 11.2 19 136-154 59-77 (287)
299 PHA03368 DNA packaging termina 95.3 0.076 1.6E-06 54.6 8.6 131 137-288 255-392 (738)
300 COG2805 PilT Tfp pilus assembl 95.3 0.07 1.5E-06 49.6 7.6 49 96-163 103-151 (353)
301 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.36 7.7E-06 43.5 12.4 53 135-197 19-71 (229)
302 COG2256 MGS1 ATPase related to 95.3 0.059 1.3E-06 51.9 7.3 17 137-153 49-65 (436)
303 PRK04195 replication factor C 95.3 0.16 3.5E-06 51.4 11.0 18 136-153 39-56 (482)
304 PF05496 RuvB_N: Holliday junc 95.3 0.085 1.8E-06 47.3 7.9 16 138-153 52-67 (233)
305 PRK14958 DNA polymerase III su 95.3 0.084 1.8E-06 53.6 8.9 39 244-283 118-156 (509)
306 PHA00729 NTP-binding motif con 95.3 0.33 7.1E-06 43.7 11.6 74 223-296 60-138 (226)
307 KOG0741 AAA+-type ATPase [Post 95.3 0.12 2.5E-06 51.6 9.4 56 95-153 212-273 (744)
308 PRK13341 recombination factor 95.2 0.087 1.9E-06 55.7 9.1 46 245-295 109-154 (725)
309 PTZ00293 thymidine kinase; Pro 95.2 0.16 3.5E-06 45.2 9.5 39 136-183 4-42 (211)
310 TIGR00580 mfd transcription-re 95.2 0.089 1.9E-06 57.1 9.3 80 172-257 659-742 (926)
311 PRK12323 DNA polymerase III su 95.1 0.14 3.1E-06 52.9 10.0 41 243-284 122-162 (700)
312 PRK07994 DNA polymerase III su 95.1 0.33 7.2E-06 50.5 12.8 38 244-282 118-155 (647)
313 PRK07004 replicative DNA helic 95.1 0.15 3.3E-06 51.1 10.1 140 136-285 213-373 (460)
314 PRK10867 signal recognition pa 95.1 0.43 9.3E-06 47.4 13.0 18 138-155 102-119 (433)
315 PRK14960 DNA polymerase III su 95.1 0.13 2.7E-06 53.4 9.4 39 244-283 117-155 (702)
316 COG1444 Predicted P-loop ATPas 95.1 0.32 6.9E-06 51.0 12.5 151 111-288 204-358 (758)
317 COG1435 Tdk Thymidine kinase [ 95.1 0.17 3.8E-06 44.1 8.9 89 137-256 5-93 (201)
318 KOG1133 Helicase of the DEAD s 95.1 0.043 9.4E-07 56.0 5.9 47 118-164 12-62 (821)
319 PRK05748 replicative DNA helic 95.1 0.23 5.1E-06 49.7 11.3 141 137-286 204-365 (448)
320 TIGR02782 TrbB_P P-type conjug 95.1 0.12 2.5E-06 48.9 8.6 66 112-186 109-175 (299)
321 PRK08506 replicative DNA helic 95.0 0.21 4.6E-06 50.3 11.0 139 136-285 192-351 (472)
322 cd03115 SRP The signal recogni 95.0 0.55 1.2E-05 40.2 12.3 55 244-298 81-136 (173)
323 TIGR02928 orc1/cdc6 family rep 95.0 0.17 3.7E-06 49.0 10.1 24 137-161 41-64 (365)
324 PRK14964 DNA polymerase III su 95.0 0.15 3.2E-06 51.4 9.6 40 243-283 114-153 (491)
325 PRK14961 DNA polymerase III su 95.0 0.3 6.4E-06 47.5 11.6 40 243-283 117-156 (363)
326 PRK12726 flagellar biosynthesi 95.0 0.48 1E-05 46.0 12.6 21 136-156 206-226 (407)
327 COG0470 HolB ATPase involved i 95.0 0.13 2.8E-06 48.8 8.9 41 243-284 107-147 (325)
328 PF02572 CobA_CobO_BtuR: ATP:c 95.0 0.54 1.2E-05 40.5 11.7 138 139-295 6-148 (172)
329 PRK09111 DNA polymerase III su 95.0 0.38 8.2E-06 49.8 12.7 40 243-283 130-169 (598)
330 PRK12724 flagellar biosynthesi 94.9 0.66 1.4E-05 45.7 13.6 54 244-297 298-356 (432)
331 PRK08939 primosomal protein Dn 94.9 0.16 3.4E-06 48.2 9.1 105 136-288 156-263 (306)
332 COG1197 Mfd Transcription-repa 94.9 0.18 4E-06 54.8 10.5 148 97-257 710-885 (1139)
333 PRK05973 replicative DNA helic 94.9 0.3 6.5E-06 44.4 10.5 55 133-197 61-115 (237)
334 PRK13900 type IV secretion sys 94.8 0.099 2.2E-06 50.1 7.6 45 132-186 156-200 (332)
335 PRK08691 DNA polymerase III su 94.8 0.15 3.3E-06 53.1 9.3 40 243-283 117-156 (709)
336 TIGR00665 DnaB replicative DNA 94.8 0.28 6E-06 48.9 11.1 139 136-285 195-354 (434)
337 PF13177 DNA_pol3_delta2: DNA 94.8 0.13 2.7E-06 44.0 7.4 41 244-285 101-141 (162)
338 PRK14952 DNA polymerase III su 94.8 0.32 6.9E-06 50.2 11.6 43 243-287 116-158 (584)
339 PRK08840 replicative DNA helic 94.8 0.45 9.7E-06 47.8 12.4 142 135-285 216-378 (464)
340 PF05729 NACHT: NACHT domain 94.7 0.74 1.6E-05 38.5 12.2 56 248-306 84-147 (166)
341 PRK14956 DNA polymerase III su 94.7 0.043 9.4E-07 54.8 4.9 18 138-155 42-59 (484)
342 PRK10416 signal recognition pa 94.7 0.85 1.8E-05 43.5 13.5 55 244-298 195-256 (318)
343 PRK14949 DNA polymerase III su 94.7 0.24 5.3E-06 53.0 10.6 44 244-289 118-161 (944)
344 PF05127 Helicase_RecD: Helica 94.7 0.026 5.7E-07 48.8 2.9 125 140-288 1-125 (177)
345 PF01695 IstB_IS21: IstB-like 94.7 0.094 2E-06 45.5 6.4 46 134-189 45-90 (178)
346 PRK08699 DNA polymerase III su 94.6 0.38 8.2E-06 46.0 11.0 34 122-155 2-40 (325)
347 TIGR00678 holB DNA polymerase 94.6 0.87 1.9E-05 39.6 12.6 39 243-282 94-132 (188)
348 KOG0742 AAA+-type ATPase [Post 94.6 0.14 3.1E-06 49.5 7.8 49 99-153 352-401 (630)
349 PRK14957 DNA polymerase III su 94.6 0.35 7.5E-06 49.5 11.2 40 243-283 117-156 (546)
350 PRK13851 type IV secretion sys 94.6 0.058 1.3E-06 51.9 5.3 45 132-186 158-202 (344)
351 PRK08760 replicative DNA helic 94.6 0.25 5.4E-06 49.8 10.0 138 137-285 230-388 (476)
352 PRK06964 DNA polymerase III su 94.5 0.28 6.1E-06 47.1 9.8 40 122-162 2-46 (342)
353 PF03796 DnaB_C: DnaB-like hel 94.5 0.095 2.1E-06 48.3 6.4 142 136-286 19-180 (259)
354 PRK09087 hypothetical protein; 94.4 0.16 3.5E-06 45.9 7.6 60 247-308 89-152 (226)
355 TIGR02880 cbbX_cfxQ probable R 94.4 0.73 1.6E-05 43.2 12.2 18 136-153 58-75 (284)
356 PRK04328 hypothetical protein; 94.4 0.53 1.1E-05 43.2 11.1 53 135-197 22-74 (249)
357 PRK06067 flagellar accessory p 94.4 0.4 8.6E-06 43.4 10.2 52 136-197 25-76 (234)
358 PHA03372 DNA packaging termina 94.4 0.64 1.4E-05 47.5 12.2 125 137-286 203-337 (668)
359 PRK08006 replicative DNA helic 94.3 0.65 1.4E-05 46.8 12.4 141 136-285 224-385 (471)
360 TIGR03499 FlhF flagellar biosy 94.3 0.21 4.6E-06 46.7 8.4 18 137-154 195-212 (282)
361 TIGR00959 ffh signal recogniti 94.3 1 2.3E-05 44.6 13.5 18 138-155 101-118 (428)
362 COG2909 MalT ATP-dependent tra 94.3 0.71 1.5E-05 48.8 12.6 44 245-288 129-172 (894)
363 PRK04841 transcriptional regul 94.3 0.79 1.7E-05 50.0 14.0 44 245-288 121-164 (903)
364 PRK06871 DNA polymerase III su 94.3 0.43 9.3E-06 45.6 10.4 40 122-162 3-49 (325)
365 PRK14969 DNA polymerase III su 94.2 0.3 6.4E-06 50.0 9.8 40 243-283 117-156 (527)
366 COG0466 Lon ATP-dependent Lon 94.2 0.16 3.6E-06 52.4 7.8 97 136-274 350-446 (782)
367 PRK06645 DNA polymerase III su 94.2 0.68 1.5E-05 47.0 12.2 19 137-155 44-62 (507)
368 TIGR00416 sms DNA repair prote 94.2 0.57 1.2E-05 47.0 11.5 90 136-258 94-183 (454)
369 COG4962 CpaF Flp pilus assembl 94.1 0.11 2.4E-06 49.3 5.9 61 118-188 154-215 (355)
370 KOG0737 AAA+-type ATPase [Post 94.1 0.11 2.3E-06 49.6 5.9 57 97-153 87-144 (386)
371 cd01130 VirB11-like_ATPase Typ 94.0 0.17 3.6E-06 44.2 6.6 38 113-152 3-41 (186)
372 COG4098 comFA Superfamily II D 94.0 0.53 1.1E-05 44.6 10.0 83 172-260 304-388 (441)
373 PRK11034 clpA ATP-dependent Cl 94.0 0.52 1.1E-05 50.2 11.3 44 247-290 280-327 (758)
374 PRK14963 DNA polymerase III su 94.0 0.26 5.7E-06 50.0 8.8 23 138-161 38-60 (504)
375 PRK05636 replicative DNA helic 93.9 0.41 8.8E-06 48.6 10.0 137 138-284 267-423 (505)
376 PRK09112 DNA polymerase III su 93.9 0.62 1.3E-05 45.1 10.8 41 243-284 139-179 (351)
377 PRK09165 replicative DNA helic 93.9 0.56 1.2E-05 47.6 11.0 146 137-285 218-392 (497)
378 PRK14965 DNA polymerase III su 93.8 0.3 6.4E-06 50.6 9.0 40 243-283 117-156 (576)
379 COG3973 Superfamily I DNA and 93.8 0.43 9.2E-06 48.5 9.6 89 107-198 191-285 (747)
380 PF05876 Terminase_GpA: Phage 93.8 0.14 2.9E-06 52.8 6.5 154 121-289 16-182 (557)
381 PRK08451 DNA polymerase III su 93.8 0.49 1.1E-05 48.2 10.3 40 243-283 115-154 (535)
382 KOG0733 Nuclear AAA ATPase (VC 93.7 0.34 7.4E-06 49.2 8.8 161 93-306 181-358 (802)
383 PRK14950 DNA polymerase III su 93.7 0.89 1.9E-05 47.2 12.4 19 137-155 39-57 (585)
384 PRK06090 DNA polymerase III su 93.7 0.49 1.1E-05 45.0 9.6 40 121-161 3-49 (319)
385 PRK14951 DNA polymerase III su 93.7 0.48 1E-05 49.2 10.2 42 244-287 123-164 (618)
386 COG2109 BtuR ATP:corrinoid ade 93.6 1.3 2.9E-05 38.4 11.1 142 139-296 31-175 (198)
387 PRK07471 DNA polymerase III su 93.6 0.65 1.4E-05 45.2 10.5 42 243-285 139-180 (365)
388 PF03237 Terminase_6: Terminas 93.6 1.8 3.9E-05 41.4 13.7 143 140-301 1-154 (384)
389 PRK05896 DNA polymerase III su 93.6 0.34 7.4E-06 49.9 8.8 19 137-155 39-57 (605)
390 TIGR01243 CDC48 AAA family ATP 93.5 0.7 1.5E-05 49.4 11.5 56 97-153 173-229 (733)
391 TIGR03878 thermo_KaiC_2 KaiC d 93.5 1.8 3.9E-05 39.9 12.9 37 136-181 36-72 (259)
392 cd01126 TraG_VirD4 The TraG/Tr 93.5 0.06 1.3E-06 52.8 3.1 49 138-197 1-49 (384)
393 PRK14954 DNA polymerase III su 93.4 1 2.2E-05 47.0 12.1 61 242-307 124-184 (620)
394 PRK05563 DNA polymerase III su 93.4 0.65 1.4E-05 47.9 10.7 20 137-156 39-58 (559)
395 PRK07940 DNA polymerase III su 93.4 0.77 1.7E-05 45.1 10.7 45 243-289 115-159 (394)
396 KOG1016 Predicted DNA helicase 93.4 1.2 2.6E-05 46.6 12.0 177 104-290 245-477 (1387)
397 PRK14959 DNA polymerase III su 93.4 0.35 7.5E-06 50.0 8.5 20 137-156 39-58 (624)
398 PRK14962 DNA polymerase III su 93.4 0.3 6.5E-06 49.2 7.9 18 138-155 38-55 (472)
399 PRK09354 recA recombinase A; P 93.3 0.29 6.4E-06 47.0 7.5 43 136-187 60-102 (349)
400 PF01443 Viral_helicase1: Vira 93.3 0.11 2.3E-06 46.9 4.3 14 139-152 1-14 (234)
401 TIGR02012 tigrfam_recA protein 93.2 0.32 6.8E-06 46.3 7.5 43 136-187 55-97 (321)
402 PF02534 T4SS-DNA_transf: Type 93.2 0.12 2.5E-06 52.2 4.8 50 137-197 45-94 (469)
403 TIGR00767 rho transcription te 93.1 0.31 6.7E-06 47.6 7.2 21 133-153 165-185 (415)
404 PRK14955 DNA polymerase III su 93.1 0.74 1.6E-05 45.3 10.1 19 138-156 40-58 (397)
405 cd03239 ABC_SMC_head The struc 92.9 0.24 5.2E-06 43.0 5.7 41 244-284 115-156 (178)
406 PRK07993 DNA polymerase III su 92.9 0.49 1.1E-05 45.4 8.3 39 122-161 3-48 (334)
407 PRK07133 DNA polymerase III su 92.8 0.7 1.5E-05 48.7 9.9 40 243-283 116-155 (725)
408 KOG2028 ATPase related to the 92.8 0.44 9.5E-06 45.6 7.5 49 138-195 164-212 (554)
409 TIGR02639 ClpA ATP-dependent C 92.7 1.3 2.8E-05 47.3 12.1 17 137-153 204-220 (731)
410 PRK06647 DNA polymerase III su 92.7 1.2 2.5E-05 46.0 11.3 23 138-161 40-62 (563)
411 PRK06321 replicative DNA helic 92.7 1.7 3.6E-05 43.9 12.2 146 129-285 215-388 (472)
412 TIGR00635 ruvB Holliday juncti 92.7 0.27 5.9E-06 46.3 6.4 17 137-153 31-47 (305)
413 TIGR03819 heli_sec_ATPase heli 92.7 0.31 6.7E-06 46.9 6.7 63 111-185 154-217 (340)
414 COG2804 PulE Type II secretory 92.6 0.26 5.5E-06 49.2 6.0 38 123-161 243-282 (500)
415 TIGR02858 spore_III_AA stage I 92.6 0.79 1.7E-05 42.6 9.0 16 137-152 112-127 (270)
416 COG1485 Predicted ATPase [Gene 92.5 4.1 9E-05 39.0 13.6 108 137-289 66-174 (367)
417 TIGR00643 recG ATP-dependent D 92.5 1.1 2.4E-05 47.0 10.9 79 172-256 447-537 (630)
418 PRK13897 type IV secretion sys 92.4 0.17 3.6E-06 52.4 4.6 56 137-205 159-214 (606)
419 cd00983 recA RecA is a bacter 92.3 0.37 8E-06 45.9 6.6 43 136-187 55-97 (325)
420 PRK10865 protein disaggregatio 92.3 0.79 1.7E-05 49.8 9.9 17 137-153 200-216 (857)
421 PHA00012 I assembly protein 92.3 1.6 3.5E-05 41.4 10.6 54 243-297 79-138 (361)
422 KOG0331 ATP-dependent RNA heli 92.3 0.81 1.8E-05 46.1 9.2 73 171-251 339-415 (519)
423 TIGR00763 lon ATP-dependent pr 92.3 0.67 1.5E-05 49.8 9.3 18 136-153 347-364 (775)
424 TIGR03346 chaperone_ClpB ATP-d 92.2 0.83 1.8E-05 49.6 9.9 17 137-153 195-211 (852)
425 PRK05595 replicative DNA helic 92.2 0.47 1E-05 47.5 7.5 139 137-285 202-360 (444)
426 TIGR03880 KaiC_arch_3 KaiC dom 92.1 1.1 2.4E-05 40.2 9.3 52 136-197 16-67 (224)
427 TIGR02868 CydC thiol reductant 92.1 0.37 8.1E-06 49.3 6.8 40 243-282 486-525 (529)
428 TIGR02688 conserved hypothetic 92.1 0.93 2E-05 44.6 9.1 47 108-154 173-227 (449)
429 PF05707 Zot: Zonular occluden 92.1 0.71 1.5E-05 40.5 7.7 51 245-296 79-135 (193)
430 cd01129 PulE-GspE PulE/GspE Th 92.1 0.53 1.1E-05 43.6 7.2 44 114-161 59-104 (264)
431 COG1221 PspF Transcriptional r 92.0 1.1 2.3E-05 43.9 9.5 137 134-308 99-248 (403)
432 PRK07773 replicative DNA helic 92.0 0.95 2.1E-05 49.4 10.1 137 138-285 219-376 (886)
433 KOG0741 AAA+-type ATPase [Post 92.0 3.6 7.7E-05 41.5 12.9 51 103-153 493-555 (744)
434 TIGR00595 priA primosomal prot 92.0 2.9 6.3E-05 42.6 13.0 98 186-289 271-384 (505)
435 TIGR02525 plasmid_TraJ plasmid 91.9 0.6 1.3E-05 45.4 7.7 27 135-162 148-174 (372)
436 PRK10917 ATP-dependent DNA hel 91.9 1.5 3.2E-05 46.5 11.2 79 172-256 470-560 (681)
437 TIGR02397 dnaX_nterm DNA polym 91.9 1.4 3.1E-05 42.3 10.4 24 137-161 37-60 (355)
438 COG4626 Phage terminase-like p 91.9 1.4 2.9E-05 44.6 10.2 149 120-284 60-223 (546)
439 KOG0734 AAA+-type ATPase conta 91.9 1.6 3.4E-05 44.0 10.4 61 246-306 397-468 (752)
440 TIGR03345 VI_ClpV1 type VI sec 91.9 1.8 3.8E-05 47.0 11.9 28 126-153 192-225 (852)
441 cd00079 HELICc Helicase superf 91.8 0.25 5.4E-06 39.6 4.3 44 341-384 39-82 (131)
442 COG0630 VirB11 Type IV secreto 91.8 0.45 9.8E-06 45.2 6.5 62 112-185 120-182 (312)
443 COG1132 MdlB ABC-type multidru 91.8 0.57 1.2E-05 48.4 7.8 39 243-281 481-519 (567)
444 TIGR03743 SXT_TraD conjugative 91.7 0.73 1.6E-05 48.2 8.5 53 137-198 177-231 (634)
445 TIGR02655 circ_KaiC circadian 91.7 0.69 1.5E-05 46.8 8.2 60 128-197 250-314 (484)
446 COG3972 Superfamily I DNA and 91.7 0.88 1.9E-05 45.2 8.3 80 109-197 151-230 (660)
447 PF00437 T2SE: Type II/IV secr 91.6 0.17 3.6E-06 47.0 3.4 52 125-185 115-167 (270)
448 PRK14953 DNA polymerase III su 91.6 1.4 2.9E-05 44.7 10.0 17 139-155 41-57 (486)
449 COG2255 RuvB Holliday junction 91.5 0.65 1.4E-05 43.0 6.9 17 137-153 53-69 (332)
450 PRK09376 rho transcription ter 91.5 2.3 5E-05 41.6 11.0 28 133-161 166-193 (416)
451 PRK07399 DNA polymerase III su 91.5 2.1 4.6E-05 40.7 10.8 61 243-309 122-182 (314)
452 KOG1969 DNA replication checkp 91.4 2.4 5.3E-05 44.2 11.4 17 137-153 327-343 (877)
453 PRK08058 DNA polymerase III su 91.4 1.7 3.7E-05 41.7 10.1 41 243-284 108-148 (329)
454 COG0467 RAD55 RecA-superfamily 91.3 0.3 6.4E-06 45.1 4.7 55 135-199 22-76 (260)
455 COG0552 FtsY Signal recognitio 91.3 9.6 0.00021 36.3 14.5 131 138-298 141-281 (340)
456 COG1219 ClpX ATP-dependent pro 91.3 0.13 2.9E-06 48.1 2.3 17 137-153 98-114 (408)
457 PRK04537 ATP-dependent RNA hel 91.2 2.1 4.5E-05 44.4 11.2 76 172-255 256-335 (572)
458 PRK13764 ATPase; Provisional 91.2 0.54 1.2E-05 48.5 6.8 26 135-161 256-281 (602)
459 PF06733 DEAD_2: DEAD_2; Inte 91.2 0.13 2.9E-06 44.3 2.1 46 215-260 113-160 (174)
460 COG1702 PhoH Phosphate starvat 91.1 0.57 1.2E-05 44.4 6.2 45 119-163 126-170 (348)
461 TIGR03754 conj_TOL_TraD conjug 91.0 1 2.2E-05 46.9 8.6 54 136-198 180-235 (643)
462 CHL00095 clpC Clp protease ATP 91.0 1.7 3.7E-05 47.1 10.7 17 137-153 201-217 (821)
463 PRK14970 DNA polymerase III su 91.0 2.6 5.7E-05 40.9 11.2 17 137-153 40-56 (367)
464 TIGR01243 CDC48 AAA family ATP 91.0 0.76 1.7E-05 49.1 8.0 53 98-153 449-504 (733)
465 PRK14948 DNA polymerase III su 90.9 1.1 2.4E-05 46.8 8.8 18 137-154 39-56 (620)
466 KOG2543 Origin recognition com 90.9 5.5 0.00012 38.6 12.6 155 122-308 10-179 (438)
467 COG4185 Uncharacterized protei 90.8 0.68 1.5E-05 39.2 5.8 38 139-189 5-42 (187)
468 PRK07413 hypothetical protein; 90.8 3.2 6.9E-05 40.4 11.2 53 243-295 303-358 (382)
469 PRK10436 hypothetical protein; 90.8 0.7 1.5E-05 46.4 7.0 44 114-161 197-242 (462)
470 PF12846 AAA_10: AAA-like doma 90.7 0.4 8.8E-06 44.6 5.1 42 137-187 2-43 (304)
471 TIGR02533 type_II_gspE general 90.7 0.63 1.4E-05 47.1 6.7 45 113-161 220-266 (486)
472 TIGR03345 VI_ClpV1 type VI sec 90.7 1.3 2.7E-05 48.2 9.3 16 138-153 598-613 (852)
473 TIGR00631 uvrb excinuclease AB 90.5 5 0.00011 42.3 13.3 78 172-257 441-522 (655)
474 PHA02542 41 41 helicase; Provi 90.5 1.7 3.7E-05 43.8 9.5 41 245-285 301-353 (473)
475 CHL00176 ftsH cell division pr 90.5 1.4 3.1E-05 46.1 9.2 18 136-153 216-233 (638)
476 PRK13850 type IV secretion sys 90.3 0.35 7.6E-06 50.7 4.6 50 137-197 140-189 (670)
477 PF13481 AAA_25: AAA domain; P 90.2 2.3 5E-05 36.8 9.2 62 135-198 31-94 (193)
478 KOG2004 Mitochondrial ATP-depe 90.2 2.7 5.8E-05 43.8 10.5 111 121-273 415-533 (906)
479 PHA02535 P terminase ATPase su 90.2 2.9 6.4E-05 42.8 10.8 86 104-197 121-206 (581)
480 TIGR02524 dot_icm_DotB Dot/Icm 90.1 0.51 1.1E-05 45.7 5.3 26 135-161 133-158 (358)
481 cd01131 PilT Pilus retraction 90.1 0.52 1.1E-05 41.6 4.9 39 139-185 4-42 (198)
482 PRK14971 DNA polymerase III su 90.0 2.8 6E-05 43.8 10.8 42 242-285 118-159 (614)
483 TIGR02788 VirB11 P-type DNA tr 89.9 0.55 1.2E-05 44.5 5.2 20 133-152 141-160 (308)
484 TIGR02538 type_IV_pilB type IV 89.9 0.57 1.2E-05 48.3 5.7 45 113-161 294-340 (564)
485 KOG0058 Peptide exporter, ABC 89.9 0.91 2E-05 47.1 7.0 142 133-284 491-660 (716)
486 PRK06305 DNA polymerase III su 89.9 1.6 3.5E-05 43.8 8.7 39 244-283 120-158 (451)
487 PRK12608 transcription termina 89.8 1.1 2.4E-05 43.4 7.2 37 124-161 118-157 (380)
488 COG1200 RecG RecG-like helicas 89.8 1.2 2.5E-05 46.1 7.6 79 172-256 472-562 (677)
489 KOG0333 U5 snRNP-like RNA heli 89.7 1.9 4.2E-05 43.1 8.8 71 172-250 516-590 (673)
490 PRK10787 DNA-binding ATP-depen 89.6 5.7 0.00012 42.7 13.0 30 228-260 402-431 (784)
491 TIGR02640 gas_vesic_GvpN gas v 89.5 0.38 8.2E-06 44.5 3.7 24 130-153 15-38 (262)
492 cd03221 ABCF_EF-3 ABCF_EF-3 E 89.4 1.3 2.8E-05 36.8 6.6 31 243-273 86-116 (144)
493 KOG0732 AAA+-type ATPase conta 89.4 0.88 1.9E-05 49.4 6.7 55 98-153 261-316 (1080)
494 cd01393 recA_like RecA is a b 89.2 1.3 2.8E-05 39.6 7.0 45 136-183 19-63 (226)
495 TIGR03158 cas3_cyano CRISPR-as 88.9 2.6 5.7E-05 40.8 9.2 72 172-252 271-342 (357)
496 PRK13880 conjugal transfer cou 88.8 0.42 9.1E-06 50.0 3.8 46 137-193 176-221 (636)
497 PF01637 Arch_ATPase: Archaeal 88.7 1.8 3.9E-05 38.4 7.5 40 247-286 120-165 (234)
498 PF10412 TrwB_AAD_bind: Type I 88.7 0.6 1.3E-05 45.8 4.6 48 134-190 13-60 (386)
499 TIGR01420 pilT_fam pilus retra 88.6 0.74 1.6E-05 44.4 5.2 43 135-185 121-163 (343)
500 TIGR02767 TraG-Ti Ti-type conj 88.5 0.63 1.4E-05 48.4 4.8 57 137-205 212-268 (623)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-50 Score=393.82 Aligned_cols=284 Identities=36% Similarity=0.551 Sum_probs=258.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|+.+++++++..+|...||..|||+|.++||.++.|+|++..+.||||||++|++|++.++..........++|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999875555556779999999
Q ss_pred ecCHHHHHHHHHHHHHhCCCCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+||||||.|+.+.+.++...+. ..|++||.+...+.+.+.+|++|+|+|||+|.+++..+.+.++++.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 9999999999999999987555 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHC-CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH
Q 016712 258 LSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (384)
+++||.++++.|+..+ ++..|++++|||||.+++.++..|+.+|..|.+....+.....++.+....+. ...|...+.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHH
Confidence 9999999999999999 56679999999999999999999999999999876656677888888888776 444433332
Q ss_pred -----------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 -----------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 -----------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++.++.+.++...+...++.+.++||+.++.||+.+|+.|++|++.|+
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vL 395 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVL 395 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceE
Confidence 233467778888888888999999999999999999999999998874
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-49 Score=361.05 Aligned_cols=305 Identities=29% Similarity=0.432 Sum_probs=267.2
Q ss_pred ccccHHHHhhhhccccccccCC------CCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcc
Q 016712 71 FKSSIAWQHAQSAVDDYVAYDD------SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRAR 144 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~ 144 (384)
...+..|++.....+.+..-.+ ...+...+|.++++.+.+++++++.||..||++|+++||.++.|+|+|+.+.
T Consensus 27 ~las~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAe 106 (476)
T KOG0330|consen 27 SLASEGWKKNEESGDKFILSAANRNEEMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAE 106 (476)
T ss_pred cccchhhhhhhhhccchhhhhhhhcchhhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEec
Confidence 3456788877666555543221 2244567899999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCC
Q 016712 145 TGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGV 222 (384)
Q Consensus 145 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~ 222 (384)
||||||.+|++|+++++... ...++++||+||||||.|+.+.|..++. ++.+.++.||.+...+...+.+.+
T Consensus 107 TGSGKT~afaLPIl~~LL~~------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkP 180 (476)
T KOG0330|consen 107 TGSGKTGAFALPILQRLLQE------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKP 180 (476)
T ss_pred cCCCchhhhHHHHHHHHHcC------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCC
Confidence 99999999999999999873 2358899999999999999999999976 566778999999999999999999
Q ss_pred CEEEECchhHHHHHH-ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCC
Q 016712 223 DAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNP 301 (384)
Q Consensus 223 ~IlV~Tp~~l~~~l~-~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 301 (384)
||+|+|||+|.+++. .+.+.++.++++|+||||+++++.|...+..|++.+|..+|+++||||+|..+.++...-+.+|
T Consensus 181 hilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p 260 (476)
T KOG0330|consen 181 HILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNP 260 (476)
T ss_pred CEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCC
Confidence 999999999999998 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChh
Q 016712 302 LTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHK 367 (384)
Q Consensus 302 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~ 367 (384)
+.|.+. ..+..-+.+.++|..... .+|...+++.+. .....++..|+.+|+.+..+||+|+++
T Consensus 261 ~~v~~s--~ky~tv~~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~ 337 (476)
T KOG0330|consen 261 VKVAVS--SKYQTVDHLKQTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQS 337 (476)
T ss_pred eEEecc--chhcchHHhhhheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHH
Confidence 999874 445677778888888864 455555555444 556688889999999999999999999
Q ss_pred hhhchhhhhhcCCcccC
Q 016712 368 ARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 368 eR~~il~~F~~~~~~V~ 384 (384)
.|...+++|++|..+|+
T Consensus 338 ~Rlg~l~~Fk~~~r~iL 354 (476)
T KOG0330|consen 338 KRLGALNKFKAGARSIL 354 (476)
T ss_pred HHHHHHHHHhccCCcEE
Confidence 99999999999998875
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-47 Score=382.46 Aligned_cols=282 Identities=38% Similarity=0.582 Sum_probs=254.0
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.+++++.++||..|||+|..+||.++.|+|++++++||||||++|++|+++.+... .......+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----~~~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----VERKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc----cccCCCceEE
Confidence 679999999999999999999999999999999999999999999999999999999999997532 0111111999
Q ss_pred EecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
++||||||.|+++.+..+.. ++.+.+++||.+...+...+..++|||||||+++++++.++.+.+.++.++|+||||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 99999999999999999875 567889999999999999999899999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
+|++.||..++..|+..++.+.|+++||||+|+.+..++..++.+|..|.+...........+.++++.+...+.|.+.+
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L 264 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988864444457888999999998655577766
Q ss_pred HHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+ ...++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 4433 377788999999999999999999999999999999999999875
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-46 Score=331.01 Aligned_cols=281 Identities=29% Similarity=0.448 Sum_probs=256.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.....|+++|+.+++++++...||++|+.+|+.||+.+++|+|++.++..|+|||.+|-+.+++.+.- ..+..|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ 97 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQ 97 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceee
Confidence 34567999999999999999999999999999999999999999999999999999998888877632 134578
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++|||||+.|+.+.+..++.. +.+..+.||.+..+..+.+..|.+++.||||++.++++++.+..+.++++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 999999999999999999999864 455567899999999999999999999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|.|++.||..++..+++.+|+++|++++|||+|.++.++...|+.+|+.|-+. .++..++++++|++.++.++||++
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHh
Confidence 999999999999999999999999999999999999999999999999999774 556889999999999999999999
Q ss_pred HHH--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NAL--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+. ++.+..+.-+.+.++..++.|...||+|.++||+++|++|+.|+.+|+
T Consensus 256 tLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 256 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred HHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 773 345577778888888899999999999999999999999999998774
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.6e-44 Score=363.13 Aligned_cols=288 Identities=29% Similarity=0.409 Sum_probs=244.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.+.+...|+++++++.++++|.++||.+|||+|.++||.+++|+|+|+++|||||||++|++|++.++..... .....+
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~g 203 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDG 203 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCC
Confidence 4456678999999999999999999999999999999999999999999999999999999999988865321 112357
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
+++|||+||++||.|+.+.+++++. ++.+.+++|+.....+...+..+++|+|+||++|.+++..+...++++++|||
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 8999999999999999999999875 46678889999888888888899999999999999999988889999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcC-CCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
||||+|++++|..++..++..+++++|+++||||+|+.+..++..++. +++.+.+.. .+......+.+.+..... ..
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~-~~l~~~~~i~q~~~~~~~-~~ 361 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGS-LDLTACHNIKQEVFVVEE-HE 361 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECC-CccccCCCeeEEEEEEec-hh
Confidence 999999999999999999999999999999999999999999999886 577776532 222334556666555442 33
Q ss_pred hHHHHH----------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENAL----------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~----------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|...+. ++..+.++.++..|...++.+..+||+|++++|++++++|++|+++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~IL 431 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIM 431 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEE
Confidence 333222 223477778888888889999999999999999999999999998874
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-46 Score=351.59 Aligned_cols=281 Identities=30% Similarity=0.421 Sum_probs=245.5
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|.++.|+-++++++..+||..|||+|..+||..+-|+|++.|+.||||||.+|.+|++.+++-...+ -...+|||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLV 257 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLV 257 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999864333 33568999
Q ss_pred EecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDEah 255 (384)
|+|||+|+.|++...+++.. ++.++.+.||.+...+...+..++||||+|||+|.+++.+. .+++.++..+|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999888753 67788899999999999999999999999999999999774 6789999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec-cchhhHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS-MNMQKVEN 334 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~k~~~ 334 (384)
+|++.||..++.+|++.+++++|+++||||++..+..++..-++.|+.|-+.+.. .....+.+.++... ..+.-++.
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~--~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK--DTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc--ccchhhhHHHheeccccccccHH
Confidence 9999999999999999999999999999999999999999999999999875433 44555666655444 23333444
Q ss_pred HHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 335 ALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 335 l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+. +.+.++..+|--+|+.++-+||.|+++||-+.+++|+++++||+
T Consensus 416 ~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvL 480 (691)
T KOG0338|consen 416 MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVL 480 (691)
T ss_pred HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEE
Confidence 443332 56667777777889999999999999999999999999999985
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.6e-44 Score=355.29 Aligned_cols=276 Identities=30% Similarity=0.511 Sum_probs=243.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|+++++++.++++|.++||..|||+|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..++++||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~li 77 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALV 77 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEE
Confidence 469999999999999999999999999999999999999999999999999999999999987431 23568999
Q ss_pred EecCHHHHHHHHHHHHHhC---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
++||++||.|+.+.++.+. .++.+..++||.+...+...+..+++|+|+||+++.+++.++.+.++++++|||||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999999998865 3577888999999988888888899999999999999999988899999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
+|++++|...+..++..++...|+++||||+|+.+..+...++.+|..+.+.... ....+.++++..... .|.+.+
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~-~k~~~l 233 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPD-ERLPAL 233 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999988875432 234466666666533 354444
Q ss_pred HH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.. +..+.++.++..|...+..+..+||+|++++|++++++|++|+++|+
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vL 296 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVL 296 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 32 33477889999999999999999999999999999999999999874
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-43 Score=349.40 Aligned_cols=285 Identities=31% Similarity=0.447 Sum_probs=242.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~ 175 (384)
+...|+++++++.++++|.++||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+....... ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 457899999999999999999999999999999999999999999999999999999999999987543211 1134689
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+|||+||++||.|+++.+..+.. ++.+..++||.....+...+..+++|+||||++|.+++..+.+.++++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999988764 5677888999888888888888899999999999999998889999999999999
Q ss_pred cccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh
Q 016712 254 ADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k 331 (384)
||++++++|..++..++..++. ..+.++||||++..+..+...++.+|..+.+.+.. .....+.+.+.... ...|
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~--~~~~~i~~~~~~~~-~~~k 242 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KTGHRIKEELFYPS-NEEK 242 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC--cCCCceeEEEEeCC-HHHH
Confidence 9999999999999999999974 56789999999999999999999999888774332 33445555554443 3445
Q ss_pred HHHHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+... ..+.++.++..|...|+.+..+||+|++++|.+++++|++|+++|+
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vL 309 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDIL 309 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEE
Confidence 4444332 2366788888999999999999999999999999999999999875
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.9e-43 Score=352.16 Aligned_cols=282 Identities=32% Similarity=0.512 Sum_probs=240.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|++++|++.++++|.++||..|||+|.++|+.++.|+|+++++|||+|||++|++|+++.+.............++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998653322122234689999
Q ss_pred ecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+||++||.|+.+.++.+.. ++.+..++|+.....+...+..+++|+|+||++|++++....+.++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998765 45667788998888887778888999999999999999888889999999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH-
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL- 336 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~- 336 (384)
++++|...+..++..++...|+++||||+++.+..+...++.++..+.+... ......+.+++.... ...+.+.+.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~-~~~k~~~l~~ 238 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR--NTASEQVTQHVHFVD-KKRKRELLSQ 238 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc--cccccceeEEEEEcC-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876432 233445666655443 233333322
Q ss_pred -------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 -------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 -------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+.++.++..|...++.+..+||+|++++|.+++++|++|+++|+
T Consensus 239 l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 299 (456)
T PRK10590 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 (456)
T ss_pred HHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 233466888999999999999999999999999999999999999875
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-42 Score=349.02 Aligned_cols=287 Identities=28% Similarity=0.407 Sum_probs=239.7
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGR 172 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~ 172 (384)
.+.+..+|+++++++.++++|.+.||..|||+|.++||.++.|+|+++++|||||||++|++|++.++....... ....
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 346778999999999999999999999999999999999999999999999999999999999999886432211 1235
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
++++|||+||++||.|+++.++.+..+ +.+.+++||.....+...+..+++|+|+||++|.+++..+.+.++++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 789999999999999999999988754 456778898888888888888999999999999999998888999999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
|||||+|+++||...+..++..++ +.|+++||||+++.+..++..++.++..+.+... ......+.+..+.+... .
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~--~~~~~~v~q~~~~~~~~-~ 351 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP--NRPNKAVKQLAIWVETK-Q 351 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC--CCCCcceeEEEEeccch-h
Confidence 999999999999999999999885 6899999999999999999999999988876432 23344556666555432 2
Q ss_pred hHHHHHHH----------------HhHhHHHHHHHHHh-hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENALFS----------------LKQNVMQTAWLMLW-LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~~~----------------~~~~~~~~~~~l~~-~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|...++.. ....++.++..+.. .++.+..+||+|+.++|++++++|++|+++|+
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~IL 422 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVI 422 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEE
Confidence 32222222 22455666666654 58999999999999999999999999999875
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.7e-43 Score=356.88 Aligned_cols=278 Identities=35% Similarity=0.525 Sum_probs=242.6
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|++++|++.++++|.++||.+|||+|.++|+.++.|+|+|++||||+|||++|++|+++.+.. ...++++|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~------~~~~~~~L 78 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP------ELKAPQIL 78 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh------ccCCCeEE
Confidence 346999999999999999999999999999999999999999999999999999999999988743 12467899
Q ss_pred EEecCHHHHHHHHHHHHHhC---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||+||++||.|+++.+..+. +++.+..++|+.....+...+..+++|+|+||+++.+++.++.+.++++++||||||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEA 158 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccH
Confidence 99999999999999888764 467888899999888888888889999999999999999998889999999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHH
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN 334 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 334 (384)
|+|++++|...+..++..++...|+++||||+|+.+..+...|+.+|..|.+... ......+.+.++... ...|.+.
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~--~~~~~~i~q~~~~v~-~~~k~~~ 235 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS--VTTRPDISQSYWTVW-GMRKNEA 235 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc--cccCCceEEEEEEec-hhhHHHH
Confidence 9999999999999999999999999999999999999999999999998876432 233445666665554 2334333
Q ss_pred HH--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 335 AL--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 335 l~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+. ++....+..++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~IL 299 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 32 334477888999999999999999999999999999999999999875
No 12
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-44 Score=331.65 Aligned_cols=334 Identities=29% Similarity=0.411 Sum_probs=275.4
Q ss_pred ccccccCCCCcccccccCCCcCccc---cHHHHhhhhc--cccccccCC-CCCCCCCCccC-CCCCHHHHHHHHHcCCCC
Q 016712 49 DIIKSRFSAGTREFHAISRPLDFKS---SIAWQHAQSA--VDDYVAYDD-SSKDEGLDISK-LDISQDIVAALARRGISK 121 (384)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~-~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~ 121 (384)
.+.+.+++|+.+-++-++....-++ -..|+..... .++...-.. ..+.+..+|++ +.-.+++++++.+.||.+
T Consensus 163 ~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqK 242 (629)
T KOG0336|consen 163 KFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQK 242 (629)
T ss_pred hcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCC
Confidence 3447788999999887765444333 3456654322 222222111 23455667765 567899999999999999
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh-CCCC
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-APSL 200 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~-~~~~ 200 (384)
|||+|.++||.+++|.|++.++.||+|||++|++|.+.++...........++.+|+++||++|+.|+.-+..++ +.++
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ 322 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGL 322 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCc
Confidence 999999999999999999999999999999999999998877665556677899999999999999998877665 5688
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEE
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l 280 (384)
+.+|++|+.+..++.+.+..+.+|+|+||++|.++...+.+++..+.++|+||||+|+++||.+++.+|+--+++++|++
T Consensus 323 ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv 402 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV 402 (629)
T ss_pred ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHh---------------HhHHH
Q 016712 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK---------------QNVMQ 345 (384)
Q Consensus 281 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~---------------~~~~~ 345 (384)
+.|||||+.++.++..|+++|..+.+ +..+...-..+++.++. ....+|.+.+-.... -.+..
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~v-GsLdL~a~~sVkQ~i~v-~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~ 480 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYV-GSLDLVAVKSVKQNIIV-TTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADH 480 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEe-cccceeeeeeeeeeEEe-cccHHHHHHHHHHHHhcCCCceEEEEEechhhhhh
Confidence 99999999999999999999998854 45555556667777744 446677765433222 23345
Q ss_pred HHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 346 TAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 346 ~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...|.-.|+.+..+||+-++.+|++.+++|+.|++.|+
T Consensus 481 LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrIL 519 (629)
T KOG0336|consen 481 LSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRIL 519 (629)
T ss_pred ccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEE
Confidence 566677779999999999999999999999999999875
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-42 Score=352.23 Aligned_cols=283 Identities=30% Similarity=0.461 Sum_probs=239.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~~l 177 (384)
.+|++++|++.++++|.++||..|||+|.++||.+++|+|+++++|||||||++|++|+++.+....... ....++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999886532111 112357999
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDEa 254 (384)
||+||++|+.|+++.+..++. ++.+..++|+.....+...+..+++|+|+||++|++++.++ .+.+.++++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999999875 45677899999888888888888999999999999998765 467889999999999
Q ss_pred ccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 255 DQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
|+|++++|...+..++..++. ..|+++||||++..+..+...++.++..+.+... ......+.++++... ...|.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~--~~~~~~i~q~~~~~~-~~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE--TITAARVRQRIYFPA-DEEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc--cccccceeEEEEecC-HHHHH
Confidence 999999999999999999986 7899999999999999999999999877765322 233445556555443 34444
Q ss_pred HHHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 333 ENALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 333 ~~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..++. +..+.++.++..|...++.+..+||+|++++|++++++|++|+++|+
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 44432 23467888999999999999999999999999999999999999875
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.8e-42 Score=341.54 Aligned_cols=281 Identities=29% Similarity=0.457 Sum_probs=243.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|+++++++.+++.|.++||.+|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+...... ...++++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil 79 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILIL 79 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999998753221 2235789999
Q ss_pred ecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 180 APTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
+||++|+.|+++.+..+.. ++.+..++|+.....+...+..+++|+|+||++|++++..+.+.+.++++|||||||+|
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999998764 56778889999888887778888999999999999999988888999999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCCh-hHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (384)
++++|...+..+...++...|+++||||++. .+..+...++.++..+...+. ......+.+++........+.+.+.
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999989999999999985 478888888899998877533 2345567777776655555655553
Q ss_pred HH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 FS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 ~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.. ..+.++.++..|...++.+..+||+|++++|.+++++|++|+++|+
T Consensus 238 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vL 299 (434)
T PRK11192 238 HLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVL 299 (434)
T ss_pred HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEE
Confidence 33 2367889999999999999999999999999999999999999875
No 15
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-43 Score=331.98 Aligned_cols=288 Identities=30% Similarity=0.420 Sum_probs=264.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.+.+...|+.++++..|+.+..+.-|.+|||+|.+++|..+.|+|++..+.||||||-+|++|++.++++..+-. .+.+
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-~g~g 296 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-PGEG 296 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc-CCCC
Confidence 455678899999999999999999999999999999999999999999999999999999999999997654432 3579
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
|..||++||++||.|++.+++++++ +++++++|||.+..++...+..++.||||||++|++++..+..++.++.++||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 9999999999999999999999876 67899999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k 331 (384)
||+++|++.||..+++.|...+++++|+|+||||++..+..+++.+|.+|+.+... +-......+.|.+..+...+.|
T Consensus 377 DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~~K 454 (731)
T KOG0339|consen 377 DEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEEKK 454 (731)
T ss_pred echhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcHHH
Confidence 99999999999999999999999999999999999999999999999999988653 2235567788888899999999
Q ss_pred HHHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+++..+. ...++++..|...++.|..+||+|.+.+|.+++.+|+.++.+|+
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vl 522 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVL 522 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceE
Confidence 999987766 55668888888899999999999999999999999999988774
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-43 Score=336.72 Aligned_cols=287 Identities=26% Similarity=0.415 Sum_probs=251.7
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccC
Q 016712 90 YDDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (384)
Q Consensus 90 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 169 (384)
|+.........|++|+|+....++|.+.+|..+|.+|+.+||..+.|+|+|..+.||||||++|++|+++++... +..
T Consensus 60 y~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--kWs 137 (758)
T KOG0343|consen 60 YAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--KWS 137 (758)
T ss_pred HHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc--CCC
Confidence 555555667789999999999999999999999999999999999999999999999999999999999999654 334
Q ss_pred CCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCc
Q 016712 170 RGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEV 246 (384)
Q Consensus 170 ~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l 246 (384)
...|.-+|||+|||+||.|+++.+.+.+. .+..+.+.||.....+...+.+ ++|+|||||+|+.++..+ .+...++
T Consensus 138 ~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 138 PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCCCCcc
Confidence 45677899999999999999999999875 5677889999987777666554 899999999999999775 5678899
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
.++|+||||+|+++||...+..|+..+|+.+|+++||||.+..+..+++..+.+|.+|.+..........++.|+|+.++
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999864444677888999999886
Q ss_pred cchhhHHHHHHHHh--------------HhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCC
Q 016712 327 MNMQKVENALFSLK--------------QNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 327 ~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.++|.+.+...+. ..+.-++..|+++ |+++..+||.|++..|-++..+|-...
T Consensus 297 -l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 297 -LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred -hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 5788887765555 4555667777765 899999999999999999999997643
No 17
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=323.63 Aligned_cols=285 Identities=26% Similarity=0.374 Sum_probs=250.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|++++|++.+++++.+.||.+||-+|+.+||.+++|+|++..|.||||||.+|++|+++.+...........++.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 36899999999999999999999999999999999999999999999999999999999999999877665666799999
Q ss_pred EEecCHHHHHHHHHHHHHhCC----CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC-CCCCCccEEEEe
Q 016712 178 VLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-LNLSEVQFVVLD 252 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~-~~~~~l~~vViD 252 (384)
||+||+|||+|+++.+.++.. .+++.-+.+..+.......+...++|+|+||++++.++..+. ..+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999888642 455555555555555556777789999999999999998877 678899999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
|||.++..||..++..+...+|+..|.++||||+..++..+.+.++++|+++.+. +.+.+..+.+.||++.+. +++|.
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~-e~el~~~dqL~Qy~v~cs-e~DKf 255 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLT-EGELPNPDQLTQYQVKCS-EEDKF 255 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEec-cccCCCcccceEEEEEec-cchhH
Confidence 9999999999999999999999999999999999999999999999999999885 334456788999999997 67777
Q ss_pred HHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 333 ENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 333 ~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..++..+. +.+-++...|...|++.+++.|.|+..-|-.+++.|..|=+|++
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Ydiv 322 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIV 322 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEE
Confidence 65544322 55667777788889999999999999999999999999998874
No 18
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.8e-43 Score=364.21 Aligned_cols=318 Identities=15% Similarity=0.141 Sum_probs=277.1
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
..|++++|-+ ++.++||.++ +.++++++++.+|++++.++.+.+. |+.+...++..|.. +..++.
T Consensus 509 ~~dkLyVPVeql~lisrY~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~---d~~~q~ 585 (1139)
T COG1197 509 GEDKLYVPVEQLHLISRYVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPP---DTEWQE 585 (1139)
T ss_pred CCCeEEEEHHHhhHHhhccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---ChHHHH
Confidence 3578999999 9999999765 5689999999999999888877665 77788889988877 899999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+.+.+....|+.|..||..++++ ||.++||+.|.|||.+++.+++.++. .|+||.|+|||+-||
T Consensus 586 ~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQVAvLVPTTlLA 656 (1139)
T COG1197 586 EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQVAVLVPTTLLA 656 (1139)
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------CCCeEEEEcccHHhH
Confidence 999987778999999999999876 69999999999999999999999984 589999999999999
Q ss_pred HHHHHHHHHhCCCCceEE--EECCCChHH---HHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 187 KQVEKEFHESAPSLDTIC--VYGGTPISH---QMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 187 ~q~~~~~~~~~~~~~~~~--~~g~~~~~~---~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
+|++++|++.+.++++.+ +..-.+.++ ....+++| .|||||| |.+.+..+.|++++++||||.|+
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqR---- 727 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQR---- 727 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhh----
Confidence 999999999999887655 333334443 34445555 8999999 88888999999999999999999
Q ss_pred ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH-----
Q 016712 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA----- 335 (384)
Q Consensus 261 ~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l----- 335 (384)
||...++-++.++.++.++.|||||.|++.+|...++++...|.++|..+.++.+.+..+......+...++..
T Consensus 728 -FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQv 806 (1139)
T COG1197 728 -FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQV 806 (1139)
T ss_pred -cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999988888777766655554444444433
Q ss_pred --HHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 --LFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 --~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.+++.+..++.+ +.++++.||+|++.+.+++|.+|++|++||+
T Consensus 807 fYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVL 859 (1139)
T COG1197 807 FYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVL 859 (1139)
T ss_pred EEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEE
Confidence 567778888999888887 8999999999999999999999999999996
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-40 Score=332.48 Aligned_cols=285 Identities=27% Similarity=0.428 Sum_probs=237.5
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc-CCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH-GRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~ 175 (384)
....|.++++++.++++|.++||..||++|.++|+.+++|+|+|+++|||||||++|++|++..+....... .....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346799999999999999999999999999999999999999999999999999999999999987532111 1122578
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+|||+||++|++|+++.++.+.. ++.+..++||.....+.+.+. .+++|+|+||++|+.++..+...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 99999999999999999998865 466777889887777666664 468999999999999998888899999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 253 EADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
|+|++++++|...+..+++.++. +.|++++|||++..+.+++..++.++..+.+.+.. .....+.++..... ..+
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~-~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--VASDTVEQHVYAVA-GSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--CCCCcccEEEEEec-chh
Confidence 99999999999999999998864 67999999999999999999999999988775332 23334444444443 233
Q ss_pred hHHHHH--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENAL--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...+. ++.++.++.++..|...++.+..+||+|+.++|++++++|++|+++|+
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 433332 233477788888888889999999999999999999999999998874
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=316.65 Aligned_cols=278 Identities=31% Similarity=0.486 Sum_probs=234.1
Q ss_pred CCccCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 99 LDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 99 ~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
..|++++ |++++++++..+||..+||.|..+||.++.++|+++.++||||||++|++|++..+.....+.... ..-+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vga 82 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGA 82 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ceeE
Confidence 3466665 559999999999999999999999999999999999999999999999999999986544332221 3469
Q ss_pred EEEecCHHHHHHHHHHHHHh---CCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHcc--CCCCCCccEEE
Q 016712 177 LVLAPTRELAKQVEKEFHES---APSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN--ALNLSEVQFVV 250 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~--~~~~~~l~~vV 250 (384)
|||+|||||+.|+.+.+..+ .+++.+.++.||.+..+....+.+ +++|+|||||+|.+++.+. .++++.+.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999887664 457888999999888888777754 7999999999999999874 44566999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 251 LDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
+||||++++.||...+..|+..+|+.+.+=+||||...++.++...+++||+.|.+...........+..+|..+. .++
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~-a~e 241 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE-ADE 241 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec-HHH
Confidence 9999999999999999999999999999999999999999999999999999998864444446677888888875 678
Q ss_pred hHHHHHHHHhH--------------hHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhc
Q 016712 331 KVENALFSLKQ--------------NVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 331 k~~~l~~~~~~--------------~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
|...+++.+.+ .++-.+..+... ...+..+||.|.+++|.+++++|++
T Consensus 242 K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 88877776653 233333333332 7789999999999999999999997
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=318.19 Aligned_cols=301 Identities=28% Similarity=0.461 Sum_probs=264.5
Q ss_pred ccHHHHhhhhcccccccc--CCCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchh
Q 016712 73 SSIAWQHAQSAVDDYVAY--DDSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT 150 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT 150 (384)
.+.+|+.......+..++ .+....++.+|+++.|..+++..+.++||++|+|+|.++||.++.|+|++..+..|+|||
T Consensus 57 ~~~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT 136 (459)
T KOG0326|consen 57 NGKDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKT 136 (459)
T ss_pred cchhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCc
Confidence 567898765444433333 345677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEEC
Q 016712 151 LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGT 228 (384)
Q Consensus 151 ~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~T 228 (384)
-+|++|+++.+.. ....-+++|++||++||.|+...++++.+. +.+.+.+||++..+..-.+..+++++|||
T Consensus 137 ~a~~IP~Lekid~------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgT 210 (459)
T KOG0326|consen 137 AAYCIPVLEKIDP------KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGT 210 (459)
T ss_pred cceechhhhhcCc------cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcC
Confidence 9999999999843 245678999999999999999999988764 55667889999999888888999999999
Q ss_pred chhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 229 PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 229 p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
||+++++...+...++++.++|+||||.+++..|...++.++..+|+++|++++|||+|-.+..+..+++.+|..|++.
T Consensus 211 PGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM- 289 (459)
T KOG0326|consen 211 PGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM- 289 (459)
T ss_pred ChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCcccccCCeEEEEEEeccchhhHHHH--------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhh
Q 016712 309 DSDQKLADGISLYSIATSMNMQKVENA--------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPF 374 (384)
Q Consensus 309 ~~~~~~~~~i~~~~~~~~~~~~k~~~l--------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~ 374 (384)
++..+.++.+||-.+. +..|..-+ +++..+.++-++..+.++|..|.++|+.|-++.|.+++.
T Consensus 290 --~eLtl~GvtQyYafV~-e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFH 366 (459)
T KOG0326|consen 290 --EELTLKGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFH 366 (459)
T ss_pred --hhhhhcchhhheeeec-hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhh
Confidence 5578899999998876 33443322 345557888888889999999999999999999999999
Q ss_pred hhhcCCccc
Q 016712 375 QLSEMDVSI 383 (384)
Q Consensus 375 ~F~~~~~~V 383 (384)
+|++|..+.
T Consensus 367 dFr~G~crn 375 (459)
T KOG0326|consen 367 DFRNGKCRN 375 (459)
T ss_pred hhhccccce
Confidence 999998653
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.1e-40 Score=323.24 Aligned_cols=279 Identities=29% Similarity=0.427 Sum_probs=239.0
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++..+.. ...++++|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~l 100 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQAL 100 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEE
Confidence 467999999999999999999999999999999999999999999999999999999999987732 12467899
Q ss_pred EEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 178 VLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
||+||++|+.|+.+.+..++.. ..+..+.|+.........+..+++|+|+||+++.+.+..+...++++++|||||+|
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999999888753 34555778877777777788889999999999999998888889999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
++.+.+|...+..+++.++++.|++++|||+|+.+..+...++.++..+.+... .....++.++++.......+...+
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD--ELTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC--CcccCCceEEEEecChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765432 234566677776665444443332
Q ss_pred H--------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 L--------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~--------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
. ++..++++.++..+...++.+..+||+|++++|++++++|++|+++|+
T Consensus 259 ~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vL 321 (401)
T PTZ00424 259 CDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 321 (401)
T ss_pred HHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 2 233467888888898889999999999999999999999999999875
No 23
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5e-41 Score=316.79 Aligned_cols=282 Identities=28% Similarity=0.456 Sum_probs=247.7
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|++..|++...+++.++||.++|++|+.+|+.++.|+|+++.|.||+|||++|++|+++.+........ .+..++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vl 158 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVL 158 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEE
Confidence 456889999999999999999999999999999999999999999999999999999999999987544432 567899
Q ss_pred EEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeC
Q 016712 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDE 253 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDE 253 (384)
||+|||+||.|++.+++++.. +..+..+.||.....+.+.+..+++|+|+|||+|.+++.+. .+.+++++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 999999999999999888653 56788899999999888889889999999999999999874 45678889999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcC-CCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
||++++.||..+++.|++.+|+.+|.++||||.|+.+++++...+. +|+.|++....+....+++.|.++.+.... +.
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f 317 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RF 317 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hH
Confidence 9999999999999999999999999999999999999999998876 599999988777788888999888776443 35
Q ss_pred HHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcc
Q 016712 333 ENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVS 382 (384)
Q Consensus 333 ~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~ 382 (384)
..++..+. ..+.-++.+|....+.|.-+||++++..|..+...|++-+--
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg 382 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG 382 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc
Confidence 55544444 333466778888899999999999999999999999987643
No 24
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=315.57 Aligned_cols=288 Identities=32% Similarity=0.462 Sum_probs=250.0
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc---cCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGR 170 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~ 170 (384)
-+.+..+|++.+++.++++.+.+.||..|+|+|..+||..++.+|+|.++.||||||.+|++|++..+...... ...
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 34567889999999999999999999999999999999999999999999999999999999999988764421 123
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
..||.++++.||++|++|+.++-.+++. +++++.+.||.+..++--.+..||+|+|+||++|.+.+.+..+.++++.+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 4689999999999999999999888875 46677789999998888889999999999999999999999999999999
Q ss_pred EEEeCcccccCCChHHHHHHHHHHCCC---C----------------------CcEEEEEccCChhHHHHHHHhcCCCeE
Q 016712 249 VVLDEADQMLSVGFAEDVEVILERLPQ---N----------------------RQSMMFSATMPPWIRSLTNKYLKNPLT 303 (384)
Q Consensus 249 vViDEah~~~~~~~~~~~~~il~~l~~---~----------------------~q~l~~SAT~~~~~~~~~~~~l~~~~~ 303 (384)
||+||||+|.|+||.+++..++..+|. . +|+++||||+|+.+..+++.|+.+|++
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 999999999999999999999999863 1 699999999999999999999999998
Q ss_pred EEecCCCcccccCCeEEEEEEeccchhhHHHHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhh
Q 016712 304 VDLVGDSDQKLADGISLYSIATSMNMQKVENALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKAR 369 (384)
Q Consensus 304 i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR 369 (384)
+.+. ......+.+.|.++.... +.|...+.. |..+.++-++..|...|+.|..|||+-+++||
T Consensus 480 vtig--~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 480 VTIG--SAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EEec--cCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 8763 333445556666666653 333443322 34478889999999999999999999999999
Q ss_pred hchhhhhhcCCcccC
Q 016712 370 GRGPFQLSEMDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~~~~~V~ 384 (384)
+.+++.|++|..||+
T Consensus 557 e~aL~~fr~~t~dIl 571 (673)
T KOG0333|consen 557 ENALADFREGTGDIL 571 (673)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999988874
No 25
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-41 Score=305.15 Aligned_cols=280 Identities=31% Similarity=0.411 Sum_probs=236.8
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|+.||+++++.+.|..+|+++|||+|..|||.+++|+|+|.+|.||||||.+|.+|+++++.++ ..|..++
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFal 79 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFAL 79 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEE
Confidence 3569999999999999999999999999999999999999999999999999999999999999663 3577899
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc----CCCCCCccEEEE
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVL 251 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~----~~~~~~l~~vVi 251 (384)
|++||++|+.|+.+.|..+++ ++++.+++||...-.+...+...+||+|+|||++.+++..+ ...+++++++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 999999999999999999886 66788899999988888899999999999999999999776 234789999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK 331 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k 331 (384)
||||++++..|...++.+.+.+|..+|.++||||+.+.+.++..--...+....+....+....+.+.+.|+.+.... |
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-k 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-K 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-h
Confidence 999999999999999999999999999999999999988877665555432222222344566667777777765332 2
Q ss_pred HHHHHHHH-----------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSL-----------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~-----------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
-..+++.+ -..++.++..|..+++++..+||.|++++|-..+.+|+.+.+.|+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~il 308 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARIL 308 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEE
Confidence 22222222 255667777788889999999999999999999999999988764
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=315.71 Aligned_cols=284 Identities=26% Similarity=0.393 Sum_probs=231.6
Q ss_pred CCCCCccCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 96 DEGLDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
-.+..|+.+||++.++..|+. |++..||.+|.++||.+++|+|++|.++||||||++|++|+++.++....+-.+..|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 456789999999999999997 7999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCCCCc---eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAPSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vV 250 (384)
.+|||+||||||.|+|+.++++...+. .+.+.||...+.+...+.+|++|+|+|||+|.+++.+ ..+.++++++||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 999999999999999999999876543 3457888888888899999999999999999999977 467899999999
Q ss_pred EeCcccccCCChHHHHHHHHHHCC-------------CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCC-------
Q 016712 251 LDEADQMLSVGFAEDVEVILERLP-------------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDS------- 310 (384)
Q Consensus 251 iDEah~~~~~~~~~~~~~il~~l~-------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~------- 310 (384)
+||+|++++.||..++..|++.+. ...|.+++|||+...+..++..-+.||+.|.++...
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 999999999999999999999872 236889999999999999999999999999832110
Q ss_pred ----------------cccccCCeEEEEEEeccchhhHHHHHHHHhH------------------hHHHHHHHHHh----
Q 016712 311 ----------------DQKLADGISLYSIATSMNMQKVENALFSLKQ------------------NVMQTAWLMLW---- 352 (384)
Q Consensus 311 ----------------~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~------------------~~~~~~~~l~~---- 352 (384)
...+.+.+.+.|..++.. -++..+...+.+ .++-.+..|..
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 012334455566555532 222223222222 22222222221
Q ss_pred ------------------hcceEEEecCCCChhhhhchhhhhhcCC
Q 016712 353 ------------------LKVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 353 ------------------~~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.+.++.-+||+|++++|..+++.|..-+
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~ 497 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR 497 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc
Confidence 1557999999999999999999998644
No 27
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6e-39 Score=337.68 Aligned_cols=312 Identities=14% Similarity=0.154 Sum_probs=244.9
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
.++.+++|.+ ++.+.+|.++ ..++++++++..|++++.++.+.+. |+.+....+..|.. +..+++
T Consensus 366 ~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~---~~~~~~ 442 (926)
T TIGR00580 366 GEDKLYVPVEQLHLISRYVGGSGKNPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPP---DLEWQQ 442 (926)
T ss_pred CCCEEEEEHHHcCceeeecCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CHHHHH
Confidence 5688999999 9999999875 4789999999999999888776654 55556666766644 778888
Q ss_pred HHHHc-CCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 113 ALARR-GISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 113 ~l~~~-g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+.+. +| +||++|.+||+.++++ +|++++||||+|||++|++|++..+.. +++++|++||++|
T Consensus 443 ~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~L 512 (926)
T TIGR00580 443 EFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLL 512 (926)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHH
Confidence 88875 66 6999999999999986 799999999999999999999988743 6899999999999
Q ss_pred HHHHHHHHHHhCCCC--ceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 186 AKQVEKEFHESAPSL--DTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 186 a~q~~~~~~~~~~~~--~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
|.|+++.|++++.++ ++..++|+....+.. ..+.. .++|+||||.. + ...+.++++++|||||+|+
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahr--- 584 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQR--- 584 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccc---
Confidence 999999999987654 455677766544433 33444 48999999842 2 3556789999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH----
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA---- 335 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l---- 335 (384)
|+......++.++.++|+++||||+++++..+...++.++..|...+.... .+..++........ .+.+
T Consensus 585 --fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~----~V~t~v~~~~~~~i-~~~i~~el 657 (926)
T TIGR00580 585 --FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL----PVRTFVMEYDPELV-REAIRREL 657 (926)
T ss_pred --cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc----ceEEEEEecCHHHH-HHHHHHHH
Confidence 566667778888889999999999999998888888889988876544322 23334332211110 1111
Q ss_pred --------HHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 --------LFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 --------~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++..+.++.++..|... ++++..+||+|++++|++++++|++|+++|+
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~IL 716 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVL 716 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 233446777888888775 7899999999999999999999999999985
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=304.49 Aligned_cols=288 Identities=28% Similarity=0.450 Sum_probs=244.8
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc--cCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK--HGRG 171 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~--~~~~ 171 (384)
.+.+..+|.++.++..+++.|++.|+.+|||+|.+.+|.+++|+|+|..+-||||||++|++|++...++.... -.++
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 44566789999999999999999999999999999999999999999999999999999999998877654322 2346
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--------CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCC
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--------PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL 243 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~ 243 (384)
.||..|||||+|+||.|.++.+..++ |.++...+.||.+..++...+..|.+|+|+|||+|.+++....+.+
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 79999999999999999998877653 3556778899999999999999999999999999999999999999
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSI 323 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~ 323 (384)
.-++++++||||+|.+.||..++..|+..+...+|+++||||+|..++.+++.-+-.|++|++-..- ...-++.+...
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG--AAsldViQevE 402 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG--AASLDVIQEVE 402 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc--ccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974321 11111221111
Q ss_pred EeccchhhHHHHHHHHh-------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 324 ATSMNMQKVENALFSLK-------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 324 ~~~~~~~k~~~l~~~~~-------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+ ..+.|...++.++. ..+..+.++|.-.|+.+..+|||-.+++|...++.|+.|+-||+
T Consensus 403 yV-kqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVL 475 (610)
T KOG0341|consen 403 YV-KQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVL 475 (610)
T ss_pred HH-HhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceE
Confidence 12 12334333333333 56678888888889999999999999999999999999999985
No 29
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-39 Score=308.59 Aligned_cols=283 Identities=30% Similarity=0.453 Sum_probs=242.0
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc--CCC--CCC
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRG--RNP 174 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~--~~~--~~~ 174 (384)
..|.+-.+.+.+...+...||..|||+|+.+||.+..|+|+++||+||+|||.+|++|++..+.+..... ... ..|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 3677777899999999999999999999999999999999999999999999999999999998754321 111 358
Q ss_pred EEEEEecCHHHHHHHHHHHHHhC--CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 175 LCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+++|++||+|||.|++++.+++. ..+.....||+.+...+.+.+.++|||+|+|||+|.+++..+.+.+.+++++|+|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 99999999999999999999975 3677888999999999999999999999999999999999999999999999999
Q ss_pred CcccccC-CChHHHHHHHHHHCCC----CCcEEEEEccCChhHHHHHHHhcCC-CeEEEecCCCcccccCCeEEEEEEec
Q 016712 253 EADQMLS-VGFAEDVEVILERLPQ----NRQSMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 253 Eah~~~~-~~~~~~~~~il~~l~~----~~q~l~~SAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
|||+|+| .+|.+++..|+..... +.|.++||||+|..+..++..|+.+ ++.+.+. .-.....++.+....+.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVN 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeec
Confidence 9999999 9999999999998743 7899999999999999999999987 5555542 22355667777777775
Q ss_pred cchhhHHHHHHHH-----------------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 327 MNMQKVENALFSL-----------------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 327 ~~~~k~~~l~~~~-----------------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
.. +|...++..+ .+.+..+...+...++.+..+||.-++.||++.++.|++|.+.|
T Consensus 312 ~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pv 390 (482)
T KOG0335|consen 312 EM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPV 390 (482)
T ss_pred ch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcce
Confidence 33 3333333322 25566888888999999999999999999999999999999876
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 391 l 391 (482)
T KOG0335|consen 391 L 391 (482)
T ss_pred E
Confidence 3
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-39 Score=327.08 Aligned_cols=290 Identities=32% Similarity=0.483 Sum_probs=254.9
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCC
Q 016712 92 DSSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (384)
Q Consensus 92 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 171 (384)
...+.+...|.+.|++..++..++++||.+|+|+|.+|||+++.|+|+|.+|.||||||++|++|++.++.... ....+
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr-~~~~g 436 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLEEG 436 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC-ChhhC
Confidence 34556778999999999999999999999999999999999999999999999999999999999997775533 33446
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC---CCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~---~~~~l 246 (384)
.||.+||++||++|+.|+.+.++.+.. ++.+++++|+....++...+++|+.|+|||||+.++++-.+.- ++.++
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~ 516 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRV 516 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccccccc
Confidence 699999999999999999999988764 6788999999999999999999999999999999999966544 45556
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
.++|+||+|+|++.+|.+++..|+..+++.+|++++|||+|..+..++...+..|+.|.+. -...+...+.+.+..+.
T Consensus 517 t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~ 594 (997)
T KOG0334|consen 517 TYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCA 594 (997)
T ss_pred ceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEec
Confidence 6999999999999999999999999999999999999999999999999999999987664 34466777888888887
Q ss_pred cchhhHHHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 327 MNMQKVENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 327 ~~~~k~~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..++|...++..+. +.+..+...|...|+.|..+||+-++.+|..++++|+++.+.++
T Consensus 595 ~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LL 667 (997)
T KOG0334|consen 595 IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLL 667 (997)
T ss_pred CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEE
Confidence 67888877766555 55556677778889999999999999999999999999988764
No 31
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.7e-38 Score=340.84 Aligned_cols=314 Identities=13% Similarity=0.126 Sum_probs=246.4
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
.++.+++|.+ +..+.+|.++ ..++++++++..|++.+.++.+.+. |+.+...++..|.. +..+++
T Consensus 515 ~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~---~~~~~~ 591 (1147)
T PRK10689 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH---DREQYQ 591 (1147)
T ss_pred CCCeEEeeHHHhCcEeeecCCCCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---CHHHHH
Confidence 4688999999 9999999875 4788999999999999888777665 56667777777755 677777
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+.+.....||++|.+||+.++.+ +|++++|+||+|||++|+++++..+. .+++++||+||++||
T Consensus 592 ~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHH
Confidence 776653337999999999999987 89999999999999999999887763 478999999999999
Q ss_pred HHHHHHHHHhCCC--CceEEEECCCChHHHHHHHh----cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 187 KQVEKEFHESAPS--LDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 187 ~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.|+++.|++.+.. +++.+++|+.+..++...+. .+++|+||||+.+ +..+.++++++|||||+|++
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf--- 734 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF--- 734 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc---
Confidence 9999999987754 45666778777666554443 3589999999643 24566889999999999995
Q ss_pred ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH-----
Q 016712 261 GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA----- 335 (384)
Q Consensus 261 ~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l----- 335 (384)
+......++.++.++|+++||||+++++..+...+++++..|...+.... .+..+.........+...+
T Consensus 735 --G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~----~v~~~~~~~~~~~~k~~il~el~r 808 (1147)
T PRK10689 735 --GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL----AVKTFVREYDSLVVREAILREILR 808 (1147)
T ss_pred --chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCC----CceEEEEecCcHHHHHHHHHHHhc
Confidence 33446667888889999999999999999999999999999987544321 2333333222111111111
Q ss_pred ------HHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 ------LFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ------~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++..+.+++++..+... ++++.++||+|++++|++++.+|++|++||+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VL 865 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEE
Confidence 234446677888888776 7899999999999999999999999999985
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-38 Score=290.22 Aligned_cols=277 Identities=27% Similarity=0.446 Sum_probs=243.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.+|++++|++.+++.+...||++|+.+|+.||.++.+|.|+++.+++|+|||.+|.+++++.+.. .....++++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qali 99 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQALI 99 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999998733 234678999
Q ss_pred EecCHHHHHHHHHHHHHhCCCC--ceEEEECCCChHHHHH-HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMR-ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~--~~~~~~g~~~~~~~~~-~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
++||++|+.|+.+....++... .+..+.||.....+.. ....+++|+||||+++.+++..+.+..+.++++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999999999999888644 5555677777664444 444568999999999999999888888899999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
.|+..||..++..+.+.++++.|++++|||.|+++....+.|+++|+.|.+. .++..+.+++++++.+...+ |.+.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~-k~~~l 256 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEE-KLDTL 256 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccc-cccHH
Confidence 9999999999999999999999999999999999999999999999999874 44577999999999887655 66654
Q ss_pred ------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 ------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.+..+...|...+..+.++||.|.+.+|+.++..|+.|...|+
T Consensus 257 ~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvl 317 (397)
T KOG0327|consen 257 CDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVL 317 (397)
T ss_pred HHHHHhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEE
Confidence 3344566777888888889999999999999999999999999998764
No 33
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-37 Score=291.66 Aligned_cols=286 Identities=32% Similarity=0.471 Sum_probs=230.2
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhc----
Q 016712 93 SSKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEK---- 167 (384)
Q Consensus 93 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---- 167 (384)
.......+|..|+++.+++++|..+||..||++|..++|++..| .|++..|.||||||++|.+|+++.+......
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34445567999999999999999999999999999999999999 7999999999999999999999966432110
Q ss_pred -cCCCCCCE--EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-
Q 016712 168 -HGRGRNPL--CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL- 241 (384)
Q Consensus 168 -~~~~~~~~--~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~- 241 (384)
.....+++ +||++||||||.|+.+.+....+ ++.+..++||.....+.+.+...++|||+|||+|+.++..+..
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 01122444 99999999999999999998764 7788889999999999999999999999999999999987654
Q ss_pred --CCCCccEEEEeCcccccCCChHHHHHHHHHHCC-----CCCcEEEEEccCChh---------------------HHHH
Q 016712 242 --NLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-----QNRQSMMFSATMPPW---------------------IRSL 293 (384)
Q Consensus 242 --~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-----~~~q~l~~SAT~~~~---------------------~~~~ 293 (384)
++++++++|+||+|+|++.|...++..+++.+. ..+|+++||||++-. ++.+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 578899999999999999998889999988875 368999999998421 2233
Q ss_pred HHH--hcCCCeEEEecCCCc------------ccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEE
Q 016712 294 TNK--YLKNPLTVDLVGDSD------------QKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVS 359 (384)
Q Consensus 294 ~~~--~l~~~~~i~~~~~~~------------~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~ 359 (384)
+.. +...|.+|.+.+... .+.......||.... ...+ -.+++|.++.+.+++-+|..+++....
T Consensus 415 mk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r-yPGr-TlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR-YPGR-TLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee-cCCc-eEEEechHHHHHHHHHHHhhcCCCCch
Confidence 332 223578888754431 122233444554443 2222 246788999999999999999999999
Q ss_pred ecCCCChhhhhchhhhhhcCC
Q 016712 360 LCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 360 ~hg~m~~~eR~~il~~F~~~~ 380 (384)
+|+.|.+++|-+.+++|++..
T Consensus 493 LHA~M~QKqRLknLEkF~~~~ 513 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSP 513 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCC
Confidence 999999999999999999854
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.8e-35 Score=306.77 Aligned_cols=266 Identities=21% Similarity=0.249 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.+++.+.++|.++||.+||++|.++|+.+++|+|+++++|||||||++|++|+++.+.. ..+.++|||+||++
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHH
Confidence 37999999999999999999999999999999999999999999999999999999865 24678999999999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc----cCCCCCCccEEEEeCcccccC
Q 016712 185 LAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR----NALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 185 La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~----~~~~~~~l~~vViDEah~~~~ 259 (384)
|++|+++.++++.. ++.+..+.|+.. ..+...+..+++|+|+||+++...+.. +...++++++|||||+|.|.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 99999999999862 456666666655 445556667799999999999754432 122378999999999999977
Q ss_pred CChHHHHHHHHHHC-------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEecc-----
Q 016712 260 VGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM----- 327 (384)
Q Consensus 260 ~~~~~~~~~il~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----- 327 (384)
. |+..+..+++++ +.+.|++++|||+++... ++..++..+..+ +..+ .. ......+......
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~--~~-~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTED--GS-PRGARTVALWEPPLTELT 245 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCC--CC-CcCceEEEEecCCccccc
Confidence 4 887777666654 457899999999998855 567777777654 2211 11 1111222211111
Q ss_pred -----------chhhHHHH------------HHHHhHhHHHHHHHHHhh--------cceEEEecCCCChhhhhchhhhh
Q 016712 328 -----------NMQKVENA------------LFSLKQNVMQTAWLMLWL--------KVIIVSLCMGISHKARGRGPFQL 376 (384)
Q Consensus 328 -----------~~~k~~~l------------~~~~~~~~~~~~~~l~~~--------~~~v~~~hg~m~~~eR~~il~~F 376 (384)
..++...+ +++.++.++.++..+... +.++..|||+|++++|++++++|
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 11222222 223446677777766543 57899999999999999999999
Q ss_pred hcCCcccC
Q 016712 377 SEMDVSIY 384 (384)
Q Consensus 377 ~~~~~~V~ 384 (384)
++|+++|+
T Consensus 326 ~~G~i~vL 333 (742)
T TIGR03817 326 RDGELLGV 333 (742)
T ss_pred HcCCceEE
Confidence 99999874
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=281.93 Aligned_cols=277 Identities=30% Similarity=0.454 Sum_probs=246.9
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
-.|..+||+..+.+++.+.||..|||+|+.+||.+++++|++..+-||||||.+|++|+++++.... +.|.++++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Rali 95 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALI 95 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceee
Confidence 5699999999999999999999999999999999999999999999999999999999999986532 46789999
Q ss_pred EecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 179 LAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
++||++|+.|..+.+++++. +++..+.+|+....++...+..++|||++||+++.++.-.-.+.++.+.|||+||+|+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999886 5667788999999999999999999999999999988877668899999999999999
Q ss_pred ccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH
Q 016712 257 MLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL 336 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (384)
++++||.+++.+++.+++.+.|+++||||+|+.+-.+++..+.+|+.+++ +.+..+.+.++.....+. .++|...++
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRl--dvetkise~lk~~f~~~~-~a~K~aaLl 252 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRL--DVETKISELLKVRFFRVR-KAEKEAALL 252 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEe--ehhhhcchhhhhheeeec-cHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 455577777776666665 456666666
Q ss_pred HHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 337 FSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 337 ~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.+. .+++-+...+...|+.+..+.|.|.++.|...+.+|+.+...+
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~ 314 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSI 314 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccce
Confidence 5544 4566777788888999999999999999999999999887543
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=276.94 Aligned_cols=278 Identities=25% Similarity=0.330 Sum_probs=238.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
-...+|++|.|.|++++.+..|+|.+|+.+|..++|.++.. +|+|.++..|+|||.+|.+.++.++.. ....
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~ 160 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVV 160 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccC
Confidence 34568999999999999999999999999999999999876 799999999999999999999998843 2457
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE--CCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVY--GGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vV 250 (384)
|+++.|+||++||.|+.+.+.+.++..++...+ .+.. ..+.-.-..+|+||||+.+.+++.. ..+.+..++.+|
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK---AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---cccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 889999999999999999999998755433322 2220 0001011258999999999999987 788899999999
Q ss_pred EeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccch
Q 016712 251 LDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM 329 (384)
Q Consensus 251 iDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 329 (384)
+||||.|++. ||+.+-..|+..+|+++|+++||||+...+..++..++.++..+.+. .++..+.++.++++.|...+
T Consensus 238 lDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRD 315 (477)
T ss_pred ecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchh
Confidence 9999999865 69999999999999999999999999999999999999999988874 45578899999999999999
Q ss_pred hhHHHHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 330 QKVENALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 330 ~k~~~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.|...+... .+..++.++..+...|..|.++||+|+.++|.+++++|++|+..|+
T Consensus 316 ~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVL 384 (477)
T KOG0332|consen 316 DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVL 384 (477)
T ss_pred hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEE
Confidence 999877442 2377778888999999999999999999999999999999998774
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.6e-36 Score=291.90 Aligned_cols=280 Identities=28% Similarity=0.416 Sum_probs=245.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.....|+++-+..+++..|...+|..||++|..|||.+..++|+||++..|+|||++|...+++.+.. +...++
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q 95 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQ 95 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcce
Confidence 34567999999999999999999999999999999999999999999999999999999888887643 345789
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
.+|++|||+++.|+.+++..+++ ++++.++.||+........+++ ++|+|||||++.+++..+.++...++++|+|
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 99999999999999999999876 7788999999988877776665 7999999999999999999999999999999
Q ss_pred CcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh-
Q 016712 253 EADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ- 330 (384)
Q Consensus 253 Eah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~- 330 (384)
|||.+.+. .|..++..|+..+|..+|++.+|||.|..+.+.+.+|+++|-.|++. .+...+-++++|+.......-
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n--~~d~~L~GikQyv~~~~s~nns 252 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFN--ADDVQLFGIKQYVVAKCSPNNS 252 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecc--cCCceeechhheeeeccCCcch
Confidence 99999984 59999999999999999999999999999999999999999999884 455788899999987664421
Q ss_pred ------hHHH--------------HHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 ------KVEN--------------ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 ------k~~~--------------l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|... +++.....++.++..|...|++|.++.|.|++.+|.-+++.+++-..+|+
T Consensus 253 veemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rIL 326 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRIL 326 (980)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEE
Confidence 2221 23344566777888888889999999999999999999999998766653
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.2e-34 Score=297.57 Aligned_cols=179 Identities=25% Similarity=0.360 Sum_probs=155.4
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.|+++++++.+++.+.+.||.+|+|+|.+|++. +..|+|+++++|||||||++|.+|++..+. .++++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal 71 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKAL 71 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEE
Confidence 3688999999999999999999999999999998 788999999999999999999999999883 367899
Q ss_pred EEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
||+|+++||.|+++.|+++.+ ++++..++|+...... ....++|+|+||+++..++..+..+++++++|||||+|.
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 999999999999999998643 5777788887654332 223579999999999988887666789999999999999
Q ss_pred ccCCChHHHHHHHHHHC---CCCCcEEEEEccCChh
Q 016712 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPW 289 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l---~~~~q~l~~SAT~~~~ 289 (384)
+.+.+++..++.++.++ .++.|++++|||+++.
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~ 184 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA 184 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH
Confidence 99888999988887665 4689999999999863
No 39
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=5.1e-33 Score=248.13 Aligned_cols=200 Identities=44% Similarity=0.774 Sum_probs=181.4
Q ss_pred ccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe
Q 016712 101 ISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (384)
Q Consensus 101 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~ 180 (384)
|+++++++.+++.|.+.|+..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.... ...+++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILA 76 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEc
Confidence 67899999999999999999999999999999999999999999999999999999999886531 12478899999
Q ss_pred cCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 181 PTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 181 Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
|+++|+.|+.+.++.+.. ++.+..++|+.........+..+++|+|+||+.+.+.+..+...+++++++|+||+|.+.
T Consensus 77 p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 999999999999988764 566777888888777766776689999999999999998888889999999999999999
Q ss_pred CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEE
Q 016712 259 SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (384)
Q Consensus 259 ~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 304 (384)
+.+++..+..+++.++.++|++++|||+++.+..+...++.+|+.|
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8889999999999999999999999999999999999999999876
No 40
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2e-32 Score=285.65 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=196.2
Q ss_pred CCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 103 ~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
.++....+...+.+ +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISP 508 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 508 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeC
Confidence 56777788888887 59999999999999999999999999999999999999999853 457999999
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh------cCCCEEEECchhHHH--HHHcc---CCCCCCccEEE
Q 016712 182 TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD------YGVDAVVGTPGRVID--LIKRN---ALNLSEVQFVV 250 (384)
Q Consensus 182 t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~IlV~Tp~~l~~--~l~~~---~~~~~~l~~vV 250 (384)
+++|++++...+... +++...+.++....++...+. ..++|+|+||++|.. .+... ......+.+||
T Consensus 509 LiSLmqDQV~~L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 999999777777664 477888888887766654443 358999999999853 22211 11234589999
Q ss_pred EeCcccccCCC--hHHHHHHH--HHHCCCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEE
Q 016712 251 LDEADQMLSVG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIA 324 (384)
Q Consensus 251 iDEah~~~~~~--~~~~~~~i--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~ 324 (384)
|||||++++|| |.+.+..+ +....+++|++++|||+++.+...+...+. ++..+.. . ....++ ++..
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~--S---f~RpNL--~y~V 659 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ--S---FNRPNL--WYSV 659 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec--c---cCccce--EEEE
Confidence 99999999998 88877654 444456789999999999998876666554 3333321 1 111222 2222
Q ss_pred eccchhhHH---------------HHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 325 TSMNMQKVE---------------NALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 325 ~~~~~~k~~---------------~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
........+ .+++..++.++.++..|...|+.+..|||+|++++|++++++|.+|+++|+
T Consensus 660 v~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VL 734 (1195)
T PLN03137 660 VPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINII 734 (1195)
T ss_pred eccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 221111111 123334477889999999999999999999999999999999999999874
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-32 Score=288.84 Aligned_cols=184 Identities=23% Similarity=0.365 Sum_probs=160.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.|+++++++.+.+.|.+.||.+|+|+|.++++. +..|+|+++++|||||||++|.+|++..+.. .+.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEE
Confidence 578899999999999999999999999999986 7899999999999999999999999988753 3578999
Q ss_pred EecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
|+|+++|+.|+++.++.+.. ++++..++|+...... ....++|+|+||+++..++.....+++++++|||||+|.+
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 99999999999999987532 5677778887654322 2345899999999998888777677899999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.+.+++..++.++.++..+.|++++|||+++. ..+..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~ 187 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE 187 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH
Confidence 98889999999999999999999999999863 44544
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.1e-32 Score=287.49 Aligned_cols=276 Identities=16% Similarity=0.220 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+.+.+.+ +|..|||+|.++|+.+++|+|+++++|||||||++|++|++..+...........+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 57777777666 78899999999999999999999999999999999999999998754322222346789999999999
Q ss_pred HHHHHHHHHH-------h----C---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC--CCCCccEE
Q 016712 186 AKQVEKEFHE-------S----A---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFV 249 (384)
Q Consensus 186 a~q~~~~~~~-------~----~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~--~~~~l~~v 249 (384)
++|+++.+.+ . + +++.+.+.+|+....+..+.+.++++|+|+||++|..++..... .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876552 1 1 24567788899888777777788899999999999877765433 47899999
Q ss_pred EEeCcccccCCChHHHHHHHHHHC----CCCCcEEEEEccCChhHHHHHHHhcC--------CCeEEEecCCCcc---cc
Q 016712 250 VLDEADQMLSVGFAEDVEVILERL----PQNRQSMMFSATMPPWIRSLTNKYLK--------NPLTVDLVGDSDQ---KL 314 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~~l----~~~~q~l~~SAT~~~~~~~~~~~~l~--------~~~~i~~~~~~~~---~~ 314 (384)
||||+|.+.+..++..+...+.++ +.+.|++++|||+++. ..+.. ++. .++.+.-...... ..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~iv~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEIVDARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEEEccCCCccceEEE
Confidence 999999999877776665555443 3678999999999763 22322 221 1222211000000 00
Q ss_pred cCCeEEEEEEecc--chhhHH------------HHHHHHhHhHHHHHHHHHhh------cceEEEecCCCChhhhhchhh
Q 016712 315 ADGISLYSIATSM--NMQKVE------------NALFSLKQNVMQTAWLMLWL------KVIIVSLCMGISHKARGRGPF 374 (384)
Q Consensus 315 ~~~i~~~~~~~~~--~~~k~~------------~l~~~~~~~~~~~~~~l~~~------~~~v~~~hg~m~~~eR~~il~ 374 (384)
............. ...... .++++.++.++.++..|... +..+.++||+|+.++|.++++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 0000000000000 000011 11234446677777777652 468999999999999999999
Q ss_pred hhhcCCcccC
Q 016712 375 QLSEMDVSIY 384 (384)
Q Consensus 375 ~F~~~~~~V~ 384 (384)
+|++|+++|+
T Consensus 335 ~fk~G~i~vL 344 (876)
T PRK13767 335 KLKRGELKVV 344 (876)
T ss_pred HHHcCCCeEE
Confidence 9999998874
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-31 Score=268.75 Aligned_cols=247 Identities=20% Similarity=0.274 Sum_probs=182.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.+...
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999998742 456999999999999999999876
Q ss_pred CCCCceEEEECCCChHHHHH---HHhc-CCCEEEECchhHHHHH-HccCC-CCCCccEEEEeCcccccCCC--hHHHHHH
Q 016712 197 APSLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLI-KRNAL-NLSEVQFVVLDEADQMLSVG--FAEDVEV 268 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l-~~~~~-~~~~l~~vViDEah~~~~~~--~~~~~~~ 268 (384)
+ +.+..+.++....+... .+.. ..+|+++||+++.... ....+ ...++++|||||||++++|| |...+..
T Consensus 75 g--i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 75 G--IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred C--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 4 66666777665443322 2223 4899999999975422 11112 46789999999999999987 6666655
Q ss_pred H--HHHCCCCCcEEEEEccCChhHHHHHHHhc--CCCeEEEecCCCcccccCCeEEEEEEeccchhhHHH----------
Q 016712 269 I--LERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN---------- 334 (384)
Q Consensus 269 i--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~---------- 334 (384)
+ +....++.+++++|||+++.+.......+ .++..+...-+ ..++. +.+... .....+.
T Consensus 153 l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-----r~nl~-~~v~~~-~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 153 LGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-----RPNLY-YEVRRK-TPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-----CCCcE-EEEEeC-CccHHHHHHHHHHHhcC
Confidence 4 23333678999999999998877666554 35554432111 11221 111111 1111111
Q ss_pred -----HHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 335 -----ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 335 -----l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++++.++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vL 280 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVV 280 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 12334578889999999999999999999999999999999999999874
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.9e-32 Score=280.50 Aligned_cols=182 Identities=19% Similarity=0.259 Sum_probs=153.8
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|+++++++.+.+.+.+.||. ++++|.++++.+..|+|+++++|||||||+++.++++..+.. +.+++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i 71 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYI 71 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEE
Confidence 578899999999999999986 999999999999999999999999999999999999988743 5689999
Q ss_pred ecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 180 APTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
+|+++||.|+++.++++.. +..+...+|+...... ....++|+|+||+++..++.++...++++++|||||+|++.
T Consensus 72 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 72 VPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred echHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999999999987542 5666777777554322 22457999999999998888777778999999999999999
Q ss_pred CCChHHHHHHHHHH---CCCCCcEEEEEccCChhHHHHHH
Q 016712 259 SVGFAEDVEVILER---LPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 259 ~~~~~~~~~~il~~---l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+.+++..++.++.. ++++.|+|++|||+++. .++..
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~ 187 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ 187 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH
Confidence 88888888877654 45689999999999763 44444
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=2.7e-30 Score=268.19 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=180.6
Q ss_pred CHHHHHHHHH-cCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 107 SQDIVAALAR-RGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 107 ~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+..+++.+.+ .+| +||++|.++++.+..+ ++++++||||||||++|++|++..+. .|.+++|+
T Consensus 247 ~~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lil 316 (681)
T PRK10917 247 DGELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALM 316 (681)
T ss_pred ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEE
Confidence 4566666665 466 6999999999999887 48999999999999999999998873 47899999
Q ss_pred ecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 180 APTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++||.|+++.++++++. +++.+++|+.+..+.. ..+.. .++|+||||+.+. ..+.++++++|||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEec
Confidence 99999999999999998764 6778889988754433 34444 4999999998763 345688999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|+ |+......+.....+.++++||||+.++...+......+...+...+.. ...+..++......+.-.+
T Consensus 392 ~Hr-----fg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~----r~~i~~~~~~~~~~~~~~~ 462 (681)
T PRK10917 392 QHR-----FGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG----RKPITTVVIPDSRRDEVYE 462 (681)
T ss_pred hhh-----hhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC----CCCcEEEEeCcccHHHHHH
Confidence 998 4444455555556678999999999888766654333343444322111 1112222222211111111
Q ss_pred HHHHH--------------------HhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------------LKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------------~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ....+...++.+... +.++..+||+|++++|++++++|++|+++|+
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 535 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDIL 535 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 11110 012234455555544 5789999999999999999999999999885
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.98 E-value=3e-30 Score=264.95 Aligned_cols=258 Identities=19% Similarity=0.246 Sum_probs=188.1
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 105 DISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 105 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
++++.....|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 344555566665 59999999999999999999999999999999999999999843 34699999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+|+.|+.+.++..+ +...++.++......... +.. ..+++++||+++........+...++++|||||||++.+
T Consensus 76 sL~~dqv~~l~~~g--i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 76 SLMKDQVDQLLANG--VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHHHcC--CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99999999998864 666667676655443322 222 479999999998743322334456799999999999999
Q ss_pred CC--hHHHHHHH--HHHCCCCCcEEEEEccCChhHHHHHHHhc--CCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 260 VG--FAEDVEVI--LERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 260 ~~--~~~~~~~i--l~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
|| |.+.+..+ +....++.+++++|||+++.+.......+ .+|.... .+- + ..++. +.+ ... ..+.+
T Consensus 154 ~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~-~---r~nl~-~~v-~~~-~~~~~ 225 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF-D---RPNIR-YTL-VEK-FKPLD 225 (607)
T ss_pred ccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCC-C---CCcce-eee-eec-cchHH
Confidence 87 66655444 22233578999999999998776544443 3554332 111 1 11222 111 111 11112
Q ss_pred HH--------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NA--------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l--------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+ +++.++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 226 ~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VL 290 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIV 290 (607)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEE
Confidence 12 2344588889999999999999999999999999999999999999874
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=267.35 Aligned_cols=270 Identities=19% Similarity=0.254 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+++++.+. |..|||.|.+|||.+.+|+|+|++||||||||+++.+|++..+.... ......+..+|||+|.++|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHH
Confidence 588999999987 88999999999999999999999999999999999999999998753 2222357889999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC--CCCCCccEEEEeCcccccCCC
Q 016712 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVG 261 (384)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~l~~vViDEah~~~~~~ 261 (384)
.+++.+.+...+. ++++.+-+|+++..+..+...+.+||+|+|||.|.-++.... -.|.++++|||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999988764 677888899999888888889999999999999987775533 258899999999999998777
Q ss_pred hHHHHHHHHHHCC---CCCcEEEEEccCChhHHHHHHHhcCC--CeEEEecCCCcccccCCeEEEEEEeccc--------
Q 016712 262 FAEDVEVILERLP---QNRQSMMFSATMPPWIRSLTNKYLKN--PLTVDLVGDSDQKLADGISLYSIATSMN-------- 328 (384)
Q Consensus 262 ~~~~~~~il~~l~---~~~q~l~~SAT~~~~~~~~~~~~l~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~~-------- 328 (384)
.+.++..-+.++. .+.|.|++|||..+. ...++..... +..|.-.+.. .......+.....
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~-----k~~~i~v~~p~~~~~~~~~~~ 239 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA-----KKLEIKVISPVEDLIYDEELW 239 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC-----CcceEEEEecCCccccccchh
Confidence 7777666555542 379999999998754 3333322222 4444322111 1111111111111
Q ss_pred hhhHH------------HHHHHHhHhHHHHHHHHHhhc-ceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 329 MQKVE------------NALFSLKQNVMQTAWLMLWLK-VIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 329 ~~k~~------------~l~~~~~~~~~~~~~~l~~~~-~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
..... +++.|.+..+++++..|...+ ..+...||.++.++|..+.++|++|++++
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lra 307 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKA 307 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceE
Confidence 11111 113355678888988888876 89999999999999999999999999875
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=2e-30 Score=266.50 Aligned_cols=250 Identities=19% Similarity=0.223 Sum_probs=188.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 112 AALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 112 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
+.|++ +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 34655 69999999999999999999999999999999999999998742 446899999999999999
Q ss_pred HHHHHhCCCCceEEEECCCChHHHHHHH----hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC--hHH
Q 016712 191 KEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAE 264 (384)
Q Consensus 191 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~--~~~ 264 (384)
+.++.++ +.+..+.++....+....+ ....+|+++||+++........+...++++|||||||++.+|| |.+
T Consensus 71 ~~l~~~g--i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 71 DQLRAAG--VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 9999874 6777788877665543322 2358999999999975444444556789999999999999887 776
Q ss_pred HHHHHH---HHCCCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH----
Q 016712 265 DVEVIL---ERLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA---- 335 (384)
Q Consensus 265 ~~~~il---~~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l---- 335 (384)
.+..+. ..++ +.+++++|||+++.+...+...+. ++..+.. . ....++....... ..+...+
T Consensus 149 ~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~--~---~~r~nl~~~v~~~---~~~~~~l~~~l 219 (591)
T TIGR01389 149 EYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT--S---FDRPNLRFSVVKK---NNKQKFLLDYL 219 (591)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec--C---CCCCCcEEEEEeC---CCHHHHHHHHH
Confidence 665553 3343 566999999999998877776664 3433321 1 1112222221111 1222222
Q ss_pred ----------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 ----------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ----------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.++.++..|...|+.+..|||+|+.++|++++++|.+|+++|+
T Consensus 220 ~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vl 278 (591)
T TIGR01389 220 KKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVM 278 (591)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 2234477889999999999999999999999999999999999999874
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-32 Score=238.37 Aligned_cols=223 Identities=31% Similarity=0.503 Sum_probs=199.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|.++-|.|++++++.+.||++|+..|.+|||...-|+|+++++.+|-|||.+|++..++.+.. ......+|+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vsvlv 115 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVSVLV 115 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEEEEE
Confidence 34788889999999999999999999999999999999999999999999999999999988743 123456999
Q ss_pred EecCHHHHHHHHHH---HHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 179 LAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 179 l~Pt~~La~q~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
+|+||+||.|+.++ |.++.|++++.+++||...+...+.+++-++|+|||||+++.+.+++.+++++++.+|+||||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd 195 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD 195 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH
Confidence 99999999999655 566788999999999999998888888889999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc
Q 016712 256 QMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328 (384)
Q Consensus 256 ~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 328 (384)
.|+++ ..+.++++|.+..|...|+.+||||++++++..+++|+.+|..|-+. ++....+.++++||+.....
T Consensus 196 kmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~ 268 (387)
T KOG0329|consen 196 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKEN 268 (387)
T ss_pred HHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhh
Confidence 99864 47889999999999999999999999999999999999999999654 45557788889998877633
No 50
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.8e-31 Score=253.54 Aligned_cols=286 Identities=21% Similarity=0.266 Sum_probs=227.0
Q ss_pred CCCCCccC----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCC
Q 016712 96 DEGLDISK----LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG 171 (384)
Q Consensus 96 ~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 171 (384)
.+...|++ ...++.+++.+...||..|+|+|.+|+|.++.++|++.|+|||+|||++|.+|++.++....... ..
T Consensus 129 ~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~-~~ 207 (593)
T KOG0344|consen 129 PPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEK-HK 207 (593)
T ss_pred CccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhccc-Cc
Confidence 34456665 56788999999999999999999999999999999999999999999999999999997754322 24
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--CCC--ceEEEECCCChHH-HHHHHhcCCCEEEECchhHHHHHHccC--CCCC
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSL--DTICVYGGTPISH-QMRALDYGVDAVVGTPGRVIDLIKRNA--LNLS 244 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--~~~--~~~~~~g~~~~~~-~~~~~~~~~~IlV~Tp~~l~~~l~~~~--~~~~ 244 (384)
.|-+++|+.||++|+.|++.++.++. ++. .+..+.......+ ........++|+|+||.++...+..+. +.+.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57899999999999999999999987 322 2222222211111 111112247999999999999998765 6789
Q ss_pred CccEEEEeCcccccCC-ChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEE
Q 016712 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~ 322 (384)
.+.++|+||+|++++. .|..++..|+..+. ++..+-+||||++.+++++++..+.++..|.+. ........+.|..
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg--~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG--LRNSANETVDQEL 365 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe--cchhHhhhhhhhh
Confidence 9999999999999998 89999999998875 577888999999999999999999999887652 2234456677777
Q ss_pred EEeccchhhHHHHHHHHh--------------HhHHHHHHHH-HhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 323 IATSMNMQKVENALFSLK--------------QNVMQTAWLM-LWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 323 ~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l-~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+.....|...+...+. +.+..+...| ...++++.++||..++.+|++.+++|+.|+|.|+
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvL 442 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVL 442 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEE
Confidence 777767777655533322 5555666666 6668999999999999999999999999999875
No 51
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=247.15 Aligned_cols=280 Identities=26% Similarity=0.325 Sum_probs=207.6
Q ss_pred CCccCCCCCHHHHHH----------HHHcCCCCCcHHHHHHHHHHhC---------CCcEEEEccCCCchhHHHHHHHHH
Q 016712 99 LDISKLDISQDIVAA----------LARRGISKLFPIQKAVLEPAMQ---------GRDMIGRARTGTGKTLAFGIPILD 159 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~----------l~~~g~~~~~~~Q~~~i~~i~~---------g~d~li~a~TGsGKT~~~~lp~l~ 159 (384)
-.|+.+++++..... +.++++....|+|..++|.++. ++|+.+.||||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 346777777665554 8899999999999999998853 479999999999999999999999
Q ss_pred HHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcC-----CCEEEECchhH
Q 016712 160 KIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYG-----VDAVVGTPGRV 232 (384)
Q Consensus 160 ~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~-----~~IlV~Tp~~l 232 (384)
.+.... -+.-+++||+||++|+.|++++|.++.++ +.|..+.|..+...+...+.+. .||+|+|||+|
T Consensus 207 ~L~~R~-----v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 207 LLSSRP-----VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred HHccCC-----ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 985421 23468999999999999999999999874 4455567777777777777653 49999999999
Q ss_pred HHHHH-ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC----------------------------------CCCC
Q 016712 233 IDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----------------------------------PQNR 277 (384)
Q Consensus 233 ~~~l~-~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l----------------------------------~~~~ 277 (384)
.+++. ...+.+++++++||||||+|++..|..-+..++..+ .+..
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred HHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 99998 468899999999999999999876654443333322 1234
Q ss_pred cEEEEEccCChhHHHHHHHhcCCCeEEEecC--CCcccccCCeEEEEEEeccchhhHHHHHHH--------------HhH
Q 016712 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSDQKLADGISLYSIATSMNMQKVENALFS--------------LKQ 341 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~--------------~~~ 341 (384)
+.+.+|||+...-..+...-+..|....+.. .........+.++.+.++.. .|...+... ..+
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~-~kpl~~~~lI~~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK-FKPLAVYALITSNKLNRTLCFVNSVS 440 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc-cchHhHHHHHHHhhcceEEEEecchH
Confidence 5888899988777777776777775443321 12234445556666655432 222222221 225
Q ss_pred hHHHHHHHHH----hhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 342 NVMQTAWLML----WLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 342 ~~~~~~~~l~----~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+.+++..|. .....+..|.|+++.+.|.+.+.+|..|++.|+
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vL 487 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVL 487 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEE
Confidence 5556666554 346778889999999999999999999999875
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=2.8e-30 Score=265.71 Aligned_cols=246 Identities=19% Similarity=0.128 Sum_probs=185.8
Q ss_pred HHHH-cCCCCCcHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE-EecCHHHHHHH
Q 016712 113 ALAR-RGISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQV 189 (384)
Q Consensus 113 ~l~~-~g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv-l~Pt~~La~q~ 189 (384)
.+.+ .||. |||||.++++.++.|+ ++++++|||||||.++.++.+.. .. ....++.|| ++|||+|+.|+
T Consensus 7 ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 7 WYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHHHH
Confidence 3444 4997 9999999999999998 57778999999999765444422 11 123455555 67999999999
Q ss_pred HHHHHHhCC-------------------------CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC---
Q 016712 190 EKEFHESAP-------------------------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--- 241 (384)
Q Consensus 190 ~~~~~~~~~-------------------------~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~--- 241 (384)
++.+.+++. .+.+.+++||.....+...+..+++|||||+ +++.++.+
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~g 154 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSG 154 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccc
Confidence 999888664 2556778999999999999999999999995 44444443
Q ss_pred -------------CCCCccEEEEeCcccccCCChHHHHHHHHHHC--CC---CCcEEEEEccCChhHHHHHHHhcCCCeE
Q 016712 242 -------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL--PQ---NRQSMMFSATMPPWIRSLTNKYLKNPLT 303 (384)
Q Consensus 242 -------------~~~~l~~vViDEah~~~~~~~~~~~~~il~~l--~~---~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 303 (384)
.++++.++|+|||| ++.+|...+..|++.+ ++ ++|+++||||++..+..+...++.++..
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~ 232 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK 232 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce
Confidence 26889999999999 6788999999999975 33 2799999999999988888888888877
Q ss_pred EEecCCCcccccCCeEEEEEEeccchhhHHH-----------------HHHHHhHhHHHHHHHHHhhcceEEEecCCCCh
Q 016712 304 VDLVGDSDQKLADGISLYSIATSMNMQKVEN-----------------ALFSLKQNVMQTAWLMLWLKVIIVSLCMGISH 366 (384)
Q Consensus 304 i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~-----------------l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~ 366 (384)
+.+.. .......+.+++... .+.|... ++++..+.+++++..|...++ ..+||+|++
T Consensus 233 i~V~~--~~l~a~ki~q~v~v~--~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 233 HPVLK--KRLAAKKIVKLVPPS--DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred eeccc--ccccccceEEEEecC--hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 76532 223334455543221 1222211 133455778888888887776 899999999
Q ss_pred hhhh-----chhhhhhc
Q 016712 367 KARG-----RGPFQLSE 378 (384)
Q Consensus 367 ~eR~-----~il~~F~~ 378 (384)
++|+ +++++|++
T Consensus 307 ~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLP 323 (844)
T ss_pred HHHhhHHHHHHHHHHhc
Confidence 9999 88999987
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=2e-29 Score=259.97 Aligned_cols=252 Identities=18% Similarity=0.125 Sum_probs=171.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 109 DIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.+.+.+...+| +||++|.++|+.+..+ ++++++||||||||++|++|++..+. .+.+++|++||
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlilaPT 293 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALMAPT 293 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEECCH
Confidence 34455566788 6999999999999876 36899999999999999999998873 37889999999
Q ss_pred HHHHHHHHHHHHHhCC--CCceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 183 RELAKQVEKEFHESAP--SLDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 183 ~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
++||.|+++.++++++ ++++.+++|+....+.. ..+.. .++|+||||+.+.+ .+.++++++|||||+|+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhh
Confidence 9999999999999876 57788889987765533 33333 48999999987643 45688999999999998
Q ss_pred ccCCChHHHHHHHH-HHCC--CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 257 MLSVGFAEDVEVIL-ERLP--QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 257 ~~~~~~~~~~~~il-~~l~--~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+. ......+ .... .++++++||||++++...+......+...+...+.. ...+..++......+.-.+
T Consensus 369 fg-----~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~----r~~i~~~~~~~~~~~~~~~ 439 (630)
T TIGR00643 369 FG-----VEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG----RKPITTVLIKHDEKDIVYE 439 (630)
T ss_pred cc-----HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC----CCceEEEEeCcchHHHHHH
Confidence 43 2222223 3322 268999999999887655543222222222211110 1112222211110000000
Q ss_pred HHHHH--------------------HhHhHHHHHHHHHh--hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------------LKQNVMQTAWLMLW--LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------------~~~~~~~~~~~l~~--~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ....++.++..+.. .+..+..+||+|+.++|++++++|++|+++|+
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 00000 01233444555543 37889999999999999999999999999875
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=3.2e-29 Score=270.03 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=184.5
Q ss_pred HHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
++.+.+.+. |+ +|+++|..+++.++.|+|++++||||+|||. |.++++..+. ..+++++||+||++|+.
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------~~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------KKGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH--------hcCCeEEEEeccHHHHH
Confidence 444556554 77 7999999999999999999999999999996 5556554442 23788999999999999
Q ss_pred HHHHHHHHhCCC--CceEEEECCCC-----hHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 188 QVEKEFHESAPS--LDTICVYGGTP-----ISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 188 q~~~~~~~~~~~--~~~~~~~g~~~-----~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
|+++.++.++.. +.+..++|+.. ..+....+.+ +++|+|+||++|.+.+. .+...++++|||||||+|++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 999999998764 34455555543 1223334443 58999999999998876 44566799999999999996
Q ss_pred -----------CChH-HHHHHHHHHCCC------------------------CCcEEEEEccCChh-HHHHHHHhcCCCe
Q 016712 260 -----------VGFA-EDVEVILERLPQ------------------------NRQSMMFSATMPPW-IRSLTNKYLKNPL 302 (384)
Q Consensus 260 -----------~~~~-~~~~~il~~l~~------------------------~~q~l~~SAT~~~~-~~~~~~~~l~~~~ 302 (384)
.||. .++..++..++. +.|++++|||++++ +.. ..++++.
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccc
Confidence 5674 677777777654 68999999999875 332 2334555
Q ss_pred EEEecCCCcccccCCeEEEEEEeccchhhHHHHHH----------HHhH---hHHHHHHHHHhhcceEEEecCCCChhhh
Q 016712 303 TVDLVGDSDQKLADGISLYSIATSMNMQKVENALF----------SLKQ---NVMQTAWLMLWLKVIIVSLCMGISHKAR 369 (384)
Q Consensus 303 ~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~----------~~~~---~~~~~~~~l~~~~~~v~~~hg~m~~~eR 369 (384)
.+.+.. ......++.+.++......+....++. +..+ .++.++..|...|+++..+||+|
T Consensus 293 ~~~v~~--~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 293 GFEVGS--PVFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred eEEecC--cccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 555432 234567787777765411122222221 1213 38899999999999999999999
Q ss_pred hchhhhhhcCCcccC
Q 016712 370 GRGPFQLSEMDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~~~~~V~ 384 (384)
++.+++|++|+++|+
T Consensus 366 ~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 366 ERKFEKFEEGEVDVL 380 (1176)
T ss_pred HHHHHHHHCCCCCEE
Confidence 334699999999985
No 55
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=4.7e-28 Score=266.22 Aligned_cols=254 Identities=17% Similarity=0.172 Sum_probs=188.6
Q ss_pred HHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 108 QDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 108 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.++.+.+++ .|| +|+++|.++++.+++|+|+++++|||+|||++++++++... ..+.++|||+||++|+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHH
Confidence 356667776 799 69999999999999999999999999999997666655432 2367899999999999
Q ss_pred HHHHHHHHHhCC----CCceEEEECCCChHHHHH---HHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 187 KQVEKEFHESAP----SLDTICVYGGTPISHQMR---ALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 187 ~q~~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
.|+.+.++.++. ++.+..++|+.+..++.. .+..+ ++|+|+||++|.+.+... . ..+++++||||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecc
Confidence 999999999764 345566788887665533 34444 899999999998876542 2 2679999999999998
Q ss_pred C-----------CChHHHHHH----HHH----------------------HCCCCCc-EEEEEccCChhHHHHHHHhcCC
Q 016712 259 S-----------VGFAEDVEV----ILE----------------------RLPQNRQ-SMMFSATMPPWIRSLTNKYLKN 300 (384)
Q Consensus 259 ~-----------~~~~~~~~~----il~----------------------~l~~~~q-~l~~SAT~~~~~~~~~~~~l~~ 300 (384)
+ .||.+++.. ++. .++...| ++++|||.+++.. ....+++
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 478877754 332 2344555 6779999987522 2234567
Q ss_pred CeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHH-------------h---HhHHHHHHHHHhhcceEEEecCCC
Q 016712 301 PLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL-------------K---QNVMQTAWLMLWLKVIIVSLCMGI 364 (384)
Q Consensus 301 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~-------------~---~~~~~~~~~l~~~~~~v~~~hg~m 364 (384)
+..+.+. .+.....++.+.++..... .+ ..++..+ . +.+++++..|...|+++..+||+
T Consensus 292 ~l~f~v~--~~~~~lr~i~~~yi~~~~~-~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 292 LLGFEVG--SGRSALRNIVDVYLNPEKI-IK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred CeEEEec--CCCCCCCCcEEEEEECCHH-HH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 7777663 3345677788887765422 12 2222211 1 23578899999999999999995
Q ss_pred ChhhhhchhhhhhcCCcccC
Q 016712 365 SHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 365 ~~~eR~~il~~F~~~~~~V~ 384 (384)
|.+++++|++|+++|+
T Consensus 367 ----R~~~l~~F~~G~~~VL 382 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYL 382 (1638)
T ss_pred ----HHHHHHHHHcCCCCEE
Confidence 9999999999999985
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=236.06 Aligned_cols=271 Identities=19% Similarity=0.207 Sum_probs=208.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+.....++++++.+.+-|+..|++.+.|.|..|+.. +++|.|.+++++|+||||++.-++-+..++. .|.+
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 346678999999999999999999999999999987 7899999999999999999999999988864 4788
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH----HHHhcCCCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM----RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~----~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
.|||+|..+||+|-++.|++.+.. +++.+-.|........ ......+||||||.+-+.+++..+ -.+.+++.|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 999999999999999999997764 4444444443222221 111224899999999997777766 678999999
Q ss_pred EEeCcccccCCChHHHHHHHHH---HCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec
Q 016712 250 VLDEADQMLSVGFAEDVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS 326 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~---~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 326 (384)
||||+|.+-+...+..+.-++. .+-+..|+|.+|||.-+. .++++.+--..+..+-.|. + +..+.+.+.
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPV---p----lErHlvf~~ 414 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPV---P----LERHLVFAR 414 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCC---C----hhHeeeeec
Confidence 9999998887656655555544 455789999999998765 5666666544444332111 1 222444555
Q ss_pred cchhhHHHHHH----------------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 327 MNMQKVENALF----------------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 327 ~~~~k~~~l~~----------------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+..+|.+.+.. +.++.+..++..|...|+++.+||+||+..+|+.+..+|.+++++++
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~V 494 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAV 494 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceE
Confidence 55666654432 22366778888898889999999999999999999999999998863
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=6.8e-28 Score=260.08 Aligned_cols=256 Identities=19% Similarity=0.246 Sum_probs=184.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 108 QDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.++.+.+.+....+|+++|+.+++.++.|+|++++||||+|||. |.+|+...+.. .+++++||+||++||.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHH
Confidence 45666676644447999999999999999999999999999997 66777665532 3688999999999999
Q ss_pred HHHHHHHHhCCCC--ce---EEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 188 QVEKEFHESAPSL--DT---ICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 188 q~~~~~~~~~~~~--~~---~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
|+++.++.++... .+ .+++|+.+..++. ..+.+ +++|+|+||++|.+.+..-. . +++++||||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhh
Confidence 9999999987533 32 2466887765543 23343 49999999999988776421 2 89999999999999
Q ss_pred C-----------CChHHH-HHHHH----------------------HHCCCCCc--EEEEEcc-CChhHHHHHHHhcCCC
Q 016712 259 S-----------VGFAED-VEVIL----------------------ERLPQNRQ--SMMFSAT-MPPWIRSLTNKYLKNP 301 (384)
Q Consensus 259 ~-----------~~~~~~-~~~il----------------------~~l~~~~q--~l~~SAT-~~~~~~~~~~~~l~~~ 301 (384)
+ .||..+ ++.++ +.++.+.| ++++||| .|..+.. .+++++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 8 577653 44433 23445555 5678999 5655432 345566
Q ss_pred eEEEecCCCcccccCCeEEEEEEeccchhhHHHHHH----------HHh---HhHHHHHHHHHhhcceEEEecCCCChhh
Q 016712 302 LTVDLVGDSDQKLADGISLYSIATSMNMQKVENALF----------SLK---QNVMQTAWLMLWLKVIIVSLCMGISHKA 368 (384)
Q Consensus 302 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~----------~~~---~~~~~~~~~l~~~~~~v~~~hg~m~~~e 368 (384)
..+.+.. ......++.+.++.......+...++. +.. +.++.++..|...|+++..+||+|++
T Consensus 290 l~~~v~~--~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 290 LGFEVGG--GSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred cceEecC--ccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 6666532 234567787777654421222222221 222 66888999999999999999999973
Q ss_pred hhchhhhhhcCCcccC
Q 016712 369 RGRGPFQLSEMDVSIY 384 (384)
Q Consensus 369 R~~il~~F~~~~~~V~ 384 (384)
+++++|++|+++|+
T Consensus 366 --~~l~~Fr~G~~~vL 379 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVL 379 (1171)
T ss_pred --HHHHHHHcCCCCEE
Confidence 79999999999985
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=250.91 Aligned_cols=266 Identities=21% Similarity=0.291 Sum_probs=196.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
....+..+|.+.|+..++.||.+|+..+.+|+|+||+++||||||++|++|++++++. +...++|||.||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnAL 127 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNAL 127 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhh
Confidence 3455688899999999999999999999999999999999999999999999999987 344589999999999
Q ss_pred HHHHHHHHHHhCCC----CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc----CCCCCCccEEEEeCcccc
Q 016712 186 AKQVEKEFHESAPS----LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN----ALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 186 a~q~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~----~~~~~~l~~vViDEah~~ 257 (384)
|+++.++|.++... +.+..++|+....+....+.+.++|+++||++|...+..+ ...++++++||+||+|.+
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 99999999987543 4455566766666666777888999999999998866443 335778999999999987
Q ss_pred cCCChHHHHHHHHHHC-------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEec----
Q 016712 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATS---- 326 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l-------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~---- 326 (384)
-.. |+.++..+++++ +.+.|+|+.|||+.+. .+.+..+........+. +.........+.....
T Consensus 208 rGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~ 282 (851)
T COG1205 208 RGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRE 282 (851)
T ss_pred ccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchh
Confidence 665 888887777765 3478999999998766 55666666655544332 2233444444444333
Q ss_pred -------cchhhHHHHHHHH-------------hHhHHHHH----HHHHhhc----ceEEEecCCCChhhhhchhhhhhc
Q 016712 327 -------MNMQKVENALFSL-------------KQNVMQTA----WLMLWLK----VIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 327 -------~~~~k~~~l~~~~-------------~~~~~~~~----~~l~~~~----~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
........+.... .+.++... ..+...+ ..+..++|+|..++|+++..+|++
T Consensus 283 ~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~ 362 (851)
T COG1205 283 LAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE 362 (851)
T ss_pred hhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc
Confidence 1111111111111 12333332 2333334 679999999999999999999999
Q ss_pred CCccc
Q 016712 379 MDVSI 383 (384)
Q Consensus 379 ~~~~V 383 (384)
|++.+
T Consensus 363 g~~~~ 367 (851)
T COG1205 363 GELLG 367 (851)
T ss_pred CCccE
Confidence 99875
No 59
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=4.1e-28 Score=240.04 Aligned_cols=256 Identities=19% Similarity=0.245 Sum_probs=194.2
Q ss_pred CCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 103 KLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 103 ~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.++.+..+++.+.+ ..| ++|..|++++..|..+ ++.+++|+.|||||++++++++..+. .|.|
T Consensus 244 ~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q 313 (677)
T COG1200 244 PLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQ 313 (677)
T ss_pred CCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------cCCe
Confidence 34456666666654 577 5999999999999876 58999999999999999999999984 4899
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHH---HHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQ---MRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~---~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
+...+||.-||.|+++.+.++++ ++++..++|....... ...+.+| .||+||| +.+.+..+.|+++++|
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLV 388 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLV 388 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEE
Confidence 99999999999999999999886 5677778887665443 3444555 9999999 8888889999999999
Q ss_pred EEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEEccCChhHHHHHHHhcCC------------CeEEEecCCCc-----
Q 016712 250 VLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPWIRSLTNKYLKN------------PLTVDLVGDSD----- 311 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~SAT~~~~~~~~~~~~l~~------------~~~i~~~~~~~----- 311 (384)
||||-|+ |+..-...+..-.. .+.+++|||||.|++..+..-.-.+ |+...+.+..+
T Consensus 389 IiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 389 IIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred EEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHH
Confidence 9999999 99988888888777 7899999999999988776544333 33333322221
Q ss_pred ----ccccCCeEEEEEEeccc-hhhHHHHHHHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 312 ----QKLADGISLYSIATSMN-MQKVENALFSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 312 ----~~~~~~i~~~~~~~~~~-~~k~~~l~~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+..+-+.|+++.--+ .++.+ .+.+...+..+... +.++..+||.|+.+|++++|++|++|++||+
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~------l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLE------LQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccch------hhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 12333333443332211 22222 23444555555432 7789999999999999999999999999985
No 60
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=1.1e-27 Score=207.00 Aligned_cols=163 Identities=32% Similarity=0.563 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC--C
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS--L 200 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~ 200 (384)
||+|.++++.+.+|+++++.+|||+|||++|.+|++..+.+ ....+++|++|+++|++|+.+.+..++.. +
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~-------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE-------GKDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc-------CCCceEEEEeeccccccccccccccccccccc
Confidence 79999999999999999999999999999999999988865 22348999999999999999999998864 6
Q ss_pred ceEEEECCCChH-HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC--CCC
Q 016712 201 DTICVYGGTPIS-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNR 277 (384)
Q Consensus 201 ~~~~~~g~~~~~-~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~--~~~ 277 (384)
.+..++++.... .....+..+++|+|+||+++.+.+..+..++.++++|||||+|.+..+++...+..+++.+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 778888887755 44444556799999999999999988666778899999999999999888999999999874 369
Q ss_pred cEEEEEccCChhHHH
Q 016712 278 QSMMFSATMPPWIRS 292 (384)
Q Consensus 278 q~l~~SAT~~~~~~~ 292 (384)
|++++|||+++.+++
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999976654
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=2e-27 Score=257.29 Aligned_cols=238 Identities=18% Similarity=0.184 Sum_probs=165.8
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhhhc----cCCCCCCEEEEEecCHHHHHHHHHHHHHh--------------CCCCce
Q 016712 141 GRARTGTGKTLAFGIPILDKIIKFNEK----HGRGRNPLCLVLAPTRELAKQVEKEFHES--------------APSLDT 202 (384)
Q Consensus 141 i~a~TGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~~~lvl~Pt~~La~q~~~~~~~~--------------~~~~~~ 202 (384)
|++|||||||++|.+|++..+...... .....+.++|||+|+++|++|+++.++.. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998753211 11124689999999999999999988641 125677
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEEeCcccccCCChHHH----HHHHHHHCCCCC
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVLDEADQMLSVGFAED----VEVILERLPQNR 277 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vViDEah~~~~~~~~~~----~~~il~~l~~~~ 277 (384)
.+.+|+.+..+..+.+.+.+||+|+||++|..++.++ ...++++++|||||+|.+.+..++.+ ++.+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8889999888877777788999999999998887654 34689999999999999997655544 444445556789
Q ss_pred cEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEecc-c--------------------hh----
Q 016712 278 QSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSM-N--------------------MQ---- 330 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~--------------------~~---- 330 (384)
|+|++|||+++. .++. .|+. +++.|...+... ...+..+ +.... . .+
T Consensus 161 QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~~~~~r---~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVA-AFLGGDRPVTVVNPPAMR---HPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred eEEEEEeeCCCH-HHHH-HHhcCCCCEEEECCCCCc---ccceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 999999999874 5555 4543 355553221111 0111111 11000 0 00
Q ss_pred ----------hHHHHHHHHhHhHHHHHHHHHhhc---------------------------------ceEEEecCCCChh
Q 016712 331 ----------KVENALFSLKQNVMQTAWLMLWLK---------------------------------VIIVSLCMGISHK 367 (384)
Q Consensus 331 ----------k~~~l~~~~~~~~~~~~~~l~~~~---------------------------------~~v~~~hg~m~~~ 367 (384)
+.-+++.+.++.+++++..|+... ..+.++||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 000113344566777777665431 2367899999999
Q ss_pred hhhchhhhhhcCCcccC
Q 016712 368 ARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 368 eR~~il~~F~~~~~~V~ 384 (384)
+|+.++++|++|+++|+
T Consensus 315 eR~~IE~~fK~G~LrvL 331 (1490)
T PRK09751 315 QRAITEQALKSGELRCV 331 (1490)
T ss_pred HHHHHHHHHHhCCceEE
Confidence 99999999999998874
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.5e-27 Score=234.85 Aligned_cols=255 Identities=19% Similarity=0.244 Sum_probs=194.5
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 110 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
+...|.+ +||..+++-|.++|..+++|+|+++..|||+||++||.+|++-. .+.+|||+|..+|.++
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHH
Confidence 3345666 59999999999999999999999999999999999999999853 3469999999999999
Q ss_pred HHHHHHHhCCCCceEEEECCCChHHHHH---HHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC--h
Q 016712 189 VEKEFHESAPSLDTICVYGGTPISHQMR---ALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--F 262 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~--~ 262 (384)
+.+.++..+ +.+.++.+..+..+... .+..+ .++++-+|++|..--..+.+.-..+.++|||||||+++|| |
T Consensus 73 QV~~l~~~G--i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 73 QVDQLEAAG--IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred HHHHHHHcC--ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCcc
Confidence 999999987 67777777765554433 33333 7999999999866544444445678999999999999998 9
Q ss_pred HHHHHHHHH---HCCCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH--
Q 016712 263 AEDVEVILE---RLPQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA-- 335 (384)
Q Consensus 263 ~~~~~~il~---~l~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l-- 335 (384)
++++..+-. .++ +.+++.+|||.++.+...+...+. ++..+...-+ .+++............+...+
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-----RpNi~~~v~~~~~~~~q~~fi~~ 224 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD-----RPNLALKVVEKGEPSDQLAFLAT 224 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----CchhhhhhhhcccHHHHHHHHHh
Confidence 888777644 344 899999999999999887776664 4444433211 222221111111112222222
Q ss_pred -----------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 -----------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 -----------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+..+..++++++.|...|+++..|||||+.++|+.+.++|.+++++|+
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ii 284 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVM 284 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEE
Confidence 2345588999999999999999999999999999999999999999874
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=237.73 Aligned_cols=187 Identities=21% Similarity=0.301 Sum_probs=153.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 104 LDISQDIVAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 104 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
..+++.+...+...|+..+++.|+.++.... +|+|+|+++|||||||+++++.++..+.+ .+.+++||+|+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPl 85 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPL 85 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeCh
Confidence 3467888888888899889999999888754 55999999999999999999999999865 25789999999
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC
Q 016712 183 RELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG 261 (384)
Q Consensus 183 ~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~ 261 (384)
++||+|.+++|+++- -++++...+|+...... ...+++|+|+||+++...+++...+..++++|||||+|.+.+..
T Consensus 86 kALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFSRLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhhhHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999999999322 16888899998765442 22358999999999988888887789999999999999888887
Q ss_pred hHHHHHHHHHHCCC---CCcEEEEEccCChhHHHHHHHhcCCCe
Q 016712 262 FAEDVEVILERLPQ---NRQSMMFSATMPPWIRSLTNKYLKNPL 302 (384)
Q Consensus 262 ~~~~~~~il~~l~~---~~q~l~~SAT~~~~~~~~~~~~l~~~~ 302 (384)
.++.++.++.+++. .+|++++|||+|+. .+++...-.+++
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~ 205 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV 205 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc
Confidence 88888888877654 47999999999875 445444433433
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=1.7e-24 Score=217.97 Aligned_cols=243 Identities=12% Similarity=0.043 Sum_probs=159.2
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.|+.+.+++++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 347999999999999999999999999999999764432 22222 1234899999999999999999998763
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
...+..+.+|.... .+.+|+|+||+++..... ..++++++|||||||++... .+..++..+++.
T Consensus 184 ~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~ 249 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNC 249 (501)
T ss_pred ccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhcc
Confidence 23344455554332 247999999999875432 24688999999999998764 456677777777
Q ss_pred CcEEEEEccCChhHHHHHH-HhcCCCeEEEec-------------------CCCcccccCCeE--EE---EEEeccchhh
Q 016712 277 RQSMMFSATMPPWIRSLTN-KYLKNPLTVDLV-------------------GDSDQKLADGIS--LY---SIATSMNMQK 331 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~~~~~-~~l~~~~~i~~~-------------------~~~~~~~~~~i~--~~---~~~~~~~~~k 331 (384)
.++++||||+++....... ..+-.++...+. ..........+. .+ +......+.+
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 8999999999754322111 111112211110 000000000000 00 0000001111
Q ss_pred HHHHH----------------HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 332 VENAL----------------FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 332 ~~~l~----------------~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
...+. +...++++.++..|...|..+..+||+|+.++|+++++.|++|+..|
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~v 397 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGII 397 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeE
Confidence 11111 11226677888888888999999999999999999999999988654
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=2.9e-23 Score=217.18 Aligned_cols=234 Identities=17% Similarity=0.160 Sum_probs=168.1
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CCC--ce
Q 016712 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSL--DT 202 (384)
Q Consensus 126 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~--~~ 202 (384)
-.+.+..+..+.++|++|+||||||..|.+++++.. ..+++++|+.|++++|.|+++++.+.. ..+ .+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~---------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP---------GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh---------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 345566677788999999999999999999998765 135689999999999999999986543 222 23
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc-cccCCChHHH-HHHHHHHCCCCCcEE
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSM 280 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah-~~~~~~~~~~-~~~il~~l~~~~q~l 280 (384)
....++.. ....+.+|+|+|||.|++.+... ..++++++|||||+| ++++.++.-. +..+...++++.|+|
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 33333221 22335799999999999988764 578999999999999 5777666543 345666788899999
Q ss_pred EEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH-----HHHH-------------HHhHh
Q 016712 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE-----NALF-------------SLKQN 342 (384)
Q Consensus 281 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l~~-------------~~~~~ 342 (384)
+||||++... ...|+.++..|...+.. ..+.+++...... .+.. .+.. ...++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr~-----~pVe~~y~~~~~~-~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 221 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGRS-----FPVEIRYLPLRGD-QRLEDAVSRAVEHALASETGSILVFLPGQAE 221 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCcc-----eeeeeEEeecchh-hhHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 9999998753 46677776666654321 1244555443221 1211 1111 11256
Q ss_pred HHHHHHHHHh---hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 343 VMQTAWLMLW---LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 343 ~~~~~~~l~~---~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+++..|.. .++.+..+||+|+.++|.++++.|++|+.+|+
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVl 266 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVV 266 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEE
Confidence 6677777765 37899999999999999999999999988764
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.92 E-value=6.1e-24 Score=205.99 Aligned_cols=235 Identities=16% Similarity=0.104 Sum_probs=152.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH-----
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS----- 212 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~----- 212 (384)
++++++|||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEM 72 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhcc
Confidence 58999999999999999999987643 34678999999999999999999998642 344444432210
Q ss_pred -------HHHHHH------hcCCCEEEECchhHHHHHHccC----CCCC--CccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 213 -------HQMRAL------DYGVDAVVGTPGRVIDLIKRNA----LNLS--EVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 213 -------~~~~~~------~~~~~IlV~Tp~~l~~~l~~~~----~~~~--~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
...... ....+|+|+||+++...+..+. ..+. ..++|||||+|.+.+.++.. +..+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l 151 (358)
T TIGR01587 73 GDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVL 151 (358)
T ss_pred CCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHH
Confidence 000011 1136899999999988776521 1111 23789999999998875443 55555555
Q ss_pred C-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEE-eccchhh---HHHH------------H
Q 016712 274 P-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIA-TSMNMQK---VENA------------L 336 (384)
Q Consensus 274 ~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~k---~~~l------------~ 336 (384)
. .+.|+++||||+|+.+.++...+...+......... ......+.+.. ......+ ...+ +
T Consensus 152 ~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 152 KDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 4 479999999999987777766654332211111000 00001111111 1111111 1111 2
Q ss_pred HHHhHhHHHHHHHHHhhcc--eEEEecCCCChhhhhch----hhhhhcCCcccC
Q 016712 337 FSLKQNVMQTAWLMLWLKV--IIVSLCMGISHKARGRG----PFQLSEMDVSIY 384 (384)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~--~v~~~hg~m~~~eR~~i----l~~F~~~~~~V~ 384 (384)
++..+.++.++..|...+. .+..+||+|++.+|+++ +++|++|+..|+
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~il 282 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVI 282 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEE
Confidence 2344777788888877655 59999999999999774 899999987653
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.92 E-value=2.5e-23 Score=212.93 Aligned_cols=242 Identities=15% Similarity=0.099 Sum_probs=167.8
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHH---------HHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLA---------FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~---------~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
..+|+++++.+++|+++|++|+||||||.+ |++|.+..+.... ....+++++|++||++||.|+...+
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHH
Confidence 458999999999999999999999999997 4455555442111 0123568999999999999999998
Q ss_pred HHhC-----CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHH
Q 016712 194 HESA-----PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (384)
Q Consensus 194 ~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~ 268 (384)
.+.. .+.++.+.+|+... ........+.+|+|+|++.. ...++++++|||||||.+...+ ..+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHH
Confidence 7643 24567788888763 22223333679999997521 1247889999999999987764 44455
Q ss_pred HHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEecc---------chhh---HHHH
Q 016712 269 ILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSM---------NMQK---VENA 335 (384)
Q Consensus 269 il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---------~~~k---~~~l 335 (384)
+++.+. ..+|+++||||++.++..+ ..++.++..|.+.+. ....+.++++.... ...+ ...+
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L 387 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTAL 387 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----cCCCeEEEEeecCcccccchhhhHHHHHHHHHHH
Confidence 555443 3469999999999888776 688899988887432 23445555543221 0111 1111
Q ss_pred H-------------HHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhh-hcCCcccC
Q 016712 336 L-------------FSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQL-SEMDVSIY 384 (384)
Q Consensus 336 ~-------------~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F-~~~~~~V~ 384 (384)
. ....++++.+...|... ++.+..+||+|++. ++++++| ++|+.+|+
T Consensus 388 ~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kIL 450 (675)
T PHA02653 388 KKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSII 450 (675)
T ss_pred HHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEE
Confidence 1 11225666777777766 78999999999974 5778888 68887763
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.91 E-value=5.4e-23 Score=215.49 Aligned_cols=234 Identities=16% Similarity=0.155 Sum_probs=166.6
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CC--Cce
Q 016712 126 QKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PS--LDT 202 (384)
Q Consensus 126 Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~--~~~ 202 (384)
-.+.+..+.++++++++|+||||||.+|.+++++.. ..+++++|+.||+++|.|+++.+.+.. .. ..+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~---------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG---------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC---------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345566777889999999999999999999988653 123589999999999999999986543 22 234
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCCh-HHHHHHHHHHCCCCCcEE
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGF-AEDVEVILERLPQNRQSM 280 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~~-~~~~~~il~~l~~~~q~l 280 (384)
....++... .....+|+|+|||+|.+++.. ...++++++|||||+|. .++..+ ...+..+++.++++.|++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 444444321 122468999999999998875 45799999999999996 444433 223455667788899999
Q ss_pred EEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHH-----HH-------------HHHhHh
Q 016712 281 MFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVEN-----AL-------------FSLKQN 342 (384)
Q Consensus 281 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~-----l~-------------~~~~~~ 342 (384)
+||||++.. ....|+.++..|...+. ...+.+++..... ..+.+. +. ....++
T Consensus 154 lmSATl~~~---~l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 154 IMSATLDND---RLQQLLPDAPVIVSEGR-----SFPVERRYQPLPA-HQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred EEecCCCHH---HHHHhcCCCCEEEecCc-----cccceEEeccCch-hhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 999999865 23567777666665432 1224555544332 222221 11 112256
Q ss_pred HHHHHHHHHh---hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 343 VMQTAWLMLW---LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 343 ~~~~~~~l~~---~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++.++..|.. .++.+..+||+|+.++|+++++.|++|+.+|+
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVl 269 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVV 269 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEE
Confidence 7788888876 57889999999999999999999999988764
No 69
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=2.8e-23 Score=211.30 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=135.7
Q ss_pred cCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhh-ccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNE-KHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.+|.+++.+|.+++|.+.+. .|+|||||||+|||.+|++.+++.+.+... .....++.+++||+|+++||.++.+.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 47788999999999998754 699999999999999999999999875221 1122357789999999999999999999
Q ss_pred HhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC----CCCCCccEEEEeCcccccCCChHHHHHH
Q 016712 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA----LNLSEVQFVVLDEADQMLSVGFAEDVEV 268 (384)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~----~~~~~l~~vViDEah~~~~~~~~~~~~~ 268 (384)
+.+. ++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++|||||+|.+-+. .|+.++.
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 9876 78888899987765443 23489999999998 4444332 24678999999999976665 8889888
Q ss_pred HHHHCC-------CCCcEEEEEccCChh
Q 016712 269 ILERLP-------QNRQSMMFSATMPPW 289 (384)
Q Consensus 269 il~~l~-------~~~q~l~~SAT~~~~ 289 (384)
|+.++. ...+++++|||+|+-
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~ 288 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY 288 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH
Confidence 887753 367899999999975
No 70
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.90 E-value=1.3e-23 Score=196.11 Aligned_cols=210 Identities=25% Similarity=0.380 Sum_probs=155.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHh---C--CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHES---A--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~---~--~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
+.++++|+-|+++|++|.++.++++ . +.++...+.||.-...+...+.+|.+|+||||+++.+.+..+.+.+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 4578999999999999999966654 3 2345557788888899999999999999999999999999999999999
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCC------CCcEEEEEccCCh-hHHHHHHHhcCCCeEEEecCCCcccccCCeE
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ------NRQSMMFSATMPP-WIRSLTNKYLKNPLTVDLVGDSDQKLADGIS 319 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~------~~q~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~ 319 (384)
+++|+||++.++..++...+..+...+|. ..|.+++|||+.- ++..+.++.+.-|..+.+.++. .+.+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD--~vpetvH 442 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED--LVPETVH 442 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc--ccchhhc
Confidence 99999999999999988888888777763 5799999999864 5677888888888888875442 2222222
Q ss_pred EEEEEeccc-hh-------------------------------------hHHHHHHHHh--------------HhHHHHH
Q 016712 320 LYSIATSMN-MQ-------------------------------------KVENALFSLK--------------QNVMQTA 347 (384)
Q Consensus 320 ~~~~~~~~~-~~-------------------------------------k~~~l~~~~~--------------~~~~~~~ 347 (384)
+....+... +. |.+.-+..++ +.+..+.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 222111100 00 0111111111 3334555
Q ss_pred HHHHhh---cceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 348 WLMLWL---KVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 348 ~~l~~~---~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.++.. .+.|.++||+..+.||++.++.|+.+++..
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkf 561 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKF 561 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEE
Confidence 555554 468999999999999999999999998753
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=1.6e-21 Score=188.27 Aligned_cols=234 Identities=18% Similarity=0.138 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC----
Q 016712 125 IQKAVLEPAMQGRD--MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP---- 198 (384)
Q Consensus 125 ~Q~~~i~~i~~g~d--~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~---- 198 (384)
+|.++++.+.++.+ +++++|||+|||++|++|++.. +.+++|++|+++|++|+++.+++++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999998874 7889999999999999998842 34589999999999999999888752
Q ss_pred --CCceEEEECCCChH--HH-----------------HH-HHhcCCCEEEECchhHHHHHHccCC--------CCCCccE
Q 016712 199 --SLDTICVYGGTPIS--HQ-----------------MR-ALDYGVDAVVGTPGRVIDLIKRNAL--------NLSEVQF 248 (384)
Q Consensus 199 --~~~~~~~~g~~~~~--~~-----------------~~-~~~~~~~IlV~Tp~~l~~~l~~~~~--------~~~~l~~ 248 (384)
+..+..+.|..... .. .. .....++|+++||+.+..++..... .+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 33344444432111 00 00 1123588999999999766543211 2578999
Q ss_pred EEEeCcccccCCC-----hHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHh--cCCCeEEEecCC----Cc------
Q 016712 249 VVLDEADQMLSVG-----FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY--LKNPLTVDLVGD----SD------ 311 (384)
Q Consensus 249 vViDEah~~~~~~-----~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~i~~~~~----~~------ 311 (384)
|||||+|.+..++ +......+++......+++++|||+++.+...+... +..+..+ +.+. .+
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEA 227 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhc
Confidence 9999999987543 122333444444446799999999999877777654 4444322 2222 00
Q ss_pred -------ccccCCeEEEEEEeccchhhHHHH---------------------HHHHhHhHHHHHHHHHhhc--ceEEEec
Q 016712 312 -------QKLADGISLYSIATSMNMQKVENA---------------------LFSLKQNVMQTAWLMLWLK--VIIVSLC 361 (384)
Q Consensus 312 -------~~~~~~i~~~~~~~~~~~~k~~~l---------------------~~~~~~~~~~~~~~l~~~~--~~v~~~h 361 (384)
.++...+.+.+.... ..+.+.+ +++..+.+++++..|...+ ..+..+|
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~ 305 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIPAP--DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRIT 305 (357)
T ss_pred cccccccceeccceEEEEEeCC--chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeee
Confidence 012234444444311 1111111 2223367778888888754 5789999
Q ss_pred CCCChhhhhchh
Q 016712 362 MGISHKARGRGP 373 (384)
Q Consensus 362 g~m~~~eR~~il 373 (384)
|.|++.+|++++
T Consensus 306 g~~~~~~R~~~~ 317 (357)
T TIGR03158 306 GFAPKKDRERAM 317 (357)
T ss_pred cCCCHHHHHHhc
Confidence 999999998764
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=2.4e-21 Score=200.83 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=122.6
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g---~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+|++|+++++.+.++ +++++.|+||||||.+|+.++...+. .|.++|||+|+++|+.|+++.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999999874 78999999999999999888777663 36789999999999999999999977
Q ss_pred CCCceEEEECCCChHHHHHHH---h-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-----h-HHHHH
Q 016712 198 PSLDTICVYGGTPISHQMRAL---D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVE 267 (384)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~---~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~-~~~~~ 267 (384)
+..+..++|+.+..+....+ . ..++|+|||++.+. ..++++++|||||+|...-.+ | ..++.
T Consensus 215 -g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va 286 (679)
T PRK05580 215 -GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA 286 (679)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH
Confidence 46788899988766554433 2 35899999998763 457899999999999765321 1 12222
Q ss_pred HHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 268 VILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+++....+.|++++|||++.+....+.
T Consensus 287 -~~ra~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 287 -VVRAKLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred -HHHhhccCCCEEEEcCCCCHHHHHHHh
Confidence 333445689999999998877655543
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=2.7e-23 Score=193.75 Aligned_cols=262 Identities=16% Similarity=0.158 Sum_probs=182.3
Q ss_pred HHHHHHHHc-CCCCC-cHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 109 DIVAALARR-GISKL-FPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 109 ~l~~~l~~~-g~~~~-~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+..+|++. |+.++ ++.|+.|+..+.++ +|+.+++|||+||++||.+|.+.+ +..+||+.|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 455677763 66554 89999999987665 699999999999999999999865 4489999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---h---cCCCEEEECchhHHHHHH----ccCCCCCCccEEEEeCcc
Q 016712 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---D---YGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~IlV~Tp~~l~~~l~----~~~~~~~~l~~vViDEah 255 (384)
+.++.+.+..+- +++.-+.+..+..+..+.+ . ....+++-||+....-.. +....-.-+.++||||||
T Consensus 74 IkDQiDHL~~LK--Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 74 IKDQIDHLKRLK--VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHHHHHhcC--CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhh
Confidence 999999998865 3444455554444433333 2 246899999997654332 223334568999999999
Q ss_pred cccCCC--hHHHHHHHHHH--CCCCCcEEEEEccCChhHHHHHHH--hcCCCeEEEecCCCcc-cccCCeEEEEEE----
Q 016712 256 QMLSVG--FAEDVEVILER--LPQNRQSMMFSATMPPWIRSLTNK--YLKNPLTVDLVGDSDQ-KLADGISLYSIA---- 324 (384)
Q Consensus 256 ~~~~~~--~~~~~~~il~~--l~~~~q~l~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~-~~~~~i~~~~~~---- 324 (384)
++..|| |.+++-.+-.. .-+++..+.+|||..+.+++.+-. -+++|+.|--.|.-+. ...+..-...|.
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLT 231 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhH
Confidence 999998 88877665332 235789999999999998876543 4567876532221110 000000000000
Q ss_pred --------eccchh------h----HHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 325 --------TSMNMQ------K----VENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 325 --------~~~~~~------k----~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+-...+ | .-.+.+..++.+++++..+...|+.+..||+||...||.++-++|-++++.|+
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 000000 0 00112335588999999999999999999999999999999999999999874
No 74
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.89 E-value=3.2e-22 Score=184.17 Aligned_cols=269 Identities=16% Similarity=0.171 Sum_probs=195.7
Q ss_pred CCccCCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.-+++|++....+.|++. ..++++|.|..+|+..+.|.|.++..|||.||++||.+|++.. .+.+|
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~al 138 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFAL 138 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceE
Confidence 3445678888888888874 6788999999999999999999999999999999999999854 56799
Q ss_pred EEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH---HHHH---hcCCCEEEECchhHHHHH-----HccCCCCCCc
Q 016712 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ---MRAL---DYGVDAVVGTPGRVIDLI-----KRNALNLSEV 246 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~---~~~~~IlV~Tp~~l~~~l-----~~~~~~~~~l 246 (384)
||+|...|++++.-.+++++- ....+....+..+. ...+ .....+++.||+++...- ....+....+
T Consensus 139 vi~plislmedqil~lkqlgi--~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQLGI--DASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred eechhHHHHHHHHHHHHHhCc--chhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 999999999999999999873 33334333332221 1111 123579999999986432 1234456778
Q ss_pred cEEEEeCcccccCCC--hHHHHHH--HHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEE
Q 016712 247 QFVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (384)
Q Consensus 247 ~~vViDEah~~~~~~--~~~~~~~--il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~ 322 (384)
.++.|||+|+...|| |++++.. ++++--++..+|+++||.++.+...++..+.--.-+.+... -...++...+
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~yev 293 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKYEV 293 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCceeEe
Confidence 999999999999987 7777654 46666678999999999999888877766542111111101 1222333333
Q ss_pred EEeccchhh-HHHHHH---------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 323 IATSMNMQK-VENALF---------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 323 ~~~~~~~~k-~~~l~~---------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+..++. .+.+.. ...+..++++..|..+|+.+..||+.|.+++|.-+.+.|-.|+|.|+
T Consensus 294 ~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 294 RQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred eeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEE
Confidence 333333222 222222 23378889999999999999999999999999999999999999874
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=1.8e-22 Score=211.06 Aligned_cols=256 Identities=15% Similarity=0.154 Sum_probs=189.8
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
+....|.. .|...+++-|.++|..++.|+|+++.+|||+||++||.+|++-. ++.+|||.|..+|++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 34444444 69999999999999999999999999999999999999998742 558999999999999
Q ss_pred HHHHHHHHhCCCCceEEEECCCChHHH---HHHHhc---CCCEEEECchhHHHHH--HccCCCCCC---ccEEEEeCccc
Q 016712 188 QVEKEFHESAPSLDTICVYGGTPISHQ---MRALDY---GVDAVVGTPGRVIDLI--KRNALNLSE---VQFVVLDEADQ 256 (384)
Q Consensus 188 q~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~IlV~Tp~~l~~~l--~~~~~~~~~---l~~vViDEah~ 256 (384)
++...+... +++...+.++....++ .+.+.. .++|+..||+++...- ......+.. +.++||||||+
T Consensus 319 DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 319 DQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 888888443 4777778877776533 333333 3799999999886432 111223334 89999999999
Q ss_pred ccCCC--hHHHHHHHHHHC--CCCCcEEEEEccCChhHHHHHHHhcC--CCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 257 MLSVG--FAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLK--NPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 257 ~~~~~--~~~~~~~il~~l--~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
+..|| |++.+..+-... .+.+++|++|||.+.+++..+-.-++ ++..+.- .....++...+.... ...
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-----sfnR~NL~yeV~~k~-~~~ 470 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS-----SFNRPNLKYEVSPKT-DKD 470 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-----cCCCCCceEEEEecc-Ccc
Confidence 99998 888877663322 23589999999999999887766554 5554432 133344433332222 111
Q ss_pred hHHHH---------------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENA---------------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l---------------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
....+ .+..+..+++++..|+..|+.++.||+||++.+|+.|..+|-.++++|+
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~Vi 539 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVI 539 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEE
Confidence 11111 2234488999999999999999999999999999999999999999874
No 76
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.89 E-value=1.9e-21 Score=170.98 Aligned_cols=183 Identities=42% Similarity=0.694 Sum_probs=153.7
Q ss_pred cCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.++..++++|.++++.+..+ +++++.++||+|||.++..+++..+.. .....++|++|+..++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46778999999999999998 999999999999999999998888743 2246799999999999999999998
Q ss_pred hCCCC--ceEEEECCCChHHHHHHHhcCC-CEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 196 SAPSL--DTICVYGGTPISHQMRALDYGV-DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 196 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~-~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
.+... ......++.........+..+. +|+++|++.+.+.+.........++++||||+|.+....+...+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 156 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL 156 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh
Confidence 87542 3344555555455555555555 99999999999999887777788999999999998875688889999998
Q ss_pred CCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 273 LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 273 l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
+++..+++++|||+++........+..+.+.+..
T Consensus 157 ~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 157 LPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 8889999999999999999999999887777764
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.88 E-value=2.5e-20 Score=197.82 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=128.0
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+++++|.+++..++.+ |.++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.+++++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 346899999999988876 9999999999999999998887762 2467899999999999999999998763
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
...+..++|+....+. ..+..+.+|+|+||+.+...+..+.+.+.++++|||||||++........+........+.
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 2366677777665543 3344457999999999988888888889999999999999987654334444444444556
Q ss_pred CcEEEEEccCChh
Q 016712 277 RQSMMFSATMPPW 289 (384)
Q Consensus 277 ~q~l~~SAT~~~~ 289 (384)
..+++||||+...
T Consensus 163 ~~il~lTaTP~~~ 175 (773)
T PRK13766 163 PLVLGLTASPGSD 175 (773)
T ss_pred CEEEEEEcCCCCC
Confidence 7899999997533
No 78
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.6e-20 Score=178.10 Aligned_cols=222 Identities=17% Similarity=0.105 Sum_probs=163.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~- 198 (384)
-.++.||.......+.+ |.|++.|||-|||.++.+-+...+.. ..+ ++|+++||+.|+.|+++.|.+...
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 36899999988887764 99999999999999999988888754 334 899999999999999999999763
Q ss_pred -CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCC
Q 016712 199 -SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 199 -~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~ 277 (384)
.-.+..++|.....+....+.. .+|+|+||..+.+-+..+.+++.++.++|+||||+.....-+..+....-+-.+++
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 3457788888887777666666 69999999999999999999999999999999999887766666666566667788
Q ss_pred cEEEEEccCChh---HHHHHHHhcCCCeEEEecCCCcccccCC---eEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHH
Q 016712 278 QSMMFSATMPPW---IRSLTNKYLKNPLTVDLVGDSDQKLADG---ISLYSIATSMNMQKVENALFSLKQNVMQTAWLML 351 (384)
Q Consensus 278 q~l~~SAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~~~~~~---i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~ 351 (384)
.++++||||-.. +++.+....-+.+.+++..+. .+..+ +...++.+.. ......+...+.+......+.+.
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~--DV~~Yv~~~kve~ikV~l-p~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDP--DVRPYVKKIKVEWIKVDL-PEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCc--cHHHhhccceeEEEeccC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998665 444555555566677664333 33333 3334444432 22233344444444444444444
Q ss_pred hhc
Q 016712 352 WLK 354 (384)
Q Consensus 352 ~~~ 354 (384)
..|
T Consensus 241 ~~g 243 (542)
T COG1111 241 ELG 243 (542)
T ss_pred HcC
Confidence 444
No 79
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=3.6e-20 Score=190.73 Aligned_cols=146 Identities=21% Similarity=0.331 Sum_probs=126.0
Q ss_pred cCCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 102 SKLDISQDIVAALA-----RRGISKL---FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 102 ~~l~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
+.+++...+.+.+. .+||..| +|+|.++++.+..++++++.++||+|||++|++|++..+.. +
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------G 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------c
Confidence 46777888888777 5799988 99999999999999999999999999999999999987753 2
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCCCCC------
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNALNLS------ 244 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~~~~------ 244 (384)
..++||+||++||.|..+.+..++. ++.+.+++||.+...+...+ ++||+||||++| .++++.+.+.++
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 3489999999999999999998865 56788899998887776554 599999999999 999988766655
Q ss_pred -CccEEEEeCccccc
Q 016712 245 -EVQFVVLDEADQML 258 (384)
Q Consensus 245 -~l~~vViDEah~~~ 258 (384)
.+.++||||||.|+
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 46899999999986
No 80
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.83 E-value=1.1e-19 Score=179.98 Aligned_cols=146 Identities=22% Similarity=0.216 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++++|++++..+.+ ++..++++|||+|||.+++..+-.. +..+|||+|+++|+.|+.+.+.+.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 599999999999998 8999999999999999875554432 233999999999999999888877
Q ss_pred CCCC-ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC
Q 016712 197 APSL-DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (384)
Q Consensus 197 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~ 275 (384)
+..- .+..+.|+. .... . ..|.|+|...+...........+..++||+||||++....+.. +...+..
T Consensus 104 ~~~~~~~g~~~~~~-~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~~~~~ 172 (442)
T COG1061 104 LLLNDEIGIYGGGE-KELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILELLSA 172 (442)
T ss_pred cCCccccceecCce-eccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----HHHhhhc
Confidence 6422 233333332 2211 0 3699999988866421122334479999999999987764433 3333322
Q ss_pred CCcEEEEEccCChh
Q 016712 276 NRQSMMFSATMPPW 289 (384)
Q Consensus 276 ~~q~l~~SAT~~~~ 289 (384)
...++++|||++..
T Consensus 173 ~~~~LGLTATp~R~ 186 (442)
T COG1061 173 AYPRLGLTATPERE 186 (442)
T ss_pred ccceeeeccCceee
Confidence 22299999998744
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=4.4e-19 Score=179.56 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=105.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|||+|..+++.++.|+ |..+.||+|||++|.+|++.... .|++++|++||++||.|.++.+..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---------~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---------AGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------cCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 377 59999999999999998 99999999999999999998763 3789999999999999999999987
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCC-------------------------CCCCccE
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL-------------------------NLSEVQF 248 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~-------------------------~~~~l~~ 248 (384)
+. ++.+.+++|+.+. +.+....++||+|||...| .+++..+.. ....+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 64 6778889998754 3445567899999999987 445543311 1356889
Q ss_pred EEEeCccccc
Q 016712 249 VVLDEADQML 258 (384)
Q Consensus 249 vViDEah~~~ 258 (384)
.||||+|.++
T Consensus 246 aIvDEvDSiL 255 (656)
T PRK12898 246 AIVDEADSVL 255 (656)
T ss_pred eEeeccccee
Confidence 9999999874
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.6e-18 Score=173.94 Aligned_cols=137 Identities=22% Similarity=0.211 Sum_probs=101.2
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH-
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL- 218 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 218 (384)
++.|+||||||++|+..+...+. .+.++||++|+++|+.|+++.|++.+ +..+.+++++.+..+....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHH
Confidence 47899999999999766555542 37789999999999999999999877 45677888887765544333
Q ss_pred --h-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-----h-HHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 219 --D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----F-AEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 219 --~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~-~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
. ..++|+|||+..+. ..++++++|||||+|...-++ | ..++...... ..+.++|++|||++.+
T Consensus 71 ~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsle 142 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHH
Confidence 2 34799999987663 357899999999999876332 1 1223333333 3589999999998766
Q ss_pred HHHHH
Q 016712 290 IRSLT 294 (384)
Q Consensus 290 ~~~~~ 294 (384)
....+
T Consensus 143 s~~~~ 147 (505)
T TIGR00595 143 SYHNA 147 (505)
T ss_pred HHHHH
Confidence 55544
No 83
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.81 E-value=4.4e-19 Score=178.64 Aligned_cols=165 Identities=20% Similarity=0.210 Sum_probs=133.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
..+++||.+.+..++ |+|+||++|||+|||+++...++.++.. .++.++++++|++.|+.|+...+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc
Confidence 369999999999999 9999999999999999999999988843 45688999999999999999888888766
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCC-CCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCCC
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALN-LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNR 277 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~-~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~ 277 (384)
..+....|+.........+-...+|+|+||..+...+...... ++++.++||||||+-.... |...+...+..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 6777777775544444455556899999999999988776544 5899999999999988665 4444546666555556
Q ss_pred cEEEEEccCChhHHH
Q 016712 278 QSMMFSATMPPWIRS 292 (384)
Q Consensus 278 q~l~~SAT~~~~~~~ 292 (384)
|+|++|||+......
T Consensus 213 qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQ 227 (746)
T ss_pred cEEEEecCCCccHHH
Confidence 999999999765443
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.81 E-value=7.1e-18 Score=177.02 Aligned_cols=253 Identities=17% Similarity=0.103 Sum_probs=154.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH----
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE---- 195 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~---- 195 (384)
..|+|+|..+......+..+++.+|||+|||++++..+...+.. +...+++|..||+++++|+++++.+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 47999999886544445679999999999999987766543321 2346799999999999999999875
Q ss_pred hCCCCceEEEECCCChHHHH--------------------HHHh----c---CCCEEEECchhHHHHHHcc-CCCCCCc-
Q 016712 196 SAPSLDTICVYGGTPISHQM--------------------RALD----Y---GVDAVVGTPGRVIDLIKRN-ALNLSEV- 246 (384)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~--------------------~~~~----~---~~~IlV~Tp~~l~~~l~~~-~~~~~~l- 246 (384)
.+....+.+.+|........ ..+. + -.+|+|||.+.++...... ...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 44444566677664322110 0111 1 1699999999887554332 1222223
Q ss_pred ---cEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHH-HHhcCC-Ce-------EEEecCC---C
Q 016712 247 ---QFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLT-NKYLKN-PL-------TVDLVGD---S 310 (384)
Q Consensus 247 ---~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~-~~~l~~-~~-------~i~~~~~---~ 310 (384)
++|||||+|.+ +......+..+++.+. ....+|+||||+|...++.+ ..|-.. +. .+..... .
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 48999999976 3334555666666553 36789999999998876543 333111 00 0100000 0
Q ss_pred cc---------cccCCeEEEEEEec---cchhhHH------------HHHHHHhHhHHHHHHHHHhhc---ceEEEecCC
Q 016712 311 DQ---------KLADGISLYSIATS---MNMQKVE------------NALFSLKQNVMQTAWLMLWLK---VIIVSLCMG 363 (384)
Q Consensus 311 ~~---------~~~~~i~~~~~~~~---~~~~k~~------------~l~~~~~~~~~~~~~~l~~~~---~~v~~~hg~ 363 (384)
.. .....+........ ..+.-.+ .+++|.++.++++++.|...+ ..+..+||+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 00000111101000 0011111 123455677888888887654 689999999
Q ss_pred CChhhh----hchhhhh-hcCC
Q 016712 364 ISHKAR----GRGPFQL-SEMD 380 (384)
Q Consensus 364 m~~~eR----~~il~~F-~~~~ 380 (384)
|+..+| +++++.| ++|+
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~ 618 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGK 618 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCC
Confidence 999999 5678888 6665
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.6e-18 Score=177.34 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCcHHHHHHHHHHhC-C--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQ-G--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~-g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++|||.+++..+.. | +..++++|||+|||++.+..+ ..+ +..+|||||+..|+.||.+.|.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999999874 3 378999999999999876443 333 3459999999999999999999975
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--------cCCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--------NALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--------~~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
. ...+..++|+.... .....+|+|+|+..+.....+ ..+.-..+++||+||||++... ...
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHH
Confidence 2 33445555543221 112368999999877533211 1122346899999999998543 344
Q ss_pred HHHHHCCCCCcEEEEEccCChh
Q 016712 268 VILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.++..+. ....+++||||...
T Consensus 394 ~il~~l~-a~~RLGLTATP~Re 414 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVRE 414 (732)
T ss_pred HHHHhcC-cCcEEEEeecCccc
Confidence 5566554 34589999998643
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.80 E-value=5.8e-18 Score=172.46 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=107.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|..+...+..|+ |..++||+|||++|.+|++...+. |.++.|++||.+||.|.++.+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 377 59999999998888776 999999999999999999644432 567999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCcccccC
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~~ 259 (384)
+. ++.+.+++|+.+..+.... ..+||+||||++| .+++..+ ...+++++++||||+|.++-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 76 5677888888776544333 3589999999999 8888766 34678999999999999863
No 87
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=6.9e-18 Score=174.35 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=106.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|+++|..+...+.+|+ |+.+.||+|||++|.+|++.... .|++++|++||++||.|.++.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 387 59999999999988876 99999999999999999986653 3788999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.|+.+...+.+ ...++||+||||+++ .+++..+. ..++.+.++||||+|.|+
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 75 577888888887433333 345699999999999 55554432 246789999999999885
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.80 E-value=6.7e-18 Score=172.99 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=95.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .|++.|......+..| .++.++||+|||++|.+|++...+ .++.++|++|+++||.|..+.+..++
T Consensus 68 gl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 68 GM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred CC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHHH
Confidence 55 4555555555554444 799999999999999999876653 35679999999999999999998876
Q ss_pred C--CCceEEEECCC---ChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGT---PISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~---~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~ 258 (384)
. ++.+.+.+++. ......+....++||++|||++| .+++..+ ...++.+.++||||||.|+
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 4 45666665542 12333344456799999999999 5555332 3447789999999999985
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=2.2e-18 Score=178.15 Aligned_cols=177 Identities=23% Similarity=0.306 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccC--CCCCCEEEEEecC
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPT 182 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~~lvl~Pt 182 (384)
+|.+-+.++. |...+.++|....+..+.+ .++++|||||+|||..+++-+++.+..+..... .....+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 3444444443 5667999999999998876 589999999999999999999999866433211 1234589999999
Q ss_pred HHHHHHHHHHHHHhCCCCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC---CCCCccEEEEeCcccc
Q 016712 183 RELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL---NLSEVQFVVLDEADQM 257 (384)
Q Consensus 183 ~~La~q~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~---~~~~l~~vViDEah~~ 257 (384)
++|++.+...|.+....++ |...+|+.....+ . ..+.+|+||||++. +.+.++.- ..+-++++||||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~--q-ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE--Q-IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhh--h-hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 9999999999998776554 5556666443221 1 12479999999998 55554432 2345789999999965
Q ss_pred cCCChHHHHHHHHHHC-------CCCCcEEEEEccCChh
Q 016712 258 LSVGFAEDVEVILERL-------PQNRQSMMFSATMPPW 289 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l-------~~~~q~l~~SAT~~~~ 289 (384)
-|. .|+.++.|..+. ...+..+++|||+|+.
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy 487 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY 487 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch
Confidence 454 788887776654 2378999999999986
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.3e-18 Score=181.50 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=141.2
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
..+| .+.++|++++..+.+|.++++++|||+|||++.-.++...+. ++.+++|.+|.++|.+|.++.|..
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~---------~~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR---------DGQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH---------cCCceEeccchhhhhhhHHHHHHH
Confidence 4577 599999999999999999999999999999999888887774 366699999999999999999999
Q ss_pred hCCCC--ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 196 SAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 196 ~~~~~--~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
.+.++ .+.+.+|+.+.+ .++.++|.|.+.|..++.++...+.++..||+||+|.|.+...+..+++++-.+
T Consensus 185 ~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 185 KFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 88533 245677765544 348999999999999999988889999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCChhHHHHHHH
Q 016712 274 PQNRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 274 ~~~~q~l~~SAT~~~~~~~~~~~ 296 (384)
|.++|+++||||+|+. .++..+
T Consensus 258 P~~v~~v~LSATv~N~-~EF~~W 279 (1041)
T COG4581 258 PDHVRFVFLSATVPNA-EEFAEW 279 (1041)
T ss_pred CCCCcEEEEeCCCCCH-HHHHHH
Confidence 9999999999999876 334333
No 91
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.77 E-value=4e-17 Score=175.05 Aligned_cols=231 Identities=18% Similarity=0.251 Sum_probs=143.3
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec----CHHHHHHHHHHHHH-hCCC
Q 016712 125 IQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP----TRELAKQVEKEFHE-SAPS 199 (384)
Q Consensus 125 ~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P----t~~La~q~~~~~~~-~~~~ 199 (384)
+-.+.+..+..+..++++|+||||||. .+|.+..-.. .+....+++.-| +++||.++.+++.. ++..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 334555566666778889999999999 5785433211 111223444456 56888888887775 3322
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc-cccCCChHHH-HHHHHHHCCCCC
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNR 277 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah-~~~~~~~~~~-~~~il~~l~~~~ 277 (384)
++..+-+. . ....+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... +..++.. .++.
T Consensus 150 VGY~vrf~-----~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdl 219 (1294)
T PRK11131 150 VGYKVRFN-----D---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDL 219 (1294)
T ss_pred eceeecCc-----c---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCc
Confidence 22111111 1 113458999999999999987654 48999999999999 6888877643 3333332 2578
Q ss_pred cEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc-----hhhHHHHHH---------------
Q 016712 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN-----MQKVENALF--------------- 337 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~--------------- 337 (384)
|+|+||||++. ..+...|...| .|.+.+.. . .+..++...... ......++.
T Consensus 220 KvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-~----pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 220 KVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-Y----PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred eEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-c----cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 99999999975 35555554445 46554321 1 234444433211 111111111
Q ss_pred --HHhHhHHHHHHHHHhhcce---EEEecCCCChhhhhchhhhhhcCCccc
Q 016712 338 --SLKQNVMQTAWLMLWLKVI---IVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 338 --~~~~~~~~~~~~l~~~~~~---v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
...++++.++..|...+.. +..+||+|+.++|+++++.+ |..+|
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g~rkI 340 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--SGRRI 340 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--CCeeE
Confidence 1226677788888776654 78999999999999999873 44444
No 92
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=3.5e-17 Score=135.57 Aligned_cols=143 Identities=42% Similarity=0.586 Sum_probs=111.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQM 215 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 215 (384)
+++++.++||+|||..++..+...... ....+++|++|+..++.|+.+.+..... ...+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 468999999999999988877776533 2457899999999999999999988775 46666677766655555
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
.....+.+|+++|++.+...+..........+++||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55566799999999999888877665667899999999999877654443222344456788999999996
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=6.5e-17 Score=167.13 Aligned_cols=127 Identities=27% Similarity=0.362 Sum_probs=103.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .+++.|...--.+..|+ |..++||+|||++|.+|++..+.. |..++|++||++||.|.++.+..++
T Consensus 80 g~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 80 GL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 66 48888877665565554 899999999999999999977643 5569999999999999999999987
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc-CCCC-----CCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~-~~~~-----~~l~~vViDEah~~~ 258 (384)
. ++.+.+++|+.+.......+ .+||+||||++| .+++..+ .+.+ +.+.++||||+|.|+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 6 56788888987766554433 589999999999 8988876 3334 589999999999886
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=1.1e-17 Score=169.30 Aligned_cols=160 Identities=21% Similarity=0.256 Sum_probs=139.4
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+| ++.++|++||-++.+|.++++.|+|.+|||+++-.++.-.. ..+.+++|-+|-++|-+|-++.|++.+
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHHhc
Confidence 45 69999999999999999999999999999999877765443 246789999999999999999999988
Q ss_pred CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCC
Q 016712 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~ 277 (384)
.+.+ +++|+.....+ +.++|.|.+.|.+++.++.--.+++.+||+||+|.+.|...+..+++++=.+|+++
T Consensus 365 ~Dvg--LlTGDvqinPe-------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 365 GDVG--LLTGDVQINPE-------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred cccc--eeecceeeCCC-------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 7555 78887655443 79999999999999988877789999999999999999999999999999999999
Q ss_pred cEEEEEccCChhHHHHHHHh
Q 016712 278 QSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~ 297 (384)
++|++|||.|+. .+++.+.
T Consensus 436 ~~IlLSATVPN~-~EFA~WI 454 (1248)
T KOG0947|consen 436 NFILLSATVPNT-LEFADWI 454 (1248)
T ss_pred eEEEEeccCCCh-HHHHHHh
Confidence 999999999976 4455544
No 95
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=2.4e-16 Score=137.52 Aligned_cols=150 Identities=24% Similarity=0.228 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQ-------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~-------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+++++|.+++..+.. .++.++.+|||+|||.+++..+.... . +++|++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C-EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c-ceeEecCHHHHHHHHHHHH
Confidence 589999999998873 58999999999999999875555443 1 7999999999999999999
Q ss_pred HHhCCCCceEEE-------------ECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC-----------CCCCCccEE
Q 016712 194 HESAPSLDTICV-------------YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA-----------LNLSEVQFV 249 (384)
Q Consensus 194 ~~~~~~~~~~~~-------------~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~-----------~~~~~l~~v 249 (384)
..+......... .................++++.|...+........ ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 776643322211 11111122222334468999999999987765321 223467899
Q ss_pred EEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 250 VLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 250 ViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
|+||||++.... ....++. .+...+|+|||||.
T Consensus 151 I~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 999999965432 1455555 55778999999986
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=2.7e-16 Score=155.85 Aligned_cols=169 Identities=22% Similarity=0.253 Sum_probs=144.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
.++.|+|..+|-.+-++.++++.|.|.+|||.++-.++...+.+ .-+|+|-+|-++|-+|-|+++..-+.+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 36899999999999999999999999999999999998888744 567999999999999999999987754
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcE
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~ 279 (384)
++..+|+.+.+. .+..+|.|.+.|..++.++.--++.+..||+||+|.|-|...+..+++-+-.+|++..+
T Consensus 199 --VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 199 --VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred --cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 456777765443 37899999999999998888788999999999999999998999999988899999999
Q ss_pred EEEEccCChhHHHHHHHh---cCCCeEEEec
Q 016712 280 MMFSATMPPWIRSLTNKY---LKNPLTVDLV 307 (384)
Q Consensus 280 l~~SAT~~~~~~~~~~~~---l~~~~~i~~~ 307 (384)
+++|||+|+. .+++++. -..|..|.+.
T Consensus 270 VFLSATiPNA-~qFAeWI~~ihkQPcHVVYT 299 (1041)
T KOG0948|consen 270 VFLSATIPNA-RQFAEWICHIHKQPCHVVYT 299 (1041)
T ss_pred EEEeccCCCH-HHHHHHHHHHhcCCceEEee
Confidence 9999999987 4444443 3467766553
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2.9e-15 Score=154.75 Aligned_cols=128 Identities=22% Similarity=0.295 Sum_probs=104.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|.-.-=.+..|+ |..+.||+|||+++.+|++-..+ .|..+-|++||..||.|.++.+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 477 59999988876666664 99999999999999999963332 2556889999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCC------CCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL------NLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~------~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.|+.+..+....+ .+||++|||+.| .+++..+.. ..+.+.++||||+|.|+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 86 56778888888777665554 489999999999 888876642 36789999999999885
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.68 E-value=2.1e-15 Score=162.51 Aligned_cols=229 Identities=20% Similarity=0.244 Sum_probs=143.9
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE
Q 016712 127 KAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY 206 (384)
Q Consensus 127 ~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~ 206 (384)
.+.+..+..+..+|++|+||||||. .+|.+..-. +.+...++++.-|.+.-|..+..++.+.. +..+....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~------~~~~~~~I~~tQPRRlAA~svA~RvA~el-g~~lG~~V 143 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL------GRGSHGLIGHTQPRRLAARTVAQRIAEEL-GTPLGEKV 143 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc------CCCCCceEecCCccHHHHHHHHHHHHHHh-CCCcceEE
Confidence 3455556666788999999999999 467553321 11223456777898888888887766644 23333333
Q ss_pred CCC-ChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc-cccCCChHHH-HHHHHHHCCCCCcEEEEE
Q 016712 207 GGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD-QMLSVGFAED-VEVILERLPQNRQSMMFS 283 (384)
Q Consensus 207 g~~-~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah-~~~~~~~~~~-~~~il~~l~~~~q~l~~S 283 (384)
|.. ..... ...+..|.|+|+|.|+..+.... .+.++++|||||+| ++++.+|.-. ++.++.. .++.++|+||
T Consensus 144 GY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 144 GYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred eeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 321 11111 12357899999999999887654 48999999999999 6888877654 5555544 3578999999
Q ss_pred ccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc-----hhhHHHHHH-----------------HHhH
Q 016712 284 ATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN-----MQKVENALF-----------------SLKQ 341 (384)
Q Consensus 284 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~-----------------~~~~ 341 (384)
||++. ..+...|...| .|.+.+. ..+ +..+|...... ..+.+.++. ....
T Consensus 219 ATld~--~~fa~~F~~ap-vI~V~Gr-~~P----Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAP-IIEVSGR-TYP----VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred CCcCH--HHHHHHhcCCC-EEEECCC-ccc----ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 99974 45555554444 4555432 112 22333222110 011111111 1226
Q ss_pred hHHHHHHHHHhh---cceEEEecCCCChhhhhchhhhhh
Q 016712 342 NVMQTAWLMLWL---KVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 342 ~~~~~~~~l~~~---~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
+++.++..|... +..+..+||+|+.++|+++++.+.
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~ 329 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS 329 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC
Confidence 666777777765 356899999999999999977663
No 99
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.67 E-value=5.6e-15 Score=151.46 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=165.5
Q ss_pred HHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.+.+.+.+. |+ .|+..|+.....+..|++.-+.||||.|||.--++..+... ..|.++++|+||+.|+.
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHH
Confidence 345556665 66 79999999999999999999999999999984433333222 34789999999999999
Q ss_pred HHHHHHHHhCCC---CceEE-EECCCChHH---HHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 188 QVEKEFHESAPS---LDTIC-VYGGTPISH---QMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 188 q~~~~~~~~~~~---~~~~~-~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
|+++.++++... ..+.+ .++..+.++ ..+.+.+ +.||+|+|..-|...+.. +.-.++++|++|++|.++.
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 999999998742 33333 445444433 2334444 489999997666555432 1114689999999998875
Q ss_pred CC-----------hHHH-------HHHHHHHC------------------------CCCCcEEEEEccCChhH-H-HHHH
Q 016712 260 VG-----------FAED-------VEVILERL------------------------PQNRQSMMFSATMPPWI-R-SLTN 295 (384)
Q Consensus 260 ~~-----------~~~~-------~~~il~~l------------------------~~~~q~l~~SAT~~~~~-~-~~~~ 295 (384)
.+ |..+ +..+...+ .+..+++..|||..++- + .+.+
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 32 2221 11111111 13468999999986542 2 2333
Q ss_pred HhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHH-------------hHhHHHHHHHHHhhcceEEEecC
Q 016712 296 KYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL-------------KQNVMQTAWLMLWLKVIIVSLCM 362 (384)
Q Consensus 296 ~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~-------------~~~~~~~~~~l~~~~~~v~~~hg 362 (384)
..++-- + ......+.++...++.. ...++...++..+ .+.++.++..+..+|+.+..+|+
T Consensus 298 eLlgFe----v--G~~~~~LRNIvD~y~~~-~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 298 ELLGFE----V--GSGGEGLRNIVDIYVES-ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred HHhCCc----c--CccchhhhheeeeeccC-ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 332211 1 11223445555444444 3344444443322 38888999999999999999998
Q ss_pred CCChhhhhchhhhhhcCCcccC
Q 016712 363 GISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 363 ~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+ .++.+++|..||+||+
T Consensus 371 ~-----~~~~le~F~~GeidvL 387 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVL 387 (1187)
T ss_pred c-----chhhhhhhccCceeEE
Confidence 3 3789999999999985
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.66 E-value=6.6e-15 Score=134.80 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=155.1
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++++.|+.+-+. +.+.++.++.|-||+|||+. +++.++..++ .|.++.+.+|....|.+++.++++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 689999887554 44668999999999999995 4666666654 4888999999999999999999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+++..+.+++|+...... .+++|+|...|+..- +.++++||||+|...-..-..-...+-+.....
T Consensus 168 F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 168 FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 999999999998765443 689999987776643 357899999999865221111122233334557
Q ss_pred CcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH-----HH----------------
Q 016712 277 RQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE-----NA---------------- 335 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l---------------- 335 (384)
.-+|.+|||+++..+.-+...-.. .+.++ ..-+...- ....+++..+...+.. ..
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~--~~klp-~RfH~~pL-pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLR--ILKLP-ARFHGKPL-PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCee--Eeecc-hhhcCCCC-CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 789999999998766554443222 22221 11111010 1111222222222211 01
Q ss_pred -HHHHhHhHHHHHHHHHh-h-cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 -LFSLKQNVMQTAWLMLW-L-KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 -~~~~~~~~~~~~~~l~~-~-~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...++..++++..|.. . ...++..|+. ...|.+..++|++|+++++
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lL 359 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLL 359 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEE
Confidence 12223555666666632 2 4566788874 5678999999999999874
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=153.31 Aligned_cols=172 Identities=20% Similarity=0.217 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH--HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVL--EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i--~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
++....-.....|..+++.||.+|+ +.++.++|.|...||+.|||+++-+-++..++.. +..++.+.|..
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp~v 279 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILPYV 279 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEeccee
Confidence 3333444444569999999999997 5578899999999999999999999999888763 45599999999
Q ss_pred HHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--cCCCCCCccEEEEeCcccccC
Q 016712 184 ELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 184 ~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~l~~vViDEah~~~~ 259 (384)
..++.....+..+.. ++.+.+++|..+.... .+.-++.|+|.++-..++.. ..-.+..+++|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 999988888887764 4556666655443322 22358999999987666543 122466799999999999999
Q ss_pred CChHHHHHHHHHHC-----CCCCcEEEEEccCChh
Q 016712 260 VGFAEDVEVILERL-----PQNRQSMMFSATMPPW 289 (384)
Q Consensus 260 ~~~~~~~~~il~~l-----~~~~q~l~~SAT~~~~ 289 (384)
.+.+..++.++.++ ....|+|+||||+|+.
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 99999998888764 3457899999999874
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.2e-13 Score=141.56 Aligned_cols=157 Identities=22% Similarity=0.239 Sum_probs=119.9
Q ss_pred CCCcHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
..+++-|..+++.+... ...++.|.||||||.+|+-.+-..+. .|+++|+|+|-..|-.|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHH
Confidence 35788999999998765 57899999999999999666666552 488999999999999999999999
Q ss_pred hCCCCceEEEECCCChHHHHHHHh----cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc---CCC---hHHH
Q 016712 196 SAPSLDTICVYGGTPISHQMRALD----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML---SVG---FAED 265 (384)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~---~~~---~~~~ 265 (384)
++. .++.+++++.+..+....+. ....|||||-..+ ...|+++++|||||.|--. +.+ ...+
T Consensus 268 rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 995 88889999887766555553 3589999995443 4568999999999999643 111 2233
Q ss_pred HHHHHHHCCCCCcEEEEEccCChhHHHHH
Q 016712 266 VEVILERLPQNRQSMMFSATMPPWIRSLT 294 (384)
Q Consensus 266 ~~~il~~l~~~~q~l~~SAT~~~~~~~~~ 294 (384)
+...... ..++++|+-|||+.=+....+
T Consensus 340 vA~~Ra~-~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 340 VAVLRAK-KENAPVVLGSATPSLESYANA 367 (730)
T ss_pred HHHHHHH-HhCCCEEEecCCCCHHHHHhh
Confidence 3333333 358999999999775544444
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.57 E-value=1.4e-14 Score=151.94 Aligned_cols=250 Identities=17% Similarity=0.130 Sum_probs=159.9
Q ss_pred CcHHHHHHHHHHhCC---C-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 122 LFPIQKAVLEPAMQG---R-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g---~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++.|..++..+... . .+++.+|||+|||++.+.+++..+... .....+++++.|++.++++++++++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 489999999887754 4 788999999999999999988877542 1247789999999999999999999876
Q ss_pred CCCceEEE--ECCCChHHHHHH-----H---------hcCCCEEEECchhHHHHHHccCCCCC-----CccEEEEeCccc
Q 016712 198 PSLDTICV--YGGTPISHQMRA-----L---------DYGVDAVVGTPGRVIDLIKRNALNLS-----EVQFVVLDEADQ 256 (384)
Q Consensus 198 ~~~~~~~~--~g~~~~~~~~~~-----~---------~~~~~IlV~Tp~~l~~~l~~~~~~~~-----~l~~vViDEah~ 256 (384)
....+... ++.....-.... . .....+.++||..+..... ....+. -.+.+|+||+|.
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSV-KGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhc-cccchHHHHHHHhhchhhccHHh
Confidence 53333333 332221111000 0 0013445555544433111 111111 136899999998
Q ss_pred ccCCChHHHHHHHHHHC-CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC----CCcccccCC-----eEE------
Q 016712 257 MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG----DSDQKLADG-----ISL------ 320 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~----~~~~~~~~~-----i~~------ 320 (384)
+.+......+..++..+ ..+..+|+||||+|+...+.+...+.....+.... ..++..... +..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 87763333334444433 24789999999999999988888776554443210 011110000 000
Q ss_pred -EEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhh
Q 016712 321 -YSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 321 -~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
..+.....+.+...+++|.++.+.+++..+...+..+.++||.|+..+|++.++.++
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~ 487 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELK 487 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHH
Confidence 001111123344455778889999999999988889999999999999999999655
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1e-13 Score=143.26 Aligned_cols=127 Identities=21% Similarity=0.268 Sum_probs=100.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .|++.|.-.--.+..| .|..++||.|||++|.+|++...+. |..|.||+|+..||.|..+.+..++
T Consensus 80 gm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 80 EM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 66 4888887665455554 4899999999999999999877643 5559999999999999999998876
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc-CCCC-----CCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN-ALNL-----SEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~-~~~~-----~~l~~vViDEah~~~ 258 (384)
. ++.+.++.++.+..+ +.-..++||++|||+.| .+++..+ .... ..+.++||||+|.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 5 677788888766532 33334789999999999 8888776 3333 678999999999886
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.54 E-value=1.4e-13 Score=148.75 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=107.6
Q ss_pred CCcHHHHHHHHHHh----CC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.++++|.+||..+. .| ++.+++++||+|||.+++ .++..+... ....++|||+|+++|+.|..+.|+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 58999999998765 33 579999999999999753 344444331 2356899999999999999999998
Q ss_pred hCCCCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-----CCCCCCccEEEEeCcccccC------C--
Q 016712 196 SAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLS------V-- 260 (384)
Q Consensus 196 ~~~~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~l~~vViDEah~~~~------~-- 260 (384)
....-. ...+++....... ......+|+|+|..++...+... ...+.++++|||||||+... .
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 742111 1111111110111 11234799999999987765432 23567899999999999531 0
Q ss_pred -------ChHHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 261 -------GFAEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 261 -------~~~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
.+...+..++..+ +.-.|+|||||...+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t 598 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHT 598 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccch
Confidence 1245667777755 357899999986543
No 106
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.53 E-value=1.2e-12 Score=138.74 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.|.|||..+...+... ..+|+.-.+|.|||.-+.+.+-..+.. +...++|||||. .|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 4899999998777644 478999999999999886555444322 334579999998 89999999998766
Q ss_pred CCceEEEECCCChHHHH--HHHhcCCCEEEECchhHHHHHH-ccCCCCCCccEEEEeCcccccCCC--hHHHHHHHHHHC
Q 016712 199 SLDTICVYGGTPISHQM--RALDYGVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERL 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~--~~~~~~~~IlV~Tp~~l~~~l~-~~~~~~~~l~~vViDEah~~~~~~--~~~~~~~il~~l 273 (384)
++...++.++....... .......+++|+|.+.+...-. ...+.-.++++|||||||++-... -... ...+..+
T Consensus 223 ~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~-y~~v~~L 301 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE-YQVVEQL 301 (956)
T ss_pred CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH-HHHHHHH
Confidence 45555554432111000 0111136899999877654111 111223478999999999986211 1111 2233333
Q ss_pred C-CCCcEEEEEccCC
Q 016712 274 P-QNRQSMMFSATMP 287 (384)
Q Consensus 274 ~-~~~q~l~~SAT~~ 287 (384)
. ....++++||||.
T Consensus 302 a~~~~~~LLLTATP~ 316 (956)
T PRK04914 302 AEVIPGVLLLTATPE 316 (956)
T ss_pred hhccCCEEEEEcCcc
Confidence 2 3456899999984
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.47 E-value=7.3e-13 Score=137.70 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=101.4
Q ss_pred CcHHHHHHHHHHh----C------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----Q------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
++++|..|+..+. . .+..++..+||||||++.+..+...+ . ....+++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~------~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E------LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h------hcCCCeEEEEECcHHHHHHHHH
Confidence 7889999998753 2 24789999999999998765554433 2 1346789999999999999999
Q ss_pred HHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHcc--CCCCCCc-cEEEEeCcccccCCChHHHHH
Q 016712 192 EFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN--ALNLSEV-QFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 192 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~--~~~~~~l-~~vViDEah~~~~~~~~~~~~ 267 (384)
.|..+..+.. .+..+.......+.. ..+|+|+|..++...+... ......- -+||+||||+.... .+.
T Consensus 312 ~f~~~~~~~~----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~ 383 (667)
T TIGR00348 312 EFQSLQKDCA----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELA 383 (667)
T ss_pred HHHhhCCCCC----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHH
Confidence 9999874211 111222333333333 3689999999997644321 1111111 28999999986433 233
Q ss_pred HHHHHCCCCCcEEEEEccCCh
Q 016712 268 VILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~ 288 (384)
..++..-++..+++|||||-.
T Consensus 384 ~~l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 384 KNLKKALKNASFFGFTGTPIF 404 (667)
T ss_pred HHHHhhCCCCcEEEEeCCCcc
Confidence 344333346789999999854
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.3e-11 Score=128.64 Aligned_cols=233 Identities=19% Similarity=0.183 Sum_probs=150.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-CCc
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-SLD 201 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~ 201 (384)
+....+.+..+.+..-++|+|+||||||.- +|-+.. +. +...+..+.+.-|.|--|..+.+++.+... .++
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~ll--e~----g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLL--EE----GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHH--hh----hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 444555666677778899999999999983 553322 11 113456788888999888888888776542 222
Q ss_pred --eEE--EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCChH-HHHHHHHHHCCC
Q 016712 202 --TIC--VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFA-EDVEVILERLPQ 275 (384)
Q Consensus 202 --~~~--~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~~~-~~~~~il~~l~~ 275 (384)
|+. -+.+.. .....|-+.|.|.|+..+..... ++.+++|||||+|. -++..+. .-+..++...++
T Consensus 124 ~~VGY~iRfe~~~--------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 124 ETVGYSIRFESKV--------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred ceeeEEEEeeccC--------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 221 111111 12368999999999999876654 89999999999994 3333333 234455666777
Q ss_pred CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHH----------------
Q 016712 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSL---------------- 339 (384)
Q Consensus 276 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~---------------- 339 (384)
+..+|+||||+... ....++.+.-.+.+.+. ..-+..+|......+++.+..+...
T Consensus 195 DLKiIimSATld~~---rfs~~f~~apvi~i~GR-----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 195 DLKLIIMSATLDAE---RFSAYFGNAPVIEIEGR-----TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred CceEEEEecccCHH---HHHHHcCCCCEEEecCC-----ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEEC
Confidence 89999999999754 34556666555555432 1123333322222233222222111
Q ss_pred --hHhHHHHHHHHHh----hcceEEEecCCCChhhhhchhhhhhcCC
Q 016712 340 --KQNVMQTAWLMLW----LKVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 340 --~~~~~~~~~~l~~----~~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.+++.+.+..+.. ..+.+..+||.|+.+++.++++--..|.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 1666677777776 3588999999999999999998777763
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.42 E-value=4.2e-12 Score=135.86 Aligned_cols=75 Identities=27% Similarity=0.309 Sum_probs=63.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHH----HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 107 SQDIVAALARRGISKLFPIQKAVLE----PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~i~----~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
++.+.+.+...||+ ++|.|.+.++ .+.+|+++++.||||+|||++|++|++.... .+.+++|.+||
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t 301 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNT 301 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCc
Confidence 45677778788986 8999998666 5557889999999999999999999987652 25689999999
Q ss_pred HHHHHHHHH
Q 016712 183 RELAKQVEK 191 (384)
Q Consensus 183 ~~La~q~~~ 191 (384)
++|..|+..
T Consensus 302 ~~Lq~Ql~~ 310 (850)
T TIGR01407 302 KVLQSQLLE 310 (850)
T ss_pred HHHHHHHHH
Confidence 999999865
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.36 E-value=1.1e-10 Score=124.45 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+++||.+.+.-+. .|.+.|++-..|.|||+.. +.++..+... .+....+|||||. .+..+|.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999998764 5788999999999999965 3333333221 1223458999997 5678899999999
Q ss_pred CCCCceEEEECCCChHHHHH-H-H-hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 197 APSLDTICVYGGTPISHQMR-A-L-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~-~-~-~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
++.+.+..++|......... . + ....+|+|+|.+.+..... .+.--++++|||||+|++-.. .......+..+
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 99888888888654332221 1 1 2347999999988765332 222235789999999998653 33445556666
Q ss_pred CCCCcEEEEEccCC
Q 016712 274 PQNRQSMMFSATMP 287 (384)
Q Consensus 274 ~~~~q~l~~SAT~~ 287 (384)
.. ...+++|+||-
T Consensus 318 ~a-~~RLLLTGTPl 330 (1033)
T PLN03142 318 ST-NYRLLITGTPL 330 (1033)
T ss_pred hc-CcEEEEecCCC
Confidence 43 44688999984
No 111
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.35 E-value=1.1e-11 Score=126.61 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
.|..||.+.+..+-.+...+|++||.+|||.+-. -+++.+... ....-+|+++||++|++|+.......+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 4899999999999999999999999999999653 344444431 4567799999999999999888777652
Q ss_pred CCceEE-EECCCChHHHHHHHhcCCCEEEECchhHHHHHHc---cCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 199 SLDTIC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 199 ~~~~~~-~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~---~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
.+.... +.|... ++.+.-.-.|+|+|+-|+++-.++.. ..-+.++++++|+||+|.+....-+--++.++...
T Consensus 584 t~~rg~sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 222111 222211 11111123589999999999998877 34567899999999999987654344445554444
Q ss_pred CCCcEEEEEccCChh
Q 016712 275 QNRQSMMFSATMPPW 289 (384)
Q Consensus 275 ~~~q~l~~SAT~~~~ 289 (384)
.|+++++|||+.+.
T Consensus 661 -~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 -PCPFLVLSATIGNP 674 (1330)
T ss_pred -CCCeeEEecccCCH
Confidence 68999999998654
No 112
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=1.6e-11 Score=100.75 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=82.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+|+-.++...+|+|||--.+--++..-.. .+.++|||.|||.++..+.+.++.. ++..-.. ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~-~~~~-- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTN-ARMR-- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEEST-TSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCce-eeec--
Confidence 45567889999999999765555544333 4788999999999999988888653 3222211 1111
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC--hHHHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG--FAEDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~--~~~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
....+.-|-|.|...+.+.+.+ .....++++||+||||...... +...+... .. ...+.+|.||||+|....
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSED 141 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---
T ss_pred --cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCC
Confidence 1123457888999998887766 6667899999999999643221 11222222 11 134679999999998753
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.34 E-value=3.2e-12 Score=129.56 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.++.+|..||..+. +|+ ..|+++.||+|||..+ +.++..+... +.-+++|+|+-++.|+.|.+..|..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------chhheeeEEechHHHHHHHHHHHHH
Confidence 58999999987654 453 5899999999999976 6677777652 4567899999999999999999999
Q ss_pred hCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-----CCCCCCccEEEEeCcccccCCChHHHHHHHH
Q 016712 196 SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (384)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~l~~vViDEah~~~~~~~~~~~~~il 270 (384)
+.|+-....+..+..... .++|.|+|..++...+... .+....+++|||||||+ |.......|+
T Consensus 238 ~~P~~~~~n~i~~~~~~~-------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~ 306 (875)
T COG4096 238 FLPFGTKMNKIEDKKGDT-------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSIL 306 (875)
T ss_pred hCCCccceeeeecccCCc-------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHH
Confidence 988655444333322211 3799999999998888654 33456699999999998 3555666777
Q ss_pred HHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 271 ERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 271 ~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
..+..- .+++||||...+..-.-.|+
T Consensus 307 dYFdA~--~~gLTATP~~~~d~~T~~~F 332 (875)
T COG4096 307 DYFDAA--TQGLTATPKETIDRSTYGFF 332 (875)
T ss_pred HHHHHH--HHhhccCccccccccccccc
Confidence 776433 33449998764443333333
No 114
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.33 E-value=2.2e-11 Score=124.14 Aligned_cols=61 Identities=28% Similarity=0.250 Sum_probs=50.6
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
...+.+++.+++.++||+|||++|++|++..+.. ..+.++||++||++|+.|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-------~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-------RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-------ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999999987642 236789999999999999998776554
No 115
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=9.5e-11 Score=121.17 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=99.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|.-.-=.+..|+ |....||+|||+++.+|++.... .|.+|-|++||.-||.|.++.+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHHH
Confidence 376 59999988876676666 99999999999999999988774 4888999999999999999999988
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHH-HHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+.... ..+||++||...|- ++++.+. .....+.+.||||+|.++
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 76 5677777776655544333 35799999998773 3443321 123568899999999875
No 116
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.27 E-value=9.6e-10 Score=109.35 Aligned_cols=229 Identities=16% Similarity=0.198 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh-C----
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-A---- 197 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~-~---- 197 (384)
+.+-.+.+..+.+.+-+|+.|+||||||. .+|= .+.+. +....+.+.+.-|.|--|..++++..+- +
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQ--yL~ea----G~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQ--YLAEA----GFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhH--HHHhc----ccccCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 34445667777788889999999999997 4552 23221 2223344888889998888887776553 2
Q ss_pred CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCC-hHHHHHHHHHHCCC
Q 016712 198 PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVG-FAEDVEVILERLPQ 275 (384)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~-~~~~~~~il~~l~~ 275 (384)
..++-.+-+.+.... ...|.+.|-|.|++-+..+. .+++.++|||||||. -+... ...-++.++++ ++
T Consensus 125 ~~VGY~IRFed~ts~--------~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~ 194 (674)
T KOG0922|consen 125 EEVGYTIRFEDSTSK--------DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RP 194 (674)
T ss_pred ceeeeEEEecccCCC--------ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CC
Confidence 222222223322222 25899999999988876554 378999999999994 11111 12223333332 34
Q ss_pred CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh----------------hHHHHHHHH
Q 016712 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ----------------KVENALFSL 339 (384)
Q Consensus 276 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~----------------k~~~l~~~~ 339 (384)
+..+|+||||+.- +....|+.+..++.++|. . -.+..++...+..+. ..+.+++..
T Consensus 195 ~LklIimSATlda---~kfS~yF~~a~i~~i~GR-~----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLt 266 (674)
T KOG0922|consen 195 DLKLIIMSATLDA---EKFSEYFNNAPILTIPGR-T----FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLT 266 (674)
T ss_pred CceEEEEeeeecH---HHHHHHhcCCceEeecCC-C----CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeC
Confidence 6789999999973 455667776555555432 1 112223322222111 111122221
Q ss_pred -hHhHHHHHHHHHhh----c----ceEEEecCCCChhhhhchhhhhh
Q 016712 340 -KQNVMQTAWLMLWL----K----VIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 340 -~~~~~~~~~~l~~~----~----~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
.++++..+..|... + ..+..+||.|+.+++.++++.--
T Consensus 267 GqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p 313 (674)
T KOG0922|consen 267 GQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAP 313 (674)
T ss_pred CHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCC
Confidence 25666666666554 1 14678999999999999876544
No 117
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.27 E-value=8.6e-11 Score=124.52 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=54.4
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH-H
Q 016712 117 RGISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-K 191 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~-~ 191 (384)
.|| ++++-|.+.... +.+++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHH
Confidence 366 599999985544 34567899999999999999999988643 3578999999999999994 4
Q ss_pred HHHH
Q 016712 192 EFHE 195 (384)
Q Consensus 192 ~~~~ 195 (384)
.+..
T Consensus 311 ~i~~ 314 (820)
T PRK07246 311 EVKA 314 (820)
T ss_pred HHHH
Confidence 4443
No 118
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.21 E-value=3.5e-10 Score=106.16 Aligned_cols=76 Identities=24% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCCcHHHHHHH----HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 118 g~~~~~~~Q~~~i----~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+...++|.|.+.+ ..+..|+++++.+|||+|||++|++|++..+...... ..+.+++|.++|..+..|....+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHH
Confidence 3346899999944 4556789999999999999999999998776542111 02347999999999999987777
Q ss_pred HHh
Q 016712 194 HES 196 (384)
Q Consensus 194 ~~~ 196 (384)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 654
No 119
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.21 E-value=3.5e-10 Score=106.16 Aligned_cols=76 Identities=24% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCCcHHHHHHH----HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVL----EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 118 g~~~~~~~Q~~~i----~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+...++|.|.+.+ ..+..|+++++.+|||+|||++|++|++..+...... ..+.+++|.++|..+..|....+
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHH
Confidence 3346899999944 4556789999999999999999999998776542111 02347999999999999987777
Q ss_pred HHh
Q 016712 194 HES 196 (384)
Q Consensus 194 ~~~ 196 (384)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 654
No 120
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.17 E-value=2.1e-10 Score=108.02 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=89.6
Q ss_pred HHHHHHHHHh-------------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 125 IQKAVLEPAM-------------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 125 ~Q~~~i~~i~-------------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
+|.+++.-+. ..+..+++-.+|.|||...+..+ ..+..... ......+|||+|. .+..||..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~---~~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALI-SYLKNEFP---QRGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHH-HHHHHCCT---TSS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhh-hhhhhccc---cccccceeEeecc-chhhhhhh
Confidence 5677766542 33578999999999999764443 33333110 0111249999999 88899999
Q ss_pred HHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc---cCCCCCCccEEEEeCcccccCCChHHHH
Q 016712 192 EFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR---NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (384)
Q Consensus 192 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~---~~~~~~~l~~vViDEah~~~~~~~~~~~ 266 (384)
++.++++ .+++..+.|...............+++|+|.+.+...... ..+.--++++||+||+|.+-+. ....
T Consensus 76 E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~ 153 (299)
T PF00176_consen 76 EIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKR 153 (299)
T ss_dssp HHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHH
T ss_pred hhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccc
Confidence 9999983 4665555555412222222233579999999988711000 0111134899999999998443 2233
Q ss_pred HHHHHHCCCCCcEEEEEccCCh
Q 016712 267 EVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 267 ~~il~~l~~~~q~l~~SAT~~~ 288 (384)
...+..+. ....+++||||-.
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccc-cceEEeecccccc
Confidence 33444455 6678889999743
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.8e-10 Score=119.56 Aligned_cols=128 Identities=24% Similarity=0.267 Sum_probs=98.1
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .+++.|...--.+..| .|..+.||.|||+++.+|++...+ .|.+|.|++|+.-||.|.++.+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 375 5888998765555555 488999999999999999987664 4888999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccCC------CCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNAL------NLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~~------~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.++.+..+....+ .+||++||..-+ .++|..+.. ..+.+.++||||+|.++
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 86 56677777766555444333 389999998876 334433311 23789999999999876
No 122
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.16 E-value=4.8e-11 Score=114.44 Aligned_cols=149 Identities=21% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQG---RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g---~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++|+|+.++..+... ++-||+.|.|+|||++-+-++. .+ .+.||||+.+-.-+.||...|..+.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4799999999998743 5789999999999997544332 22 5679999999999999999999876
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--------CCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--------ALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--------~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
. +-.+..++++... ....++.|+|+|..++..--++. .+.-..++++|+||+|.+...-|+..+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 3 2234445544321 23346899999998775433221 2234578999999999887765665554
Q ss_pred HHHHHCCCCCcEEEEEccCChhHH
Q 016712 268 VILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
.+-.. --+++|||+-.+-.
T Consensus 445 iv~aH-----cKLGLTATLvREDd 463 (776)
T KOG1123|consen 445 IVQAH-----CKLGLTATLVREDD 463 (776)
T ss_pred HHHHH-----hhccceeEEeeccc
Confidence 44332 26899999865533
No 123
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.15 E-value=7.2e-10 Score=119.47 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCCCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
|| +++|-|.+.+..+. +++.+++.||||+|||++|++|++.... ..+.+++|-++|+.|.+|+..
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~--------~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK--------KKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh--------ccCCeEEEEcCCHHHHHHHHH
Confidence 66 59999999665543 6688999999999999999999987653 246789999999999999865
No 124
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.11 E-value=1.1e-08 Score=106.94 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=115.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH-hCCCC
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSL 200 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~-~~~~~ 200 (384)
.+..+.+.++.+.+...++|+|.||+|||.= +| +.+++.....+ ....+++--|.|--|..++++... .+...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQ--vp--QfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQ--VP--QFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhh--hh--HHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 4677888889999989999999999999984 33 22333221111 456788888999888888877654 33322
Q ss_pred c--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCChHHHHHHHHHHCCCCC
Q 016712 201 D--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 201 ~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~~~~~~~~il~~l~~~~ 277 (384)
+ ++.-.+... .......+++||.|.|++.+.. ...+.++..||+||+|. =.+..|.-.+.+.+-..+++.
T Consensus 248 g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 248 GEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred CCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 2 111111110 1111268999999999999977 45688999999999994 334445555444444456899
Q ss_pred cEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 278 QSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 278 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
++|+||||+. .+....|+.....|.+.+
T Consensus 321 kvILMSAT~d---ae~fs~YF~~~pvi~i~g 348 (924)
T KOG0920|consen 321 KVILMSATLD---AELFSDYFGGCPVITIPG 348 (924)
T ss_pred eEEEeeeecc---hHHHHHHhCCCceEeecC
Confidence 9999999987 445666777666666543
No 125
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.10 E-value=9.3e-10 Score=113.54 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=100.3
Q ss_pred EccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh--
Q 016712 142 RARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD-- 219 (384)
Q Consensus 142 ~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 219 (384)
.+-+|||||.+|+-.+-..+. .|.++|||+|...|..|+.+.|++.+++..+.+++++.+..+..+.+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~---------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR---------AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH---------cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH
Confidence 334699999999776666653 378899999999999999999999996567888998888776555443
Q ss_pred -cC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc--CC-ChH---HHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 220 -YG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML--SV-GFA---EDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 220 -~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~--~~-~~~---~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
.| .+|+|||-..+ ...++++++|||||.|.-. +. +.+ .++... +.-..++.+|+-|||++-+..
T Consensus 237 ~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCCHHHH
Confidence 34 79999995443 4568899999999999543 11 111 223222 223358899999999886665
Q ss_pred HHHHH
Q 016712 292 SLTNK 296 (384)
Q Consensus 292 ~~~~~ 296 (384)
..+..
T Consensus 309 ~~~~~ 313 (665)
T PRK14873 309 ALVES 313 (665)
T ss_pred HHHhc
Confidence 55443
No 126
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.09 E-value=8.2e-10 Score=107.48 Aligned_cols=255 Identities=12% Similarity=-0.025 Sum_probs=165.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
+..+--+....+|.+++..+.+|++.++...|.+||.++|.+.....+.. ......+++.|+.++++...+.+
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhccCCce
Confidence 44455567889999999999999999999999999999999998877654 34456899999999998765443
Q ss_pred HHhCC---CCc--eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC----CCCCccEEEEeCcccccCCChHH
Q 016712 194 HESAP---SLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL----NLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 194 ~~~~~---~~~--~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~----~~~~l~~vViDEah~~~~~~~~~ 264 (384)
.-... ..+ ++-.+.+.+......-...+..++++.|..+......+.. .+-.+.++++||+|.+... |+.
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~ 430 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKA 430 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhh
Confidence 32211 111 2334555555555556667899999999988776654433 3345778999999987665 555
Q ss_pred HHHHHHHHC---------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc----hhh
Q 016712 265 DVEVILERL---------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN----MQK 331 (384)
Q Consensus 265 ~~~~il~~l---------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~----~~k 331 (384)
.....++++ ..+.|++-.|||+-.+++.+...+..+-+++... . ....+-++++++.+.. +.+
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~--D--GSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTI--D--GSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEe--c--CCCCccceEEEeCCCCCCcchhh
Confidence 544444443 3478999999999999998888776555544321 1 2234445555554422 111
Q ss_pred HHHH-------HHHHhHh---------HHHHHHH--------HHhhc----ceEEEecCCCChhhhhchhhhhhcCC
Q 016712 332 VENA-------LFSLKQN---------VMQTAWL--------MLWLK----VIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 332 ~~~l-------~~~~~~~---------~~~~~~~--------l~~~~----~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
.+.. +..+..+ .-++++. |...+ -.+..|.||...++|+++..+.--|+
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 1111 1111100 0022221 11111 13678899999999999998877665
No 127
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.00 E-value=4.2e-08 Score=97.37 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=134.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH-hCCC-
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPS- 199 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~-~~~~- 199 (384)
-+++-.+.+.++....-++|.|.||||||. .+|= .+.+..- ...|+++-+--|.|.-|..+..+..+ .+-.
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQ--yL~EaGy---tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQ--YLYEAGY---TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccH--HHHhccc---ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 455666777778777889999999999997 5663 3333211 12355588888999998888777655 2222
Q ss_pred ---CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCC-hHHHHHHHHHHCC
Q 016712 200 ---LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVG-FAEDVEVILERLP 274 (384)
Q Consensus 200 ---~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~-~~~~~~~il~~l~ 274 (384)
++-.+-+.+.... ..-|=+.|-|+|+.-+... .++...++|||||||. -+... ...-++.| .+++
T Consensus 339 G~eVGYsIRFEdcTSe--------kTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~R 408 (902)
T KOG0923|consen 339 GHEVGYSIRFEDCTSE--------KTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFR 408 (902)
T ss_pred ccccceEEEeccccCc--------ceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhC
Confidence 2222222222221 2467799999998776543 4588899999999994 22221 22223333 3446
Q ss_pred CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccc----------------cCCeEEEEEEeccchhhHHHHHHH
Q 016712 275 QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKL----------------ADGISLYSIATSMNMQKVENALFS 338 (384)
Q Consensus 275 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~----------------~~~i~~~~~~~~~~~~k~~~l~~~ 338 (384)
++..+++.|||+.-. -...|+.+.-+..+++. +.++ ...+.+....... .+.+++.
T Consensus 409 pdLKllIsSAT~DAe---kFS~fFDdapIF~iPGR-RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~----GDILVFl 480 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE---KFSAFFDDAPIFRIPGR-RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPL----GDILVFL 480 (902)
T ss_pred CcceEEeeccccCHH---HHHHhccCCcEEeccCc-ccceeeecccCCchhHHHHHHhhheeeEeccCC----ccEEEEe
Confidence 789999999998743 34556655444444322 1111 1111111111111 1222222
Q ss_pred Hh-HhHHHHHHHH----Hhh-----cceEEEecCCCChhhhhchhhhhhc
Q 016712 339 LK-QNVMQTAWLM----LWL-----KVIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 339 ~~-~~~~~~~~~l----~~~-----~~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
.. ++++...+.+ ..+ ++.+.++|+.|+.+.+.+|++--=+
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~ 530 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPP 530 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCC
Confidence 11 2222222222 222 5679999999999999988875444
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=3.1e-09 Score=108.21 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=99.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|.-..-.++.|+ |....||.|||+++.+|++...+ .|.+|.|++|+.-||.|.++.+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 377 59999999998888875 78999999999999999987764 3788999999999999999999988
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHH-HHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.++.++.+..+.... ..+||++||...+- ++++.+. .....+.+.||||+|.++
T Consensus 143 y~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 76 5667777776655443333 35899999998763 3333221 124568899999999875
No 129
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.94 E-value=1.7e-08 Score=98.15 Aligned_cols=72 Identities=28% Similarity=0.332 Sum_probs=57.5
Q ss_pred CCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.| .|...|-+||..+..| +.-.+.|-||||||+.. .-++..+ +.-+||++|.+-||-|.+.+
T Consensus 10 ~f-~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~-AnVI~~~-----------~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 10 PF-KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM-ANVIAKV-----------QRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CC-CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH-HHHHHHh-----------CCCeEEEecchhHHHHHHHH
Confidence 44 5899999999887765 57899999999999864 3344443 34499999999999999999
Q ss_pred HHHhCCCCce
Q 016712 193 FHESAPSLDT 202 (384)
Q Consensus 193 ~~~~~~~~~~ 202 (384)
|++++|+-.|
T Consensus 77 fk~fFP~NaV 86 (663)
T COG0556 77 FKEFFPENAV 86 (663)
T ss_pred HHHhCcCcce
Confidence 9999985443
No 130
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.88 E-value=3.8e-08 Score=103.08 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCCCCcHHHHHHHHHHh---CC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAM---QG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~---~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
|| +.++-|.+....+. .+ +.+++.|+||+|||++|++|++..... .+.+++|-+.|+.|-+|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--------~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--------EKKKLVISTATVALQEQ 93 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--------cCCeEEEEcCCHHHHHH
Confidence 66 59999999766544 33 578899999999999999999876543 46789999999999999
Q ss_pred HH
Q 016712 189 VE 190 (384)
Q Consensus 189 ~~ 190 (384)
+.
T Consensus 94 L~ 95 (697)
T PRK11747 94 LV 95 (697)
T ss_pred HH
Confidence 85
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=98.87 E-value=3.2e-09 Score=107.94 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=101.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC----cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~----d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 172 (384)
+...|+.+.. .+++.++.-....+|+|+|+.|++..++|- .-=+.+..|+|||+.. +-+.+++.
T Consensus 138 s~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala---------- 205 (1518)
T COG4889 138 SPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALA---------- 205 (1518)
T ss_pred CCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHh----------
Confidence 3455655432 466666666677899999999999998762 2234456799999976 44455542
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCC--------------------hHH---HHH--HHhcCCCEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTP--------------------ISH---QMR--ALDYGVDAVV 226 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~--------------------~~~---~~~--~~~~~~~IlV 226 (384)
..++|+|+|+..|..|..+.+..-.. .+....+.++.. ... ... ....+--||+
T Consensus 206 ~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 206 AARILFLVPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hhheEeecchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 36799999999999999988876431 233222222211 011 111 1123567999
Q ss_pred ECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 227 GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 227 ~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
+|...+...-.....-+..+++||.||||+-...
T Consensus 286 sTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa 319 (1518)
T COG4889 286 STYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGA 319 (1518)
T ss_pred EcccchHHHHHHHHcCCCCccEEEecchhccccc
Confidence 9999887766655666889999999999987543
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.86 E-value=3.8e-07 Score=93.99 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHhC---C-------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC-----CEEEEEecCHHH
Q 016712 121 KLFPIQKAVLEPAMQ---G-------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN-----PLCLVLAPTREL 185 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~---g-------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~-----~~~lvl~Pt~~L 185 (384)
.++|+|++.+.-+.+ | ..+|+.-..|+|||+-. ++.+..++.. .++ .++|||+|. .|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq------~P~~~~~~~k~lVV~P~-sL 309 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQ------FPQAKPLINKPLVVAPS-SL 309 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHh------CcCccccccccEEEccH-HH
Confidence 589999999875542 2 24677778999999965 5555555442 234 679999997 57
Q ss_pred HHHHHHHHHHhCC--CCceEEEECCCCh--HHHHHHHh-----cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 186 AKQVEKEFHESAP--SLDTICVYGGTPI--SHQMRALD-----YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~g~~~~--~~~~~~~~-----~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
+.-|+++|.++.. .+....++|.... ......+. ...-|++-+.+.+.+.+. .+....++++|+||.|+
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCC
Confidence 7889999999864 4566667777653 11111111 124677888887765554 34466899999999999
Q ss_pred ccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 257 MLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
+-+. ...+...+..+. ....|++|.|+
T Consensus 388 lkN~--~s~~~kaL~~l~-t~rRVLLSGTp 414 (776)
T KOG0390|consen 388 LKNS--DSLTLKALSSLK-TPRRVLLTGTP 414 (776)
T ss_pred ccch--hhHHHHHHHhcC-CCceEEeeCCc
Confidence 6543 223333444453 34467779997
No 133
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.85 E-value=6.5e-08 Score=88.87 Aligned_cols=128 Identities=22% Similarity=0.274 Sum_probs=91.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+ .|++.|..++=.+..|+ |+...||-|||++..+|+....+ .|..|=|++.+..||..=++.+..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 466 59999999987777666 99999999999999888876653 3778999999999999888787776
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHH-HHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~-~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+..... .+||++||...+.- +++.+. .....+.++||||+|.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 54 67777788776654433333 46899999998754 443321 124678999999999765
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.81 E-value=8.6e-08 Score=96.67 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=108.1
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+++||.+.++.+. .|-+.|+.-..|-|||+-. +..+-.+.... +..+--||++|.--|.+ |.++|+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-----~~~GPfLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-----GIPGPFLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-----CCCCCeEEEeeHhhHHH-HHHHHHHh
Confidence 58999999887654 5778999999999999843 34444332211 22233799999888755 99999999
Q ss_pred CCCCceEEEECCCChHHH-HHHH-h-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 197 APSLDTICVYGGTPISHQ-MRAL-D-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~-~~~~-~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
.|++++.+++|+...... .+.+ . ...+|+|+|.+..+.- ...+.--.++++||||+|++-+. ...+..+++.+
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 999999999998643322 1222 1 2579999999876543 12222336889999999998765 33455667776
Q ss_pred CCCCcEEEEEccCC
Q 016712 274 PQNRQSMMFSATMP 287 (384)
Q Consensus 274 ~~~~q~l~~SAT~~ 287 (384)
.. ...+++|.||-
T Consensus 316 ~~-~nrLLlTGTPL 328 (971)
T KOG0385|consen 316 KT-DNRLLLTGTPL 328 (971)
T ss_pred cc-cceeEeeCCcc
Confidence 54 34677788974
No 135
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.74 E-value=4.3e-08 Score=103.22 Aligned_cols=150 Identities=19% Similarity=0.304 Sum_probs=112.2
Q ss_pred CCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC-
Q 016712 121 KLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~- 198 (384)
...|+|.++++.+.+. .++++.+|+|||||.++-++++. .....+++++.|..+.+..+++.+.+.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~ 1212 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSK 1212 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhcc
Confidence 4589999999888755 57999999999999999888875 24567899999999999988888777553
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH------HHHHHH
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE------DVEVIL 270 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~------~~~~il 270 (384)
+..++.+.|..+..- .+....+|+|+||+++..+ . ....+++.|.||.|.+.+. ++. .+..|-
T Consensus 1213 ~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1213 LLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIA 1283 (1674)
T ss_pred ccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHH
Confidence 444444555443322 2333469999999998444 2 5678999999999987744 221 156667
Q ss_pred HHCCCCCcEEEEEccCChh
Q 016712 271 ERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 271 ~~l~~~~q~l~~SAT~~~~ 289 (384)
.++.++..++.+|..+.+.
T Consensus 1284 ~q~~k~ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANA 1302 (1674)
T ss_pred HHHHhheeEEEeehhhccc
Confidence 7777889999999887654
No 136
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.73 E-value=9.6e-07 Score=85.14 Aligned_cols=195 Identities=16% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|...+.++.-.+.|++.-----+..+.+.+..+...+-++++|.||||||. .+|-+..-.. . .....+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~--~----~~~~~v~ 95 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYE--L----SHLTGVA 95 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHH--H----hhcccee
Confidence 345777788888888888753223455666667777778889999999999997 3443221111 0 1124477
Q ss_pred EEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-
Q 016712 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ- 256 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~- 256 (384)
.--|.+.-|.++..+..+-. ++..+.-.|..-..+... ..+.-+-++|-+.|++-.-.. -.+...+++|+||||.
T Consensus 96 CTQprrvaamsva~RVadEM-Dv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEM-DVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHER 171 (699)
T ss_pred ecCchHHHHHHHHHHHHHHh-ccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhh
Confidence 77899988888887766533 122111111110000000 000001134444444333222 2478899999999994
Q ss_pred ccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 257 MLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 257 ~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
-+.. -...-++.++..- ++..+|.||||+.. .....|+.++-.+.+++
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG 220 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC
Confidence 2211 1222334444443 58999999999763 35677888888787764
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.71 E-value=7.1e-08 Score=100.23 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=94.4
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|.. |++.|.-..=.+. +..|..+.||.|||+++.+|++-..+ .|..|-|++++..||.+-++.+..+
T Consensus 73 lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred hCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHHH
Confidence 3774 8999987764444 45699999999999999999964432 3677999999999999988888876
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHH-HHHHccC------CCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVI-DLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+. .....+||++||...+- ++++.+. .....+.+.||||+|.++
T Consensus 141 y~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHcCCceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 54 5677777676655443 33445899999997653 3443332 124568999999999875
No 138
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.67 E-value=2.3e-07 Score=99.99 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=97.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+..+|.--+|||||++....+-..+ .. ...+.++||+-.++|-.|+.+.|..+........ ...+..+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-EL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKE 344 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-hc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHH
Confidence 4689999999999998655543333 21 4578899999999999999999999875433323 4445555566
Q ss_pred HHhcC-CCEEEECchhHHHHHHccC-CCCC-CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 217 ALDYG-VDAVVGTPGRVIDLIKRNA-LNLS-EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~-~~IlV~Tp~~l~~~l~~~~-~~~~-~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.+..+ ..|+|+|-.+|........ .... +==+||+||||+- .++.....+-..+ ++..+++||.||.-.
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi~~ 416 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPIFK 416 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCcccc
Confidence 66655 4899999999987775541 1111 2226899999983 2444444444444 458899999998543
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.3e-07 Score=98.20 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|...--.+..| .|..+.||-|||+++.+|++-..+ .|..|-||+++..||..=.+.+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 376 4888998776556555 489999999999999999886553 3777999999999999877777765
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-----HHHHHc--cCCCCCCccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-----IDLIKR--NALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-----~~~l~~--~~~~~~~l~~vViDEah~~~ 258 (384)
+. ++.+.+..++.+..+ +.....+||++||+..| .+.+.. .......+.+.||||+|.++
T Consensus 150 y~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 54 677777766654433 34455799999999987 333321 12235678999999999875
No 140
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.67 E-value=2.9e-06 Score=84.86 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=91.3
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-C--
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-P-- 198 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~-- 198 (384)
....+.+.+..+-...-++++|.||||||. .+|- .+... +-..++.+-+--|.|.-|..++++..+-. .
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~Q--yL~ed----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQ--YLYED----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHH--HHHhc----ccccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 345566666667677778999999999997 3442 23221 11234456667799999988888876633 2
Q ss_pred --CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc-ccCCC-hHHHHHHHHHHCC
Q 016712 199 --SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ-MLSVG-FAEDVEVILERLP 274 (384)
Q Consensus 199 --~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~-~~~~~-~~~~~~~il~~l~ 274 (384)
.++..+-+.+.... ...|-+.|-|.|+.-.... -.+....+||+||||. -++.. ....++..+++ +
T Consensus 429 G~~VGYsIRFEdvT~~--------~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-R 498 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSE--------DTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-R 498 (1042)
T ss_pred ccccceEEEeeecCCC--------ceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-h
Confidence 22222222222211 2468889999887654332 2367889999999994 22222 11122333332 3
Q ss_pred CCCcEEEEEccCCh
Q 016712 275 QNRQSMMFSATMPP 288 (384)
Q Consensus 275 ~~~q~l~~SAT~~~ 288 (384)
.+..+|++|||+.-
T Consensus 499 rdlKliVtSATm~a 512 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDA 512 (1042)
T ss_pred ccceEEEeeccccH
Confidence 57889999999863
No 141
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.66 E-value=3.1e-07 Score=96.95 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=85.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH---------HhCCCCc--eEEEE
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH---------ESAPSLD--TICVY 206 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~---------~~~~~~~--~~~~~ 206 (384)
++.+.++||+|||.+|+-.++..... ..-.+.||+||+.+.-..+.+.+. ..+.+.+ ..++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 78999999999999998887765433 234579999999998887776554 2232332 23333
Q ss_pred CCC-------ChHHHHHHHhc-------CCCEEEECchhHHHHHH-cc---------C-CCCCCc----cEEEEeCcccc
Q 016712 207 GGT-------PISHQMRALDY-------GVDAVVGTPGRVIDLIK-RN---------A-LNLSEV----QFVVLDEADQM 257 (384)
Q Consensus 207 g~~-------~~~~~~~~~~~-------~~~IlV~Tp~~l~~~l~-~~---------~-~~~~~l----~~vViDEah~~ 257 (384)
++. ......+.... ..+|+|.|-+.|..-.. .. . ..+..+ -.||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 11223233322 46899999888754221 00 0 111111 26899999998
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
...+ ...+.| ..+.+.+ ++.+|||.+.
T Consensus 214 ~~~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRDN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred Ccch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 6532 233444 5565444 5779999987
No 142
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.65 E-value=3.3e-07 Score=81.02 Aligned_cols=145 Identities=16% Similarity=0.222 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH-------HH
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-------KE 192 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~-------~~ 192 (384)
...+..|..++..++...-+++.||.|+|||+.++..+++.+.+ +.-.+++|+-|..+..+++- +.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34689999999999977789999999999999998888888755 34567888888876533221 11
Q ss_pred HHHhCCCCceEE-EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHH
Q 016712 193 FHESAPSLDTIC-VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (384)
Q Consensus 193 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~ 271 (384)
+.-+. .... .............+.....|-+..+..+ + ...+++ .+||||||+.+ -..+++.++.
T Consensus 76 ~~p~~---~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~----t~~~~k~ilT 141 (205)
T PF02562_consen 76 MEPYL---RPIYDALEELFGKEKLEELIQNGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNL----TPEELKMILT 141 (205)
T ss_dssp --TTT---HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHH---HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh----c--Cccccc-eEEEEecccCC----CHHHHHHHHc
Confidence 11000 0000 0000001111222223345666654332 1 122333 78999999986 4568899999
Q ss_pred HCCCCCcEEEEEcc
Q 016712 272 RLPQNRQSMMFSAT 285 (384)
Q Consensus 272 ~l~~~~q~l~~SAT 285 (384)
++..++.++++--.
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99999988887443
No 143
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.65 E-value=3.3e-07 Score=96.05 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=56.7
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
....++++.|.+.+..+. .++.+++.||||+|||++|++|++..... .+..++|.++|+.|-.|+.+.
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--------~~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--------EGKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--------cCCcEEEECCCHHHHHHHHHh
Confidence 344579999999986543 45569999999999999999999988754 357799999999999998655
Q ss_pred HH
Q 016712 193 FH 194 (384)
Q Consensus 193 ~~ 194 (384)
..
T Consensus 83 ~~ 84 (654)
T COG1199 83 DL 84 (654)
T ss_pred hc
Confidence 43
No 144
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.64 E-value=3.6e-07 Score=92.65 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=104.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+.+||++++.-+. ++..-|+--..|-|||.- .+..+..+.... .....+|||||.. ++.||.++|..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-----k~~~paLIVCP~T-ii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-----KLTKPALIVCPAT-IIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc-----cccCceEEEccHH-HHHHHHHHHHHh
Confidence 57899999987654 455678888999999972 223333332211 1135699999986 668899999999
Q ss_pred CCCCceEEEECCCCh--------HHHHH-----HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 197 APSLDTICVYGGTPI--------SHQMR-----ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~--------~~~~~-----~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
++.+.+.++++..+. ..... ....+.+|+|+|.+.+.- ....+.-..++++|+||.|++-+..
T Consensus 278 ~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn-- 353 (923)
T KOG0387|consen 278 WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN-- 353 (923)
T ss_pred CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc--
Confidence 999999998877652 11111 112246899999776522 2223334568999999999987753
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 264 EDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.++......++ ..+.|++|.|+..+
T Consensus 354 s~islackki~-T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 354 SKISLACKKIR-TVHRIILSGTPIQN 378 (923)
T ss_pred cHHHHHHHhcc-ccceEEeeCccccc
Confidence 34455555664 46677779997543
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=5.3e-07 Score=95.04 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCCCcHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 119 ISKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
|..++|.|.+.+..+ ..+++.++.+|||+|||++.+.|++...... ...++++|.+.|..-..|..++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHHHHH
Confidence 444599999887654 4678999999999999999999999876431 123689999999999999999988
Q ss_pred Hh
Q 016712 195 ES 196 (384)
Q Consensus 195 ~~ 196 (384)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 146
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.56 E-value=7.9e-06 Score=84.85 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.|+..|..+|..+.++ +..++.|-||||||+... .++..+ +..+|||+|+..+|.|++..|+.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~-----------~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQV-----------NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 5999999999887544 367799999999998642 233322 34599999999999999999999
Q ss_pred hCCCCceEEE
Q 016712 196 SAPSLDTICV 205 (384)
Q Consensus 196 ~~~~~~~~~~ 205 (384)
++++-.+..+
T Consensus 77 f~p~~~V~~f 86 (655)
T TIGR00631 77 FFPENAVEYF 86 (655)
T ss_pred hCCCCeEEEE
Confidence 9875334333
No 147
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.55 E-value=5.7e-07 Score=81.19 Aligned_cols=74 Identities=19% Similarity=0.348 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
++.+.|.+|+..++.... .+|.||+|+|||... ..++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999888 999999999999643 33444431100001124578899999999999999999888
No 148
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.53 E-value=1.3e-07 Score=92.37 Aligned_cols=213 Identities=13% Similarity=0.064 Sum_probs=127.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+-++=+|||.||||.-+ ++++.. .+..+|--|.+.||.++++++.+.+ +++..++|.......-.
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~---------aksGvycGPLrLLA~EV~~r~na~g--ipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS---------AKSGVYCGPLRLLAHEVYDRLNALG--IPCDLLTGEERRFVLDN 256 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh---------hccceecchHHHHHHHHHHHhhhcC--CCccccccceeeecCCC
Confidence 34566899999999854 455533 4558999999999999999999986 55555665422111100
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHH-HHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVI-LERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~i-l~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
...++.+=||.++..- -..+++.||||++.|-+...+-.+..- +..........+ .+.+..+++
T Consensus 257 --~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~ 321 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVR 321 (700)
T ss_pred --CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHH
Confidence 1125677777665411 124788999999999887665555443 333233343333 244555555
Q ss_pred HhcC---CCeEEEecCCCcccccCCeEEE--EEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcce-EEEecCCCChhhh
Q 016712 296 KYLK---NPLTVDLVGDSDQKLADGISLY--SIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVI-IVSLCMGISHKAR 369 (384)
Q Consensus 296 ~~l~---~~~~i~~~~~~~~~~~~~i~~~--~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~-v~~~hg~m~~~eR 369 (384)
..+. +.++++.- ++ +..+... ....-.+-...+-+++..++.+-.+...+...|.. +++++|+++++.|
T Consensus 322 ~i~k~TGd~vev~~Y--eR---l~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr 396 (700)
T KOG0953|consen 322 KILKMTGDDVEVREY--ER---LSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETR 396 (700)
T ss_pred HHHhhcCCeeEEEee--cc---cCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchh
Confidence 5443 44554421 10 0000000 00000111222333444556666666666666554 9999999999999
Q ss_pred hchhhhhhc--CCcccC
Q 016712 370 GRGPFQLSE--MDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~--~~~~V~ 384 (384)
.+--..|.+ +|.||+
T Consensus 397 ~aQA~~FNd~~~e~dvl 413 (700)
T KOG0953|consen 397 LAQAALFNDPSNECDVL 413 (700)
T ss_pred HHHHHHhCCCCCccceE
Confidence 999999998 888874
No 149
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.50 E-value=5.5e-07 Score=91.24 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=106.7
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.|+. +-+||.-.++.+. .+.+.|+.-..|-|||.- +++.+..+.+. +..+.-|||||.--|-+ |.++
T Consensus 396 s~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~------g~~gpHLVVvPsSTleN-WlrE 466 (941)
T KOG0389|consen 396 SGIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI------GNPGPHLVVVPSSTLEN-WLRE 466 (941)
T ss_pred CCCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc------CCCCCcEEEecchhHHH-HHHH
Confidence 3554 8899998887643 567889999999999963 34444444331 22334799999987754 9999
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHh-c---CCCEEEECchhHHHHHH-ccCCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALD-Y---GVDAVVGTPGRVIDLIK-RNALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~---~~~IlV~Tp~~l~~~l~-~~~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
|.+++|.+.+..+||......+.+... . +.+|+++|......--. +..+.-.++.++|+||.|.+-+.+ ...+.
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~ 545 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYK 545 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHH
Confidence 999999999999999876655554432 2 48999999765532111 112223468899999999765542 22233
Q ss_pred HHHHHCCCCCcEEEEEccCC
Q 016712 268 VILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~ 287 (384)
.++. ++ ..+.|++|.||=
T Consensus 546 ~LM~-I~-An~RlLLTGTPL 563 (941)
T KOG0389|consen 546 HLMS-IN-ANFRLLLTGTPL 563 (941)
T ss_pred Hhcc-cc-ccceEEeeCCcc
Confidence 3332 22 456788899973
No 150
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.43 E-value=3e-05 Score=75.98 Aligned_cols=213 Identities=20% Similarity=0.215 Sum_probs=138.9
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCC-CceE------EEEC--------------CCChHHHHHHH-----------
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPS-LDTI------CVYG--------------GTPISHQMRAL----------- 218 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~-~~~~------~~~g--------------~~~~~~~~~~~----------- 218 (384)
-..|+||||+|+|.-|.++.+.+-++.+. ..+. .-+| ..........+
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35789999999999999999888776643 1100 0111 00011111111
Q ss_pred --------------hcCCCEEEECchhHHHHHHc------cCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC---CC
Q 016712 219 --------------DYGVDAVVGTPGRVIDLIKR------NALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQ 275 (384)
Q Consensus 219 --------------~~~~~IlV~Tp~~l~~~l~~------~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l---~~ 275 (384)
..++||||++|=-|...+.. ..-.++.+.++|||.+|.++..+ ...+..+++.+ |+
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCC
Confidence 12479999999999887764 23357889999999999877663 45566666655 22
Q ss_pred ---------------------CCcEEEEEccCChhHHHHHHHhcCCCe-EEEecCCCc-----ccccCCeEEEEEEeccc
Q 016712 276 ---------------------NRQSMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSD-----QKLADGISLYSIATSMN 328 (384)
Q Consensus 276 ---------------------~~q~l~~SAT~~~~~~~~~~~~l~~~~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~ 328 (384)
-+|+|++|+...+++..+....+.|.. .+.+..... ..+...+.|.....+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 169999999999999999999777643 333322222 24445566666543322
Q ss_pred ------hhhHHHHHHHHhHhH-------------------HHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 329 ------MQKVENALFSLKQNV-------------------MQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 329 ------~~k~~~l~~~~~~~~-------------------~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.+.......+.... -++-..|...++..+.+|=-.+..+-.++-..|.+|+..|
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 122221111111111 1666777778999999999999999999999999999876
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 354 L 354 (442)
T PF06862_consen 354 L 354 (442)
T ss_pred E
Confidence 4
No 151
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.42 E-value=1.6e-06 Score=76.76 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
++++-|.+++..++... -.++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~~~---- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREKTG---- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHhhC----
Confidence 47899999999996543 477889999999984 3444444433 36789999999999887665521
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc---C----CCCCCccEEEEeCcccccCCChHHHHHHHHH
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---A----LNLSEVQFVVLDEADQMLSVGFAEDVEVILE 271 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~---~----~~~~~l~~vViDEah~~~~~~~~~~~~~il~ 271 (384)
.. ..| +..++... . ..+...++|||||+-.+.. ..+..++.
T Consensus 68 -~~------------------------a~T---i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~ 115 (196)
T PF13604_consen 68 -IE------------------------AQT---IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLR 115 (196)
T ss_dssp -S-------------------------EEE---HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHH
T ss_pred -cc------------------------hhh---HHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHH
Confidence 11 111 11111111 0 1145667999999997533 46677777
Q ss_pred HCCC-CCcEEEEEcc
Q 016712 272 RLPQ-NRQSMMFSAT 285 (384)
Q Consensus 272 ~l~~-~~q~l~~SAT 285 (384)
..+. +.++|++-=+
T Consensus 116 ~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 116 LAKKSGAKLILVGDP 130 (196)
T ss_dssp HS-T-T-EEEEEE-T
T ss_pred HHHhcCCEEEEECCc
Confidence 7766 6677776443
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.40 E-value=3.1e-06 Score=89.57 Aligned_cols=164 Identities=20% Similarity=0.176 Sum_probs=94.5
Q ss_pred CcHHHHHHHHHHhC--------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQ--------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~--------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
-+.+|-.|++.+.. |--+|-.|.||+|||++= .-++..+.+ ...|.+..|-.-.|.|-.|.-+.+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd------~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD------DKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC------CCCCceEEEEccccceeccchHHH
Confidence 46799999987663 224666799999999964 333444422 234567777777777777766666
Q ss_pred HHhCC--CCceEEEECCC-------------------------------------------ChHHHHHHHhc--------
Q 016712 194 HESAP--SLDTICVYGGT-------------------------------------------PISHQMRALDY-------- 220 (384)
Q Consensus 194 ~~~~~--~~~~~~~~g~~-------------------------------------------~~~~~~~~~~~-------- 220 (384)
++... +-...++.|+. ........+.+
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 55321 11112222221 11100111110
Q ss_pred CCCEEEECchhHHHHHHc--c-CCCCC--C--ccEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHH
Q 016712 221 GVDAVVGTPGRVIDLIKR--N-ALNLS--E--VQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 221 ~~~IlV~Tp~~l~~~l~~--~-~~~~~--~--l~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~ 292 (384)
...|+|||++.++..... . ...+. . =+.|||||+|.+... ....+..++..+. -...+++||||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 268999999998876622 1 11111 1 246999999975433 2333444444322 368899999999998654
Q ss_pred H
Q 016712 293 L 293 (384)
Q Consensus 293 ~ 293 (384)
.
T Consensus 641 ~ 641 (1110)
T TIGR02562 641 T 641 (1110)
T ss_pred H
Confidence 3
No 153
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.3e-06 Score=85.87 Aligned_cols=144 Identities=18% Similarity=0.220 Sum_probs=84.4
Q ss_pred HHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCC-CCCEEEEEecCHHHHHHHHHHHHH-h---CCCCceEE
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRG-RNPLCLVLAPTRELAKQVEKEFHE-S---APSLDTIC 204 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~-~~~~~lvl~Pt~~La~q~~~~~~~-~---~~~~~~~~ 204 (384)
++.|...--+||||.||||||. .+|-+ +.+..-..... .+.-+=|--|.|.-|..+.++... + +..+...+
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccc--cchHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 3444444568999999999997 56633 33322211111 233566777888777766655443 2 22233333
Q ss_pred EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc-CC----ChHHHHHHHHHHCCC----
Q 016712 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SV----GFAEDVEVILERLPQ---- 275 (384)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~-~~----~~~~~~~~il~~l~~---- 275 (384)
-+.++- .....|.+.|-|-|+.-+.+.. .+.....|||||||.=. .. |....+-.+-..+..
T Consensus 341 Rfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred Eecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 333322 2236899999999988887654 47889999999999522 11 111111111112222
Q ss_pred --CCcEEEEEccC
Q 016712 276 --NRQSMMFSATM 286 (384)
Q Consensus 276 --~~q~l~~SAT~ 286 (384)
....|+||||+
T Consensus 412 ~kpLKLIIMSATL 424 (1172)
T KOG0926|consen 412 IKPLKLIIMSATL 424 (1172)
T ss_pred cCceeEEEEeeeE
Confidence 45699999997
No 154
>PRK10536 hypothetical protein; Provisional
Probab=98.27 E-value=3.7e-05 Score=70.07 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH-------H
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-------E 190 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~-------~ 190 (384)
++...+..|...+..+.+...+++.|++|+|||+.+....+..+.. +.-.++++.-|+.+....+ .
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 5666788999999999888889999999999999887777766543 1233455555655432211 1
Q ss_pred HHHHHh----CCCCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHH
Q 016712 191 KEFHES----APSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (384)
Q Consensus 191 ~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~ 265 (384)
+.+..+ +..+.. +.+. ......+. ..-.|-|... .+++... +. -++||||||+.+. ..+
T Consensus 129 eK~~p~~~pi~D~L~~--~~~~---~~~~~~~~~~~~~Iei~~l----~ymRGrt--l~-~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR--RLGA---SFMQYCLRPEIGKVEIAPF----AYMRGRT--FE-NAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHHHHH--HhCh---HHHHHHHHhccCcEEEecH----HHhcCCc--cc-CCEEEEechhcCC----HHH
Confidence 111111 100100 0111 11111111 1124445442 3333222 32 3799999999763 367
Q ss_pred HHHHHHHCCCCCcEEEE
Q 016712 266 VEVILERLPQNRQSMMF 282 (384)
Q Consensus 266 ~~~il~~l~~~~q~l~~ 282 (384)
++.++.++..+..+|+.
T Consensus 193 ~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 193 MKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHhhcCCCCEEEEe
Confidence 88899999988888875
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.26 E-value=5e-06 Score=87.38 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++.||...++.+. +.-|-|+.-..|-|||.- .+.++.++....... | --||||||-.+.+ |.-+|+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnW----G-PHLIVVpTsviLn-WEMElKRw 687 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNW----G-PHLIVVPTSVILN-WEMELKRW 687 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCC----C-CceEEeechhhhh-hhHHHhhh
Confidence 35778888776543 234789999999999974 466666665432221 2 2689999977655 88899999
Q ss_pred CCCCceEEEECCCChHH-HHHHHhc--CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 197 APSLDTICVYGGTPISH-QMRALDY--GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~-~~~~~~~--~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
++++++..++|...... ....|.+ .-||.|++...+..-+. .+.-+++.|+|+||+|++-++ -...++.++..
T Consensus 688 cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf-ksqrWQAllnf- 763 (1958)
T KOG0391|consen 688 CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF-KSQRWQALLNF- 763 (1958)
T ss_pred CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch-hHHHHHHHhcc-
Confidence 99999999999754332 3334443 25888888766544332 233457899999999998765 23345555543
Q ss_pred CCCCcEEEEEccCCh
Q 016712 274 PQNRQSMMFSATMPP 288 (384)
Q Consensus 274 ~~~~q~l~~SAT~~~ 288 (384)
...+.++++.|+-.
T Consensus 764 -nsqrRLLLtgTPLq 777 (1958)
T KOG0391|consen 764 -NSQRRLLLTGTPLQ 777 (1958)
T ss_pred -chhheeeecCCchh
Confidence 24667888888643
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.23 E-value=1.2e-05 Score=83.18 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=96.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ 216 (384)
-.++.+|.|+|||.+..-++-..+ . ..+.++|+|+..+.|+.+....|+..+ .++....-.++....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l-~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~---- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDAL-K-------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIID---- 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhc-c-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccccc----
Confidence 368899999999986544433322 1 246789999999999999999998764 122211111111000
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHH-------HHHHHHHCCCCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED-------VEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~-------~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
....+-+++..++|.... ...+++.++|||||+-..+..-|.+. +..+...+.....+|++-||+...
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 012467788878775543 22466789999999987765533222 222333455677899999999999
Q ss_pred HHHHHHHhcCC
Q 016712 290 IRSLTNKYLKN 300 (384)
Q Consensus 290 ~~~~~~~~l~~ 300 (384)
+-+++..+-.+
T Consensus 194 tvdFl~~~Rp~ 204 (824)
T PF02399_consen 194 TVDFLASCRPD 204 (824)
T ss_pred HHHHHHHhCCC
Confidence 99998886543
No 157
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.22 E-value=6.2e-06 Score=85.78 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .|++.|.-.-=.+..|+ |....||-|||+++.+|++-..+ .|..|-|++..--||..=.+.+..++
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHHH
Confidence 76 58999988776666664 89999999999999999865443 36779999999999986666666554
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
. ++.+.+...+.+..+. .-...+||++||...| .++|+.+. .....+.+.||||+|.++
T Consensus 144 ~fLGLsvG~i~~~~~~~~r--r~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLK--REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHhCCceeeeCCCCChHHH--HHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 3 5677777665554443 3344689999999876 34454332 124678899999999875
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.20 E-value=3.7e-06 Score=84.39 Aligned_cols=163 Identities=22% Similarity=0.224 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC-CCEEEEEecCHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR-NPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~-~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.+-|+|..++..+.-. ..-|+....|-|||++.+-.+++.-........... ...+|||||- .|+.||+.++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 4678999998766532 357888999999999765444443322222211111 1259999996 57889999988
Q ss_pred HhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHH----HHHccC--CCCC--CccEEEEeCcccccCCChHH
Q 016712 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID----LIKRNA--LNLS--EVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~----~l~~~~--~~~~--~l~~vViDEah~~~~~~~~~ 264 (384)
.... .+.|.+++|.....-..+.+ ...||||+|..-+.. -..... ..+- .+..||+||||.+-+.. .
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~--t 480 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN--T 480 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc--h
Confidence 7653 35666677765422222233 348999999865544 111110 0111 35689999999876642 2
Q ss_pred HHHHHHHHCCCCCcEEEEEccCCh
Q 016712 265 DVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 265 ~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
+-..-+..|...+ .-++|+|+..
T Consensus 481 q~S~AVC~L~a~~-RWclTGTPiq 503 (901)
T KOG4439|consen 481 QCSKAVCKLSAKS-RWCLTGTPIQ 503 (901)
T ss_pred hHHHHHHHHhhcc-eeecccCccc
Confidence 2222333443333 3455777643
No 159
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.20 E-value=0.00015 Score=75.77 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=56.5
Q ss_pred CCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.| .|++.|..++..+.++ +..++.|.+|+|||+... .++... +..+|||+|+...|.|+++.
T Consensus 10 ~~-~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 10 PY-KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CC-CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHH
Confidence 44 5999999999887543 257899999999998642 233221 34599999999999999999
Q ss_pred HHHhCCCCceEEE
Q 016712 193 FHESAPSLDTICV 205 (384)
Q Consensus 193 ~~~~~~~~~~~~~ 205 (384)
++.++++-.+..+
T Consensus 77 L~~~~~~~~v~~f 89 (652)
T PRK05298 77 FKEFFPENAVEYF 89 (652)
T ss_pred HHHhcCCCeEEEe
Confidence 9998765434333
No 160
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.19 E-value=4.1e-05 Score=70.93 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=133.0
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC----------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC
Q 016712 103 KLDISQDIVAALARRGISKLFPIQKAVLEPAMQ----------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (384)
Q Consensus 103 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 172 (384)
.+.|++.++. .| .++..|.+++-...+ +.-.++--.||.||.-...--++..... .
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------G 90 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------G 90 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------C
Confidence 3456665553 34 479999999865542 2346666679999877544445555533 2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCC-CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc---CCCC-----
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPS-LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN---ALNL----- 243 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~---~~~~----- 243 (384)
..++|+++.+..|-.+..+.++..+.. +.+..+..-. .. .. ..-.-.|+++|...|...-..+ ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~-~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFK-YG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCCcccceechhhc-cC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 456999999999999999999988742 2222221110 00 00 1113479999998876654211 1111
Q ss_pred ---CC-ccEEEEeCcccccCCC--------hHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCc
Q 016712 244 ---SE-VQFVVLDEADQMLSVG--------FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSD 311 (384)
Q Consensus 244 ---~~-l~~vViDEah~~~~~~--------~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 311 (384)
.+ =++||+||||.+-+.. -+..+..+.+++| +.+++.+|||-..+.++|. |+ ..+.+-+. .
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~Nma--Ym---~RLGLWG~-g 239 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRNMA--YM---SRLGLWGP-G 239 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCceee--ee---eeccccCC-C
Confidence 11 2489999999886542 2245555666775 5669999999877766653 22 11111110 0
Q ss_pred ccccCCeEEEEEEecc-chhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhh
Q 016712 312 QKLADGISLYSIATSM-NMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKAR 369 (384)
Q Consensus 312 ~~~~~~i~~~~~~~~~-~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR 369 (384)
.+. .....+....+. ...-.|.+-..+.....-++..+...|+.....+-.|++++.
T Consensus 240 tpf-~~~~~f~~a~~~gGv~amE~vA~dlKa~G~yiaR~LSf~gvef~~~e~~l~~~~~ 297 (303)
T PF13872_consen 240 TPF-PDFDDFLEAMEKGGVGAMEMVAMDLKARGMYIARQLSFEGVEFEIEEVPLTPEQI 297 (303)
T ss_pred CCC-CCHHHHHHHHHhcCchHHHHHHHHHHhcchheeeecccCCceEEEEEecCCHHHH
Confidence 000 000000000000 001112222223344444555556668888888889988764
No 161
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.19 E-value=1.1e-05 Score=78.11 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 120 SKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+-|+|.+.+... .+|..+++.-..|-|||+-++.-+..... ..-.||+||.. +-..|.+.+..+++
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra----------EwplliVcPAs-vrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA----------EWPLLIVCPAS-VRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh----------cCcEEEEecHH-HhHHHHHHHHHhcc
Confidence 35689999988765 46778889999999999966433332221 22378889974 55678999999887
Q ss_pred CCc-eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCC
Q 016712 199 SLD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR 277 (384)
Q Consensus 199 ~~~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~ 277 (384)
.+. +.++.++.+.-.. +-....|.|.+.+.+..+-. .+.-...++||+||.|++-+. -....+.++..+..-.
T Consensus 266 s~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 266 SIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAK 339 (689)
T ss_pred cccceEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhh
Confidence 543 3444444322111 11124688888887644322 233445889999999976554 3334555555555567
Q ss_pred cEEEEEccC
Q 016712 278 QSMMFSATM 286 (384)
Q Consensus 278 q~l~~SAT~ 286 (384)
.+|++|.|+
T Consensus 340 hvILLSGTP 348 (689)
T KOG1000|consen 340 HVILLSGTP 348 (689)
T ss_pred heEEecCCc
Confidence 799999997
No 162
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.19 E-value=8.9e-06 Score=78.74 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=68.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~ 216 (384)
-++|.|..|||||++++ -++..+.. ...+..++++++...|...+.+.+.... +..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~---------------- 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYNPKL---------------- 59 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcccch----------------
Confidence 36889999999999763 33333311 1346779999999999998888887644 100
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-------hHHHHHHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAEDVEVILER 272 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-------~~~~~~~il~~ 272 (384)
....+..+..+...+........+.++|||||||++...+ ....+..+++.
T Consensus 60 -----~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 -----KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1222333333333222223446789999999999998731 24566677666
No 163
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.19 E-value=1.3e-06 Score=91.06 Aligned_cols=152 Identities=21% Similarity=0.315 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC--C
Q 016712 122 LFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~--~ 198 (384)
..|.|.+.+..+.. +.+.++-+|||+|||++|.+.++..+.. .++.+++||+|.++|+..-.+.+.... +
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhcccC
Confidence 34555554433322 3578999999999999999999988755 456789999999999998877777654 3
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--CCCCCCccEEEEeCcccccCCChHHHHHHHHHHC---
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL--- 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l--- 273 (384)
+++++.+.|+.... ...+. .++++|+||++.....++| .-.+.+++.+|+||.|++.+. +++.++.+....
T Consensus 1001 g~k~ie~tgd~~pd--~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCC--hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 67777777776554 22222 3799999999998877754 335789999999999976554 555554443333
Q ss_pred ----CCCCcEEEEEc
Q 016712 274 ----PQNRQSMMFSA 284 (384)
Q Consensus 274 ----~~~~q~l~~SA 284 (384)
++.++.+++|-
T Consensus 1077 s~~t~~~vr~~glst 1091 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLST 1091 (1230)
T ss_pred ccccCcchhhhhHhh
Confidence 23455666543
No 164
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.16 E-value=1.7e-05 Score=84.06 Aligned_cols=167 Identities=18% Similarity=0.146 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHh--C--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM--Q--GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~--~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++.||++.++.+. . +=+-|+|-+.|-|||+-.+.-+......++.........-.|||||.. |+-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHh
Confidence 35789999887643 2 237899999999999954333322222221122222334489999985 788899999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
++.+++....|+...+...+.-.++.+|+|++.+.+..-+.. +.-.++.|+|+||-|-|-+. ...+.+..+.+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 998888888887665555555555689999998776533211 11235779999999976553 34445555666544
Q ss_pred CcEEEEEccCCh-hHHHH
Q 016712 277 RQSMMFSATMPP-WIRSL 293 (384)
Q Consensus 277 ~q~l~~SAT~~~-~~~~~ 293 (384)
. .+.+|.||.. ++.++
T Consensus 1130 h-RLILSGTPIQNnvleL 1146 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLEL 1146 (1549)
T ss_pred c-eEEeeCCCcccCHHHH
Confidence 4 5566999743 34443
No 165
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.03 E-value=2.1e-05 Score=83.48 Aligned_cols=158 Identities=19% Similarity=0.264 Sum_probs=105.2
Q ss_pred CCCcHHHHHHHHHH----hCCCcEEEEccCCCchhHH---HHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLA---FGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~---~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
..++.+|.+.++-+ ..+.++|+.-..|-|||+- |+-.+++.. ...|| .||++|.--+. -|.++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~--------~~~gp-flvvvplst~~-~W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL--------QIHGP-FLVVVPLSTIT-AWERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh--------hccCC-eEEEeehhhhH-HHHHH
Confidence 57999999988764 4678999999999999973 333333322 12344 68888876554 48889
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHhc---------CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALDY---------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
|..+. ++++++++|.....+.++...- ..+++++|.+.++.-.. .+.--.+.+++|||||++-+. .
T Consensus 439 f~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~ 513 (1373)
T KOG0384|consen 439 FETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--E 513 (1373)
T ss_pred HHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--H
Confidence 99988 8999999999887776665532 26899999887654221 111224679999999998754 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCC-hhHHHH
Q 016712 264 EDVEVILERLPQNRQSMMFSATMP-PWIRSL 293 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~-~~~~~~ 293 (384)
..+...+..+.-+. .+++|.||- +.+.++
T Consensus 514 ~~l~~~l~~f~~~~-rllitgTPlQNsikEL 543 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNH-RLLITGTPLQNSLKEL 543 (1373)
T ss_pred HHHHHHHHHhcccc-eeeecCCCccccHHHH
Confidence 22333355554444 455677763 344444
No 166
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.01 E-value=0.0001 Score=75.89 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=86.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~ 201 (384)
..++|+.|+...+..+-.+|.|++|+|||.+. .-++..+... ......++++.+||..-|..+.+.+......+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~----~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQL----ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHh----cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 35899999999999899999999999999853 3333333221 011245788999999999888887766443332
Q ss_pred eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH------ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC
Q 016712 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ 275 (384)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~------~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~ 275 (384)
.. ... ......-..|-.+++.... .+.-+.-.+++|||||+-++ + ...+..+++.+++
T Consensus 228 ~~--------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~ 291 (615)
T PRK10875 228 LT--------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALPP 291 (615)
T ss_pred cc--------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhccc
Confidence 10 000 0000111222222221110 11112234689999999854 3 3456778888999
Q ss_pred CCcEEEEEcc
Q 016712 276 NRQSMMFSAT 285 (384)
Q Consensus 276 ~~q~l~~SAT 285 (384)
++++|++-=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 9888887543
No 167
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.01 E-value=8.4e-05 Score=77.24 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 120 SKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
..+++.|..|+..++.. ...+|.||+|+|||.... .++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK--------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH--------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 35799999999998876 678899999999998653 33333332 3568999999999999998888763
No 168
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.97 E-value=5.8e-05 Score=73.28 Aligned_cols=127 Identities=25% Similarity=0.255 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHhCCC-----cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQGR-----DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~-----d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.+-|+|.+.+..+.... .-|+.-..|.|||.-.+.-++.. -.+..+||++|+.+|. ||.+++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----------~~ra~tLVvaP~VAlm-QW~nEI~~ 252 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----------VDRAPTLVVAPTVALM-QWKNEIER 252 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----------cccCCeeEEccHHHHH-HHHHHHHH
Confidence 47899999886655432 35778889999998654443332 2355699999999885 68888888
Q ss_pred hCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-------------CCC--CccEEEEeCcccccC
Q 016712 196 SAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-------------NLS--EVQFVVLDEADQMLS 259 (384)
Q Consensus 196 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-------------~~~--~l~~vViDEah~~~~ 259 (384)
... .+++.+++|...... .+.+. +.|++.+|...+-...+.... .+. ++-.||+||||.+-+
T Consensus 253 ~T~gslkv~~YhG~~R~~n-ikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 253 HTSGSLKVYIYHGAKRDKN-IKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred hccCceEEEEEecccccCC-HHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc
Confidence 765 456666666544332 23333 479999999888776644211 122 245699999998865
Q ss_pred C
Q 016712 260 V 260 (384)
Q Consensus 260 ~ 260 (384)
.
T Consensus 331 R 331 (791)
T KOG1002|consen 331 R 331 (791)
T ss_pred c
Confidence 4
No 169
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.95 E-value=2e-05 Score=83.19 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
.+++.|.-.=-.+.+|+ |..+.||-|||+++.+|++-..+. |..|-|++-.--||..=.+.+..++.
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~RDaewm~p~y~fl 206 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQRDKEWMNPVFEFH 206 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhhhhHHHHHHHHHHh
Confidence 47788876655555555 889999999999999999766543 56688889999999865555555432
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
++.+.|+..+.+.. .+.-...+||++||..-| .++|+.+. .....+.+.||||+|.++
T Consensus 207 GLtVg~i~~~~~~~--~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 207 GLSVGVILNTMRPE--ERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCeeeeeCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 67788776554433 344556789999998766 34443331 124668899999999875
No 170
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.95 E-value=0.00017 Score=76.17 Aligned_cols=133 Identities=24% Similarity=0.251 Sum_probs=80.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++ .+++.|.+|+..+..++-+++.|+.|+|||.+. ..++..+... +....+++++||-.-|..+.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e~~--- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL------GGLLPVGLAAPTGRAAKRLGEVT--- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc------CCCceEEEEeCchHHHHHHHHhc---
Confidence 455 699999999999998889999999999999853 3444443221 11156888999988776543321
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+... .+ ..+.+....+ ..... ..-.....++|||||++++.. ..+..+++.++..
T Consensus 389 --g~~a------~T---ih~lL~~~~~-------~~~~~---~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 389 --GLTA------ST---IHRLLGYGPD-------TFRHN---HLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDH 443 (720)
T ss_pred --CCcc------cc---HHHHhhccCC-------ccchh---hhhccccCCEEEEeccccCCH----HHHHHHHHhCCCC
Confidence 1110 00 0001110000 00000 000123578999999996533 3457777888888
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
.++|++-=+
T Consensus 444 ~rlilvGD~ 452 (720)
T TIGR01448 444 ARLLLVGDT 452 (720)
T ss_pred CEEEEECcc
Confidence 888887433
No 171
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.95 E-value=0.00017 Score=74.16 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCce
Q 016712 123 FPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDT 202 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~ 202 (384)
.++|+.|+..++..+-.++.|+.|+|||.+. ..++..+...... ..+.++++.+||-.-+..+.+.+......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 4899999999999999999999999999853 3333333221110 11357999999998888877776654432221
Q ss_pred EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH------ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 203 ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~------~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
. ... .....+-..|-.+++.... ...-+.-.+++|||||+-++ + ...+..+++.++++
T Consensus 223 ~--------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 A--------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPPN 286 (586)
T ss_pred c--------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCCC
Confidence 0 000 0001111233322222111 01112335799999999854 3 23567788889888
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
.++|++-=.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888887433
No 172
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.93 E-value=5.4e-05 Score=75.85 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=62.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.+...|+.++..-|..|+.+++...=.||+||+|+|||....--+++ +.. .....+||.+|+..-+.|+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyh-l~~-------~~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYH-LAR-------QHAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHH-HHH-------hcCCceEEEcccchhHHHHHHH
Confidence 45556888999999999999999999999999999999976444444 433 2466799999999999999988
Q ss_pred HHHhC
Q 016712 193 FHESA 197 (384)
Q Consensus 193 ~~~~~ 197 (384)
+.+.+
T Consensus 474 Ih~tg 478 (935)
T KOG1802|consen 474 IHKTG 478 (935)
T ss_pred HHhcC
Confidence 88754
No 173
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.93 E-value=7.4e-05 Score=74.40 Aligned_cols=65 Identities=26% Similarity=0.297 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.+.+-|..|+......++ .++.||+|+|||..-..-+.+.+. .+.++||..||.+-+.-+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk---------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK---------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH---------cCCeEEEEcCchHHHHHHHHHhc
Confidence 577889999998887755 688999999999976555555553 37899999999999988887644
No 174
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.85 E-value=8.1e-05 Score=75.09 Aligned_cols=157 Identities=22% Similarity=0.258 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++-.||...++.+. +|-|-|+.-..|-|||.-. +.++.++.+...- -|| -||++|.-.|- -|..++.++
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nI----wGP-FLVVtpaStL~-NWaqEisrF 639 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNI----WGP-FLVVTPASTLH-NWAQEISRF 639 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccC----CCc-eEEeehHHHHh-HHHHHHHHh
Confidence 46678888776543 5778999999999999854 5666666543221 133 68889987764 488999999
Q ss_pred CCCCceEEEECCCChHHHHHHH---------hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHH
Q 016712 197 APSLDTICVYGGTPISHQMRAL---------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVE 267 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~---------~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~ 267 (384)
.|.+++.-+.|+.......+.. ..+.||+|++...+..-- ..+.--.+.++|+|||+.+-.. ....++
T Consensus 640 lP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe--ky~qkvKWQYMILDEAQAIKSS-sS~RWK 716 (1185)
T KOG0388|consen 640 LPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE--KYLQKVKWQYMILDEAQAIKSS-SSSRWK 716 (1185)
T ss_pred CccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH--HHHHhhhhhheehhHHHHhhhh-hhhHHH
Confidence 9999998888987766555542 235799999976553211 1111224679999999987654 344455
Q ss_pred HHHHHCCCCCcEEEEEccCChh
Q 016712 268 VILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.++.. +.+-.+++|.|+...
T Consensus 717 tLLsF--~cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 717 TLLSF--KCRNRLLLTGTPIQN 736 (1185)
T ss_pred HHhhh--hccceeeecCCccch
Confidence 56554 245578999998765
No 175
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.81 E-value=0.00052 Score=61.46 Aligned_cols=149 Identities=19% Similarity=0.320 Sum_probs=93.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ---GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
.|.....|..++=+++ .++ -.++.|.+....+.+ |+|.+.+.-.|.|||-+ ++|++..+.. +....+
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-------dg~~Lv 73 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-------DGSRLV 73 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------CCCcEE
Confidence 3555555666665554 366 489999999988875 57999999999999986 5888877765 223455
Q ss_pred EEEecCHHHHHHHHHHHHHhCCCC---ceEE--EECCCChH-H---HH----HHHhcCCCEEEECchhHHHHHHcc----
Q 016712 177 LVLAPTRELAKQVEKEFHESAPSL---DTIC--VYGGTPIS-H---QM----RALDYGVDAVVGTPGRVIDLIKRN---- 239 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~~~---~~~~--~~g~~~~~-~---~~----~~~~~~~~IlV~Tp~~l~~~l~~~---- 239 (384)
.+++| ++|..|....+...+.++ ++.. +....... . .. +.....-.|+++||+.++++...+
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 56666 568899988888755322 2221 22222211 1 11 122234689999999887654221
Q ss_pred ---CC-----------CCCCccEEEEeCcccccC
Q 016712 240 ---AL-----------NLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 240 ---~~-----------~~~~l~~vViDEah~~~~ 259 (384)
.. ++.+-..=|+||+|..+.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 123344457888887654
No 176
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=4.9e-05 Score=80.47 Aligned_cols=126 Identities=23% Similarity=0.279 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
.+++.|.-.=-.+..| -|..+.||-|||+++.+|++-..+. |.-|-|++.+--||..=.+.+..++.
T Consensus 169 ~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~RDaewmgply~fL 237 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAKRDSEWMGPLYEFH 237 (1112)
T ss_pred cccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhhccHHHHHHHHHHh
Confidence 3667776554444444 4899999999999999998766644 56688899999999855555555432
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
++.+.|..... .....+.....+||.+||...| .++|+.+. .....+.+.||||+|.++
T Consensus 238 GLsvg~i~~~~-~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 238 GLSVDCIDKHQ-PNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCceeecCCCC-CCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 56777665422 2233344556789999998766 33443321 124568899999999875
No 177
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.76 E-value=0.0007 Score=73.12 Aligned_cols=127 Identities=18% Similarity=0.111 Sum_probs=78.6
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
+.|+ .+++-|.+++..++.+++ +++.|+.|+|||.+ +-.+...+. ..|.+++.++||-.-+..+.+.
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e--------~~G~~V~~~ApTGkAA~~L~e~-- 409 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE--------AAGYEVRGAALSGIAAENLEGG-- 409 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH--------HcCCeEEEecCcHHHHHHHhhc--
Confidence 3466 599999999999998664 78999999999985 334444332 2367899999998766544321
Q ss_pred HhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-
Q 016712 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL- 273 (384)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l- 273 (384)
. ++. -.|..++......+...+...++|||||+-.+... .+..+++..
T Consensus 410 --t-Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~ 458 (988)
T PRK13889 410 --S-GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAA 458 (988)
T ss_pred --c-Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhh
Confidence 0 111 01222221111122233566789999999965433 445566543
Q ss_pred CCCCcEEEEEcc
Q 016712 274 PQNRQSMMFSAT 285 (384)
Q Consensus 274 ~~~~q~l~~SAT 285 (384)
+..+++|++-=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 456777776544
No 178
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.75 E-value=0.00024 Score=66.99 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=86.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
.|+..-.-.|..|+..++... =+.+.|+.|+|||+.++.+.+...... ....+++|--|+..+.+++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG~dIG---- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVGEDIG---- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCcccccC----
Confidence 378767778899999988764 367789999999999999999888763 23456888888877665431
Q ss_pred HhCCCCc---eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCC----------ccEEEEeCcccccCCC
Q 016712 195 ESAPSLD---TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSE----------VQFVVLDEADQMLSVG 261 (384)
Q Consensus 195 ~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~----------l~~vViDEah~~~~~~ 261 (384)
+.|+.. ..-+.+ ...+..+.+.+.. =++-+.+...+....+.+.. =.+||||||+.+
T Consensus 294 -fLPG~eEeKm~PWmq--~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---- 363 (436)
T COG1875 294 -FLPGTEEEKMGPWMQ--AIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---- 363 (436)
T ss_pred -cCCCchhhhccchHH--HHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----
Confidence 001000 000000 0000111111100 01122333333333332211 148999999987
Q ss_pred hHHHHHHHHHHCCCCCcEEEEE
Q 016712 262 FAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 262 ~~~~~~~il~~l~~~~q~l~~S 283 (384)
-..+++.|+.+..+...++++.
T Consensus 364 TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcC
Confidence 4568899999998888887753
No 179
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.75 E-value=0.00032 Score=72.68 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=55.4
Q ss_pred CCCCCcHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHHHHhhhh----------c-------cC-------
Q 016712 118 GISKLFPIQKAVLEPAMQ----GRDMIGRARTGTGKTLAFGIPILDKIIKFNE----------K-------HG------- 169 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~----------~-------~~------- 169 (384)
+...|++.|...+..++. ..+.++.+|||+|||++-+-..+........ + .+
T Consensus 18 fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s 97 (945)
T KOG1132|consen 18 FPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKS 97 (945)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCch
Confidence 345799999988777664 4689999999999999876665554432220 0 00
Q ss_pred ---C------CCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 170 ---R------GRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 170 ---~------~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
. ...+++.|-+-|..-..|+.+++++..
T Consensus 98 ~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 98 EEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 014567777778888889998888743
No 180
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00035 Score=68.57 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=120.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccC-CCch--hHHHHHHHHHHHHhhhh-------c---------------cCCCCCCE
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRART-GTGK--TLAFGIPILDKIIKFNE-------K---------------HGRGRNPL 175 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~T-GsGK--T~~~~lp~l~~l~~~~~-------~---------------~~~~~~~~ 175 (384)
.+|+.|.+.+..+.+-+|++..-.| +.|+ +-.|++-+++++.+... + ......|+
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 5899999999999999998765433 3454 55688999998864221 1 01124789
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCCCce---E------------------------------EEECCCChH---------H
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPSLDT---I------------------------------CVYGGTPIS---------H 213 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~~~~---~------------------------------~~~g~~~~~---------~ 213 (384)
|||+||+|+-|..+.+.+..+..+..- . ++.|.+... .
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 999999999999999988876322110 0 011111100 0
Q ss_pred HHHHH--hcCCCEEEECchhHHHHHHcc------CCCCCCccEEEEeCcccccCCChHHHHHHHHHHC---CCC------
Q 016712 214 QMRAL--DYGVDAVVGTPGRVIDLIKRN------ALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL---PQN------ 276 (384)
Q Consensus 214 ~~~~~--~~~~~IlV~Tp~~l~~~l~~~------~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l---~~~------ 276 (384)
..... ....||+||+|--|..++... .-.++.+.++|||.+|.|+..+ ...+..|+..| |..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 01111 125899999999987777532 2246788999999999888764 34555665554 221
Q ss_pred ---------------CcEEEEEccCChhHHHHHHHhcCCC
Q 016712 277 ---------------RQSMMFSATMPPWIRSLTNKYLKNP 301 (384)
Q Consensus 277 ---------------~q~l~~SAT~~~~~~~~~~~~l~~~ 301 (384)
+|+++||+--.+....+...++.++
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~ 494 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNM 494 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 4899999998888888888887765
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=97.74 E-value=0.00011 Score=54.36 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=39.9
Q ss_pred HHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 129 VLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 129 ~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
++...+.+.+ +++.||+|+|||...+-.+...+... ... +.+++|++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3442333444 55699999999976544444333110 112 678999999999999998888
No 182
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.72 E-value=0.00077 Score=71.45 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=78.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 107 SQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
++..+...-..++ .+++-|.+|+..+..+ +-+++.|+.|+|||... -.+...+. ..+..+++++||---
T Consensus 339 ~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~--------~~g~~V~~~ApTg~A 408 (744)
T TIGR02768 339 SPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWE--------AAGYRVIGAALSGKA 408 (744)
T ss_pred CHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHH--------hCCCeEEEEeCcHHH
Confidence 3433333333444 5899999999998874 56799999999999753 33333332 236789999999877
Q ss_pred HHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHH
Q 016712 186 AKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAED 265 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~ 265 (384)
+..+.+. . ++.. .|-.++...+..+...+...++|||||+-.+... .
T Consensus 409 a~~L~~~----~-g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~ 455 (744)
T TIGR02768 409 AEGLQAE----S-GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----Q 455 (744)
T ss_pred HHHHHhc----c-CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----H
Confidence 6654321 1 1111 1111121111222233567889999999965433 3
Q ss_pred HHHHHHHC-CCCCcEEEEE
Q 016712 266 VEVILERL-PQNRQSMMFS 283 (384)
Q Consensus 266 ~~~il~~l-~~~~q~l~~S 283 (384)
+..+++.. ....++|++-
T Consensus 456 ~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 456 MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 34455532 3466666664
No 183
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.66 E-value=0.00013 Score=66.42 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=69.8
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCC-ChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGT-PISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~-~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
...|.+|||+..-.-|-++.+.++.+- .+..+.-+++.. ...++...+.. .++|.||||+|+..++..+.+.++++.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 457899999999999999999999874 345555556554 55666666764 589999999999999999999999999
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||||--|
T Consensus 204 ~ivlD~s~ 211 (252)
T PF14617_consen 204 RIVLDWSY 211 (252)
T ss_pred EEEEcCCc
Confidence 99999755
No 184
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.63 E-value=0.00026 Score=73.12 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=79.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH-------H-HHhCCCCceEEEECCC
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE-------F-HESAPSLDTICVYGGT 209 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~-------~-~~~~~~~~~~~~~g~~ 209 (384)
++=|.+.||+|||.+|+..++..=.. -.-.+-+|+|||.+.-.-+... | +..+.+.+.-.+.-..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~-------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK-------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH-------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 68889999999999998887654322 1234689999998876543322 2 3333333333332221
Q ss_pred ChHHHHHHHhcCCCEEEECchhHHHH------HHccCCCCCC--------------c-cEEEEeCcccccCC-ChHHHHH
Q 016712 210 PISHQMRALDYGVDAVVGTPGRVIDL------IKRNALNLSE--------------V-QFVVLDEADQMLSV-GFAEDVE 267 (384)
Q Consensus 210 ~~~~~~~~~~~~~~IlV~Tp~~l~~~------l~~~~~~~~~--------------l-~~vViDEah~~~~~-~~~~~~~ 267 (384)
......-....++.|++.|-..+..- +.+......+ + -.|||||=|+|... -+...
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~-- 226 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGA-- 226 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHH--
Confidence 11222222233577888776554322 1111111111 1 26999999998763 12222
Q ss_pred HHHHHCCCCCcEEEEEccCChhHH
Q 016712 268 VILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 268 ~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
+..+. ..-++=++||+++...
T Consensus 227 --i~~l~-pl~ilRfgATfkd~y~ 247 (985)
T COG3587 227 --IKQLN-PLLILRFGATFKDEYN 247 (985)
T ss_pred --HHhhC-ceEEEEecccchhhhc
Confidence 22332 2337778999988755
No 185
>PRK06526 transposase; Provisional
Probab=97.63 E-value=0.0006 Score=62.77 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=66.6
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
..+.++++.||+|+|||..+.--..... . .|..++++. ..+|+.++..... .
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~-~--------~g~~v~f~t-~~~l~~~l~~~~~------------~------ 147 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC-Q--------AGHRVLFAT-AAQWVARLAAAHH------------A------ 147 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH-H--------CCCchhhhh-HHHHHHHHHHHHh------------c------
Confidence 3568999999999999986543333222 2 244555543 3344444321100 0
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
++.. ..+. .+.+.++|||||+|....... ...+..++.....+..+|+.|...+....+
T Consensus 148 -------------~~~~---~~l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 148 -------------GRLQ---AELV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGE 207 (254)
T ss_pred -------------CcHH---HHHH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHH
Confidence 1111 1111 134578999999997643322 223445554332334577777776554222
Q ss_pred ----------HHHHhcCCCeEEEecCC
Q 016712 293 ----------LTNKYLKNPLTVDLVGD 309 (384)
Q Consensus 293 ----------~~~~~l~~~~~i~~~~~ 309 (384)
++.+.+.....|.+.++
T Consensus 208 ~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 208 VFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred HcCChHHHHHHHHHHhcCceEEeecCC
Confidence 23444455556665543
No 186
>PRK08181 transposase; Validated
Probab=97.62 E-value=0.0023 Score=59.30 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=59.9
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
+..+.++++.||+|+|||..+. .+...+.. .|..++|+. ..+|+.++......
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--------~g~~v~f~~-~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA-AIGLALIE--------NGWRVLFTR-TTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH-HHHHHHHH--------cCCceeeee-HHHHHHHHHHHHhC-----------------
Confidence 3467899999999999998543 33333322 244565554 45666654322110
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.+.+.+... +.+.++|||||.+....... ...+..++...-.+..+|+.|-..+..
T Consensus 156 --------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 --------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred --------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 011111121 34678999999997654332 234555555433345566655554443
No 187
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.54 E-value=0.00016 Score=75.58 Aligned_cols=152 Identities=18% Similarity=0.294 Sum_probs=99.3
Q ss_pred CCcHHHHHHHHHHh---CC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM---QG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~---~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++.+||...+..+. ++ -|-|+.-.+|-|||.. .+..+..+.+.... .|| -|||||+-.|.+ |..+|..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~----~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM----QGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc----CCC-eEEeccccccCC-chhhcccc
Confidence 78999999887654 33 3678899999999985 46666666654322 244 689999999887 78889999
Q ss_pred CCCCceEEEECCCChHHHH--HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 197 APSLDTICVYGGTPISHQM--RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
.|.+..+.+.|........ .......+|+++|.+.+.. ....+.--++.++||||-|+|-.. ..++-..+.
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa-----~~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA-----ICKLTDTLN 539 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch-----hhHHHHHhh
Confidence 9888776666653322211 1122348999999876643 111222235779999999997653 222322222
Q ss_pred ---CCCcEEEEEccC
Q 016712 275 ---QNRQSMMFSATM 286 (384)
Q Consensus 275 ---~~~q~l~~SAT~ 286 (384)
.....+++|.|+
T Consensus 540 t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTP 554 (1157)
T ss_pred ccccchhhhhhcCCh
Confidence 234466777886
No 188
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00059 Score=73.85 Aligned_cols=158 Identities=21% Similarity=0.192 Sum_probs=101.5
Q ss_pred CCCcHHHHHHHHHHh-----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
..+.++|.+.++.+. .+.+.++..+.|.|||+-.+.-+.. +.... ....+.+++++|+ +++.+|.+++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~----~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESI----KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcc----cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 467889999887654 2568889999999999865444333 21110 1113568999998 46677899999
Q ss_pred HhCCCCc-eEEEECCCCh----HHHHHHHhc-C----CCEEEECchhHHHHH-HccCCCCCCccEEEEeCcccccCCChH
Q 016712 195 ESAPSLD-TICVYGGTPI----SHQMRALDY-G----VDAVVGTPGRVIDLI-KRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 195 ~~~~~~~-~~~~~g~~~~----~~~~~~~~~-~----~~IlV~Tp~~l~~~l-~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
++.+.+. +...+|.... .+....+.. . .+++++|.+.+.... ....+.-..++.+|+||+|.+-+.. .
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8888888 7777877652 333333332 2 699999998886632 1123334568899999999965542 2
Q ss_pred HHHHHHHHHCCCCCcEEEEEccC
Q 016712 264 EDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
.....+. .+.... .+.+|.||
T Consensus 490 ~~~~~l~-~~~~~~-~~~LtgTP 510 (866)
T COG0553 490 SEGKALQ-FLKALN-RLDLTGTP 510 (866)
T ss_pred HHHHHHH-HHhhcc-eeeCCCCh
Confidence 2222222 333333 37788887
No 189
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.49 E-value=0.0026 Score=69.30 Aligned_cols=138 Identities=20% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 105 DISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
++++..+......++ .+++-|.+++..+.. ++-.++.|+.|+|||.+ +-++...+. ..|.+++.++||-
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e--------~~G~~V~g~ApTg 435 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE--------AAGYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH--------HcCCeEEEEcCcH
Confidence 345555655555555 599999999998864 45689999999999984 344444432 2477899999998
Q ss_pred HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 184 ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 184 ~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
.-+..+.+. . ++.. .|-.+++.....+...+..-++|||||+-.+..
T Consensus 436 kAA~~L~e~----~-Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~---- 482 (1102)
T PRK13826 436 KAAEGLEKE----A-GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS---- 482 (1102)
T ss_pred HHHHHHHHh----h-CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----
Confidence 776554321 1 1221 121111111111223455677999999996533
Q ss_pred HHHHHHHHHCC-CCCcEEEEEcc
Q 016712 264 EDVEVILERLP-QNRQSMMFSAT 285 (384)
Q Consensus 264 ~~~~~il~~l~-~~~q~l~~SAT 285 (384)
..+..+++..+ ..+++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 34555666654 46777777544
No 190
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.0021 Score=52.75 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999743
No 191
>PRK04296 thymidine kinase; Provisional
Probab=97.46 E-value=0.00041 Score=61.03 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=24.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
.=.++.||+|+|||...+--+ .+.. ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~-~~~~--------~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRA-YNYE--------ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHH-HHHH--------HcCCeEEEEec
Confidence 346889999999998654333 3332 23667888866
No 192
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.44 E-value=0.00063 Score=66.16 Aligned_cols=121 Identities=19% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHH------hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH--HHH
Q 016712 121 KLFPIQKAVLEPA------MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV--EKE 192 (384)
Q Consensus 121 ~~~~~Q~~~i~~i------~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~--~~~ 192 (384)
++++-|+.++..+ ..+.++.+.|+-|+|||.. +-.+..... ..+..+++++||-.-|.-+ -.+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-------~~~~~~~~~a~tg~AA~~i~~G~T 71 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-------SRGKKVLVTAPTGIAAFNIPGGRT 71 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-------cccceEEEecchHHHHHhccCCcc
Confidence 3678899998888 6788999999999999984 333332222 2456788999987766655 344
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
+..++ ++++... . .... .+.+. ......+.++++|||||+-.+... ....+...++.
T Consensus 72 ~hs~f-~i~~~~~--~-------------~~~~--~~~~~----~~~~~~l~~~~~lIiDEism~~~~-~l~~i~~~lr~ 128 (364)
T PF05970_consen 72 IHSFF-GIPINNN--E-------------KSQC--KISKN----SRLRERLRKADVLIIDEISMVSAD-MLDAIDRRLRD 128 (364)
T ss_pred hHHhc-Ccccccc--c-------------cccc--ccccc----chhhhhhhhheeeecccccchhHH-HHHHHHHhhhh
Confidence 44444 1221100 0 0000 11110 111224678899999999866554 34444444554
Q ss_pred C
Q 016712 273 L 273 (384)
Q Consensus 273 l 273 (384)
+
T Consensus 129 i 129 (364)
T PF05970_consen 129 I 129 (364)
T ss_pred h
Confidence 3
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.37 E-value=0.0006 Score=64.34 Aligned_cols=123 Identities=18% Similarity=0.100 Sum_probs=74.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~ 201 (384)
+++-|.+++.. ...+++|.|..|||||.+.+--+...+.... ....++|++++|+..+.++..++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999987 6689999999999999987655555553321 2345699999999999999999888542110
Q ss_pred eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCC--CCccEEEEeCcc
Q 016712 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNL--SEVQFVVLDEAD 255 (384)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~--~~l~~vViDEah 255 (384)
. . ................+.|+|-..+...+....... -.-.+-++|+..
T Consensus 74 ~---~-~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 Q---E-SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp H---C-CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c---c-ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 0 000001112222345789999887766553321111 122456677666
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=97.36 E-value=0.0036 Score=59.92 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=75.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC---HHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT---RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt---~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
.-++++|++|+|||....--+ ..+.. .+.+++++... ..-..|+......++ +++.....+.....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~lg--v~v~~~~~g~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERLG--VKVIKHKYGADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHcC--CceecccCCCCHHH
Confidence 357889999999998543222 22322 34567666543 233345444444433 33222111111111
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
. +.+.+... ...+.++|+||.+.++.. ..+..++..+.+.+.++.-+++++||......+
T Consensus 210 v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 210 V-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred H-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 0 11111111 123567999999998763 346677788877777788899999998777666
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
.+..|.
T Consensus 271 ~a~~f~ 276 (336)
T PRK14974 271 QAREFN 276 (336)
T ss_pred HHHHHH
Confidence 666664
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.28 E-value=0.0025 Score=66.89 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 104 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
..+.|.+... -+..++..|++|+-.++..+| .+|.|=+|+|||..... +++.+. ..|+++|..+-|
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~--------~~gkkVLLtsyT 722 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILV--------ALGKKVLLTSYT 722 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHH--------HcCCeEEEEehh
Confidence 3455555553 223689999999999887765 78889999999985432 223332 247889999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------ceEEEECCCC--hHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 183 RELAKQVEKEFHESAPSL-------------DTICVYGGTP--ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 183 ~~La~q~~~~~~~~~~~~-------------~~~~~~g~~~--~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
..-+.-+.-.++...-.+ +-.+...+.+ .-...+...+.+.||.+|--.+.+.+.. .+.++
T Consensus 723 hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~----~R~FD 798 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV----NRQFD 798 (1100)
T ss_pred hHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh----ccccC
Confidence 888777777766543110 0001111111 1122233344588999996555554432 34689
Q ss_pred EEEEeCcccccC
Q 016712 248 FVVLDEADQMLS 259 (384)
Q Consensus 248 ~vViDEah~~~~ 259 (384)
+.|||||-.+..
T Consensus 799 ~cIiDEASQI~l 810 (1100)
T KOG1805|consen 799 YCIIDEASQILL 810 (1100)
T ss_pred EEEEcccccccc
Confidence 999999998754
No 196
>PRK08116 hypothetical protein; Validated
Probab=97.28 E-value=0.0063 Score=56.54 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=58.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
.+++.|++|+|||..+ .++.+.+.. .+..++++ +..++..++...+.... ..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~--------~~~~v~~~-~~~~ll~~i~~~~~~~~----------~~-------- 167 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIE--------KGVPVIFV-NFPQLLNRIKSTYKSSG----------KE-------- 167 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHH--------cCCeEEEE-EHHHHHHHHHHHHhccc----------cc--------
Confidence 4999999999999865 455555543 13445544 45556555444332110 00
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc--ccCCChHHHHHHHHHHC-CCCCcEEEEEccCChhH
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ--MLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~--~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~ 290 (384)
+...+... +.+.++|||||++. ..++ ....+..++... ....++|+.|-..|..+
T Consensus 168 ----------~~~~~~~~-------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 168 ----------DENEIIRS-------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred ----------cHHHHHHH-------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 00111111 34678999999964 3333 334455555543 34566777666555443
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.27 E-value=0.00081 Score=54.87 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=12.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
+++.+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3467899999999999864
No 198
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.16 E-value=0.015 Score=55.65 Aligned_cols=128 Identities=14% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.+.++++.|+||+|||... .++...+.. .+..|+++. ..+|..++.... +. .... ...
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--------~g~~V~y~t-~~~l~~~l~~~~---~~--------~~~~-~~~ 239 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--------RGKSVIYRT-ADELIEILREIR---FN--------NDKE-LEE 239 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--------CCCeEEEEE-HHHHHHHHHHHH---hc--------cchh-HHH
Confidence 3578999999999999854 344444433 255566654 455555443210 00 0000 000
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHHC-CCCCcEEEEEccCChhHHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILERL-PQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~ 292 (384)
... .+.++++||||+.+......| ...+..++... ....++|+.|--.|.....
T Consensus 240 -----------------~~~-------~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 240 -----------------VYD-------LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLK 295 (329)
T ss_pred -----------------HHH-------HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 001 134678999999987654333 33455555543 3345566655544444322
Q ss_pred -----HHHHhcCCCeEEEecC
Q 016712 293 -----LTNKYLKNPLTVDLVG 308 (384)
Q Consensus 293 -----~~~~~l~~~~~i~~~~ 308 (384)
+..+.......|.+.+
T Consensus 296 ~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 296 TYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred HHhHHHHHHHHcCCEEEEecC
Confidence 3334444445555543
No 199
>PHA02533 17 large terminase protein; Provisional
Probab=97.15 E-value=0.0042 Score=63.21 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.+.|+|...+..+..++-.++..+=..|||.+....++..... ..+.++++++|+..-|..+++.++......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5899999999887666667888888999999876444433332 235689999999999999998887654322
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC--CCc
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQ 278 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~--~~q 278 (384)
+...-.+-.......-.+.+|..|.+.|-+. +...=.+..++|+||+|.+.+ +...+..+...+.. ..+
T Consensus 132 P~l~~~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r 202 (534)
T PHA02533 132 PDFLQPGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSK 202 (534)
T ss_pred HHHhhcceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCce
Confidence 2100000000001111123455665544221 111223567899999997654 33333334333332 234
Q ss_pred EEEEEccCC
Q 016712 279 SMMFSATMP 287 (384)
Q Consensus 279 ~l~~SAT~~ 287 (384)
++.+| |++
T Consensus 203 ~iiiS-Tp~ 210 (534)
T PHA02533 203 IIITS-TPN 210 (534)
T ss_pred EEEEE-CCC
Confidence 44444 444
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.017 Score=56.37 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=70.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+.++++||||+|||.+..--+....... ...+..+.++.- .+.-+.++.+.+.+.. ++++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-gvpv~~~--------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIM-GIPVKAI--------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcC-CcceEee---------
Confidence 4689999999999987533222211110 012344555443 3344444444444432 2332211
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCC-CcEEEEEccCChh-HH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQN-RQSMMFSATMPPW-IR 291 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~-~q~l~~SAT~~~~-~~ 291 (384)
-++..+...+.. +.+.++|+||++.+..... ....+..++...... --++++|||.... +.
T Consensus 240 ------------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 240 ------------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ------------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 123333333322 3578999999999876331 234555666655433 4578899998644 45
Q ss_pred HHHHHh
Q 016712 292 SLTNKY 297 (384)
Q Consensus 292 ~~~~~~ 297 (384)
+....|
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 566666
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.01 Score=57.46 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC--HHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT--RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt--~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
|..++++||||+|||....--+...+.. ....++.+++-. +.-+.++.+.+.+.. ++++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-------~G~~~V~lit~D~~R~ga~EqL~~~a~~~-gv~~~~--------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-------FGASKVALLTTDSYRIGGHEQLRIFGKIL-GVPVHA--------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEecccccccHHHHHHHHHHHc-CCceEe---------
Confidence 4679999999999999754333322211 111344444422 222344444444443 233322
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCChhH-H
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWI-R 291 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~~~-~ 291 (384)
+-+++.+...+. .+.+.++|+||++-+..... ....+..+.....+...++++|||..... .
T Consensus 200 ------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 200 ------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 223333333332 23456889999987543221 22223222222222344888899986554 4
Q ss_pred HHHHHhc
Q 016712 292 SLTNKYL 298 (384)
Q Consensus 292 ~~~~~~l 298 (384)
+.+..|.
T Consensus 264 evi~~f~ 270 (374)
T PRK14722 264 EVVQAYR 270 (374)
T ss_pred HHHHHHH
Confidence 4555553
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.0017 Score=52.81 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999854
No 203
>PRK05642 DNA replication initiation factor; Validated
Probab=97.06 E-value=0.0029 Score=57.61 Aligned_cols=45 Identities=20% Similarity=0.438 Sum_probs=28.6
Q ss_pred CCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+.+++|||++|.+... .+...+..++..+..+...++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35678999999977543 3455667777665543344566666544
No 204
>PRK06893 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0025 Score=57.81 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCccEEEEeCcccccCC-ChHHHHHHHHHHCCC-CCcEEEEEccCChh
Q 016712 244 SEVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPPW 289 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~-~~q~l~~SAT~~~~ 289 (384)
.+.+++||||+|.+... .+...+..++..+.. +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46789999999987633 234455555555433 45677888876554
No 205
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.013 Score=53.54 Aligned_cols=107 Identities=18% Similarity=0.312 Sum_probs=59.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.|++|+|||..+ ..+...+.. .+..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~--------~g~~v~~i-t~~~l~~~l~~~~~~-----------~~-------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLL--------RGKSVLII-TVADIMSAMKDTFSN-----------SE-------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEE-EHHHHHHHHHHHHhh-----------cc--------
Confidence 47899999999999854 344444432 24556665 444444433332210 00
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH-HHHHHHHH-CCCCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE-DVEVILER-LPQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~-~~~~il~~-l~~~~q~l~~SAT~~~~ 289 (384)
.+.+.+.+. +.++++|||||++......+.. .+..|+.. ......+++.|---+..
T Consensus 151 ----------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 151 ----------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred ----------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 011122221 4578899999999876544443 34445553 33456677766554443
No 206
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.02 E-value=0.0063 Score=60.04 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+-......+..+..++++++.||+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 45556667777888999999999999999865
No 207
>PRK08727 hypothetical protein; Validated
Probab=97.02 E-value=0.0059 Score=55.54 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChhH
Q 016712 244 SEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~~ 290 (384)
.+.++|||||+|.+.... ....+-.++.... ...++|+.|-..|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456789999999876543 2233334444432 2345555555444443
No 208
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.018 Score=53.44 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
.+.++++.|++|+|||... .++...+.. ..+..++|+. ..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~-------~~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMR-------KKGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhh-------hcCceEEEEE-HHHHHHHH
Confidence 3578999999999999854 444454432 1145566665 34454443
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.021 Score=55.41 Aligned_cols=129 Identities=12% Similarity=0.224 Sum_probs=69.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHH-HHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRE-LAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~-La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
+.++++||||+|||.....-+.. +. ..+.++.++.- .+. -+.|+. .+.+.. +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~--------~~GkkVglI~aDt~RiaAvEQLk-~yae~l-g-------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FH--------GKKKTVGFITTDHSRIGTVQQLQ-DYVKTI-G-------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HH--------HcCCcEEEEecCCcchHHHHHHH-HHhhhc-C--------------
Confidence 46789999999999865433332 21 12445555554 222 233332 222211 1
Q ss_pred HHHHHhcCCCEE-EECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCCh-hH
Q 016712 214 QMRALDYGVDAV-VGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPP-WI 290 (384)
Q Consensus 214 ~~~~~~~~~~Il-V~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~-~~ 290 (384)
+.++ +.+|..+.+.+..-. .-.+.++|+||-+=+.... ..-.++..+++...++.-++.+|||... ..
T Consensus 297 --------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 297 --------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred --------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2222 335555555443211 0125789999988765433 1344455555555555557779998654 45
Q ss_pred HHHHHHhcC
Q 016712 291 RSLTNKYLK 299 (384)
Q Consensus 291 ~~~~~~~l~ 299 (384)
.+.+..|-.
T Consensus 368 ~~i~~~F~~ 376 (436)
T PRK11889 368 IEIITNFKD 376 (436)
T ss_pred HHHHHHhcC
Confidence 677776643
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.98 E-value=0.0055 Score=54.14 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=69.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
++++||||+|||....=-+. ++.. . +.++.+++- .|.=+.++.+.+.+.. ++++.......+..+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa-~~~~-------~-~~~v~lis~D~~R~ga~eQL~~~a~~l-~vp~~~~~~~~~~~~~-- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA-RLKL-------K-GKKVALISADTYRIGAVEQLKTYAEIL-GVPFYVARTESDPAEI-- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHHH-------T-T--EEEEEESTSSTHHHHHHHHHHHHH-TEEEEESSTTSCHHHH--
T ss_pred EEEECCCCCchHhHHHHHHH-HHhh-------c-cccceeecCCCCCccHHHHHHHHHHHh-ccccchhhcchhhHHH--
Confidence 68899999999986432222 2221 1 444555553 4555555555555544 2332221111111111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+...+.. ...++.++|+||-+-+.... ....++..+++.+.+..-.+++|||...+....+.
T Consensus 72 ---------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 ---------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ---------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ---------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1111111 11235778899987654322 24567777777776667788999999877655555
Q ss_pred Hhc
Q 016712 296 KYL 298 (384)
Q Consensus 296 ~~l 298 (384)
.+.
T Consensus 135 ~~~ 137 (196)
T PF00448_consen 135 AFY 137 (196)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 211
>PRK12377 putative replication protein; Provisional
Probab=96.93 E-value=0.02 Score=52.53 Aligned_cols=102 Identities=16% Similarity=0.308 Sum_probs=56.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
.++++.|++|+|||..+ .++...+.. .+..+ +.++..+|..++...+.. +.
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~~~~------------~~------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLA--------KGRSV-IVVTVPDVMSRLHESYDN------------GQ------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCe-EEEEHHHHHHHHHHHHhc------------cc-------
Confidence 57999999999999854 444444432 24444 444556776665544321 00
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh-HHHHHHHHHH-CCCCCcEEEEEcc
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF-AEDVEVILER-LPQNRQSMMFSAT 285 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~-~~~~~~il~~-l~~~~q~l~~SAT 285 (384)
+...++. .+.++++|||||++......+ ...+..++.. .....++++.|-=
T Consensus 153 -----------~~~~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 153 -----------SGEKFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred -----------hHHHHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0001111 145789999999965433222 3334444443 3345667776543
No 212
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.88 E-value=0.0077 Score=54.17 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=25.6
Q ss_pred CccEEEEeCcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
..++|||||+|.+.... ....+..++..+......+++|++.++
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 34689999999876542 345555565554322224555666443
No 213
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.86 E-value=0.0052 Score=55.96 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=25.2
Q ss_pred ccEEEEeCcccccCC-ChHHHHHHHHHHCC-C-CCcEEEEEccCChh
Q 016712 246 VQFVVLDEADQMLSV-GFAEDVEVILERLP-Q-NRQSMMFSATMPPW 289 (384)
Q Consensus 246 l~~vViDEah~~~~~-~~~~~~~~il~~l~-~-~~q~l~~SAT~~~~ 289 (384)
.++|+|||+|.+... .+...+..++..+. . +.++++ |++.|+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p~ 143 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPPR 143 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCChH
Confidence 478999999987643 24445555555542 2 235555 5554443
No 214
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.84 E-value=0.0035 Score=65.61 Aligned_cols=127 Identities=22% Similarity=0.284 Sum_probs=86.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|. .++..|.-.- +.-...-+..+.||-|||+++.+|+.-..+ .|..+.+++-.--||.--.+.+..++
T Consensus 78 g~-~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 78 GM-RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred CC-ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 55 3556665543 333345688999999999999999865543 36679999999999987777777765
Q ss_pred C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc
Q 016712 198 P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 198 ~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~ 258 (384)
. ++.+.+...+....+.. -...+||..+|-..| .+.+..+ ......+.+.|+||+|-++
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~--~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKR--AAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHcCCceeeccCCCChHHHH--HHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 4 45666666666444433 344589999998766 2333222 1234468899999999775
No 215
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.83 E-value=0.0037 Score=62.65 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.||+|+|||... -.+...+... ..+..++++. ..++..+....+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~------~~~~~v~yi~-~~~~~~~~~~~~~~~-------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK------NPNAKVVYVT-SEKFTNDFVNALRNN-------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEEE-HHHHHHHHHHHHHcC--------------------
Confidence 45899999999999854 3344444321 2245566664 345554443333210
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHC-CCCCcEEEEEccCChhH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWI 290 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l-~~~~q~l~~SAT~~~~~ 290 (384)
+.+.+... +.++++|||||+|.+.... ....+..++..+ ....++++.|...|..+
T Consensus 201 -----------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 201 -----------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred -----------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 00111121 2357799999999875532 223344444443 23455555444444443
No 216
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.077 Score=52.63 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC--HHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT--RELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt--~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
++.++++||||+|||....--+...... ..+.++.++.-. +.-+.++...+.+.. ++++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eqL~~~a~~~-~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQLKTYAKIM-GIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHHHHHHHHHh-CCceE----------
Confidence 4578999999999998654322222101 124456655532 222222233333222 12221
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHC-CCCCcEEEEEccCChh-H
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSATMPPW-I 290 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l-~~~~q~l~~SAT~~~~-~ 290 (384)
.+.++..+...+.. +.+.++|+||.+-+.... .....+..++... .+..-++++|||.... +
T Consensus 283 -----------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred -----------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH
Confidence 12334444444432 346789999988654322 1334555666522 2334488899998754 4
Q ss_pred HHHHHHhc
Q 016712 291 RSLTNKYL 298 (384)
Q Consensus 291 ~~~~~~~l 298 (384)
.+....|-
T Consensus 348 ~~~~~~f~ 355 (424)
T PRK05703 348 KDIYKHFS 355 (424)
T ss_pred HHHHHHhC
Confidence 45555553
No 217
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.78 E-value=0.014 Score=52.75 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=26.6
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCc-EEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-SMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q-~l~~SAT~~~ 288 (384)
+.++|||||+|.+... -...+..++.....+.. +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4668999999987543 33445555554433333 5777777654
No 218
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.78 E-value=0.013 Score=57.97 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=56.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.|++|+|||... ..+.+.+... ..+..++++.. ..+..+....+.. +
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~~-~~~~~~~~~~~~~---~----------------- 188 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVSS-EKFTNDFVNALRN---N----------------- 188 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEEH-HHHHHHHHHHHHc---C-----------------
Confidence 35789999999999854 4444444331 22456777753 3444433322221 0
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHC-CCCCcEEEEEccCChhHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~ 291 (384)
+.+.+...+ .+.++|||||+|.+.... ....+..++..+ ..+.++++.|...|....
T Consensus 189 -----------~~~~~~~~~-------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 189 -----------KMEEFKEKY-------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred -----------CHHHHHHHH-------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 111122222 246789999999876542 223344444443 335666554443444433
No 219
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.72 E-value=0.006 Score=54.92 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=60.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
-+++.|++|+|||-. +-++...+... .++.+++|+... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~~-~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSAE-EFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEHH-HHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecHH-HHHHHHHHHHHc----------------------
Confidence 489999999999983 33444444321 235567776543 344333333332
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChhH
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWI 290 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~~ 290 (384)
.....+.+. +...++++||++|.+.+.. ....+-.++..+. .+.++|+.|...|...
T Consensus 86 ---------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ---------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ---------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ---------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011111121 3468899999999876542 3445555555543 4567877777777654
No 220
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.007 Score=60.35 Aligned_cols=114 Identities=11% Similarity=0.208 Sum_probs=59.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.||+|+|||... -++.+.+... ..+.+++|+.. ..+..+....+..-
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~------~~~~~v~yi~~-~~f~~~~~~~~~~~-------------------- 182 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN------EPDLRVMYITS-EKFLNDLVDSMKEG-------------------- 182 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHhcc--------------------
Confidence 35899999999999854 3344444321 23456777764 33444333332210
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPWIRSLT 294 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~ 294 (384)
+.+.+...+. .+.++++|||+|.+.+.. ....+..++..+. ...++|+.|-..|..+..+.
T Consensus 183 -----------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 183 -----------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred -----------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHH
Confidence 0011111111 246789999999876542 2334444444432 34555555545555544443
Q ss_pred H
Q 016712 295 N 295 (384)
Q Consensus 295 ~ 295 (384)
.
T Consensus 246 ~ 246 (440)
T PRK14088 246 D 246 (440)
T ss_pred H
Confidence 3
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=96.72 E-value=0.034 Score=51.39 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=29.2
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
+..|.++++.||+|+|||..+..-..... ..|..++++. ..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~---------~~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV---------RAGIKVRFTT-AADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH---------HcCCeEEEEe-HHHHHHHH
Confidence 44678999999999999986543332222 1255566654 34554443
No 222
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.72 E-value=0.015 Score=55.74 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....++|||||+|.+... ....+..+++..+..+.+|+.+.
T Consensus 123 ~~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 123 SADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 345679999999987543 34455666666666666665443
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.72 E-value=0.022 Score=47.81 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=24.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+++.|++|+|||.....-+.... ..+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~---------~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA---------TKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH---------hcCCEEEEEECCcchH
Confidence 68899999999995433332221 1356677777655443
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.71 E-value=0.0038 Score=54.34 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=33.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+++.|++|+|||...+--+...+. .|..++|++. .+-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 689999999999965444444431 3566887764 466777777777664
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.64 E-value=0.012 Score=54.87 Aligned_cols=117 Identities=14% Similarity=0.261 Sum_probs=61.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccC---CCCCCEEEEEecCHHHHHHHHHHHHHh-CCCCceEEEECCCChH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG---RGRNPLCLVLAPTRELAKQVEKEFHES-APSLDTICVYGGTPIS 212 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~---~~~~~~~lvl~Pt~~La~q~~~~~~~~-~~~~~~~~~~g~~~~~ 212 (384)
.+++++|+||-|||.+. +++........ ...-|.+++-+|...-....|..+-.. +..++. .....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-----~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-----RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-----CCCHH
Confidence 38999999999999843 44433221111 112245666677766666666664443 211110 11111
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH--HHHHHHHHHCCC--CCcEEEE
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA--EDVEVILERLPQ--NRQSMMF 282 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~--~~~~~il~~l~~--~~q~l~~ 282 (384)
.. .. ...+++. --+++++||||+|.++..... ..+...++.+.+ ...+|++
T Consensus 132 ~~-~~-------------~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 132 KL-EQ-------------QVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HH-HH-------------HHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 10 00 0112332 236789999999998865432 334444555544 3445554
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.0082 Score=55.31 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=35.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
+++++++.||+|+|||..+ .++...+.. .+.-++.+++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---------~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK---------AGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH---------cCCeEEEEEHHHHHHHHHHHHhc
Confidence 6789999999999999965 344444433 23355667788888877666554
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.59 E-value=0.0068 Score=64.36 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+++-|.+++.. .+..++|.|..|||||.+..--+...+... .-...++|+|+-|+..|.++.+++.++.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999865 346899999999999997544444333211 11345699999999999999999988763
No 228
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.58 E-value=0.025 Score=59.44 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..+++-|++++-. ...+++|.|..|||||.+..--+...+... ...+.++|+++.|+..|..+.+++....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4699999999853 345789999999999997644443333221 1234579999999999999999988765
No 229
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.57 E-value=0.03 Score=47.60 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=75.2
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH-HHHHHHHHHhCCCCceEEEECC-----CChH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA-KQVEKEFHESAPSLDTICVYGG-----TPIS 212 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La-~q~~~~~~~~~~~~~~~~~~g~-----~~~~ 212 (384)
+.+-.++|.|||.+++--++..+ +.|.+++++-=.+.-. .--...++++ +++....+..+ ....
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~---------~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~ 74 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL---------GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDE 74 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChH
Confidence 45567779999999877777766 3477788843222110 0011234443 33332221111 0111
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
+...... ..+... ...+...+.++||+||+-..+..++ ..++..+++..+.+.-+|+.+-.+|+++
T Consensus 75 ~~~~~a~-----------~~~~~a-~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 75 EDIAAAA-----------EGWAFA-KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HHHHHHH-----------HHHHHH-HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 1111100 111111 1122345789999999998877664 4567778888788888888888888877
Q ss_pred HHHHH
Q 016712 291 RSLTN 295 (384)
Q Consensus 291 ~~~~~ 295 (384)
.+++.
T Consensus 143 ~e~AD 147 (159)
T cd00561 143 IEAAD 147 (159)
T ss_pred HHhCc
Confidence 76654
No 230
>PF13173 AAA_14: AAA domain
Probab=96.56 E-value=0.032 Score=45.48 Aligned_cols=38 Identities=8% Similarity=0.327 Sum_probs=27.2
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
.-.+|+|||+|.+.+ +...++.+.+.- ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998864 677777777754 46677765444
No 231
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.56 E-value=0.0067 Score=59.72 Aligned_cols=143 Identities=13% Similarity=0.230 Sum_probs=80.1
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH-HHHHHHHHHHHhCCCCceEE-EECCCChHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTIC-VYGGTPISHQMR 216 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~-La~q~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 216 (384)
.++.|..|||||.+..+-++..+... ..+.+++++-++.. |-.-++..+......++... +....... ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~i- 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-EI- 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-EE-
Confidence 57899999999999888777776552 14677999999887 55556666665433222111 11000000 00
Q ss_pred HHhc-CCCEEEECc-hhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCC--CCcEEEEEccCChhHHH
Q 016712 217 ALDY-GVDAVVGTP-GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQSMMFSATMPPWIRS 292 (384)
Q Consensus 217 ~~~~-~~~IlV~Tp-~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~--~~q~l~~SAT~~~~~~~ 292 (384)
.+.. |..|++..- +.... +. ....++++.+||+..+... .+..++.+++. ....+.+|.||+....-
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 0111 345555543 22211 11 1234689999999987433 44555555542 22357889998765444
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
+...|+
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 444554
No 232
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.0093 Score=63.71 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+.+++||||+|+|... -...+.++++..+.++.+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 56789999999998765 3345566666666677777655
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.16 Score=51.36 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=29.8
Q ss_pred CCCccEEEEeCcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCCh-hHHHHHHHhc
Q 016712 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPP-WIRSLTNKYL 298 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~-~~~~~~~~~l 298 (384)
+.+.++||||.+-...... ...++..+.. ......+++++++... .....++.|-
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHHHH
Confidence 3467899999987543221 1222333322 2234567888888753 3444555543
No 234
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.49 E-value=0.0078 Score=63.96 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++-|.+++.. ....++|.|..|||||.+..--+...+... .-...++|+|+-|+..|.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-----NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 589999999864 346899999999999997544444333211 1124569999999999999999998875
No 235
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.47 E-value=0.034 Score=59.27 Aligned_cols=84 Identities=6% Similarity=-0.047 Sum_probs=67.8
Q ss_pred CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh------hHHHHHH
Q 016712 222 VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP------WIRSLTN 295 (384)
Q Consensus 222 ~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~------~~~~~~~ 295 (384)
..|+++||..|..-+..+.+.+.++..|||||||++.+..-...+..+.+.-++..-+.+|||.|.. .+...++
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 5899999999998888999999999999999999998877677777788777777889999999874 3555555
Q ss_pred HhcCCCeEEE
Q 016712 296 KYLKNPLTVD 305 (384)
Q Consensus 296 ~~l~~~~~i~ 305 (384)
...-..+.+.
T Consensus 88 ~L~i~~v~l~ 97 (814)
T TIGR00596 88 NLFLRHVYLW 97 (814)
T ss_pred HhCcCeEEEe
Confidence 5444444443
No 236
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.45 E-value=0.045 Score=61.95 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
.+++-|.+|+..++.. +-++|.|..|+|||.+. -.++..+... ....+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l----~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML----PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH----hhccCceEEEEechHHHHHHHH
Confidence 6899999999999854 67899999999999863 2222222110 0123567889999988776653
No 237
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.45 E-value=0.025 Score=56.12 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=33.9
Q ss_pred ccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 246 VQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 246 l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.++||||.+-+.. +...-.++..+.....++.-++.++||......+.+..|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 3789999885433 2224445566666666666788888887766666666654
No 238
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.42 E-value=0.005 Score=57.03 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=34.2
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM 286 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~ 286 (384)
..+.++.+|+||||.|... -...+...++..+....+++.+.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 4556789999999998766 4566777788877788888887665
No 239
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.42 E-value=0.028 Score=56.10 Aligned_cols=109 Identities=12% Similarity=0.182 Sum_probs=59.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+.+++.||+|+|||... .++...+.. .+.+++|+.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~-~~f~~~~~~~l~~-----------~--------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS-ELFTEHLVSAIRS-----------G--------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH-HHHHHHHHHHHhc-----------c---------
Confidence 35899999999999854 344444432 2456777764 3444433322221 0
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHC-CCCCcEEEEEccCChhHHHH
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERL-PQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~ 293 (384)
..+.+.. .+.+.++++|||+|.+.... ....+..++..+ ....|+|+.|-+.|.....+
T Consensus 192 -----------~~~~f~~-------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 192 -----------EMQRFRQ-------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred -----------hHHHHHH-------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 0011111 12467899999999876532 234444454433 23566666665556555433
No 240
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.35 E-value=0.09 Score=51.01 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC-HHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT-RELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt-~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
++.+.++||||.|||..-.=-+...... ......+||-+-| |-=|..+.+.+.+.. ++++.+++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~------~~~~kVaiITtDtYRIGA~EQLk~Ya~im-~vp~~vv~~------- 268 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML------KKKKKVAIITTDTYRIGAVEQLKTYADIM-GVPLEVVYS------- 268 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh------ccCcceEEEEeccchhhHHHHHHHHHHHh-CCceEEecC-------
Confidence 6789999999999998632222222111 1222334444433 444444555555544 355444444
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChh-HHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPW-IRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~-~~~ 292 (384)
|.-|...+. .+.+.++|.||=+-+-. |.....+++.++..-.+.--.+.+|||--.. +++
T Consensus 269 --------------~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 269 --------------PKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred --------------HHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 333333322 24556777777665432 2224456666666654445578889997544 455
Q ss_pred HHHHhcC
Q 016712 293 LTNKYLK 299 (384)
Q Consensus 293 ~~~~~l~ 299 (384)
....|-.
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 5565543
No 241
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.35 E-value=0.02 Score=60.22 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.+++-|.+++.. .+..++|.|..|||||.+..--+...+... .-...++|+|+-|+.-|.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-----GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-----CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 356789999999999997655554444221 11244699999999999999999988653
No 242
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.34 E-value=0.1 Score=48.63 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+-++++|++|+|||....--+.. +. ..+.+++++.- .+.-+.++...+.+.. +++ ++..+....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~--------~~g~~V~li~~D~~r~~a~~ql~~~~~~~-~i~--~~~~~~~~d-- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LK--------KQGKSVLLAAGDTFRAAAIEQLEEWAKRL-GVD--VIKQKEGAD-- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HH--------hcCCEEEEEeCCCCCHHHHHHHHHHHHhC-CeE--EEeCCCCCC--
Confidence 45778899999999865433322 21 23566777763 3444444444443333 122 222221100
Q ss_pred HHHHhcCCCEEEECchhH-HHHHHccCCCCCCccEEEEeCcccccC-CChHHHHHHHHHHCC------CCCcEEEEEccC
Q 016712 215 MRALDYGVDAVVGTPGRV-IDLIKRNALNLSEVQFVVLDEADQMLS-VGFAEDVEVILERLP------QNRQSMMFSATM 286 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l-~~~l~~~~~~~~~l~~vViDEah~~~~-~~~~~~~~~il~~l~------~~~q~l~~SAT~ 286 (384)
|... ...+.. ....+.++||||=+-+... .....++..+.+..+ ++--++.++||.
T Consensus 139 --------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 139 --------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred --------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 1111 111110 0123467777776665432 223445566655544 455688889987
Q ss_pred ChhHHHHHHHhc
Q 016712 287 PPWIRSLTNKYL 298 (384)
Q Consensus 287 ~~~~~~~~~~~l 298 (384)
.......+..|.
T Consensus 203 ~~~~~~~~~~f~ 214 (272)
T TIGR00064 203 GQNALEQAKVFN 214 (272)
T ss_pred CHHHHHHHHHHH
Confidence 665555555554
No 243
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.34 E-value=0.04 Score=64.38 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.+++-|.+++..++.. +-.++.|+.|+|||.+ +-.+...+ + ..|.++++++||-.-+..+.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-~-------~~G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-S-------EQGYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-H-------hcCCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 5899999999998875 5688999999999985 23333333 2 2477899999999877665543221110
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCC
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNR 277 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~ 277 (384)
+.......+.. +.-..|...+ + .....+..-++|||||+-.+.. .++..+++.. +.+.
T Consensus 500 -----------Ti~~~l~~l~~--~~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 500 -----------TFITWVKNLFN--DDQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNS 558 (1960)
T ss_pred -----------hHHHHHHhhcc--cccchhHHHh---h-cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCC
Confidence 00011111111 1111122222 2 2223345678999999996533 3566667655 4678
Q ss_pred cEEEEEcc
Q 016712 278 QSMMFSAT 285 (384)
Q Consensus 278 q~l~~SAT 285 (384)
++|++-=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877544
No 244
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.32 E-value=0.024 Score=53.90 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=28.1
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
...++|||||+|.+........+..+++..+.++++|+.|.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 34678999999988433345566667777777777776443
No 245
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.31 E-value=0.15 Score=47.34 Aligned_cols=130 Identities=10% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec-C--HHHHHHHHHHHHHhCCCCceEEEECCCCh
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-T--RELAKQVEKEFHESAPSLDTICVYGGTPI 211 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P-t--~~La~q~~~~~~~~~~~~~~~~~~g~~~~ 211 (384)
.+..++++|++|+|||..+..-+.. +.. .+..+.++.- + ...+.|+........ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--~~---------- 132 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTIG--FE---------- 132 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhcC--ce----------
Confidence 4467899999999999965443332 211 2344555543 2 134445443333221 22
Q ss_pred HHHHHHHhcCCCEEE-ECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCC-h
Q 016712 212 SHQMRALDYGVDAVV-GTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMP-P 288 (384)
Q Consensus 212 ~~~~~~~~~~~~IlV-~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~-~ 288 (384)
+.. .+|..+...+..- -...+.++||||-+=+.... ....++..++....++.-++.+|||.. .
T Consensus 133 ------------~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 133 ------------VIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ------------EEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 221 2344443333211 11235789999988765422 234445555555555555778999865 4
Q ss_pred hHHHHHHHhc
Q 016712 289 WIRSLTNKYL 298 (384)
Q Consensus 289 ~~~~~~~~~l 298 (384)
...+.++.|-
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6667777764
No 246
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.31 E-value=0.068 Score=43.18 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHH
Q 016712 139 MIGRARTGTGKTLAF 153 (384)
Q Consensus 139 ~li~a~TGsGKT~~~ 153 (384)
+++.||+|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999853
No 247
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.30 E-value=0.17 Score=50.89 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=81.6
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH-
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL- 218 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 218 (384)
|-+.-.++||+..-++++.+.+.. +-.|.+||.+-+.+-|.|++..+. .++++++.+++|..+..+..+.+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~-------g~~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVAS-------GFKPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhc-------cCCCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHH
Confidence 334446889999888888777754 457789999999999999999998 67789999999997765544433
Q ss_pred --hcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 219 --DYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 219 --~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
+.| ..++||| +++.++ ++|.++.+||.++...
T Consensus 433 ~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 333 8999999 777766 8899999999987764
No 248
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.30 E-value=0.006 Score=62.48 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCCccEEEEeCcccccCCC-hHHHHHHHHHHCCC-CCcEEEEEccCChhH
Q 016712 243 LSEVQFVVLDEADQMLSVG-FAEDVEVILERLPQ-NRQSMMFSATMPPWI 290 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~~-~~q~l~~SAT~~~~~ 290 (384)
+.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 3457899999999876542 33445555555433 567776555555543
No 249
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.16 Score=53.56 Aligned_cols=128 Identities=12% Similarity=0.084 Sum_probs=61.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH--HHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL--AKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L--a~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+-+.++||||+|||.+...-+...... ..+.++.++.-...- +.++.+.+.+.. ++++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~-------~G~kkV~lit~Dt~RigA~eQL~~~a~~~-gvpv~----------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAR-------EGADQLALLTTDSFRIGALEQLRIYGRIL-GVPVH----------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHH-------cCCCeEEEecCcccchHHHHHHHHHHHhC-CCCcc-----------
Confidence 347899999999988654333222111 112345555443222 333333333333 12221
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChh-HHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~-~~~ 292 (384)
++.+|..+...+.. +++.++|+||=+=+.... ....++..+.....+..-++++|||.... +.+
T Consensus 247 ----------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 247 ----------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ----------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 22345544444432 335567777766654322 12233333333334455577778876443 344
Q ss_pred HHHHh
Q 016712 293 LTNKY 297 (384)
Q Consensus 293 ~~~~~ 297 (384)
....|
T Consensus 313 i~~~f 317 (767)
T PRK14723 313 VVHAY 317 (767)
T ss_pred HHHHH
Confidence 55555
No 250
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.03 Score=56.01 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=59.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
..+++.|++|+|||... ..+.+.+... ..+.+++|+.. .++..++...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 35889999999999743 3444444321 23556777665 566666555544310
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHHHCC-CCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILERLP-QNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~~l~-~~~q~l~~SAT~~~~ 289 (384)
+.+..... .+.++++|||||+|.+.... ....+..++..+. ...|+|+.|-..|..
T Consensus 195 -------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 195 -------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred -------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 00101111 13467899999999775432 3344555555543 345666655544433
No 251
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.26 E-value=0.056 Score=47.26 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=79.1
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH-HHHHHHHHHhCCCCceEEEECCCChH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA-KQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La-~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
.....+++.+++|.|||.+++--++..+ +.|.+|+++-=.+--. .-=...++.+ +++. ....+....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~---------g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~--~~~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV---------GHGKKVGVVQFIKGAWSTGERNLLEFG-GGVE--FHVMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH---------HCCCeEEEEEEecCCCccCHHHHHhcC-CCcE--EEECCCCCc
Confidence 3556899999999999999877777776 3477787775333221 0111223332 2222 222221100
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
... ...+--+......+.... ..+.-..+++||+||+-..++.|+ ..++..+++.-|.+.-+|+.--.+|+++
T Consensus 88 ~~~----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 88 WET----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred ccC----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 000 000000000001111111 122345789999999999888875 4566777777777777777666677776
Q ss_pred HHHHH
Q 016712 291 RSLTN 295 (384)
Q Consensus 291 ~~~~~ 295 (384)
.+++.
T Consensus 163 ie~AD 167 (191)
T PRK05986 163 IEAAD 167 (191)
T ss_pred HHhCc
Confidence 66654
No 252
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.21 E-value=0.043 Score=49.76 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=35.3
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..|.-+++.|++|+|||...+-.+...+ . .+..++|++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~--------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q--------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 3467899999999999986433333322 2 356688888 4444566666666554
No 253
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.20 E-value=0.017 Score=53.54 Aligned_cols=118 Identities=15% Similarity=0.064 Sum_probs=57.4
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE-CCCCh
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPI 211 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~-g~~~~ 211 (384)
+..|.-+++.|++|+|||...+--+.... . ..+..++|+.- .+-..++.+.+.....+....... .....
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~-------~~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 97 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLI-T-------QHGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIYT 97 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-------hcCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCcccccc
Confidence 44567889999999999985433333332 1 12566888763 233445555554432222211100 00011
Q ss_pred HHHH----HHHhcCCCEE-EE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 212 SHQM----RALDYGVDAV-VG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 212 ~~~~----~~~~~~~~Il-V~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.+.. ..+.....+. +- |++.+...+..-. .-.++++||||..+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 98 LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1111 1121112222 22 3444444443221 1236889999999987643
No 254
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=96.16 E-value=0.004 Score=45.92 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 349 LMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 349 ~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.|...++.+..+||+|+.++|++++++|++++.+|+
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vl 37 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVL 37 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEE
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEE
Confidence 567789999999999999999999999999998764
No 255
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.009 Score=59.87 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=78.4
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--C-CceEEEECCCCh-HHHHH
Q 016712 141 GRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--S-LDTICVYGGTPI-SHQMR 216 (384)
Q Consensus 141 i~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~-~~~~~~~g~~~~-~~~~~ 216 (384)
..+.||||||++..--+++.... ....-|+.|.......-....|..-.. . +.-.+.+++... -....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k--------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK--------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh--------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 45789999999876666655432 233477778777666655544433110 0 000111111110 00000
Q ss_pred ---HHhcCCCEEEECchhHHHHHHc---cCC---CCCCccEE-EEeCcccccCCC---------hHHHHHHH-HHHC--C
Q 016712 217 ---ALDYGVDAVVGTPGRVIDLIKR---NAL---NLSEVQFV-VLDEADQMLSVG---------FAEDVEVI-LERL--P 274 (384)
Q Consensus 217 ---~~~~~~~IlV~Tp~~l~~~l~~---~~~---~~~~l~~v-ViDEah~~~~~~---------~~~~~~~i-l~~l--~ 274 (384)
....+..|+++|...|...+.+ +.+ ++.+..+| +=||+|++.... -...++.. +-.+ .
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 1233578999999999877754 233 34555554 559999986432 11112221 1122 3
Q ss_pred CCCcEEEEEccCChhHHHHHHHh
Q 016712 275 QNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 275 ~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
++.-++.+|||.|.+ ......|
T Consensus 154 kd~~~lef~at~~k~-k~v~~ky 175 (812)
T COG3421 154 KDNLLLEFSATIPKE-KSVEDKY 175 (812)
T ss_pred CCceeehhhhcCCcc-ccHHHHh
Confidence 455688889999843 3333343
No 256
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.14 E-value=0.023 Score=57.35 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 124 PIQKAVLEPAMQ-----G----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 124 ~~Q~~~i~~i~~-----g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
|+|...+..+.. | +.+++.-|=|.|||.....-++..+.-. ...+..+++.+++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 678877776662 2 3578888999999986554444444321 1346789999999999999999988
Q ss_pred HhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--cCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 195 ESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
......+.....-... .... ..-.|..-..+.+...+.. +...-.+..++|+||+|.+-+......+..-+..
T Consensus 76 ~~i~~~~~l~~~~~~~---~~~~--~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~ 150 (477)
T PF03354_consen 76 KMIEASPELRKRKKPK---IIKS--NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA 150 (477)
T ss_pred HHHHhChhhccchhhh---hhhh--hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc
Confidence 8654321111000000 0000 0012222221222222211 1222336789999999987664333333333333
Q ss_pred CCCCCcEEEEE
Q 016712 273 LPQNRQSMMFS 283 (384)
Q Consensus 273 l~~~~q~l~~S 283 (384)
.++.+++..|
T Consensus 151 -r~~pl~~~IS 160 (477)
T PF03354_consen 151 -RPNPLIIIIS 160 (477)
T ss_pred -CCCceEEEEe
Confidence 2455655553
No 257
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.14 E-value=0.06 Score=56.86 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=82.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc------eEEEECCC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD------TICVYGGT 209 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~------~~~~~g~~ 209 (384)
|-.+|+.--.|-|||+- ++..++.++... ...-.++|||+|...+ .-|+++|.++.+++. +..+..-.
T Consensus 696 GsGcILAHcMGLGKTlQ-VvtflhTvL~c~----klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vk 769 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQ-VVTFLHTVLLCD----KLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVK 769 (1567)
T ss_pred CcchHHHHhhcccceeh-hhHHHHHHHHhh----ccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhcc
Confidence 34678888899999984 344444443321 1234579999998765 459999999887532 22222222
Q ss_pred ChHHH---HHHHhcCCCEEEECchhHHHHHHccCC-------------CCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 210 PISHQ---MRALDYGVDAVVGTPGRVIDLIKRNAL-------------NLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 210 ~~~~~---~~~~~~~~~IlV~Tp~~l~~~l~~~~~-------------~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
..... ...+.+.-.|.|.-.+.+..+-..... .-..-++||.||+|.+-+. ...+...+..+
T Consensus 770 r~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~i 847 (1567)
T KOG1015|consen 770 RPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSI 847 (1567)
T ss_pred ChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHH
Confidence 22222 233344446777666665443322211 1234689999999976553 33444555555
Q ss_pred CCCCcEEEEEccCC
Q 016712 274 PQNRQSMMFSATMP 287 (384)
Q Consensus 274 ~~~~q~l~~SAT~~ 287 (384)
...+ .|++|.||-
T Consensus 848 rtkR-RI~LTGTPL 860 (1567)
T KOG1015|consen 848 RTKR-RIILTGTPL 860 (1567)
T ss_pred Hhhe-eEEeecCch
Confidence 4444 566677753
No 258
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.10 E-value=0.044 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.++++.||+|+|||... .-++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999853 3344443
No 259
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.10 E-value=0.021 Score=61.81 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=92.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhh---------hccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC-ceEEE
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFN---------EKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL-DTICV 205 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~---------~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~-~~~~~ 205 (384)
|+++++.-..|.|||..-+.-.+...-... ........+-+|||+|.. +..||..++....+.. ++..+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccccceEEEE
Confidence 456788888999999976554443321100 001112245699999985 5578999999987654 66555
Q ss_pred ECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--------------CCCCC------CccEEEEeCcccccCCChHHH
Q 016712 206 YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--------------ALNLS------EVQFVVLDEADQMLSVGFAED 265 (384)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--------------~~~~~------~l~~vViDEah~~~~~~~~~~ 265 (384)
.|-...........-.+|||++|...|..-+... ....+ ++=.|++|||+.+-. -...
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~ 530 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSA 530 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHH
Confidence 5543322111122234899999999886655322 11111 122489999995544 3445
Q ss_pred HHHHHHHCCCCCcEEEEEccCChhHHHH
Q 016712 266 VEVILERLPQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 266 ~~~il~~l~~~~q~l~~SAT~~~~~~~~ 293 (384)
..+++.+++. ...-+.|.||...+..+
T Consensus 531 ~a~M~~rL~~-in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 531 AAEMVRRLHA-INRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHhhh-hceeeecCCchhhhhhh
Confidence 5566666643 44667799987665544
No 260
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.05 E-value=0.041 Score=57.96 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=53.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
+++-|.+++.. .+.+++|.|..|||||.+.+--+...+... .....++|+|+.|+.-+.++.+++.+..+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-----~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-----GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78999999865 356899999999999997655554444221 11245699999999999999999987653
No 261
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.03 E-value=0.097 Score=52.34 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=54.8
Q ss_pred HHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEE
Q 016712 130 LEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC 204 (384)
Q Consensus 130 i~~i~~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~ 204 (384)
++.++. |.-+++.|++|+|||...+-- ...+.. .+.+++|+.- .+-..|+......++-+..-..
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~-a~~~a~--------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~l~ 138 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQV-AARLAA--------AGGKVLYVSG-EESASQIKLRAERLGLPSDNLY 138 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHH-HHHHHh--------cCCeEEEEEc-cccHHHHHHHHHHcCCChhcEE
Confidence 445554 346889999999999854333 333221 2567888874 4556677777766553222111
Q ss_pred EECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 205 VYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+.... ..+.+...+.. .+.++||||+++.+..
T Consensus 139 ~~~e~------------------~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 139 LLAET------------------NLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred EeCCC------------------CHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 11111 11222233322 3578999999997754
No 262
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.02 E-value=0.11 Score=51.59 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=69.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.-+++.|++|.|||... +-+...+.. ..+..++|++ ...-..|+..++-....++....+..+.-..++.
T Consensus 194 g~liviag~pg~GKT~~a-l~ia~~~a~-------~~g~~v~~fS-lEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLA-LNIAENVAL-------REGKPVLFFS-LEMSAEQLGERLLASKSGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CceEEEEeCCCCCHHHHH-HHHHHHHHH-------hCCCcEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHH
Confidence 456788999999999854 444333321 1245577776 3334445554443332233322222222111111
Q ss_pred HHH------hcCCCEEEECc-----hhHHHHHHccCCCCCCccEEEEeCcccccC---CChHHHHHHHHHHCC-----CC
Q 016712 216 RAL------DYGVDAVVGTP-----GRVIDLIKRNALNLSEVQFVVLDEADQMLS---VGFAEDVEVILERLP-----QN 276 (384)
Q Consensus 216 ~~~------~~~~~IlV~Tp-----~~l~~~l~~~~~~~~~l~~vViDEah~~~~---~~~~~~~~~il~~l~-----~~ 276 (384)
..+ ..+..+.|.-. +.+...+..-.....++++||||=.|.|.. ......+..+.+.+. -+
T Consensus 265 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~ 344 (421)
T TIGR03600 265 NRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELD 344 (421)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111 11245555432 333333322111223689999999998763 123344445544432 26
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
+.++++|..
T Consensus 345 i~Vi~lsQl 353 (421)
T TIGR03600 345 VPVVLLAQL 353 (421)
T ss_pred CcEEEeccc
Confidence 788887764
No 263
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.03 Score=54.63 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=33.2
Q ss_pred CccEEEEeCcccccCC-ChHHHHHHHHHHCCC-CCcEEEEEccCChhHH
Q 016712 245 EVQFVVLDEADQMLSV-GFAEDVEVILERLPQ-NRQSMMFSATMPPWIR 291 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-~~~~~~~~il~~l~~-~~q~l~~SAT~~~~~~ 291 (384)
++++++||.+|.+... .....+-.++..+.. +.|+|+.|-.+|....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999987754 355556666666654 4478887777776644
No 264
>PLN03025 replication factor C subunit; Provisional
Probab=95.98 E-value=0.057 Score=51.50 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
...+++||||+|.|... -...+..+++..+..+.+++ +++.+
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeCCc
Confidence 35789999999998654 33445555655555555554 44433
No 265
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.93 E-value=0.067 Score=48.71 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|..+++.|++|+|||...+--+...+. .|..++|++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 467999999999999966544555442 366688888 5567777877777655
No 266
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.92 E-value=0.032 Score=62.78 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD 201 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~ 201 (384)
.|+-|.++|. ..+++++|.|..|||||.+.+--++..+... ..-.++|+|+=|+.-+.++.+++.+.....-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 6899999997 4688999999999999998766666655431 1224699999999999999888877542110
Q ss_pred eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCc--cEEEEeCccc
Q 016712 202 TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEV--QFVVLDEADQ 256 (384)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l--~~vViDEah~ 256 (384)
. .........+.+..-...-|+|-..+...+.+.....-++ .+=|.||...
T Consensus 74 ~----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0001112222333335678999888876554433222222 4556887775
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.91 E-value=0.079 Score=48.97 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999865
No 268
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.91 E-value=0.082 Score=60.64 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
.+++.|.+|+..++.+ +-++|.|..|+|||... -.++..+... ....+..++.++||-.-+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL----PESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh----hcccCceEEEECCcHHHHHHHH
Confidence 6899999999999875 56899999999999852 3333333210 0123567888999988776543
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.056 Score=51.71 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHhCCC----cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQGR----DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~----d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+|||...+..+.... -.++.||.|.|||..+. .+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~-~~A~~l 46 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE-RLAAAL 46 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH-HHHHHH
Confidence 5899999999887543 48899999999998653 333444
No 270
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.77 E-value=0.21 Score=48.46 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
.+.+.+.|++|.|||+. +-++...... ..+.+ ++..+.+.++.+.+.++. |+...-
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~------~~k~R----~HFh~Fm~~vh~~l~~~~---------~~~~~l--- 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPI------KRKRR----VHFHEFMLDVHSRLHQLR---------GQDDPL--- 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCc------ccccc----ccccHHHHHHHHHHHHHh---------CCCccH---
Confidence 46799999999999984 3333332111 01111 456677777777777754 111100
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCChh
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPW 289 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~ 289 (384)
..+.+.+ .++..+|++||+| +.|.+=.-.+..+++.+ ...+-+|+.|-++|..
T Consensus 118 --------------~~va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 118 --------------PQVADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred --------------HHHHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 0111222 2456689999999 45554444455555554 3467777778887765
No 271
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.072 Score=50.70 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHHH
Q 016712 120 SKLFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
..++|+|..++..+. .|+ -.++.||.|.||+..+. .+...+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHh
Confidence 468999999988765 343 48999999999998653 3444443
No 272
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.74 E-value=0.38 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPI 157 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~ 157 (384)
|.-+.++||||+|||.+...-+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3457899999999999754333
No 273
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.74 E-value=0.092 Score=45.20 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=40.6
Q ss_pred CCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 243 LSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
-.++++||+||+-..++.|+ ..++..+++..|++..+|+..-.+|+++.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998888774 356677787777788888877777877766654
No 274
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.73 E-value=0.097 Score=47.56 Aligned_cols=137 Identities=17% Similarity=0.104 Sum_probs=66.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec---CHHHHHHHHHHHHHhCCCCceE-EEECCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP---TRELAKQVEKEFHESAPSLDTI-CVYGGTP 210 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P---t~~La~q~~~~~~~~~~~~~~~-~~~g~~~ 210 (384)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|++. ..+++..+. ....++... ...+...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E~~~~~~~~r~~----~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLEMSKEQLLQRLL----ASESGISLSKLRTGSLS 79 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCCCCHHHHHHHHH----HHhcCCCHHHHhcCCCC
Confidence 45678999999999998543333433322 2556888873 333333322 111112111 1111111
Q ss_pred hHHH------HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC-
Q 016712 211 ISHQ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP- 274 (384)
Q Consensus 211 ~~~~------~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~- 274 (384)
.... ...+. ...+.|. |++.+...+..-.. -.++++||||=.+.+.... ....+..++..+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~ 157 (242)
T cd00984 80 DEDWERLAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKL 157 (242)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 1000 11111 2334442 44555554433211 1278999999998764332 2334445544443
Q ss_pred ----CCCcEEEEEcc
Q 016712 275 ----QNRQSMMFSAT 285 (384)
Q Consensus 275 ----~~~q~l~~SAT 285 (384)
.++.++++|-.
T Consensus 158 la~~~~~~ii~~~q~ 172 (242)
T cd00984 158 LAKELNVPVIALSQL 172 (242)
T ss_pred HHHHhCCeEEEeccc
Confidence 36667766643
No 275
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.71 E-value=0.067 Score=53.00 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=23.5
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.-.+|+|||+|++... ....++..+.. ..++++.+|-.+
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le~-~~iilI~att~n 130 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVED-GTITLIGATTEN 130 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhhc-CcEEEEEeCCCC
Confidence 4568999999986532 23344444443 456666666443
No 276
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=95.70 E-value=0.011 Score=43.33 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 346 TAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 346 ~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+...|...+..+..+||+|++++|.++++.|.+++.+|+
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 41 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVL 41 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEE
Confidence 455666779999999999999999999999999987653
No 277
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.70 E-value=0.068 Score=56.16 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=73.9
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH-hCCCCceEEEE
Q 016712 128 AVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE-SAPSLDTICVY 206 (384)
Q Consensus 128 ~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~-~~~~~~~~~~~ 206 (384)
+.+..+....-++|-+.||+|||.-+.--+++.+... +......+.+--|++..+.-+.+++.+ .+..+.-.|.+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n----s~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN----SNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhc----cccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 3444455556678899999999998877777777652 112233477777888888888777654 22212111211
Q ss_pred CCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 207 GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 207 g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
.-...... . ...--|+.+|-+-+++.+... +..+.++|+||.|.-
T Consensus 461 ~vRf~Sa~--p-rpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 461 NVRFDSAT--P-RPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER 505 (1282)
T ss_pred cccccccc--c-ccccceeeeccchhhhhhhhc---ccccccccchhhhhh
Confidence 11000000 0 001368999999988888655 346789999999954
No 278
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.67 E-value=0.025 Score=50.97 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=68.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCc-------eEEEECC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLD-------TICVYGG 208 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~-------~~~~~g~ 208 (384)
|..+++.|++|+|||...+--+...+.+ .+..++|++ +.+-..++.+.++.++-++. ...+...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 4679999999999999665445555422 044577777 45556778888887653221 1111111
Q ss_pred CChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 209 TPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 209 ~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
...... . -..++.+...+....-. .+.+.+|||-...+... .+...+..+...+.....+.++++
T Consensus 90 ~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 110000 0 11223333333221000 12279999998877211 245566666666655555666666
Q ss_pred cC
Q 016712 285 TM 286 (384)
Q Consensus 285 T~ 286 (384)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 279
>PRK06904 replicative DNA helicase; Validated
Probab=95.66 E-value=0.18 Score=50.73 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=73.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECC-CChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG-TPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~-~~~~~ 213 (384)
.|.=+++.|.+|.|||..+ +-+...+.. ..+..++|++ ...-..|+..++-....++...-+..+ .-..+
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~-------~~g~~Vl~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAM-------ASEKPVLVFS-LEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHH-------hcCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHH
Confidence 3345777899999999844 444433321 1244466654 345556666665554434433222222 11122
Q ss_pred HHH-------HHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC---
Q 016712 214 QMR-------ALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP--- 274 (384)
Q Consensus 214 ~~~-------~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~--- 274 (384)
+.. .+.....+.|- |+..+...+..-......+++||||=.+.|...+ ...++..+.+.+.
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lA 370 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALA 370 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 211 22223446663 4444443332211112368999999999775332 3344555555442
Q ss_pred --CCCcEEEEEcc
Q 016712 275 --QNRQSMMFSAT 285 (384)
Q Consensus 275 --~~~q~l~~SAT 285 (384)
-++.++++|.-
T Consensus 371 kel~ipVi~lsQL 383 (472)
T PRK06904 371 KELKVPVVALSQL 383 (472)
T ss_pred HHhCCeEEEEEec
Confidence 27888888743
No 280
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.65 E-value=0.24 Score=45.67 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHh----CCC-cEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~ 153 (384)
+++.+.+++..+. .+. .+++.|++|+|||...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 6777777776653 333 5889999999999854
No 281
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.60 E-value=0.06 Score=56.20 Aligned_cols=140 Identities=20% Similarity=0.148 Sum_probs=77.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM 215 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~ 215 (384)
-.|+.-.-|-|||...+..++..=...............|+++|+ .+..|+...+.+..+ .+.+.+++| ....
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g---r~kd- 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG---RTKD- 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---cccc-
Confidence 568888899999997644433221111100011234557888876 566788888855543 344455555 1111
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
.....+.|||++|++.+.. ..+.--.+-.+|+||+|.+...... .......+....+. .+|+|+...
T Consensus 229 ~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPiqn 295 (674)
T KOG1001|consen 229 KSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPIQN 295 (674)
T ss_pred cchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChhhh
Confidence 1122347899999987753 1111224557999999998765322 22222222223333 447776544
No 282
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.58 E-value=0.052 Score=51.69 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=43.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 112 AALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
..|.+.|+ +++.|.+.+.. +..+++++++|+||||||. ++-.++..+... ....++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc------CCCceEEEEcCCCcc
Confidence 34555665 57788887765 4567899999999999996 445555443210 224567777777776
No 283
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.56 E-value=0.06 Score=51.28 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHcCCCCCcHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+.+.|. +++.|...+..+ ..+++++++|+||||||.. +-.++..+... ..+.+++.+-.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS------APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC------CCCceEEEecCCcccc
Confidence 445564 577887776654 4567999999999999984 34555544220 1234677777777763
No 284
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.53 E-value=0.058 Score=48.28 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
.+-+.||+||||.|.+. -...+...++...+.+++.+..-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 56789999999988653 455566666665555555554444
No 285
>PHA00350 putative assembly protein
Probab=95.49 E-value=0.27 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=17.1
Q ss_pred EEEEccCCCchhHHHHH-HHHHHH
Q 016712 139 MIGRARTGTGKTLAFGI-PILDKI 161 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~l-p~l~~l 161 (384)
.++.|..|||||+.++- -++.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 57899999999997764 344444
No 286
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.48 E-value=0.2 Score=55.80 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=65.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|++|+++-+..+++.+++.++++++.+++|+.+..+..+.+ .+ ..+|+||| +.+. .++++.+++
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIie-rGIDIP~v~ 881 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIE-TGIDIPTAN 881 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhh-cccccccCC
Confidence 36789999999999999999999998889999999998766544433 33 58999999 5544 567899999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||++.+|++
T Consensus 882 ~VIi~~ad~f 891 (1147)
T PRK10689 882 TIIIERADHF 891 (1147)
T ss_pred EEEEecCCCC
Confidence 9999999873
No 287
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.47 E-value=0.24 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=17.2
Q ss_pred cE-EEEccCCCchhHHHHHHHHHHHH
Q 016712 138 DM-IGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 138 d~-li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
++ +|.|+||+|||.+. .-++..+.
T Consensus 782 nvLYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 44 59999999999975 33445553
No 288
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.45 E-value=0.21 Score=58.61 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
.+++.|.+|+..++.+ +-++|.|..|+|||... ..++..+.... ...+..++.++||-.-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~~----~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQAF----ESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHHH----HhcCCeEEEEeChHHHHHHHH
Confidence 6899999999998865 45688899999999854 22222221110 023677999999987776553
No 289
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.43 E-value=0.076 Score=56.60 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
..+++-|.+++.. ....++|.|..|||||.+..--+...+.... -...++|+++-|+.-|.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999975 3568999999999999976555544442210 1234699999999999999999988753
No 290
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.43 E-value=0.28 Score=42.36 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=76.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCC-------Ch
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT-------PI 211 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~-------~~ 211 (384)
+.|-...|-|||.+++=-++..+ +.|.+|+|+-=.+--...=...+-+..+++... ..+. ..
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa---------G~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~--~~g~~~~~~~~~~ 92 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA---------GQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWV--RCDLPRCLDTPHL 92 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh---------cCCCEEEEEEEecCCCcchHHHHHHhCCCcEEE--ECCCCCeeeCCCc
Confidence 45556779999999988888776 568888888644432111111122223333322 1111 10
Q ss_pred H-HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 212 S-HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 212 ~-~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
. +...... ..+.... ..+.-..+++||+||+-..++.|+ ..++..+++..|.+.-+|+.--.+|+
T Consensus 93 ~~~~~~~~~-----------~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~ 160 (178)
T PRK07414 93 DESEKKALQ-----------ELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPE 160 (178)
T ss_pred CHHHHHHHH-----------HHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 1 1111100 1111111 122235789999999998888875 35677777877777778887777787
Q ss_pred hHHHHHH
Q 016712 289 WIRSLTN 295 (384)
Q Consensus 289 ~~~~~~~ 295 (384)
++.+++.
T Consensus 161 ~Lie~AD 167 (178)
T PRK07414 161 SLLAIAD 167 (178)
T ss_pred HHHHhCC
Confidence 7666543
No 291
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.083 Score=55.43 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|.|....+ ..+.++++.-+.++.+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4578999999998876533 33444556555566666544
No 292
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.097 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=18.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.|+++-|+||+|||... .-++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 37999999999999864 33444443
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.40 E-value=0.32 Score=48.08 Aligned_cols=57 Identities=14% Similarity=-0.027 Sum_probs=31.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEE
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTIC 204 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~ 204 (384)
-++++|++|+|||....--+. .+.. .|.+++++.- .+.-+.++.+.+.+.. ++++..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~D~~R~aA~eQLk~~a~~~-~vp~~~ 160 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCADTFRAGAFDQLKQNATKA-RIPFYG 160 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcCcccchhHHHHHHHHhhcc-CCeEEe
Confidence 478999999999876432222 2211 2455666653 3445555544444432 344433
No 294
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.40 E-value=0.23 Score=48.38 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=50.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.-+++.|++|+|||...+- +...+.. .+.+++|+.-. +-..|+..+..++.-...-..+....
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l~l~~e~------ 145 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAK--------RGGKVLYVSGE-ESPEQIKLRADRLGISTENLYLLAET------ 145 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEECC-cCHHHHHHHHHHcCCCcccEEEEccC------
Confidence 45689999999999985433 3333321 24568888754 44566666666654222111111111
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
..+.+...+.. .+.++||||+++.+.
T Consensus 146 ------------~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 146 ------------NLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------cHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 11223333321 357899999999875
No 295
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.3 Score=48.21 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=61.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH-HHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR-ELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~-~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
|.-+.++||||+|||.....-+-..+... ......++...+. .=+.++...+.+.. ++++....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~------~~~~v~~i~~d~~rigalEQL~~~a~il-Gvp~~~v~-------- 255 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH------GADKVALLTTDSYRIGGHEQLRIYGKLL-GVSVRSIK-------- 255 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEecCCcchhHHHHHHHHHHHc-CCceecCC--------
Confidence 45688999999999986532222222110 1122344445442 22333344444443 33332222
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChh-HHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPW-IRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~-~~~ 292 (384)
++..+...+. .+.+.+.++||.+=+.-.. ....++..+.....+...++++|||.... +.+
T Consensus 256 -------------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 256 -------------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -------------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 2222212221 2456678888876322111 12223333222222344578899997655 445
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
....|-
T Consensus 319 ~~~~f~ 324 (420)
T PRK14721 319 VISAYQ 324 (420)
T ss_pred HHHHhc
Confidence 555553
No 296
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.38 E-value=0.32 Score=46.01 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
...++|||||+|.+... ....+..+++..+.++.+|+.+-
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 34679999999987543 33445555666566666666543
No 297
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.36 E-value=0.12 Score=53.36 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred CCCCcHHHHHHHHHHh---CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 119 ISKLFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.+-|.|.=.+-|+.+. +.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-++++++.++.
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHH
Confidence 3344555555555443 44678899999999999766555433321 367899999999999999888776
Q ss_pred hCCCCc----------eEEEECCCChHHHH--HHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 196 SAPSLD----------TICVYGGTPISHQM--RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 196 ~~~~~~----------~~~~~g~~~~~~~~--~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
.+..++ +....|+...-... .....| ..|..++-. .+...-.+.+++|||||+-+...
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~~-- 309 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNPG-- 309 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCHH--
Confidence 553221 11122221100000 000001 122222211 12223335789999999977553
Q ss_pred HHHHHHHHHHCC-CCCcEEEEEccCC
Q 016712 263 AEDVEVILERLP-QNRQSMMFSATMP 287 (384)
Q Consensus 263 ~~~~~~il~~l~-~~~q~l~~SAT~~ 287 (384)
.+..++-.+. .+..++++|.+..
T Consensus 310 --~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 310 --ALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred --HHHHHHHHHccCCCceEEEeCCCC
Confidence 3344444443 4677777787753
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=95.34 E-value=0.21 Score=46.92 Aligned_cols=19 Identities=37% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~ 154 (384)
|.++++.||+|+|||.++-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999999763
No 299
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.32 E-value=0.076 Score=54.64 Aligned_cols=131 Identities=19% Similarity=0.156 Sum_probs=81.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC----CCceEEEECCCChH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP----SLDTICVYGGTPIS 212 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~----~~~~~~~~g~~~~~ 212 (384)
+-.++..|=-.|||+... +++..+... ..|.+++|.+|.+..++.+++++..... .-.+....| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 568999999999999654 666555431 3588899999999999999998887542 111212222 110
Q ss_pred HHHHHHhcC--CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCCh
Q 016712 213 HQMRALDYG--VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPP 288 (384)
Q Consensus 213 ~~~~~~~~~--~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~ 288 (384)
.-.+.+| ..|.+++- -..+...-.+++++|||||+-+-+. .+..++-.+ ..+.++|.+|.|-..
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 0011112 24444431 1123344457999999999977654 333333333 248999999999654
No 300
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.30 E-value=0.07 Score=49.61 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 163 (384)
.+..+|+++++++-+.+.+.. ...=++|.||||||||.. +.+++.++..
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 455667777776555542221 112378999999999984 5667777643
No 301
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.30 E-value=0.36 Score=43.49 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=32.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.|..+++.|++|+|||....--+...+. .+..++++.- .+...++.+..+.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 3568999999999999865433333331 2456777764 444556655555443
No 302
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.059 Score=51.93 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++|+.||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 48999999999999865
No 303
>PRK04195 replication factor C large subunit; Provisional
Probab=95.28 E-value=0.16 Score=51.40 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999854
No 304
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.28 E-value=0.085 Score=47.26 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
++++.||+|.|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999854
No 305
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.084 Score=53.63 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+.+++||||+|.|....+ ..+.+.++..+.++.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4578999999998876533 34445666656677777654
No 306
>PHA00729 NTP-binding motif containing protein
Probab=95.25 E-value=0.33 Score=43.71 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=36.9
Q ss_pred CEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChH----HHHHHHHHHCCCCCcEEEEEccCChhHHHHHHH
Q 016712 223 DAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFA----EDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 223 ~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~----~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~ 296 (384)
..++.+.+.+...+....-.....+++||||+-.-... .+. .....+...+...++++.+...-|..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555555555555332111234578999994322111 011 112223334444567777776656666655554
No 307
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.12 Score=51.61 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=35.4
Q ss_pred CCCCCCccCCC---CCHHHHHHHHHcCCCCCcH---HHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLD---ISQDIVAALARRGISKLFP---IQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~---l~~~l~~~l~~~g~~~~~~---~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+.+.|+++| |+.+.-+.+.+++-.+..| +-+--+++ -+.+++-||+|+|||+.+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIA 273 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHH
Confidence 35678899885 6777666666554322222 22222222 267999999999999964
No 308
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.24 E-value=0.087 Score=55.70 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=27.6
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
+..++||||+|++... ....++..+. +.++++.+||-++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChHhhhhh
Confidence 4568999999986532 2233444443 46678888886554443333
No 309
>PTZ00293 thymidine kinase; Provisional
Probab=95.23 E-value=0.16 Score=45.16 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|+=.++.||.++|||.-.+.. +..... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~--------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTY--------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHH--------cCCceEEEEecc
Confidence 445688999999999744333 333322 366788888864
No 310
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.20 E-value=0.089 Score=57.13 Aligned_cols=80 Identities=13% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|++|+++-+..+++.+++.++++++..++|+.+..+....+ .+ ..+|+|+| +.+ ...+++.+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~ii-e~GIDIp~v~ 732 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TII-ETGIDIPNAN 732 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chh-hcccccccCC
Confidence 46789999999999999999999988889999999998765544433 33 48999999 444 3567899999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||++.+++.
T Consensus 733 ~VIi~~a~~~ 742 (926)
T TIGR00580 733 TIIIERADKF 742 (926)
T ss_pred EEEEecCCCC
Confidence 9999999873
No 311
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.14 Score=52.92 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....+++||||+|+|....+. .+.+.++.-+.++.+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 346789999999998765332 33334444445676666654
No 312
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.13 E-value=0.33 Score=50.55 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
...+++||||+|+|....+ ..+-+.++.-+.++.+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 4678999999998876533 3333445544445555554
No 313
>PRK07004 replicative DNA helicase; Provisional
Probab=95.10 E-value=0.15 Score=51.11 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
|.=+++.|.+|.|||..+ +-+...+.. ..+..+++++ ...-..|+..++-....++...-+ .|..+. ++
T Consensus 213 g~liviaarpg~GKT~~a-l~ia~~~a~-------~~~~~v~~fS-lEM~~~ql~~R~la~~~~v~~~~i~~g~l~~-~e 282 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFS-MNIGEYVAV-------EYGLPVAVFS-MEMPGTQLAMRMLGSVGRLDQHRMRTGRLTD-ED 282 (460)
T ss_pred CceEEEEeCCCCCccHHH-HHHHHHHHH-------HcCCeEEEEe-CCCCHHHHHHHHHHhhcCCCHHHHhcCCCCH-HH
Confidence 345788999999999854 433333321 1244466554 333344555554332222322212 222222 22
Q ss_pred HHHH------hcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----
Q 016712 215 MRAL------DYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (384)
Q Consensus 215 ~~~~------~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~----- 274 (384)
...+ ..+..+.|. |+..+...+.+-......+++||||=.+.|... .....+..|.+.++
T Consensus 283 ~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke 362 (460)
T PRK07004 283 WPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE 362 (460)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2111 123456653 333343333221112235899999999987532 23345556655543
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.++++|.-
T Consensus 363 l~ipVi~lsQL 373 (460)
T PRK07004 363 LDVPVIALSQL 373 (460)
T ss_pred hCCeEEEEecc
Confidence 27888888764
No 314
>PRK10867 signal recognition particle protein; Provisional
Probab=95.08 E-value=0.43 Score=47.40 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.7
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
-++++|++|+|||....-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478899999999986543
No 315
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.13 Score=53.40 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|+|....+ ..+.++++.-+.+..+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 3568999999998765533 34555566555566566544
No 316
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.07 E-value=0.32 Score=51.05 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=83.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 111 VAALARRGISKLFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
-..+.+...+....-|.+.+..++..+ -+++.|+-|=|||.+..+.+.... .. ....+++|.+|+.+=++.
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~------~~~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL------AGSVRIIVTAPTPANVQT 276 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh------cCCceEEEeCCCHHHHHH
Confidence 334555444344444444555555543 578899999999999887773332 21 114579999999998888
Q ss_pred HHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHH
Q 016712 189 VEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDV 266 (384)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~ 266 (384)
+++-+.+-+.. ++-.+..... ......-.+...|=+.+|.... ..-++||||||=.+. .+-+
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~--g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL 340 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDAL--GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLL 340 (758)
T ss_pred HHHHHHHhHHHhCCccccccccc--cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHH
Confidence 77665553321 1111111100 0000000012335556665432 116789999998652 3344
Q ss_pred HHHHHHCCCCCcEEEEEccCCh
Q 016712 267 EVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 267 ~~il~~l~~~~q~l~~SAT~~~ 288 (384)
..++. ..+.++||.|+..
T Consensus 341 ~~l~~----~~~rv~~sTTIhG 358 (758)
T COG1444 341 HKLLR----RFPRVLFSTTIHG 358 (758)
T ss_pred HHHHh----hcCceEEEeeecc
Confidence 44444 3467888999864
No 317
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.17 Score=44.07 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=51.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+=.+++||.+||||.--+.-+-... ..+.++++..|-.. ..+ +...+.-.-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~---------~~g~~v~vfkp~iD----------~R~-~~~~V~Sr~G~~~----- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK---------EAGMKVLVFKPAID----------TRY-GVGKVSSRIGLSS----- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH---------HcCCeEEEEecccc----------ccc-ccceeeeccCCcc-----
Confidence 3468899999999995433332222 23677888888532 111 1122222222111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
.-++|-.+..+.+.+......+. +++|.|||||-
T Consensus 60 -----~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF 93 (201)
T COG1435 60 -----EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF 93 (201)
T ss_pred -----cceecCChHHHHHHHHhcccCCC-cCEEEEehhHh
Confidence 24566666667777765433222 88999999995
No 318
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.06 E-value=0.043 Score=56.01 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=38.6
Q ss_pred CCCCCcHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhh
Q 016712 118 GISKLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKF 164 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~ 164 (384)
+..+|+.+|.+.+..+ -+|+--|+.+|||+|||++-+..++..+...
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 3457999999887764 4688889999999999999888888877554
No 319
>PRK05748 replicative DNA helicase; Provisional
Probab=95.05 E-value=0.23 Score=49.69 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=71.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
.-+++.|.+|.|||... +-++..+.. ..+..++|++ ...-..|+..++-....++....+..+.-...+..
T Consensus 204 ~livIaarpg~GKT~~a-l~ia~~~a~-------~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 204 DLIIVAARPSVGKTAFA-LNIAQNVAT-------KTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred ceEEEEeCCCCCchHHH-HHHHHHHHH-------hCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHH
Confidence 45788999999999854 444443321 1244466554 44445566666543332333221222221122221
Q ss_pred HH------hcCCCEEEE-C----chhHHHHHHccCCCCCCccEEEEeCcccccCC-----ChHHHHHHHHHHCC-----C
Q 016712 217 AL------DYGVDAVVG-T----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-----GFAEDVEVILERLP-----Q 275 (384)
Q Consensus 217 ~~------~~~~~IlV~-T----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-----~~~~~~~~il~~l~-----~ 275 (384)
.+ ..+..+.|. + ++.+...+..-.....++++||||=.|.|... .....+..+.+.+. -
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11 112345553 3 34444433221111136899999999987422 12334555555442 2
Q ss_pred CCcEEEEEccC
Q 016712 276 NRQSMMFSATM 286 (384)
Q Consensus 276 ~~q~l~~SAT~ 286 (384)
++.++++|..-
T Consensus 355 ~i~vi~lsQln 365 (448)
T PRK05748 355 KVPVIALSQLS 365 (448)
T ss_pred CCeEEEecccC
Confidence 68888887753
No 320
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.05 E-value=0.12 Score=48.89 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=42.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 112 AALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+.|.+.|. +++.|.+.+.. +..+++++++|+||||||.. +-.++..+.. .....+++++-.+.|+.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~------~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK------NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc------cCCCceEEEECCchhhc
Confidence 33445564 56666666655 44567999999999999984 3445554422 01245688888887773
No 321
>PRK08506 replicative DNA helicase; Provisional
Probab=95.05 E-value=0.21 Score=50.34 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
|.=+++.|.||.|||... +-+...+.. .+..++|++ ...-..|+..++-....+++..-+ .|..+..+.
T Consensus 192 G~LivIaarpg~GKT~fa-l~ia~~~~~--------~g~~V~~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~ 261 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLC-LNMALKALN--------QDKGVAFFS-LEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEW 261 (472)
T ss_pred CceEEEEcCCCCChHHHH-HHHHHHHHh--------cCCcEEEEe-CcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 345788999999999854 433333322 244566664 334556666665443333332212 222222111
Q ss_pred ------HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHC---C--
Q 016712 215 ------MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERL---P-- 274 (384)
Q Consensus 215 ------~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l---~-- 274 (384)
...+. +..+.|- |+..+...++.-.....++++||||=.+.|...+ ...++..|.+.| .
T Consensus 262 ~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAke 340 (472)
T PRK08506 262 ERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARE 340 (472)
T ss_pred HHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11122 2345543 3334443333211122468999999999775322 233444444433 2
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.++++|..
T Consensus 341 l~ipVi~lsQL 351 (472)
T PRK08506 341 LDIPIIALSQL 351 (472)
T ss_pred hCCcEEEEeec
Confidence 27888888754
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.04 E-value=0.55 Score=40.22 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=31.4
Q ss_pred CCccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 244 ~~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.+.+++|+|...... +......+..+........-++.++|+-.....+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 356788899887643 1123334444444334455577777776666555555554
No 323
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.04 E-value=0.17 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.++++.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999854 4444444
No 324
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.15 Score=51.41 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.+....+ ..+.+.++.-+++..+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 45788999999998765433 23344444444555555543
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.3 Score=47.54 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.+....+ ..+...++.-+.++.+|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 34678999999998865422 22333344444555566543
No 326
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.48 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp 156 (384)
++.++++||+|+|||....--
T Consensus 206 ~~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999865433
No 327
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.13 Score=48.81 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....++|||||||.|... -...+...+..-+.+..+++.+-
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 367899999999998663 34444445554445555555443
No 328
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.98 E-value=0.54 Score=40.50 Aligned_cols=138 Identities=18% Similarity=0.204 Sum_probs=66.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH-HHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~-La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
+.+-...|-|||.+++=-++..+ +.|.+|+++-=.+- --.-=.+.++.+. ++. +...+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---------G~G~rV~ivQFlKg~~~~GE~~~l~~l~-~~~--~~~~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---------GHGMRVLIVQFLKGGRYSGELKALKKLP-NVE--IERFGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---------CTT--EEEEESS--SS--HHHHHHGGGT---E--EEE--TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---------hCCCEEEEEEEecCCCCcCHHHHHHhCC-eEE--EEEcCCcccccCCC
Confidence 45566789999999887777776 56888988875554 1111122333332 322 22222111000000
Q ss_pred HhcCCCEEEECchhHHHHHH--ccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHH
Q 016712 218 LDYGVDAVVGTPGRVIDLIK--RNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~--~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~ 293 (384)
-. .+ .......+. ...+.-...++||+||+-..++.++ ..++..+++.-|...-+|+.--.+|+++.+.
T Consensus 74 ~~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 00 011111111 1233346799999999998888775 4567777777777788888777777777666
Q ss_pred HH
Q 016712 294 TN 295 (384)
Q Consensus 294 ~~ 295 (384)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 329
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.38 Score=49.85 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+.+.++|||||+|.|.... ...+.+.++..+.++.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 5678899999999886542 334444455555667677654
No 330
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.66 Score=45.71 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCccEEEEeCcccccC-CChHHHHHHHHHHCC---CCCcEEEEEccCCh-hHHHHHHHh
Q 016712 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERLP---QNRQSMMFSATMPP-WIRSLTNKY 297 (384)
Q Consensus 244 ~~l~~vViDEah~~~~-~~~~~~~~~il~~l~---~~~q~l~~SAT~~~-~~~~~~~~~ 297 (384)
.+.++||||=+-+... ......+..+++... +.--++++|||... .+.+....|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4568899996654422 223344455555442 22457888999877 455555555
No 331
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.92 E-value=0.16 Score=48.20 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=55.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
++.+++.|++|+|||... .++...+.. .|..+.++. .-+|+.++...+.. +
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~--------~g~~v~~~~-~~~l~~~lk~~~~~-----------~-------- 206 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK--------KGVSSTLLH-FPEFIRELKNSISD-----------G-------- 206 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH--------cCCCEEEEE-HHHHHHHHHHHHhc-----------C--------
Confidence 468999999999999854 344444432 244455443 33555554433211 0
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH--HHHHHHHH-HCCCCCcEEEEEccCCh
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA--EDVEVILE-RLPQNRQSMMFSATMPP 288 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~--~~~~~il~-~l~~~~q~l~~SAT~~~ 288 (384)
+...+++. +.++++|||||........+. ..+..|+. ++.....+++.|--...
T Consensus 207 ------------~~~~~l~~-------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~ 263 (306)
T PRK08939 207 ------------SVKEKIDA-------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFD 263 (306)
T ss_pred ------------cHHHHHHH-------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence 10111111 457889999999854322232 23344544 33345566665554333
No 332
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.92 E-value=0.18 Score=54.82 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=106.5
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh-------------
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK------------- 163 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~------------- 163 (384)
+...|.+||| -++++=.++|.. |.+-+..+...-|+|-.+.|=-=.|+=.-+.-+..+.-
T Consensus 710 kdv~FkdLGL--lIIDEEqRFGVk-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T 782 (1139)
T COG1197 710 KDVKFKDLGL--LIIDEEQRFGVK-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKT 782 (1139)
T ss_pred CCcEEecCCe--EEEechhhcCcc-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEE
Confidence 4567888886 355554555654 77777777777777777777777776443333332210
Q ss_pred -----------hhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH----hcCCCEEEEC
Q 016712 164 -----------FNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL----DYGVDAVVGT 228 (384)
Q Consensus 164 -----------~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~IlV~T 228 (384)
..-...-.+|+|+-||.|..+-..++.+.++++.|..++.+.+|-....+..+.+ ....||+|||
T Consensus 783 ~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 783 FVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred EEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 0000112469999999999999999999999999999999999998876655444 2358999999
Q ss_pred chhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 229 PGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 229 p~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
..+ ..+++..+...+|||-||++
T Consensus 863 -----TII-EtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 863 -----TII-ETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred -----eee-ecCcCCCCCceEEEeccccc
Confidence 444 45678999999999999985
No 333
>PRK05973 replicative DNA helicase; Provisional
Probab=94.91 E-value=0.3 Score=44.40 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=36.4
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+..|.-++|.|++|+|||...+--+..... .|..++|++- .+=..|+.+++..++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK---------SGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 445567899999999999966544444431 2556777753 333567777777664
No 334
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.85 E-value=0.099 Score=50.11 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+..+++++++|+||||||. ++-.++..+ ....+++.+=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~i---------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREI---------PAIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhC---------CCCCeEEEecCCCccc
Confidence 34567899999999999998 345555544 2245677665666653
No 335
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=0.15 Score=53.11 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=26.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+.+.+++||||+|.|.... ...+.+.++.-+.++.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876532 334455555555667666654
No 336
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.80 E-value=0.28 Score=48.93 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEE-CCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVY-GGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~-g~~~~~~~ 214 (384)
|.=+++.|++|+|||... +-+...+.. ..+..++|++ ...-..|+.+++-....++....+. |.....+.
T Consensus 195 G~l~vi~g~pg~GKT~~~-l~~a~~~a~-------~~g~~vl~~S-lEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFA-LNIAENAAI-------KEGKPVAFFS-LEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CeEEEEEeCCCCChHHHH-HHHHHHHHH-------hCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH
Confidence 345788999999999844 444333321 1244566664 3344455555555443334322222 22222111
Q ss_pred ------HHHHhcCCCEEE-E----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----
Q 016712 215 ------MRALDYGVDAVV-G----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (384)
Q Consensus 215 ------~~~~~~~~~IlV-~----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~----- 274 (384)
...+.+ ..+.| . |+..+...+..-... ..+++||||=.+.+... ....++..+.+.|.
T Consensus 266 ~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e 343 (434)
T TIGR00665 266 EKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE 343 (434)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 112222 34444 2 334444433321111 34889999999877532 23344555544443
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.++++|-.
T Consensus 344 ~~i~vi~lsql 354 (434)
T TIGR00665 344 LNVPVIALSQL 354 (434)
T ss_pred hCCeEEEEecc
Confidence 37888888764
No 337
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.79 E-value=0.13 Score=43.98 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=28.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
...+++||||+|.|... -...+.+.++.-+.++.+++.|..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECC
Confidence 56889999999998765 455666666666667767666554
No 338
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.32 Score=50.20 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
..+.+++||||+|.|.... ...+.+.++..+.++-+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 3567899999999886553 334445555555566666655 433
No 339
>PRK08840 replicative DNA helicase; Provisional
Probab=94.77 E-value=0.45 Score=47.82 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~ 213 (384)
.|.=+++.|.+|.|||..+ +-+...+.. ..+..++|++. ..-..|+..++-....++...-+ .|..+..+
T Consensus 216 ~g~LiviaarPg~GKTafa-lnia~~~a~-------~~~~~v~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e 286 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA-MNLCENAAM-------DQDKPVLIFSL-EMPAEQLMMRMLASLSRVDQTKIRTGQLDDED 286 (464)
T ss_pred CCceEEEEeCCCCchHHHH-HHHHHHHHH-------hCCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHH
Confidence 3445778899999999854 333333321 12445666653 23445565555443333322212 22222222
Q ss_pred HH------HHHhcCCCEEEE-C----chhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC----
Q 016712 214 QM------RALDYGVDAVVG-T----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP---- 274 (384)
Q Consensus 214 ~~------~~~~~~~~IlV~-T----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~---- 274 (384)
.. ..+.....+.|- + +..+...+..-......+++||||=.|.|...+ ...++..+.+.|+
T Consensus 287 ~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAk 366 (464)
T PRK08840 287 WARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAK 366 (464)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 11 122123345553 2 233333222211122358999999999875222 2344555555443
Q ss_pred -CCCcEEEEEcc
Q 016712 275 -QNRQSMMFSAT 285 (384)
Q Consensus 275 -~~~q~l~~SAT 285 (384)
-++.++++|.-
T Consensus 367 el~ipVi~LsQL 378 (464)
T PRK08840 367 ELNVPVVALSQL 378 (464)
T ss_pred HhCCeEEEEEec
Confidence 27888888743
No 340
>PF05729 NACHT: NACHT domain
Probab=94.74 E-value=0.74 Score=38.52 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=30.2
Q ss_pred EEEEeCcccccCCC-------hHHHHHHHHHH-CCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 248 FVVLDEADQMLSVG-------FAEDVEVILER-LPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 248 ~vViDEah~~~~~~-------~~~~~~~il~~-l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
++|||=+|.+.... +...+..++.. +++++.+++.|.+ ..... ....+.....+.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~--~~~~~-~~~~~~~~~~~~l 147 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP--RAFPD-LRRRLKQAQILEL 147 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC--ChHHH-HHHhcCCCcEEEE
Confidence 48999999887632 22334445554 4556776665543 22222 4444544444444
No 341
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.043 Score=54.77 Aligned_cols=18 Identities=33% Similarity=0.224 Sum_probs=15.0
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
.+|++||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999997633
No 342
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.69 E-value=0.85 Score=43.46 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCccEEEEeCcccccC-CChHHHHHHHHHHC------CCCCcEEEEEccCChhHHHHHHHhc
Q 016712 244 SEVQFVVLDEADQMLS-VGFAEDVEVILERL------PQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 244 ~~l~~vViDEah~~~~-~~~~~~~~~il~~l------~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
.+.++||||=+-++.. ...-.++..+.+.+ .+..-++.++||........+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 4578888887776542 22334555555432 2334578889997665555556654
No 343
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.24 Score=52.98 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
...+++||||+|+|... -...+.++++.-+.++.+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 46789999999988544 223344444544455666664 444443
No 344
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.67 E-value=0.026 Score=48.75 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=54.8
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD 219 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 219 (384)
++.|+-|-|||.+..+.+...+.. ...+++|-+|+.+=++.+++.+......+....-. ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK-KKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccccc-cccccccccccc
Confidence 578999999999776665443321 22479999999998888776665543322211100 000000000111
Q ss_pred cCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 220 YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 220 ~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+..|-+..|+.+... ....+++|||||=.+. .+.+..++ .....++||.|...
T Consensus 72 ~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll----~~~~~vv~stTi~G 125 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLL----RRFPRVVFSTTIHG 125 (177)
T ss_dssp -CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH----CCSSEEEEEEEBSS
T ss_pred ccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHH----hhCCEEEEEeeccc
Confidence 2356767777655322 1245889999998642 23334443 34557788999864
No 345
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.66 E-value=0.094 Score=45.54 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=27.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
.+++++++.|++|+|||..+. .+...+.. .|..++++ ...+|+..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~-ai~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAV-AIANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHH-HHHHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHH-HHHHHhcc--------CCcceeEe-ecCceeccc
Confidence 357899999999999999753 34444433 24556664 455665554
No 346
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.38 Score=46.01 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhC--CC---cEEEEccCCCchhHHHHH
Q 016712 122 LFPIQKAVLEPAMQ--GR---DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~--g~---d~li~a~TGsGKT~~~~l 155 (384)
.+|||...|..+.. ++ -+++.||.|.|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 37888888888763 32 589999999999986533
No 347
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.63 E-value=0.87 Score=39.60 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
....++|||||+|.+... ....+...++..+++.-+|+.
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 467789999999998654 233344444443334444444
No 348
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.14 Score=49.48 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=31.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCC-cHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 99 LDISKLDISQDIVAALARRGISKL-FPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..|+..-|++.+.+.+++.-..+- |.--+. --+|+++-||+|+|||+.+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a------pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQA------PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccc------hhhheeeeCCCCCCchHHH
Confidence 447777789888888776432211 110000 0169999999999999854
No 349
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.35 Score=49.48 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=26.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|+|... -...+...++.-+..+.+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 356789999999998664 2334445555555566666655
No 350
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.58 E-value=0.058 Score=51.88 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.+..+++++++|+||||||.. +-.++..+ ....+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i---------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI---------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc---------CCCCCEEEECCCcccc
Confidence 455778999999999999983 34444443 1234577777887764
No 351
>PRK08760 replicative DNA helicase; Provisional
Probab=94.55 E-value=0.25 Score=49.83 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=69.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH-
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ- 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~- 214 (384)
.=++|.|.+|.|||... +-+...+.. ..+..++|.+. ..-..|+..++.....++...-+ .|..+..+.
T Consensus 230 ~LivIaarPg~GKTafa-l~iA~~~a~-------~~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 230 DLIILAARPAMGKTTFA-LNIAEYAAI-------KSKKGVAVFSM-EMSASQLAMRLISSNGRINAQRLRTGALEDEDWA 300 (476)
T ss_pred ceEEEEeCCCCChhHHH-HHHHHHHHH-------hcCCceEEEec-cCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHH
Confidence 45788999999999854 444333321 12444666643 33345666666554433332222 222222111
Q ss_pred -----HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----C
Q 016712 215 -----MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----Q 275 (384)
Q Consensus 215 -----~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~-----~ 275 (384)
...+. ...+.|. |++.+...+..-. .-.++++||||=.+.|... ....++..|.+.|. -
T Consensus 301 ~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel 378 (476)
T PRK08760 301 RVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL 378 (476)
T ss_pred HHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 11122 2445544 3344433333211 1235899999999977422 22334555544432 2
Q ss_pred CCcEEEEEcc
Q 016712 276 NRQSMMFSAT 285 (384)
Q Consensus 276 ~~q~l~~SAT 285 (384)
++.++++|..
T Consensus 379 ~ipVi~lsQL 388 (476)
T PRK08760 379 NVPVIALSQL 388 (476)
T ss_pred CCEEEEeecc
Confidence 7788888754
No 352
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.50 E-value=0.28 Score=47.15 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHhC--C---CcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQ--G---RDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~--g---~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.+|||...+..+.. + +-.++.||.|.||+..+ ..+.+.+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHc
Confidence 47888888887664 3 25789999999999866 33334443
No 353
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.50 E-value=0.095 Score=48.33 Aligned_cols=142 Identities=16% Similarity=0.090 Sum_probs=70.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.=+++.|.+|.|||...+=-+.+.. . ..+..++|++.-- -..++..++-....++...-+..+.-...+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a-~-------~~~~~vly~SlEm-~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAA-L-------NGGYPVLYFSLEM-SEEELAARLLARLSGVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHH-H-------TTSSEEEEEESSS--HHHHHHHHHHHHHTSTHHHHHCCGCHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHH-H-------hcCCeEEEEcCCC-CHHHHHHHHHHHhhcchhhhhhccccCHHHH
Confidence 34578899999999985544444333 2 1246788887531 1122333322222122211111222122222
Q ss_pred HH-------HhcCCCEEEECch----hHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----C
Q 016712 216 RA-------LDYGVDAVVGTPG----RVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----Q 275 (384)
Q Consensus 216 ~~-------~~~~~~IlV~Tp~----~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~-----~ 275 (384)
.. +....-.+..+|. .+...+..-.....++++||||=.|.+... +....+..+.+.|. .
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~ 169 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL 169 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 22 2222223334433 444444332222368899999999987753 24455555544442 2
Q ss_pred CCcEEEEEccC
Q 016712 276 NRQSMMFSATM 286 (384)
Q Consensus 276 ~~q~l~~SAT~ 286 (384)
++.++++|..-
T Consensus 170 ~i~vi~~sQln 180 (259)
T PF03796_consen 170 NIPVIALSQLN 180 (259)
T ss_dssp TSEEEEEEEBS
T ss_pred CCeEEEccccC
Confidence 77888887753
No 354
>PRK09087 hypothetical protein; Validated
Probab=94.44 E-value=0.16 Score=45.89 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=31.5
Q ss_pred cEEEEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEEccCChhHHH---HHHHhcCCCeEEEecC
Q 016712 247 QFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSATMPPWIRS---LTNKYLKNPLTVDLVG 308 (384)
Q Consensus 247 ~~vViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~SAT~~~~~~~---~~~~~l~~~~~i~~~~ 308 (384)
++|+||++|.+.. -...+-.++..+.. ..++|+.|.|.|+.... -+..-+.....+.+.+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~ 152 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGE 152 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCC
Confidence 3799999997632 23445556655544 45555544444443221 1333334445555543
No 355
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.40 E-value=0.73 Score=43.19 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 358999999999999865
No 356
>PRK04328 hypothetical protein; Provisional
Probab=94.39 E-value=0.53 Score=43.19 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.|..+++.|++|+|||...+--+...+. .+..++|++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 3467899999999999865444444442 355677777 5556666777776664
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.37 E-value=0.4 Score=43.41 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||....--+...+ ..+.+++|+.=- +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~---------~~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL---------KQGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH---------hCCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 45688999999999986544444433 135667777754 33456667676654
No 358
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.37 E-value=0.64 Score=47.47 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=81.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH----HHhCCCCceEEEECCCChH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF----HESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~----~~~~~~~~~~~~~g~~~~~ 212 (384)
+-.+..-|--.|||+ ++.|++..++.. -.|-++.|+++-+-.++-+++++ +++++.-.+...-+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~----- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD----- 270 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-----
Confidence 567888899999998 788888888762 45788999999988887766554 44554332222111
Q ss_pred HHHHHHhcCCCEEEECchhH-----HHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccC
Q 016712 213 HQMRALDYGVDAVVGTPGRV-----IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATM 286 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l-----~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~ 286 (384)
--|.+.-|+.= +.....+.+.-.+.++++|||||-+- ...+..|+-.+. +++.+|..|.|-
T Consensus 271 ---------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 ---------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ---------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 12333333221 12223345566789999999999653 234555666554 578899999885
No 359
>PRK08006 replicative DNA helicase; Provisional
Probab=94.33 E-value=0.65 Score=46.77 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=71.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
|.=+++.|.+|.|||..+ +-+...+.. ..+..++|.+. ..-..|+..++-....++...-+ .|..+..+.
T Consensus 224 G~LiiIaarPgmGKTafa-lnia~~~a~-------~~g~~V~~fSl-EM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFA-MNLCENAAM-------LQDKPVLIFSL-EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hcCCeEEEEec-cCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH
Confidence 345677899999999844 444333321 12445666643 23445555555443333332222 232222221
Q ss_pred H------HHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----
Q 016712 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP----- 274 (384)
Q Consensus 215 ~------~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~----- 274 (384)
. ..+.....+.|- |+..+...+..-......+++||||=.|.|... ....++..|.+.|+
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 374 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE 374 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1 112123455553 333443333221112236899999999977522 23445566655543
Q ss_pred CCCcEEEEEcc
Q 016712 275 QNRQSMMFSAT 285 (384)
Q Consensus 275 ~~~q~l~~SAT 285 (384)
-++.+|++|-.
T Consensus 375 l~ipVi~LsQL 385 (471)
T PRK08006 375 LQVPVVALSQL 385 (471)
T ss_pred hCCeEEEEEec
Confidence 27888888854
No 360
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.31 E-value=0.21 Score=46.73 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
+.++++||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998653
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.30 E-value=1 Score=44.63 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
-++++|++|+|||....-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999987543
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.28 E-value=0.71 Score=48.75 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=38.1
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
+-=++|+|+-|.+.+.-....+..+++..|++...++.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34589999999999988888999999999999999998877653
No 363
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.27 E-value=0.79 Score=50.02 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=35.3
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.--+||||++|.+.+......+..+++..+.+..+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 33579999999987665667888899999989999888877544
No 364
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=0.43 Score=45.57 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.+|||...+..+. +|+ -.++.||.|.||+..+. .+...+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~-~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR-ALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH-HHHHHHc
Confidence 4688887777654 443 57899999999998653 3334443
No 365
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.3 Score=49.98 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=25.7
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.|....+ ..+.+.++..+.++.+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998865433 23444445545566666655
No 366
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.16 Score=52.38 Aligned_cols=97 Identities=24% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.=++++||+|.|||-. +..+++.+.+-+ +.+..||.....+.
T Consensus 350 GpILcLVGPPGVGKTSL---------------------------------gkSIA~al~Rkf----vR~sLGGvrDEAEI 392 (782)
T COG0466 350 GPILCLVGPPGVGKTSL---------------------------------GKSIAKALGRKF----VRISLGGVRDEAEI 392 (782)
T ss_pred CcEEEEECCCCCCchhH---------------------------------HHHHHHHhCCCE----EEEecCccccHHHh
Confidence 34578899999999963 233333333322 23455666554444
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
+.-++ --+=+-||++..-+...... =-++++||+|.|.....+.--..+++-|.
T Consensus 393 RGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 393 RGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 43322 22335699999988764321 12689999999998766655666666663
No 367
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.20 E-value=0.68 Score=46.99 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~l 155 (384)
+.+|++||.|+|||.++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999997633
No 368
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.15 E-value=0.57 Score=46.96 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM 215 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (384)
|.-+++.|++|+|||...+- +...+.. .+.+++|+..- +-..|+..++.++.-......+...
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~--------~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~~l~~~~e------- 156 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAK--------NQMKVLYVSGE-ESLQQIKMRAIRLGLPEPNLYVLSE------- 156 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCcEEEEECc-CCHHHHHHHHHHcCCChHHeEEcCC-------
Confidence 45689999999999985543 3333322 24568888753 4556777666665422111111111
Q ss_pred HHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 216 RALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 216 ~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
.+.+.+...+.. .+.++||||.++.+.
T Consensus 157 -----------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 -----------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred -----------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 122334444432 246799999999765
No 369
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.12 E-value=0.11 Score=49.27 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=44.4
Q ss_pred CCCCCcHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
.|..+++.|...+..+..++ |++++|.||||||.. +-++..... ..-+++.+--|.||--+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 45578999999988877665 999999999999983 333332221 23378999888888544
No 370
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.11 Score=49.57 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=36.7
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCC-CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGIS-KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
-+.+|.+.|=-+.+.++|.+.-.- --+|-.-.--..+...+.+++-||+|+|||.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 346788888778888888875221 112222221222334578999999999999965
No 371
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.00 E-value=0.17 Score=44.20 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=29.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHH-hCCCcEEEEccCCCchhHH
Q 016712 113 ALARRGISKLFPIQKAVLEPA-MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i-~~g~d~li~a~TGsGKT~~ 152 (384)
.|.+.|+ .++.|...+... ..|..++++||||+|||..
T Consensus 3 ~l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 3 DLIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3455564 678888877764 4678999999999999984
No 372
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=94.00 E-value=0.53 Score=44.58 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=65.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCC-hHHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP-ISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
.+.-+++.+|+.+.++|....+++.++...+..+++... ..+....+.+| .+|+|+| ..+.+ .+.+.+++.+
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILER-GVTfp~vdV~ 377 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILER-GVTFPNVDVF 377 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhc-ccccccceEE
Confidence 355699999999999999999988887777666666544 44555666665 7899999 56654 5568999999
Q ss_pred EEeCcccccCC
Q 016712 250 VLDEADQMLSV 260 (384)
Q Consensus 250 ViDEah~~~~~ 260 (384)
|++-.|+++..
T Consensus 378 Vlgaeh~vfTe 388 (441)
T COG4098 378 VLGAEHRVFTE 388 (441)
T ss_pred EecCCcccccH
Confidence 99999987654
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.98 E-value=0.52 Score=50.23 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=26.7
Q ss_pred cEEEEeCcccccCCCh----HHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 247 QFVVLDEADQMLSVGF----AEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 247 ~~vViDEah~~~~~~~----~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
.+|+|||+|.+...|- ..+...+++.+-....+.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999875432 2344444554333445666667766554
No 374
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.26 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=16.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
-+++.||.|+|||.++. .+...+
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHH
Confidence 35999999999999763 334444
No 375
>PRK05636 replicative DNA helicase; Provisional
Probab=93.90 E-value=0.41 Score=48.62 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=64.3
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
=+++.|.+|.|||...+ -+...+.. ..+..++|+ ....-..|+..++-....++....+..+.-..++...
T Consensus 267 Liiiaarpg~GKT~~al-~~a~~~a~-------~~g~~v~~f-SlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~ 337 (505)
T PRK05636 267 MIIVAARPGVGKSTLAL-DFMRSASI-------KHNKASVIF-SLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEK 337 (505)
T ss_pred eEEEEeCCCCCHHHHHH-HHHHHHHH-------hCCCeEEEE-EeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHH
Confidence 46788999999998544 33332211 123446665 3333334444443332222322222222212222221
Q ss_pred H------hcCCCEEEE-Cch----hHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC---C--CC
Q 016712 218 L------DYGVDAVVG-TPG----RVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP---Q--NR 277 (384)
Q Consensus 218 ~------~~~~~IlV~-Tp~----~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~---~--~~ 277 (384)
+ .....+.|- +|+ .+...++.-.. -..+++||||=.|.|.... ....+..+.+.|. + ++
T Consensus 338 ~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~i 416 (505)
T PRK05636 338 LVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDV 416 (505)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 1 112445553 333 23222222111 1358999999999875321 2234444544432 2 78
Q ss_pred cEEEEEc
Q 016712 278 QSMMFSA 284 (384)
Q Consensus 278 q~l~~SA 284 (384)
.++++|.
T Consensus 417 pVi~lsQ 423 (505)
T PRK05636 417 PLIAISQ 423 (505)
T ss_pred eEEEEee
Confidence 8888875
No 376
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.88 E-value=0.62 Score=45.06 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....+++||||+|.|... -...+-++++.-+.+..++++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEEC
Confidence 346789999999998654 33445555666555666666653
No 377
>PRK09165 replicative DNA helicase; Provisional
Probab=93.86 E-value=0.56 Score=47.59 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=70.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHh-hhhcc------CCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIK-FNEKH------GRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGT 209 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~-~~~~~------~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~ 209 (384)
.=+++.|.||.|||..++ -+...+.. ..... ....+..++|+ ....-..|+..++-....++....+..+.
T Consensus 218 ~livIaarpg~GKT~~al-~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~~i~~~~ 295 (497)
T PRK09165 218 DLIILAGRPSMGKTALAT-NIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSSKIRRGK 295 (497)
T ss_pred ceEEEEeCCCCChHHHHH-HHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 347889999999998543 33333321 10000 00124556666 44445566666665543334322222222
Q ss_pred ChHHHHHHHh------cCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC------hHHHHHHHHHH
Q 016712 210 PISHQMRALD------YGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG------FAEDVEVILER 272 (384)
Q Consensus 210 ~~~~~~~~~~------~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~------~~~~~~~il~~ 272 (384)
-..++...+. ....+.|- |++.+...+.+-.. -..+++||||=.|.|...+ ...++..+.+.
T Consensus 296 l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~ 374 (497)
T PRK09165 296 ISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQG 374 (497)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHH
Confidence 1222221111 12345543 33444443432111 2358999999999775321 22345555443
Q ss_pred CC-----CCCcEEEEEcc
Q 016712 273 LP-----QNRQSMMFSAT 285 (384)
Q Consensus 273 l~-----~~~q~l~~SAT 285 (384)
|. -++.++++|.-
T Consensus 375 LK~lAkel~ipVi~lsQL 392 (497)
T PRK09165 375 LKALAKELNIPVIALSQL 392 (497)
T ss_pred HHHHHHHhCCeEEEeecc
Confidence 32 27778887763
No 378
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.3 Score=50.57 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.|... -...+.+.++.-+.++-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457889999999987654 2334455555545556566544
No 379
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.80 E-value=0.43 Score=48.50 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred CHHHHHHHHHcCCCCCcH----HHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe
Q 016712 107 SQDIVAALARRGISKLFP----IQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA 180 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~----~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~ 180 (384)
++-++..|++.-=.+++. +|.+==+.+. .++-++|+|..|||||.+++--+...+..++.. -.+..+||+.
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~---l~~k~vlvl~ 267 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP---LQAKPVLVLG 267 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc---cccCceEEEc
Confidence 344667777653333433 3333222233 235689999999999998765554444333221 1234499999
Q ss_pred cCHHHHHHHHHHHHHhCC
Q 016712 181 PTRELAKQVEKEFHESAP 198 (384)
Q Consensus 181 Pt~~La~q~~~~~~~~~~ 198 (384)
|.+-+..-+.+.+-+++.
T Consensus 268 PN~vFleYis~VLPeLGe 285 (747)
T COG3973 268 PNRVFLEYISRVLPELGE 285 (747)
T ss_pred CcHHHHHHHHHhchhhcc
Confidence 999999888888877774
No 380
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.79 E-value=0.14 Score=52.76 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=84.5
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH-HHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE-KEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~-~~~~~~~ 197 (384)
..+|+|.+.++.+... +.++++.++-+|||.+.+-.+...+ . ....-+|++.||.++|.+.. .++..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~-------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D-------QDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E-------eCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5789999999887654 5799999999999996544443333 2 23445999999999999876 3455443
Q ss_pred CCCce--EEEEC----CCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC--ChHHHHHHH
Q 016712 198 PSLDT--ICVYG----GTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV--GFAEDVEVI 269 (384)
Q Consensus 198 ~~~~~--~~~~g----~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~--~~~~~~~~i 269 (384)
...+. ..+.. ..........+. |..+.++..++- ..+.-..++++++||.|.+... +-+.-+...
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la 160 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELA 160 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHH
Confidence 22221 01111 011111111122 334444432211 1222345889999999998532 122223333
Q ss_pred HHHCC--CCCcEEEEEccCChh
Q 016712 270 LERLP--QNRQSMMFSATMPPW 289 (384)
Q Consensus 270 l~~l~--~~~q~l~~SAT~~~~ 289 (384)
.++.. .....+++..|+...
T Consensus 161 ~~R~~tf~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 161 EKRTKTFGSNRKILRISTPTIE 182 (557)
T ss_pred HHHHhhhccCcEEEEeCCCCCC
Confidence 33221 133455566666544
No 381
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.77 E-value=0.49 Score=48.18 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=27.3
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
....+++||||+|.|... -...+...++.-++.+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457889999999988654 3334455555556677777655
No 382
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.34 Score=49.25 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCC
Q 016712 93 SSKDEGLDISKLDISQDIVAALARR--GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (384)
Q Consensus 93 ~~~~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 170 (384)
.......+|+++|=-...+..|.++ .+.+|-.++.--+ .--+.+|+.||+|+|||.
T Consensus 181 ~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~------------------- 238 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTS------------------- 238 (802)
T ss_pred CCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHH-------------------
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
||+-+..++.--+-.+....+.+|.+-..+ +++..++.+..-.-..+ |+
T Consensus 239 --------------lA~AiAgel~vPf~~isApeivSGvSGESE---------------kkiRelF~~A~~~aPci--vF 287 (802)
T KOG0733|consen 239 --------------LANAIAGELGVPFLSISAPEIVSGVSGESE---------------KKIRELFDQAKSNAPCI--VF 287 (802)
T ss_pred --------------HHHHHhhhcCCceEeecchhhhcccCcccH---------------HHHHHHHHHHhccCCeE--EE
Q ss_pred EeCccccc---CCChHHHHHHHHHHC-----------CCCCcEEEEEccC-ChhHHHHHHHhcCCCeEEEe
Q 016712 251 LDEADQML---SVGFAEDVEVILERL-----------PQNRQSMMFSATM-PPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 251 iDEah~~~---~~~~~~~~~~il~~l-----------~~~~q~l~~SAT~-~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||+|.+. +++-...-..|..+| .....+++..||- |+.+..-+++--+-...|.+
T Consensus 288 iDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l 358 (802)
T KOG0733|consen 288 IDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICL 358 (802)
T ss_pred eecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeee
No 383
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.72 E-value=0.89 Score=47.20 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~l 155 (384)
+.+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999996533
No 384
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.49 Score=45.05 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
..+|||...+..+. .|+ -.++.||.|.||+..+ ..+.+.+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~l 49 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRAL 49 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHH
Confidence 36788888887765 343 5899999999999755 3333444
No 385
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.48 Score=49.18 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=24.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
...+++||||+|+|....|. .+.+.++.-+.++.+|+.+ |-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T-td~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT-TDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE-CCc
Confidence 46789999999998765332 2333333334455565544 433
No 386
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.62 E-value=1.3 Score=38.41 Aligned_cols=142 Identities=22% Similarity=0.200 Sum_probs=74.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH-HHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
++|-...|-|||.+++=-++..+ +.|.++.|+-=.+-=...= ...+..+...+....+..+.....+...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~---------GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~ 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL---------GHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDRE 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh---------cCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcH
Confidence 66778889999999887777776 5577887775222111110 1222222111211111111000000000
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.|+ ..+...+.... ..+.-..+++||+||....+..++ ..++..+++.-|.+..+|+.--..|+.+.+++.
T Consensus 102 ----~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 102 ----ADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred ----HHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 011 11111111111 111223689999999998887764 356677777767777777766667888777765
Q ss_pred H
Q 016712 296 K 296 (384)
Q Consensus 296 ~ 296 (384)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 4
No 387
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=0.65 Score=45.18 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
....+++||||+|.|... -...+-+.++.-+.++.+|++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 356789999999988654 334455555554555656665554
No 388
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.56 E-value=1.8 Score=41.44 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=63.7
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC-CEEEEEecCHHHHHHH----HHHHHHhCCC-CceEEE-ECCCChH
Q 016712 140 IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN-PLCLVLAPTRELAKQV----EKEFHESAPS-LDTICV-YGGTPIS 212 (384)
Q Consensus 140 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~-~~~lvl~Pt~~La~q~----~~~~~~~~~~-~~~~~~-~g~~~~~ 212 (384)
++.++.|+|||.+..+.++..+.. ..+ ..+++. ++..-+.+. ...+....+. +..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~-------~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT-------RPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS-------SSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhh-------CCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE-
Confidence 578899999999887777776654 222 445555 665555543 2333344333 221111 001000
Q ss_pred HHHHHHhcCCCEEEECchhH--HHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccC--Ch
Q 016712 213 HQMRALDYGVDAVVGTPGRV--IDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATM--PP 288 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l--~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~--~~ 288 (384)
.+.+|..|.+.+-+.- ..-+. -..++++++||+-.+.+..+...+........ ....+.+|.|+ ..
T Consensus 72 ----~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 72 ----ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGG 141 (384)
T ss_dssp ----EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSS
T ss_pred ----EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCC
Confidence 0134556666663321 11222 14678999999987765534333333333222 22222444433 33
Q ss_pred hHHHHHHHhcCCC
Q 016712 289 WIRSLTNKYLKNP 301 (384)
Q Consensus 289 ~~~~~~~~~l~~~ 301 (384)
....+......+.
T Consensus 142 ~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 142 WFYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHHCTS
T ss_pred ceeeeeehhhcCC
Confidence 4556666666555
No 389
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.56 E-value=0.34 Score=49.88 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~l 155 (384)
+.+|+.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999996533
No 390
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.52 E-value=0.7 Score=49.36 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=30.9
Q ss_pred CCCCccCCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-....++.+.++ .+....|.....+ .+..++.+++.||+|+|||...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL-GIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc-CCCCCceEEEECCCCCChHHHH
Confidence 346677776555555555442 1111111111111 1234578999999999999853
No 391
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.52 E-value=1.8 Score=39.91 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
|.-+++.|++|+|||...+--+.+.+ ..+..++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a---------~~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA---------SRGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---------hCCCcEEEEEe
Confidence 45689999999999996544444433 13566888873
No 392
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.46 E-value=0.06 Score=52.78 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=38.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+++++|+||+|||.++++|-+... +..++|+-|--++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----------~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----------CCCEEEEccchhHHHHHHHHHHHcC
Confidence 478999999999999988876432 3458999999999987776666543
No 393
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=1 Score=46.96 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
.+.+-+++||||+|.|.... ...+...++.-+...-+|+.+ |- ...+..........+.+.
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t-~~---~~kLl~TI~SRc~~vef~ 184 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT-TE---LHKIPATIASRCQRFNFK 184 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CC---hhhhhHHHHhhceEEecC
Confidence 35677899999999986532 223333344333344444444 32 234444444344455543
No 394
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.42 E-value=0.65 Score=47.88 Aligned_cols=20 Identities=35% Similarity=0.258 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp 156 (384)
+-.|++||.|+|||.++-+-
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34789999999999876443
No 395
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.40 E-value=0.77 Score=45.11 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=26.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
....+++||||+|+|... ....+-+.++.-+++..+|+ ++|-+..
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL-~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLL-CAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEE-EECChHH
Confidence 356789999999998654 23334444444344544444 4443433
No 396
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.39 E-value=1.2 Score=46.60 Aligned_cols=177 Identities=16% Similarity=0.222 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 104 LDISQDIVAALARR---GISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 104 l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
+-+-+.+.+.++-. |+..+++--.+.+.... .|-.+|+.-..|-|||+-. +....-++.+ ...+.||+
T Consensus 245 iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQV-isF~diflRh------T~AKtVL~ 317 (1387)
T KOG1016|consen 245 IFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQV-ISFSDIFLRH------TKAKTVLV 317 (1387)
T ss_pred eeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEE-eehhHHHhhc------CccceEEE
Confidence 34556666666543 55556666666665544 3557899999999999832 2222222221 34678999
Q ss_pred EecCHHHHHHHHHHHHHhCCC-----------CceEEEECCCChHH----HHHHHhcCCCEEEECchhHHHHHHc-----
Q 016712 179 LAPTRELAKQVEKEFHESAPS-----------LDTICVYGGTPISH----QMRALDYGVDAVVGTPGRVIDLIKR----- 238 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~-----------~~~~~~~g~~~~~~----~~~~~~~~~~IlV~Tp~~l~~~l~~----- 238 (384)
|+|-..|- -|+.+|..+.+. +.+.++..+..... .+..+...-.|+..-.+.+.-+...
T Consensus 318 ivPiNTlQ-NWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~ 396 (1387)
T KOG1016|consen 318 IVPINTLQ-NWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKK 396 (1387)
T ss_pred EEehHHHH-HHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhccccc
Confidence 99988774 478888776543 33444544443322 2333444456777777765333221
Q ss_pred c-------C-----CC-------------------CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 239 N-------A-----LN-------------------LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 239 ~-------~-----~~-------------------~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
+ . +. -..-++||.||-|++-.. ...+...++.++..+++++....+.
T Consensus 397 grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~--~A~iS~aLk~IrtrRRiVLTGYPLQ 474 (1387)
T KOG1016|consen 397 GRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNI--TAEISMALKAIRTRRRIVLTGYPLQ 474 (1387)
T ss_pred CCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccc--hHHHHHHHHHhhhceeEEEeccccc
Confidence 0 0 00 122478999999998664 3455666777777777777655555
Q ss_pred hhH
Q 016712 288 PWI 290 (384)
Q Consensus 288 ~~~ 290 (384)
+.+
T Consensus 475 NNL 477 (1387)
T KOG1016|consen 475 NNL 477 (1387)
T ss_pred cch
Confidence 543
No 397
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.35 Score=50.05 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchhHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp 156 (384)
..+|+.||.|+|||.++.+-
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999976443
No 398
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.3 Score=49.17 Aligned_cols=18 Identities=39% Similarity=0.335 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~l 155 (384)
.+|+.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986533
No 399
>PRK09354 recA recombinase A; Provisional
Probab=93.33 E-value=0.29 Score=47.00 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
|+-+.+.||+|+|||...+-.+.... ..+..++||..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~---------~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ---------KAGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---------HcCCcEEEECCccchHH
Confidence 45688999999999997655544443 23667888887665554
No 400
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.31 E-value=0.11 Score=46.91 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.2
Q ss_pred EEEEccCCCchhHH
Q 016712 139 MIGRARTGTGKTLA 152 (384)
Q Consensus 139 ~li~a~TGsGKT~~ 152 (384)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 401
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.24 E-value=0.32 Score=46.31 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
|.-+.+.||+|+|||..++-.+.... . .+..++|+..-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~-~--------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K--------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCcEEEEcccchhHH
Confidence 45688999999999996644444332 2 3566888865544443
No 402
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.23 E-value=0.12 Score=52.16 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=40.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.++++.||||||||..+++|.+-.. +.-++|.-|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999976321 2258999999999988887777765
No 403
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.06 E-value=0.31 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.6
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+-.|+.++++||+|+|||...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH
Confidence 346788999999999999853
No 404
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=0.74 Score=45.33 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=15.6
Q ss_pred cEEEEccCCCchhHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIP 156 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp 156 (384)
.+|+.||.|+|||.++..-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999976443
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.88 E-value=0.24 Score=42.95 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~SA 284 (384)
.+-+++++||...-++......+...+..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56689999999998887666666666666533 366666544
No 406
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.87 E-value=0.49 Score=45.42 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+|||...|..+. +|+ -.++.||.|.||+..+. .....+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~L 48 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWL 48 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHH
Confidence 5788888887754 343 57899999999998653 333444
No 407
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.7 Score=48.65 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=23.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
....+++||||+|.|... -...+...++.-+..+.+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 457789999999987643 2223333344434444444433
No 408
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.79 E-value=0.44 Score=45.60 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=29.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
++|+.||+|+|||..+-+-+-. ......+-+=+..|..-.+++...|++
T Consensus 164 SmIlWGppG~GKTtlArlia~t---------sk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAST---------SKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhh---------cCCCceEEEEEeccccchHHHHHHHHH
Confidence 7999999999999854222111 112234556666666666665555544
No 409
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.74 E-value=1.3 Score=47.28 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.|+++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999864
No 410
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.73 E-value=1.2 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=16.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
-.|+.||.|+|||.++.. +.+.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L 62 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCL 62 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhh
Confidence 479999999999996533 33443
No 411
>PRK06321 replicative DNA helicase; Provisional
Probab=92.73 E-value=1.7 Score=43.89 Aligned_cols=146 Identities=15% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEE
Q 016712 129 VLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC 204 (384)
Q Consensus 129 ~i~~i~~g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~ 204 (384)
.++.+..| .=+++.|.+|.|||... +-+...+.. ..+..++|++ ...-..|+..++-....++...-
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafa-l~ia~~~a~-------~~g~~v~~fS-LEMs~~ql~~Rlla~~s~v~~~~ 285 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALA-LNIAENFCF-------QNRLPVGIFS-LEMTVDQLIHRIICSRSEVESKK 285 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHH-HHHHHHHHH-------hcCCeEEEEe-ccCCHHHHHHHHHHhhcCCCHHH
Confidence 34555444 34677899999999854 444444321 1234465554 33334455555443322333221
Q ss_pred E-ECCCChHHHH------HHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC-------hHHH
Q 016712 205 V-YGGTPISHQM------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-------FAED 265 (384)
Q Consensus 205 ~-~g~~~~~~~~------~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-------~~~~ 265 (384)
+ .|..+..+.. ..+. ...+.|- |.+.+...+..-. .-..+++||||=.+.|...+ ...+
T Consensus 286 i~~~~l~~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~~~~r~~e 363 (472)
T PRK06321 286 ISVGDLSGRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNLRNSESRQTE 363 (472)
T ss_pred hhcCCCCHHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcCCCCccCCcchHHHH
Confidence 2 2322222211 1222 2356554 3334433333211 12458999999999875321 2344
Q ss_pred HHHHHHHCC-----CCCcEEEEEcc
Q 016712 266 VEVILERLP-----QNRQSMMFSAT 285 (384)
Q Consensus 266 ~~~il~~l~-----~~~q~l~~SAT 285 (384)
+..|.+.|+ -++.++++|.-
T Consensus 364 i~~Isr~LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 364 ISEISRMLKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeec
Confidence 555555543 27888888775
No 412
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.72 E-value=0.27 Score=46.32 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999854
No 413
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.69 E-value=0.31 Score=46.90 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=41.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 111 VAALARRGISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+..|.+.|+ +++.+.+.+..+. .+++++++|+||+|||... -.++..+ ....+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i---------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV---------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC---------CCCCcEEEECCccee
Confidence 455666675 5677777776654 5679999999999999832 3333332 123457777777676
No 414
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.61 E-value=0.26 Score=49.17 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHH
Q 016712 123 FPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 123 ~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
++.|...+..+++.. =+++.||||||||.. +..++..+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 677877777776654 378899999999985 46666665
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.58 E-value=0.79 Score=42.60 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 016712 137 RDMIGRARTGTGKTLA 152 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~ 152 (384)
+++++.||+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6899999999999984
No 416
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.50 E-value=4.1 Score=38.96 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+.+-+.|+.|.|||. ++-++...... ..-.-++...-+.++.+++..+- |..
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~----------~~k~R~HFh~FM~~vH~~l~~l~---------g~~------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG----------ERKRRLHFHRFMARVHQRLHTLQ---------GQT------- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc----------cccccccHHHHHHHHHHHHHHHc---------CCC-------
Confidence 578999999999997 44444333211 11223677777887777777754 111
Q ss_pred HHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCChh
Q 016712 217 ALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPW 289 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~ 289 (384)
|.+ ..+.+-+ .++.+++++||++ +.|-+=.-.+..+++.| ...+.++..|-|.|+.
T Consensus 118 ------dpl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 118 ------DPL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred ------Ccc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHH
Confidence 111 0011111 3567889999999 55543233344444443 4588899999998876
No 417
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.46 E-value=1.1 Score=46.99 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=59.3
Q ss_pred CCCEEEEEecCH--------HHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTR--------ELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~--------~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.+.+++|++|+. .-+.++++.+.+.+++.++..++|+.+..+....+ .+ ..+|+|+| +.+ ..
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT-----~vi-e~ 520 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT-----TVI-EV 520 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC-----cee-ec
Confidence 367899999976 34556777777777788899999998765544333 33 48999999 433 35
Q ss_pred CCCCCCccEEEEeCccc
Q 016712 240 ALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~ 256 (384)
.+++.++++||+..+++
T Consensus 521 GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 521 GVDVPNATVMVIEDAER 537 (630)
T ss_pred CcccCCCcEEEEeCCCc
Confidence 77899999999998886
No 418
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.37 E-value=0.17 Score=52.42 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=44.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~ 205 (384)
.++++.||||||||..+++|-+... +.-++|+=|--|+........++.+ .+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~G--~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQG--QKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHCC--CeEEEE
Confidence 5799999999999999999988653 3449999999999988887777654 344443
No 419
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.33 E-value=0.37 Score=45.93 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=29.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
|+-+.+.||+|+|||..++-.+.... . .+..++||..-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~-~--------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K--------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCCEEEECccccHHH
Confidence 45688999999999986644444433 2 3667888887655543
No 420
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.33 E-value=0.79 Score=49.77 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.+.++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999865
No 421
>PHA00012 I assembly protein
Probab=92.31 E-value=1.6 Score=41.37 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCCccEEEEeCcccccCC-ChH----HHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHh
Q 016712 243 LSEVQFVVLDEADQMLSV-GFA----EDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~-~~~----~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
..+-.++||||||..+.. +++ ..+.+.+...+ ....++++|-.+. .+...++..
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR~l 138 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAREA 138 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHHHh
Confidence 356789999999998753 122 33444444433 3677888877643 444444433
No 422
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.30 E-value=0.81 Score=46.07 Aligned_cols=73 Identities=14% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHh---c-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALD---Y-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
..+.++||.|-|+.-|.++.+.++... +++.+++|+.+..+....+. + .+.|+|+| +.. .+.++++++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-----dVA-aRGLDi~dV 410 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG--WPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-----DVA-ARGLDVPDV 410 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC--cceeeecccccHHHHHHHHHhcccCCcceEEEc-----ccc-cccCCCccc
Confidence 456789999999999999999998864 68899999988777665554 2 48999999 433 356778888
Q ss_pred cEEEE
Q 016712 247 QFVVL 251 (384)
Q Consensus 247 ~~vVi 251 (384)
++||-
T Consensus 411 ~lVIn 415 (519)
T KOG0331|consen 411 DLVIN 415 (519)
T ss_pred cEEEe
Confidence 88874
No 423
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.29 E-value=0.67 Score=49.81 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.22 E-value=0.83 Score=49.65 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.+.++.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999865
No 425
>PRK05595 replicative DNA helicase; Provisional
Probab=92.19 E-value=0.47 Score=47.51 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=68.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
.=+++.|.||.|||... +-+...+.. ..|..++|+.. ..-..|+..++-....++...-+..+.-...+..
T Consensus 202 ~liviaarpg~GKT~~a-l~ia~~~a~-------~~g~~vl~fSl-Ems~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 202 DMILIAARPSMGKTTFA-LNIAEYAAL-------REGKSVAIFSL-EMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred cEEEEEecCCCChHHHH-HHHHHHHHH-------HcCCcEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHH
Confidence 34677899999999854 444333211 12455777654 3334455555444332333222222211111111
Q ss_pred HHh------cCCCEEEE-C----chhHHHHHHccCCCCCCccEEEEeCcccccCCC----hHHHHHHHHHHCC-----CC
Q 016712 217 ALD------YGVDAVVG-T----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG----FAEDVEVILERLP-----QN 276 (384)
Q Consensus 217 ~~~------~~~~IlV~-T----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~----~~~~~~~il~~l~-----~~ 276 (384)
.+. ....+.|- + +..+...+..-.. -.++++||||=.|.|...+ ....+..+.+.++ -+
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~ 351 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEME 351 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 111 12344443 2 2333333332211 1358999999999886332 2234555544442 27
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
+.++++|..
T Consensus 352 i~vi~lsQL 360 (444)
T PRK05595 352 CPVIALSQL 360 (444)
T ss_pred CeEEEeecc
Confidence 888888765
No 426
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.15 E-value=1.1 Score=40.17 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||...+--+...+ ..+..++|+.- .+-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~---------~~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGL---------KNGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---------hCCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 45789999999999985443444433 13556777765 445677777777765
No 427
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.09 E-value=0.37 Score=49.30 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=25.1
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
+++-+++|+||+-.-+|......+.+.+..+.+++-+|+.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5566788888888777765555665555555444444443
No 428
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.08 E-value=0.93 Score=44.62 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHH-cCCC--CCcHHHH-----HHHHHHhCCCcEEEEccCCCchhHHHH
Q 016712 108 QDIVAALAR-RGIS--KLFPIQK-----AVLEPAMQGRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 108 ~~l~~~l~~-~g~~--~~~~~Q~-----~~i~~i~~g~d~li~a~TGsGKT~~~~ 154 (384)
++|++.|-. .||. .++.-|+ .+++-+.++.|++..||+|+|||..|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 467777766 5775 2232221 112556677899999999999998764
No 429
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.06 E-value=0.71 Score=40.51 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=24.7
Q ss_pred CccEEEEeCcccccCCC-h-HHHHH---HHHHHCCC-CCcEEEEEccCChhHHHHHHH
Q 016712 245 EVQFVVLDEADQMLSVG-F-AEDVE---VILERLPQ-NRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~-~-~~~~~---~il~~l~~-~~q~l~~SAT~~~~~~~~~~~ 296 (384)
.=.++||||||.+.... . ..... ..+...+. ...++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 45689999999887543 2 12222 33333333 56777777764 334444443
No 430
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.06 E-value=0.53 Score=43.62 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHHcCCCCCcHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
|.+.|+ .+.|.+.+..++. +..++++|+||||||.. +..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 455564 5566666665543 34689999999999984 34455554
No 431
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.05 E-value=1.1 Score=43.90 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=68.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
-.|..+++.|+||+||++.+.. ++.+.... ..+|.+-|=|- ++.+... .. ++| +..-+.++|....+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~~--iH~~s~r~-----~~~PFI~~NCa--~~~en~~-~~-eLF-G~~kGaftGa~~~k~ 166 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARL--IHALSARR-----AEAPFIAFNCA--AYSENLQ-EA-ELF-GHEKGAFTGAQGGKA 166 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHH--HHHhhhcc-----cCCCEEEEEHH--HhCcCHH-HH-HHh-ccccceeecccCCcC
Confidence 3678999999999999996532 22222110 23444333221 1111111 11 134 344455555221111
Q ss_pred HHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH-----C----CCCCcEEEEEc
Q 016712 214 QMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----L----PQNRQSMMFSA 284 (384)
Q Consensus 214 ~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~-----l----~~~~q~l~~SA 284 (384)
+.+...+=+.+.+||+|++.-.+ ...+-.+++. + +....+-+.+|
T Consensus 167 -------------------------Glfe~A~GGtLfLDEI~~LP~~~-Q~kLl~~le~g~~~rvG~~~~~~~dVRli~A 220 (403)
T COG1221 167 -------------------------GLFEQANGGTLFLDEIHRLPPEG-QEKLLRVLEEGEYRRVGGSQPRPVDVRLICA 220 (403)
T ss_pred -------------------------chheecCCCEEehhhhhhCCHhH-HHHHHHHHHcCceEecCCCCCcCCCceeeec
Confidence 11223345679999999987653 2223333333 1 12455666778
Q ss_pred cCChhHHHHHH--Hhc--CCCeEEEecC
Q 016712 285 TMPPWIRSLTN--KYL--KNPLTVDLVG 308 (384)
Q Consensus 285 T~~~~~~~~~~--~~l--~~~~~i~~~~ 308 (384)
|--+--..+.. .+. ..+..|.+++
T Consensus 221 T~~~l~~~~~~g~dl~~rl~~~~I~LPp 248 (403)
T COG1221 221 TTEDLEEAVLAGADLTRRLNILTITLPP 248 (403)
T ss_pred cccCHHHHHHhhcchhhhhcCceecCCC
Confidence 86554444444 333 3567777654
No 432
>PRK07773 replicative DNA helicase; Validated
Probab=91.99 E-value=0.95 Score=49.38 Aligned_cols=137 Identities=14% Similarity=0.061 Sum_probs=67.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISHQMR 216 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 216 (384)
=+++.|.+|.|||..+ +-+...+.. ..+..++|++ ...-..|+..++.....++...-+ .|.... .+..
T Consensus 219 livIagrPg~GKT~fa-l~ia~~~a~-------~~~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~i~~g~l~~-~~~~ 288 (886)
T PRK07773 219 LIIVAARPSMGKTTFG-LDFARNCAI-------RHRLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSDMRSGRMSD-DDWT 288 (886)
T ss_pred EEEEEeCCCCCcHHHH-HHHHHHHHH-------hcCCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHHHhcCCCCH-HHHH
Confidence 4788999999999854 444333321 1234455554 444455666665554333332222 222221 1111
Q ss_pred HH------hcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC----ChHHHHHHHHHHCC-----CC
Q 016712 217 AL------DYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV----GFAEDVEVILERLP-----QN 276 (384)
Q Consensus 217 ~~------~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~il~~l~-----~~ 276 (384)
.+ .....+.|. |++.+...+..-.- -.++++||||=.+.|... .....+..|.+.|+ -+
T Consensus 289 ~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ 367 (886)
T PRK07773 289 RLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELE 367 (886)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 11 112445552 34444333322111 135899999999977532 13334555544442 25
Q ss_pred CcEEEEEcc
Q 016712 277 RQSMMFSAT 285 (384)
Q Consensus 277 ~q~l~~SAT 285 (384)
+.++++|-.
T Consensus 368 vpvi~lsQL 376 (886)
T PRK07773 368 VPVVALSQL 376 (886)
T ss_pred CcEEEeccc
Confidence 666666544
No 433
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=3.6 Score=41.53 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-------HhCC-----CcEEEEccCCCchhHHH
Q 016712 103 KLDISQDIVAALARRGISKLFPIQKAVLEP-------AMQG-----RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 103 ~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-------i~~g-----~d~li~a~TGsGKT~~~ 153 (384)
.+|.+++-++.+...|.-...+.-.+.+.. +... ..+++.||.|||||..+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 456777777777776655444444444332 1111 26899999999999743
No 434
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.95 E-value=2.9 Score=42.55 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhCCCCceEEEECCCChH-----HHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 186 AKQVEKEFHESAPSLDTICVYGGTPIS-----HQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
.+++.+.+++.+++.++..++++.... .....+.+ ..+|+|||. ++ ....++.++.+|+|=.+|..+.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~-----~i-~kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQ-----MI-AKGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCc-----cc-ccCCCCCcccEEEEEcCccccc
Confidence 467788899999999988888876432 23444555 489999994 33 4567899999999988997654
Q ss_pred C-ChHH------HHHHHHHHC---CCCCcEEEEEccCChh
Q 016712 260 V-GFAE------DVEVILERL---PQNRQSMMFSATMPPW 289 (384)
Q Consensus 260 ~-~~~~------~~~~il~~l---~~~~q~l~~SAT~~~~ 289 (384)
. .|.. .+..+..+. ....++++.|.++...
T Consensus 345 ~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~ 384 (505)
T TIGR00595 345 SPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHP 384 (505)
T ss_pred CcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCH
Confidence 2 2321 122222222 2345788888877554
No 435
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.94 E-value=0.6 Score=45.45 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=19.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
.+..++++||||||||.. +-.++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 345789999999999984 455555553
No 436
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.92 E-value=1.5 Score=46.48 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=59.3
Q ss_pred CCCEEEEEecCHH--------HHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRE--------LAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~--------La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.+.+++|++|+.+ -+.++++.+.+.++++++..++|+.+..+....+ .+ ..+|+|+| +.+ ..
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT-----~vi-e~ 543 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT-----TVI-EV 543 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC-----cce-ee
Confidence 4678999999643 3566777888777678899999997765544433 33 47999999 443 35
Q ss_pred CCCCCCccEEEEeCccc
Q 016712 240 ALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~ 256 (384)
.+++.++++||+..+++
T Consensus 544 GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 544 GVDVPNATVMVIENAER 560 (681)
T ss_pred CcccCCCcEEEEeCCCC
Confidence 67899999999998886
No 437
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.91 E-value=1.4 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=17.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
+..++.||.|+|||..+ ..+...+
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 35799999999999854 3344444
No 438
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.91 E-value=1.4 Score=44.61 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=82.6
Q ss_pred CCCcHHHHHHHHHHhC------C----CcEEEEccCCCchhHHHH-HHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 120 SKLFPIQKAVLEPAMQ------G----RDMIGRARTGTGKTLAFG-IPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~------g----~d~li~a~TGsGKT~~~~-lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
..+-|+|.-.+-.+.. | +-.+|..|-+-|||.... +.....+... ..+....|++|+.+-+.+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHHH
Confidence 3578999999988772 1 257889999999997543 3333333221 346679999999999999
Q ss_pred HHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc--cCCCCCCccEEEEeCcccccCCChHHHH
Q 016712 189 VEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR--NALNLSEVQFVVLDEADQMLSVGFAEDV 266 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~l~~vViDEah~~~~~~~~~~~ 266 (384)
.+..++......+ + .......-.....|...--...+..+.. +..+-.+..+.|+||.|...+.+ ..+
T Consensus 134 ~F~~ar~mv~~~~------~--l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 134 SFNPARDMVKRDD------D--LRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred hhHHHHHHHHhCc------c--hhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 8888777543222 0 0000000000011222221112222222 22334467799999999855531 333
Q ss_pred HHHHHHC--CCCCcEEEEEc
Q 016712 267 EVILERL--PQNRQSMMFSA 284 (384)
Q Consensus 267 ~~il~~l--~~~~q~l~~SA 284 (384)
..+..-+ .++.+++..|-
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 4443333 34666666654
No 439
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=1.6 Score=43.98 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=34.5
Q ss_pred ccEEEEeCcccccCCC-------hHHHHHHHHHHC---CCCCcEEEEEccC-ChhHHHHHHHhcCCCeEEEe
Q 016712 246 VQFVVLDEADQMLSVG-------FAEDVEVILERL---PQNRQSMMFSATM-PPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 246 l~~vViDEah~~~~~~-------~~~~~~~il~~l---~~~~q~l~~SAT~-~~~~~~~~~~~l~~~~~i~~ 306 (384)
-..|.|||.|.+.... ....+..++..+ .++--+|++.||- |..+..-+.+--+-...|.+
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTV 468 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEec
Confidence 3468899999887542 122344444443 4577899999995 33333333333333444444
No 440
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.89 E-value=1.8 Score=47.04 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHh----CC--CcEEEEccCCCchhHHH
Q 016712 126 QKAVLEPAM----QG--RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 126 Q~~~i~~i~----~g--~d~li~a~TGsGKT~~~ 153 (384)
|..-|..+. .+ .+.++.||+|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555443 32 48999999999999865
No 441
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=91.83 E-value=0.25 Score=39.64 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+..+.+...|...+..+..+||++++.+|..++++|.+++..|+
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~il 82 (131)
T cd00079 39 KMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVL 82 (131)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 44555666666678899999999999999999999999997653
No 442
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.78 E-value=0.45 Score=45.20 Aligned_cols=62 Identities=27% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHHHHcCCCCCcHHHHHHH-HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 112 AALARRGISKLFPIQKAVL-EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i-~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
..|.+.| .+++.|..-+ -.+..+++++++|+||||||. ++.+++..+ ....+.+.+--|.++
T Consensus 120 ~~l~~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I---------p~~~rivtIEdt~E~ 182 (312)
T COG0630 120 EDLIEYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI---------PPEERIVTIEDTPEL 182 (312)
T ss_pred HHHhhcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC---------CchhcEEEEeccccc
Confidence 3344444 4677775554 456678999999999999998 456666555 234567777777766
No 443
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.77 E-value=0.57 Score=48.44 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=27.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMM 281 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~ 281 (384)
+++-.++|+||+-.-+|..-...+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 556688999999988887666666666665555544444
No 444
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.71 E-value=0.73 Score=48.18 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=38.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH--HHHHHHHHHHHhCC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE--LAKQVEKEFHESAP 198 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~--La~q~~~~~~~~~~ 198 (384)
.++++.|+||+|||..+..-+.+.+ . .+..++++=|--. |...+...++..+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i-~--------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDI-R--------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 5899999999999987644444444 2 2567888888754 77777777777653
No 445
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.70 E-value=0.69 Score=46.84 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 128 AVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 128 ~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..++.++.| .-+++.||+|+|||...+--+...+ ..|.+++|++ ..|-..|+.+.++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---------~~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---------ANKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345666654 5789999999999996544444333 2356788877 7777888888888775
No 446
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.68 E-value=0.88 Score=45.23 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 109 DIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
.+++.+++ .+-.+...|.++.-..-.|+. .|.|=.|||||..-.+-+.+.- ...+.-+++|-+-|+.|+++
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh-------~knPd~~I~~Tfftk~L~s~ 221 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELH-------SKNPDSRIAFTFFTKILAST 221 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHh-------cCCCCceEEEEeehHHHHHH
Confidence 45666654 344567788877655555665 7889999999996433332211 23456789999999999999
Q ss_pred HHHHHHHhC
Q 016712 189 VEKEFHESA 197 (384)
Q Consensus 189 ~~~~~~~~~ 197 (384)
+.....+++
T Consensus 222 ~r~lv~~F~ 230 (660)
T COG3972 222 MRTLVPEFF 230 (660)
T ss_pred HHHHHHHHH
Confidence 887776654
No 447
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.60 E-value=0.17 Score=46.96 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 125 IQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 125 ~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
...+.+.. +..+.+++++|+||||||.. +..++..+.. ...+++++-.+.|+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchH-HHHHhhhccc--------cccceEEeccccce
Confidence 33334433 34578999999999999984 3555555422 13567888777766
No 448
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.56 E-value=1.4 Score=44.69 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHHHH
Q 016712 139 MIGRARTGTGKTLAFGI 155 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~l 155 (384)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986543
No 449
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.53 E-value=0.65 Score=43.00 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|-|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 37999999999999854
No 450
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.51 E-value=2.3 Score=41.58 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=20.0
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
+-.|+..+|.||.|+|||... --+...+
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHH
Confidence 346789999999999999743 2244443
No 451
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=2.1 Score=40.71 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=35.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGD 309 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 309 (384)
....+++|||++|.|... -...+-++++.-+ +..+|+.|.. + ..+..........+.+.+-
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~-~---~~Ll~TI~SRcq~i~f~~l 182 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS-P---ESLLPTIVSRCQIIPFYRL 182 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC-h---HhCcHHHHhhceEEecCCC
Confidence 357899999999998654 3444555555544 6656555543 2 3344443334455655443
No 452
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.40 E-value=2.4 Score=44.24 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+=+++|||.|-|||..+
T Consensus 327 KilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLA 343 (877)
T ss_pred ceEEeecCCCCChhHHH
Confidence 35899999999999854
No 453
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.37 E-value=1.7 Score=41.65 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.9
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
....+++||||+|.|... -...+.+.++.-++++.+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 456789999999998654 33344444554445565665443
No 454
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.31 E-value=0.3 Score=45.07 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=36.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
.|+.+++.|++|+|||...+--+...+ . .|-.++|++ +.+...++.+.+..++-+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~-~--------~ge~vlyvs-~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA-R--------EGEPVLYVS-TEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH-h--------cCCcEEEEE-ecCCHHHHHHHHHHcCCC
Confidence 457899999999999985433333332 2 244566665 566777788888775543
No 455
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.30 E-value=9.6 Score=36.28 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=74.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec--CHHHHHHHHHHHHHhCCCCceEEE-ECCCChHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP--TRELAKQVEKEFHESAPSLDTICV-YGGTPISHQ 214 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P--t~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~~ 214 (384)
-++++|-.|+|||....=- .+.+. +.|.++++.+- .|+=|.++.+.+.+.. +++++.. +|+.+..--
T Consensus 141 Vil~vGVNG~GKTTTIaKL-A~~l~--------~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKL-AKYLK--------QQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEEecCCCchHhHHHHH-HHHHH--------HCCCeEEEEecchHHHHHHHHHHHHHHHh-CCeEEccCCCCCcHHHH
Confidence 3788999999999864222 22222 34666776664 3566666666655543 2333221 232222111
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCC------cEEEEEccCC
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNR------QSMMFSATMP 287 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~------q~l~~SAT~~ 287 (384)
.+-+... .-+++++|++|=|-||-.. +.-.++++|.+-+.+.. -++.+=||.-
T Consensus 211 ------------------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 211 ------------------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ------------------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 1222211 1346777888888777644 35667777777665533 3455589988
Q ss_pred hhHHHHHHHhc
Q 016712 288 PWIRSLTNKYL 298 (384)
Q Consensus 288 ~~~~~~~~~~l 298 (384)
.+-.+.++.|-
T Consensus 271 qnal~QAk~F~ 281 (340)
T COG0552 271 QNALSQAKIFN 281 (340)
T ss_pred hhHHHHHHHHH
Confidence 88777777664
No 456
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=0.13 Score=48.11 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.|+++.||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 48999999999999855
No 457
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.19 E-value=2.1 Score=44.37 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=58.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++|+..++++++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+| +.+. ..+++.+++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g--~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~V~ 327 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHG--YRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDGVK 327 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccCCC
Confidence 46689999999999999999998764 6888899987765544433 33 48999999 5554 566889999
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||.-+..
T Consensus 328 ~VInyd~P 335 (572)
T PRK04537 328 YVYNYDLP 335 (572)
T ss_pred EEEEcCCC
Confidence 98875543
No 458
>PRK13764 ATPase; Provisional
Probab=91.18 E-value=0.54 Score=48.53 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=20.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+++++++|+||||||.. +-.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999984 45555555
No 459
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.16 E-value=0.13 Score=44.27 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=29.6
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCC--CCCccEEEEeCcccccCC
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALN--LSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~--~~~l~~vViDEah~~~~~ 260 (384)
.+.....+||||++..-|++-.....+. ..+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3444556899999988776654333221 123468999999998654
No 460
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=91.06 E-value=0.57 Score=44.44 Aligned_cols=45 Identities=24% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIK 163 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 163 (384)
+.--|+-|..=+..+.+..=++..||-|+|||+.+...+..++..
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~ 170 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA 170 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh
Confidence 444689999988888876668889999999999877777776643
No 461
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=91.05 E-value=1 Score=46.86 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH--HHHHHHHHHHHHhCC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR--ELAKQVEKEFHESAP 198 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~--~La~q~~~~~~~~~~ 198 (384)
..+.+|.|+||+|||..+.+-+.+.+. .+..++++=|-. ++...++..++..+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~---------~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIR---------RGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 358999999999999987766655552 356788888866 567777777777654
No 462
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.02 E-value=1.7 Score=47.09 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|.|||..+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 48999999999999965
No 463
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.00 E-value=2.6 Score=40.90 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||.|+|||..+
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999854
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.97 E-value=0.76 Score=49.09 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=28.8
Q ss_pred CCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 98 GLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...|++++-.+.+.+.|.+. .+..+.-++.. -+...+.+++.||+|+|||+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~---g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM---GIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEECCCCCCHHHHH
Confidence 34566666666666666542 11111111100 0112356999999999999854
No 465
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.91 E-value=1.1 Score=46.76 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
..+|+.||.|+|||..+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 457999999999999653
No 466
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.90 E-value=5.5 Score=38.59 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHHhCCCc------EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec-----CHHHHHHHH
Q 016712 122 LFPIQKAVLEPAMQGRD------MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP-----TRELAKQVE 190 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d------~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P-----t~~La~q~~ 190 (384)
.+..|...+..++..++ +++.|.+|+|||.. +...+... +-..+++.+ .+.|-+++.
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~-----------n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL-----------NLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc-----------CCcceeeehHHhccHHHHHHHHH
Confidence 57889999888887654 48899999999984 23333332 222455544 334444444
Q ss_pred HHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc--CCCCCCccEEEEeCcccccCCC--hHHHH
Q 016712 191 KEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN--ALNLSEVQFVVLDEADQMLSVG--FAEDV 266 (384)
Q Consensus 191 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~l~~vViDEah~~~~~~--~~~~~ 266 (384)
..... .+ ..|.........+ ..+...+.++ ....+..-++|+|-+|.+-|.+ ....+
T Consensus 78 ~~~~~-~d-------~dg~~~~~~~en~-----------~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l 138 (438)
T KOG2543|consen 78 NKSQL-AD-------KDGDKVEGDAENF-----------SDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL 138 (438)
T ss_pred HHhcc-CC-------CchhhhhhHHHHH-----------HHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH
Confidence 33320 00 0000000000111 1122333331 1122345689999999988765 33445
Q ss_pred HHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 267 EVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 267 ~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
-.+-..++.+.-.|.+|+++++... ..+....+++.+.++.
T Consensus 139 ~~L~el~~~~~i~iils~~~~e~~y-~~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 139 FRLYELLNEPTIVIILSAPSCEKQY-LINTGTLEIVVLHFPQ 179 (438)
T ss_pred HHHHHHhCCCceEEEEeccccHHHh-hcccCCCCceEEecCC
Confidence 5555556666778888999876522 2223445666666643
No 467
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.80 E-value=0.68 Score=39.16 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=25.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV 189 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~ 189 (384)
.++.||.|+|||..|........ + .++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~------------~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL------------P-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc------------C-CeEEECHHHHhhhc
Confidence 47889999999998754433221 1 56777777776664
No 468
>PRK07413 hypothetical protein; Validated
Probab=90.80 E-value=3.2 Score=40.35 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCCccEEEEeCcccccCCChH--HHHHHHHHHCCCCCcEEEEEcc-CChhHHHHHH
Q 016712 243 LSEVQFVVLDEADQMLSVGFA--EDVEVILERLPQNRQSMMFSAT-MPPWIRSLTN 295 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~--~~~~~il~~l~~~~q~l~~SAT-~~~~~~~~~~ 295 (384)
-...++||+||+-..++.++. .++..+++..|.+.-+|+.--. .|+++.+++.
T Consensus 303 ~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~AD 358 (382)
T PRK07413 303 SGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLAS 358 (382)
T ss_pred CCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCc
Confidence 356889999999988888754 4667777777777666665554 6777666654
No 469
>PRK10436 hypothetical protein; Provisional
Probab=90.79 E-value=0.7 Score=46.36 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 114 LARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
|.++|+ .+.|.+.+..+. .+.-++++||||||||... ..++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 445554 566666666554 3456899999999999853 4555555
No 470
>PF12846 AAA_10: AAA-like domain
Probab=90.73 E-value=0.4 Score=44.61 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=29.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.++++.|+||+|||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchHHH
Confidence 578999999999998765 44444433 3566777777655544
No 471
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.73 E-value=0.63 Score=47.06 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCC-C-cEEEEccCCCchhHHHHHHHHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQG-R-DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~g-~-d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.|.+.|+ .+.|.+.+..+... + -++++||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3556664 67777777766543 3 3789999999999853 4445554
No 472
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.70 E-value=1.3 Score=48.15 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.++++||||+|||..+
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999965
No 473
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.53 E-value=5 Score=42.26 Aligned_cols=78 Identities=24% Similarity=0.389 Sum_probs=58.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|.++|+..+..+.+.+.+.+ +++..++|+....+... .+.. ..+|+||| +.+. .++++.+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g--i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~v~ 512 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG--IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEVS 512 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc--cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCCCc
Confidence 47789999999999999999998874 67777888765544332 2333 47899999 4444 567789999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||+-+++..
T Consensus 513 lVvi~Dadif 522 (655)
T TIGR00631 513 LVAILDADKE 522 (655)
T ss_pred EEEEeCcccc
Confidence 9998888763
No 474
>PHA02542 41 41 helicase; Provisional
Probab=90.52 E-value=1.7 Score=43.80 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=27.2
Q ss_pred CccEEEEeCcccccCC-------ChHHHHHHHHHHCCC-----CCcEEEEEcc
Q 016712 245 EVQFVVLDEADQMLSV-------GFAEDVEVILERLPQ-----NRQSMMFSAT 285 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-------~~~~~~~~il~~l~~-----~~q~l~~SAT 285 (384)
.+++||||=.+.|... +....+..|.+.|.. ++.++++|-.
T Consensus 301 ~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQL 353 (473)
T PHA02542 301 KPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQT 353 (473)
T ss_pred CCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEee
Confidence 3889999999977521 234445555554432 7888888776
No 475
>CHL00176 ftsH cell division protein; Validated
Probab=90.51 E-value=1.4 Score=46.08 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999854
No 476
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.34 E-value=0.35 Score=50.69 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=39.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++++||||||||..+++|-+-.. ...++|+=|--|+........++.+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4899999999999999999986542 2358999999999887766665543
No 477
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.23 E-value=2.3 Score=36.84 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=33.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccC--CCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG--RGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.|.-.++.|++|+|||... +.+...+.......+ ...+.+++|+..-.. ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~-~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLA-LQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHH-HHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4556899999999999854 444444432111100 113556888776554 5577777776553
No 478
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=2.7 Score=43.85 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHh--------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM--------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~--------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.+...-.+.++.+. +|+-+.++||+|-|||-+. -. +++.
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-kS--------------------------------IA~A 461 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-KS--------------------------------IARA 461 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-HH--------------------------------HHHH
Confidence 34555555554433 3466888999999999753 22 2222
Q ss_pred HHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH
Q 016712 193 FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER 272 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~ 272 (384)
+.+-| .....||.....+++.-.+ --|=+-||++.+.++.-... =-++.|||+|.+....-+.--..+++.
T Consensus 462 LnRkF----fRfSvGG~tDvAeIkGHRR--TYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g~qGDPasALLEl 532 (906)
T KOG2004|consen 462 LNRKF----FRFSVGGMTDVAEIKGHRR--TYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSGHQGDPASALLEL 532 (906)
T ss_pred hCCce----EEEeccccccHHhhcccce--eeeccCChHHHHHHHhhCCC---CceEEeehhhhhCCCCCCChHHHHHHh
Confidence 22222 1233455443333322211 23345699999999754331 126899999998843334444455555
Q ss_pred C
Q 016712 273 L 273 (384)
Q Consensus 273 l 273 (384)
|
T Consensus 533 L 533 (906)
T KOG2004|consen 533 L 533 (906)
T ss_pred c
Confidence 5
No 479
>PHA02535 P terminase ATPase subunit; Provisional
Probab=90.15 E-value=2.9 Score=42.83 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 104 LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 104 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
-.+++.....|.+.....+.+||...+..-+..+..++.-.=-.|||..|..-++..... .|...++|.|++
T Consensus 121 n~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~--------~G~nqiflSas~ 192 (581)
T PHA02535 121 NDISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL--------TGRNQIFLSASK 192 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh--------cCCceEEECCCH
Confidence 346777888888877778999999988552223555666666789999877666554433 355689999999
Q ss_pred HHHHHHHHHHHHhC
Q 016712 184 ELAKQVEKEFHESA 197 (384)
Q Consensus 184 ~La~q~~~~~~~~~ 197 (384)
+.+.+..+.+..+.
T Consensus 193 ~QA~~f~~yi~~~a 206 (581)
T PHA02535 193 AQAHVFKQYIIAFA 206 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998777766663
No 480
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.13 E-value=0.51 Score=45.74 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+.-++++||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999999843 4444444
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.07 E-value=0.52 Score=41.60 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=23.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
++++||||||||... ..++..+.. ..+.+++.+--..++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~-------~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINK-------NKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhh-------cCCcEEEEEcCCccc
Confidence 689999999999853 444444422 123455665554443
No 482
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.97 E-value=2.8 Score=43.78 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
.+.+.+++||||+|.|... -...+...++..+.+.-+| +.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEE-EEeC
Confidence 3567889999999998654 2334445555544444444 4444
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.88 E-value=0.55 Score=44.53 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..+++++++|+||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 45678999999999999984
No 484
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.87 E-value=0.57 Score=48.34 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=31.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 113 ALARRGISKLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.|.+.|| .+.|.+.+..+.. ..-++++||||||||... ..++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 3566675 5677777766554 346789999999999853 5555555
No 485
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=0.91 Score=47.15 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=72.7
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE-EecCHHHHHHHHHHHHHhCCC--------CceE
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV-LAPTRELAKQVEKEFHESAPS--------LDTI 203 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv-l~Pt~~La~q~~~~~~~~~~~--------~~~~ 203 (384)
+..|+.+-++||.|+|||.+ ..++.++.+ ..++++++ =+|-+++=..+++.--.+-.. +.-.
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~-------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYD-------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcC-------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 44688999999999999985 455566543 12222221 234444433333311111100 1111
Q ss_pred EEECCCChHH--------------HHHHHhcCCCEEEECchhHHHHHHcc-----CCCCCCccEEEEeCcccccCCChHH
Q 016712 204 CVYGGTPISH--------------QMRALDYGVDAVVGTPGRVIDLIKRN-----ALNLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 204 ~~~g~~~~~~--------------~~~~~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~l~~vViDEah~~~~~~~~~ 264 (384)
+.||-....+ ....+.+|.+-.||.-|..+.=-... ..-+++-..+|+|||--.+|..-..
T Consensus 562 I~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~ 641 (716)
T KOG0058|consen 562 IAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEY 641 (716)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHH
Confidence 2233322111 12222334555565554332111100 1125677889999999988877677
Q ss_pred HHHHHHHHCCCCCcEEEEEc
Q 016712 265 DVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 265 ~~~~il~~l~~~~q~l~~SA 284 (384)
.+++.+.++..++ +++.=|
T Consensus 642 lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 642 LVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHHHHhhcCC-eEEEEe
Confidence 7778887776664 444333
No 486
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.86 E-value=1.6 Score=43.75 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+.++|||||+|.|.... ...+...++.-+..+.+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999876432 223344444434455455533
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.83 E-value=1.1 Score=43.44 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHHHHh---CCCcEEEEccCCCchhHHHHHHHHHHH
Q 016712 124 PIQKAVLEPAM---QGRDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 124 ~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
++-..+|+.+. +|...+|.|+.|+|||... .-++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 45556777655 6789999999999999853 3344444
No 488
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.75 E-value=1.2 Score=46.08 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=61.7
Q ss_pred CCCEEEEEecCHH--------HHHHHHHHHHHhCCCCceEEEECCCChHH---HHHHHhc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRE--------LAKQVEKEFHESAPSLDTICVYGGTPISH---QMRALDY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~--------La~q~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.|.|+-||||..+ -|...++.++..++++++..++|.....+ .+..+++ ..+|+|+| ..+ .=
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT-----TVI-EV 545 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT-----TVI-EV 545 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe-----eEE-Ee
Confidence 4889999999775 45677888888889999999999877544 3444455 58999999 222 23
Q ss_pred CCCCCCccEEEEeCccc
Q 016712 240 ALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 240 ~~~~~~l~~vViDEah~ 256 (384)
.++..+-.++||..|++
T Consensus 546 GVdVPnATvMVIe~AER 562 (677)
T COG1200 546 GVDVPNATVMVIENAER 562 (677)
T ss_pred cccCCCCeEEEEechhh
Confidence 56789999999999999
No 489
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.71 E-value=1.9 Score=43.11 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
..+.++|.+.++.-|.-+.+.|.+.+ +++..++|+....+....+ .. ..+|+||| +.. ...++..++.
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-----DvA-gRGIDIpnVS 587 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAG--YKVTTLHGGKSQEQRENALADFREGTGDILVAT-----DVA-GRGIDIPNVS 587 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhcc--ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEe-----ccc-ccCCCCCccc
Confidence 36779999999999999999999987 8899999998876665544 33 48999999 433 3467788888
Q ss_pred EEE
Q 016712 248 FVV 250 (384)
Q Consensus 248 ~vV 250 (384)
+||
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 775
No 490
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=89.55 E-value=5.7 Score=42.73 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=20.3
Q ss_pred CchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 228 TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 228 Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.|+++...+..... .-.++++||+|.+...
T Consensus 402 ~~G~~~~~l~~~~~---~~~villDEidk~~~~ 431 (784)
T PRK10787 402 MPGKLIQKMAKVGV---KNPLFLLDEIDKMSSD 431 (784)
T ss_pred CCcHHHHHHHhcCC---CCCEEEEEChhhcccc
Confidence 57777776654332 1137999999998765
No 491
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.50 E-value=0.38 Score=44.50 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHhCCCcEEEEccCCCchhHHH
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+..+..|+++++.||+|+|||..+
T Consensus 15 l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 15 LRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344567899999999999999975
No 492
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=89.43 E-value=1.3 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
..+-+++++||--.-+|......+..+++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3466789999999888876777777777776
No 493
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=0.88 Score=49.45 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=37.6
Q ss_pred CCCccCCCCCHHHHHHHHHcCCC-CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 98 GLDISKLDISQDIVAALARRGIS-KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...|++.|....++..|+++-+. -++|-+..-+ .+-.-+-++++||.|+|||+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 45688888888899999987432 2344333322 1233467999999999999854
No 494
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.25 E-value=1.3 Score=39.60 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|.-+.+.|++|+|||...+.-+....... . -.+.+..++|+..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~--~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-E--LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-c--cCCCcceEEEEecCC
Confidence 45689999999999996654443332110 0 001125678877643
No 495
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=88.85 E-value=2.6 Score=40.83 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
.+.++||+++|+.-++.+++.+++.+.++.+..++|........+.. ..+|+|+| +.+.+ +++++.. .||+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaT-----dv~~r-GiDi~~~-~vi~ 341 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--QFDILLGT-----STVDV-GVDFKRD-WLIF 341 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--cCCEEEEe-----cHHhc-ccCCCCc-eEEE
Confidence 46689999999999999999999875456677777776655443332 47999999 55543 4555554 5666
Q ss_pred e
Q 016712 252 D 252 (384)
Q Consensus 252 D 252 (384)
|
T Consensus 342 ~ 342 (357)
T TIGR03158 342 S 342 (357)
T ss_pred C
Confidence 4
No 496
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.84 E-value=0.42 Score=50.00 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=36.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
.++++.||||||||..+++|.+... +..++|+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-----------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-----------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-----------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987532 345899999999976554443
No 497
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.69 E-value=1.8 Score=38.39 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=23.3
Q ss_pred cEEEEeCccccc-CC----ChHHHHHHHHHHCCC-CCcEEEEEccC
Q 016712 247 QFVVLDEADQML-SV----GFAEDVEVILERLPQ-NRQSMMFSATM 286 (384)
Q Consensus 247 ~~vViDEah~~~-~~----~~~~~~~~il~~l~~-~~q~l~~SAT~ 286 (384)
-+|||||+|.+. .. .+...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999988 21 245556666666332 23344455554
No 498
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.66 E-value=0.6 Score=45.81 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=31.4
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
...+++++.|.||+|||. ++..++..+.. .+.+++|.=|.-+.....+
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~--------~g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA--------RGDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH--------TT-EEEEEEETTHHHHHH-
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH--------cCCEEEEEECCchHHHHhc
Confidence 345799999999999997 55677777654 2556777777766655433
No 499
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.61 E-value=0.74 Score=44.41 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+..++++||||||||... ..++..+.. ..+.+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~-------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK-------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc-------CCCCEEEEEcCChhh
Confidence 4568999999999999853 444444421 123456666555554
No 500
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=88.48 E-value=0.63 Score=48.43 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=41.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV 205 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~ 205 (384)
.++++.||||+|||..+++|-+-.. +.-++|+=|.-|+.......-++.+ +.++.++
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-----------~gS~VV~DpKgE~~~~Ta~~R~~~G-g~~V~vf 268 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-----------GGPLVCLDPSTEVAPMVCEHRRQAG-NRKVIVL 268 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-----------CCCEEEEEChHHHHHHHHHHHHHcC-CCcEEEE
Confidence 5899999999999999999964321 3458999999999876665444443 2445444
Done!