Query 016712
Match_columns 384
No_of_seqs 395 out of 3058
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 18:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.6E-43 8.8E-48 348.7 35.2 286 95-384 52-354 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 7.1E-41 2.4E-45 328.0 31.1 281 96-384 34-330 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 3.6E-40 1.2E-44 323.4 33.7 286 96-384 12-330 (417)
4 3eiq_A Eukaryotic initiation f 100.0 2.7E-39 9.1E-44 316.7 28.0 280 97-384 38-334 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.1E-38 3.9E-43 311.2 31.0 279 96-384 18-312 (400)
6 3fe2_A Probable ATP-dependent 100.0 2.8E-39 9.6E-44 295.1 24.1 214 94-308 24-239 (242)
7 1xti_A Probable ATP-dependent 100.0 4.4E-38 1.5E-42 305.8 32.5 278 99-384 8-304 (391)
8 3iuy_A Probable ATP-dependent 100.0 5.3E-39 1.8E-43 290.4 23.1 212 94-305 14-227 (228)
9 3fht_A ATP-dependent RNA helic 100.0 3.8E-38 1.3E-42 308.2 30.1 278 96-384 22-320 (412)
10 1fuu_A Yeast initiation factor 100.0 6.6E-39 2.3E-43 311.7 22.5 279 97-384 19-313 (394)
11 3pey_A ATP-dependent RNA helic 100.0 1.3E-37 4.4E-42 302.3 30.7 274 99-384 5-297 (395)
12 1vec_A ATP-dependent RNA helic 100.0 6.6E-38 2.3E-42 278.5 25.5 201 98-304 2-205 (206)
13 1hv8_A Putative ATP-dependent 100.0 2.1E-37 7.1E-42 297.9 30.6 273 97-384 4-292 (367)
14 3sqw_A ATP-dependent RNA helic 100.0 4.2E-38 1.4E-42 322.2 27.2 288 95-384 13-345 (579)
15 2gxq_A Heat resistant RNA depe 100.0 1.3E-37 4.3E-42 276.7 24.5 204 100-306 2-205 (207)
16 3i5x_A ATP-dependent RNA helic 100.0 1.1E-37 3.9E-42 317.9 27.5 287 96-384 65-396 (563)
17 3fmp_B ATP-dependent RNA helic 100.0 1E-38 3.5E-43 319.5 18.9 276 98-384 91-387 (479)
18 2oxc_A Probable ATP-dependent 100.0 1.4E-37 4.8E-42 281.6 22.6 204 96-306 21-228 (230)
19 1q0u_A Bstdead; DEAD protein, 100.0 3.7E-38 1.2E-42 283.2 18.3 202 99-306 4-211 (219)
20 3ber_A Probable ATP-dependent 100.0 3.5E-37 1.2E-41 282.5 24.9 203 98-306 42-247 (249)
21 3bor_A Human initiation factor 100.0 1.5E-37 5E-42 282.9 21.4 205 96-306 27-234 (237)
22 3fmo_B ATP-dependent RNA helic 100.0 1.3E-37 4.6E-42 292.9 21.7 202 97-307 90-298 (300)
23 1wrb_A DJVLGB; RNA helicase, D 100.0 1.3E-37 4.3E-42 285.9 20.1 211 97-307 21-240 (253)
24 2pl3_A Probable ATP-dependent 100.0 1E-36 3.6E-41 276.8 25.8 210 95-307 21-233 (236)
25 1qde_A EIF4A, translation init 100.0 1.1E-36 3.7E-41 274.2 22.9 204 97-307 12-217 (224)
26 3ly5_A ATP-dependent RNA helic 100.0 1.7E-36 5.9E-41 280.0 23.2 204 97-302 50-258 (262)
27 1t6n_A Probable ATP-dependent 100.0 3.3E-36 1.1E-40 270.5 23.3 201 99-305 14-219 (220)
28 2z0m_A 337AA long hypothetical 100.0 4.1E-35 1.4E-39 278.8 28.4 257 106-384 1-270 (337)
29 3dkp_A Probable ATP-dependent 100.0 2.6E-35 8.9E-40 269.0 19.6 208 95-307 21-241 (245)
30 3fho_A ATP-dependent RNA helic 100.0 2.9E-35 1E-39 296.5 18.1 275 98-384 118-411 (508)
31 2v1x_A ATP-dependent DNA helic 100.0 5.5E-34 1.9E-38 291.1 27.0 269 99-384 21-321 (591)
32 1oyw_A RECQ helicase, ATP-depe 100.0 3.7E-33 1.3E-37 281.8 23.4 262 100-384 3-290 (523)
33 2eyq_A TRCF, transcription-rep 100.0 6.3E-33 2.2E-37 301.8 23.0 312 45-384 518-868 (1151)
34 3oiy_A Reverse gyrase helicase 100.0 4.9E-33 1.7E-37 273.1 17.3 252 108-384 8-301 (414)
35 3l9o_A ATP-dependent RNA helic 100.0 7.1E-33 2.4E-37 299.9 20.2 189 100-306 163-353 (1108)
36 2zj8_A DNA helicase, putative 100.0 1.3E-32 4.4E-37 288.4 21.0 184 100-295 2-187 (720)
37 2va8_A SSO2462, SKI2-type heli 100.0 1.1E-31 3.8E-36 281.1 25.3 187 97-296 6-194 (715)
38 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-32 6.1E-37 286.5 17.5 269 100-384 2-326 (702)
39 2xgj_A ATP-dependent RNA helic 100.0 1.2E-29 4.3E-34 272.3 26.1 170 117-305 83-254 (1010)
40 4ddu_A Reverse gyrase; topoiso 100.0 3.5E-30 1.2E-34 278.8 19.8 251 109-384 66-358 (1104)
41 4a4z_A Antiviral helicase SKI2 100.0 9.8E-30 3.4E-34 273.0 22.8 157 117-290 36-192 (997)
42 2ykg_A Probable ATP-dependent 100.0 3.5E-30 1.2E-34 268.9 18.7 173 111-287 3-184 (696)
43 4a2p_A RIG-I, retinoic acid in 100.0 9.5E-30 3.2E-34 258.2 21.2 168 117-288 3-178 (556)
44 1gm5_A RECG; helicase, replica 100.0 1.4E-29 4.8E-34 264.5 19.8 253 108-384 356-643 (780)
45 3tbk_A RIG-I helicase domain; 100.0 1.4E-28 4.7E-33 249.3 22.9 164 121-288 4-176 (555)
46 4a2q_A RIG-I, retinoic acid in 100.0 1.4E-28 4.7E-33 260.4 21.8 168 116-287 243-418 (797)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-29 5.2E-34 273.6 12.3 247 110-384 46-323 (1054)
48 4f92_B U5 small nuclear ribonu 100.0 5.4E-28 1.9E-32 270.4 21.9 180 106-297 911-1103(1724)
49 1wp9_A ATP-dependent RNA helic 100.0 7.5E-27 2.6E-31 231.6 27.2 159 121-289 9-169 (494)
50 2oca_A DAR protein, ATP-depend 100.0 4.1E-28 1.4E-32 244.4 17.6 248 119-384 111-401 (510)
51 4gl2_A Interferon-induced heli 100.0 1.3E-28 4.6E-33 257.0 14.0 165 121-288 7-193 (699)
52 4a2w_A RIG-I, retinoic acid in 100.0 8E-28 2.7E-32 257.9 19.1 167 117-287 244-418 (936)
53 4f92_B U5 small nuclear ribonu 100.0 2.1E-27 7.1E-32 265.7 21.0 173 118-295 76-262 (1724)
54 1tf5_A Preprotein translocase 99.9 3.6E-26 1.2E-30 235.6 21.7 160 116-289 79-289 (844)
55 2fsf_A Preprotein translocase 99.9 3.9E-26 1.3E-30 234.8 15.5 145 117-275 71-240 (853)
56 1nkt_A Preprotein translocase 99.9 5.3E-25 1.8E-29 226.8 19.9 161 117-291 108-319 (922)
57 3b6e_A Interferon-induced heli 99.9 1.8E-25 6E-30 199.1 13.2 165 118-285 30-216 (216)
58 2fwr_A DNA repair protein RAD2 99.9 2.6E-24 8.7E-29 214.6 21.2 136 121-287 93-229 (472)
59 2whx_A Serine protease/ntpase/ 99.9 2.6E-27 9E-32 242.6 -3.4 254 100-384 150-405 (618)
60 2jlq_A Serine protease subunit 99.9 5.4E-26 1.8E-30 225.5 5.4 236 118-384 1-238 (451)
61 2xau_A PRE-mRNA-splicing facto 99.9 1.2E-23 4.3E-28 220.5 19.3 266 98-384 71-373 (773)
62 2wv9_A Flavivirin protease NS2 99.9 1.6E-27 5.6E-32 245.8 -11.3 242 113-384 202-460 (673)
63 3o8b_A HCV NS3 protease/helica 99.9 5.3E-25 1.8E-29 224.6 5.3 217 121-369 217-435 (666)
64 3llm_A ATP-dependent RNA helic 99.9 8.7E-24 3E-28 191.6 11.0 181 107-302 47-232 (235)
65 1yks_A Genome polyprotein [con 99.9 1.3E-25 4.5E-30 221.9 -2.3 214 132-384 4-227 (440)
66 2v6i_A RNA helicase; membrane, 99.9 5.1E-23 1.7E-27 202.9 15.5 220 135-384 1-221 (431)
67 3rc3_A ATP-dependent RNA helic 99.9 9.8E-24 3.3E-28 217.3 9.4 221 133-384 152-376 (677)
68 3h1t_A Type I site-specific re 99.9 7.5E-23 2.6E-27 209.6 15.0 166 121-299 178-354 (590)
69 1rif_A DAR protein, DNA helica 99.9 5.2E-23 1.8E-27 191.5 12.0 154 121-292 113-268 (282)
70 2z83_A Helicase/nucleoside tri 99.9 2.7E-23 9.2E-28 206.5 4.3 220 131-384 16-240 (459)
71 2fz4_A DNA repair protein RAD2 99.8 4.3E-20 1.5E-24 167.5 18.3 139 120-289 92-231 (237)
72 1z63_A Helicase of the SNF2/RA 99.8 1.1E-19 3.7E-24 182.3 19.8 149 121-288 37-189 (500)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 7.2E-20 2.4E-24 196.1 17.3 154 121-289 271-441 (1038)
74 3dmq_A RNA polymerase-associat 99.8 1E-19 3.5E-24 195.5 15.7 159 121-288 153-318 (968)
75 2ipc_A Preprotein translocase 99.8 4.6E-19 1.6E-23 182.4 12.6 128 117-258 76-215 (997)
76 3mwy_W Chromo domain-containin 99.7 9.2E-17 3.2E-21 169.8 20.5 155 121-287 236-406 (800)
77 1z3i_X Similar to RAD54-like; 99.7 5.3E-15 1.8E-19 152.7 25.5 160 121-288 55-232 (644)
78 3crv_A XPD/RAD3 related DNA he 99.7 8.2E-16 2.8E-20 156.0 15.0 129 118-259 1-187 (551)
79 2vl7_A XPD; helicase, unknown 99.6 2.5E-15 8.4E-20 152.0 10.0 127 117-258 4-188 (540)
80 3jux_A Protein translocase sub 99.5 1.1E-12 3.6E-17 133.2 20.6 130 117-258 72-258 (822)
81 1c4o_A DNA nucleotide excision 99.4 3.1E-12 1.1E-16 132.1 19.6 73 118-203 6-83 (664)
82 4a15_A XPD helicase, ATP-depen 99.3 4.3E-12 1.5E-16 130.0 10.6 69 121-197 3-75 (620)
83 2d7d_A Uvrabc system protein B 99.3 8.5E-11 2.9E-15 121.4 17.8 72 121-204 12-88 (661)
84 1w36_D RECD, exodeoxyribonucle 99.0 1.2E-09 4.1E-14 111.7 9.9 158 109-285 136-298 (608)
85 3upu_A ATP-dependent DNA helic 98.4 4.6E-06 1.6E-10 82.3 14.5 142 110-283 14-162 (459)
86 2gk6_A Regulator of nonsense t 98.3 9.3E-06 3.2E-10 83.2 16.4 71 119-197 178-248 (624)
87 3e1s_A Exodeoxyribonuclease V, 98.3 4.5E-06 1.6E-10 84.5 13.2 125 121-283 189-313 (574)
88 2xzl_A ATP-dependent helicase 98.3 1.4E-05 4.7E-10 84.0 16.3 71 119-197 358-428 (802)
89 4b3f_X DNA-binding protein smu 98.2 3.9E-06 1.3E-10 86.4 10.6 68 121-197 189-257 (646)
90 2wjy_A Regulator of nonsense t 98.2 1.8E-05 6.1E-10 83.1 15.6 71 119-197 354-424 (800)
91 2p6n_A ATP-dependent RNA helic 98.0 1.4E-05 4.8E-10 69.2 7.6 88 294-384 8-108 (191)
92 2rb4_A ATP-dependent RNA helic 97.8 5.6E-05 1.9E-09 64.2 7.9 71 314-384 4-88 (175)
93 3lfu_A DNA helicase II; SF1 he 97.7 0.00016 5.6E-09 74.1 10.8 71 120-197 8-78 (647)
94 1fuk_A Eukaryotic initiation f 97.6 0.00014 4.8E-09 61.0 8.0 69 316-384 2-84 (165)
95 2hjv_A ATP-dependent RNA helic 97.5 0.00025 8.4E-09 59.4 8.4 71 313-384 5-89 (163)
96 1t5i_A C_terminal domain of A 97.5 0.00022 7.5E-09 60.4 7.9 69 315-384 3-85 (172)
97 3ec2_A DNA replication protein 97.4 0.0012 4E-08 56.0 11.4 31 123-153 16-55 (180)
98 2jgn_A DBX, DDX3, ATP-dependen 97.4 0.00036 1.2E-08 59.8 7.1 71 313-384 15-100 (185)
99 2o0j_A Terminase, DNA packagin 97.3 0.00022 7.4E-09 68.4 5.6 69 121-196 163-231 (385)
100 3cpe_A Terminase, DNA packagin 97.3 0.00057 1.9E-08 69.5 8.9 144 121-288 163-315 (592)
101 3vkw_A Replicase large subunit 97.0 0.0033 1.1E-07 61.0 10.6 86 138-260 163-248 (446)
102 2orw_A Thymidine kinase; TMTK, 97.0 0.00056 1.9E-08 58.6 4.7 40 135-183 2-41 (184)
103 2chg_A Replication factor C sm 96.9 0.017 5.7E-07 49.6 13.1 40 244-284 101-140 (226)
104 2yjt_D ATP-dependent RNA helic 95.9 0.00016 5.6E-09 60.9 0.0 53 332-384 32-84 (170)
105 3i32_A Heat resistant RNA depe 96.8 0.0022 7.7E-08 59.2 7.0 66 318-384 3-82 (300)
106 2b8t_A Thymidine kinase; deoxy 96.8 0.0027 9.1E-08 56.1 7.1 113 135-283 11-123 (223)
107 2z4s_A Chromosomal replication 96.7 0.0074 2.5E-07 58.9 10.8 41 245-285 194-236 (440)
108 3eaq_A Heat resistant RNA depe 96.7 0.0029 1E-07 55.2 7.0 44 341-384 42-85 (212)
109 2kjq_A DNAA-related protein; s 96.7 0.0012 4.2E-08 54.4 4.0 18 135-152 35-52 (149)
110 3bos_A Putative DNA replicatio 96.7 0.0029 9.8E-08 55.6 6.7 19 135-153 51-69 (242)
111 1l8q_A Chromosomal replication 96.6 0.011 3.9E-07 54.8 10.8 18 136-153 37-54 (324)
112 3kl4_A SRP54, signal recogniti 96.6 0.022 7.6E-07 55.2 12.7 132 137-298 98-235 (433)
113 2j9r_A Thymidine kinase; TK1, 96.5 0.0059 2E-07 53.3 7.1 40 136-184 28-67 (214)
114 1xx6_A Thymidine kinase; NESG, 96.4 0.0089 3E-07 51.3 8.1 40 135-183 7-46 (191)
115 2orv_A Thymidine kinase; TP4A 96.4 0.013 4.6E-07 51.6 9.2 41 135-184 18-58 (234)
116 3te6_A Regulatory protein SIR3 96.4 0.018 6.2E-07 53.5 10.4 26 136-162 45-70 (318)
117 2v1u_A Cell division control p 96.3 0.022 7.5E-07 53.7 10.9 19 135-153 43-61 (387)
118 3h4m_A Proteasome-activating n 96.2 0.021 7.2E-07 51.7 9.8 54 97-153 12-68 (285)
119 1d2n_A N-ethylmaleimide-sensit 96.2 0.059 2E-06 48.5 12.5 17 137-153 65-81 (272)
120 1uaa_A REP helicase, protein ( 96.2 0.0094 3.2E-07 61.4 7.9 70 121-197 2-71 (673)
121 3e2i_A Thymidine kinase; Zn-bi 96.1 0.01 3.5E-07 51.7 6.7 41 135-184 27-67 (219)
122 1pjr_A PCRA; DNA repair, DNA r 96.1 0.015 5.3E-07 60.3 8.9 70 120-196 10-79 (724)
123 3syl_A Protein CBBX; photosynt 96.0 0.044 1.5E-06 50.2 10.8 17 137-153 68-84 (309)
124 1w4r_A Thymidine kinase; type 95.9 0.024 8.4E-07 48.6 8.2 38 136-182 20-57 (195)
125 1a5t_A Delta prime, HOLB; zinc 95.9 0.019 6.6E-07 53.6 8.2 39 122-161 3-48 (334)
126 3n70_A Transport activator; si 95.8 0.052 1.8E-06 43.9 9.4 20 134-153 22-41 (145)
127 3u4q_A ATP-dependent helicase/ 95.8 0.017 5.9E-07 63.6 8.2 107 121-237 10-117 (1232)
128 2zpa_A Uncharacterized protein 95.7 0.02 6.7E-07 58.4 7.6 114 121-288 175-290 (671)
129 2w58_A DNAI, primosome compone 95.6 0.051 1.7E-06 46.4 9.2 17 137-153 55-71 (202)
130 2qby_A CDC6 homolog 1, cell di 95.6 0.078 2.7E-06 49.7 11.0 18 136-153 45-62 (386)
131 3dm5_A SRP54, signal recogniti 95.6 0.086 3E-06 51.1 11.3 132 137-298 101-236 (443)
132 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.14 4.9E-06 45.3 12.1 52 99-153 3-56 (262)
133 2qby_B CDC6 homolog 3, cell di 95.5 0.027 9.4E-07 53.2 7.5 17 137-153 46-62 (384)
134 2p65_A Hypothetical protein PF 95.5 0.053 1.8E-06 45.1 8.5 18 136-153 43-60 (187)
135 3u61_B DNA polymerase accessor 95.5 0.018 6.2E-07 53.3 6.0 41 244-284 104-144 (324)
136 1iqp_A RFCS; clamp loader, ext 95.4 0.05 1.7E-06 50.0 9.0 40 244-284 109-148 (327)
137 4b4t_J 26S protease regulatory 95.4 0.18 6.1E-06 48.3 12.5 55 96-153 142-199 (405)
138 2qgz_A Helicase loader, putati 95.3 0.048 1.6E-06 50.4 8.4 18 136-153 152-169 (308)
139 1jbk_A CLPB protein; beta barr 95.3 0.38 1.3E-05 39.7 13.6 18 136-153 43-60 (195)
140 1fnn_A CDC6P, cell division co 95.3 0.032 1.1E-06 52.7 7.4 16 138-153 46-61 (389)
141 1njg_A DNA polymerase III subu 95.3 0.14 4.8E-06 44.2 11.0 16 138-153 47-62 (250)
142 1g5t_A COB(I)alamin adenosyltr 95.2 0.045 1.5E-06 47.0 7.2 139 137-295 29-172 (196)
143 2q6t_A DNAB replication FORK h 95.1 0.047 1.6E-06 53.2 7.9 139 136-285 200-362 (444)
144 3eie_A Vacuolar protein sortin 94.9 0.19 6.6E-06 46.4 11.4 51 97-153 13-68 (322)
145 1sxj_D Activator 1 41 kDa subu 94.9 0.19 6.4E-06 46.7 11.3 40 244-284 132-171 (353)
146 2r6a_A DNAB helicase, replicat 94.8 0.069 2.4E-06 52.1 8.3 139 135-284 202-362 (454)
147 1sxj_C Activator 1 40 kDa subu 94.8 0.19 6.5E-06 46.8 10.9 39 244-283 109-147 (340)
148 4b4t_H 26S protease regulatory 94.7 0.3 1E-05 47.5 12.1 56 95-153 202-260 (467)
149 4a1f_A DNAB helicase, replicat 94.7 0.013 4.4E-07 55.0 2.5 140 135-285 45-205 (338)
150 2dr3_A UPF0273 protein PH0284; 94.6 0.34 1.2E-05 42.3 11.7 53 135-197 22-74 (247)
151 1sxj_B Activator 1 37 kDa subu 94.5 0.16 5.5E-06 46.4 9.6 38 245-283 107-144 (323)
152 4b4t_I 26S protease regulatory 94.3 0.58 2E-05 45.0 13.0 56 95-153 175-233 (437)
153 3bh0_A DNAB-like replicative h 94.2 0.2 6.8E-06 46.3 9.5 138 135-284 67-229 (315)
154 3vfd_A Spastin; ATPase, microt 94.1 0.3 1E-05 46.4 10.9 18 136-153 148-165 (389)
155 4b4t_K 26S protease regulatory 94.0 0.36 1.2E-05 46.6 11.2 56 95-153 165-223 (428)
156 2bjv_A PSP operon transcriptio 94.0 0.52 1.8E-05 41.9 11.7 19 135-153 28-46 (265)
157 1sxj_A Activator 1 95 kDa subu 94.0 0.17 5.8E-06 50.2 9.1 42 244-287 147-190 (516)
158 3pfi_A Holliday junction ATP-d 93.9 0.2 6.7E-06 46.5 8.9 17 137-153 56-72 (338)
159 3pvs_A Replication-associated 93.8 0.12 4E-06 50.4 7.4 17 137-153 51-67 (447)
160 1sxj_E Activator 1 40 kDa subu 93.8 0.23 7.9E-06 46.2 9.3 43 244-287 133-175 (354)
161 1hqc_A RUVB; extended AAA-ATPa 93.7 0.29 1E-05 44.8 9.7 18 136-153 38-55 (324)
162 3uk6_A RUVB-like 2; hexameric 93.7 0.4 1.4E-05 44.8 10.7 17 137-153 71-87 (368)
163 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.43 1.5E-05 41.1 10.2 19 135-153 22-40 (235)
164 2p6n_A ATP-dependent RNA helic 93.6 0.76 2.6E-05 38.9 11.5 73 173-253 54-130 (191)
165 2chq_A Replication factor C sm 93.6 0.094 3.2E-06 47.9 6.1 42 99-153 14-55 (319)
166 4b4t_L 26S protease subunit RP 93.6 0.4 1.4E-05 46.4 10.7 55 96-153 175-232 (437)
167 1cr0_A DNA primase/helicase; R 93.6 0.11 3.7E-06 47.4 6.3 20 134-153 33-52 (296)
168 2qp9_X Vacuolar protein sortin 93.6 0.83 2.8E-05 42.8 12.7 51 97-153 46-101 (355)
169 1w5s_A Origin recognition comp 93.4 0.14 4.8E-06 48.6 7.2 17 137-153 51-69 (412)
170 1n0w_A DNA repair protein RAD5 93.3 0.56 1.9E-05 40.8 10.4 21 135-155 23-43 (243)
171 2gno_A DNA polymerase III, gam 93.1 0.58 2E-05 43.0 10.5 40 243-283 80-119 (305)
172 2hjv_A ATP-dependent RNA helic 93.1 0.48 1.6E-05 38.8 9.0 74 173-254 35-112 (163)
173 3hjh_A Transcription-repair-co 93.0 0.42 1.4E-05 46.9 9.9 53 135-199 13-65 (483)
174 1xp8_A RECA protein, recombina 92.7 0.59 2E-05 44.1 10.2 39 136-183 74-112 (366)
175 1jr3_A DNA polymerase III subu 92.7 0.54 1.9E-05 43.8 10.0 40 243-283 117-156 (373)
176 2rb4_A ATP-dependent RNA helic 92.6 0.72 2.5E-05 38.2 9.7 75 172-254 33-111 (175)
177 1fuk_A Eukaryotic initiation f 92.5 0.62 2.1E-05 38.2 9.0 74 173-254 30-107 (165)
178 3bgw_A DNAB-like replicative h 92.5 0.14 4.6E-06 49.9 5.5 138 136-285 197-359 (444)
179 3hu3_A Transitional endoplasmi 92.3 0.26 9E-06 48.5 7.3 42 247-288 299-350 (489)
180 3eaq_A Heat resistant RNA depe 91.9 0.64 2.2E-05 40.1 8.7 71 173-251 31-105 (212)
181 3io5_A Recombination and repai 91.9 0.57 2E-05 43.3 8.5 90 138-258 30-124 (333)
182 3i5x_A ATP-dependent RNA helic 91.8 1.4 4.7E-05 43.8 12.1 78 172-255 338-420 (563)
183 3cmu_A Protein RECA, recombina 91.6 0.45 1.5E-05 54.3 9.0 47 130-185 1415-1467(2050)
184 1t5i_A C_terminal domain of A 91.4 2.1 7.1E-05 35.3 11.0 76 172-255 30-109 (172)
185 1nlf_A Regulatory protein REPA 91.3 1.7 6E-05 38.8 11.3 23 133-155 27-49 (279)
186 2px0_A Flagellar biosynthesis 90.8 3.1 0.00011 37.8 12.5 19 135-153 104-122 (296)
187 2z43_A DNA repair and recombin 90.6 1.1 3.8E-05 41.3 9.5 65 129-196 95-165 (324)
188 2fna_A Conserved hypothetical 90.6 9.7 0.00033 34.6 16.9 36 247-283 139-177 (357)
189 2eyq_A TRCF, transcription-rep 90.5 0.48 1.7E-05 51.7 7.8 79 172-256 811-893 (1151)
190 3sqw_A ATP-dependent RNA helic 90.3 2.3 7.8E-05 42.5 12.2 78 172-255 287-369 (579)
191 2ehv_A Hypothetical protein PH 90.3 0.27 9.4E-06 43.0 4.8 45 244-288 134-183 (251)
192 3co5_A Putative two-component 90.3 0.25 8.5E-06 39.7 4.1 21 133-153 24-44 (143)
193 2zr9_A Protein RECA, recombina 90.0 0.82 2.8E-05 42.8 8.0 39 135-182 60-98 (349)
194 2jgn_A DBX, DDX3, ATP-dependen 89.9 0.69 2.4E-05 38.9 6.8 73 172-252 45-121 (185)
195 3m6a_A ATP-dependent protease 89.9 0.6 2.1E-05 46.5 7.4 19 135-153 107-125 (543)
196 2l8b_A Protein TRAI, DNA helic 89.7 0.65 2.2E-05 39.2 6.2 121 122-285 35-158 (189)
197 2i4i_A ATP-dependent RNA helic 89.6 1.9 6.4E-05 40.7 10.4 72 172-251 275-350 (417)
198 3hr8_A Protein RECA; alpha and 89.3 0.52 1.8E-05 44.3 6.0 41 136-185 61-101 (356)
199 1z5z_A Helicase of the SNF2/RA 89.2 0.24 8.3E-06 44.7 3.5 40 344-383 126-167 (271)
200 3e70_C DPA, signal recognition 89.1 3.9 0.00013 37.8 11.8 54 245-298 211-265 (328)
201 3pxi_A Negative regulator of g 89.0 2.7 9.2E-05 43.6 11.8 16 138-153 523-538 (758)
202 1qvr_A CLPB protein; coiled co 88.8 0.82 2.8E-05 48.2 7.8 17 137-153 192-208 (854)
203 1ls1_A Signal recognition part 88.6 3.1 0.00011 37.8 10.7 54 244-297 179-233 (295)
204 1u94_A RECA protein, recombina 88.5 1.4 4.6E-05 41.4 8.3 39 135-182 62-100 (356)
205 1vma_A Cell division protein F 88.3 6.5 0.00022 35.9 12.6 18 136-153 104-121 (306)
206 3i32_A Heat resistant RNA depe 88.1 1.5 5E-05 40.1 8.1 73 173-253 28-104 (300)
207 4a74_A DNA repair and recombin 87.9 3.2 0.00011 35.4 9.9 19 135-153 24-42 (231)
208 4b4t_M 26S protease regulatory 87.8 0.23 7.8E-06 48.1 2.5 56 95-153 174-232 (434)
209 3fht_A ATP-dependent RNA helic 87.4 2.1 7.1E-05 40.2 9.1 74 173-254 266-343 (412)
210 3pey_A ATP-dependent RNA helic 87.3 10 0.00035 34.9 13.8 77 172-256 242-322 (395)
211 2ffh_A Protein (FFH); SRP54, s 87.1 8 0.00027 37.1 12.9 18 136-153 98-115 (425)
212 1e9r_A Conjugal transfer prote 87.0 0.8 2.7E-05 44.1 5.9 26 136-162 53-78 (437)
213 3lda_A DNA repair protein RAD5 86.8 4.6 0.00016 38.5 11.0 43 137-182 179-221 (400)
214 3hws_A ATP-dependent CLP prote 86.6 1 3.5E-05 42.1 6.3 19 135-153 50-68 (363)
215 2d7d_A Uvrabc system protein B 86.5 27 0.00093 35.4 17.3 78 172-257 444-525 (661)
216 2i1q_A DNA repair and recombin 86.5 2.1 7.2E-05 39.2 8.2 62 136-197 98-167 (322)
217 3cmu_A Protein RECA, recombina 86.5 1.2 4.2E-05 50.9 7.7 54 135-200 1080-1133(2050)
218 1q57_A DNA primase/helicase; d 86.4 1 3.5E-05 44.3 6.5 50 135-193 241-290 (503)
219 2v3c_C SRP54, signal recogniti 85.5 2.1 7.2E-05 41.3 8.0 18 137-154 100-117 (432)
220 1r6b_X CLPA protein; AAA+, N-t 85.3 3 0.0001 43.1 9.6 18 136-153 207-224 (758)
221 1v5w_A DMC1, meiotic recombina 85.2 3.5 0.00012 38.2 9.2 64 130-196 111-180 (343)
222 1xti_A Probable ATP-dependent 85.1 2.7 9.3E-05 39.1 8.5 76 172-255 249-328 (391)
223 1hv8_A Putative ATP-dependent 85.1 2.6 8.8E-05 38.7 8.2 75 172-254 237-315 (367)
224 1oyw_A RECQ helicase, ATP-depe 84.9 4.5 0.00015 39.9 10.3 74 172-253 235-312 (523)
225 2v1x_A ATP-dependent DNA helic 84.9 2.7 9.2E-05 42.3 8.7 74 172-253 266-343 (591)
226 3cf2_A TER ATPase, transitiona 84.8 5.8 0.0002 41.3 11.3 17 137-153 239-255 (806)
227 3u4q_B ATP-dependent helicase/ 84.6 2.7 9.3E-05 45.9 9.3 88 139-255 4-91 (1166)
228 2j0s_A ATP-dependent RNA helic 84.5 4 0.00014 38.3 9.4 73 173-253 276-352 (410)
229 2oca_A DAR protein, ATP-depend 84.1 9.4 0.00032 37.1 12.2 77 173-256 347-427 (510)
230 1s2m_A Putative ATP-dependent 83.9 3.9 0.00013 38.2 9.0 74 172-253 257-334 (400)
231 2yhs_A FTSY, cell division pro 83.7 7.1 0.00024 38.2 10.8 15 138-152 295-309 (503)
232 1p9r_A General secretion pathw 83.7 1.8 6.2E-05 41.5 6.6 28 125-152 154-183 (418)
233 2oap_1 GSPE-2, type II secreti 83.7 1.3 4.6E-05 43.7 5.7 40 111-152 236-276 (511)
234 2j37_W Signal recognition part 83.4 10 0.00034 37.3 11.9 35 138-181 103-137 (504)
235 3cf0_A Transitional endoplasmi 83.4 0.32 1.1E-05 44.4 1.1 54 97-153 10-66 (301)
236 1yks_A Genome polyprotein [con 83.2 1.9 6.6E-05 41.5 6.6 68 173-250 177-245 (440)
237 3nbx_X ATPase RAVA; AAA+ ATPas 83.0 1.3 4.4E-05 43.7 5.3 43 110-153 16-58 (500)
238 2db3_A ATP-dependent RNA helic 83.0 4.5 0.00015 38.7 9.1 70 175-252 302-375 (434)
239 3b85_A Phosphate starvation-in 82.9 1.5 5E-05 37.8 5.0 31 122-152 8-38 (208)
240 1c4o_A DNA nucleotide excision 82.5 8.6 0.00029 39.2 11.4 77 173-257 439-519 (664)
241 2zts_A Putative uncharacterize 82.3 1.5 5.2E-05 38.0 5.1 53 136-197 30-82 (251)
242 1ofh_A ATP-dependent HSL prote 82.1 2.4 8.1E-05 38.2 6.4 18 136-153 50-67 (310)
243 1wp9_A ATP-dependent RNA helic 81.6 8.1 0.00028 36.6 10.4 76 172-255 360-447 (494)
244 4ag6_A VIRB4 ATPase, type IV s 81.4 1.6 5.3E-05 41.4 5.1 42 245-286 262-307 (392)
245 2r44_A Uncharacterized protein 81.1 1.5 5.1E-05 40.3 4.7 24 130-153 40-63 (331)
246 1u0j_A DNA replication protein 81.0 3.4 0.00012 37.0 6.9 42 109-153 74-121 (267)
247 1pzn_A RAD51, DNA repair and r 80.8 9.4 0.00032 35.4 10.2 18 137-154 132-149 (349)
248 3vaa_A Shikimate kinase, SK; s 80.5 0.81 2.8E-05 38.8 2.5 20 134-153 23-42 (199)
249 1kgd_A CASK, peripheral plasma 80.3 0.8 2.7E-05 38.2 2.3 19 135-153 4-22 (180)
250 2gza_A Type IV secretion syste 80.2 0.94 3.2E-05 42.6 3.1 21 132-152 171-191 (361)
251 1um8_A ATP-dependent CLP prote 80.2 3 0.0001 39.0 6.6 18 136-153 72-89 (376)
252 1lvg_A Guanylate kinase, GMP k 80.1 0.84 2.9E-05 38.8 2.5 19 135-153 3-21 (198)
253 3cmw_A Protein RECA, recombina 79.6 2.9 0.0001 47.2 7.1 89 137-259 1432-1523(1706)
254 2qor_A Guanylate kinase; phosp 79.0 0.87 3E-05 38.7 2.2 21 133-153 9-29 (204)
255 1j8m_F SRP54, signal recogniti 78.9 13 0.00046 33.5 10.4 18 136-153 98-115 (297)
256 2x8a_A Nuclear valosin-contain 78.5 0.38 1.3E-05 43.4 -0.3 54 97-153 5-61 (274)
257 4f4c_A Multidrug resistance pr 78.2 0.98 3.3E-05 50.1 2.8 39 244-282 1234-1272(1321)
258 2eyu_A Twitching motility prot 78.1 0.83 2.9E-05 40.9 1.9 20 133-152 22-41 (261)
259 1qhx_A CPT, protein (chloramph 77.8 1.1 3.6E-05 37.0 2.3 18 136-153 3-20 (178)
260 2yjt_D ATP-dependent RNA helic 79.3 0.45 1.5E-05 39.3 0.0 73 173-253 30-106 (170)
261 2j41_A Guanylate kinase; GMP, 77.6 1.1 3.6E-05 37.9 2.3 21 133-153 3-23 (207)
262 1tue_A Replication protein E1; 77.5 3.3 0.00011 35.6 5.4 51 108-161 28-82 (212)
263 3tr0_A Guanylate kinase, GMP k 77.2 1.1 3.8E-05 37.8 2.3 19 134-152 5-23 (205)
264 3trf_A Shikimate kinase, SK; a 77.2 1.1 3.9E-05 37.0 2.4 18 136-153 5-22 (185)
265 1ixz_A ATP-dependent metallopr 77.1 0.75 2.6E-05 40.5 1.3 54 97-153 11-66 (254)
266 3jvv_A Twitching mobility prot 77.0 2.3 7.8E-05 39.9 4.6 19 134-152 121-139 (356)
267 3iij_A Coilin-interacting nucl 76.9 0.84 2.9E-05 37.8 1.5 20 134-153 9-28 (180)
268 2wv9_A Flavivirin protease NS2 76.7 4.4 0.00015 41.4 7.0 68 173-250 410-478 (673)
269 1kag_A SKI, shikimate kinase I 76.7 1.4 4.7E-05 36.0 2.7 18 136-153 4-21 (173)
270 2xxa_A Signal recognition part 76.6 15 0.0005 35.3 10.3 18 137-154 101-118 (433)
271 1zp6_A Hypothetical protein AT 76.6 0.83 2.8E-05 38.1 1.3 20 133-152 6-25 (191)
272 3b9p_A CG5977-PA, isoform A; A 76.5 1.1 3.9E-05 40.3 2.3 54 97-153 16-71 (297)
273 3tau_A Guanylate kinase, GMP k 76.5 1.3 4.3E-05 37.9 2.5 19 135-153 7-25 (208)
274 4akg_A Glutathione S-transfera 76.5 2.5 8.7E-05 49.9 5.6 48 106-154 890-941 (2695)
275 2pt7_A CAG-ALFA; ATPase, prote 76.4 1.2 4.1E-05 41.3 2.5 20 133-152 168-187 (330)
276 3lw7_A Adenylate kinase relate 76.3 1.2 4E-05 36.2 2.2 16 138-153 3-18 (179)
277 3a8t_A Adenylate isopentenyltr 76.2 1.3 4.6E-05 41.1 2.7 18 136-153 40-57 (339)
278 1ojl_A Transcriptional regulat 75.6 2 6.8E-05 39.2 3.7 19 135-153 24-42 (304)
279 1kht_A Adenylate kinase; phosp 75.5 1.3 4.6E-05 36.6 2.4 19 135-153 2-20 (192)
280 2va8_A SSO2462, SKI2-type heli 75.2 10 0.00034 38.8 9.4 74 172-251 251-362 (715)
281 2qmh_A HPR kinase/phosphorylas 75.0 1.6 5.4E-05 37.5 2.7 18 136-153 34-51 (205)
282 1y63_A LMAJ004144AAA protein; 75.0 1.5 5E-05 36.6 2.5 19 135-153 9-27 (184)
283 3foz_A TRNA delta(2)-isopenten 74.9 1.4 4.7E-05 40.6 2.4 16 138-153 12-27 (316)
284 2z0m_A 337AA long hypothetical 74.8 7.4 0.00025 35.1 7.5 71 172-254 219-293 (337)
285 3cm0_A Adenylate kinase; ATP-b 74.8 1 3.6E-05 37.3 1.5 19 135-153 3-21 (186)
286 1lv7_A FTSH; alpha/beta domain 74.6 1.3 4.6E-05 38.9 2.2 53 98-153 8-62 (257)
287 2ze6_A Isopentenyl transferase 74.5 1.3 4.6E-05 39.1 2.2 16 138-153 3-18 (253)
288 2cvh_A DNA repair and recombin 74.4 3.3 0.00011 35.1 4.7 20 135-154 19-38 (220)
289 1z6g_A Guanylate kinase; struc 74.4 1.7 5.7E-05 37.5 2.7 20 133-152 20-39 (218)
290 3exa_A TRNA delta(2)-isopenten 74.4 1.3 4.5E-05 40.7 2.2 17 137-153 4-20 (322)
291 2v6i_A RNA helicase; membrane, 74.2 4.7 0.00016 38.6 6.2 67 173-249 171-238 (431)
292 1s96_A Guanylate kinase, GMP k 73.6 1.6 5.6E-05 37.7 2.5 21 132-152 12-32 (219)
293 2jlq_A Serine protease subunit 73.6 6.3 0.00021 38.0 6.9 68 173-250 188-256 (451)
294 1xwi_A SKD1 protein; VPS4B, AA 73.1 1.6 5.3E-05 40.3 2.3 51 97-153 7-62 (322)
295 3ney_A 55 kDa erythrocyte memb 72.8 1.7 5.9E-05 37.1 2.4 19 135-153 18-36 (197)
296 3o8b_A HCV NS3 protease/helica 72.6 5.7 0.00019 40.4 6.5 67 172-250 395-461 (666)
297 3nwn_A Kinesin-like protein KI 72.6 2.7 9.4E-05 39.4 3.9 25 129-153 96-122 (359)
298 1rj9_A FTSY, signal recognitio 72.5 4.2 0.00014 37.1 5.1 17 136-152 102-118 (304)
299 1ly1_A Polynucleotide kinase; 72.5 1.7 5.7E-05 35.6 2.2 16 138-153 4-19 (181)
300 1iy2_A ATP-dependent metallopr 72.4 1.1 3.9E-05 40.1 1.2 54 97-153 35-90 (278)
301 1ex7_A Guanylate kinase; subst 72.4 1.7 5.8E-05 36.7 2.2 16 137-152 2-17 (186)
302 3vkg_A Dynein heavy chain, cyt 71.9 4.6 0.00016 48.4 6.2 48 106-154 873-924 (3245)
303 1znw_A Guanylate kinase, GMP k 71.8 1.9 6.6E-05 36.6 2.5 21 132-152 16-36 (207)
304 3t15_A Ribulose bisphosphate c 71.8 1.6 5.6E-05 39.5 2.1 17 137-153 37-53 (293)
305 1bg2_A Kinesin; motor protein, 71.5 3.2 0.00011 38.4 4.0 25 129-153 69-95 (325)
306 4gp7_A Metallophosphoesterase; 71.5 1.7 5.7E-05 35.9 2.0 19 135-153 8-26 (171)
307 3kb2_A SPBC2 prophage-derived 71.4 1.8 6.3E-05 35.0 2.2 16 138-153 3-18 (173)
308 4f4c_A Multidrug resistance pr 71.4 11 0.00036 41.8 8.8 40 243-282 570-609 (1321)
309 3a00_A Guanylate kinase, GMP k 71.3 2.1 7.3E-05 35.6 2.6 16 137-152 2-17 (186)
310 4eun_A Thermoresistant glucoki 71.3 2 6.9E-05 36.2 2.5 19 135-153 28-46 (200)
311 1knq_A Gluconate kinase; ALFA/ 71.2 1.7 5.8E-05 35.6 1.9 19 135-153 7-25 (175)
312 4fcw_A Chaperone protein CLPB; 71.0 2.1 7.1E-05 38.7 2.7 17 137-153 48-64 (311)
313 2r8r_A Sensor protein; KDPD, P 70.9 4.8 0.00017 35.1 4.8 22 138-159 8-29 (228)
314 2c95_A Adenylate kinase 1; tra 70.5 2.2 7.5E-05 35.5 2.5 21 133-153 6-26 (196)
315 2c9o_A RUVB-like 1; hexameric 70.3 1.9 6.6E-05 41.8 2.4 18 136-153 63-80 (456)
316 2ewv_A Twitching motility prot 70.0 2 6.9E-05 40.5 2.4 20 133-152 133-152 (372)
317 1z6t_A APAF-1, apoptotic prote 69.9 16 0.00056 36.1 9.2 17 137-153 148-164 (591)
318 1v8k_A Kinesin-like protein KI 69.7 3.4 0.00012 39.4 3.9 25 129-153 146-172 (410)
319 2v54_A DTMP kinase, thymidylat 69.6 1.9 6.6E-05 36.2 2.0 19 135-153 3-21 (204)
320 2h58_A Kinesin-like protein KI 69.6 3.7 0.00013 38.0 4.0 26 128-153 71-98 (330)
321 3crm_A TRNA delta(2)-isopenten 69.6 2.5 8.7E-05 39.0 2.9 16 138-153 7-22 (323)
322 3dc4_A Kinesin-like protein NO 69.5 3 0.0001 38.8 3.4 24 130-153 87-112 (344)
323 2vvg_A Kinesin-2; motor protei 69.5 3.7 0.00013 38.3 4.0 25 129-153 81-107 (350)
324 4etp_A Kinesin-like protein KA 69.4 3.4 0.00012 39.4 3.8 25 129-153 132-158 (403)
325 2zfi_A Kinesin-like protein KI 69.3 3.7 0.00013 38.6 4.0 25 129-153 81-107 (366)
326 3b6u_A Kinesin-like protein KI 69.3 3.6 0.00012 38.7 3.9 25 129-153 93-119 (372)
327 2y65_A Kinesin, kinesin heavy 69.2 3.7 0.00013 38.5 4.0 25 129-153 76-102 (365)
328 4a14_A Kinesin, kinesin-like p 69.1 3.8 0.00013 38.2 4.0 25 129-153 75-101 (344)
329 1t5c_A CENP-E protein, centrom 69.1 3.7 0.00013 38.3 3.9 25 129-153 69-95 (349)
330 3gbj_A KIF13B protein; kinesin 69.1 3.7 0.00013 38.4 3.9 25 129-153 84-110 (354)
331 1goj_A Kinesin, kinesin heavy 68.9 3.7 0.00013 38.4 3.9 24 130-153 73-98 (355)
332 2nr8_A Kinesin-like protein KI 68.8 3.8 0.00013 38.4 3.9 25 129-153 95-121 (358)
333 3d8b_A Fidgetin-like protein 1 68.6 2.2 7.6E-05 39.8 2.3 18 136-153 117-134 (357)
334 2r62_A Cell division protease 68.6 1.2 4.2E-05 39.4 0.5 18 136-153 44-61 (268)
335 3fb4_A Adenylate kinase; psych 68.4 2.3 7.9E-05 36.2 2.2 16 138-153 2-17 (216)
336 3lre_A Kinesin-like protein KI 68.3 3.8 0.00013 38.3 3.9 25 129-153 97-123 (355)
337 2xau_A PRE-mRNA-splicing facto 68.2 24 0.00081 36.6 10.2 74 172-251 302-393 (773)
338 3d3q_A TRNA delta(2)-isopenten 68.2 2.4 8.1E-05 39.5 2.4 16 138-153 9-24 (340)
339 1tev_A UMP-CMP kinase; ploop, 68.0 2.1 7.2E-05 35.5 1.9 18 136-153 3-20 (196)
340 1x88_A Kinesin-like protein KI 67.9 3.7 0.00013 38.5 3.7 25 129-153 80-106 (359)
341 3nwj_A ATSK2; P loop, shikimat 67.9 3.1 0.0001 36.9 3.0 20 134-153 46-65 (250)
342 2r2a_A Uncharacterized protein 67.8 3.5 0.00012 35.1 3.3 17 137-153 6-22 (199)
343 3eiq_A Eukaryotic initiation f 67.7 4 0.00014 38.2 4.0 74 172-253 279-356 (414)
344 3dl0_A Adenylate kinase; phosp 67.7 2.4 8.3E-05 36.1 2.2 16 138-153 2-17 (216)
345 3t0q_A AGR253WP; kinesin, alph 67.6 3.4 0.00012 38.5 3.4 25 129-153 77-103 (349)
346 2rhm_A Putative kinase; P-loop 67.6 1.8 6.3E-05 35.9 1.4 18 136-153 5-22 (193)
347 1g8p_A Magnesium-chelatase 38 67.6 1.7 5.7E-05 40.0 1.2 18 136-153 45-62 (350)
348 2plr_A DTMP kinase, probable t 66.8 2.2 7.7E-05 35.9 1.8 19 135-153 3-21 (213)
349 3u06_A Protein claret segregat 66.8 3.9 0.00013 39.1 3.7 26 128-153 129-156 (412)
350 3uie_A Adenylyl-sulfate kinase 66.8 2.4 8.2E-05 35.7 2.0 31 122-153 12-42 (200)
351 3cob_A Kinesin heavy chain-lik 66.8 3.6 0.00012 38.7 3.3 25 129-153 71-97 (369)
352 1m7g_A Adenylylsulfate kinase; 66.7 3.1 0.00011 35.3 2.8 31 122-153 12-42 (211)
353 2heh_A KIF2C protein; kinesin, 66.7 4.2 0.00014 38.5 3.8 25 129-153 126-152 (387)
354 1via_A Shikimate kinase; struc 66.7 2.9 9.9E-05 34.2 2.5 16 138-153 6-21 (175)
355 3b9q_A Chloroplast SRP recepto 66.6 4.6 0.00016 36.8 4.0 18 135-152 99-116 (302)
356 3t61_A Gluconokinase; PSI-biol 66.6 2.6 9E-05 35.4 2.2 17 137-153 19-35 (202)
357 1aky_A Adenylate kinase; ATP:A 66.4 2.9 0.0001 35.7 2.5 19 135-153 3-21 (220)
358 1ye8_A Protein THEP1, hypothet 66.3 2.8 9.4E-05 35.0 2.2 15 138-152 2-16 (178)
359 1gvn_B Zeta; postsegregational 65.9 2.6 9E-05 38.1 2.2 17 137-153 34-50 (287)
360 2bdt_A BH3686; alpha-beta prot 65.9 2.8 9.6E-05 34.8 2.2 16 138-153 4-19 (189)
361 2owm_A Nckin3-434, related to 65.8 4.7 0.00016 38.9 4.0 24 130-153 129-154 (443)
362 2bwj_A Adenylate kinase 5; pho 65.8 2.7 9.2E-05 35.0 2.1 20 134-153 10-29 (199)
363 2wbe_C Bipolar kinesin KRP-130 65.8 3.9 0.00013 38.5 3.4 24 130-153 93-118 (373)
364 1zd8_A GTP:AMP phosphotransfer 65.8 2.8 9.7E-05 36.1 2.3 19 135-153 6-24 (227)
365 3eph_A TRNA isopentenyltransfe 65.7 2.7 9.3E-05 40.0 2.3 16 138-153 4-19 (409)
366 2iyv_A Shikimate kinase, SK; t 65.7 3.3 0.00011 34.1 2.6 17 137-153 3-19 (184)
367 1f9v_A Kinesin-like protein KA 65.4 3.6 0.00012 38.4 3.0 25 129-153 76-102 (347)
368 2cdn_A Adenylate kinase; phosp 64.8 3.3 0.00011 34.7 2.5 18 136-153 20-37 (201)
369 2pt5_A Shikimate kinase, SK; a 64.7 3.1 0.00011 33.6 2.2 16 138-153 2-17 (168)
370 3bfn_A Kinesin-like protein KI 64.6 3.9 0.00013 38.7 3.1 23 131-153 92-116 (388)
371 2whx_A Serine protease/ntpase/ 64.6 14 0.00046 37.3 7.4 68 173-250 355-423 (618)
372 3lnc_A Guanylate kinase, GMP k 64.4 1.8 6.2E-05 37.5 0.8 20 134-153 25-44 (231)
373 2zan_A Vacuolar protein sortin 64.2 2.8 9.7E-05 40.4 2.2 55 96-153 128-184 (444)
374 1sky_E F1-ATPase, F1-ATP synth 63.9 28 0.00095 33.8 9.1 21 133-153 148-168 (473)
375 3c8u_A Fructokinase; YP_612366 63.9 2.9 0.0001 35.5 2.0 18 135-152 21-38 (208)
376 1e6c_A Shikimate kinase; phosp 63.8 3.6 0.00012 33.4 2.5 17 137-153 3-19 (173)
377 1f2t_A RAD50 ABC-ATPase; DNA d 63.8 3.3 0.00011 33.3 2.2 15 138-152 25-39 (149)
378 3pxg_A Negative regulator of g 63.7 4.5 0.00015 39.3 3.5 18 136-153 201-218 (468)
379 1w36_B RECB, exodeoxyribonucle 63.6 12 0.00042 40.8 7.3 59 138-196 18-79 (1180)
380 1zak_A Adenylate kinase; ATP:A 63.5 3.7 0.00013 35.1 2.6 18 136-153 5-22 (222)
381 1nn5_A Similar to deoxythymidy 63.3 3.3 0.00011 34.9 2.3 20 134-153 7-26 (215)
382 1nij_A Hypothetical protein YJ 62.9 5.8 0.0002 36.3 4.0 37 245-284 151-187 (318)
383 3rc3_A ATP-dependent RNA helic 62.8 26 0.00087 35.7 9.1 73 176-257 323-401 (677)
384 2pez_A Bifunctional 3'-phospho 62.8 3.2 0.00011 34.1 2.0 19 135-153 4-22 (179)
385 1zuh_A Shikimate kinase; alpha 62.6 3.6 0.00012 33.4 2.2 17 137-153 8-24 (168)
386 1nks_A Adenylate kinase; therm 62.6 3.4 0.00012 34.1 2.1 16 138-153 3-18 (194)
387 1z5z_A Helicase of the SNF2/RA 62.5 29 0.001 30.7 8.5 96 144-255 92-193 (271)
388 3kta_A Chromosome segregation 62.4 3.4 0.00012 34.0 2.1 15 138-152 28-42 (182)
389 1xjc_A MOBB protein homolog; s 62.0 10 0.00034 31.3 4.9 15 138-152 6-20 (169)
390 3cf2_A TER ATPase, transitiona 62.0 3.2 0.00011 43.3 2.1 57 96-153 471-528 (806)
391 1e4v_A Adenylate kinase; trans 61.9 3.5 0.00012 35.1 2.2 16 138-153 2-17 (214)
392 4gl2_A Interferon-induced heli 61.8 4.8 0.00016 41.0 3.5 73 173-251 400-488 (699)
393 1in4_A RUVB, holliday junction 61.8 4.8 0.00016 37.1 3.2 17 137-153 52-68 (334)
394 2z83_A Helicase/nucleoside tri 61.6 7.2 0.00025 37.6 4.6 68 173-250 190-258 (459)
395 3qf7_A RAD50; ABC-ATPase, ATPa 61.6 3.5 0.00012 38.7 2.2 16 138-153 25-40 (365)
396 3f9v_A Minichromosome maintena 61.4 3.8 0.00013 41.2 2.6 16 138-153 329-344 (595)
397 2yvu_A Probable adenylyl-sulfa 61.4 3.5 0.00012 34.1 2.0 19 135-153 12-30 (186)
398 3asz_A Uridine kinase; cytidin 61.4 3.3 0.00011 35.0 1.9 18 135-152 5-22 (211)
399 2vli_A Antibiotic resistance p 61.3 3.2 0.00011 34.1 1.7 19 135-153 4-22 (183)
400 2og2_A Putative signal recogni 61.1 6.4 0.00022 36.9 3.9 17 137-153 158-174 (359)
401 2rep_A Kinesin-like protein KI 61.1 4.6 0.00016 38.1 2.9 25 129-153 107-133 (376)
402 1qf9_A UMP/CMP kinase, protein 61.0 3.8 0.00013 33.8 2.1 16 138-153 8-23 (194)
403 3k1j_A LON protease, ATP-depen 61.0 6.1 0.00021 39.7 4.0 24 130-153 54-77 (604)
404 1cke_A CK, MSSA, protein (cyti 61.0 3.8 0.00013 35.0 2.2 17 137-153 6-22 (227)
405 1g41_A Heat shock protein HSLU 60.9 3.9 0.00013 39.5 2.5 18 136-153 50-67 (444)
406 2wwf_A Thymidilate kinase, put 60.9 4.1 0.00014 34.3 2.4 19 135-153 9-27 (212)
407 3a4m_A L-seryl-tRNA(SEC) kinas 60.8 3.5 0.00012 36.5 2.0 18 136-153 4-21 (260)
408 3tlx_A Adenylate kinase 2; str 60.7 4.1 0.00014 35.6 2.4 19 135-153 28-46 (243)
409 3tif_A Uncharacterized ABC tra 60.6 3.5 0.00012 36.0 1.9 32 243-274 161-192 (235)
410 2jaq_A Deoxyguanosine kinase; 60.6 4 0.00014 34.0 2.2 16 138-153 2-17 (205)
411 3be4_A Adenylate kinase; malar 60.2 4.1 0.00014 34.8 2.2 18 136-153 5-22 (217)
412 2qt1_A Nicotinamide riboside k 60.2 3.1 0.0001 35.2 1.4 20 134-153 19-38 (207)
413 1ak2_A Adenylate kinase isoenz 60.1 4.5 0.00015 35.0 2.5 19 135-153 15-33 (233)
414 2ius_A DNA translocase FTSK; n 60.0 12 0.00041 36.8 5.8 23 136-159 167-189 (512)
415 1ry6_A Internal kinesin; kines 60.0 5.8 0.0002 37.1 3.4 19 135-153 82-102 (360)
416 3oiy_A Reverse gyrase helicase 59.9 11 0.00036 35.5 5.3 72 173-255 252-330 (414)
417 4a2q_A RIG-I, retinoic acid in 59.9 17 0.00059 37.6 7.4 77 172-254 630-721 (797)
418 3sr0_A Adenylate kinase; phosp 59.8 5.4 0.00018 34.1 2.9 17 137-153 1-17 (206)
419 3fmp_B ATP-dependent RNA helic 59.7 1.9 6.5E-05 41.8 0.0 70 173-250 333-406 (479)
420 2if2_A Dephospho-COA kinase; a 59.4 4.2 0.00014 34.1 2.1 16 138-153 3-18 (204)
421 3h1t_A Type I site-specific re 59.3 14 0.00046 36.8 6.3 78 172-255 438-527 (590)
422 3euj_A Chromosome partition pr 59.3 7.3 0.00025 38.0 4.1 39 244-287 413-451 (483)
423 1ukz_A Uridylate kinase; trans 59.0 4.4 0.00015 34.0 2.2 17 137-153 16-32 (203)
424 1zu4_A FTSY; GTPase, signal re 58.9 9.3 0.00032 35.0 4.6 18 136-153 105-122 (320)
425 2v9p_A Replication protein E1; 58.6 5.2 0.00018 36.5 2.8 19 134-152 124-142 (305)
426 2zj8_A DNA helicase, putative 58.5 17 0.00059 37.1 7.1 77 173-256 237-348 (720)
427 2ce7_A Cell division protein F 58.2 4.2 0.00014 39.7 2.2 52 97-153 11-66 (476)
428 1jjv_A Dephospho-COA kinase; P 58.0 4.6 0.00016 33.9 2.2 16 138-153 4-19 (206)
429 2p6r_A Afuhel308 helicase; pro 57.9 15 0.00052 37.4 6.5 72 173-250 242-345 (702)
430 2cbz_A Multidrug resistance-as 57.9 4.1 0.00014 35.6 1.9 19 134-152 29-47 (237)
431 4e22_A Cytidylate kinase; P-lo 57.7 5 0.00017 35.3 2.5 19 135-153 26-44 (252)
432 1gku_B Reverse gyrase, TOP-RG; 57.4 13 0.00046 39.9 6.2 72 173-255 275-352 (1054)
433 2bbw_A Adenylate kinase 4, AK4 57.3 5.3 0.00018 34.8 2.5 18 136-153 27-44 (246)
434 3auy_A DNA double-strand break 57.2 4.4 0.00015 37.9 2.1 15 139-153 28-42 (371)
435 2pbr_A DTMP kinase, thymidylat 57.2 5 0.00017 33.1 2.2 16 138-153 2-17 (195)
436 1sgw_A Putative ABC transporte 56.7 4.8 0.00016 34.7 2.1 31 243-273 149-179 (214)
437 2p5t_B PEZT; postsegregational 56.5 3.5 0.00012 36.3 1.2 17 137-153 33-49 (253)
438 3pxi_A Negative regulator of g 56.3 6.8 0.00023 40.5 3.5 18 136-153 201-218 (758)
439 2xb4_A Adenylate kinase; ATP-b 56.3 5.2 0.00018 34.4 2.2 16 138-153 2-17 (223)
440 2i3b_A HCR-ntpase, human cance 55.8 7.9 0.00027 32.5 3.3 42 243-287 103-146 (189)
441 3cmw_A Protein RECA, recombina 55.6 14 0.00049 41.7 6.0 39 136-183 34-72 (1706)
442 4akg_A Glutathione S-transfera 55.4 4.8 0.00016 47.6 2.3 21 133-153 1264-1284(2695)
443 3co5_A Putative two-component 55.2 39 0.0013 26.3 7.3 42 246-288 76-118 (143)
444 2ff7_A Alpha-hemolysin translo 55.1 4.8 0.00016 35.5 1.8 41 243-284 161-201 (247)
445 4a2p_A RIG-I, retinoic acid in 55.1 25 0.00085 34.1 7.3 77 172-254 389-480 (556)
446 2pze_A Cystic fibrosis transme 55.0 4.8 0.00017 34.9 1.8 19 134-152 32-50 (229)
447 1uf9_A TT1252 protein; P-loop, 54.9 5.4 0.00019 33.2 2.1 16 138-153 10-25 (203)
448 3gfo_A Cobalt import ATP-bindi 54.8 4.7 0.00016 36.2 1.8 19 134-152 32-50 (275)
449 2ghi_A Transport protein; mult 54.5 5 0.00017 35.6 1.9 39 245-284 173-211 (260)
450 3o38_A Short chain dehydrogena 54.4 1E+02 0.0036 26.4 11.5 82 134-230 20-110 (266)
451 2z0h_A DTMP kinase, thymidylat 54.3 5.9 0.0002 32.8 2.2 15 139-153 3-17 (197)
452 3p32_A Probable GTPase RV1496/ 54.1 96 0.0033 28.4 10.9 16 138-153 81-96 (355)
453 2pcj_A ABC transporter, lipopr 53.8 5 0.00017 34.7 1.7 41 243-283 156-196 (224)
454 1vht_A Dephospho-COA kinase; s 53.6 5.2 0.00018 34.0 1.8 17 137-153 5-21 (218)
455 4g1u_C Hemin import ATP-bindin 53.5 5.2 0.00018 35.7 1.8 39 245-283 165-204 (266)
456 3tbk_A RIG-I helicase domain; 53.5 33 0.0011 33.2 7.9 74 172-251 388-476 (555)
457 3fho_A ATP-dependent RNA helic 53.5 4 0.00014 40.0 1.2 74 172-253 356-433 (508)
458 3qks_A DNA double-strand break 53.3 6.2 0.00021 33.4 2.2 15 138-152 25-39 (203)
459 1c9k_A COBU, adenosylcobinamid 53.2 9.9 0.00034 31.7 3.4 33 139-184 2-34 (180)
460 1g6h_A High-affinity branched- 53.1 5.4 0.00018 35.3 1.8 41 244-284 170-210 (257)
461 1htw_A HI0065; nucleotide-bind 52.9 5.1 0.00017 32.6 1.5 18 134-151 31-48 (158)
462 1ji0_A ABC transporter; ATP bi 52.6 5.5 0.00019 34.8 1.8 39 243-281 155-194 (240)
463 3dmq_A RNA polymerase-associat 52.4 15 0.00051 39.2 5.5 77 172-255 502-584 (968)
464 1mv5_A LMRA, multidrug resista 52.4 4.8 0.00016 35.3 1.4 39 245-284 157-195 (243)
465 1rz3_A Hypothetical protein rb 52.4 6.3 0.00022 33.1 2.1 18 136-153 22-39 (201)
466 1b0u_A Histidine permease; ABC 52.3 5.7 0.00019 35.3 1.9 41 243-283 169-209 (262)
467 4a2w_A RIG-I, retinoic acid in 52.1 16 0.00055 38.8 5.6 77 172-254 630-721 (936)
468 1np6_A Molybdopterin-guanine d 52.1 18 0.00062 29.8 4.9 15 138-152 8-22 (174)
469 2zu0_C Probable ATP-dependent 51.8 5.8 0.0002 35.3 1.9 39 245-283 182-220 (267)
470 2d2e_A SUFC protein; ABC-ATPas 51.8 5.8 0.0002 34.9 1.8 39 245-283 161-199 (250)
471 2ixe_A Antigen peptide transpo 51.8 5.9 0.0002 35.4 1.9 41 243-283 172-213 (271)
472 2qi9_C Vitamin B12 import ATP- 51.2 6 0.00021 34.9 1.8 37 248-284 154-190 (249)
473 2dhr_A FTSH; AAA+ protein, hex 51.0 6.5 0.00022 38.6 2.2 52 97-153 26-81 (499)
474 2yz2_A Putative ABC transporte 50.9 6.2 0.00021 35.1 1.9 42 243-284 154-195 (266)
475 1vpl_A ABC transporter, ATP-bi 50.9 6.2 0.00021 34.9 1.9 41 243-283 162-202 (256)
476 3qkt_A DNA double-strand break 50.8 6.8 0.00023 36.1 2.2 16 138-153 25-40 (339)
477 3nh6_A ATP-binding cassette SU 50.7 5.2 0.00018 36.5 1.4 39 244-283 207-245 (306)
478 3tqf_A HPR(Ser) kinase; transf 50.7 8.7 0.0003 32.1 2.6 19 135-153 15-33 (181)
479 2nq2_C Hypothetical ABC transp 50.6 6.2 0.00021 34.9 1.8 41 243-283 144-185 (253)
480 2olj_A Amino acid ABC transpor 50.4 6.4 0.00022 35.0 1.9 42 243-284 175-216 (263)
481 1ltq_A Polynucleotide kinase; 50.4 7 0.00024 35.0 2.2 16 138-153 4-19 (301)
482 1odf_A YGR205W, hypothetical 3 50.4 7.1 0.00024 35.3 2.2 16 138-153 33-48 (290)
483 1ypw_A Transitional endoplasmi 50.3 6.3 0.00021 41.2 2.1 19 135-153 237-255 (806)
484 2r2a_A Uncharacterized protein 49.8 4.3 0.00015 34.5 0.7 40 246-285 88-132 (199)
485 2ihy_A ABC transporter, ATP-bi 49.7 6.5 0.00022 35.3 1.8 19 134-152 45-63 (279)
486 3ice_A Transcription terminati 49.7 1.1E+02 0.0038 29.0 10.3 32 122-153 157-191 (422)
487 2f1r_A Molybdopterin-guanine d 49.6 5.4 0.00018 33.0 1.2 16 138-153 4-19 (171)
488 2iut_A DNA translocase FTSK; n 49.5 21 0.00071 35.6 5.6 25 137-162 215-239 (574)
489 1r6b_X CLPA protein; AAA+, N-t 49.4 11 0.00038 38.8 3.8 16 138-153 490-505 (758)
490 1tf7_A KAIC; homohexamer, hexa 49.4 16 0.00053 36.0 4.7 127 134-286 279-417 (525)
491 2jeo_A Uridine-cytidine kinase 49.3 6.6 0.00022 34.2 1.8 19 135-153 24-42 (245)
492 4h1g_A Maltose binding protein 48.8 11 0.00036 38.8 3.5 25 129-153 454-480 (715)
493 1jr3_D DNA polymerase III, del 48.8 38 0.0013 30.8 7.0 66 243-309 74-142 (343)
494 2grj_A Dephospho-COA kinase; T 48.7 8.2 0.00028 32.5 2.2 16 138-153 14-29 (192)
495 2l82_A Designed protein OR32; 48.3 29 0.00099 26.1 4.9 38 346-383 18-55 (162)
496 2h92_A Cytidylate kinase; ross 48.2 9.5 0.00032 32.2 2.6 18 136-153 3-20 (219)
497 2vhj_A Ntpase P4, P4; non- hyd 48.2 10 0.00034 35.0 2.8 21 135-155 122-142 (331)
498 1fuu_A Yeast initiation factor 48.0 3.8 0.00013 38.0 0.0 71 173-251 259-333 (394)
499 1tf7_A KAIC; homohexamer, hexa 48.0 14 0.00047 36.4 4.0 29 134-162 37-65 (525)
500 1qvr_A CLPB protein; coiled co 47.9 8 0.00027 40.6 2.4 16 138-153 590-605 (854)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-43 Score=348.70 Aligned_cols=286 Identities=28% Similarity=0.396 Sum_probs=247.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
+.+..+|+++++++.++++|.++||.+|||+|.++|+.+++|+|+++++|||||||++|++|++..+...... ....++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~ 130 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRP 130 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCC
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCc
Confidence 3456789999999999999999999999999999999999999999999999999999999999998763221 123477
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
++|||+||++|+.|+++.+++++. ++.+.+++||.....+...+..+++|+|+||++|.+++.++...+.++++||||
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 899999999999999999999874 467788999999888888888899999999999999999888889999999999
Q ss_pred CcccccCCChHHHHHHHHHHC--CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 253 EADQMLSVGFAEDVEVILERL--PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l--~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
|||+|++++|...+..++..+ ++++|+++||||+|+.+..++..++.++..+.+... ......+.+.+..+. ...
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~i~~~~~~~~-~~~ 287 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--GGACSDVKQTIYEVN-KYA 287 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--TCCCTTEEEEEEECC-GGG
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--cccccccceEEEEeC-cHH
Confidence 999999999999999999885 578999999999999999999999999998876422 244556777766654 344
Q ss_pred hHHHHHHH-------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 KVENALFS-------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k~~~l~~~-------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
|...++.. ..+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 288 k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 354 (434)
T 2db3_A 288 KRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354 (434)
T ss_dssp HHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEE
T ss_pred HHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 54444333 2377888999999999999999999999999999999999998874
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.1e-41 Score=328.05 Aligned_cols=281 Identities=30% Similarity=0.458 Sum_probs=245.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.....|+++++++.++++|.++||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~ 107 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQ 107 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999987632 134678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++||++|+.|+++.+.+++. ++.+..++|+.........+..+++|+|+||+++.+.+..+...+.++++|||||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 99999999999999999999875 4567778899888888888888899999999999999998888899999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+++|...+..++..++++.|++++|||+++.+.++...++.+|..+.+. .......++.+++........+.+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHH
Confidence 999999999999999999999999999999999999999999999999887653 233456677888777766555655
Q ss_pred HHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 266 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (410)
T 2j0s_A 266 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 330 (410)
T ss_dssp HHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred HHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEE
Confidence 54332 2367788888999999999999999999999999999999998874
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=323.40 Aligned_cols=286 Identities=29% Similarity=0.422 Sum_probs=240.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc--------
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK-------- 167 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~-------- 167 (384)
.+..+|+++++++.++++|..+||..|||+|.++|+.++.|+|+++++|||+|||++|++|++..+......
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 445679999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred ----cCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC
Q 016712 168 ----HGRGRNPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL 241 (384)
Q Consensus 168 ----~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~ 241 (384)
.....++++||++||++|+.|+++.+++++. ++.+..++|+.....+...+..+++|+|+||++|.+.+..+..
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 0112347899999999999999999998764 5678888999888888888888899999999999999998888
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHH--CCC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCC
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG 317 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~--l~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (384)
.+.++++|||||+|++.+++|...+..++.. ++. ..|++++|||+++.+..+...++.++..+.+.. ......+
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 249 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSEN 249 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSS
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccC
Confidence 8999999999999999999999999999885 333 689999999999999999999999998877632 2344566
Q ss_pred eEEEEEEeccchhhHHHHHHH---------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcc
Q 016712 318 ISLYSIATSMNMQKVENALFS---------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVS 382 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~~---------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~ 382 (384)
+.+.++... ...+...+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+++
T Consensus 250 i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 250 ITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp EEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred ceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 776666654 34444444332 22678888899999999999999999999999999999999988
Q ss_pred cC
Q 016712 383 IY 384 (384)
Q Consensus 383 V~ 384 (384)
|+
T Consensus 329 vl 330 (417)
T 2i4i_A 329 IL 330 (417)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=316.73 Aligned_cols=280 Identities=28% Similarity=0.411 Sum_probs=236.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
....|+++++++.+.+.|.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 111 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 111 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSCCE
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCceeE
Confidence 3457999999999999999999999999999999999999999999999999999999999987643 1246789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
||++||++|+.|+.+.+++++. +..+....|+.........+. .+++|+|+||++|.+.+..+...+.++++|||||
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred EEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 9999999999999999999864 456677788887777666665 5689999999999999998888889999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+++|...+..++..++++.|+++||||+++.+..+...++.++..+... ........+.+++......+.+..
T Consensus 192 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 192 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK--KEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC--CCCCCTTSCCEEEEECSSSTTHHH
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec--CCccCCCCceEEEEEeChHHhHHH
Confidence 999999999999999999999999999999999999999999999999888653 233455667777777766666666
Q ss_pred HHHHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+.... .+.++.++..|...++.+..+||+|+.++|++++++|++|+++|+
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 334 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVL 334 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CE
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 554332 377888999999999999999999999999999999999998874
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-38 Score=311.21 Aligned_cols=279 Identities=29% Similarity=0.436 Sum_probs=237.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
..+..|+++++++.++++|.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+.. ...+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 34568999999999999999999999999999999999999999999999999999999999987632 124668
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++|+++|+.|+++.+++++. ++.+...+|+.........+..+++|+|+||+++.+.+......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999876 4667778888877777677777899999999999999988888899999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+.+|...+..++..+++..|+++||||+++.+......++.++..+.+... ....++.+++.... ...+..
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~k~~ 247 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE---LTLKGITQYYAFVE-ERQKLH 247 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS---CBCTTEEEEEEECC-GGGHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc---cccCCceeEEEEec-hhhHHH
Confidence 99999888999999999999889999999999999999999999999988765432 34456666666554 333433
Q ss_pred HHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+.. +..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 248 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (400)
T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312 (400)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEE
Confidence 3322 22377888899999999999999999999999999999999998874
No 6
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.8e-39 Score=295.09 Aligned_cols=214 Identities=36% Similarity=0.645 Sum_probs=194.3
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 94 SKDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 94 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.+.+..+|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... .....+
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~ 102 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDG 102 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCC
Confidence 4456678999999999999999999999999999999999999999999999999999999999998864221 112357
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
+++|||+||++|+.|+++.++++.. ++.+.+++|+.........+..+++|+|+||+++.+++..+...++++++|||
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 8899999999999999999988753 57788899999988888888889999999999999999988888999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG 308 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 308 (384)
||||++++++|...+..+++.+++++|+++||||+|+.+.+++..++++|+.|.+.+
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999999998753
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.4e-38 Score=305.81 Aligned_cols=278 Identities=25% Similarity=0.410 Sum_probs=235.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.++++|.++||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.. ...++++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~li 81 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 81 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEE
Confidence 46999999999999999999999999999999999999999999999999999999999987632 123568999
Q ss_pred EecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++||++|+.|+.+.++++.. ++.+..++|+.........+..+ ++|+|+||+++...+......+.++++||||||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 99999999999999998753 67788889988877766666554 799999999999999888888999999999999
Q ss_pred ccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 255 DQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 255 h~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
|++.++ ++...+..++...+.+.|++++|||+++.+..+...++.++..+.+... .......+.+++.... ...+..
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 239 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE-TKLTLHGLQQYYVKLK-DNEKNR 239 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC-CCCCCTTCEEEEEECC-GGGHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc-cccCcccceEEEEEcC-chhHHH
Confidence 999884 6888899999999889999999999999999999999999998876433 2234455666666554 334444
Q ss_pred HHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...|+.+..+||+|+.++|++++++|++|+++|+
T Consensus 240 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 304 (391)
T 1xti_A 240 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 304 (391)
T ss_dssp HHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 33322 2367788899999999999999999999999999999999998874
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=290.39 Aligned_cols=212 Identities=36% Similarity=0.552 Sum_probs=183.4
Q ss_pred CCCCCCCccC-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCC
Q 016712 94 SKDEGLDISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGR 172 (384)
Q Consensus 94 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 172 (384)
.+.+...|++ +++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+...........
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3455677888 799999999999999999999999999999999999999999999999999999998754332222346
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhC-CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESA-PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
++++||++||++|+.|+++.++++. .++.+.+++|+.........+..+++|+|+||+++.+++..+...++++++|||
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 7889999999999999999999985 467888899998888777888888999999999999999888888999999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
||||++.+++|...+..++..+++++|+++||||+|+.+.+++..++++|+.|.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999875
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.8e-38 Score=308.15 Aligned_cols=278 Identities=23% Similarity=0.317 Sum_probs=234.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCC
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRN 173 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 173 (384)
.....|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.. ...+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~ 95 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKY 95 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCS
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCC
Confidence 34567999999999999999999999999999999999987 999999999999999999999987743 1345
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFV 249 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~v 249 (384)
+++||++||++|+.|+++.++++.. ++.+....++...... ...+++|+|+||+++.+++.. ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 6899999999999999999988764 5667777766544322 133579999999999999865 56677899999
Q ss_pred EEeCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc
Q 016712 250 VLDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328 (384)
Q Consensus 250 ViDEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 328 (384)
||||+|++.+ .++...+..+...++.+.|++++|||+++.+..+...++.++..+.+. ........+.+++......
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK--REEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCC--GGGSSCTTEEEEEEECSSH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeec--cccccccCceEEEEEcCCh
Confidence 9999999987 678888999999999999999999999999999999999999888764 3345566777787777666
Q ss_pred hhhHHHHHHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 329 MQKVENALFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 329 ~~k~~~l~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+...+.... .+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 251 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 320 (412)
T 3fht_A 251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 320 (412)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEE
Confidence 66665553322 377889999999999999999999999999999999999998874
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.6e-39 Score=311.70 Aligned_cols=279 Identities=27% Similarity=0.427 Sum_probs=183.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
....|+++++++.++++|.+.||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.. ...++++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 3467999999999999999999999999999999999999999999999999999999999987643 1346789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||++|+++|+.|+++.+.+++. ++.+..++|+.........+. +++|+|+||+++.+.+..+...+.++++||+||+
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999999875 467778888887766655554 5899999999999999888888899999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccch-----
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNM----- 329 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----- 329 (384)
|++.+++|...+..++..++++.|++++|||+++.+..+...++.++..+..... .....++.+++......+
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD--ELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc--cccCCCceEEEEEcCchhhHHHH
Confidence 9999999999999999999999999999999999999999999999988876432 122233333333222111
Q ss_pred ---------hhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 330 ---------QKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 330 ---------~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+...++++..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 250 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 313 (394)
T 1fuu_A 250 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRIL 313 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEE
Confidence 1223345667788889999999889999999999999999999999999998874
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-37 Score=302.29 Aligned_cols=274 Identities=24% Similarity=0.343 Sum_probs=231.1
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
.+|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.. ...++++
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 78 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQA 78 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCccE
Confidence 57999999999999999999999999999999999998 899999999999999999999987633 1346789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||++|+++|+.|+++.+++++. ++.+...+++...... ..+++|+|+||+++.+.+......+.++++|||||+
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 154 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEA 154 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEECh
Confidence 9999999999999999999774 4455556655432221 235899999999999999888888999999999999
Q ss_pred ccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 255 h~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
|++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+.... .......+.+.+........+..
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHH
T ss_pred hhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHH
Confidence 99987 6788999999999999999999999999999999999999988876532 23445566677666655555555
Q ss_pred HHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 297 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 297 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEE
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEE
Confidence 44332 2377888999999999999999999999999999999999998874
No 12
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.6e-38 Score=278.46 Aligned_cols=201 Identities=35% Similarity=0.586 Sum_probs=184.4
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.+|+++++++.++++|.++||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~l 75 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAM 75 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEE
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEE
Confidence 457999999999999999999999999999999999999999999999999999999999987632 13467899
Q ss_pred EEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
|++||++|+.|+++.++++.. +..+..++|+.........+..+++|+|+||+++.+.+..+...++++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 999999999999999998864 56778888988887777777788999999999999999888888999999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEE
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTV 304 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 304 (384)
|++.+.+|...+..++..+++++|+++||||+|+.+.+++..++.+|+.|
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999899999999999999999999999999876
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-37 Score=297.90 Aligned_cols=273 Identities=30% Similarity=0.479 Sum_probs=232.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG-RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
...+|+++++++.++++|.++||.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ..+.+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 3467999999999999999999999999999999999988 699999999999999999999887632 34678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+||++|+++|+.|+++.+.+++. ++.+...+|+.........+. +++|+|+||+++.+.+..+...+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 99999999999999999999764 466777888887766655554 589999999999999988888899999999999
Q ss_pred cccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHH
Q 016712 254 ADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVE 333 (384)
Q Consensus 254 ah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 333 (384)
+|++.+++|...+..++..++++.+++++|||+++....+...++.++..+.... ...+.+.+.... ...+.+
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~ 228 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI------NANIEQSYVEVN-ENERFE 228 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS------SSSSEEEEEECC-GGGHHH
T ss_pred chHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC------CCCceEEEEEeC-hHHHHH
Confidence 9999999999999999999999999999999999999999999998877765421 224445554443 345555
Q ss_pred HHHHH-------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 334 NALFS-------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 334 ~l~~~-------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+.+|+
T Consensus 229 ~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 292 (367)
T 1hv8_A 229 ALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292 (367)
T ss_dssp HHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 44332 3377888999999999999999999999999999999999998874
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.2e-38 Score=322.23 Aligned_cols=288 Identities=25% Similarity=0.381 Sum_probs=230.2
Q ss_pred CCCCCCccCCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc
Q 016712 95 KDEGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH 168 (384)
Q Consensus 95 ~~~~~~f~~l~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~ 168 (384)
......|+++. +++.++++|.++||..|+|+|.++|+.++ .|+|+++++|||+|||++|++|++..+......
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~- 91 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD- 91 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-
Confidence 34445565554 99999999999999999999999999999 788999999999999999999999988763221
Q ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHHhC------CCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHcc-C
Q 016712 169 GRGRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRN-A 240 (384)
Q Consensus 169 ~~~~~~~~lvl~Pt~~La~q~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~-~ 240 (384)
...++++|||+||++|+.|+++.+++++ +.+.+..+.|+.........+.. +++|+|+||++|.+++... .
T Consensus 92 -~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~ 170 (579)
T 3sqw_A 92 -SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSN 170 (579)
T ss_dssp -STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred -ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccc
Confidence 1336789999999999999999999864 34567788888887777766644 7999999999999988764 4
Q ss_pred CCCCCccEEEEeCcccccCCChHHHHHHHHHHCC-------CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC--CCc
Q 016712 241 LNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSD 311 (384)
Q Consensus 241 ~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~ 311 (384)
..++++++|||||||++++++|...+..++..++ .++|+++||||+++.+..++..++.++..+.+.. ...
T Consensus 171 ~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 250 (579)
T 3sqw_A 171 KFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE 250 (579)
T ss_dssp HHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS
T ss_pred cccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccc
Confidence 4678899999999999999999999998887763 3789999999999999999999999887665432 223
Q ss_pred ccccCCeEEEEEEeccchhhHHHHHH-------------------HHhHhHHHHHHHHHhh---cceEEEecCCCChhhh
Q 016712 312 QKLADGISLYSIATSMNMQKVENALF-------------------SLKQNVMQTAWLMLWL---KVIIVSLCMGISHKAR 369 (384)
Q Consensus 312 ~~~~~~i~~~~~~~~~~~~k~~~l~~-------------------~~~~~~~~~~~~l~~~---~~~v~~~hg~m~~~eR 369 (384)
......+.+.+........+....+. ...+.++.++..|... ++.+..+||+|++++|
T Consensus 251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 251 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred cccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 34445566666655543332222211 1225677888888776 8999999999999999
Q ss_pred hchhhhhhcCCcccC
Q 016712 370 GRGPFQLSEMDVSIY 384 (384)
Q Consensus 370 ~~il~~F~~~~~~V~ 384 (384)
++++++|++|+++|+
T Consensus 331 ~~~~~~F~~g~~~vL 345 (579)
T 3sqw_A 331 TSLVKRFKKDESGIL 345 (579)
T ss_dssp HHHHHHHHHCSSEEE
T ss_pred HHHHHHhhcCCCeEE
Confidence 999999999998874
No 15
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.3e-37 Score=276.71 Aligned_cols=204 Identities=48% Similarity=0.834 Sum_probs=187.9
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
+|+++++++.+.+.|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.... ....++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEEEE
Confidence 589999999999999999999999999999999999999999999999999999999998874311 12357789999
Q ss_pred ecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+||++|+.|+++.+++++..+.+..++|+.........+..+++|+|+||+++.+.+..+...+.++++||+||||++.+
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999999999988888899999888777777778899999999999999988888899999999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
.+|...+..++..++++.|+++||||+++.+.++++.++.+|..|.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999998865
No 16
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-37 Score=317.92 Aligned_cols=287 Identities=25% Similarity=0.382 Sum_probs=228.7
Q ss_pred CCCCCccCCC----CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccC
Q 016712 96 DEGLDISKLD----ISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHG 169 (384)
Q Consensus 96 ~~~~~f~~l~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~ 169 (384)
.....|+++. +++.++++|.++||..|+|+|.++|+.++ .++|+++++|||+|||++|++|+++.+......
T Consensus 65 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-- 142 (563)
T 3i5x_A 65 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-- 142 (563)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--
Confidence 3445565554 99999999999999999999999999999 678999999999999999999999998764321
Q ss_pred CCCCCEEEEEecCHHHHHHHHHHHHHhC------CCCceEEEECCCChHHHHHHH-hcCCCEEEECchhHHHHHHcc-CC
Q 016712 170 RGRNPLCLVLAPTRELAKQVEKEFHESA------PSLDTICVYGGTPISHQMRAL-DYGVDAVVGTPGRVIDLIKRN-AL 241 (384)
Q Consensus 170 ~~~~~~~lvl~Pt~~La~q~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~-~~~~~IlV~Tp~~l~~~l~~~-~~ 241 (384)
...++++|||+||++|+.|+++.++++. ....+..++|+.........+ ..+++|+|+||++|.+++... ..
T Consensus 143 ~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 222 (563)
T 3i5x_A 143 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 222 (563)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccc
Confidence 1235689999999999999999999853 245577788888877766666 447999999999999988764 34
Q ss_pred CCCCccEEEEeCcccccCCChHHHHHHHHHHCC-------CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecC--CCcc
Q 016712 242 NLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-------QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVG--DSDQ 312 (384)
Q Consensus 242 ~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~ 312 (384)
.++++++|||||||++++++|...+..++..++ .++|+++||||+++.+..++..++.++..+.+.. ....
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 302 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCc
Confidence 578899999999999999999999998887753 3789999999999999999999998887665432 2223
Q ss_pred cccCCeEEEEEEeccchhhHHHHHH-------------------HHhHhHHHHHHHHHhh---cceEEEecCCCChhhhh
Q 016712 313 KLADGISLYSIATSMNMQKVENALF-------------------SLKQNVMQTAWLMLWL---KVIIVSLCMGISHKARG 370 (384)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~-------------------~~~~~~~~~~~~l~~~---~~~v~~~hg~m~~~eR~ 370 (384)
.....+.+.+........+....+. ...+.++.++..|... ++.+..+||+|++++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 303 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382 (563)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Confidence 4445566666655543333222211 1226667788888776 89999999999999999
Q ss_pred chhhhhhcCCcccC
Q 016712 371 RGPFQLSEMDVSIY 384 (384)
Q Consensus 371 ~il~~F~~~~~~V~ 384 (384)
+++++|++|+++|+
T Consensus 383 ~~~~~f~~g~~~vL 396 (563)
T 3i5x_A 383 SLVKRFKKDESGIL 396 (563)
T ss_dssp HHHHHHHHCSSEEE
T ss_pred HHHHHHhcCCCCEE
Confidence 99999999998874
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=319.45 Aligned_cols=276 Identities=23% Similarity=0.334 Sum_probs=172.9
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
...|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.. ...+++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~~ 164 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQ 164 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSCC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCCc
Confidence 457999999999999999999999999999999999987 899999999999999999999987633 123568
Q ss_pred EEEEecCHHHHHHHHHHHHHhC---CCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESA---PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVL 251 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vVi 251 (384)
+|||+||++|+.|+++.++++. +++.+.+..++...... ...+++|+|+||++|.+++.. ..+.+.++++|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999988888764 35667777666543322 133579999999999999865 4567889999999
Q ss_pred eCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchh
Q 016712 252 DEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQ 330 (384)
Q Consensus 252 DEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 330 (384)
||+|++++ .+|...+..+.+.++.++|++++|||+++.+..+...++.++..+.+... ......+.++++.+.....
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc--ccCcCCceEEEEEeCCHHH
Confidence 99999987 57888889999999999999999999999999999999999988876432 2333444444443332222
Q ss_pred h--------------HHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 331 K--------------VENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 331 k--------------~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+ ...+++...+.++.++..|...+..+..+||+|+..+|++++++|++|+++|+
T Consensus 320 ~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iL 387 (479)
T 3fmp_B 320 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 2 23345567788889999999999999999999999999999999999999875
No 18
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-37 Score=281.63 Aligned_cols=204 Identities=33% Similarity=0.535 Sum_probs=182.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.+...|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~~~~ 94 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQ 94 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCC
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCce
Confidence 44567999999999999999999999999999999999999999999999999999999999988643 134678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+||++||++|+.|+++.+++++. ++.+.+++|+.........+ .+++|+|+||+++.+.+..+...++++++||||
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 99999999999999999999864 57788888888776665555 468999999999999998888888999999999
Q ss_pred CcccccCCC-hHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVG-FAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~-~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++.+++ |...+..+++.++.++|+++||||+|+.+.+++..++.+|..|.+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999987 999999999999999999999999999999999999999998865
No 19
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-38 Score=283.23 Aligned_cols=202 Identities=34% Similarity=0.587 Sum_probs=182.3
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~li 77 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVI 77 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEE
Confidence 56999999999999999999999999999999999999999999999999999999999988643 124678999
Q ss_pred EecCHHHHHHHHHHHHHhCC------CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 179 LAPTRELAKQVEKEFHESAP------SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
++||++|+.|+++.++++.. ++.+.+++|+.........+..+++|+|+||+++.+.+..+...+.++++||||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988764 456777888876665555555678999999999999998888888999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++.+++|...+..++..+++++|+++||||+|+.+.++++.++.+|..|.+
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999999999999999999999999999999999998876
No 20
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=282.49 Aligned_cols=203 Identities=34% Similarity=0.584 Sum_probs=185.9
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
...|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~l 115 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFAL 115 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCEE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceEE
Confidence 4679999999999999999999999999999999999999999999999999999999999988652 2467899
Q ss_pred EEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEEEeCc
Q 016712 178 VLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEA 254 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vViDEa 254 (384)
|++||++|+.|+++.+++++. ++.+.+++|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||||||
T Consensus 116 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 116 VLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp EECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 999999999999999998754 5678888999888777777788899999999999999876 4567899999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|++.+++|...+..++..+++++|+++||||+++.+.+++..++.+|+.|.+
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999998875
No 21
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.5e-37 Score=282.87 Aligned_cols=205 Identities=33% Similarity=0.551 Sum_probs=175.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
.+..+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~ 100 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQ 100 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCC
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999988632 124678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEe
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLD 252 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViD 252 (384)
+||++||++|+.|+++.+++++. ++.+..++|+.....+...+..+ ++|+|+||+++.+.+..+...+.++++||||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 99999999999999999999875 45677778887766666666555 8999999999999998888889999999999
Q ss_pred CcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEe
Q 016712 253 EADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 253 Eah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 306 (384)
|||++.+++|...+..+++.++.++|+++||||+|+.+.+++..++++|+.|.+
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999998865
No 22
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=292.91 Aligned_cols=202 Identities=27% Similarity=0.443 Sum_probs=179.2
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
...+|+++++++.++++|.++||..||++|.++|+.++.| +|+++++|||||||++|++|++..+.. ...++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~ 163 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 163 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCc
Confidence 4568999999999999999999999999999999999998 999999999999999999999988743 23467
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVV 250 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vV 250 (384)
++|||+||++||.|+++.++.++. ++.+.+..|+....... ..+++|+||||++|.+++.. +.+.++++++||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEE
Confidence 899999999999999999998764 56777777776543321 44689999999999999965 567789999999
Q ss_pred EeCcccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 251 LDEADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 251 iDEah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
|||||+|++ .+|...+..+++.+++++|+++||||+++.+..++..++.+|+.|.+.
T Consensus 241 lDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999997 689999999999999999999999999999999999999999999874
No 23
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-37 Score=285.85 Aligned_cols=211 Identities=36% Similarity=0.595 Sum_probs=186.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhc---cCCCCC
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRN 173 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~~~~ 173 (384)
+...|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+...... .....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 44679999999999999999999999999999999999999999999999999999999999988653211 012345
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 174 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 174 ~~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
+++|||+||++|+.|+++.+++++. ++.+..++|+.....+...+..+++|+|+||++|.+.+..+...++++++|||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 7899999999999999999998764 46677888998888887888888999999999999999988888999999999
Q ss_pred eCcccccCCChHHHHHHHHHHC--CC--CCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 252 DEADQMLSVGFAEDVEVILERL--PQ--NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l--~~--~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
||||++++++|+..+..++..+ +. ++|+++||||+++.+..++..++.+|+.|.+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999953 44 78999999999999999999999999999874
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=276.78 Aligned_cols=210 Identities=31% Similarity=0.532 Sum_probs=183.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
..+...|+++++++.+.+.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... ....++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~ 98 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGL 98 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCc
Confidence 345567999999999999999999999999999999999999999999999999999999999998865321 112467
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vVi 251 (384)
++||++||++|+.|+++.+++++.. +.+.+++|+.........+ .+++|+|+||+++.+.+... ...+.++++|||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 8999999999999999999998753 6777888887776665555 46899999999999988765 567889999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
||||++.+++|...+..++..+++++|+++||||+++.+.++++.++.+|..|.+.
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998763
No 25
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.1e-36 Score=274.24 Aligned_cols=204 Identities=33% Similarity=0.552 Sum_probs=176.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
....|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~ 85 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 85 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceE
Confidence 3467999999999999999999999999999999999999999999999999999999999988743 1346789
Q ss_pred EEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 177 LVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
||++||++|+.|+++.+++++. ++.+..++|+.........+.. ++|+|+||+++.+.+..+...++++++||||||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 9999999999999999999865 5667778888776665555544 899999999999999888888999999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
|++.+++|...+..++..++++.|+++||||+++.+.+++..++.+|+.|.+.
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999998764
No 26
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=280.00 Aligned_cols=204 Identities=33% Similarity=0.543 Sum_probs=178.4
Q ss_pred CCCCccCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCC
Q 016712 97 EGLDISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNP 174 (384)
Q Consensus 97 ~~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 174 (384)
+...|++++ +++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+...... ...+.
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~ 127 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGT 127 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCC
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCc
Confidence 445677777 99999999999999999999999999999999999999999999999999999988653211 12467
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHcc-CCCCCCccEEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRN-ALNLSEVQFVVL 251 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~l~~vVi 251 (384)
++||++||++|+.|+++.+++++. +..+..++|+.........+..+++|+|+||+++.+.+... ...++++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 899999999999999999999875 45677888988888888888888999999999999988765 467899999999
Q ss_pred eCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCe
Q 016712 252 DEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302 (384)
Q Consensus 252 DEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 302 (384)
||||++++++|+..+..+++.++.++|+++||||+|+.++++++.+++++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999987543
No 27
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.3e-36 Score=270.46 Aligned_cols=201 Identities=29% Similarity=0.512 Sum_probs=180.6
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
..|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...++++||
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~li 87 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLV 87 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEEE
Confidence 56999999999999999999999999999999999999999999999999999999999987632 123568999
Q ss_pred EecCHHHHHHHHHHHHHhCC---CCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++||++|+.|+++.++++.. ++.+.+++|+.........+.. .++|+|+||+++.+.+..+...+.++++||||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 99999999999999998864 5778888898887777666655 4799999999999999888888999999999999
Q ss_pred ccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEE
Q 016712 255 DQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVD 305 (384)
Q Consensus 255 h~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~ 305 (384)
|++.+ .+|...+..+++.+++++|++++|||+++.+.++++.++.+|+.|.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 4788899999999988999999999999999999999999999875
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-35 Score=278.79 Aligned_cols=257 Identities=28% Similarity=0.465 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
+++.+.++|.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++.. +.++||++|+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L 68 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTREL 68 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHH
Confidence 5789999999999999999999999999999999999999999999999998763 5679999999999
Q ss_pred HHHHHHHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 186 AKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 186 a~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
+.|+++.+++++. +..+..++|+.........+.. ++|+|+||++|.+.+......+.++++||+||+|++.++++.
T Consensus 69 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 69 TRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9999999999765 4677778888877766655554 899999999999999888778899999999999999999999
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH-------
Q 016712 264 EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL------- 336 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~------- 336 (384)
..+..++..++...+++++|||+++.+......++.++..+... ....++.+.+.............+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSKVQALRENKDKG 222 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHHHHHHHTCCCSS
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999988877532 223344444444432221111111
Q ss_pred ----HHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 ----FSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 ----~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+.++.++..|. .+..+||+|+.++|++++++|++|+++|+
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 270 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDML 270 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEE
Confidence 112244444444443 68899999999999999999999998874
No 29
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=269.04 Aligned_cols=208 Identities=27% Similarity=0.455 Sum_probs=173.7
Q ss_pred CCCCCCccCC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCC
Q 016712 95 KDEGLDISKL----DISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGR 170 (384)
Q Consensus 95 ~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 170 (384)
+.+..+|+++ ++++.++++|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ..
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-----~~ 95 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-----PA 95 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS-----CC
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh-----cc
Confidence 4455678776 89999999999999999999999999999999999999999999999999999988743 12
Q ss_pred CCCCEEEEEecCHHHHHHHHHHHHHhCCC--CceEEEECCCChHHHH-HHHhcCCCEEEECchhHHHHHHcc--CCCCCC
Q 016712 171 GRNPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQM-RALDYGVDAVVGTPGRVIDLIKRN--ALNLSE 245 (384)
Q Consensus 171 ~~~~~~lvl~Pt~~La~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~ 245 (384)
..++++||++||++|+.|+++.+++++.. +.+..++|+....... .....+++|+|+||+++.+++... ...+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 34678999999999999999999998763 4444444443221111 122346899999999999999876 467899
Q ss_pred ccEEEEeCcccccC---CChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEec
Q 016712 246 VQFVVLDEADQMLS---VGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLV 307 (384)
Q Consensus 246 l~~vViDEah~~~~---~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 307 (384)
+++|||||||++.+ .+|...+..++..+. .+.|+++||||+|+.+.+++..++++|+.|.+.
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999987 468889998888764 578999999999999999999999999999874
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-35 Score=296.51 Aligned_cols=275 Identities=23% Similarity=0.312 Sum_probs=195.8
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
...|...++++.+++.+.+.||..|+++|.++++.++++ +++++++|||+|||++|++|++..+.. ...+++
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------~~~~~~ 191 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------SVPKPQ 191 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------TCCSCC
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------CCCCce
Confidence 345677788999999999999999999999999999998 999999999999999999999988743 123568
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCCCce--EEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeC
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPSLDT--ICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDE 253 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDE 253 (384)
+|||+|+++|+.|+++.+++++....+ ....++.... ....+++|+|+||+++.+.+......+.++++|||||
T Consensus 192 vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 192 AICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred EEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 999999999999999999998764443 3333332211 1233689999999999999988888899999999999
Q ss_pred cccccC-CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhH
Q 016712 254 ADQMLS-VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKV 332 (384)
Q Consensus 254 ah~~~~-~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (384)
+|++.+ .++...+..++..++++.|++++|||+++.+..+...++.++..+.+... ......+.+.+........+.
T Consensus 268 aH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 268 ADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp HHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHH
T ss_pred hhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHH
Confidence 999987 57899999999999999999999999999999999999999988766432 233344455555554445555
Q ss_pred HHHHHH--------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 333 ENALFS--------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 333 ~~l~~~--------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+... ..+.++.++..|...+..+..+||+|+.++|++++++|++|+++|+
T Consensus 346 ~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VL 411 (508)
T 3fho_A 346 NVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 411 (508)
T ss_dssp HHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCC
T ss_pred HHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 444332 2366778888898899999999999999999999999999999885
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.5e-34 Score=291.07 Aligned_cols=269 Identities=14% Similarity=0.170 Sum_probs=206.4
Q ss_pred CCccCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 99 LDISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+.+.++++++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++++|
T Consensus 21 w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~l 88 (591)
T 2v1x_A 21 WNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTL 88 (591)
T ss_dssp GCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEE
T ss_pred cccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEE
Confidence 455678899999999999 69999999999999999999999999999999999999999742 46899
Q ss_pred EEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH------hcCCCEEEECchhHHH---HHH--ccCCCCCCc
Q 016712 178 VLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL------DYGVDAVVGTPGRVID---LIK--RNALNLSEV 246 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~IlV~Tp~~l~~---~l~--~~~~~~~~l 246 (384)
||+|+++|+.|+.+.+.++ ++.+..++|+....+....+ ..+.+|+|+||++|.. ++. .....+.++
T Consensus 89 VisP~~~L~~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i 166 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRF 166 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCE
T ss_pred EEeCHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCC
Confidence 9999999999999999998 47788888887765543322 3468999999998742 221 123456789
Q ss_pred cEEEEeCcccccCCC--hHHHHHH--HHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEE
Q 016712 247 QFVVLDEADQMLSVG--FAEDVEV--ILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYS 322 (384)
Q Consensus 247 ~~vViDEah~~~~~~--~~~~~~~--il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~ 322 (384)
++|||||||++.+|| |.+.+.. ++....++.|+++||||+++.+...+..++..+..+.+... ....++....
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v 243 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEV 243 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEE
Confidence 999999999999988 7766654 34444567999999999999998888887765433333211 1122333222
Q ss_pred EEecc-chhhHHHHHHH---------------HhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 323 IATSM-NMQKVENALFS---------------LKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 323 ~~~~~-~~~k~~~l~~~---------------~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..... ...+...++.. .++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~Vl 321 (591)
T 2v1x_A 244 RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVV 321 (591)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEE
T ss_pred EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 22211 12233333322 2377889999999999999999999999999999999999998874
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.7e-33 Score=281.77 Aligned_cols=262 Identities=18% Similarity=0.233 Sum_probs=200.6
Q ss_pred CccCCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
+|+++++++.+.+.|.+ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+||
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lv 70 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVV 70 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEE
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEE
Confidence 68899999999999999 79999999999999999999999999999999999999998742 457999
Q ss_pred EecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HH-hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---AL-DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
|+|+++|+.|+.+.+++++ +.+..++++....+... .+ ...++|+|+||++|........+...++++||||||
T Consensus 71 i~P~~aL~~q~~~~l~~~g--i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQANG--VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp ECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSG
T ss_pred ECChHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCc
Confidence 9999999999999999874 67777777766544332 22 335899999999985332222334578999999999
Q ss_pred ccccCCC--hHHHHHH---HHHHCCCCCcEEEEEccCChhHHHHHHHhc--CCCeEEEecCCCcccccCCeEEEEEEecc
Q 016712 255 DQMLSVG--FAEDVEV---ILERLPQNRQSMMFSATMPPWIRSLTNKYL--KNPLTVDLVGDSDQKLADGISLYSIATSM 327 (384)
Q Consensus 255 h~~~~~~--~~~~~~~---il~~l~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 327 (384)
|++.++| |...+.. +...+ ++.+++++|||+++.+.......+ .++..+. .+. ...++.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~----~r~~l~~~v~~~-- 220 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF----DRPNIRYMLMEK-- 220 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCC----CCTTEEEEEEEC--
T ss_pred cccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCC----CCCceEEEEEeC--
Confidence 9999887 6555544 34445 469999999999998766554443 4555443 211 122333222221
Q ss_pred chhhHHHHHH--------------HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 328 NMQKVENALF--------------SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 328 ~~~k~~~l~~--------------~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
..+...++. +.++.++.++..|...|+.+..|||+|++++|++++++|++|+++|+
T Consensus 221 -~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 221 -FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp -SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 223333322 23377889999999999999999999999999999999999998874
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.3e-33 Score=301.78 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=234.0
Q ss_pred CCCCcccccc-CCCCcccccc--cCCCcCccccHHHHhhhhccccccc---------cCCCCCCCCCCccCCCCCHHHHH
Q 016712 45 PRHDDIIKSR-FSAGTREFHA--ISRPLDFKSSIAWQHAQSAVDDYVA---------YDDSSKDEGLDISKLDISQDIVA 112 (384)
Q Consensus 45 p~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~l~l~~~l~~ 112 (384)
.+|.+++|.+ +...++|.++ ..++++.+++..|+..+.++..... |..+....+.. ++.++.+.+
T Consensus 518 ~~~~l~vp~~~l~~~~~y~g~~~~~~~l~~l~~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~g~~---~~~~~~~~~ 594 (1151)
T 2eyq_A 518 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA---FKHDREQYQ 594 (1151)
T ss_dssp GGCEEEEEGGGGGGEEECCCSCSSSCCCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---CCCCHHHHH
T ss_pred CCCceeeeHHHhhhHhcccCCCCCCCchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC---CCCCHHHHH
Confidence 4577888888 8899999766 3568899999999987665543221 22222334443 446888888
Q ss_pred HHHHc-CCCCCcHHHHHHHHHHhC----CC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 113 ALARR-GISKLFPIQKAVLEPAMQ----GR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 113 ~l~~~-g~~~~~~~Q~~~i~~i~~----g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+.+. +| ++||+|.++++.++. |+ |+++++|||+|||++|+++++..+. .+++++|++||++|
T Consensus 595 ~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~vlvlvPt~~L 664 (1151)
T 2eyq_A 595 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQVAVLVPTTLL 664 (1151)
T ss_dssp HHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEEEEECSSHHH
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeEEEEechHHH
Confidence 88764 66 589999999999886 55 9999999999999999999988762 47799999999999
Q ss_pred HHHHHHHHHHhCCC--CceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 186 AKQVEKEFHESAPS--LDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 186 a~q~~~~~~~~~~~--~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+.|+++.+.+.+.+ +++..+.+.....+.. ..+.. .++|+|+||+.+ ...+.++++++|||||+|+
T Consensus 665 a~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIiDEaH~--- 736 (1151)
T 2eyq_A 665 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHR--- 736 (1151)
T ss_dssp HHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGG---
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEEEechHh---
Confidence 99999999988764 4566666665544432 33444 499999999755 2456789999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHH---
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENAL--- 336 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~--- 336 (384)
|+.....+++.++.++++++||||+++++..+...++.++..+...+.. ...+..+...... ..-.+.++
T Consensus 737 --~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~----r~~i~~~~~~~~~-~~i~~~il~~l 809 (1151)
T 2eyq_A 737 --FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR----RLAVKTFVREYDS-MVVREAILREI 809 (1151)
T ss_dssp --SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB----CBCEEEEEEECCH-HHHHHHHHHHH
T ss_pred --cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC----ccccEEEEecCCH-HHHHHHHHHHH
Confidence 4556677788888889999999999999998888888777666543322 1223334333221 11112221
Q ss_pred ---------HHHhHhHHHHHHHHHhh--cceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 337 ---------FSLKQNVMQTAWLMLWL--KVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 337 ---------~~~~~~~~~~~~~l~~~--~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++..+.++.++..|... +.++..+||+|++++|++++++|++|+++|+
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VL 868 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 868 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 22336778888888877 8899999999999999999999999999885
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.9e-33 Score=273.08 Aligned_cols=252 Identities=18% Similarity=0.180 Sum_probs=192.5
Q ss_pred HHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 108 QDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 108 ~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
+.+.+.+.+. || +|+|+|.++++.+++|+|+++++|||+|||++|++|++..+ ..++++|||+||++|+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---------~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---------TTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---------cCCCEEEEEECCHHHH
Confidence 3566667764 66 79999999999999999999999999999999999988765 3478899999999999
Q ss_pred HHHHHHHHHhCC-CCceEEEECCCCh---HHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC--
Q 016712 187 KQVEKEFHESAP-SLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS-- 259 (384)
Q Consensus 187 ~q~~~~~~~~~~-~~~~~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~-- 259 (384)
.|+++.+++++. ++.+..++|+... ..+...+..+ ++|+|+||+++.+.+.. +.+.++++|||||||++.+
T Consensus 78 ~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~ 155 (414)
T 3oiy_A 78 KQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKAS 155 (414)
T ss_dssp HHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCH
T ss_pred HHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhcc
Confidence 999999999876 6788889999887 5555666666 99999999999888764 5677999999999987654
Q ss_pred ---------CChHHH-HHHHHHHCC-----------CCCcEEEEEcc-CChhHH-HHHHHhcCCCeEEEecCCCcccccC
Q 016712 260 ---------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIR-SLTNKYLKNPLTVDLVGDSDQKLAD 316 (384)
Q Consensus 260 ---------~~~~~~-~~~il~~l~-----------~~~q~l~~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~ 316 (384)
.+|... +..++..++ .+.|++++||| +|..+. .+...++. +.+ ........
T Consensus 156 ~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~ 229 (414)
T 3oiy_A 156 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTV--GRLVSVAR 229 (414)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCS--SCCCCCCC
T ss_pred chhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCc--Cccccccc
Confidence 567777 788888776 78999999999 565544 33333332 111 12223445
Q ss_pred CeEEEEEEeccchhhHHHHHH----------HHhHhHHHHHHHHHhhcceEE-EecCCCChhhhhchhhhhhcCCcccC
Q 016712 317 GISLYSIATSMNMQKVENALF----------SLKQNVMQTAWLMLWLKVIIV-SLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 317 ~i~~~~~~~~~~~~k~~~l~~----------~~~~~~~~~~~~l~~~~~~v~-~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
++.+.+..... ..+...++. +..+.++.++..|...|+.+. .+||+ +|+ +++|++|+++|+
T Consensus 230 ~i~~~~~~~~~-~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 230 NITHVRISSRS-KEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp SEEEEEESSCC-HHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred cchheeeccCH-HHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 56666655432 222222222 233778889999999999998 99995 444 999999999874
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=299.87 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=164.0
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVL 179 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl 179 (384)
.|..+++++.+...+...++..|+|+|.++|+.+..|+++++++|||||||++|++|++..+. .+.+++|+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---------~g~rvlvl 233 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYT 233 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------TTCEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEE
Confidence 466677777777777777777899999999999999999999999999999999999998873 37789999
Q ss_pred ecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 180 APTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 180 ~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+||++|+.|+++.+.+.+. .+.+++|+.... .+++|+|+||++|.+++..+...+.++++|||||||++.+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~--~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG--DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS--SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cCcHHHHHHHHHHHHHHhC--CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 9999999999999999885 667778876533 3589999999999999988877788999999999999999
Q ss_pred CChHHHHHHHHHHCCCCCcEEEEEccCChh--HHHHHHHhcCCCeEEEe
Q 016712 260 VGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDL 306 (384)
Q Consensus 260 ~~~~~~~~~il~~l~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~ 306 (384)
++|+..+..++..+++++|+|+||||+|+. +..++..+...+..+..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~ 353 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 999999999999999999999999999875 34666666666666544
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.3e-32 Score=288.35 Aligned_cols=184 Identities=22% Similarity=0.341 Sum_probs=160.1
Q ss_pred CccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.|+++++++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||++|.+|+++.+.. .+.+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEEE
Confidence 589999999999999999999999999999998 8899999999999999999999999988763 2678999
Q ss_pred EecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc
Q 016712 179 LAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM 257 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~ 257 (384)
++|+++|+.|+++.++.+.+ ++.+..++|+...... ...+++|+|+||+++..++......++++++|||||+|++
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999999975543 6788888887654432 1235899999999999988877767889999999999999
Q ss_pred cCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHH
Q 016712 258 LSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 258 ~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.+++++..+..++..++.+.|+|+||||+++. ..+..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~ 187 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE 187 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH
Confidence 99889999999999987789999999999863 44444
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-31 Score=281.10 Aligned_cols=187 Identities=22% Similarity=0.335 Sum_probs=159.9
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCE
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPL 175 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 175 (384)
+...|+++++++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||++|.++++..+.. .+.+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~ 77 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGK 77 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCe
Confidence 346799999999999999999999999999999999 7889999999999999999999999988753 2678
Q ss_pred EEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCc
Q 016712 176 CLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEa 254 (384)
++|++|+++|+.|+++.++.+.. ++.+...+|+...... .+ .+++|+|+||+++..++......++++++|||||+
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 154 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL 154 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSG
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEech
Confidence 99999999999999999965443 5777778887654432 12 35899999999999988887666889999999999
Q ss_pred ccccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHH
Q 016712 255 DQMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNK 296 (384)
Q Consensus 255 h~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~ 296 (384)
|++.+.+++..++.++.+++ +.|+|+||||+++. ..+...
T Consensus 155 H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~ 194 (715)
T 2va8_A 155 HYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKW 194 (715)
T ss_dssp GGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHH
T ss_pred hhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHH
Confidence 99998889999999988886 89999999999863 444443
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-32 Score=286.52 Aligned_cols=269 Identities=20% Similarity=0.207 Sum_probs=194.5
Q ss_pred CccCCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEE
Q 016712 100 DISKLD--ISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCL 177 (384)
Q Consensus 100 ~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 177 (384)
+|++++ +++.+.+.+.+.||..|+|+|.++++.+..++++++++|||||||++|.+|++..+.. +++++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l 72 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSL 72 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEE
Confidence 578888 9999999999999999999999999999999999999999999999999999988743 56899
Q ss_pred EEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 178 VLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 178 vl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
|++|+++|+.|+++.++.+.. ++++...+|+...... ...+++|+|+||+++..++......++++++|||||+|+
T Consensus 73 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 73 YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 999999999999999965543 5778888887654332 123689999999999999888766688999999999999
Q ss_pred ccCCChHHHHHHHHHHC---CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccC----CeEEEEEEec---
Q 016712 257 MLSVGFAEDVEVILERL---PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD----GISLYSIATS--- 326 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l---~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~----~i~~~~~~~~--- 326 (384)
+.+++++..+..++..+ .++.|+|+||||+++ ...+.. ++..+. +.... ...+... .....+....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDW-RPVPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCC-CSSCEEEEEECSSEEEEEETTEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCC-CCccceEEEeeCCeeeccCcchhh
Confidence 99988998888887766 578999999999986 344544 443221 21110 0000000 0000111100
Q ss_pred -cchhhHHHHHH------------HHhHhHHHHHHHHHhh------------------------------cceEEEecCC
Q 016712 327 -MNMQKVENALF------------SLKQNVMQTAWLMLWL------------------------------KVIIVSLCMG 363 (384)
Q Consensus 327 -~~~~k~~~l~~------------~~~~~~~~~~~~l~~~------------------------------~~~v~~~hg~ 363 (384)
........+.. ..++.++.++..+... +..+.++||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 00002222211 1224555555554432 2458899999
Q ss_pred CChhhhhchhhhhhcCCcccC
Q 016712 364 ISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 364 m~~~eR~~il~~F~~~~~~V~ 384 (384)
|+.++|+.+++.|++|+++|+
T Consensus 306 l~~~~R~~v~~~f~~g~~~vl 326 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVV 326 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEE
T ss_pred CCHHHHHHHHHHHHCCCCeEE
Confidence 999999999999999999874
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=272.33 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=145.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+|. |+|+|.++++.+..|+++++++|||+|||++|.++++..+. .+.++||++||++|++|+++.+.+.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---------~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------cCCeEEEECChHHHHHHHHHHHHHH
Confidence 4664 99999999999999999999999999999999999988773 3678999999999999999999998
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+. .+..++|+..... +++|+|+||++|.+++.++...+.++++|||||+|++.+++++..++.++..++.+
T Consensus 153 ~~--~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 153 FG--DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp HS--CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred hC--CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 75 6677788765432 47999999999999998887888999999999999999999999999999999999
Q ss_pred CcEEEEEccCChhHH--HHHHHhcCCCeEEE
Q 016712 277 RQSMMFSATMPPWIR--SLTNKYLKNPLTVD 305 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~--~~~~~~l~~~~~i~ 305 (384)
+|+|+||||+|+... .++......+..+.
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi 254 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIV 254 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEE
Confidence 999999999987532 33333445555544
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=3.5e-30 Score=278.75 Aligned_cols=251 Identities=18% Similarity=0.165 Sum_probs=192.7
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHH
Q 016712 109 DIVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAK 187 (384)
Q Consensus 109 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~ 187 (384)
.+.+.+.+ .|| +|||+|.++++.+++|+|+++++|||+|||++|+++++..+ ..++++|||+||++||.
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---------~~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---------RKGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---------hcCCeEEEEechHHHHH
Confidence 34444544 588 59999999999999999999999999999999888888776 34788999999999999
Q ss_pred HHHHHHHHhC-CCCceEEEECCCCh---HHHHHHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC---
Q 016712 188 QVEKEFHESA-PSLDTICVYGGTPI---SHQMRALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS--- 259 (384)
Q Consensus 188 q~~~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~--- 259 (384)
|+++.+++++ .++.+..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.++++++|||||||++..
T Consensus 136 Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 136 QTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp HHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSH
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccc
Confidence 9999999965 35688889999887 5566677766 99999999999888764 5578999999999976654
Q ss_pred --------CChHHH-HHHHHHHCC-----------CCCcEEEEEcc-CChhHHH-HHHHhcCCCeEEEecCCCcccccCC
Q 016712 260 --------VGFAED-VEVILERLP-----------QNRQSMMFSAT-MPPWIRS-LTNKYLKNPLTVDLVGDSDQKLADG 317 (384)
Q Consensus 260 --------~~~~~~-~~~il~~l~-----------~~~q~l~~SAT-~~~~~~~-~~~~~l~~~~~i~~~~~~~~~~~~~ 317 (384)
+||..+ +..+++.++ .+.|+++|||| .|..+.. +...++. +.+. .......+
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~ 287 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARN 287 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCC
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCC
Confidence 777777 888888877 78999999999 5655442 3333332 2221 22244566
Q ss_pred eEEEEEEeccchhhHHHHHH----------HHhHhHHHHHHHHHhhcceEE-EecCCCChhhhhchhhhhhcCCcccC
Q 016712 318 ISLYSIATSMNMQKVENALF----------SLKQNVMQTAWLMLWLKVIIV-SLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~----------~~~~~~~~~~~~l~~~~~~v~-~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.+.++.+.. ..+...++. +..+.++.++..|...|+.+. .+||+ |++ +++|++|+++|+
T Consensus 288 i~~~~~~~~k-~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VL 358 (1104)
T 4ddu_A 288 ITHVRISSRS-KEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINIL 358 (1104)
T ss_dssp EEEEEESCCC-HHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEE
T ss_pred ceeEEEecCH-HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEE
Confidence 7777665532 222222221 223788899999999999998 99992 555 999999999885
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=9.8e-30 Score=273.04 Aligned_cols=157 Identities=22% Similarity=0.246 Sum_probs=140.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.+| .|+++|.++|+.+++|+|+++++|||+|||++|++++...+. .+.++||++|+++|+.|+++.+++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 355 599999999999999999999999999999999999887652 3678999999999999999999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+.++.+..++|+.... ..++|+|+||++|.+.+......+.++++|||||+|++.+++|+..+..++..++++
T Consensus 106 ~~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 106 FDDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp C--CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred cCCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 8888888898887543 247999999999999998887778999999999999999999999999999999999
Q ss_pred CcEEEEEccCChhH
Q 016712 277 RQSMMFSATMPPWI 290 (384)
Q Consensus 277 ~q~l~~SAT~~~~~ 290 (384)
+|+|++|||+++..
T Consensus 179 v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 179 VKFILLSATVPNTY 192 (997)
T ss_dssp CEEEEEECCCTTHH
T ss_pred CCEEEEcCCCCChH
Confidence 99999999998654
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=3.5e-30 Score=268.90 Aligned_cols=173 Identities=19% Similarity=0.196 Sum_probs=139.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHH
Q 016712 111 VAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVE 190 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~ 190 (384)
..+|..+||.+|+++|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHH
Confidence 3457778999999999999999999999999999999999999999998875421 122468999999999999999
Q ss_pred HHHHHhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCC-hHHHH
Q 016712 191 KEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVG-FAEDV 266 (384)
Q Consensus 191 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~-~~~~~ 266 (384)
+.++++++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.. +...+
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999986 6788888998876666666666799999999999999988776 78899999999999998765 22223
Q ss_pred HHHHHH-----CCCCCcEEEEEccCC
Q 016712 267 EVILER-----LPQNRQSMMFSATMP 287 (384)
Q Consensus 267 ~~il~~-----l~~~~q~l~~SAT~~ 287 (384)
...+.. .++..++++||||+.
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccc
Confidence 223332 246789999999997
No 43
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=9.5e-30 Score=258.16 Aligned_cols=168 Identities=19% Similarity=0.207 Sum_probs=132.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
++..+|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+++.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3455799999999999999999999999999999999999998875421 122678999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCChHHHH-HHHHHH
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILER 272 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~~~~~-~~il~~ 272 (384)
++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+++....+ ..++..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 75 6788888898876666666667799999999999999988877 7899999999999999988754333 222222
Q ss_pred -C---CCCCcEEEEEccCCh
Q 016712 273 -L---PQNRQSMMFSATMPP 288 (384)
Q Consensus 273 -l---~~~~q~l~~SAT~~~ 288 (384)
+ .+..|+++||||++.
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp HHCC---CCEEEEEESCCCC
T ss_pred hhcccCCCCeEEEEeCCccc
Confidence 2 356899999999953
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.4e-29 Score=264.45 Aligned_cols=253 Identities=17% Similarity=0.134 Sum_probs=173.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 108 QDIVAALARRGISKLFPIQKAVLEPAMQG------RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
+.+.+.+...+| .||++|.++++.++.+ +|+++++|||||||++|++|++..+.. +.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 344445567899 7999999999998876 699999999999999999999998743 678999999
Q ss_pred CHHHHHHHHHHHHHhCC--CCceEEEECCCChHHHH---HHHhcC-CCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 182 TRELAKQVEKEFHESAP--SLDTICVYGGTPISHQM---RALDYG-VDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 182 t~~La~q~~~~~~~~~~--~~~~~~~~g~~~~~~~~---~~~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
|++|+.|+++.+.+++. ++++..++|+....+.. ..+..+ ++|+||||+.+.+ .+.+.++++|||||+|
T Consensus 426 tr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 99999999999999875 57788888988766543 334444 9999999987743 5678999999999999
Q ss_pred cccCCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 256 QMLSVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
++.. .....+.....++++++||||++++...+......+...+...+... ..+..+.........-.+.+
T Consensus 501 r~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r----~~i~~~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 501 RFGV-----KQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGR----KEVQTMLVPMDRVNEVYEFV 571 (780)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSC----CCCEECCCCSSTHHHHHHHH
T ss_pred hhhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCC----cceEEEEeccchHHHHHHHH
Confidence 9532 22222233345789999999998877665542222233332111111 11221111111000001111
Q ss_pred HHH--------------------HhHhHHHHHHHHHh---hcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFS--------------------LKQNVMQTAWLMLW---LKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~--------------------~~~~~~~~~~~l~~---~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
... ....++.++..+.. .+..+..+||+|++++|++++++|++|+++|+
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~IL 643 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 100 01235566666666 37899999999999999999999999999985
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=1.4e-28 Score=249.26 Aligned_cols=164 Identities=20% Similarity=0.184 Sum_probs=136.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
+|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+++.++++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999999999998886521 12367899999999999999999999865
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCCh-HHHHHHHHHHC---
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVEVILERL--- 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~-~~~~~~il~~l--- 273 (384)
++.+..++|+.........+..+++|+|+||++|.+.+..+.. .+.++++|||||||++.+.+. ...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 6788889999877666666666799999999999999988777 788999999999999988753 33333333332
Q ss_pred --CCCCcEEEEEccCCh
Q 016712 274 --PQNRQSMMFSATMPP 288 (384)
Q Consensus 274 --~~~~q~l~~SAT~~~ 288 (384)
.+..|+++||||++.
T Consensus 160 ~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CCSCCCEEEEEESCCCC
T ss_pred ccCCCCeEEEEecCccc
Confidence 246899999999965
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=1.4e-28 Score=260.42 Aligned_cols=168 Identities=19% Similarity=0.198 Sum_probs=133.9
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
-+|+..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...++++|||+||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999998886521 12367899999999999999999999
Q ss_pred hCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCChHHHH-HHHHH
Q 016712 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGFAEDV-EVILE 271 (384)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~~~~~-~~il~ 271 (384)
+++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+....+ ..++.
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred hcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 876 7888899999877766677777899999999999999988777 7889999999999999887643332 23333
Q ss_pred HC----CCCCcEEEEEccCC
Q 016712 272 RL----PQNRQSMMFSATMP 287 (384)
Q Consensus 272 ~l----~~~~q~l~~SAT~~ 287 (384)
.. .+..|+++||||++
T Consensus 399 ~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCC
T ss_pred HhhccCCCCCeEEEEcCCcc
Confidence 21 45689999999985
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.5e-29 Score=273.62 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=187.3
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH
Q 016712 110 IVAALAR-RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ 188 (384)
Q Consensus 110 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q 188 (384)
+.+.+.+ +||. | ++|.++|+.++.|+|+++++|||||||+ |.+|++..+.. .++++|||+||++|+.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 3444554 7998 9 9999999999999999999999999998 88999887753 46789999999999999
Q ss_pred HHHHHHHhCC--CC----ceEEEECCCChHHH---HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccC
Q 016712 189 VEKEFHESAP--SL----DTICVYGGTPISHQ---MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 189 ~~~~~~~~~~--~~----~~~~~~g~~~~~~~---~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+++.+++++. ++ .+.+++|+.....+ ...+.. ++|+|+||++|.+++.. ++++++|||||||+|++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 9999999875 34 67788888877653 344455 99999999999987654 67999999999999998
Q ss_pred CChHHHHHHHHHHC-----------CCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccc
Q 016712 260 VGFAEDVEVILERL-----------PQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMN 328 (384)
Q Consensus 260 ~~~~~~~~~il~~l-----------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 328 (384)
++..+..++..+ +...|++++|||+++. ..+...++.++..+.+. .......++.++++....
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~~~~k- 263 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAVNDES- 263 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEESCCC-
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEechhH-
Confidence 567888888877 3578999999999987 54444444444444332 122334455555552211
Q ss_pred hhhHHHH----------HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 329 MQKVENA----------LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 329 ~~k~~~l----------~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
......+ +++..+.++.++..|... +.+..+||+| ++++++|++|+++|+
T Consensus 264 ~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VL 323 (1054)
T 1gku_B 264 ISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHL 323 (1054)
T ss_dssp TTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEE
T ss_pred HHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEE
Confidence 1111111 223447788888888877 9999999998 588999999999874
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=5.4e-28 Score=270.38 Aligned_cols=180 Identities=20% Similarity=0.290 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 106 ISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
+..+..+++...+|..++|+|.++++.++. ++|+++++|||||||++|.+|+++.+.. ..+.++||++|+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~ra 983 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEA 983 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHH
Confidence 445677777778899999999999999975 5689999999999999999999999875 34668999999999
Q ss_pred HHHHHHHHHHHhC-C--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC--CCCCccEEEEeCcccccC
Q 016712 185 LAKQVEKEFHESA-P--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL--NLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 185 La~q~~~~~~~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~--~~~~l~~vViDEah~~~~ 259 (384)
||+|+++.+++.+ + ++.+..++|+..... + ...+++|+|+|||++..++.++.. .++++++||+||+|.+.+
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--K-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--H-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCCcch--h-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 9999999998753 3 456777777644322 2 223479999999999777765432 367899999999998877
Q ss_pred CChHHHHHHHHHH-------CCCCCcEEEEEccCChhHHHHHHHh
Q 016712 260 VGFAEDVEVILER-------LPQNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 260 ~~~~~~~~~il~~-------l~~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
. ++..++.++.+ +++++|+|+||||+++. .+++.+.
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL 1103 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWL 1103 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHh
Confidence 5 67766666554 46789999999999864 5555544
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=7.5e-27 Score=231.55 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC--C
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA--P 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~--~ 198 (384)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.+++ +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 5999999999999998 99999999999999999999887642 36679999999999999999999987 3
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
...+..++|+......... ..+++|+|+||+.+...+..+.+.+.++++|||||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 4478888888766544333 335899999999999999888888899999999999999876655555566666667899
Q ss_pred EEEEEccCChh
Q 016712 279 SMMFSATMPPW 289 (384)
Q Consensus 279 ~l~~SAT~~~~ 289 (384)
+++||||++..
T Consensus 159 ~l~lTaTp~~~ 169 (494)
T 1wp9_A 159 VIGLTASPGST 169 (494)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEecCCCCC
Confidence 99999999854
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=4.1e-28 Score=244.36 Aligned_cols=248 Identities=13% Similarity=0.030 Sum_probs=174.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh--
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES-- 196 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~-- 196 (384)
...|+|+|.++++.++.++++++++|||+|||++|++++...+.. .++++|||+||++|+.|+++.++++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 347999999999999999999999999999999999998887743 2348999999999999999999988
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
+++..+..++|+.....+ +..+.+|+|+||+.+.. .....++++++|||||+|++.. ..+..+++.+++.
T Consensus 183 ~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 444577778887665543 44568999999997643 2334577899999999999765 4567778888888
Q ss_pred CcEEEEEccCChhHHH-HHHHhcCCCeEEEecCCCc--ccccCCeEEEEEEecc------------c----------hhh
Q 016712 277 RQSMMFSATMPPWIRS-LTNKYLKNPLTVDLVGDSD--QKLADGISLYSIATSM------------N----------MQK 331 (384)
Q Consensus 277 ~q~l~~SAT~~~~~~~-~~~~~l~~~~~i~~~~~~~--~~~~~~i~~~~~~~~~------------~----------~~k 331 (384)
.++++||||+++.... +....+.++..+.+..... ...........+.... . ..+
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 9999999999776433 2222233444443322100 0001111111111100 0 011
Q ss_pred HHHHHHHH----------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSL----------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~----------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...+...+ .+.+..++..|...+.++..+||+|+.++|++++++|++|+++|+
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vL 401 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIII 401 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEE
Confidence 11111111 144556777777777899999999999999999999999999874
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=257.02 Aligned_cols=165 Identities=21% Similarity=0.243 Sum_probs=129.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHH-HHHHHHhCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQV-EKEFHESAPS 199 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~-~~~~~~~~~~ 199 (384)
.|+|+|.++++.++.|+|+++++|||+|||++|++|++..+...... ..+.++|||+|+++|+.|+ .+.++++++.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH---TCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc---CCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 69999999999999999999999999999999999999888653221 2346799999999999999 9999998865
Q ss_pred -CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHH------HccCCCCCCccEEEEeCcccccCCC-hHHHHHHHHH
Q 016712 200 -LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLI------KRNALNLSEVQFVVLDEADQMLSVG-FAEDVEVILE 271 (384)
Q Consensus 200 -~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l------~~~~~~~~~l~~vViDEah~~~~~~-~~~~~~~il~ 271 (384)
+.+..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...+ +...+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 8888999988776666666678999999999999888 4455678899999999999986543 2222222222
Q ss_pred H----C---------CCCCcEEEEEccCCh
Q 016712 272 R----L---------PQNRQSMMFSATMPP 288 (384)
Q Consensus 272 ~----l---------~~~~q~l~~SAT~~~ 288 (384)
. . .+..++++||||++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhhcccccccccccCCCCCEEEEecccccc
Confidence 1 1 156899999999986
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.95 E-value=8e-28 Score=257.87 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=131.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+... ....++++|||+||++|+.|+++.++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~----~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM----PAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC----CSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc----cccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999998876431 1122678999999999999999999998
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCC-CCCCccEEEEeCcccccCCCh-HHHHHHHHHH
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNAL-NLSEVQFVVLDEADQMLSVGF-AEDVEVILER 272 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~l~~vViDEah~~~~~~~-~~~~~~il~~ 272 (384)
++ ++.+..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++...+. ...+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 75 6888889998876665556666799999999999999988776 788999999999999988753 3333333332
Q ss_pred C----CCCCcEEEEEccCC
Q 016712 273 L----PQNRQSMMFSATMP 287 (384)
Q Consensus 273 l----~~~~q~l~~SAT~~ 287 (384)
. .+..|+++||||++
T Consensus 400 ~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHTTCSCCCEEEEEESCCC
T ss_pred hhccCCCcCeEEEecCCcc
Confidence 1 45689999999985
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=2.1e-27 Score=265.71 Aligned_cols=173 Identities=19% Similarity=0.256 Sum_probs=136.5
Q ss_pred CCCCCcHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcc--CCCCCCEEEEEecCHHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAM-QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKH--GRGRNPLCLVLAPTRELAKQVEKEFH 194 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~--~~~~~~~~lvl~Pt~~La~q~~~~~~ 194 (384)
||++++++|.++++.++ .++|++++||||||||++|.+|+++.+....... ....+.++|||+|+++||+|+++.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999877 5789999999999999999999999997643221 12357799999999999999999998
Q ss_pred HhCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC--CCCCCccEEEEeCcccccCCChHHHHHHHH
Q 016712 195 ESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFAEDVEVIL 270 (384)
Q Consensus 195 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~l~~vViDEah~~~~~~~~~~~~~il 270 (384)
+.+. ++.+..++|+...... ...+++|+|+|||++..++.... ..++++++|||||+|.+.+ .+|..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8664 5667778888765432 12358999999999865554432 2368899999999997766 4888777766
Q ss_pred HH-------CCCCCcEEEEEccCChhHHHHHH
Q 016712 271 ER-------LPQNRQSMMFSATMPPWIRSLTN 295 (384)
Q Consensus 271 ~~-------l~~~~q~l~~SAT~~~~~~~~~~ 295 (384)
.+ +++++|+|++|||+|+. .+++.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~ 262 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVAT 262 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHH
Confidence 54 46789999999999863 44544
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=3.6e-26 Score=235.61 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=134.3
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 116 RRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.+|| .|||+|..+++.++.|+ |..++||+|||++|.+|++...+ .+++++||+||++||.|..+.+..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHH
Confidence 4699 89999999999999998 99999999999999999985432 366899999999999999999888
Q ss_pred hCC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc-CCC----
Q 016712 196 SAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SVG---- 261 (384)
Q Consensus 196 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~-~~~---- 261 (384)
++. ++.+.+++||.+... +....++||+||||++| .+++..+ ...++.+.++||||||.|+ +.+
T Consensus 147 l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 147 IFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 653 688889999987543 34445799999999999 6766543 3567899999999999998 653
Q ss_pred -----------hHHHHHHHHHHCC---------CCCcEE-----------------EEEccCChh
Q 016712 262 -----------FAEDVEVILERLP---------QNRQSM-----------------MFSATMPPW 289 (384)
Q Consensus 262 -----------~~~~~~~il~~l~---------~~~q~l-----------------~~SAT~~~~ 289 (384)
|...+..++..++ +.+|++ +||||.+..
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~ 289 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVAL 289 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHH
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchh
Confidence 7889999999997 468887 899998753
No 55
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=3.9e-26 Score=234.81 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=110.6
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|+|+|..+++.++.|+ |..++||+|||++|.+|++.... .+++++||+||++||.|+++.+..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 475 79999999999999998 99999999999999999986542 3678999999999999999998887
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCCCccEEEEeCccccc-CC------
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML-SV------ 260 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~-~~------ 260 (384)
+. ++.+.+++||.+.. .+.+..++||+||||++| .+++..+. ..+++++++||||+|+|+ +.
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 54 67888899998754 344555799999999999 78887553 567899999999999998 54
Q ss_pred ---------ChHHHHHHHHHHCCC
Q 016712 261 ---------GFAEDVEVILERLPQ 275 (384)
Q Consensus 261 ---------~~~~~~~~il~~l~~ 275 (384)
+|...+..++..+++
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEEC--------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchh
Confidence 367788888888864
No 56
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.93 E-value=5.3e-25 Score=226.76 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=135.7
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+ .||++|..+++.++.|+ |..++||+|||++|.+|++...+ .+.+++||+||++||.|..+.+..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 598 89999999999999998 99999999999999999975543 3567999999999999999998886
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHcc------CCCCCCccEEEEeCccccc-CC------
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRN------ALNLSEVQFVVLDEADQML-SV------ 260 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~l~~vViDEah~~~-~~------ 260 (384)
+. ++.+.+++||.+... +....++||+||||++| .+++..+ ...++.+.++||||+|.|+ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 54 688888999877543 34445699999999999 7887654 3567899999999999998 42
Q ss_pred ---------ChHHHHHHHHHHCC---------CCCcEE-----------------EEEccCChhHH
Q 016712 261 ---------GFAEDVEVILERLP---------QNRQSM-----------------MFSATMPPWIR 291 (384)
Q Consensus 261 ---------~~~~~~~~il~~l~---------~~~q~l-----------------~~SAT~~~~~~ 291 (384)
+|...+..++..++ ++.|++ ++|||.+....
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~ 319 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVS 319 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHH
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHH
Confidence 48899999999998 688998 99999886433
No 57
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=199.14 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=120.8
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHH-HHHHHHHh
Q 016712 118 GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQ-VEKEFHES 196 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q-~~~~~~~~ 196 (384)
+...|+++|.++++.+++++++++++|||+|||++|+++++..+...... ..+.++||++|+++|+.| +.+.+..+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 44579999999999999999999999999999999999998877543211 236789999999999999 77778876
Q ss_pred CC-CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccC------CCCCCccEEEEeCcccccCCChHHHH-HH
Q 016712 197 AP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNA------LNLSEVQFVVLDEADQMLSVGFAEDV-EV 268 (384)
Q Consensus 197 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~------~~~~~l~~vViDEah~~~~~~~~~~~-~~ 268 (384)
.. ++.+..++|+.........+..+++|+|+||+++...+.... ..+.++++|||||||++.+.++...+ ..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred hccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 567777777766555444455568999999999999887643 56788999999999999876654443 33
Q ss_pred HHHHC-------------CCCCcEEEEEcc
Q 016712 269 ILERL-------------PQNRQSMMFSAT 285 (384)
Q Consensus 269 il~~l-------------~~~~q~l~~SAT 285 (384)
++... .++.++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 33221 157899999998
No 58
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=2.6e-24 Score=214.56 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=113.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+++.++ ++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 6999999999999999999999999999999998887653 467999999999999999999994 56
Q ss_pred c-eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcE
Q 016712 201 D-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQS 279 (384)
Q Consensus 201 ~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~ 279 (384)
. +.+++|+... ..+|+|+||+.+...+..- .+++++|||||+|++.+.+|.. +++.+ +..++
T Consensus 159 ~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 159 EYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred cceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 7 7777776532 4799999999987766421 2468999999999999887754 44444 46889
Q ss_pred EEEEccCC
Q 016712 280 MMFSATMP 287 (384)
Q Consensus 280 l~~SAT~~ 287 (384)
+++|||++
T Consensus 222 l~lSATp~ 229 (472)
T 2fwr_A 222 LGLTATFE 229 (472)
T ss_dssp EEEESCCC
T ss_pred EEEecCcc
Confidence 99999997
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=2.6e-27 Score=242.62 Aligned_cols=254 Identities=15% Similarity=0.050 Sum_probs=172.5
Q ss_pred CccC-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEE
Q 016712 100 DISK-LDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLV 178 (384)
Q Consensus 100 ~f~~-l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lv 178 (384)
.|.. +++++.+.+++... ...++|+|+.+++.+++|+|+++++|||||||++|++|++..+.. .++++||
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLv 220 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLI 220 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEE
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEE
Confidence 3444 55676666666543 477899998889999999999999999999999999999998864 3678999
Q ss_pred EecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccccc
Q 016712 179 LAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 179 l~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~ 258 (384)
|+||++||.|+++.++. ..+. +.+.. .. .....+..+.+.|.+.+.+.+... ..++++++|||||||++
T Consensus 221 l~PtreLa~Qi~~~l~~----~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 221 LAPTRVVAAEMEEALRG----LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp EESSHHHHHHHHHHTTT----SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-
T ss_pred EcChHHHHHHHHHHhcC----Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-
Confidence 99999999999988863 3333 22211 00 001123467778888777666544 45889999999999998
Q ss_pred CCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHH
Q 016712 259 SVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALF 337 (384)
Q Consensus 259 ~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (384)
+.+|...+..++..++ +++|+++||||+++.+..+.. .++..+.+...........+... .. ...+...+++
T Consensus 290 ~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ll~~---l~-~~~~~~LVF~ 362 (618)
T 2whx_A 290 DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIPERSWNTGFDW---IT-DYQGKTVWFV 362 (618)
T ss_dssp SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCCSSCCSSSCHH---HH-HCCSCEEEEC
T ss_pred CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCCHHHHHHHHHH---HH-hCCCCEEEEE
Confidence 6668888888888775 689999999999987553322 24444443221100000000000 00 0011112244
Q ss_pred HHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 338 SLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+..+.++.++..|...+..+..+||+ +|++++++|++|+++|+
T Consensus 363 ~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VL 405 (618)
T 2whx_A 363 PSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFV 405 (618)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEE
T ss_pred CChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEE
Confidence 56688899999999999999999984 79999999999999874
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=5.4e-26 Score=225.51 Aligned_cols=236 Identities=15% Similarity=0.037 Sum_probs=160.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 118 GISKLFPIQKAVLEPAMQGRDM-IGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~g~d~-li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
|+..++|+|+ +||.+++++++ ++++|||||||++|++|++..+.. .++++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~-- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALR-- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhc--
Confidence 6788999986 79999999887 999999999999999999987654 36789999999999999999885
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH-CCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQ 275 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~-l~~ 275 (384)
++.+....+.... ....+..|.++|++.+.+.+... ..++++++|||||+|++ +.++......+... .++
T Consensus 70 --g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp --TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred --Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3333221111111 11234679999999998877644 56889999999999987 44344433333332 356
Q ss_pred CCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcc
Q 016712 276 NRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKV 355 (384)
Q Consensus 276 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~ 355 (384)
++|+++||||+|+.+..+ +..++..+................ ... .......++++..+.++.++..|...|+
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~---~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~ 213 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIPERSWNTGFD---WIT-DYQGKTVWFVPSIKAGNDIANCLRKSGK 213 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCCSSCCSSSCH---HHH-HCCSCEEEECSSHHHHHHHHHHHHTTTC
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCccCCchhhHHHHH---HHH-hCCCCEEEEcCCHHHHHHHHHHHHHcCC
Confidence 899999999998864432 233444444321110000000000 000 0001112234456788899999999999
Q ss_pred eEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 356 IIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 356 ~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
.+..+||++. ++++++|++|+++|+
T Consensus 214 ~~~~lh~~~~----~~~~~~f~~g~~~vL 238 (451)
T 2jlq_A 214 RVIQLSRKTF----DTEYPKTKLTDWDFV 238 (451)
T ss_dssp CEEEECTTTH----HHHGGGGGSSCCSEE
T ss_pred eEEECCHHHH----HHHHHhhccCCceEE
Confidence 9999999754 679999999999874
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.91 E-value=1.2e-23 Score=220.52 Aligned_cols=266 Identities=15% Similarity=0.120 Sum_probs=179.1
Q ss_pred CCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 98 GLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQ-GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
...|+++++++.+.+.+...| ..|++.|+++|+.++. +++++++||||+|||+ ++|++..... .. ...+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~--~~--~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE--MP--HLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH--CG--GGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc--cc--cCCCceE
Confidence 356899999999999999988 6799999999988775 4679999999999999 5666622211 11 1126689
Q ss_pred EEEecCHHHHHHHHHHHHHhCCCCceEEEECCC-ChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGT-PISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
+|++|+++|+.|+++.+.+... ..+....|.. .... ....+.+|+|+|||++.+.+... ..+.++++|||||+|
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred EecCchHHHHHHHHHHHHHHhC-Cchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 9999999999999988876542 2211111110 0000 01235799999999998877654 458899999999999
Q ss_pred c-ccCCCh-HHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhh--
Q 016712 256 Q-MLSVGF-AEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQK-- 331 (384)
Q Consensus 256 ~-~~~~~~-~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k-- 331 (384)
. .++..+ ...+..+... .++.|+++||||++.. .+ ..++.+...+.+.+.. ..+.+++......+..
T Consensus 219 ~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~-----~pv~~~~~~~~~~~~~~~ 289 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT-----YPVELYYTPEFQRDYLDS 289 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC-----CCEEEECCSSCCSCHHHH
T ss_pred ccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HH-HHHhcCCCcccccCcc-----cceEEEEecCCchhHHHH
Confidence 5 555332 2334444443 3579999999999753 33 4556655556554321 2344444333222111
Q ss_pred -HHHHHH--------------HHhHhHHHHHHHHHh-----------hcceEEEecCCCChhhhhchhhhhh-----cCC
Q 016712 332 -VENALF--------------SLKQNVMQTAWLMLW-----------LKVIIVSLCMGISHKARGRGPFQLS-----EMD 380 (384)
Q Consensus 332 -~~~l~~--------------~~~~~~~~~~~~l~~-----------~~~~v~~~hg~m~~~eR~~il~~F~-----~~~ 380 (384)
...++. +..+.++.++..|.. .++.+..+||+|+.++|+++++.|+ +|+
T Consensus 290 ~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~ 369 (773)
T 2xau_A 290 AIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG 369 (773)
T ss_dssp HHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCc
Confidence 111111 112566677776664 4788999999999999999999999 898
Q ss_pred cccC
Q 016712 381 VSIY 384 (384)
Q Consensus 381 ~~V~ 384 (384)
.+|+
T Consensus 370 ~kVl 373 (773)
T 2xau_A 370 RKVV 373 (773)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8764
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.91 E-value=1.6e-27 Score=245.85 Aligned_cols=242 Identities=14% Similarity=0.084 Sum_probs=152.9
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEE
Q 016712 113 ALARRGIS-----KLFPIQK-----AVLEPAM------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLC 176 (384)
Q Consensus 113 ~l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 176 (384)
+|..+||. .||++|+ ++|+.++ +|+|+++++|||||||++|++|++..+.. .++++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~ 273 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRT 273 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcE
Confidence 34455666 8999999 9999888 89999999999999999999999988754 36789
Q ss_pred EEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 177 LVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 177 lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
||++||++||.|+++.++.+. +....+.... .-..+.-+-+.+.+.+.+.+... ..++++++|||||+|+
T Consensus 274 lilaPTr~La~Q~~~~l~~~~----i~~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 274 AVLAPTRVVAAEMAEALRGLP----VRYLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EEEESSHHHHHHHHHHTTTSC----CEECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EEEccHHHHHHHHHHHHhcCC----eeeecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 999999999999999887653 2111110000 00001123333444444444433 5689999999999999
Q ss_pred ccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHH
Q 016712 257 MLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENA 335 (384)
Q Consensus 257 ~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 335 (384)
+ +..+...+..+...++ .++|+++||||+++.+..+... ..++ +.+...........+ +.... ...+...+
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v~~~~~~~~~~~~---l~~l~-~~~~~~lV 415 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV-HDVSSEIPDRAWSSG---FEWIT-DYAGKTVW 415 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE-EEEECCCCSSCCSSC---CHHHH-SCCSCEEE
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce-EEEeeecCHHHHHHH---HHHHH-hCCCCEEE
Confidence 7 2223334444444443 6899999999999875433221 1222 111111000000000 00000 00111122
Q ss_pred HHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 336 LFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+++.++.++.++..|...++.+..+|| ++|++++++|++|+++|+
T Consensus 416 F~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VL 460 (673)
T 2wv9_A 416 FVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFV 460 (673)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEE
T ss_pred EECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEE
Confidence 444567888899999999999999999 489999999999999875
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.90 E-value=5.3e-25 Score=224.63 Aligned_cols=217 Identities=13% Similarity=0.088 Sum_probs=153.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.++++|.++++.+..++++++++|||||||++|.+|+++ .+.++||++||++||.|+++.+.+.+ +.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~-g~ 283 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAH-GI 283 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHH-SC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHh-CC
Confidence 355667666666778889999999999999999988775 25689999999999999999887765 34
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc--
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ-- 278 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q-- 278 (384)
.+....|+.. ...+++|+|+||++| +....+.++++++|||||+| +++.+|...+..+++.++...|
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCce
Confidence 5566666643 345689999999997 45667788899999999996 5666788889999999987776
Q ss_pred EEEEEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEE
Q 016712 279 SMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIV 358 (384)
Q Consensus 279 ~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~ 358 (384)
+++||||+++.+. ...+....+.-...... ..... .........+...++++.++.++.++..|...++.+.
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~~~~~i-~~~~~-~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~ 424 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALSNTGEI-PFYGK-AIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAV 424 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECBSCSSE-EETTE-EECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCcccc------cCCcceEEEeecccchh-HHHHh-hhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEE
Confidence 7888999998522 12222221110000000 00000 0001111112223355677889999999999999999
Q ss_pred EecCCCChhhh
Q 016712 359 SLCMGISHKAR 369 (384)
Q Consensus 359 ~~hg~m~~~eR 369 (384)
.+||+|++++|
T Consensus 425 ~lHG~l~q~er 435 (666)
T 3o8b_A 425 AYYRGLDVSVI 435 (666)
T ss_dssp EECTTSCGGGS
T ss_pred EecCCCCHHHH
Confidence 99999998864
No 64
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=8.7e-24 Score=191.62 Aligned_cols=181 Identities=19% Similarity=0.219 Sum_probs=130.7
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 107 SQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
++.+.+.+...+...++++|.++++.+..|++++++||||||||..+.++++....... ...+.+++++.|+++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISA 122 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHH
Confidence 34444444444444589999999999999999999999999999999888888765421 12355899999999999
Q ss_pred HHHHHHHHHhCC-CC--ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc-cCCCh
Q 016712 187 KQVEKEFHESAP-SL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-LSVGF 262 (384)
Q Consensus 187 ~q~~~~~~~~~~-~~--~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~-~~~~~ 262 (384)
.|+.+.+..... .+ .+........ .....+++|+|+||+++.+.+.. .++++++|||||+|++ ++.+|
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHH
T ss_pred HHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHH
Confidence 999999887553 22 2221111100 00113478999999999999876 4889999999999986 66666
Q ss_pred H-HHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhcCCCe
Q 016712 263 A-EDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYLKNPL 302 (384)
Q Consensus 263 ~-~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l~~~~ 302 (384)
. ..+..++... ++.|+++||||++... +...+...|+
T Consensus 195 ~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 195 LLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 6 4566666665 5799999999999875 4444444443
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.89 E-value=1.3e-25 Score=221.94 Aligned_cols=214 Identities=17% Similarity=0.132 Sum_probs=133.0
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCCh
Q 016712 132 PAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~ 211 (384)
.+++|+|+++++|||||||++|++|++..+.. .+++++|++||++||.|+++.++.+ .+.. .++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~-~~~--- 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKF-HTQ--- 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS----CEEE-ESS---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcC----CeEE-ecc---
Confidence 35688999999999999999999999987754 3678999999999999999988754 3322 111
Q ss_pred HHHHHHHhcCCCE-EEECchhHHHHHH--------ccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEE
Q 016712 212 SHQMRALDYGVDA-VVGTPGRVIDLIK--------RNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMM 281 (384)
Q Consensus 212 ~~~~~~~~~~~~I-lV~Tp~~l~~~l~--------~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~ 281 (384)
.+ .|+||+++.+.+. .....++++++|||||+|++ +.++...+..+...+ +.+.|+++
T Consensus 68 -----------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 68 -----------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -----------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -----------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 11 3777766543222 23345889999999999998 443444444443333 36799999
Q ss_pred EEccCChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEec
Q 016712 282 FSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLC 361 (384)
Q Consensus 282 ~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~h 361 (384)
||||+++.+..+... ..++...............+. ... ...+...++++..+.++.++..|...+..+..+|
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lh 208 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQTDIPSEPWNTGHD----WIL-ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLN 208 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEECCCCSSCCSSSCH----HHH-HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECC
T ss_pred EeCCCCchhhhhhhc--CCCeeEeeeccChHHHHHHHH----HHH-hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEec
Confidence 999998875543332 122221111000000000000 000 0001112234455778888899998999999999
Q ss_pred CCCChhhhhchhhhhhcCCcccC
Q 016712 362 MGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 362 g~m~~~eR~~il~~F~~~~~~V~ 384 (384)
| ++|++++++|++|+++|+
T Consensus 209 g----~~R~~~~~~F~~g~~~vL 227 (440)
T 1yks_A 209 R----KTFEREYPTIKQKKPDFI 227 (440)
T ss_dssp S----SSCC--------CCCSEE
T ss_pred c----hhHHHHHhhhcCCCceEE
Confidence 9 579999999999999874
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=5.1e-23 Score=202.92 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=143.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
+|+++++++|||||||++|++|+++.+.. .+++++|++||++|+.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~--- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS--- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc---
Confidence 47899999999999999999999976654 36789999999999999998876 4555544443211
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCChhHHHH
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPPWIRSL 293 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~~~~~~ 293 (384)
.-..+.-+.+.|.+.+.+.+.. ...++++++|||||+|++ +.++......+.... +.++|+++||||+++.+..+
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred --cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1112356778888888777766 566899999999999997 433444444444432 56899999999999864432
Q ss_pred HHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchh
Q 016712 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGP 373 (384)
Q Consensus 294 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il 373 (384)
... +.++ +.+...........+.. ..... .....++++.++.++.++..|...+.++..+||+ +|++++
T Consensus 142 ~~~--~~~i-~~~~~~~~~~~~~~~~~---~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~ 210 (431)
T 2v6i_A 142 PPS--NSPI-IDEETRIPDKAWNSGYE---WITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEY 210 (431)
T ss_dssp CCC--SSCC-EEEECCCCSSCCSSCCH---HHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHT
T ss_pred cCC--CCce-eeccccCCHHHHHHHHH---HHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHH
Confidence 211 1222 11110000000000000 00000 0111223445677888888898889999999997 688999
Q ss_pred hhhhcCCcccC
Q 016712 374 FQLSEMDVSIY 384 (384)
Q Consensus 374 ~~F~~~~~~V~ 384 (384)
++|++|+++|+
T Consensus 211 ~~f~~g~~~vL 221 (431)
T 2v6i_A 211 PKCKSEKWDFV 221 (431)
T ss_dssp THHHHSCCSEE
T ss_pred HhhcCCCCeEE
Confidence 99999999874
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.89 E-value=9.8e-24 Score=217.26 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=152.9
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS 212 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~ 212 (384)
.++|++++++||||||||+ +++..+.. .+.++|++||++||.|+++.+++. ++.+..++|+....
T Consensus 152 ~l~rk~vlv~apTGSGKT~----~al~~l~~---------~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~i 216 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTY----HAIQKYFS---------AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVT 216 (677)
T ss_dssp TSCCEEEEEECCTTSSHHH----HHHHHHHH---------SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEEC
T ss_pred hcCCCEEEEEcCCCCCHHH----HHHHHHHh---------cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEE
Confidence 4578899999999999998 34444433 234699999999999999999987 46777788875431
Q ss_pred HHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCC-CCCcEEEEEccCChhHH
Q 016712 213 HQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQSMMFSATMPPWIR 291 (384)
Q Consensus 213 ~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~-~~~q~l~~SAT~~~~~~ 291 (384)
. ..-....+++++|++.+. ....+++|||||+|++.+.+|+..+..++..++ .+.+++++|||. +.+.
T Consensus 217 v--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~ 285 (677)
T 3rc3_A 217 V--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVM 285 (677)
T ss_dssp C--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHH
T ss_pred e--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHH
Confidence 0 000012577788775442 246789999999999999999999999999988 688999999995 3344
Q ss_pred HHHHHhcCCCeEEEec-CCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhh
Q 016712 292 SLTNKYLKNPLTVDLV-GDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARG 370 (384)
Q Consensus 292 ~~~~~~l~~~~~i~~~-~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~ 370 (384)
.+.... ...+.+... ........... +.......+...++++..+.++.++..|...+..+..+||+|++++|+
T Consensus 286 ~l~~~~-~~~~~v~~~~r~~~l~~~~~~----l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~ 360 (677)
T 3rc3_A 286 ELMYTT-GEEVEVRDYKRLTPISVLDHA----LESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKL 360 (677)
T ss_dssp HHHHHH-TCCEEEEECCCSSCEEECSSC----CCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred HHHHhc-CCceEEEEeeecchHHHHHHH----HHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHH
Confidence 444433 344444321 00000000000 000000112223445556778899999999999999999999999999
Q ss_pred chhhhhhc--CCcccC
Q 016712 371 RGPFQLSE--MDVSIY 384 (384)
Q Consensus 371 ~il~~F~~--~~~~V~ 384 (384)
++++.|++ |+++|+
T Consensus 361 ~~~~~F~~~~g~~~VL 376 (677)
T 3rc3_A 361 AQAKKFNDPNDPCKIL 376 (677)
T ss_dssp HHHHHHHCTTSSCCEE
T ss_pred HHHHHHHccCCCeEEE
Confidence 99999999 888874
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.89 E-value=7.5e-23 Score=209.60 Aligned_cols=166 Identities=19% Similarity=0.140 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEccCCCchhHHHHHHHHHHHHhhh-hccCCCCCCEEEEEecCHHHHHHHH-HHH
Q 016712 121 KLFPIQKAVLEPAMQ----G-RDMIGRARTGTGKTLAFGIPILDKIIKFN-EKHGRGRNPLCLVLAPTRELAKQVE-KEF 193 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~----g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~-~~~~~~~~~~~lvl~Pt~~La~q~~-~~~ 193 (384)
.|+|+|.++++.+++ | ++++++++||+|||++++.. +..+.... .......++++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 56899999999999997544 44443321 0111125788999999999999999 777
Q ss_pred HHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH----ccCCCCCCccEEEEeCcccccCCChHHHHHHH
Q 016712 194 HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK----RNALNLSEVQFVVLDEADQMLSVGFAEDVEVI 269 (384)
Q Consensus 194 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~----~~~~~~~~l~~vViDEah~~~~~~~~~~~~~i 269 (384)
+.+.. .+..+.++ ....+.+|+|+||++|..... ...+...++++|||||||++...+ ...+..+
T Consensus 257 ~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~i 325 (590)
T 3h1t_A 257 TPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREI 325 (590)
T ss_dssp TTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHH
T ss_pred Hhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHH
Confidence 77653 22233322 123457999999999988764 234456789999999999987642 3456777
Q ss_pred HHHCCCCCcEEEEEccCChhHHHHHHHhcC
Q 016712 270 LERLPQNRQSMMFSATMPPWIRSLTNKYLK 299 (384)
Q Consensus 270 l~~l~~~~q~l~~SAT~~~~~~~~~~~~l~ 299 (384)
++.++ +.++++||||+..........++.
T Consensus 326 l~~~~-~~~~l~lTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 326 LEYFE-PAFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp HHHST-TSEEEEEESSCSCTTTHHHHHHSC
T ss_pred HHhCC-cceEEEeccccccccchhHHHHcC
Confidence 77775 578999999987544333333333
No 69
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=5.2e-23 Score=191.54 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=122.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC--
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP-- 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~-- 198 (384)
+|+++|.++++.++.+++.++++|||+|||++++.++...+.. .+.++|||+||++|+.|+.+.+++++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 7999999999999988899999999999999998887776543 234899999999999999999999864
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
...+..++++..... ....+.+|+|+||+.+... ....+.++++|||||||++.+ ..+..++..+....+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 345666667654432 2223589999999877443 223467899999999999864 467788888878999
Q ss_pred EEEEEccCChhHHH
Q 016712 279 SMMFSATMPPWIRS 292 (384)
Q Consensus 279 ~l~~SAT~~~~~~~ 292 (384)
++++|||+++....
T Consensus 255 ~l~lSATp~~~~~~ 268 (282)
T 1rif_A 255 KFGLSGSLRDGKAN 268 (282)
T ss_dssp EEEECSSCCTTSTT
T ss_pred EEEEeCCCCCcchH
Confidence 99999999876433
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.87 E-value=2.7e-23 Score=206.50 Aligned_cols=220 Identities=13% Similarity=0.059 Sum_probs=142.0
Q ss_pred HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCC
Q 016712 131 EPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTP 210 (384)
Q Consensus 131 ~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~ 210 (384)
..+.+++++++++|||||||++|++|++..+.. .++++||++||++|+.|+++.++. +.+....+...
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~~~~~ 83 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRG----LPVRYQTSAVQ 83 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTT----SCEEECC----
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcC----ceEeEEecccc
Confidence 345678899999999999999999999988754 367899999999999999998873 33322111111
Q ss_pred hHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccc-----cCCChHHHHHHHHHHCCCCCcEEEEEcc
Q 016712 211 ISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQM-----LSVGFAEDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 211 ~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~-----~~~~~~~~~~~il~~l~~~~q~l~~SAT 285 (384)
. .-..+..+.++|.+.+...+... ..++++++|||||||++ +..+|.... . ..++.|+++||||
T Consensus 84 ~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~SAT 152 (459)
T 2z83_A 84 R-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFMTAT 152 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEECSS
T ss_pred c-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEEEcC
Confidence 0 01223467788888887766544 56889999999999984 332222211 1 1368999999999
Q ss_pred CChhHHHHHHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCC
Q 016712 286 MPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLKQNVMQTAWLMLWLKVIIVSLCMGIS 365 (384)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~ 365 (384)
++..+..+... ..|+.+.............+ ..... ..+...++++..+.++.++..|...++.+..+||+
T Consensus 153 ~~~~~~~~~~~--~~pi~~~~~~~~~~~~~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~-- 223 (459)
T 2z83_A 153 PPGTTDPFPDS--NAPIHDLQDEIPDRAWSSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK-- 223 (459)
T ss_dssp CTTCCCSSCCC--SSCEEEEECCCCSSCCSSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred CCcchhhhccC--CCCeEEecccCCcchhHHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH--
Confidence 99775433221 23443311100000000000 00000 00111223445678889999999999999999994
Q ss_pred hhhhhchhhhhhcCCcccC
Q 016712 366 HKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 366 ~~eR~~il~~F~~~~~~V~ 384 (384)
+|++++++|++|+++|+
T Consensus 224 --~R~~~~~~f~~g~~~iL 240 (459)
T 2z83_A 224 --SYDTEYPKCKNGDWDFV 240 (459)
T ss_dssp --CCCCCGGGSSSCCCSEE
T ss_pred --HHHHHHhhccCCCceEE
Confidence 89999999999999874
No 71
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=4.3e-20 Score=167.49 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
..++++|.++++.+++++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 36999999999999999999999999999999987776532 467999999999999999999994 4
Q ss_pred Cc-eEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 200 LD-TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 200 ~~-~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
.. +..+.|+... ..+|+|+|++.+......- ..++++|||||+|++.+..+. .++..++ ..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCE
Confidence 66 6666665432 4799999999987665421 246899999999999887654 3455554 678
Q ss_pred EEEEEccCChh
Q 016712 279 SMMFSATMPPW 289 (384)
Q Consensus 279 ~l~~SAT~~~~ 289 (384)
++++|||+++.
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999998764
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.83 E-value=1.1e-19 Score=182.33 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=110.5
Q ss_pred CCcHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPA----MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i----~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|+|+|.++++.+ ..+++.+++.+||+|||+.++.. +..+... ....++|||+|+ .|+.||.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 6999999999876 46789999999999999987544 4443321 234679999994 6899999999999
Q ss_pred CCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCC
Q 016712 197 APSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN 276 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~ 276 (384)
++++.+.+++|+... ....+.+|+|+|++.+..... +...++++||+||||++.+.+. .....+..++ .
T Consensus 109 ~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 109 APHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp CTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred CCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 988888777766532 112347999999998865433 2234689999999999876542 3344555564 4
Q ss_pred CcEEEEEccCCh
Q 016712 277 RQSMMFSATMPP 288 (384)
Q Consensus 277 ~q~l~~SAT~~~ 288 (384)
...+++||||..
T Consensus 178 ~~~l~LTaTP~~ 189 (500)
T 1z63_A 178 KYRIALTGTPIE 189 (500)
T ss_dssp EEEEEECSSCST
T ss_pred CcEEEEecCCCC
Confidence 678999999854
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.83 E-value=7.2e-20 Score=196.08 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHHhC--------------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHH
Q 016712 121 KLFPIQKAVLEPAMQ--------------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELA 186 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~--------------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La 186 (384)
.|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 499999999998865 368999999999999997 666654421 12346899999999999
Q ss_pred HHHHHHHHHhCCCCceEEEECCCChHHHHHHHh-cCCCEEEECchhHHHHHHccC--CCCCCccEEEEeCcccccCCChH
Q 016712 187 KQVEKEFHESAPSLDTICVYGGTPISHQMRALD-YGVDAVVGTPGRVIDLIKRNA--LNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 187 ~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~Tp~~l~~~l~~~~--~~~~~l~~vViDEah~~~~~~~~ 263 (384)
.|+.+.|..+.++ .+.++.+.......+. .+.+|+|+||++|...+.... ..++...+||+||||++.. +
T Consensus 344 ~Q~~~~f~~f~~~----~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPD----SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---G 416 (1038)
T ss_dssp HHHHHHHHTTSTT----CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---H
T ss_pred HHHHHHHHHhccc----ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---h
Confidence 9999999998753 1234445555555564 468999999999998876532 2355788999999999653 3
Q ss_pred HHHHHHHHHCCCCCcEEEEEccCChh
Q 016712 264 EDVEVILERLPQNRQSMMFSATMPPW 289 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT~~~~ 289 (384)
..+..+.+.++ +.++++|||||...
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCCS
T ss_pred HHHHHHHHhCC-cccEEEEeCCcccc
Confidence 34566777775 58999999999753
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.81 E-value=1e-19 Score=195.54 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQG--RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.|+|+|.+++..++.. .++|++++||+|||++++..+...+.. +...++|||+|+ .|+.||.+++.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 6899999999988764 589999999999999997777665533 334579999999 99999999998877
Q ss_pred CCceEEEECCCChHHHHH--HHhcCCCEEEECchhHHHHHHc-cCCCCCCccEEEEeCcccccCCChH-HHHHHHHHHC-
Q 016712 199 SLDTICVYGGTPISHQMR--ALDYGVDAVVGTPGRVIDLIKR-NALNLSEVQFVVLDEADQMLSVGFA-EDVEVILERL- 273 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~--~~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~l~~vViDEah~~~~~~~~-~~~~~il~~l- 273 (384)
++++.++.++........ ......+|+|+|++.+...... ..+...++++|||||||++...+.. ......+..+
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 577666654322111110 1112469999999877532111 1123457899999999999754321 1112222222
Q ss_pred CCCCcEEEEEccCCh
Q 016712 274 PQNRQSMMFSATMPP 288 (384)
Q Consensus 274 ~~~~q~l~~SAT~~~ 288 (384)
.....++++||||.+
T Consensus 304 ~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQ 318 (968)
T ss_dssp TTCSSEEESCSSCSS
T ss_pred hcCCcEEEEEcCCcc
Confidence 245679999999853
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.78 E-value=4.6e-19 Score=182.41 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=109.3
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
+|+ +||++|..+++.+++|+ |..+.||+|||++|.+|++...+ .|.+++|++||++||.|+++.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 599 89999999999999998 99999999999999999975542 3668999999999999999999887
Q ss_pred CC--CCceEEEECCCChHHHHHHHhcCCCEEEECchhH-HHHHHccC------CCCC---CccEEEEeCccccc
Q 016712 197 AP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRV-IDLIKRNA------LNLS---EVQFVVLDEADQML 258 (384)
Q Consensus 197 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~---~l~~vViDEah~~~ 258 (384)
+. ++.+.+++||.+.. .+....++||+||||++| .+++..+. +.++ +++++||||+|.|+
T Consensus 144 ~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 54 67788888987743 344455799999999999 88887663 4577 89999999999887
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.2e-17 Score=169.77 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAM----QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++|+|.+++..+. .+++.|++.++|.|||+.++..+...+... .....+|||+| ..|+.|+.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 69999999998665 789999999999999998755554433221 22455899999 77899999999999
Q ss_pred CCCCceEEEECCCChHHHHHHH------------hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHH
Q 016712 197 APSLDTICVYGGTPISHQMRAL------------DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAE 264 (384)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~ 264 (384)
++++.+.+++|+.......... ....+|+|+|++.+...... +...++++|||||||++-+.+ .
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s 384 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--S 384 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--S
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--h
Confidence 9999988888876555443332 12478999999998664322 112367899999999985432 2
Q ss_pred HHHHHHHHCCCCCcEEEEEccCC
Q 016712 265 DVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 265 ~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
.....+..+. ....+++||||.
T Consensus 385 ~~~~~l~~l~-~~~rl~LTgTPi 406 (800)
T 3mwy_W 385 SLYESLNSFK-VANRMLITGTPL 406 (800)
T ss_dssp HHHHHHTTSE-EEEEEEECSCCC
T ss_pred HHHHHHHHhh-hccEEEeeCCcC
Confidence 3344445553 455788999983
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=5.3e-15 Score=152.66 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=108.0
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEK 191 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~ 191 (384)
.++|||.+++..+. .+...|+..+||.|||+.++..+...+..... ......++|||+|+ .|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHH
Confidence 69999999998863 45678999999999999876665544322111 11123469999996 88999999
Q ss_pred HHHHhCCC-CceEEEECCCChHH--HHHHHhc------CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 192 EFHESAPS-LDTICVYGGTPISH--QMRALDY------GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 192 ~~~~~~~~-~~~~~~~g~~~~~~--~~~~~~~------~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
++.++.+. +.+..++++..... ....+.. ..+|+|+|++.+.... ..+...++++||+||+|++-+...
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChhh
Confidence 99998753 55666666543221 1112211 3789999999886543 233345789999999999876532
Q ss_pred HHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 263 AEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 263 ~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.....+..+. ....+++||||..
T Consensus 210 --~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 210 --QTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSG
T ss_pred --HHHHHHHhcc-cCcEEEEecCccc
Confidence 2233344443 4578999999843
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.65 E-value=8.2e-16 Score=155.98 Aligned_cols=129 Identities=18% Similarity=0.122 Sum_probs=99.0
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
|| .++|+|.+++.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 45 599999997765 4578999999999999999999999872 578999999999999999999
Q ss_pred HHhCC--CCceEEEECCCCh---------------------------------HHHH------------------HHHhc
Q 016712 194 HESAP--SLDTICVYGGTPI---------------------------------SHQM------------------RALDY 220 (384)
Q Consensus 194 ~~~~~--~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~ 220 (384)
..+.. ++++.++.|.... .... +....
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 88754 4556655552110 1111 22334
Q ss_pred CCCEEEECchhHHHHHHccCCCC-CCccEEEEeCcccccC
Q 016712 221 GVDAVVGTPGRVIDLIKRNALNL-SEVQFVVLDEADQMLS 259 (384)
Q Consensus 221 ~~~IlV~Tp~~l~~~l~~~~~~~-~~l~~vViDEah~~~~ 259 (384)
++||||+|++.|.+...+..+.+ .+..+|||||||++.+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 68999999999988765443333 4678999999999987
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.59 E-value=2.5e-15 Score=152.05 Aligned_cols=127 Identities=21% Similarity=0.196 Sum_probs=88.1
Q ss_pred cCCCCCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 117 RGISKLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
.|| .++|+|.+++.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 477 799999998654 4688999999999999999999998753 56899999999999999999
Q ss_pred HHHhCCCCceEEEECCCC--------hH---------------------------------------HHHHHHhcCCCEE
Q 016712 193 FHESAPSLDTICVYGGTP--------IS---------------------------------------HQMRALDYGVDAV 225 (384)
Q Consensus 193 ~~~~~~~~~~~~~~g~~~--------~~---------------------------------------~~~~~~~~~~~Il 225 (384)
+..+. +++..+.|... .. ...+....++|||
T Consensus 71 ~~~l~--~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 71 AKLLG--LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp HGGGT--CCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred HHhcC--CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 88853 33333322110 00 0001112357999
Q ss_pred EECchhHHHHHHccCC-------CCCCccEEEEeCccccc
Q 016712 226 VGTPGRVIDLIKRNAL-------NLSEVQFVVLDEADQML 258 (384)
Q Consensus 226 V~Tp~~l~~~l~~~~~-------~~~~l~~vViDEah~~~ 258 (384)
|+|+..|.+....+.. .+.+..+|||||||++.
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999875543221 24577899999999994
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.50 E-value=1.1e-12 Score=133.22 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=97.5
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 117 RGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 117 ~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.|. .|++.|....-.+..|+ |..+.||+|||+++.+|++-..+ .|..+.|++|+..||.|-.+.+..+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHHHHH
Confidence 477 59999999988888887 99999999999999999985543 3777999999999999988888876
Q ss_pred CC--CCceEEEECCC------------------------------------------------ChHHHHHHHhcCCCEEE
Q 016712 197 AP--SLDTICVYGGT------------------------------------------------PISHQMRALDYGVDAVV 226 (384)
Q Consensus 197 ~~--~~~~~~~~g~~------------------------------------------------~~~~~~~~~~~~~~IlV 226 (384)
+. ++.+.+++... ......+.-...+||++
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItY 219 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTY 219 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEE
Confidence 54 67788877621 00111122233489999
Q ss_pred ECchhH-HHHHHccC------CCCCCccEEEEeCccccc
Q 016712 227 GTPGRV-IDLIKRNA------LNLSEVQFVVLDEADQML 258 (384)
Q Consensus 227 ~Tp~~l-~~~l~~~~------~~~~~l~~vViDEah~~~ 258 (384)
||...+ .++|+.+. .....+.+.||||+|.++
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 999877 34554432 224568999999999874
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.44 E-value=3.1e-12 Score=132.13 Aligned_cols=73 Identities=29% Similarity=0.347 Sum_probs=55.4
Q ss_pred CCCCCcHHHHHHHHHHhC----CC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHH
Q 016712 118 GISKLFPIQKAVLEPAMQ----GR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKE 192 (384)
Q Consensus 118 g~~~~~~~Q~~~i~~i~~----g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~ 192 (384)
+| .|++.|..++..+.. |. ..++.|.||||||+++. .++... +..+|||+|+..+|.|++..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a-~~~~~~-----------~~~~lvv~~~~~~A~ql~~e 72 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL-----------GRPALVLAPNKILAAQLAAE 72 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-----------TCCEEEEESSHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEecCHHHHHHHHHH
Confidence 56 799999999886543 33 46789999999998653 233332 23499999999999999999
Q ss_pred HHHhCCCCceE
Q 016712 193 FHESAPSLDTI 203 (384)
Q Consensus 193 ~~~~~~~~~~~ 203 (384)
|+.++++-.+.
T Consensus 73 l~~~~~~~~V~ 83 (664)
T 1c4o_A 73 FRELFPENAVE 83 (664)
T ss_dssp HHHHCTTSEEE
T ss_pred HHHHCCCCeEE
Confidence 99998654433
No 82
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.31 E-value=4.3e-12 Score=130.02 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEP----AMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~----i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
+|+|.|.+.+.. +..|+++++.+|||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 689999998864 5578999999999999999999999998754 2578999999999999999998875
Q ss_pred C
Q 016712 197 A 197 (384)
Q Consensus 197 ~ 197 (384)
.
T Consensus 75 ~ 75 (620)
T 4a15_A 75 S 75 (620)
T ss_dssp H
T ss_pred h
Confidence 3
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.28 E-value=8.5e-11 Score=121.37 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 016712 121 KLFPIQKAVLEPAM----QGR-DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHE 195 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~----~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~ 195 (384)
.|+.+|..++..+. .|. ..++.|-||||||++.. .++... +..+|||+|+..+|.|++..++.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a-~~~~~~-----------~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVS-NLIKEV-----------NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-----------CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 69999998887654 343 47788999999998542 233332 22499999999999999999999
Q ss_pred hCCCCceEE
Q 016712 196 SAPSLDTIC 204 (384)
Q Consensus 196 ~~~~~~~~~ 204 (384)
++++-.+..
T Consensus 80 ~~~~~~v~~ 88 (661)
T 2d7d_A 80 FFPNNAVEY 88 (661)
T ss_dssp HCTTSEEEE
T ss_pred HcCCCcEEE
Confidence 986544433
No 84
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.97 E-value=1.2e-09 Score=111.72 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=94.7
Q ss_pred HHHHHHHHcC-CCCCcHHHHHHHHHHhCCCcEEEEccCCCchh--HHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 109 DIVAALARRG-ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKT--LAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 109 ~l~~~l~~~g-~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT--~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
.+...|...+ -...++.|..+++.++.++++++.|++|+||| +.++++.+..+. ...+.++++++||..+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~-------~~~~~~vll~APTg~A 208 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKA 208 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-------SSCCCCEEEEBSSHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------hcCCCeEEEEeCChhH
Confidence 3445555432 12237899999999999999999999999999 556666665431 1235689999999999
Q ss_pred HHHHHHHHHHhCCCCceEEE-ECCCChHHHHHHHhcCCC-EEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChH
Q 016712 186 AKQVEKEFHESAPSLDTICV-YGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFA 263 (384)
Q Consensus 186 a~q~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~ 263 (384)
|.++.+.+......+++... ..... .. ....+ ++-.+|+.. . +........++++|||||++ |++ .
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~~~~~--~~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~ 276 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQKKRIP--ED----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---L 276 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCCCSCS--CC----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---H
T ss_pred HHHHHHHHHHHHhcCCCCHHHHhccc--hh----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---H
Confidence 99988877653221110000 00000 00 00011 111222211 1 11111222378999999999 544 4
Q ss_pred HHHHHHHHHCCCCCcEEEEEcc
Q 016712 264 EDVEVILERLPQNRQSMMFSAT 285 (384)
Q Consensus 264 ~~~~~il~~l~~~~q~l~~SAT 285 (384)
..+..++..++.+.|++++.-.
T Consensus 277 ~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 277 PMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp HHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHhCCCCCEEEEEcch
Confidence 5678889999989999998543
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.37 E-value=4.6e-06 Score=82.31 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=80.6
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCC-----CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 110 IVAALARRGISKLFPIQKAVLEPAMQG-----RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~i~~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
|.....-+.|..+++.|++++..++.. ..+++.|+.|+|||.+. ..++..+... ....+++++||..
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~ 85 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHA 85 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHH
Confidence 334444567888999999999876532 38999999999999754 4445555431 1236999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH-hc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh
Q 016712 185 LAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL-DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF 262 (384)
Q Consensus 185 La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~ 262 (384)
.+..+.+.+. .....++. ..... .. +....+.. .....+...++|||||++.+.
T Consensus 86 Aa~~l~~~~~-----~~~~T~h~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~~---- 141 (459)
T 3upu_A 86 AKKILSKLSG-----KEASTIHS------ILKINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMYD---- 141 (459)
T ss_dssp HHHHHHHHHS-----SCEEEHHH------HHTEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGCC----
T ss_pred HHHHHHhhhc-----cchhhHHH------HhccCcccccccchhcc---------cccccccCCCEEEEECchhCC----
Confidence 8877665541 11111110 00000 00 00000000 112345678999999999653
Q ss_pred HHHHHHHHHHCCCCCcEEEEE
Q 016712 263 AEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 263 ~~~~~~il~~l~~~~q~l~~S 283 (384)
...+..++..++...+++++.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEEC
Confidence 235556667676666666654
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.34 E-value=9.3e-06 Score=83.22 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.. ..+.++++++||...+.++.+.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 45689999999999888778999999999999864 334444432 146689999999999999999887653
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.31 E-value=4.5e-06 Score=84.52 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=80.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.+++.|.+++..+..++.+++.|+.|+|||... ..++..+.. .+.++++++||...+..+.+... .
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~-----~ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG-----R 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-----S
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-----c
Confidence 589999999999999999999999999999753 334443332 35679999999999887765432 1
Q ss_pred ceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEE
Q 016712 201 DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSM 280 (384)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l 280 (384)
....++ +.+..... .+..........++|||||++.+. ...+..+++.++...+++
T Consensus 255 ~a~Tih---------~ll~~~~~-----------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 255 TASTVH---------RLLGYGPQ-----------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp CEEEHH---------HHTTEETT-----------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred cHHHHH---------HHHcCCcc-----------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 111100 00000000 000111223467899999999653 235667777787777777
Q ss_pred EEE
Q 016712 281 MFS 283 (384)
Q Consensus 281 ~~S 283 (384)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.4e-05 Score=84.03 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 456899999999999887778999999999998643 333333321 25679999999999999999988754
No 89
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.22 E-value=3.9e-06 Score=86.44 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRD-MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++.|.+|+..++..++ .||.||+|+|||.+..-. +..+.. .+.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~-I~~l~~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEI-ILQAVK--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHH-HHHHHH--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHH-HHHHHh--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 578999999999886654 789999999999875433 333333 36689999999999999999887654
No 90
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.22 E-value=1.8e-05 Score=83.14 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 119 ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 119 ~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
...+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.. ..+.++++++||..-+.++.+.+.+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 34689999999999988878899999999999864 344444432 146689999999999999999887654
No 91
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.98 E-value=1.4e-05 Score=69.16 Aligned_cols=88 Identities=11% Similarity=-0.023 Sum_probs=57.0
Q ss_pred HHHhcCCCeEEEecCCCcccccCCeEEEEEEeccchhhHHHHHHHHh-------------HhHHHHHHHHHhhcceEEEe
Q 016712 294 TNKYLKNPLTVDLVGDSDQKLADGISLYSIATSMNMQKVENALFSLK-------------QNVMQTAWLMLWLKVIIVSL 360 (384)
Q Consensus 294 ~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~-------------~~~~~~~~~l~~~~~~v~~~ 360 (384)
...|+.+|..|.+.. ......++.++++.+. ...|...++..+. +.++.++..|...|+.+..+
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVK-EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp ----------------------CCSEEEEEECC-GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcC-hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 356788999888743 2355678888888775 4567776655443 67788888999999999999
Q ss_pred cCCCChhhhhchhhhhhcCCcccC
Q 016712 361 CMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 361 hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
||+|++++|++++++|++|+++|+
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vL 108 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVL 108 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999998874
No 92
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.78 E-value=5.6e-05 Score=64.15 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=59.6
Q ss_pred ccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcC
Q 016712 314 LADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEM 379 (384)
Q Consensus 314 ~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~ 379 (384)
...++.++++.+...+.|...+...+. +.+..++..|...|..+..+||+|++++|++++++|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456789999988766667776654433 677788889999999999999999999999999999999
Q ss_pred CcccC
Q 016712 380 DVSIY 384 (384)
Q Consensus 380 ~~~V~ 384 (384)
+++|+
T Consensus 84 ~~~vL 88 (175)
T 2rb4_A 84 KEKVL 88 (175)
T ss_dssp SCSEE
T ss_pred CCeEE
Confidence 98874
No 93
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.67 E-value=0.00016 Score=74.11 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
..+++.|.+++.. .+..++|.|+.|||||.+..--+...+... .....++|++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-----~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE-----NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS-----CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC-----CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 357899999999999997544444443221 1123579999999999999999998763
No 94
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.63 E-value=0.00014 Score=61.00 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCc
Q 016712 316 DGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDV 381 (384)
Q Consensus 316 ~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~ 381 (384)
.++.++++.+...+.|.+.+...+. +.++.++..|...+..+..+||+|++++|++++++|++|++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 3567788877755557776644332 67778888898899999999999999999999999999998
Q ss_pred ccC
Q 016712 382 SIY 384 (384)
Q Consensus 382 ~V~ 384 (384)
+|+
T Consensus 82 ~vl 84 (165)
T 1fuk_A 82 RIL 84 (165)
T ss_dssp SEE
T ss_pred EEE
Confidence 874
No 95
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.55 E-value=0.00025 Score=59.37 Aligned_cols=71 Identities=13% Similarity=-0.091 Sum_probs=56.5
Q ss_pred cccCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhc
Q 016712 313 KLADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSE 378 (384)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~ 378 (384)
....++.++++.+. ...|.+.+...+. +.++.++..|...|+.+..+||+|++++|++++++|++
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34556888888775 4567665544332 67778888899999999999999999999999999999
Q ss_pred CCcccC
Q 016712 379 MDVSIY 384 (384)
Q Consensus 379 ~~~~V~ 384 (384)
|+++|+
T Consensus 84 g~~~vl 89 (163)
T 2hjv_A 84 GEYRYL 89 (163)
T ss_dssp TSCSEE
T ss_pred CCCeEE
Confidence 998874
No 96
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.54 E-value=0.00022 Score=60.35 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=54.9
Q ss_pred cCCeEEEEEEeccchhhHHHHHHHHh--------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCC
Q 016712 315 ADGISLYSIATSMNMQKVENALFSLK--------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMD 380 (384)
Q Consensus 315 ~~~i~~~~~~~~~~~~k~~~l~~~~~--------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~ 380 (384)
..++.++++.+. ...|...+...+. +.++.++..|...|+.+..+||+|++++|++++++|++|+
T Consensus 3 ~~~i~q~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECC-hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 356778887775 4567666544332 6777888889999999999999999999999999999999
Q ss_pred cccC
Q 016712 381 VSIY 384 (384)
Q Consensus 381 ~~V~ 384 (384)
++|+
T Consensus 82 ~~vL 85 (172)
T 1t5i_A 82 RRIL 85 (172)
T ss_dssp CSEE
T ss_pred CcEE
Confidence 8874
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.44 E-value=0.0012 Score=55.96 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHh---------CCCcEEEEccCCCchhHHH
Q 016712 123 FPIQKAVLEPAM---------QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 123 ~~~Q~~~i~~i~---------~g~d~li~a~TGsGKT~~~ 153 (384)
.+.|.+++..+. .|+.+++.||+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 455666655443 4688999999999999854
No 98
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.36 E-value=0.00036 Score=59.83 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=49.1
Q ss_pred cccCCeEEEEEEeccchhhHHHHHHHHh---------------HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhh
Q 016712 313 KLADGISLYSIATSMNMQKVENALFSLK---------------QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLS 377 (384)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~---------------~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~ 377 (384)
....++.++++.+. ...|.+.+...+. +.++.++..|...|+.+..+||+|++++|++++++|+
T Consensus 15 ~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 45677888888876 4567666644433 5667888888888999999999999999999999999
Q ss_pred cCCcccC
Q 016712 378 EMDVSIY 384 (384)
Q Consensus 378 ~~~~~V~ 384 (384)
+|+++|+
T Consensus 94 ~g~~~vL 100 (185)
T 2jgn_A 94 SGKSPIL 100 (185)
T ss_dssp HTSSSEE
T ss_pred cCCCeEE
Confidence 9998874
No 99
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.30 E-value=0.00022 Score=68.36 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..++++.|+...|..+.+.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 6899999999877545668999999999999766555543332 24668999999999999888777654
No 100
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.30 E-value=0.00057 Score=69.48 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=85.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.++|+|...+..+-..+.+++..+-|+|||.+....++..+.. ..+..++++.|+...|.++.+.++......
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4899999999877555779999999999999765544444432 235689999999999999988877754322
Q ss_pred c----eEEE-ECCCChHHHHHHHhcCCCEEEEC--chhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 201 D----TICV-YGGTPISHQMRALDYGVDAVVGT--PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 201 ~----~~~~-~g~~~~~~~~~~~~~~~~IlV~T--p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
+ .... ..... -.+.+|..|.+.+ |+.+ .. .+.+++|+||+|.+-+ ....+..+...+
T Consensus 236 p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG-----~~~~~~iiDE~~~~~~--~~~l~~~~~~~l 299 (592)
T 3cpe_A 236 PDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----RG-----NSFAMIYIEDCAFIPN--FHDSWLAIQPVI 299 (592)
T ss_dssp CTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----HH-----SCCSEEEEETGGGCTT--HHHHHHHHHHHH
T ss_pred hHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc----cC-----CCcceEEEehhccCCc--hhHHHHHHHHHh
Confidence 2 1111 11100 0112344444432 3322 11 1367899999998654 223334444444
Q ss_pred C--CCCcEEEEEccCCh
Q 016712 274 P--QNRQSMMFSATMPP 288 (384)
Q Consensus 274 ~--~~~q~l~~SAT~~~ 288 (384)
. .+.++++ ..|+..
T Consensus 300 ~~~~~~~ii~-isTP~~ 315 (592)
T 3cpe_A 300 SSGRRSKIII-TTTPNG 315 (592)
T ss_dssp SSSSCCEEEE-EECCCT
T ss_pred ccCCCceEEE-EeCCCC
Confidence 3 2344444 345543
No 101
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.02 E-value=0.0033 Score=61.05 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=52.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
-.++.|+.|+|||... ..+.. ....+|++||++++.++.+.+.+.+. .
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~---------~~~~lVlTpT~~aa~~l~~kl~~~~~--~---------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVN---------FEEDLILVPGRQAAEMIRRRANASGI--I---------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCC---------TTTCEEEESCHHHHHHHHHHHTTTSC--C----------------
T ss_pred EEEEEcCCCCCHHHHH-----HHHhc---------cCCeEEEeCCHHHHHHHHHHhhhcCc--c----------------
Confidence 3678999999999853 22211 13479999999999998888754321 0
Q ss_pred HhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCC
Q 016712 218 LDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV 260 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~ 260 (384)
.....-|.|-++++. .......-..++|||||+- |.+.
T Consensus 211 --~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp --CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCH
T ss_pred --ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCH
Confidence 001233556554321 2122222348899999998 4443
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.01 E-value=0.00056 Score=58.57 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=27.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
.|+-.++.|+.|+|||...+--+ ..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHH--------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHH--------CCCeEEEEeecc
Confidence 35567899999999999654333 33322 356799998884
No 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.017 Score=49.63 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
..-.+|||||+|.+... ....+..++...+.+..+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45678999999987543 34455566666555666665543
No 104
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=95.90 E-value=0.00016 Score=60.92 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=47.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 332 VENALFSLKQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
...++++..+.++.++..|...++.+..+||+|++++|++++++|++|+++|+
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 34566777888999999999999999999999999999999999999998875
No 105
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.78 E-value=0.0022 Score=59.25 Aligned_cols=66 Identities=17% Similarity=0.032 Sum_probs=51.6
Q ss_pred eEEEEEEeccchhhHHHHHHHH--------------hHhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 318 ISLYSIATSMNMQKVENALFSL--------------KQNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~~~--------------~~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+.++++.+. ...|.+.+...+ .+.++.++..|...|+.+..+||+|++++|++++++|++|+++|
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 345555554 355666554332 26777888889889999999999999999999999999999887
Q ss_pred C
Q 016712 384 Y 384 (384)
Q Consensus 384 ~ 384 (384)
+
T Consensus 82 L 82 (300)
T 3i32_A 82 L 82 (300)
T ss_dssp E
T ss_pred E
Confidence 4
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.77 E-value=0.0027 Score=56.06 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.|.-.++.|++|+|||...+--+ ..+.. .+.+++++.|...- . . .......+ | ...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~--------~g~kVli~~~~~d~--r-~--~~~i~srl------G-~~~--- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEY--------ADVKYLVFKPKIDT--R-S--IRNIQSRT------G-TSL--- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHH--------TTCCEEEEEECCCG--G-G--CSSCCCCC------C-CSS---
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHh--------cCCEEEEEEeccCc--h-H--HHHHHHhc------C-CCc---
Confidence 35567889999999998654433 33322 36678888876531 0 0 00111111 1 000
Q ss_pred HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 215 MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+-+.+...+...+.... .-.+.++|||||++.+... ....+..+.. .+.++++..
T Consensus 67 -------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~---~gi~Vil~G 123 (223)
T 2b8t_A 67 -------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDDR-ICEVANILAE---NGFVVIISG 123 (223)
T ss_dssp -------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCTH-HHHHHHHHHH---TTCEEEEEC
T ss_pred -------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcHH-HHHHHHHHHh---CCCeEEEEe
Confidence 1234555666666655432 2345789999999974332 2223333222 256666543
No 107
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.74 E-value=0.0074 Score=58.88 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=24.7
Q ss_pred CccEEEEeCcccccCC-ChHHHHHHHHHHC-CCCCcEEEEEcc
Q 016712 245 EVQFVVLDEADQMLSV-GFAEDVEVILERL-PQNRQSMMFSAT 285 (384)
Q Consensus 245 ~l~~vViDEah~~~~~-~~~~~~~~il~~l-~~~~q~l~~SAT 285 (384)
+.++|+|||+|.+.+. .....+..++..+ ..+.++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999998763 2334444444443 345666664443
No 108
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.71 E-value=0.0029 Score=55.23 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCcccC
Q 016712 341 QNVMQTAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSIY 384 (384)
Q Consensus 341 ~~~~~~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V~ 384 (384)
+.++.++..|...|+.+..+||+|++++|++++++|++|+++|+
T Consensus 42 ~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 42 AETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 67778888898899999999999999999999999999998874
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.0012 Score=54.38 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHH
Q 016712 135 QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~ 152 (384)
.|..+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999984
No 110
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.0029 Score=55.62 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999854
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.62 E-value=0.011 Score=54.79 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999854
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.58 E-value=0.022 Score=55.22 Aligned_cols=132 Identities=13% Similarity=0.117 Sum_probs=73.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe--cCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~--Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.-++++|++|+|||....--+ ..+.. .+.+++++. +.+.-+.+....+.... ++++.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--------~G~kVllv~~D~~r~~a~eqL~~~~~~~-gv~~~~~~~~~----- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--------RGYKVGLVAADVYRPAAYDQLLQLGNQI-GVQVYGEPNNQ----- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--------TTCCEEEEEECCSCHHHHHHHHHHHHTT-TCCEECCTTCS-----
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--------cCCeEEEEecCccchhHHHHHHHHHHhc-CCceeeccccC-----
Confidence 357889999999998643222 22221 255566665 33443433333333332 23322111111
Q ss_pred HHHHhcCCCEEEECchhHH-HHHHccCCCCCCccEEEEeCccccc---CCChHHHHHHHHHHCCCCCcEEEEEccCChhH
Q 016712 215 MRALDYGVDAVVGTPGRVI-DLIKRNALNLSEVQFVVLDEADQML---SVGFAEDVEVILERLPQNRQSMMFSATMPPWI 290 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~-~~l~~~~~~~~~l~~vViDEah~~~---~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~ 290 (384)
.|..+. ..+. .....+.++||||++-+.. +..+..++..+.+.+.++.-+++++|+.....
T Consensus 163 -------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 163 -------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp -------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred -------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 121111 1111 1223578899999998654 33466777778777777777888899876666
Q ss_pred HHHHHHhc
Q 016712 291 RSLTNKYL 298 (384)
Q Consensus 291 ~~~~~~~l 298 (384)
...+..|.
T Consensus 228 ~~~a~~f~ 235 (433)
T 3kl4_A 228 YDLASRFH 235 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.47 E-value=0.0059 Score=53.31 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
|+=.++.|+.|+|||...+--+.... ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~---------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ---------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH---------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCEEEEEEeccC
Confidence 44457899999999986654444443 23677999999764
No 114
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.44 E-value=0.0089 Score=51.34 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=27.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
.|+=.++.|++|+|||...+--+ ..... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a-~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRI-RRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH-HHHHH--------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHH-HHHHH--------CCCEEEEEEecc
Confidence 34557889999999998654433 33322 367799999884
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.43 E-value=0.013 Score=51.62 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=29.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.|+=.++.|+.|+|||...+--+.... ..+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~---------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ---------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH---------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH---------HCCCeEEEEeecCC
Confidence 356678899999999986655544443 34778999998764
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.018 Score=53.52 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
+.++++.||+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 468999999999999864 44445543
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.33 E-value=0.022 Score=53.73 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999854
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.021 Score=51.74 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.+..++.+.+.-. .+.+ .+.+.. +..++.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567887767777777765311 1111 112222 134578999999999999854
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.17 E-value=0.059 Score=48.52 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999864
No 120
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.17 E-value=0.0094 Score=61.37 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....++|+|+.|+..+.++.+++.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 479999999975 3678999999999999975544444443211 124569999999999999999998864
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.13 E-value=0.01 Score=51.75 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=27.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
.|.=.++.|+.|+|||...+.- +..... .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEeccC
Confidence 3556789999999999755444 344332 3567999999764
No 122
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.05 E-value=0.015 Score=60.33 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 120 SKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 120 ~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+... .....++|+|+.|+..|.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-----~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 357899999999999997544444444321 112356999999999999999888775
No 123
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.97 E-value=0.044 Score=50.19 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999865
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.95 E-value=0.024 Score=48.59 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
|+=.++.|+.|+|||.-. +-.+..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHH--------cCCeEEEEccc
Confidence 556788999999999643 333333322 25679999887
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.92 E-value=0.019 Score=53.64 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHHHHHHH
Q 016712 122 LFPIQKAVLEPAM----QGR---DMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 122 ~~~~Q~~~i~~i~----~g~---d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
.+|+|.+++..+. +|+ .+++.||.|+|||..+ ..+.+.+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHH
Confidence 4688888776543 443 3899999999999865 3333444
No 126
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.81 E-value=0.052 Score=43.93 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.3
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..+.++++.|++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45679999999999999865
No 127
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.77 E-value=0.017 Score=63.56 Aligned_cols=107 Identities=20% Similarity=0.108 Sum_probs=68.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC-
Q 016712 121 KLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS- 199 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~- 199 (384)
++|+-|.++|..- +++++|.|..|||||.+.+--++..+.... ......++|++++|+..+.++.+++......
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~---~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE---NPIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS---SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC---CCCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5899999999753 789999999999999976555555553210 0113457999999999999999888774310
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHH
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIK 237 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~ 237 (384)
+.. .. ......+.+..-..+-|+|-..+...+.
T Consensus 85 ~~~----~~-~~~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 85 LVQ----RP-GSLHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp HHH----ST-TCHHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred hhc----Cc-chHHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 000 00 0011112222224577888877765553
No 128
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.70 E-value=0.02 Score=58.40 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=73.5
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCC
Q 016712 121 KLFPIQKAVLEPAMQ--GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAP 198 (384)
Q Consensus 121 ~~~~~Q~~~i~~i~~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~ 198 (384)
.+|..|.+++..+.. ..-.++.|+-|.|||.+..+.+-... ..++|.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~------------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA------------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS------------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH------------hCcEEECCCHHHHHHHHHHhhC---
Confidence 579999999998876 33579999999999976555543321 2369999998876644433221
Q ss_pred CCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCc
Q 016712 199 SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQ 278 (384)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q 278 (384)
.|-+..|+.+.. ...+.++||||||=.+. .+.+..++. ...
T Consensus 240 ------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~ 280 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFP 280 (671)
T ss_dssp ------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSS
T ss_pred ------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCC
Confidence 122334544321 23468999999998653 334444544 344
Q ss_pred EEEEEccCCh
Q 016712 279 SMMFSATMPP 288 (384)
Q Consensus 279 ~l~~SAT~~~ 288 (384)
.++||.|...
T Consensus 281 ~v~~~tTv~G 290 (671)
T 2zpa_A 281 RTLLTTTVQG 290 (671)
T ss_dssp EEEEEEEBSS
T ss_pred eEEEEecCCc
Confidence 6788888753
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.64 E-value=0.051 Score=46.42 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999854
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.078 Score=49.74 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999854
No 131
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.56 E-value=0.086 Score=51.13 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=64.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEe--cCHHHHHHHHHHHHHhCCCCceEEEECCCChHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLA--PTRELAKQVEKEFHESAPSLDTICVYGGTPISHQ 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~--Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (384)
.-++++|++|+|||....--+ ..+. ..|.+++++. |.+.-+.++...+.... ++++.....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~--------~~G~kVllv~~D~~R~aa~eqL~~~~~~~-gvpv~~~~~~~d---- 166 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQ--------KRGYKVGVVCSDTWRPGAYHQLRQLLDRY-HIEVFGNPQEKD---- 166 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHH--------TTTCCEEEEECCCSSTHHHHHHHHHHGGG-TCEEECCTTCCC----
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHH--------HCCCeEEEEeCCCcchhHHHHHHHHHHhc-CCcEEecCCCCC----
Confidence 357889999999998653222 2232 2355677766 44554544444444432 233221111111
Q ss_pred HHHHhcCCCEEEECchhHH-HHHHccCCCCCCccEEEEeCcccccCC-ChHHHHHHHHHHCCCCCcEEEEEccCChhHHH
Q 016712 215 MRALDYGVDAVVGTPGRVI-DLIKRNALNLSEVQFVVLDEADQMLSV-GFAEDVEVILERLPQNRQSMMFSATMPPWIRS 292 (384)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~-~~l~~~~~~~~~l~~vViDEah~~~~~-~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~ 292 (384)
|..+. +.+... .-.+.++||||.+=+.... ....++..+.....++.-++++.||.......
T Consensus 167 --------------p~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 167 --------------AIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp --------------HHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred --------------HHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 11111 111100 0123567777777543321 23344555555555555566777776555555
Q ss_pred HHHHhc
Q 016712 293 LTNKYL 298 (384)
Q Consensus 293 ~~~~~l 298 (384)
.+..|.
T Consensus 231 ~a~~f~ 236 (443)
T 3dm5_A 231 QALAFK 236 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.53 E-value=0.14 Score=45.31 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 99 LDISKLDISQDIVAALARR--GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..|+++.-.+.+.+.+.+. .+..+..+... .+...+.+++.||+|+|||..+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 4566665555666666542 11111111111 1123467999999999999854
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.027 Score=53.18 Aligned_cols=17 Identities=35% Similarity=0.237 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999854
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.48 E-value=0.053 Score=45.08 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999854
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.47 E-value=0.018 Score=53.33 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+.++|||||+|.+........+..+++..+.++++|+.|-
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 46789999999998622234445555555555666666443
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.05 Score=49.96 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+-.+|||||+|.+... ....+..+++..+.++.+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987643 34445556666555666665443
No 137
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.18 Score=48.27 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=34.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARRG---ISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++.+=-+...+.|.+.= +..|--++... +...+.+|+.||+|+|||+.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 45678999876677777777641 11111121111 123478999999999999954
No 138
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.34 E-value=0.048 Score=50.40 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999864
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.34 E-value=0.38 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
...+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999854
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.32 E-value=0.032 Score=52.73 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999854
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.27 E-value=0.14 Score=44.16 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999854
No 142
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.22 E-value=0.045 Score=46.97 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=72.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH-HHHHHHHHHHHhCCCCceEEEECCCChHH-H
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE-LAKQVEKEFHESAPSLDTICVYGGTPISH-Q 214 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~-La~q~~~~~~~~~~~~~~~~~~g~~~~~~-~ 214 (384)
..+++.+++|.|||.+++--++..+ +.|.+|+|+.=.+. .-.--.+.+..+. +.......+..... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---------g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---------GHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---------HTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---------HCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCC
Confidence 4799999999999999877777776 34788998843331 0000011223331 22111111110000 0
Q ss_pred -HHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCCh--HHHHHHHHHHCCCCCcEEEEEccCChhHH
Q 016712 215 -MRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF--AEDVEVILERLPQNRQSMMFSATMPPWIR 291 (384)
Q Consensus 215 -~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~--~~~~~~il~~l~~~~q~l~~SAT~~~~~~ 291 (384)
...... . ...+.... ..+.-.++++||+||+-..+..++ ..++..++...+...-+|+.+--.|+++.
T Consensus 98 ~~~~~~~-a-------~~~l~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 98 READTAA-C-------MAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHHHHH-H-------HHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred cHHHHHH-H-------HHHHHHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 000000 0 11111111 122236789999999976554442 34566677776666767776666777666
Q ss_pred HHHH
Q 016712 292 SLTN 295 (384)
Q Consensus 292 ~~~~ 295 (384)
+++.
T Consensus 169 e~AD 172 (196)
T 1g5t_A 169 DLAD 172 (196)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5543
No 143
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.10 E-value=0.047 Score=53.19 Aligned_cols=139 Identities=17% Similarity=0.070 Sum_probs=66.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEE-EECCCChHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTIC-VYGGTPISHQ 214 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~-~~g~~~~~~~ 214 (384)
|.-+++.|++|+|||... +-+...+.. ..+..++|+.-- .-..|+..++.....++...- ..|.....+.
T Consensus 200 G~l~ii~G~pg~GKT~la-l~ia~~~a~-------~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~ 270 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFA-LTIAQNAAL-------KEGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDF 270 (444)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hCCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHH
Confidence 346899999999999854 333333322 124457777643 223344444332111111100 1122221111
Q ss_pred H------HHHhcCCCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCC-------ChHHHHHHHHHHCC--
Q 016712 215 M------RALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSV-------GFAEDVEVILERLP-- 274 (384)
Q Consensus 215 ~------~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~-------~~~~~~~~il~~l~-- 274 (384)
. ..+. ...+.|- |++.+...+..-.. -.++++||||..+.+... +....+..+.+.+.
T Consensus 271 ~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 271 SRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 1122 2356553 33444333322110 125889999999988753 12233444444332
Q ss_pred ---CCCcEEEEEcc
Q 016712 275 ---QNRQSMMFSAT 285 (384)
Q Consensus 275 ---~~~q~l~~SAT 285 (384)
.++.++++|-.
T Consensus 349 Ake~~v~vi~lsql 362 (444)
T 2q6t_A 349 ARELGIPIIALSQL 362 (444)
T ss_dssp HHHHTSCEEEEEEC
T ss_pred HHHhCCeEEEEecC
Confidence 26778887753
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.93 E-value=0.19 Score=46.39 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-----hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-----~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.....+.|.+.-. .|.. .+.+ ...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887777777777765311 1110 1111 12357999999999999864
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.19 Score=46.69 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=26.5
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+.++|+|||+|.+... ....+..+++..+.+..+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999987643 34455566666665666666543
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.84 E-value=0.069 Score=52.13 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceE-EEECCCChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTI-CVYGGTPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~-~~~g~~~~~~ 213 (384)
.|.-+++.|++|+|||...+- +...+.. ..+..++|+..--. ..|+..++.....++... +..|.....+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~-ia~~~~~-------~~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN-IAQNVAT-------KTNENVAIFSLEMS-AQQLVMRMLCAEGNINAQNLRTGKLTPED 272 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH-HHHHHHH-------HSSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHHHHTSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHHH-------hCCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCHHH
Confidence 345689999999999985433 3333322 12445788764322 234444432110011100 0112122111
Q ss_pred HH------HHHhcCCCEEEEC-----chhHHHHHHccCCCCCCccEEEEeCcccccCCC-----hHHHHHHHHHHCC---
Q 016712 214 QM------RALDYGVDAVVGT-----PGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLP--- 274 (384)
Q Consensus 214 ~~------~~~~~~~~IlV~T-----p~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~~~~~~~il~~l~--- 274 (384)
.. ..+. ..++.+-. .+.+...+..-. .-.++++||||+.+.+.... ....+..+++.+.
T Consensus 273 ~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA 350 (454)
T 2r6a_A 273 WGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA 350 (454)
T ss_dssp HHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 1111 24566543 333433332211 12368999999999887432 2334444443332
Q ss_pred --CCCcEEEEEc
Q 016712 275 --QNRQSMMFSA 284 (384)
Q Consensus 275 --~~~q~l~~SA 284 (384)
.++.++++|-
T Consensus 351 ke~~i~vi~~sq 362 (454)
T 2r6a_A 351 RELEVPVIALSQ 362 (454)
T ss_dssp HHHTCCEEEEEC
T ss_pred HHhCCeEEEEec
Confidence 2677887765
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.77 E-value=0.19 Score=46.76 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=26.9
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...+++||||+|.+... ....+..+++..+.+..+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987643 3445666677666666666554
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.3 Score=47.52 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEP--AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+..+|++.+=-+.+.+.|.+.=. .|.. -+.+.. +...+.+|+.||+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 3456789999877788888876411 1111 111111 123478999999999999854
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.66 E-value=0.013 Score=54.97 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=66.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECCCChHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGGTPISH 213 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~~~~~~ 213 (384)
.|.-+++.|++|+|||..+ +-+...+.. .+..++|++.- .-..|+..++.....++...-+ .|..+. .
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~--------~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~~~~l~~g~Ls~-~ 113 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALN--------DDRGVAVFSLE-MSAEQLALRALSDLTSINMHDLESGRLDD-D 113 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH--------TTCEEEEEESS-SCHHHHHHHHHHHHHCCCHHHHHHTCCCH-H
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEeCC-CCHHHHHHHHHHHhhCCCHHHHhcCCCCH-H
Confidence 3456899999999999854 333333322 25567777643 3344554444322111211101 122221 1
Q ss_pred HHHHHh------cCCCEEE-ECc----hhHHHHHHccCCCCCCccEEEEeCcccccCCCh----HHHHHHHHHHCC----
Q 016712 214 QMRALD------YGVDAVV-GTP----GRVIDLIKRNALNLSEVQFVVLDEADQMLSVGF----AEDVEVILERLP---- 274 (384)
Q Consensus 214 ~~~~~~------~~~~IlV-~Tp----~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~----~~~~~~il~~l~---- 274 (384)
+...+. ....+.| -+| ..+...+.+-.-...++++||||-.+.|...+. ..++..+.+.|.
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAk 193 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAR 193 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 111111 1235555 333 333333322111112689999999998764211 112333333221
Q ss_pred -CCCcEEEEEcc
Q 016712 275 -QNRQSMMFSAT 285 (384)
Q Consensus 275 -~~~q~l~~SAT 285 (384)
-++.++++|-.
T Consensus 194 el~vpVi~lsQl 205 (338)
T 4a1f_A 194 ELEIPIIALVQL 205 (338)
T ss_dssp HHTSCEEEEEEC
T ss_pred HcCCeEEEEEec
Confidence 26778887764
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.61 E-value=0.34 Score=42.27 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
.|.-+++.|++|+|||...+--+.... . .+..++|+.-. .-..++.+.+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~--------~~~~v~~~~~e-~~~~~~~~~~~~~g 74 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K--------MGEPGIYVALE-EHPVQVRQNMAQFG 74 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h--------cCCeEEEEEcc-CCHHHHHHHHHHcC
Confidence 456789999999999986433333322 2 24457777643 33456666665443
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.52 E-value=0.16 Score=46.40 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+-.+|||||+|.+... ....+..+++..+.+..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4679999999987643 2334455556555566666655
No 152
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.58 Score=45.05 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+..+|++.+=-+...+.|.+. .+..|--++..-+ .-.+.+|+.||+|+|||+.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 45667899987556666666653 2223333332221 22378999999999999954
No 153
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.23 E-value=0.2 Score=46.29 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECC------
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGG------ 208 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~------ 208 (384)
.|.-+++.|++|+|||...+--+.... . .+..++|++-- .-..|+..++.....++...-+..+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~--------~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-D--------NDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFAS 136 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-T--------TTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--------cCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCH
Confidence 345689999999999975433333332 1 23567777643 3445555555443222221100011
Q ss_pred CChHHH---HHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCcc--EEEEeCcccccCC----ChHHHHHHHHHHCC
Q 016712 209 TPISHQ---MRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQ--FVVLDEADQMLSV----GFAEDVEVILERLP 274 (384)
Q Consensus 209 ~~~~~~---~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~--~vViDEah~~~~~----~~~~~~~~il~~l~ 274 (384)
...... ...+. ...+.|- |++.+...+..-. .-..++ +||||-.+.+... +....+..+++.|.
T Consensus 137 ~~~~~l~~a~~~l~-~~~i~i~d~~~~~~~~i~~~i~~l~-~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk 214 (315)
T 3bh0_A 137 EDWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLK 214 (315)
T ss_dssp SCHHHHHHHHHHHH-TSCEEEECCSCCBHHHHHHHHHHHH-HTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHH
Confidence 111110 11111 2456554 3344443333211 112578 9999999987632 22344444444432
Q ss_pred -----CCCcEEEEEc
Q 016712 275 -----QNRQSMMFSA 284 (384)
Q Consensus 275 -----~~~q~l~~SA 284 (384)
.++.++++|-
T Consensus 215 ~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 215 KMARELDVVVIALSQ 229 (315)
T ss_dssp HHHHHHTCEEEEEEC
T ss_pred HHHHHhCCeEEEEee
Confidence 2666777655
No 154
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.15 E-value=0.3 Score=46.44 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999854
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.36 Score=46.59 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=34.1
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+...|++.+=-+...+.|.+. .+..|--++..- +...+.+|+.||+|+|||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 34567899987666777666653 111121122111 122367999999999999954
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.03 E-value=0.52 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999854
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.99 E-value=0.17 Score=50.22 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCccEEEEeCcccccCC--ChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSV--GFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~--~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
..-.+|||||+|.+... +....+..+++. .+..+|+.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 34568999999998753 233455555554 3566888887753
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.92 E-value=0.2 Score=46.46 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999854
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.83 E-value=0.12 Score=50.39 Aligned_cols=17 Identities=41% Similarity=0.388 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999854
No 160
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.81 E-value=0.23 Score=46.20 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
.+.+++|+||+|. ++......+..+++..+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4677999999998 444455667777777766666666665543
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.72 E-value=0.29 Score=44.79 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999854
No 162
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.68 E-value=0.4 Score=44.79 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||+|+|||..+
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 57999999999999864
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.67 E-value=0.43 Score=41.07 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999754
No 164
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.64 E-value=0.76 Score=38.92 Aligned_cols=73 Identities=18% Similarity=0.349 Sum_probs=55.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+. ..+++.++++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~~ 125 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG--VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQH 125 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCCE
Confidence 4579999999999999999998874 6788899987765544333 22 48999999 4444 4567888998
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.=+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88743
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.63 E-value=0.094 Score=47.91 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=25.7
Q ss_pred CCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 99 LDISKLDISQDIVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 99 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..|+++.-.+..++.+.+.- .. -...++++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHH
Confidence 34555544566666665421 10 11236999999999999854
No 166
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.4 Score=46.38 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++.+=-+...+.|.+. .+..|--++... +.-.+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4567899987666777776653 111111111111 122478999999999999964
No 167
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.59 E-value=0.11 Score=47.43 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.5
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..|.-+++.|++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35677899999999999854
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.58 E-value=0.83 Score=42.78 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-----hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPA-----MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i-----~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-.....+.|.+.=. .|. -.+.+ ...+.+++.||+|+|||..+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 44667777655556666654210 000 00111 12357999999999999864
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.44 E-value=0.14 Score=48.64 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=14.2
Q ss_pred CcEEE--EccCCCchhHHH
Q 016712 137 RDMIG--RARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li--~a~TGsGKT~~~ 153 (384)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999854
No 170
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.29 E-value=0.56 Score=40.79 Aligned_cols=21 Identities=24% Similarity=0.001 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~l 155 (384)
.|.-+++.||+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456789999999999986533
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.10 E-value=0.58 Score=42.98 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=24.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+.+++||||+|.|.... ...+.+.++.-+++.-+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 4567899999999986542 233444455444455555544
No 172
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.06 E-value=0.48 Score=38.84 Aligned_cols=74 Identities=15% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG--YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-ARGIDIENISL 106 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TTTCCCSCCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hcCCchhcCCE
Confidence 4579999999999999999998874 6788889987765544333 33 47899999 332 34677888998
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887544
No 173
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.04 E-value=0.42 Score=46.95 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
.|....+.|-||||||++. ..++.. .+..+|||+|+...|.|+++.++.+++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER-----------HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 4567889999999999843 222221 1334899999999999999999998764
No 174
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.74 E-value=0.59 Score=44.13 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|.-+++.|++|+|||..+ +.++..+.. .+..++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~~--------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQK--------AGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHHH--------CCCeEEEEECCC
Confidence 467899999999999855 444433322 244678877543
No 175
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.71 E-value=0.54 Score=43.84 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
...-.+|||||+|.+... ....+...++..+.++.+|+.|
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 345679999999987543 3334444555444444455444
No 176
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.65 E-value=0.72 Score=38.22 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++..+..+.+.+.+.+ +.+..++|+.+..+....+ .. ..+|+|+|. .+ ...+++.+++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~ 104 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDG--HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVT 104 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCC
Confidence 35689999999999999999998864 6788889988766554333 33 489999992 22 3467788999
Q ss_pred EEEEeCc
Q 016712 248 FVVLDEA 254 (384)
Q Consensus 248 ~vViDEa 254 (384)
+||.-+.
T Consensus 105 ~Vi~~d~ 111 (175)
T 2rb4_A 105 IVVNFDL 111 (175)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8885443
No 177
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.51 E-value=0.62 Score=38.20 Aligned_cols=74 Identities=12% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G~d~~~~~~ 101 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-ARGIDVQQVSL 101 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TTTCCCCSCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hcCCCcccCCE
Confidence 5679999999999999999998864 6788889987765544333 23 47999999 222 34667888998
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.-+.
T Consensus 102 Vi~~~~ 107 (165)
T 1fuk_A 102 VINYDL 107 (165)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887544
No 178
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.46 E-value=0.14 Score=49.91 Aligned_cols=138 Identities=10% Similarity=0.054 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEE-ECC-----C
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICV-YGG-----T 209 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~-~g~-----~ 209 (384)
|.-+++.|++|+|||... +-+...+.. .+..++|++-- .-..|+..++.....++...-+ .|. .
T Consensus 197 G~liiIaG~pG~GKTtla-l~ia~~~a~--------~g~~vl~fSlE-ms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~ 266 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFA-LKQAKNMSD--------NDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASE 266 (444)
T ss_dssp SCEEEEEECSSSSHHHHH-HHHHHHHHH--------TTCEEEEECSS-SCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHH--------cCCEEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence 356899999999999854 333333322 14567777643 2233444443332112211000 111 1
Q ss_pred ChHH---HHHHHhcCCCEEEE-----CchhHHHHHHccCCCCCCcc--EEEEeCcccccCC----ChHHHHHHHHHHCC-
Q 016712 210 PISH---QMRALDYGVDAVVG-----TPGRVIDLIKRNALNLSEVQ--FVVLDEADQMLSV----GFAEDVEVILERLP- 274 (384)
Q Consensus 210 ~~~~---~~~~~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~l~--~vViDEah~~~~~----~~~~~~~~il~~l~- 274 (384)
.... -...+. ...+.|- |++.+...+.+-.. -.+++ +||||-.+.|... +....+..+.+.|.
T Consensus 267 ~~~~l~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~ 344 (444)
T 3bgw_A 267 DWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKK 344 (444)
T ss_dssp CHHHHHHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHH
Confidence 1111 111222 2456553 33444443332110 12578 9999999987633 23344554444432
Q ss_pred ----CCCcEEEEEcc
Q 016712 275 ----QNRQSMMFSAT 285 (384)
Q Consensus 275 ----~~~q~l~~SAT 285 (384)
.++.++++|-.
T Consensus 345 lAke~~v~vi~lsql 359 (444)
T 3bgw_A 345 MARELDVVVIALSQL 359 (444)
T ss_dssp HHHHHTCEEEEEEEC
T ss_pred HHHHhCCeEEEEecC
Confidence 26778887763
No 179
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.26 E-value=0.26 Score=48.51 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=27.5
Q ss_pred cEEEEeCcccccCCC----------hHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 247 QFVVLDEADQMLSVG----------FAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 247 ~~vViDEah~~~~~~----------~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+|+|||+|.+.... ....+...+..+.....++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 579999999886421 223344445555666778888888654
No 180
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.94 E-value=0.64 Score=40.06 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=54.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT--CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccCcE
Confidence 5679999999999999999998874 6788899998766654443 33 47899999 333 34677888998
Q ss_pred EEE
Q 016712 249 VVL 251 (384)
Q Consensus 249 vVi 251 (384)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 181
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.85 E-value=0.57 Score=43.30 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=52.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA 217 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (384)
-+++.||+|+|||...+-.+.... .. ..+..++|+..-..+-.. .+++++-+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~------g~g~~vlyId~E~s~~~~---ra~~lGvd~d---------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQ------YPDAVCLFYDSEFGITPA---YLRSMGVDPE---------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HH------CTTCEEEEEESSCCCCHH---HHHHTTCCGG----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hc------CCCceEEEEeccchhhHH---HHHHhCCCHH----------------
Confidence 578999999999986544333332 20 235679998876555332 3555543222
Q ss_pred HhcCCCEEEECchhHHHH-H---Hc-cCCCCCCccEEEEeCccccc
Q 016712 218 LDYGVDAVVGTPGRVIDL-I---KR-NALNLSEVQFVVLDEADQML 258 (384)
Q Consensus 218 ~~~~~~IlV~Tp~~l~~~-l---~~-~~~~~~~l~~vViDEah~~~ 258 (384)
++++..|..+.+. + .. ..+.-..+++||||-+..+.
T Consensus 84 -----~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 3444444433332 1 11 11233468999999999886
No 182
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.78 E-value=1.4 Score=43.80 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
.+.++||.++++.-+..+++.+.+.++ ++.+..++|+....+....+ .. ..+|+|+| +.+ ...+++.++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~GiDip~v 411 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFPNV 411 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCTTC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chh-hcCCCcccC
Confidence 467899999999999999999998754 68888899988766544433 22 48999999 333 357788999
Q ss_pred cEEEEeCcc
Q 016712 247 QFVVLDEAD 255 (384)
Q Consensus 247 ~~vViDEah 255 (384)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 999876544
No 183
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.61 E-value=0.45 Score=54.34 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHhC------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 130 LEPAMQ------GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 130 i~~i~~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
++.++. ++++++.||+|+|||..+.-.+.... ..|.+++|+..-..+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~---------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---------HcCCcEEEEEccccc
Confidence 666666 57999999999999997644444333 246778888866443
No 184
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.37 E-value=2.1 Score=35.33 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=56.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+.+.+...+ +.+..++|+.+..+....+ .+ ..+|+|+|. . ....+++.+++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~~ 101 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 101 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC--CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhCC
Confidence 35679999999999999999998864 6788889987765544333 33 489999993 2 23456778888
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||.-+..
T Consensus 102 ~Vi~~d~p 109 (172)
T 1t5i_A 102 IAFNYDMP 109 (172)
T ss_dssp EEEESSCC
T ss_pred EEEEECCC
Confidence 88865443
No 185
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.28 E-value=1.7 Score=38.84 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=18.7
Q ss_pred HhCCCcEEEEccCCCchhHHHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~~l 155 (384)
+..|.-+++.||+|+|||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45678899999999999986543
No 186
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.79 E-value=3.1 Score=37.80 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++-++++|++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3557889999999999864
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.65 E-value=1.1 Score=41.27 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=35.2
Q ss_pred HHHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH-HHHHHHHHHHh
Q 016712 129 VLEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (384)
Q Consensus 129 ~i~~i~~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L-a~q~~~~~~~~ 196 (384)
.++.++. |.-+++.|++|+|||...+--+.... .... ..+.+..++|+.-...+ ..++...++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~-~~~~--~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ-LPPE--KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT-SCGG--GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh-cccc--cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3555554 35789999999999985533333211 1000 00124578888754432 34455455544
No 188
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.60 E-value=9.7 Score=34.57 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=22.6
Q ss_pred cEEEEeCcccccC---CChHHHHHHHHHHCCCCCcEEEEE
Q 016712 247 QFVVLDEADQMLS---VGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 247 ~~vViDEah~~~~---~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
-+|||||+|.+.. ..+...+..+.... .+..+|+.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 4799999999864 34555666666554 245455443
No 189
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.52 E-value=0.48 Score=51.69 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=63.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.+++|++++++-+..+++.+++.+++.++..++|+.+..+....+ .+ ..+|+|+| +. ....+++.+++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT-----~v-~e~GiDip~v~ 884 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TI-IETGIDIPTAN 884 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEES-----ST-TGGGSCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEC-----Cc-ceeeecccCCc
Confidence 47789999999999999999999998889999999988765544333 33 58999999 33 34567899999
Q ss_pred EEEEeCccc
Q 016712 248 FVVLDEADQ 256 (384)
Q Consensus 248 ~vViDEah~ 256 (384)
+||+..++.
T Consensus 885 ~VIi~~~~~ 893 (1151)
T 2eyq_A 885 TIIIERADH 893 (1151)
T ss_dssp EEEETTTTS
T ss_pred EEEEeCCCC
Confidence 999887765
No 190
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.32 E-value=2.3 Score=42.48 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCC-CCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAP-SLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEV 246 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l 246 (384)
.+.++||.++|+.-+..+++.+.+.++ ++.+..++|+....+....+ .. ..+|+|+| +.+ ...+++.++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~GiDip~v 360 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFPNV 360 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCTTC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hcCCCcccC
Confidence 467899999999999999999998754 68888899988765544333 22 47899999 333 356788999
Q ss_pred cEEEEeCcc
Q 016712 247 QFVVLDEAD 255 (384)
Q Consensus 247 ~~vViDEah 255 (384)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 999876654
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.32 E-value=0.27 Score=43.02 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCccEEEEeCcccccC-----CChHHHHHHHHHHCCCCCcEEEEEccCCh
Q 016712 244 SEVQFVVLDEADQMLS-----VGFAEDVEVILERLPQNRQSMMFSATMPP 288 (384)
Q Consensus 244 ~~l~~vViDEah~~~~-----~~~~~~~~~il~~l~~~~q~l~~SAT~~~ 288 (384)
.+.+++|+||.-.+++ ......+..+++.+...--+++++.....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3578899999987765 33445566666666432334455544433
No 192
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.28 E-value=0.25 Score=39.69 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
...+.++++.|++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345679999999999999853
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.01 E-value=0.82 Score=42.83 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=25.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.|.-+++.|++|+|||...+--+.... . .+..++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~--------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-A--------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h--------CCCeEEEEECC
Confidence 346789999999999986544333332 2 24568887754
No 194
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.92 E-value=0.69 Score=38.89 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=46.1
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHH---HHHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQM---RALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+.+.++..+ +.+..++|+.+..+.. ..+.. ..+|+|+| +.+. .++++.+++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT--CCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC--CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhh-cCCCcccCC
Confidence 46679999999999999999998864 6788888876544332 23333 47999999 3332 356788888
Q ss_pred EEEEe
Q 016712 248 FVVLD 252 (384)
Q Consensus 248 ~vViD 252 (384)
+||.=
T Consensus 117 ~VI~~ 121 (185)
T 2jgn_A 117 HVINF 121 (185)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88763
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.92 E-value=0.6 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 196
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.65 E-value=0.65 Score=39.16 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCC
Q 016712 122 LFPIQKAVLEPAMQGR--DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPS 199 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~ 199 (384)
..+-|..++..++... -.++.+.-|++|+-..+--++.... ..|.++.+|+|+..-.....+....-.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--------~~Gr~V~vLAp~~~s~~~l~~~~~l~~-- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--------EQGREVQIIAADRRSQMNMKQDERLSG-- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--------HTTCCEEEECSTTHHHHHHSCTTTCSS--
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--------hcCeEEEEEcCchHHHHHHHhhcCcCc--
Confidence 3467889998886554 4677899999999875433333322 257889999999876654332222111
Q ss_pred CceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcccccCCChHHHHHHHHHH-CCCCCc
Q 016712 200 LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-LPQNRQ 278 (384)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~il~~-l~~~~q 278 (384)
+++ +. +.+......|..=+.+|||||-.|. ..++..++.. ...+.|
T Consensus 105 -----------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 -----------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQ 151 (189)
T ss_dssp -----------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCC
T ss_pred -----------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCE
Confidence 000 00 1222233333444589999999873 3455555554 235788
Q ss_pred EEEEEcc
Q 016712 279 SMMFSAT 285 (384)
Q Consensus 279 ~l~~SAT 285 (384)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8887544
No 197
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.59 E-value=1.9 Score=40.67 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+| +.+. ..+++.+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCC--CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccCC
Confidence 46789999999999999999998864 6788889988765544333 22 47999999 5444 467888999
Q ss_pred EEEE
Q 016712 248 FVVL 251 (384)
Q Consensus 248 ~vVi 251 (384)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 198
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.26 E-value=0.52 Score=44.33 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL 185 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L 185 (384)
|.-+++.||+|+|||... +.++..+.. .+..++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccccc
Confidence 456899999999999854 444443322 24568888765433
No 199
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=89.18 E-value=0.24 Score=44.67 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHh-hcceEEEecCCCChhhhhchhhhhhcC-Cccc
Q 016712 344 MQTAWLMLW-LKVIIVSLCMGISHKARGRGPFQLSEM-DVSI 383 (384)
Q Consensus 344 ~~~~~~l~~-~~~~v~~~hg~m~~~eR~~il~~F~~~-~~~V 383 (384)
..+...|.. .|+.+..+||+++.++|++++++|+++ +++|
T Consensus 126 ~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v 167 (271)
T 1z5z_A 126 KIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKF 167 (271)
T ss_dssp HHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCE
Confidence 344455555 389999999999999999999999999 6663
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.05 E-value=3.9 Score=37.79 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=38.1
Q ss_pred CccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHhc
Q 016712 245 EVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKYL 298 (384)
Q Consensus 245 ~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~l 298 (384)
+.+++++|.+-+.- +.....++..+.+.+.++..++++.++......+.+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34577888877543 2336666777777777778888999988877777777664
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.99 E-value=2.7 Score=43.59 Aligned_cols=16 Identities=38% Similarity=0.281 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999865
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.76 E-value=0.82 Score=48.22 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.||+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999854
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.62 E-value=3.1 Score=37.75 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCccEEEEeCccccc-CCChHHHHHHHHHHCCCCCcEEEEEccCChhHHHHHHHh
Q 016712 244 SEVQFVVLDEADQML-SVGFAEDVEVILERLPQNRQSMMFSATMPPWIRSLTNKY 297 (384)
Q Consensus 244 ~~l~~vViDEah~~~-~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~~~~~~~~~ 297 (384)
.+.++|||||.-.+. +......+..+...+.+..-++.+.++-.....+.++.+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~ 233 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHH
Confidence 356899999995433 222234444555554444445667777554444444433
No 204
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.47 E-value=1.4 Score=41.44 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.|.-+++.|++|+|||..++--+.... . .+..++|+.--
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~--------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R--------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H--------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEeCC
Confidence 356789999999999996644333332 2 24568888763
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.26 E-value=6.5 Score=35.86 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345789999999999854
No 206
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.07 E-value=1.5 Score=40.12 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=55.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..+....+ .. ..+|+|+| +.+ ...+++.++++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccceeE
Confidence 567999999999999999998876 47888899998766554443 23 48999999 333 34677889998
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.=+
T Consensus 100 VI~~d 104 (300)
T 3i32_A 100 VVHYR 104 (300)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 87533
No 207
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.90 E-value=3.2 Score=35.38 Aligned_cols=19 Identities=21% Similarity=-0.018 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999853
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.82 E-value=0.23 Score=48.07 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCCCCCccCCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 95 KDEGLDISKLDISQDIVAALARR---GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 95 ~~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
..+..+|++.+--+...+.|.+. .+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45667899998888888887753 2222333332211 22478999999999999854
No 209
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.39 E-value=2.1 Score=40.17 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+++.+.+.+ ..+..++|+.+..+....+ .+ ..+|+|+| +.+ ..++++.++++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEG--HQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-ARGIDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TSSCCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC--CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-ccCCCccCCCE
Confidence 5689999999999999999999874 6778889988766554433 33 47899999 333 45678899999
Q ss_pred EEEeCc
Q 016712 249 VVLDEA 254 (384)
Q Consensus 249 vViDEa 254 (384)
||.-..
T Consensus 338 Vi~~~~ 343 (412)
T 3fht_A 338 VINFDL 343 (412)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 885433
No 210
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=87.29 E-value=10 Score=34.91 Aligned_cols=77 Identities=10% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+++.+ ..+..++|+.+..+....+ .. ..+|+|+| +.+ ..++++.+++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEG--HEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVL-ARGIDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGG-SSSCCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hcCCCcccCC
Confidence 45789999999999999999998874 6778888887765544333 33 47899999 333 4567889999
Q ss_pred EEEEeCccc
Q 016712 248 FVVLDEADQ 256 (384)
Q Consensus 248 ~vViDEah~ 256 (384)
+||.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998766654
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.13 E-value=8 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|+|||...
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999854
No 212
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.01 E-value=0.8 Score=44.05 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
..++++.|+||+|||... ..++..+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 468999999999999964 44444443
No 213
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.79 E-value=4.6 Score=38.46 Aligned_cols=43 Identities=16% Similarity=0.009 Sum_probs=24.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecC
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPT 182 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt 182 (384)
.-+.+.||+|+|||.....-++..+.. ......+..++|+.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCC
Confidence 468899999999998553222222211 0001134568887643
No 214
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.60 E-value=1 Score=42.12 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999954
No 215
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=86.50 E-value=27 Score=35.38 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=60.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++|+.-+..+.+.+.+.+ +++..++|+.+..+.... +.. ..+|+||| +.+ ..++++.+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~GlDip~v~ 515 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG--IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-REGLDIPEVS 515 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-STTCCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC--CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hCCcccCCCC
Confidence 36789999999999999999999874 677788887765554444 333 48999999 333 4567889999
Q ss_pred EEEEeCcccc
Q 016712 248 FVVLDEADQM 257 (384)
Q Consensus 248 ~vViDEah~~ 257 (384)
+||+-+++..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999998764
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.46 E-value=2.1 Score=39.23 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhh---ccCCCCC----CEEEEEecCHHH-HHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNE---KHGRGRN----PLCLVLAPTREL-AKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~---~~~~~~~----~~~lvl~Pt~~L-a~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||...+--+......... ......| ..++|+.--..+ ..++.+.++.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 4568999999999998654333321111000 0000112 578888754432 455555555543
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.46 E-value=1.2 Score=50.88 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=35.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCC
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSL 200 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~ 200 (384)
.|.++++.|++|+|||..+.--+.+.+ ..|..++|+. ..++..+++ ...++-++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~---------k~Ge~~~Fit-~ee~~~~L~--a~~~G~dl 1133 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ---------REGKTCAFID-AEHALDPIY--ARKLGVDI 1133 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---------TTTCCEEEEC-TTSCCCHHH--HHHTTCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---------HcCCeEEEEE-ccccHHHHH--HHHcCCCh
Confidence 457899999999999997655555554 2366788876 445555555 34444333
No 218
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.42 E-value=1 Score=44.25 Aligned_cols=50 Identities=6% Similarity=-0.057 Sum_probs=29.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEF 193 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~ 193 (384)
.|.-+++.|++|+|||... +-+...+.. ..+..++|+.-- +-..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~-------~~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGT-------AMGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTT-------TSCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHH-------hcCCcEEEEecc-CCHHHHHHHH
Confidence 3456899999999999854 333333321 114567777643 2344555554
No 219
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.52 E-value=2.1 Score=41.26 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
..++++|++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998653
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.30 E-value=3 Score=43.13 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999864
No 221
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.17 E-value=3.5 Score=38.24 Aligned_cols=64 Identities=8% Similarity=-0.029 Sum_probs=34.5
Q ss_pred HHHHhC-----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHH-HHHHHHHHHHh
Q 016712 130 LEPAMQ-----GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTREL-AKQVEKEFHES 196 (384)
Q Consensus 130 i~~i~~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~L-a~q~~~~~~~~ 196 (384)
++.++. |.-+++.|++|+|||...+--+...... ....+.+..++|+.-...+ ..++...+..+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 556664 3468999999999998553333221110 0001135678888754421 33444444443
No 222
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.13 E-value=2.7 Score=39.09 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+|. . ....+++.+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~~ 320 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 320 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccCC
Confidence 46789999999999999999998864 6778888887765544333 33 479999993 2 23467888999
Q ss_pred EEEEeCcc
Q 016712 248 FVVLDEAD 255 (384)
Q Consensus 248 ~vViDEah 255 (384)
+||.-+..
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99876544
No 223
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.09 E-value=2.6 Score=38.71 Aligned_cols=75 Identities=12% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+++.+ ..+..++|+.+..+....+ .+ ..+|+|+| +.+. ..+++.+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gid~~~~~ 308 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIG--FKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMS-RGIDVNDLN 308 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHH-HHCCCSCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC--CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-cCCCcccCC
Confidence 45679999999999999999999874 6778888887765544333 23 47899999 3332 356788899
Q ss_pred EEEEeCc
Q 016712 248 FVVLDEA 254 (384)
Q Consensus 248 ~vViDEa 254 (384)
+||.-..
T Consensus 309 ~Vi~~~~ 315 (367)
T 1hv8_A 309 CVINYHL 315 (367)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886443
No 224
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.89 E-value=4.5 Score=39.91 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=55.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+..+||.++|+.-+..+++.+++.+ +.+..++|+.+..+..... .+ ..+|+|+|. .+ ...+++.+++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~~GiD~p~v~ 306 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKG--ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-GMGINKPNVR 306 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-CTTTCCTTCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCC--CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hCCCCccCcc
Confidence 35679999999999999999999874 6788889988765543333 22 489999993 22 3467888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.-.
T Consensus 307 ~VI~~~ 312 (523)
T 1oyw_A 307 FVVHFD 312 (523)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988643
No 225
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.89 E-value=2.7 Score=42.29 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+.++++.+.+.+ +.+..++|+.+..+....+ .. ..+|+|+|. .+ ...+++.+++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g--~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p~V~ 337 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLG--IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKPDVR 337 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCSCEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCC--CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCccccc
Confidence 46789999999999999999999864 6788899998766554333 22 479999992 22 3467888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.=.
T Consensus 338 ~VI~~~ 343 (591)
T 2v1x_A 338 FVIHHS 343 (591)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988533
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.80 E-value=5.8 Score=41.35 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+|+.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999954
No 227
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.65 E-value=2.7 Score=45.86 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=50.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL 218 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (384)
.+|.|..|||||.+.+--+...+... ..+.++|+|||... .-++.+++....+...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~------~~~~~il~lVP~q~-TFt~~~rl~~~l~~~~----------------- 59 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA------PFGKPIIFLVPDQM-TFLMEYELAKTPDMGG----------------- 59 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC------TTSSCEEEECCGGG-HHHHHHHHTCCSSCSE-----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC------CCCCcEEEEecCcc-cHHHHHHHHHhhhhcc-----------------
Confidence 47889999999997655554444331 23467999999763 3334444443331100
Q ss_pred hcCCCEEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 219 DYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
..++-|+|-.++...+.+..- ....-++|+.+
T Consensus 60 --~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~ 91 (1166)
T 3u4q_B 60 --MIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTG 91 (1166)
T ss_dssp --ESSEEEECHHHHHHHHHHHHS---CTTSCEECHHH
T ss_pred --eeeeEEecHHHHHHHHHHHcC---CCcccCcCHHH
Confidence 136888888887665543211 12334666654
No 228
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=84.45 E-value=4 Score=38.32 Aligned_cols=73 Identities=10% Similarity=0.236 Sum_probs=55.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
..++||.++++.-+..+.+.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+|. .+ ..++++.++++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v~~ 347 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQVSL 347 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTEEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCC--CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccCCE
Confidence 4589999999999999999998864 6778889987765544333 22 478999993 33 45678889998
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.-.
T Consensus 348 Vi~~~ 352 (410)
T 2j0s_A 348 IINYD 352 (410)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88643
No 229
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=84.10 E-value=9.4 Score=37.08 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HHhc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.+.++++....-+..+.+.+.+.+. ++..++|+.+..+... .+.+ ..+|+|+|+..+ ..++++.++++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~--~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYD--KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKNLHH 419 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCS--SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCSEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCC--CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcccccccCcE
Confidence 45566777778888888888888663 7778888877554433 2233 479999996544 34678999999
Q ss_pred EEEeCccc
Q 016712 249 VVLDEADQ 256 (384)
Q Consensus 249 vViDEah~ 256 (384)
||+.....
T Consensus 420 vi~~~~~~ 427 (510)
T 2oca_A 420 VVLAHGVK 427 (510)
T ss_dssp EEESSCCC
T ss_pred EEEeCCCC
Confidence 99988773
No 230
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.85 E-value=3.9 Score=38.20 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.+ +.+..++|+.+..+....+ .+ ..+|+|+|. . ....+++.+++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~~ 328 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLG--YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVN 328 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT--CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcC--CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCCC
Confidence 35689999999999999999999875 6777888887765544333 33 479999992 2 23467888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.-+
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.74 E-value=7.1 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-+.++|++|+|||..
T Consensus 295 VI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCcccHHHH
Confidence 478999999999985
No 232
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.72 E-value=1.8 Score=41.54 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHHHh--CCCcEEEEccCCCchhHH
Q 016712 125 IQKAVLEPAM--QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 125 ~Q~~~i~~i~--~g~d~li~a~TGsGKT~~ 152 (384)
.+...+..+. .|.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444444443 345689999999999984
No 233
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.66 E-value=1.3 Score=43.65 Aligned_cols=40 Identities=23% Similarity=0.069 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEccCCCchhHH
Q 016712 111 VAALARRGISKLFPIQKAVLEP-AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~li~a~TGsGKT~~ 152 (384)
...|.+.|. +++.+..-+.. +..|..++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556663 45555555543 56788999999999999984
No 234
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.44 E-value=10 Score=37.27 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=22.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEec
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAP 181 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~P 181 (384)
.++++|++|+|||....--+ ..+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~--------~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR--------KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH--------TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh--------CCCeEEEEec
Confidence 57889999999998653322 22221 2455777665
No 235
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.38 E-value=0.32 Score=44.42 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=31.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHH-HHHHH--HhCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEP--AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~--i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-.....+.|.+.-. .|... +.+.. +..++.+++.||+|+|||..+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34567787666677666665310 11100 01111 234578999999999999854
No 236
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=83.25 E-value=1.9 Score=41.54 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.+++|.+|+++-+..+++.+++. ++++..++|.. .......+.+ ..+|+|+| +.+ ...+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT-----~v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKT-FEREYPTIKQKKPDFILAT-----DIA-EMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSS-CC--------CCCSEEEES-----SST-TCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchh-HHHHHhhhcCCCceEEEEC-----Chh-heeeccC-ceEEE
Confidence 568999999999999999999987 47788888843 3333444444 48999999 333 3456777 88877
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.01 E-value=1.3 Score=43.66 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 110 IVAALARRGISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
+...+.. ++..-...-..++-.+..+.++++.||+|+|||..+
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3444443 333333444455556678899999999999999854
No 238
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.00 E-value=4.5 Score=38.72 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=54.0
Q ss_pred EEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 175 LCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 175 ~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
++||.++++.-+..+++.+.+.+ +.+..++|+....+....+ .+ ..+|+|+| +. ....+++.++++||
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~--~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v-~~rGlDi~~v~~VI 373 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SV-ASRGLDIKNIKHVI 373 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT--CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GG-GTSSCCCTTCCEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC--CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hh-hhCCCCcccCCEEE
Confidence 39999999999999999998864 6788899987766554433 33 47999999 33 34577889999888
Q ss_pred Ee
Q 016712 251 LD 252 (384)
Q Consensus 251 iD 252 (384)
.=
T Consensus 374 ~~ 375 (434)
T 2db3_A 374 NY 375 (434)
T ss_dssp ES
T ss_pred EE
Confidence 63
No 239
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.92 E-value=1.5 Score=37.78 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~ 152 (384)
-+.-|..++..+..|.-+.+.||+|+|||..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3556778888888899999999999999984
No 240
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=82.48 E-value=8.6 Score=39.16 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=59.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++|+.-+..+.+.+.+.+ +++..++|+.+..+.... +.. ..+|+||| +.+ ..++++.++++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG--IRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC--CCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCCCE
Confidence 5689999999999999999999875 677778887765554443 333 48999999 333 35678889999
Q ss_pred EEEeCcccc
Q 016712 249 VVLDEADQM 257 (384)
Q Consensus 249 vViDEah~~ 257 (384)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 999888753
No 241
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.30 E-value=1.5 Score=38.01 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=31.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhC
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESA 197 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~ 197 (384)
|.-+++.|++|+|||..++--+.+.... .+..++|++-. +-..++.+.+....
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E-~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE-ERARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc-CCHHHHHHHHHHcC
Confidence 4678999999999998543333333322 13446776533 34556666666544
No 242
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.08 E-value=2.4 Score=38.15 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 243
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=81.59 E-value=8.1 Score=36.56 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=53.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEEC--------CCChHHHHH---HHhc-CCCEEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYG--------GTPISHQMR---ALDY-GVDAVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~---~~~~-~~~IlV~Tp~~l~~~l~~~ 239 (384)
.+.++||.++++.-+..+.+.+... ++.+..++| +.+..+... .+.. ..+|+|+| +.+ ..
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-----~~~-~~ 431 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-----SVG-EE 431 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----GGG-GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-----Ccc-cc
Confidence 3667999999999999999999987 467778888 544433332 2333 47999999 222 34
Q ss_pred CCCCCCccEEEEeCcc
Q 016712 240 ALNLSEVQFVVLDEAD 255 (384)
Q Consensus 240 ~~~~~~l~~vViDEah 255 (384)
++++..+++||+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 6678889988865544
No 244
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.42 E-value=1.6 Score=41.36 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.9
Q ss_pred CccEEEEeCcccccCC---ChHHHHHHHHHHCCC-CCcEEEEEccC
Q 016712 245 EVQFVVLDEADQMLSV---GFAEDVEVILERLPQ-NRQSMMFSATM 286 (384)
Q Consensus 245 ~l~~vViDEah~~~~~---~~~~~~~~il~~l~~-~~q~l~~SAT~ 286 (384)
.-.++|+||+|.++.. .+...+..+++..++ +.-+++.|-++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNV 307 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCH
Confidence 3568899999998852 255667777777655 45555555554
No 245
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.06 E-value=1.5 Score=40.29 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHhCCCcEEEEccCCCchhHHH
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...+..+.++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344556789999999999999854
No 246
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.03 E-value=3.4 Score=36.97 Aligned_cols=42 Identities=21% Similarity=0.112 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCCCcHHH-HHHHHHHhCCC-----cEEEEccCCCchhHHH
Q 016712 109 DIVAALARRGISKLFPIQ-KAVLEPAMQGR-----DMIGRARTGTGKTLAF 153 (384)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q-~~~i~~i~~g~-----d~li~a~TGsGKT~~~ 153 (384)
++.+-|.-.||. |.+ ..++..+++++ .+++.||+|+|||+.+
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 688888878875 555 33355666653 4999999999999965
No 247
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.77 E-value=9.4 Score=35.42 Aligned_cols=18 Identities=22% Similarity=-0.027 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
.-+.+.||+|+|||....
T Consensus 132 ~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998543
No 248
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.54 E-value=0.81 Score=38.76 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=16.7
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..++.++++|++|+|||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 35678999999999999864
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=80.27 E-value=0.8 Score=38.16 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999843
No 250
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.24 E-value=0.94 Score=42.59 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.3
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~ 152 (384)
.+..|..++++||||+|||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 356889999999999999984
No 251
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.17 E-value=3 Score=39.01 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999864
No 252
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.12 E-value=0.84 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.59 E-value=2.9 Score=47.16 Aligned_cols=89 Identities=12% Similarity=0.215 Sum_probs=54.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR 216 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (384)
+-+.+.||.|||||..+ ++++..... .|..++|+.+-.+|-... ++.++-++.
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~--------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQR--------EGKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHH--------TTCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 56899999999999976 444443332 477899999877776543 666664444
Q ss_pred HHhcCCCEEEECchhH---HHHHHccCCCCCCccEEEEeCcccccC
Q 016712 217 ALDYGVDAVVGTPGRV---IDLIKRNALNLSEVQFVVLDEADQMLS 259 (384)
Q Consensus 217 ~~~~~~~IlV~Tp~~l---~~~l~~~~~~~~~l~~vViDEah~~~~ 259 (384)
+++|.-|+.- +..+.. .+.-..+++||||.+-.+..
T Consensus 1485 ------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred ------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 2444455332 111111 01112477899999887764
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.95 E-value=0.87 Score=38.72 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=17.7
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+..|+-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999854
No 255
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.93 E-value=13 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.-+++.|++|+|||...
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345778899999999854
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.48 E-value=0.38 Score=43.44 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQ-KAVLEPA--MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i--~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-.+.+.+.|.+.-. .|+. ...+..+ .-.+.+++.||+|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 34678888777777777775321 2221 2233322 11245999999999999843
No 257
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.20 E-value=0.98 Score=50.05 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
++-+.+|+||+=.-+|..-...+.+.++.+.+++-+|..
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 455688999988777765556666666666555545543
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.10 E-value=0.83 Score=40.85 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.1
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..|.-++++||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677899999999999984
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.83 E-value=1.1 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 260
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.32 E-value=0.45 Score=39.31 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=50.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+....+ .. ..+|+|+| +.+. ..+++.++++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~~~ 101 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAA-RGIDIPDVSH 101 (170)
Confidence 567999999999999999888876 35677788876554433332 22 47899999 3332 3456777777
Q ss_pred EEEeC
Q 016712 249 VVLDE 253 (384)
Q Consensus 249 vViDE 253 (384)
||.-+
T Consensus 102 Vi~~~ 106 (170)
T 2yjt_D 102 VFNFD 106 (170)
Confidence 77644
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=77.65 E-value=1.1 Score=37.90 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.8
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+..|+-++++||+|||||...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 346778899999999999853
No 262
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.47 E-value=3.3 Score=35.61 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHH
Q 016712 108 QDIVAALARRGISKLFPIQKAVLEPAMQG----RDMIGRARTGTGKTLAFGIPILDKI 161 (384)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g----~d~li~a~TGsGKT~~~~lp~l~~l 161 (384)
..+.+-|.=.|+. +... ...+..+.++ +.+++.||+|+|||..+ ..+...+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3566666655653 3333 4555555554 35899999999999854 4444443
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.21 E-value=1.1 Score=37.75 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.2
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..|.-+.+.||+|+|||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3577789999999999984
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=77.20 E-value=1.1 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.050 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++.++++|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999865
No 265
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.09 E-value=0.75 Score=40.53 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=31.6
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.+.....+.+.-.. . -....+..+- -.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 446788877667776666653110 0 0112333221 1245999999999999853
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.00 E-value=2.3 Score=39.87 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.8
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..+..++++||||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455799999999999984
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.91 E-value=0.84 Score=37.78 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=16.9
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..++.+++.|++|+|||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999854
No 268
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=76.69 E-value=4.4 Score=41.41 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=49.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.++||.+|++.-++.+++.+++. ++.+..++|. ........+.+ ..+|+|+| +.+. ..+++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT--TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEEE
Confidence 568999999999999999999887 4778888884 33333334444 47999999 4443 456677 77766
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.65 E-value=1.4 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++.+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999853
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.60 E-value=15 Score=35.29 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHHH
Q 016712 137 RDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~ 154 (384)
+.++++|+.|+|||....
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357788999999998653
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.60 E-value=0.83 Score=38.11 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.7
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..|.-+++.|++|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567789999999999984
No 272
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.54 E-value=1.1 Score=40.31 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH-hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQK-AVLEPA-MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~-~~i~~i-~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.....+.|.+.-. .+... +.+..+ ..++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34567777656666666654210 00000 000001 13578999999999999854
No 273
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=76.52 E-value=1.3 Score=37.92 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999853
No 274
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.46 E-value=2.5 Score=49.88 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH-HH---HHHHhCCCcEEEEccCCCchhHHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQK-AV---LEPAMQGRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~-~~---i~~i~~g~d~li~a~TGsGKT~~~~ 154 (384)
+...+.+.+.+.|+. +++.+. ++ ...+...+.++++||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345677778888885 666653 22 2334456789999999999999764
No 275
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=76.36 E-value=1.2 Score=41.31 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.5
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..|..++++||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45788999999999999983
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=76.32 E-value=1.2 Score=36.17 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 277
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.15 E-value=1.3 Score=41.13 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++|+||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999865
No 278
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.58 E-value=2 Score=39.21 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.+.++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999854
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=75.54 E-value=1.3 Score=36.62 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++-+++.|+.|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 280
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=75.23 E-value=10 Score=38.82 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCC----------------------------------CceEEEECCCChHHHHHH
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPS----------------------------------LDTICVYGGTPISHQMRA 217 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~----------------------------------~~~~~~~g~~~~~~~~~~ 217 (384)
.+.++||.+|++.-+..+.+.+.+.... ..+..++|+.+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3577999999999999999998875432 247788898877655443
Q ss_pred Hh---c-CCCEEEECchhHHHHHHccCCCCCCccEEEE
Q 016712 218 LD---Y-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 218 ~~---~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vVi 251 (384)
.. . ..+|+|+| +.+ ...+++..+.+||-
T Consensus 331 ~~~f~~g~~~vlvaT-----~~l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 331 EEGFRQRKIKVIVAT-----PTL-AAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHTTCSCEEEEC-----GGG-GGSSCCCBSEEEEC
T ss_pred HHHHHcCCCeEEEEC-----hHH-hcccCCCceEEEEe
Confidence 32 2 47999999 333 35677888877553
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.04 E-value=1.6 Score=37.45 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
|+-+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999998744
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.97 E-value=1.5 Score=36.59 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++.++++|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 283
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=74.89 E-value=1.4 Score=40.56 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++++||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999865
No 284
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=74.80 E-value=7.4 Score=35.06 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=49.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+. ++..++|+.+..+....+ .+ ..+|+|+| +.+. .++++.+++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gid~~~~~ 286 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT-----DVAS-RGLDIPLVE 286 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----HHHH-TTCCCCCBS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc-----Cccc-cCCCccCCC
Confidence 46679999999998887665544 456777877665544333 22 47999999 4444 467888999
Q ss_pred EEEEeCc
Q 016712 248 FVVLDEA 254 (384)
Q Consensus 248 ~vViDEa 254 (384)
+||.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8887443
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.77 E-value=1 Score=37.30 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+.+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 286
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.65 E-value=1.3 Score=38.95 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=28.7
Q ss_pred CCCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 98 GLDISKLDISQDIVAALARR--GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 98 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
...|+++.-.+...+.+.+. .+..+..++.. .....+.+++.||+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 35677776666666665542 01011101100 0112357999999999999854
No 287
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.47 E-value=1.3 Score=39.14 Aligned_cols=16 Identities=25% Similarity=-0.037 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++++||+|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999865
No 288
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.44 E-value=3.3 Score=35.06 Aligned_cols=20 Identities=20% Similarity=-0.071 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~ 154 (384)
.|.-+++.|++|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34568999999999998543
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.43 E-value=1.7 Score=37.53 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=16.2
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..|+-+.++||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45678899999999999984
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.40 E-value=1.3 Score=40.74 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+-++|.||||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34788999999999865
No 291
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.23 E-value=4.7 Score=38.64 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=47.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
+.+++|++|++.-+..+++.+++. ++++..++|+. .......+.+ ..+|+|+| +.+. ..++++ +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISE-MGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGG-TSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHH-cCcccC-CcEE
Confidence 457999999999999999999987 47788888763 3333334443 48999999 4444 345565 5554
No 292
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=73.60 E-value=1.6 Score=37.75 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~ 152 (384)
++..|.-++++||+|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 356778899999999999984
No 293
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=73.57 E-value=6.3 Score=37.96 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=48.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.++||.+|++.-++++++.+++.+ +.+..+++... ......+.+ ..+|+|+| +.+ ...+++++ ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g--~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DIS-EMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT--CCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGG-GSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC--CeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHH-HhCcCCCC-CEEE
Confidence 4579999999999999999998864 67777777544 233333443 48999999 444 34567777 6665
No 294
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.08 E-value=1.6 Score=40.27 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM-----QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-----~g~d~li~a~TGsGKT~~~ 153 (384)
+...|++++-.+.+.+.|.+.-. .|.+ .+.+. ..+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34678888766677776664210 0100 01111 2367999999999999854
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.80 E-value=1.7 Score=37.06 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677899999999999843
No 296
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=72.64 E-value=5.7 Score=40.45 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=50.5
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhcCCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
.+.++||.++++.-++++++.+++. ++++..++|+.+..+. ...+.+|+|+| +.+..+ ++++ +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 4678999999999999999999886 4788889998765542 23456999999 555443 3454 88776
No 297
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=72.62 E-value=2.7 Score=39.37 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=19.6
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778887 566799999999864
No 298
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.48 E-value=4.2 Score=37.11 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHH
Q 016712 136 GRDMIGRARTGTGKTLA 152 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~ 152 (384)
|.-+.++||+|+|||..
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 55688899999999984
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=72.46 E-value=1.7 Score=35.61 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++++|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999854
No 300
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.41 E-value=1.1 Score=40.06 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=32.5
Q ss_pred CCCCccCCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARRGISKLFPIQKAVLEPAM--QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.+.....+.+.-.. .. ....+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456788887777777777653110 00 012232221 1245999999999999853
No 301
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.38 E-value=1.7 Score=36.71 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHH
Q 016712 137 RDMIGRARTGTGKTLA 152 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~ 152 (384)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 302
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.88 E-value=4.6 Score=48.42 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHHH---HHHhCCCcEEEEccCCCchhHHHH
Q 016712 106 ISQDIVAALARRGISKLFPIQ-KAVL---EPAMQGRDMIGRARTGTGKTLAFG 154 (384)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q-~~~i---~~i~~g~d~li~a~TGsGKT~~~~ 154 (384)
+...+.+.+.++|+. +.+.+ .+++ +.+...+.++++||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345677777788985 66655 3343 234455779999999999999763
No 303
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.79 E-value=1.9 Score=36.60 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=16.4
Q ss_pred HHhCCCcEEEEccCCCchhHH
Q 016712 132 PAMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 132 ~i~~g~d~li~a~TGsGKT~~ 152 (384)
.+..|.-+.+.||+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567788899999999999984
No 304
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.78 E-value=1.6 Score=39.52 Aligned_cols=17 Identities=18% Similarity=0.095 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 305
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=71.54 E-value=3.2 Score=38.39 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455678877 567899999999864
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.52 E-value=1.7 Score=35.86 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+.++||+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566889999999999854
No 307
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=71.41 E-value=1.8 Score=35.04 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+++.|+.|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 308
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.35 E-value=11 Score=41.85 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMF 282 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~ 282 (384)
+++-+.+|+||+=.-+|..-...+.+.+..+.+++-+|+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5677889999999888876666666666665444444443
No 309
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.35 E-value=2.1 Score=35.65 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchhHH
Q 016712 137 RDMIGRARTGTGKTLA 152 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~ 152 (384)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4478999999999984
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=71.28 E-value=2 Score=36.21 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+++.|+.|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 311
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.15 E-value=1.7 Score=35.62 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+.++++|+.|+|||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3557899999999999854
No 312
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=70.98 E-value=2.1 Score=38.67 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999864
No 313
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=70.94 E-value=4.8 Score=35.08 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.1
Q ss_pred cEEEEccCCCchhHHHHHHHHH
Q 016712 138 DMIGRARTGTGKTLAFGIPILD 159 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~ 159 (384)
++++.++.|.|||..++--+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999976444433
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.47 E-value=2.2 Score=35.50 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.3
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+..++-+++.|+.|||||...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999854
No 315
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.26 E-value=1.9 Score=41.75 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++++++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 368999999999999865
No 316
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.00 E-value=2 Score=40.49 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.8
Q ss_pred HhCCCcEEEEccCCCchhHH
Q 016712 133 AMQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~ 152 (384)
+..|..++++||||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34677899999999999984
No 317
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=69.91 E-value=16 Score=36.11 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+-++|+|+.|.|||..+
T Consensus 148 ~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999999865
No 318
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.67 E-value=3.4 Score=39.44 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3455678876 566799999999864
No 319
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=69.58 E-value=1.9 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4678999999999999854
No 320
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=69.57 E-value=3.7 Score=38.01 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=20.7
Q ss_pred HHHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 128 ~~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
..+..++.|.| ++.-|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 45667788987 566899999999864
No 321
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=69.56 E-value=2.5 Score=38.97 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.++++||||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999865
No 322
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=69.54 E-value=3 Score=38.84 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=18.4
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 016712 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
+..+++|.| ++.-|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445667876 566799999999874
No 323
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=69.46 E-value=3.7 Score=38.34 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455678876 566799999999864
No 324
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.38 E-value=3.4 Score=39.38 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=20.5
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677889987 466799999999875
No 325
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=69.33 E-value=3.7 Score=38.60 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4556678876 566799999999864
No 326
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=69.28 E-value=3.6 Score=38.75 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455678876 566799999999864
No 327
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=69.18 E-value=3.7 Score=38.53 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455678876 566799999999874
No 328
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.11 E-value=3.8 Score=38.17 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=19.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3455678877 566799999999864
No 329
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=69.10 E-value=3.7 Score=38.34 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556678876 566799999999875
No 330
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=69.05 E-value=3.7 Score=38.43 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4566778887 466799999999875
No 331
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=68.92 E-value=3.7 Score=38.42 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=18.7
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 016712 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
+..++.|.| ++.-|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445678876 566799999999864
No 332
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=68.78 E-value=3.8 Score=38.42 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556678887 466799999999864
No 333
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.64 E-value=2.2 Score=39.81 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999854
No 334
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.59 E-value=1.2 Score=39.37 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999864
No 335
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=68.38 E-value=2.3 Score=36.16 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 336
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=68.35 E-value=3.8 Score=38.30 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=19.3
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3456678876 566799999999864
No 337
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=68.17 E-value=24 Score=36.59 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=54.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHh---------CCCCceEEEECCCChHHHHHHHhc---------CCCEEEECchhHH
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHES---------APSLDTICVYGGTPISHQMRALDY---------GVDAVVGTPGRVI 233 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~---------~~~IlV~Tp~~l~ 233 (384)
.+.++||.+|++.-+..+.+.+.+. ..++.+..++|+.+..++...+.. ...|||+|
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT----- 376 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----- 376 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----
Confidence 3668999999999999999888752 246778889999887666544432 35799999
Q ss_pred HHHHccCCCCCCccEEEE
Q 016712 234 DLIKRNALNLSEVQFVVL 251 (384)
Q Consensus 234 ~~l~~~~~~~~~l~~vVi 251 (384)
+.+. ..+++.++.+||-
T Consensus 377 ~iae-~GidIp~v~~VId 393 (773)
T 2xau_A 377 NIAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp THHH-HTCCCTTEEEEEE
T ss_pred cHHH-hCcCcCCeEEEEe
Confidence 4443 4567888887763
No 338
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=68.16 E-value=2.4 Score=39.47 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++|+||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999865
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=68.01 E-value=2.1 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-+++.|++|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999864
No 340
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=67.87 E-value=3.7 Score=38.47 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=19.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556678876 566799999999864
No 341
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=67.86 E-value=3.1 Score=36.88 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.5
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
+.|+.+++.|++|+|||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999864
No 342
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.78 E-value=3.5 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+-.++.|+.|||||..+
T Consensus 6 mi~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKM 22 (199)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 35789999999999965
No 343
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=67.74 E-value=4 Score=38.25 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=47.6
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.. +.+..++|+.+..+....+ .. ..+|+|+|. .+ ...+++.+++
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~v~ 350 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARD--FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LL-ARGIDVQQVS 350 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTT--CCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SC-C--CCGGGCS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcC--CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-ccCCCccCCC
Confidence 34579999999999999999998764 6777888887655443333 23 378999993 22 3456777888
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||.-.
T Consensus 351 ~Vi~~~ 356 (414)
T 3eiq_A 351 LVINYD 356 (414)
T ss_dssp CEEESS
T ss_pred EEEEeC
Confidence 887543
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=67.69 E-value=2.4 Score=36.06 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 345
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=67.65 E-value=3.4 Score=38.54 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677788987 466799999999875
No 346
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.63 E-value=1.8 Score=35.89 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 347
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.59 E-value=1.7 Score=40.05 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999854
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=66.84 E-value=2.2 Score=35.89 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 349
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.79 E-value=3.9 Score=39.06 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=20.8
Q ss_pred HHHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 128 AVLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 128 ~~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
..+..++.|.| ++.-|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 36777888987 566799999999874
No 350
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=66.77 E-value=2.4 Score=35.74 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+..+...+ ....|.-+.+.|++|+|||...
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 444444433 2235677889999999999854
No 351
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=66.75 E-value=3.6 Score=38.72 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667788887 566799999999875
No 352
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=66.74 E-value=3.1 Score=35.33 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.++.++.. ..+..|+-+++.|+.|+|||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 45565555 34566778999999999999854
No 353
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=66.74 E-value=4.2 Score=38.52 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=19.2
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455678876 566799999999875
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=66.73 E-value=2.9 Score=34.25 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||..+
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999864
No 355
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.60 E-value=4.6 Score=36.82 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhHH
Q 016712 135 QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~ 152 (384)
.|.-+.++||+|+|||..
T Consensus 99 ~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SCEEEEEECCTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 345678999999999985
No 356
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.58 E-value=2.6 Score=35.44 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+-++++|+.|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.41 E-value=2.9 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++.+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 358
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.30 E-value=2.8 Score=34.96 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=65.90 E-value=2.6 Score=38.06 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.-++++||+|+|||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999854
No 360
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=65.85 E-value=2.8 Score=34.80 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++++||+|+|||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999854
No 361
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=65.82 E-value=4.7 Score=38.93 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=18.7
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 016712 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
+..++.|.| ++.-|.||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445678876 566799999999875
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=65.80 E-value=2.7 Score=35.01 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=16.5
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..++-++++|++|||||...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999854
No 363
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.79 E-value=3.9 Score=38.51 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=18.3
Q ss_pred HHHHhCCCc--EEEEccCCCchhHHH
Q 016712 130 LEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
+..++.|.| ++.-|+||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 445667876 566799999999864
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.77 E-value=2.8 Score=36.06 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++.+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=65.68 E-value=2.7 Score=40.05 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++|.||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3688999999999865
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.67 E-value=3.3 Score=34.13 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.|+.|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999864
No 367
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=65.35 E-value=3.6 Score=38.38 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778877 566799999999875
No 368
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=64.81 E-value=3.3 Score=34.74 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++.+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 369
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=64.71 E-value=3.1 Score=33.63 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999854
No 370
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=64.63 E-value=3.9 Score=38.73 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=17.9
Q ss_pred HHHhCCCc--EEEEccCCCchhHHH
Q 016712 131 EPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 131 ~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
..++.|.| ++.-|+||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34667876 566799999999875
No 371
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=64.56 E-value=14 Score=37.32 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.++||.++++.-+..+++.+++.+ +++..++|.. .......+.+ ..+|+|+| +.+. ..+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g--~~v~~lhg~~-R~~~l~~F~~g~~~VLVaT-----dv~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSRKT-FDTEYPKTKLTDWDFVVTT-----DISE-MGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT--CCEEEECTTT-HHHHTTHHHHSCCSEEEEC-----GGGG-TTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC--CcEEEEChHH-HHHHHHhhcCCCcEEEEEC-----cHHH-cCcccC-ceEEE
Confidence 4579999999999999999999874 6777788752 2223333333 48999999 4443 345664 77763
No 372
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.45 E-value=1.8 Score=37.45 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=12.5
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..|.-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677899999999999853
No 373
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.23 E-value=2.8 Score=40.41 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHcCCCCCcHHHHH-HH-HHHhCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARRGISKLFPIQKA-VL-EPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~-~i-~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++++-...+.+.|.+.-. .|.... .+ ......+.+++.||+|+|||..+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 345678887666667766664310 000000 00 00123468999999999999854
No 374
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=63.93 E-value=28 Score=33.76 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.1
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+.+|+..++.|+.|.|||...
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHH
T ss_pred hccCCEEEEECCCCCCccHHH
Confidence 457889999999999999854
No 375
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.91 E-value=2.9 Score=35.49 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhHH
Q 016712 135 QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~ 152 (384)
.|.-+.|.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455678999999999984
No 376
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=63.84 E-value=3.6 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999854
No 377
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.76 E-value=3.3 Score=33.28 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999985
No 378
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=63.73 E-value=4.5 Score=39.28 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999865
No 379
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=63.62 E-value=12 Score=40.78 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=41.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhc---cCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 016712 138 DMIGRARTGTGKTLAFGIPILDKIIKFNEK---HGRGRNPLCLVLAPTRELAKQVEKEFHES 196 (384)
Q Consensus 138 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~~~~~~~lvl~Pt~~La~q~~~~~~~~ 196 (384)
..+|.|..|||||.+-.--++..+...... .......++|+|+=|+.-+.++.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999997666666666431100 00112347999999999999998887764
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=63.46 E-value=3.7 Score=35.12 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++.+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999854
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=63.30 E-value=3.3 Score=34.92 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.8
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..++-++++|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35678999999999999864
No 382
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=62.88 E-value=5.8 Score=36.28 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=23.7
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
..+.+|++..+.+.+. ..+...++.+.+...++..|-
T Consensus 151 ~ad~ill~k~dl~de~---~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVAGEA---EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTCSCT---HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccCCHH---HHHHHHHHHhCCCCeEEEecc
Confidence 4577888888866332 566666666666666665443
No 383
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=62.80 E-value=26 Score=35.75 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=55.2
Q ss_pred EEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChH---HHHHHHhc---CCCEEEECchhHHHHHHccCCCCCCccEE
Q 016712 176 CLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPIS---HQMRALDY---GVDAVVGTPGRVIDLIKRNALNLSEVQFV 249 (384)
Q Consensus 176 ~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~---~~~IlV~Tp~~l~~~l~~~~~~~~~l~~v 249 (384)
.+|+++++.-+.++.+.+.+. ++.+..++|+.+.. .....+.. ..+|+|+| +.+ ...+++ ++++|
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~-e~GlDi-~v~~V 393 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAI-GMGLNL-SIRRI 393 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGG-GSSCCC-CBSEE
T ss_pred CEEEEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHH-HCCcCc-CccEE
Confidence 466699999999999999885 47888999998876 34445553 37999999 443 356678 89999
Q ss_pred EEeCcccc
Q 016712 250 VLDEADQM 257 (384)
Q Consensus 250 ViDEah~~ 257 (384)
|.-...+.
T Consensus 394 I~~~~~k~ 401 (677)
T 3rc3_A 394 IFYSLIKP 401 (677)
T ss_dssp EESCSBC-
T ss_pred EECCcccc
Confidence 99888654
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=62.76 E-value=3.2 Score=34.11 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+.+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999853
No 385
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.63 E-value=3.6 Score=33.37 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.++++.|+.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999965
No 386
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=62.55 E-value=3.4 Score=34.08 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+++.|+.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 387
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=62.48 E-value=29 Score=30.72 Aligned_cols=96 Identities=11% Similarity=0.181 Sum_probs=60.1
Q ss_pred cCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH---Hhc
Q 016712 144 RTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRA---LDY 220 (384)
Q Consensus 144 ~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~ 220 (384)
...+||... +.-++..+.. .+.++||.+.++..+..+.+.+.+.. ++.+..++|+.+..+.... +..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~--------~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD--------EGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh--------CCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcC
Confidence 346788763 4445544432 35679999999999999998888742 3566778888775544333 333
Q ss_pred C--CC-EEEECchhHHHHHHccCCCCCCccEEEEeCcc
Q 016712 221 G--VD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEAD 255 (384)
Q Consensus 221 ~--~~-IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah 255 (384)
+ +. ++++| .. ...++++...+.||+=+..
T Consensus 162 ~~~~~v~L~st-~~-----~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 162 NPSVKFIVLSV-KA-----GGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp CTTCCEEEEEC-CT-----TCCCCCCTTCSEEEECSCC
T ss_pred CCCCCEEEEeh-hh-----hcCCcCcccCCEEEEECCC
Confidence 3 45 45555 21 1345677777777754443
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.44 E-value=3.4 Score=33.96 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-.+++|++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468999999999985
No 389
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.05 E-value=10 Score=31.32 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=12.7
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-+.+.|+.|+|||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 390
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.96 E-value=3.2 Score=43.31 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=34.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 016712 96 DEGLDISKLDISQDIVAALARR-GISKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 96 ~~~~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
.+...|++++.-....+.|.+. -+....|.+..-+ -+...+.+|+.||+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 3456788888888888888875 2211122111100 0112357999999999999854
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=61.87 E-value=3.5 Score=35.05 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 392
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=61.83 E-value=4.8 Score=40.97 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=49.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHh--C--CCCceEEEECC--------CChHHHHHHH---hc-CCCEEEECchhHHHHH
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHES--A--PSLDTICVYGG--------TPISHQMRAL---DY-GVDAVVGTPGRVIDLI 236 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~--~--~~~~~~~~~g~--------~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l 236 (384)
+.++||.++++..+..+.+.+... + .++++..++|+ .+..+....+ .. ..+|+|+|- .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~- 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----V- 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----S-
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----c-
Confidence 678999999999999999999875 1 14677778887 5555444333 23 478999993 2
Q ss_pred HccCCCCCCccEEEE
Q 016712 237 KRNALNLSEVQFVVL 251 (384)
Q Consensus 237 ~~~~~~~~~l~~vVi 251 (384)
...++++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 234677888888874
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=61.76 E-value=4.8 Score=37.07 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999854
No 394
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=61.64 E-value=7.2 Score=37.64 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=46.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
+.++||.+|++.-+..+++.+++.+ +.+..+++... ......+.+ ..+|+|+| +.+. ..+++.+ ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g--~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT-----~v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG--KKVIQLNRKSY-DTEYPKCKNGDWDFVITT-----DISE-MGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEEESTTCC-CCCGGGSSSCCCSEEEES-----SCC----CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC--CcEEecCHHHH-HHHHhhccCCCceEEEEC-----ChHH-hCeecCC-CEEE
Confidence 5679999999999999999999874 67777777532 222233333 47999999 3332 3556777 6655
No 395
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=61.62 E-value=3.5 Score=38.68 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-.+++||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999864
No 396
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=61.44 E-value=3.8 Score=41.23 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999843
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=61.44 E-value=3.5 Score=34.13 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+.++++|+.|+|||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999854
No 398
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=61.39 E-value=3.3 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.012 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCchhHH
Q 016712 135 QGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~ 152 (384)
.|.-+.+.||+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345578999999999984
No 399
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.34 E-value=3.2 Score=34.09 Aligned_cols=19 Identities=21% Similarity=0.115 Sum_probs=11.6
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++-+++.|+.|||||..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999864
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=61.14 E-value=6.4 Score=36.85 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.-+.++||+|+|||...
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35789999999999853
No 401
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=61.07 E-value=4.6 Score=38.07 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=19.6
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..++.|.| ++.-|+||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5566778876 566799999999864
No 402
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=60.97 E-value=3.8 Score=33.78 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
No 403
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.97 E-value=6.1 Score=39.73 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHhCCCcEEEEccCCCchhHHH
Q 016712 130 LEPAMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 130 i~~i~~g~d~li~a~TGsGKT~~~ 153 (384)
-..+..|..+++.||+|+|||..+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 334667899999999999999854
No 404
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=60.96 E-value=3.8 Score=34.97 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 405
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=60.93 E-value=3.9 Score=39.48 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 368999999999999864
No 406
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=60.86 E-value=4.1 Score=34.30 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4677999999999999854
No 407
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=60.80 E-value=3.5 Score=36.47 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|||||..+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 346899999999999854
No 408
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=60.75 E-value=4.1 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++.+++.|+.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.64 E-value=3.5 Score=36.05 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLP 274 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~ 274 (384)
..+-+++++||--.-+|......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45668899999988888766677777777664
No 410
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=60.58 E-value=4 Score=34.02 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999854
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=60.16 E-value=4.1 Score=34.82 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++.+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999854
No 412
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=60.16 E-value=3.1 Score=35.16 Aligned_cols=20 Identities=20% Similarity=-0.069 Sum_probs=15.9
Q ss_pred hCCCcEEEEccCCCchhHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~ 153 (384)
..+.-+.+.|++|||||...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34556889999999999853
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=60.06 E-value=4.5 Score=34.99 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++.+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3468999999999999854
No 414
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=60.03 E-value=12 Score=36.78 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILD 159 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~ 159 (384)
+.+++|.|.||||||.+. ..++.
T Consensus 167 ~pHlLIaG~TGSGKSt~L-~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV-NAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHH-HHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHH
Confidence 468999999999999853 34433
No 415
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=59.97 E-value=5.8 Score=37.15 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.5
Q ss_pred CCCc--EEEEccCCCchhHHH
Q 016712 135 QGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d--~li~a~TGsGKT~~~ 153 (384)
.|.+ ++.-|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 578899999999864
No 416
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.90 E-value=11 Score=35.54 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceE-EEECCCChHHHHHHHhc-CCCEEEE----CchhHHHHHHccCCCCCC-
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTI-CVYGGTPISHQMRALDY-GVDAVVG----TPGRVIDLIKRNALNLSE- 245 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~-~~~IlV~----Tp~~l~~~l~~~~~~~~~- 245 (384)
+.++||.++++.-+..+++.+...+ +.+. .++|. ..+ ...+.+ ..+|+|+ | +.+ ..++++.+
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T-----~~~-~~GiDip~~ 320 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFK--FNVGETWSEF--EKN-FEDFKVGKINILIGVQAYY-----GKL-TRGVDLPER 320 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTT--CCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTT-----CCC-CCCCCCTTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CceehhhcCc--chH-HHHHhCCCCeEEEEecCcC-----chh-hccCccccc
Confidence 4679999999999999999999864 5665 44553 222 455554 4899999 6 222 34678888
Q ss_pred ccEEEEeCcc
Q 016712 246 VQFVVLDEAD 255 (384)
Q Consensus 246 l~~vViDEah 255 (384)
+++||.-...
T Consensus 321 v~~VI~~~~p 330 (414)
T 3oiy_A 321 IKYVIFWGTP 330 (414)
T ss_dssp CCEEEEESCC
T ss_pred cCEEEEECCC
Confidence 9998864443
No 417
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.85 E-value=17 Score=37.63 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=39.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--CCCceE--------EEECCCChHHHH---HHHhc--CCCEEEECchhHHHHH
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSLDTI--------CVYGGTPISHQM---RALDY--GVDAVVGTPGRVIDLI 236 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--~~~~~~--------~~~g~~~~~~~~---~~~~~--~~~IlV~Tp~~l~~~l 236 (384)
.+.++||.++++..+..+.+.+++.. .++++. ..+|+.+..+.. ..+.. ..+|+|+| +.+
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT-----~~~ 704 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----SVA 704 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEE-----CC-
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEc-----Cch
Confidence 45789999999999999999998742 123322 334444433332 23333 37899999 333
Q ss_pred HccCCCCCCccEEEEeCc
Q 016712 237 KRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 237 ~~~~~~~~~l~~vViDEa 254 (384)
..++++.++++||.=+.
T Consensus 705 -~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 705 -DEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp -------CCCSEEEEESC
T ss_pred -hcCCCchhCCEEEEeCC
Confidence 24567888888886433
No 418
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=59.84 E-value=5.4 Score=34.08 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+.+++.||+||||+..+
T Consensus 1 M~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQA 17 (206)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999998754
No 419
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.65 E-value=1.9 Score=41.80 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+++.+...+ ..+..++|+.+..+....+ .. ..+|+|+| +.+ ..++++.++++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~--~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~-~~GlDip~v~~ 404 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEG--HQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-ARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCC--ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----ccc-ccCCccccCCE
Confidence 4679999999999999998888764 5677788876654433322 22 47899999 443 34567888888
Q ss_pred EE
Q 016712 249 VV 250 (384)
Q Consensus 249 vV 250 (384)
||
T Consensus 405 VI 406 (479)
T 3fmp_B 405 VI 406 (479)
T ss_dssp --
T ss_pred EE
Confidence 86
No 420
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=59.41 E-value=4.2 Score=34.14 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999854
No 421
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=59.34 E-value=14 Score=36.81 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=51.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCC-----C-ceEEEECCCCh--HHHHHHHhcC-CC---EEEECchhHHHHHHcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPS-----L-DTICVYGGTPI--SHQMRALDYG-VD---AVVGTPGRVIDLIKRN 239 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~-----~-~~~~~~g~~~~--~~~~~~~~~~-~~---IlV~Tp~~l~~~l~~~ 239 (384)
.+.++||.++++.-|..+++.+.+.++. - .+..++|.... ......+.++ .+ |+|+| +.+ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hc
Confidence 4678999999999999999999887532 1 14445565432 1222333332 23 77777 333 34
Q ss_pred CCCCCCccEEEEeCcc
Q 016712 240 ALNLSEVQFVVLDEAD 255 (384)
Q Consensus 240 ~~~~~~l~~vViDEah 255 (384)
++++.++++||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 6788999999987664
No 422
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=59.30 E-value=7.3 Score=38.02 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
..+++||+|||++|.+. +......+++.+ +.|+|+ |||+
T Consensus 413 ~~~rlvvlDEA~kmD~~-~~~~~~~l~~~l--glQlii--atP~ 451 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAM-SINTLFELCERL--DMQLLI--AAPE 451 (483)
T ss_dssp CCCCEEEESSGGGSCHH-HHHHHHHHHHHT--TCEEEE--EESS
T ss_pred CceeEEEEeccccCCHH-HHHHHHHHHHHc--CCEEEE--ECcc
Confidence 57999999999766554 666667777776 788886 5655
No 423
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=59.01 E-value=4.4 Score=33.97 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
+-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999854
No 424
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=58.94 E-value=9.3 Score=35.03 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
++-++++|++|+|||...
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999854
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=58.61 E-value=5.2 Score=36.52 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.3
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..|.-+.++||+|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677899999999999984
No 426
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=58.54 E-value=17 Score=37.09 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCC-------------------------------CceEEEECCCChHHHHHHH---
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPS-------------------------------LDTICVYGGTPISHQMRAL--- 218 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~-------------------------------~~~~~~~g~~~~~~~~~~~--- 218 (384)
+.++||.+|++.-+..+...+.+.... .++..++|+.+..+.....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 567999999999999998888764211 2477888888766554333
Q ss_pred hc-CCCEEEECchhHHHHHHccCCCCCCccEEEEeCccc
Q 016712 219 DY-GVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQ 256 (384)
Q Consensus 219 ~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vViDEah~ 256 (384)
.. ..+|+|+|. .+ ...+++..+.+ |||...+
T Consensus 317 ~~g~~~vlvaT~-----~l-~~Gvdip~~~~-VI~~~~~ 348 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TL-SAGINTPAFRV-IIRDIWR 348 (720)
T ss_dssp HTTSSCEEEECS-----TT-GGGCCCCBSEE-EECCSEE
T ss_pred HCCCCeEEEECc-----Hh-hccCCCCceEE-EEcCCee
Confidence 33 479999993 22 34667888775 5554433
No 427
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.17 E-value=4.2 Score=39.66 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=30.4
Q ss_pred CCCCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHH--hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARR--GISKLFPIQKAVLEPA--MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i--~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-....++.+.+. .+..+. .+..+ .-.+.+++.||+|+|||..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 345677776566666666542 111111 11111 11356999999999999854
No 428
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=58.04 E-value=4.6 Score=33.93 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 429
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=57.93 E-value=15 Score=37.38 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=50.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCC----------------------------CCceEEEECCCChHHHHHHH---hc-
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAP----------------------------SLDTICVYGGTPISHQMRAL---DY- 220 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~----------------------------~~~~~~~~g~~~~~~~~~~~---~~- 220 (384)
+.++||.+|++.-+..+.+.+.+... ..++..++|+.+..+..... .+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 56799999999999998888776421 12466788888776554333 23
Q ss_pred CCCEEEECchhHHHHHHccCCCCCCccEEE
Q 016712 221 GVDAVVGTPGRVIDLIKRNALNLSEVQFVV 250 (384)
Q Consensus 221 ~~~IlV~Tp~~l~~~l~~~~~~~~~l~~vV 250 (384)
..+|+|+|. . ....+++..+.+||
T Consensus 322 ~~~vlvaT~-----~-l~~Gidip~~~~VI 345 (702)
T 2p6r_A 322 NIKVVVATP-----T-LAAGVNLPARRVIV 345 (702)
T ss_dssp SCCEEEECS-----T-TTSSSCCCBSEEEE
T ss_pred CCeEEEECc-----H-HhccCCCCceEEEE
Confidence 479999993 2 23567788887654
No 430
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=57.90 E-value=4.1 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.9
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..|.-+.+.||+|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999983
No 431
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=57.68 E-value=5 Score=35.26 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999854
No 432
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=57.43 E-value=13 Score=39.94 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHhc-CCCEEEE----CchhHHHHHHccCCCCCCc-
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDY-GVDAVVG----TPGRVIDLIKRNALNLSEV- 246 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~----Tp~~l~~~l~~~~~~~~~l- 246 (384)
+.++||.++++.-+..+.+.++.. +++..++|+.. .....+.. ..+|+|+ | +.+. .++++.++
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~T-----dv~~-rGIDip~VI 343 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYY-----GTLV-RGLDLPERI 343 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSSS--HHHHHHHHTSCSEEEEECC------------CCSCCTTTC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCC-----CeeE-eccccCCcc
Confidence 567999999999999988888775 67778888763 33444444 4799999 6 4443 47789994
Q ss_pred cEEEEeCcc
Q 016712 247 QFVVLDEAD 255 (384)
Q Consensus 247 ~~vViDEah 255 (384)
++||.-.+-
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 998876665
No 433
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=57.29 E-value=5.3 Score=34.81 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.-+++.|+.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999843
No 434
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.24 E-value=4.4 Score=37.94 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHH
Q 016712 139 MIGRARTGTGKTLAF 153 (384)
Q Consensus 139 ~li~a~TGsGKT~~~ 153 (384)
.++.|+||+|||.+.
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 435
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=57.18 E-value=5 Score=33.08 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 436
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.69 E-value=4.8 Score=34.66 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=20.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHC
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERL 273 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l 273 (384)
..+-+++++||--.-+|......+..++..+
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4456677777777777766666666665554
No 437
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.54 E-value=3.5 Score=36.28 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
..++++|++|||||..+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 438
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.30 E-value=6.8 Score=40.49 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
..++++.||+|+|||.++
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999865
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=56.28 E-value=5.2 Score=34.37 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 440
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.82 E-value=7.9 Score=32.48 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCccEEEEeCcccc--cCCChHHHHHHHHHHCCCCCcEEEEEccCC
Q 016712 243 LSEVQFVVLDEADQM--LSVGFAEDVEVILERLPQNRQSMMFSATMP 287 (384)
Q Consensus 243 ~~~l~~vViDEah~~--~~~~~~~~~~~il~~l~~~~q~l~~SAT~~ 287 (384)
..+.+++|+||+..+ .+..|...+..+++. ...+|+-++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 456789999998776 344476777777663 333555467764
No 441
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.60 E-value=14 Score=41.71 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCH
Q 016712 136 GRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTR 183 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~ 183 (384)
|..+++.|++|+|||..++--+...+. .+..++|+.-..
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~---------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEH 72 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh---------CCCceEEEEecC
Confidence 578999999999999976555554442 255688887543
No 442
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=55.41 E-value=4.8 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.0
Q ss_pred HhCCCcEEEEccCCCchhHHH
Q 016712 133 AMQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 133 i~~g~d~li~a~TGsGKT~~~ 153 (384)
+..++.++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 446789999999999999854
No 443
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=55.17 E-value=39 Score=26.28 Aligned_cols=42 Identities=5% Similarity=0.012 Sum_probs=24.0
Q ss_pred ccEEEEeCcccccCCChHHHHHHHHHHC-CCCCcEEEEEccCCh
Q 016712 246 VQFVVLDEADQMLSVGFAEDVEVILERL-PQNRQSMMFSATMPP 288 (384)
Q Consensus 246 l~~vViDEah~~~~~~~~~~~~~il~~l-~~~~q~l~~SAT~~~ 288 (384)
-+.++|||+|.+... ....+..++... +.++.+|+.|...+.
T Consensus 76 ~~~l~lDei~~l~~~-~q~~Ll~~l~~~~~~~~~iI~~tn~~~~ 118 (143)
T 3co5_A 76 GGVLYVGDIAQYSRN-IQTGITFIIGKAERCRVRVIASCSYAAG 118 (143)
T ss_dssp TSEEEEEECTTCCHH-HHHHHHHHHHHHTTTTCEEEEEEEECTT
T ss_pred CCeEEEeChHHCCHH-HHHHHHHHHHhCCCCCEEEEEecCCCHH
Confidence 368999999987543 233333334332 345666665554433
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=55.15 E-value=4.8 Score=35.46 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
+.+-+++++||--.-+|......+..++..+... .+++++.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g-~tviivt 201 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKG-RTVIIIA 201 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTT-SEEEEEC
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 3456789999988877776666666666665333 3444443
No 445
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=55.10 E-value=25 Score=34.13 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=36.3
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--CCCceEEE--------ECCCChHHHH---HHHhc--CCCEEEECchhHHHHH
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICV--------YGGTPISHQM---RALDY--GVDAVVGTPGRVIDLI 236 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--~~~~~~~~--------~g~~~~~~~~---~~~~~--~~~IlV~Tp~~l~~~l 236 (384)
.+.++||.++++..+..+.+.+.+.. +++++..+ +|+.+..+.. ..+.. ..+|+|+| +.+
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT-----~~~ 463 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----SVA 463 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEE-----C--
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEc-----Cch
Confidence 36689999999999999999998752 12333333 3444333322 23333 37899999 333
Q ss_pred HccCCCCCCccEEEEeCc
Q 016712 237 KRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 237 ~~~~~~~~~l~~vViDEa 254 (384)
..++++.++++||.=+.
T Consensus 464 -~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 464 -DEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp ----------CEEEEETC
T ss_pred -hcCCCchhCCEEEEeCC
Confidence 34567888888886433
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=54.97 E-value=4.8 Score=34.92 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=16.0
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..|.-+.+.||+|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999983
No 447
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=54.89 E-value=5.4 Score=33.18 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 448
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=54.75 E-value=4.7 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.8
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..|.-+.+.||+|+|||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999983
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=54.46 E-value=5 Score=35.60 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=25.6
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
+-+++++||--.-+|......+..++..+... .+++++.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~-~tviivt 211 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIA 211 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTT-SEEEEEC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEEc
Confidence 34688899988777766666666667666543 3444443
No 450
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=54.45 E-value=1e+02 Score=26.42 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=52.1
Q ss_pred hCCCcEEEEccCC--CchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCCh
Q 016712 134 MQGRDMIGRARTG--TGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPI 211 (384)
Q Consensus 134 ~~g~d~li~a~TG--sGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~ 211 (384)
++++.++|.|.+| -|+.++ ..+.+ .|..++++.-..+-..+..+.+.+.. +-++..+..+...
T Consensus 20 l~~k~vlITGasg~GIG~~~a------~~l~~--------~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~ 84 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTA------RRALL--------EGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTS 84 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHH------HHHHH--------TTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTC
T ss_pred CCCCEEEEECCCCCchHHHHH------HHHHH--------CCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCC
Confidence 4678899998875 455543 33322 36678888877777777777776654 2356666666655
Q ss_pred HHHHHHHh-------cCCCEEEECch
Q 016712 212 SHQMRALD-------YGVDAVVGTPG 230 (384)
Q Consensus 212 ~~~~~~~~-------~~~~IlV~Tp~ 230 (384)
.+....+. ...|++|-+.+
T Consensus 85 ~~~v~~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 85 TEAVDALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 44433332 25799998866
No 451
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=54.32 E-value=5.9 Score=32.79 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.1
Q ss_pred EEEEccCCCchhHHH
Q 016712 139 MIGRARTGTGKTLAF 153 (384)
Q Consensus 139 ~li~a~TGsGKT~~~ 153 (384)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999854
No 452
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.10 E-value=96 Score=28.37 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.++++|++|+|||...
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999854
No 453
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=53.84 E-value=5 Score=34.68 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=27.0
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+-+++++||--.-+|......+..++..+...-..++++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~v 196 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999988887766666777766663322344443
No 454
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=53.62 E-value=5.2 Score=33.97 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 016712 137 RDMIGRARTGTGKTLAF 153 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~ 153 (384)
.-+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=53.50 E-value=5.2 Score=35.67 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=25.2
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCC-CcEEEEE
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFS 283 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~-~q~l~~S 283 (384)
+-+++++||-=.-+|......+..+++.+... ...++++
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~v 204 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 56789999988777765666666666666432 2244443
No 456
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=53.49 E-value=33 Score=33.17 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=43.9
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--CCCceEEEEC--------CCChHHHH---HHHhc--CCCEEEECchhHHHHH
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYG--------GTPISHQM---RALDY--GVDAVVGTPGRVIDLI 236 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--~~~~~~~~~g--------~~~~~~~~---~~~~~--~~~IlV~Tp~~l~~~l 236 (384)
.+.++||.++++.-+..+.+.+...+ ..+.+..++| +.+..+.. ..+.. ..+|+|+| +.+
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT-----~~~ 462 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIAT-----SVA 462 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEEC-----CCT
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEc-----chh
Confidence 35679999999999999999998853 1234444333 44333332 23333 37999999 322
Q ss_pred HccCCCCCCccEEEE
Q 016712 237 KRNALNLSEVQFVVL 251 (384)
Q Consensus 237 ~~~~~~~~~l~~vVi 251 (384)
..++++.++++||.
T Consensus 463 -~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 -DEGIDIAECNLVIL 476 (555)
T ss_dssp -TCCEETTSCSEEEE
T ss_pred -hcCCccccCCEEEE
Confidence 34567888888875
No 457
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=53.48 E-value=4 Score=40.01 Aligned_cols=74 Identities=15% Similarity=0.312 Sum_probs=46.2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHH---HHHHHhc-CCCEEEECchhHHHHHHccCCCCCCcc
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH---QMRALDY-GVDAVVGTPGRVIDLIKRNALNLSEVQ 247 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~ 247 (384)
.+.++||.++++.-+..+++.+.+.. ..+.+++|+....+ ....+.. ..+|+|+| +.+ ...+++.+++
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~--~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT-----~~l-~~GiDip~v~ 427 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADG--HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-----NVI-ARGIDVSQVN 427 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTT--CCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-----C------CCCTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeC-----Chh-hcCCCccCCC
Confidence 35679999999999999998888753 56677777755332 2333333 47899999 333 3567888999
Q ss_pred EEEEeC
Q 016712 248 FVVLDE 253 (384)
Q Consensus 248 ~vViDE 253 (384)
+||...
T Consensus 428 ~VI~~~ 433 (508)
T 3fho_A 428 LVVNYD 433 (508)
T ss_dssp EEEC--
T ss_pred EEEEEC
Confidence 988533
No 458
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.26 E-value=6.2 Score=33.45 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-.+|.||+|+|||.+
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468899999999985
No 459
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=53.20 E-value=9.9 Score=31.74 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=21.6
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHH
Q 016712 139 MIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRE 184 (384)
Q Consensus 139 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~ 184 (384)
++|.|++|||||.-+. .+.. . +..++|+.....
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~-------~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIG-------D-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHC-------S-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHH-----HHHh-------c-CCCeEEEecCCC
Confidence 6899999999998442 2211 1 345788887443
No 460
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=53.08 E-value=5.4 Score=35.31 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
.+-+++++||-=.-+|......+..++..+...-..++++.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 210 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45578888888777776666666666666533223444433
No 461
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=52.85 E-value=5.1 Score=32.62 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=15.3
Q ss_pred hCCCcEEEEccCCCchhH
Q 016712 134 MQGRDMIGRARTGTGKTL 151 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~ 151 (384)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456668899999999998
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.62 E-value=5.5 Score=34.81 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCC-CCcEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMM 281 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~ 281 (384)
..+-+++++||--.-+|......+..++..+.. +.-+|+
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~ 194 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 455689999999888887666777777766642 333444
No 463
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=52.41 E-value=15 Score=39.16 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=58.4
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHH---HHhcC---CCEEEECchhHHHHHHccCCCCCC
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMR---ALDYG---VDAVVGTPGRVIDLIKRNALNLSE 245 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~IlV~Tp~~l~~~l~~~~~~~~~ 245 (384)
.+.++||.++++.-+..+.+.+.... ++++..++|+.+..+... .+..+ .+|+|+| +. ...++++.+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-----~v-~~~GlDl~~ 574 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-----EI-GSEGRNFQF 574 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-----CC-TTCSSCCTT
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-----ch-hhcCCCccc
Confidence 46789999999999999999998644 578888999877654433 33444 8999999 22 235678899
Q ss_pred ccEEEEeCcc
Q 016712 246 VQFVVLDEAD 255 (384)
Q Consensus 246 l~~vViDEah 255 (384)
++.||+-+..
T Consensus 575 ~~~VI~~d~p 584 (968)
T 3dmq_A 575 ASHMVMFDLP 584 (968)
T ss_dssp CCEEECSSCC
T ss_pred CcEEEEecCC
Confidence 9999987665
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=52.40 E-value=4.8 Score=35.29 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=25.5
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
+-+++++||--.-+|......+..++..+.... +++++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-tvi~vt 195 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGR-TTLVIA 195 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTS-EEEEEC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCC-EEEEEe
Confidence 357899999988888766666666666554333 444443
No 465
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=52.38 E-value=6.3 Score=33.13 Aligned_cols=18 Identities=17% Similarity=-0.086 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999853
No 466
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=52.32 E-value=5.7 Score=35.28 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+-+++++||--.-+|......+..++..+...-..++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34567899999988888766666777766653322244443
No 467
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.08 E-value=16 Score=38.77 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=42.0
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhC--CCCceEE--------EECCCChHHHH---HHHhc--CCCEEEECchhHHHHH
Q 016712 172 RNPLCLVLAPTRELAKQVEKEFHESA--PSLDTIC--------VYGGTPISHQM---RALDY--GVDAVVGTPGRVIDLI 236 (384)
Q Consensus 172 ~~~~~lvl~Pt~~La~q~~~~~~~~~--~~~~~~~--------~~g~~~~~~~~---~~~~~--~~~IlV~Tp~~l~~~l 236 (384)
.+.++||.++++..+..+.+.+.+.. .++++.. .+|+.+..+.. ..+.. ..+|+|+| +.+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT-----~~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT-----SVA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEE-----CC-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEe-----Cch
Confidence 46789999999999999999999861 2233333 34444443332 23333 37999999 333
Q ss_pred HccCCCCCCccEEEEeCc
Q 016712 237 KRNALNLSEVQFVVLDEA 254 (384)
Q Consensus 237 ~~~~~~~~~l~~vViDEa 254 (384)
..++++.++++||.=+.
T Consensus 705 -~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 -DEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred -hcCCcchhCCEEEEeCC
Confidence 34667889999887544
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=52.06 E-value=18 Score=29.77 Aligned_cols=15 Identities=40% Similarity=0.299 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhHH
Q 016712 138 DMIGRARTGTGKTLA 152 (384)
Q Consensus 138 d~li~a~TGsGKT~~ 152 (384)
-++++|++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999974
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=51.84 E-value=5.8 Score=35.32 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=26.6
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+-+++++||-=.-+|......+..++..+...-..++++
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 346889999888787766777777777775433344444
No 470
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=51.81 E-value=5.8 Score=34.92 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=25.9
Q ss_pred CccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 245 EVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 245 ~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
+-+++++||--.-+|......+..++..+...-..++++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 346889999888887766667777777764333344444
No 471
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=51.76 E-value=5.9 Score=35.40 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=29.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCC-CCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~-~~q~l~~S 283 (384)
+.+-+++++||--.-+|......+..++..+.. .-..++++
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 456689999999988887777778888888754 23344444
No 472
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=51.22 E-value=6 Score=34.89 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=25.1
Q ss_pred EEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 248 FVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 248 ~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
++++||--.-+|......+..++..+...-..++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 8999999888887666777777776633233444443
No 473
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.00 E-value=6.5 Score=38.59 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=29.5
Q ss_pred CCCCccCCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHH--hCCCcEEEEccCCCchhHHH
Q 016712 97 EGLDISKLDISQDIVAALARR--GISKLFPIQKAVLEPA--MQGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 97 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i--~~g~d~li~a~TGsGKT~~~ 153 (384)
+...|+++.-.+.....+.+. .+..+. .+..+ .-.+.+++.||+|+|||..+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHH
Confidence 446788876666666666542 111110 01000 01245999999999999854
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=50.92 E-value=6.2 Score=35.12 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
..+-+++++||--.-+|......+..++..+......++++.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vt 195 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 445678899998887777666677777666532223444443
No 475
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.88 E-value=6.2 Score=34.95 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=27.5
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
..+-+++++||--.-+|......+..++..+...-.+++++
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiiv 202 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45668899999988888766667777776664323344444
No 476
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=50.83 E-value=6.8 Score=36.15 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
=.+++||+|+|||...
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3579999999999963
No 477
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.70 E-value=5.2 Score=36.54 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=26.0
Q ss_pred CCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEE
Q 016712 244 SEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFS 283 (384)
Q Consensus 244 ~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~S 283 (384)
.+-+++|+||.=.-+|......+...+..+..+. ++++.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~i 245 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANR-TTIVV 245 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 3457899999988777666666666666654444 44443
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=50.65 E-value=8.7 Score=32.08 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|+-+++.|+.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4567999999999999754
No 479
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=50.62 E-value=6.2 Score=34.86 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=27.9
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCC-CcEEEEE
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQN-RQSMMFS 283 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~-~q~l~~S 283 (384)
..+-+++++||--.-+|......+..++..+... -..++++
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v 185 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456889999998888876777777777766432 2344444
No 480
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=50.44 E-value=6.4 Score=35.05 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCCccEEEEeCcccccCCChHHHHHHHHHHCCCCCcEEEEEc
Q 016712 243 LSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQSMMFSA 284 (384)
Q Consensus 243 ~~~l~~vViDEah~~~~~~~~~~~~~il~~l~~~~q~l~~SA 284 (384)
..+-+++++||-=.-+|......+..++..+...-..++++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vt 216 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 456689999999888887666777777776643333444443
No 481
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=50.41 E-value=7 Score=35.03 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-++++|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 482
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=50.39 E-value=7.1 Score=35.29 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+.|+|++|||||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.30 E-value=6.3 Score=41.18 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.++.+++.||+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4578999999999999854
No 484
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=49.81 E-value=4.3 Score=34.49 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=22.7
Q ss_pred ccEEEEeCcccccCCC-hHHHHHHHHHHCC----CCCcEEEEEcc
Q 016712 246 VQFVVLDEADQMLSVG-FAEDVEVILERLP----QNRQSMMFSAT 285 (384)
Q Consensus 246 l~~vViDEah~~~~~~-~~~~~~~il~~l~----~~~q~l~~SAT 285 (384)
-.+|||||||.+.... ...+...++..+. ...++++++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5589999999984321 1111112344432 34578887766
No 485
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=49.74 E-value=6.5 Score=35.33 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.0
Q ss_pred hCCCcEEEEccCCCchhHH
Q 016712 134 MQGRDMIGRARTGTGKTLA 152 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~ 152 (384)
..|.-+.+.||+|+|||..
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567788999999999983
No 486
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=49.73 E-value=1.1e+02 Score=28.95 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHh---CCCcEEEEccCCCchhHHH
Q 016712 122 LFPIQKAVLEPAM---QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 122 ~~~~Q~~~i~~i~---~g~d~li~a~TGsGKT~~~ 153 (384)
+-..=..+|+.+. .|..+.+.||+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3344456666644 6889999999999999854
No 487
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=49.63 E-value=5.4 Score=32.96 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
-+.++|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 488
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=49.55 E-value=21 Score=35.58 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=18.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 137 RDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 137 ~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
-+++|.|.||||||.+. ..++..+.
T Consensus 215 pHlLIaG~TGSGKS~~L-~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV-NAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CeeEEECCCCCCHHHHH-HHHHHHHH
Confidence 47999999999999853 44444443
No 489
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.41 E-value=11 Score=38.84 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
++++.||+|+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999865
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.38 E-value=16 Score=35.96 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=61.5
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccCCCCCCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKIIKFNEKHGRGRNPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISH 213 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (384)
..|.-+++.|++|+|||..... +.... . ..|..++++++... ..|+...+..++ +. ..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~-l~g~~-~-------~~G~~vi~~~~ee~-~~~l~~~~~~~g--~~---------~~~ 337 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSR-FVENA-C-------ANKERAILFAYEES-RAQLLRNAYSWG--MD---------FEE 337 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHH-HHHHH-H-------TTTCCEEEEESSSC-HHHHHHHHHTTS--CC---------HHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH-HHHHH-H-------hCCCCEEEEEEeCC-HHHHHHHHHHcC--CC---------HHH
Confidence 3456789999999999985432 22222 1 12445777776433 235554444322 11 111
Q ss_pred HHHHHhcC-CCEEEE-----CchhHHHHHHccCCCCCCccEEEEeCcccccCCC-----hHHHHHHHHHHCCC-CCcEEE
Q 016712 214 QMRALDYG-VDAVVG-----TPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVG-----FAEDVEVILERLPQ-NRQSMM 281 (384)
Q Consensus 214 ~~~~~~~~-~~IlV~-----Tp~~l~~~l~~~~~~~~~l~~vViDEah~~~~~~-----~~~~~~~il~~l~~-~~q~l~ 281 (384)
. ...+ .++.-. +.+.....+... ....+.++||+| -=.-++.. ....+..+++.+.. +.-+++
T Consensus 338 -~--~~~g~~~~~~~~p~~LS~g~~q~~~~a~-~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 338 -M--ERQNLLKIVCAYPESAGLEDHLQIIKSE-INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp -H--HHTTSEEECCCCGGGSCHHHHHHHHHHH-HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -H--HhCCCEEEEEeccccCCHHHHHHHHHHH-HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Confidence 0 0111 011101 223222222211 123467899999 43445555 56666666666543 455555
Q ss_pred EEccC
Q 016712 282 FSATM 286 (384)
Q Consensus 282 ~SAT~ 286 (384)
.|-..
T Consensus 413 vsh~~ 417 (525)
T 1tf7_A 413 TNTSD 417 (525)
T ss_dssp EEECS
T ss_pred EECcc
Confidence 55443
No 491
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=49.29 E-value=6.6 Score=34.20 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 016712 135 QGRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~ 153 (384)
.|.-+-+.||.|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4445778999999999854
No 492
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=48.84 E-value=11 Score=38.81 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEccCCCchhHHH
Q 016712 129 VLEPAMQGRD--MIGRARTGTGKTLAF 153 (384)
Q Consensus 129 ~i~~i~~g~d--~li~a~TGsGKT~~~ 153 (384)
.+..+++|.| ++.-|+||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5777889987 455699999999864
No 493
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=48.81 E-value=38 Score=30.81 Aligned_cols=66 Identities=8% Similarity=0.006 Sum_probs=39.3
Q ss_pred CCCccEEEEeCccc-ccCCChHHHHHHHHHHCCCCCcEEEEEccCChh--HHHHHHHhcCCCeEEEecCC
Q 016712 243 LSEVQFVVLDEADQ-MLSVGFAEDVEVILERLPQNRQSMMFSATMPPW--IRSLTNKYLKNPLTVDLVGD 309 (384)
Q Consensus 243 ~~~l~~vViDEah~-~~~~~~~~~~~~il~~l~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~~~~ 309 (384)
+.+-++|||||+|. +... ....+...++..++++-+|+.+.++.+. ...+..........+.+.+.
T Consensus 74 f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 46678999999998 6544 4455666666555566566555444331 23444554555566666443
No 494
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=48.69 E-value=8.2 Score=32.48 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999864
No 495
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.31 E-value=29 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=32.3
Q ss_pred HHHHHHhhcceEEEecCCCChhhhhchhhhhhcCCccc
Q 016712 346 TAWLMLWLKVIIVSLCMGISHKARGRGPFQLSEMDVSI 383 (384)
Q Consensus 346 ~~~~l~~~~~~v~~~hg~m~~~eR~~il~~F~~~~~~V 383 (384)
+...+.+.|+++..+.++-.++.|++-++.|-..-+||
T Consensus 18 ivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 18 IVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp HHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 34456678999999999999999999999998877765
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=48.21 E-value=9.5 Score=32.24 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 016712 136 GRDMIGRARTGTGKTLAF 153 (384)
Q Consensus 136 g~d~li~a~TGsGKT~~~ 153 (384)
+..+.+.|+.|||||...
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999964
No 497
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=48.16 E-value=10 Score=35.02 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCchhHHHHH
Q 016712 135 QGRDMIGRARTGTGKTLAFGI 155 (384)
Q Consensus 135 ~g~d~li~a~TGsGKT~~~~l 155 (384)
.|..+++.||+|+|||..++-
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 345679999999999985533
No 498
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.04 E-value=3.8 Score=38.04 Aligned_cols=71 Identities=13% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHH---hc-CCCEEEECchhHHHHHHccCCCCCCccE
Q 016712 173 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRAL---DY-GVDAVVGTPGRVIDLIKRNALNLSEVQF 248 (384)
Q Consensus 173 ~~~~lvl~Pt~~La~q~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~IlV~Tp~~l~~~l~~~~~~~~~l~~ 248 (384)
+.++||.++++.-+..+++.+++.. +.+..++|+.+..+....+ .+ ..+|+|+| +.+. .++++.++++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~Gldi~~~~~ 330 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC--CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEEC-----Chhh-cCCCcccCCE
Confidence 5679999999999999888887753 5666777776544433222 22 36899999 3333 3566777887
Q ss_pred EEE
Q 016712 249 VVL 251 (384)
Q Consensus 249 vVi 251 (384)
||.
T Consensus 331 Vi~ 333 (394)
T 1fuu_A 331 VIN 333 (394)
T ss_dssp ---
T ss_pred EEE
Confidence 764
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.98 E-value=14 Score=36.38 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=20.7
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHH
Q 016712 134 MQGRDMIGRARTGTGKTLAFGIPILDKII 162 (384)
Q Consensus 134 ~~g~d~li~a~TGsGKT~~~~lp~l~~l~ 162 (384)
..|.-+++.||+|+|||.....-++..+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999865443344443
No 500
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=47.92 E-value=8 Score=40.63 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHH
Q 016712 138 DMIGRARTGTGKTLAF 153 (384)
Q Consensus 138 d~li~a~TGsGKT~~~ 153 (384)
.+++.||+|+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999864
Done!