Query 016713
Match_columns 384
No_of_seqs 171 out of 888
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 1.3E-74 2.9E-79 563.3 15.8 370 1-381 108-480 (549)
2 COG4299 Uncharacterized protei 100.0 8.4E-59 1.8E-63 438.9 20.4 278 33-384 6-287 (371)
3 PF07786 DUF1624: Protein of u 99.8 6.5E-19 1.4E-23 165.0 17.3 113 34-158 1-118 (223)
4 COG2311 Predicted membrane pro 99.5 3E-13 6.4E-18 136.7 11.1 124 26-169 4-143 (394)
5 COG3503 Predicted membrane pro 99.4 4.8E-12 1E-16 123.0 12.8 119 33-163 14-137 (323)
6 PRK10835 hypothetical protein; 99.0 2.2E-09 4.7E-14 108.9 10.0 103 38-166 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.4 2.4E-05 5.2E-10 79.3 19.9 83 34-120 1-86 (358)
8 COG4645 Uncharacterized protei 98.0 6.6E-05 1.4E-09 74.7 11.3 85 26-114 15-102 (410)
9 PF06423 GWT1: GWT1; InterPro 97.7 0.00035 7.5E-09 61.5 9.7 89 289-378 3-100 (136)
10 PF01757 Acyl_transf_3: Acyltr 97.4 0.023 5E-07 53.1 18.4 82 36-117 2-89 (340)
11 PRK03854 opgC glucans biosynth 97.0 0.0053 1.2E-07 61.9 10.8 90 29-119 3-101 (375)
12 COG3274 Predicted O-acyltransf 92.2 0.59 1.3E-05 46.9 8.1 57 32-88 2-65 (332)
13 COG1835 Predicted acyltransfer 90.5 0.17 3.6E-06 51.3 2.4 69 26-100 6-76 (386)
14 COG3594 NolL Fucose 4-O-acetyl 83.8 1.6 3.4E-05 44.3 4.8 51 31-87 1-54 (343)
15 PF15345 TMEM51: Transmembrane 79.9 1.3 2.8E-05 42.4 2.4 55 326-380 10-86 (233)
16 TIGR02230 ATPase_gene1 F0F1-AT 47.1 59 0.0013 27.4 5.8 28 287-314 39-68 (100)
17 COG5062 Uncharacterized membra 41.3 98 0.0021 31.9 7.3 86 288-376 266-352 (429)
18 COG3619 Predicted membrane pro 40.9 1.5E+02 0.0032 28.6 8.2 57 64-122 50-106 (226)
19 PRK05771 V-type ATP synthase s 34.7 1.1E+02 0.0023 33.6 7.1 21 286-309 343-363 (646)
20 PF05857 TraX: TraX protein; 34.0 3.9E+02 0.0084 24.8 13.6 64 37-112 2-65 (219)
21 PF11654 DUF2665: Protein of u 33.3 52 0.0011 24.0 2.9 31 78-108 9-41 (47)
22 PF11255 DUF3054: Protein of u 30.4 3.4E+02 0.0075 23.1 8.8 79 287-370 24-106 (112)
23 PRK13706 conjugal transfer pil 29.8 1.2E+02 0.0025 29.7 5.6 82 19-112 15-96 (248)
24 PF10295 DUF2406: Uncharacteri 25.2 53 0.0012 25.9 1.9 26 15-45 39-64 (69)
25 PF10658 DUF2484: Protein of u 24.0 1.6E+02 0.0034 23.8 4.4 23 345-367 21-43 (77)
26 COG4763 Predicted membrane pro 23.9 21 0.00046 36.0 -0.6 60 27-89 14-77 (388)
27 COG0598 CorA Mg2+ and Co2+ tra 23.0 6.3E+02 0.014 25.0 9.7 67 295-366 238-308 (322)
28 PRK11462 putative transporter; 21.7 2.5E+02 0.0054 29.0 6.7 75 297-377 54-128 (460)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-74 Score=563.28 Aligned_cols=370 Identities=41% Similarity=0.721 Sum_probs=335.2
Q ss_pred CcccccccccCCCcccCCCCcchhhhc--cccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCcchhhHHHHHH
Q 016713 1 MSEIKAETTHHHPLIISEPDVSDQQEK--SHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMP 78 (384)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~l~ha~w~G~~~~DlvfP 78 (384)
|.|||.|..|.|-+--...|.|.-+++ .++.++|+.|+|++||+++++||+||+.|+.||+.+|++|||++++|.|||
T Consensus 108 ~~~ik~~~~~d~~~~E~k~~~ss~~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmP 187 (549)
T KOG4683|consen 108 ALKIKSCAWRDYRYDEAKAAASSIGEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMP 187 (549)
T ss_pred HHHHhhccchhhhhccchhhhhhhhhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHH
Confidence 458899988887765443344433333 355568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCcccccchhhhhHHHHHHHHHHHHHH
Q 016713 79 FFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (384)
Q Consensus 79 ~Flfi~G~si~ls~~~~~~k~~~~~~i~~R~~~Lf~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLqrIgl~Y~~~all 158 (384)
+|+|++|+|+++++++...|....||.--|..+|++.|+++++++.|+.+.+|++.|.+++|++|||||+|++|+++|++
T Consensus 188 fFLfIvGVsials~K~~s~rf~a~rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~ 267 (549)
T KOG4683|consen 188 FFLFIVGVSIALSVKSQSSRFSATRKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAIL 267 (549)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHhccCcccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcccCCCccccccCCCCCcCcccceeccccCCCCC-Cc
Q 016713 159 EIFTKDVQDKDQSVGRFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNP-PC 237 (384)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~y~~l~~~l~vp~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~-~~ 237 (384)
..+..++. +++ ..||.++..+.|..|.+..|+.+||+|.+...+...+.+++.|.+.|+.+|...+ .|
T Consensus 268 ~~~~~~~~-~~~----------~S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~C 336 (549)
T KOG4683|consen 268 HTLCCRPI-SPQ----------RSWQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKC 336 (549)
T ss_pred hhhccCCC-ccc----------cchhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCc
Confidence 98776542 211 2366788888888899888888899998888887778888999999988888866 59
Q ss_pred cHHHHHHHHhcCccccccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHhhccc
Q 016713 238 NAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKG 317 (384)
Q Consensus 238 n~a~~iDr~vlg~~Hly~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~fDPEGlLstl~ai~~~llG~~aG~~L~~~~~ 317 (384)
|+++|.||+++|++|||++|+|+|.++|+.++|++|+++.|+|+||..|||||||+|++.|++++++|+++|+++.+.+.
T Consensus 337 nAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~ 416 (549)
T KOG4683|consen 337 NAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKN 416 (549)
T ss_pred cchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHhccccC
Q 016713 318 HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDCNIFG 381 (384)
Q Consensus 318 ~~~~~~~ll~~G~~ll~~G~~l~~~~~~PInK~lWT~Sfvl~t~G~s~llla~ly~liDv~~~~ 381 (384)
+..|+++|...++++.++|..+++...+|+||+|||.||+++|+|.+.+++..+|++|||+.|+
T Consensus 417 ~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~ 480 (549)
T KOG4683|consen 417 FQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREWS 480 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 9999999999999999999999877678999999999999999999999999999999999854
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8.4e-59 Score=438.87 Aligned_cols=278 Identities=31% Similarity=0.463 Sum_probs=246.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhccC---CCcccccccCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 016713 33 QRLASLDIFRGLAVALMILVDHAG---GDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (384)
Q Consensus 33 ~Ri~sLD~lRGlai~~Milvn~~g---~~~~~l~ha~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~~~~i~~R~ 109 (384)
.|+.|+|++||+++++||+||+.+ ..|+++.|++|.|+|.+|+|||.|+|++|.++++|.+|..+.+....++.||.
T Consensus 6 ~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RRa 85 (371)
T COG4299 6 FRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRRA 85 (371)
T ss_pred hhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHHH
Confidence 799999999999999999999976 37899999999999999999999999999999999988777777889999999
Q ss_pred HHHHHHHHHHhhcCCCCCCccccCcc-cccchhhhhHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhHHHHHHHH
Q 016713 110 LKLLFWGILLQGGFSHAPDELTYGVD-VRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLMA 188 (384)
Q Consensus 110 ~~Lf~lG~~~~~~~~~~~~~~~~~~~-~~~~r~~gVLqrIgl~Y~~~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (384)
..+|++|++++.+... . .|.++ .+..|.+||||||++||+++++...+.+. ++|++.+
T Consensus 86 a~~f~Lg~Lm~~F~~~-~---~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~la 144 (371)
T COG4299 86 AERFALGYLMGAFVTV-R---DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALLA 144 (371)
T ss_pred HHHHHHHHHhhhcccc-c---eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHHH
Confidence 9999999999865221 1 12344 67899999999999999999998876643 4899999
Q ss_pred HHHHHHHHHHHHhcccCCCccccccCCCCCcCcccceeccccCCCCCCccHHHHHHHHhcCccccccCCcccccccCCCC
Q 016713 189 ACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQD 268 (384)
Q Consensus 189 ~~lL~~y~~l~~~l~vp~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~n~a~~iDr~vlg~~Hly~~p~~~~~~~~~~~ 268 (384)
+++|++||.++...++|+.| ++..+|..+++|+...+.+|+|..
T Consensus 145 avLL~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~------------ 188 (371)
T COG4299 145 AVLLAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSA------------ 188 (371)
T ss_pred HHHHHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcc------------
Confidence 99999999988777777632 334578999999999999999973
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 016713 269 SPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLN 348 (384)
Q Consensus 269 ~~~~g~~~~~~~~~~~~~fDPEGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~ll~~G~~ll~~G~~l~~~~~~PIn 348 (384)
+ ..|||||++||+|++++++.|++++|.+++++.+.+....+.++|++++++|+.|.. .+|||
T Consensus 189 ---d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi~ 251 (371)
T COG4299 189 ---D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPIS 251 (371)
T ss_pred ---c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--ccccc
Confidence 1 248999999999999999999999999998877777777889999999999999985 59999
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 016713 349 KQLYTLSYVCVTSGAAALVFSAIYALVDCNIFGPWT 384 (384)
Q Consensus 349 K~lWT~Sfvl~t~G~s~llla~ly~liDv~~~~~w~ 384 (384)
|++||||||++|+|+..++++.||.++|.+.-|+|+
T Consensus 252 KkLWTssyvl~t~G~~llllaac~~l~e~~~~kr~~ 287 (371)
T COG4299 252 KKLWTSSYVLYTAGLGLLLLAACWVLAESPGGKRLL 287 (371)
T ss_pred hhhcCCceeehhhhHHHHHHHHHHHHHcCcccCcCc
Confidence 999999999999999999999999999999999885
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.81 E-value=6.5e-19 Score=164.96 Aligned_cols=113 Identities=33% Similarity=0.415 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCC-Cc-cccc-cc--CCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 016713 34 RLASLDIFRGLAVALMILVDHAGG-DW-PEIS-HA--PWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (384)
Q Consensus 34 Ri~sLD~lRGlai~~Milvn~~g~-~~-~~l~-ha--~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~~~~i~~R 108 (384)
|+.++|++||+|+++|+++|.... .+ +..+ +. .+....+.|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998753 11 1111 21 233457789999999999999999999887766 788999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccCcccccchhhhhHHHHHHHHHHHHHH
Q 016713 109 TLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (384)
Q Consensus 109 ~~~Lf~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLqrIgl~Y~~~all 158 (384)
++.|+++|++++.... ....+...++||||+||+++++++++
T Consensus 77 ~~~l~~~g~~i~~~~~--------~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLTF--------FFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHHH--------HhcCCceeehhHHHHHHHHHHHHHHH
Confidence 9999999999876411 11234455779999999999988876
No 4
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.46 E-value=3e-13 Score=136.73 Aligned_cols=124 Identities=27% Similarity=0.470 Sum_probs=96.4
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCccc----ccccCC-cch-----hhHHH-----HHHHHHHHHHHHHHH
Q 016713 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE----ISHAPW-NGC-----NLADF-----VMPFFLFIVGVAIAL 90 (384)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~----l~ha~w-~G~-----~~~Dl-----vfP~Flfi~G~si~l 90 (384)
++|+.+++|+.++|++||+|+++++++|.....+|- ..+..| .+. -+.|. +.|+|.|++|+++.+
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~ 83 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAM 83 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 678888999999999999999999999987554431 112222 111 22233 489999999999999
Q ss_pred HhccCCchhHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCccccCcccccchhhhhHHHHHHHHHHHHHHHHHhccCcccc
Q 016713 91 ALKRIPDRADA-VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKD 169 (384)
Q Consensus 91 s~~~~~~k~~~-~~~i~~R~~~Lf~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLqrIgl~Y~~~all~l~~~~~~~~~ 169 (384)
.++|+.+|++. ....+||...|+++|++|..++|+ | ||| +.|.+++++.+.+++.++|.
T Consensus 84 ~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~-------G---------DIL----~~Ya~~g~ill~~~~~~~k~ 143 (394)
T COG2311 84 MLRRAARKGRRWVALYARRLLLLLLLGLIHALFIWD-------G---------DIL----LAYALTGLILLLFRRRKPKT 143 (394)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc-------c---------hHH----HHHHHHHHHHHHHHhccccH
Confidence 99998888754 455799999999999999876442 3 899 89999999999998887663
No 5
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.37 E-value=4.8e-12 Score=122.95 Aligned_cols=119 Identities=27% Similarity=0.356 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCC-C-cccccccCC-cc--hhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Q 016713 33 QRLASLDIFRGLAVALMILVDHAGG-D-WPEISHAPW-NG--CNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIF 107 (384)
Q Consensus 33 ~Ri~sLD~lRGlai~~Milvn~~g~-~-~~~l~ha~w-~G--~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~~~~i~~ 107 (384)
+|+.+||++||++|+.|++-|...+ . ....+-+.- .| ..++..+.|.|+|++|+|..++-+|+.+| .++.+|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999986543 1 112222111 12 35788999999999999999998776653 788999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccCcccccchhhhhHHHHHHHHHHHHHHHHHhc
Q 016713 108 RTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTK 163 (384)
Q Consensus 108 R~~~Lf~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLqrIgl~Y~~~all~l~~~ 163 (384)
|.+.|..+++.+... +|..-++++.++|||+.||++.++...+ +|++
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~f-l~lP 137 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAF-LWLP 137 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHH-HhCc
Confidence 999999999999875 2211247788999999999999877654 4444
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.97 E-value=2.2e-09 Score=108.87 Aligned_cols=103 Identities=23% Similarity=0.288 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCccc-------ccc--cCCcc-------hhhHHHHHHHHHHHHHHHHHHHhccCCchhHH
Q 016713 38 LDIFRGLAVALMILVDHAGGDWPE-------ISH--APWNG-------CNLADFVMPFFLFIVGVAIALALKRIPDRADA 101 (384)
Q Consensus 38 LD~lRGlai~~Milvn~~g~~~~~-------l~h--a~w~G-------~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~ 101 (384)
+|++||+|+++++++|......+. ..+ +.+|. +.+-..++|+|.+++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999965332211 111 11121 1223556899999999999999874322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccccCcccccchhhhhHHHHHHHHHHHHHHHHHhccCc
Q 016713 102 VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (384)
Q Consensus 102 ~~~i~~R~~~Lf~lG~~~~~~~~~~~~~~~~~~~~~~~r~~gVLqrIgl~Y~~~all~l~~~~~~ 166 (384)
...||+..|+++|++|...+++ + ||| ..|.+++++.+++.+.+
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~-------G---------DIL----~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWD-------G---------DIL----LAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcc-------c---------hHH----HHHHHHHHHHHHHHhcc
Confidence 3569999999999999754332 2 899 68888888888887753
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.43 E-value=2.4e-05 Score=79.27 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchh---HHHHHHHHHHH
Q 016713 34 RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA---DAVKKVIFRTL 110 (384)
Q Consensus 34 Ri~sLD~lRGlai~~Milvn~~g~~~~~l~ha~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~---~~~~~i~~R~~ 110 (384)
|...||.+||++++.|.+-|.+++.+..+++.++ +++|- ...|+|++|++..+.+.|+.+|. ...+|++||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 7788999999999665554544544444444443 56663 47899999999999998765442 45788999998
Q ss_pred HHHHHHHHHh
Q 016713 111 KLLFWGILLQ 120 (384)
Q Consensus 111 ~Lf~lG~~~~ 120 (384)
.|..--+.+.
T Consensus 77 ~lY~a~i~l~ 86 (358)
T PF10129_consen 77 QLYVAHIALF 86 (358)
T ss_pred HHHHHHHHHH
Confidence 8876655443
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=6.6e-05 Score=74.75 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=62.7
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchh-H--HH
Q 016713 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA-D--AV 102 (384)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~l~ha~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~-~--~~ 102 (384)
++.+-..+|+..||++||++++.|.+-|.++..+..++|.+. .+.|- ...|+|++|+++.+.+.|+.-++ + ..
T Consensus 15 ~~~~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~ 90 (410)
T COG4645 15 ERRAVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGT 90 (410)
T ss_pred ccccCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHH
Confidence 344455689999999999999777554445544445667554 55553 36899999999999998876543 2 35
Q ss_pred HHHHHHHHHHHH
Q 016713 103 KKVIFRTLKLLF 114 (384)
Q Consensus 103 ~~i~~R~~~Lf~ 114 (384)
.|+++|+..|..
T Consensus 91 lkiWrRA~~LY~ 102 (410)
T COG4645 91 LKIWRRAMVLYV 102 (410)
T ss_pred HHHHHHHHHHHH
Confidence 689999999987
No 9
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.66 E-value=0.00035 Score=61.54 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=68.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhccchH---------HHHHHHHHHHHHHHHHHHHhhhcCCCCCcccCCChhHHHH
Q 016713 289 PEGLLSSVSSILSTIIGVHFGHVIIHTKGHL---------ARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCV 359 (384)
Q Consensus 289 PEGlLstl~ai~~~llG~~aG~~L~~~~~~~---------~~~~~ll~~G~~ll~~G~~l~~~~~~PInK~lWT~Sfvl~ 359 (384)
-||++|....++-=++|+..|+.+...+... ++..+++.+.+++.++-.+++.. ..|+|+++...+||+.
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSY-IEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHhcchHHHHH
Confidence 5999999999999999999999986543322 33344566666666666666543 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 016713 360 TSGAAALVFSAIYALVDCN 378 (384)
Q Consensus 360 t~G~s~llla~ly~liDv~ 378 (384)
+.+.....++.++.+-++.
T Consensus 82 v~a~n~~~l~~~~~i~~~~ 100 (136)
T PF06423_consen 82 VLAFNTFFLALYLLIELLL 100 (136)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999998888766655544
No 10
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.36 E-value=0.023 Score=53.11 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccc-ccccCCcc--h---hhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 016713 36 ASLDIFRGLAVALMILVDHAGGDWPE-ISHAPWNG--C---NLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (384)
Q Consensus 36 ~sLD~lRGlai~~Milvn~~g~~~~~-l~ha~w~G--~---~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~~~~i~~R~ 109 (384)
.++|.+||++++++++.|........ ........ . .......|+|.+++|+.+....+++++..+..+|-++|.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 58999999999999998876421110 01100000 0 455667899999999999811112222223344444455
Q ss_pred HHHHHHHH
Q 016713 110 LKLLFWGI 117 (384)
Q Consensus 110 ~~Lf~lG~ 117 (384)
...+++..
T Consensus 82 ~~~~~~~~ 89 (340)
T PF01757_consen 82 LIPYLFWS 89 (340)
T ss_pred hHHHHHHH
Confidence 44444433
No 11
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=96.99 E-value=0.0053 Score=61.92 Aligned_cols=90 Identities=20% Similarity=0.144 Sum_probs=57.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhccC--CCccc----ccccCCcch--hhHH-HHHHHHHHHHHHHHHHHhccCCchh
Q 016713 29 HLKTQRLASLDIFRGLAVALMILVDHAG--GDWPE----ISHAPWNGC--NLAD-FVMPFFLFIVGVAIALALKRIPDRA 99 (384)
Q Consensus 29 ~~~~~Ri~sLD~lRGlai~~Milvn~~g--~~~~~----l~ha~w~G~--~~~D-lvfP~Flfi~G~si~ls~~~~~~k~ 99 (384)
+++++|...+|.+||+++++.++.|... ...++ .+.+.|.+. ...+ ..+|+|.+++|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 4456899999999999999999888642 11111 111222111 1111 348999999999988876544 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016713 100 DAVKKVIFRTLKLLFWGILL 119 (384)
Q Consensus 100 ~~~~~i~~R~~~Lf~lG~~~ 119 (384)
+..++=++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 56666778877777776543
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=92.22 E-value=0.59 Score=46.87 Aligned_cols=57 Identities=18% Similarity=0.384 Sum_probs=40.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccCC-Cccc-ccc-cCC---cch-hhHHHHHHHHHHHHHHHH
Q 016713 32 TQRLASLDIFRGLAVALMILVDHAGG-DWPE-ISH-APW---NGC-NLADFVMPFFLFIVGVAI 88 (384)
Q Consensus 32 ~~Ri~sLD~lRGlai~~Milvn~~g~-~~~~-l~h-a~w---~G~-~~~DlvfP~Flfi~G~si 88 (384)
.+|+.++|.+|++|++..+.+|.... .+.. ..| +.| |++ +..-.+-|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999988888887642 1211 122 224 443 566678999999999754
No 13
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=90.50 E-value=0.17 Score=51.34 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=45.0
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCC--cchhhHHHHHHHHHHHHHHHHHHHhccCCchhH
Q 016713 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPW--NGCNLADFVMPFFLFIVGVAIALALKRIPDRAD 100 (384)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~l~ha~w--~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~ 100 (384)
...+..++|+.++|.+||++.++.++.|......+. +..+ +|..-.| +|..++|+.+.-...++.++++
T Consensus 6 ~~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~~g~~gVd----iFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 6 TAINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVGRGVLGVD----LFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccccccccee----EeeeccHHHHHHHHHHHhhcCC
Confidence 334445789999999999999888888865432110 1111 2222233 6889999999998866555444
No 14
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=83.84 E-value=1.6 Score=44.33 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=37.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCcc---hhhHHHHHHHHHHHHHHH
Q 016713 31 KTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNG---CNLADFVMPFFLFIVGVA 87 (384)
Q Consensus 31 ~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~l~ha~w~G---~~~~DlvfP~Flfi~G~s 87 (384)
+++|..++|+.||+-|++.++-|..+...+ |.- ..+.-.-+|+|.|++|+-
T Consensus 1 ~~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 1 MKKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred CchhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 368999999999999999999887543221 322 123344489999999985
No 15
>PF15345 TMEM51: Transmembrane protein 51
Probab=79.88 E-value=1.3 Score=42.44 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCC----------------------cccCCChhHHHHHHHHHHHHHHHHHHHHhcccc
Q 016713 326 VTMGFALLIFGLTLHFTNAIPL----------------------NKQLYTLSYVCVTSGAAALVFSAIYALVDCNIF 380 (384)
Q Consensus 326 l~~G~~ll~~G~~l~~~~~~PI----------------------nK~lWT~Sfvl~t~G~s~llla~ly~liDv~~~ 380 (384)
-.+|+.|+++|.++-.|+++|= .++=-|.-|||+.+|+++|+|++|.-+=|-++.
T Consensus 10 ~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 10 TAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred HHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888887755533442 122346679999999999999999999886553
No 16
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=47.09 E-value=59 Score=27.36 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=19.4
Q ss_pred CCccchhhhHH--HHHHHHHHHHHHHHHhh
Q 016713 287 FEPEGLLSSVS--SILSTIIGVHFGHVIIH 314 (384)
Q Consensus 287 fDPEGlLstl~--ai~~~llG~~aG~~L~~ 314 (384)
+.--|++|++. -++.+++|+..|++|-+
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677664 45678888888888854
No 17
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=41.33 E-value=98 Score=31.94 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=53.7
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHhhccchHHHHHH-HHHHHHHHHHHHHHhhhcCCCCCcccCCChhHHHHHHHHHHH
Q 016713 288 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQ-WVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 366 (384)
Q Consensus 288 DPEGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~-ll~~G~~ll~~G~~l~~~~~~PInK~lWT~Sfvl~t~G~s~l 366 (384)
.-|||.+.+|-+..-+.|.-.|++...++..+++-++ |...-+..+.+=.+.++.. .. ++++....||+...-+-.+
T Consensus 266 NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf~s-~s-sRRlaNlpfv~wi~~lh~f 343 (429)
T COG5062 266 NREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNFYS-TS-SRRLANLPFVMWIMLLHTF 343 (429)
T ss_pred chhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhhcc-cc-hhhhcCccHHHHHHHHHHH
Confidence 7799999999999999999999998655443333332 2222122222222224331 23 8899999999988665444
Q ss_pred HHHHHHHHHh
Q 016713 367 VFSAIYALVD 376 (384)
Q Consensus 367 lla~ly~liD 376 (384)
....|.+.|
T Consensus 344 -~lt~y~lfd 352 (429)
T COG5062 344 -HLTVYELFD 352 (429)
T ss_pred -Hhheeeeee
Confidence 333455555
No 18
>COG3619 Predicted membrane protein [Function unknown]
Probab=40.94 E-value=1.5e+02 Score=28.56 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=41.4
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 016713 64 HAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGG 122 (384)
Q Consensus 64 ha~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~~~~i~~R~~~Lf~lG~~~~~~ 122 (384)
-++++.....+...|++.|++|+.+.-.++|+..| .....+.+...++.+++.....
T Consensus 50 l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 50 LAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 34455566788899999999999998888776655 3344566777777777766543
No 19
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.71 E-value=1.1e+02 Score=33.58 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=11.2
Q ss_pred CCCccchhhhHHHHHHHHHHHHHH
Q 016713 286 PFEPEGLLSSVSSILSTIIGVHFG 309 (384)
Q Consensus 286 ~fDPEGlLstl~ai~~~llG~~aG 309 (384)
-.||.-++.-. ...+.|+..|
T Consensus 343 EiDPT~~~ai~---f~lfFGmM~g 363 (646)
T PRK05771 343 EIDPTPFLAIF---FPLFFGMMLG 363 (646)
T ss_pred CcCCccHHHHH---HHHHHHHHHH
Confidence 36997776532 2234555444
No 20
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=33.97 E-value=3.9e+02 Score=24.78 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Q 016713 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKL 112 (384)
Q Consensus 37 sLD~lRGlai~~Milvn~~g~~~~~l~ha~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k~~~~~~i~~R~~~L 112 (384)
|-|.+.=+|++.|++-|.. ... ....+| -..+.-+.||+|.|+..-++.- .++.+|..+|....
T Consensus 2 s~~~LK~iA~i~M~iDHi~-~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~~ 65 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIG-FLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLIF 65 (219)
T ss_pred chhHHHHHHHHHHHHHhhc-ccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4688889999999886654 211 122222 1236678899999999877654 23345666665443
No 21
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=33.26 E-value=52 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhccCCch--hHHHHHHHHH
Q 016713 78 PFFLFIVGVAIALALKRIPDR--ADAVKKVIFR 108 (384)
Q Consensus 78 P~Flfi~G~si~ls~~~~~~k--~~~~~~i~~R 108 (384)
|+|...+|++-++..+++..+ ++....+++|
T Consensus 9 P~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 889999999999999876543 4455554443
No 22
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.41 E-value=3.4e+02 Score=23.09 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=43.8
Q ss_pred CCccchhhhH-HHHHHHHHHHHHHHHHhhc-cchHHHHHHHH--HHHHHHHHHHHHhhhcCCCCCcccCCChhHHHHHHH
Q 016713 287 FEPEGLLSSV-SSILSTIIGVHFGHVIIHT-KGHLARLKQWV--TMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSG 362 (384)
Q Consensus 287 fDPEGlLstl-~ai~~~llG~~aG~~L~~~-~~~~~~~~~ll--~~G~~ll~~G~~l~~~~~~PInK~lWT~Sfvl~t~G 362 (384)
.+|.|++.|. |.++-.++|.......++. ++..++..... .| +.-..+|+++.- . .+...-.+||++++.+
T Consensus 24 ~~~~~~l~Ta~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W-~~a~~vG~~LR~---~-~~~~~~~~~FiiVa~~ 98 (112)
T PF11255_consen 24 LSPAGVLRTAWPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVW-LVAVPVGMALRA---L-LFGGGPAWSFIIVALV 98 (112)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH-HHHHHHHHHHHH---H-HhCCCCCcchHHHHHH
Confidence 5788888876 6655554444444343321 12223332211 12 233556777653 1 3445556899999998
Q ss_pred HHHHHHHH
Q 016713 363 AAALVFSA 370 (384)
Q Consensus 363 ~s~llla~ 370 (384)
...+++..
T Consensus 99 ~~~vlL~g 106 (112)
T PF11255_consen 99 FLAVLLLG 106 (112)
T ss_pred HHHHHHHH
Confidence 88877653
No 23
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=29.76 E-value=1.2e+02 Score=29.70 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=44.1
Q ss_pred CCcchhhhccccccchhHHHHHHHHHHHHHHHHHhccCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHHhccCCch
Q 016713 19 PDVSDQQEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDR 98 (384)
Q Consensus 19 ~~~~~~~~~~~~~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~l~ha~w~G~~~~DlvfP~Flfi~G~si~ls~~~~~~k 98 (384)
|.+.|++.|+-- +-=--++|.+.=++++.|.+-|.... .+ ....|- ..+.-+.||+|.|.-|+=++.-
T Consensus 15 ~~~~~~~~~~~l-~~~~g~~dlLK~IAli~M~iDHi~~~-~~--~~~~~l-~~iGRlAfPiFafVeGfNla~h------- 82 (248)
T PRK13706 15 AARTDTWLQSLL-VWSPGQRDIIKTVALVLMVLDHINRI-LH--LDQEWM-FLAGRGAFPLFALVWGLNLSRH------- 82 (248)
T ss_pred hhhhhhhHHHHh-cCCcchhHHHHHHHHHHHHHHHHHHH-hC--CcHHHH-HHHHHHHHHHHHHHHHHhhccc-------
Confidence 444555555411 01123579999999999998664321 11 111120 1356678999999666533221
Q ss_pred hHHHHHHHHHHHHH
Q 016713 99 ADAVKKVIFRTLKL 112 (384)
Q Consensus 99 ~~~~~~i~~R~~~L 112 (384)
.+..+|..+|....
T Consensus 83 T~~r~kY~~RL~if 96 (248)
T PRK13706 83 AHIRQPAINRLWGW 96 (248)
T ss_pred cchHHHHHHHHHHH
Confidence 12345566665444
No 24
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=25.19 E-value=53 Score=25.87 Aligned_cols=26 Identities=27% Similarity=0.495 Sum_probs=17.7
Q ss_pred ccCCCCcchhhhccccccchhHHHHHHHHHH
Q 016713 15 IISEPDVSDQQEKSHLKTQRLASLDIFRGLA 45 (384)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~Ri~sLD~lRGla 45 (384)
.|.+||.|..+-..- + .=||..|||=
T Consensus 39 ~I~~PD~SNPTR~R~---E--RPLDTIRsFE 64 (69)
T PF10295_consen 39 PITDPDRSNPTRSRD---E--RPLDTIRSFE 64 (69)
T ss_pred ccCCCCCCCCCcccc---c--CchHHHHHHH
Confidence 578999987543322 2 3589999984
No 25
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=23.98 E-value=1.6e+02 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=16.5
Q ss_pred CCCcccCCChhHHHHHHHHHHHH
Q 016713 345 IPLNKQLYTLSYVCVTSGAAALV 367 (384)
Q Consensus 345 ~PInK~lWT~Sfvl~t~G~s~ll 367 (384)
.|...+.|++.|+|+..|.-++.
T Consensus 21 LP~rd~hw~~a~~Lia~g~pLlg 43 (77)
T PF10658_consen 21 LPSRDNHWRPAYVLIAAGIPLLG 43 (77)
T ss_pred cCchhhcchhHHHHHHHHhhHhh
Confidence 47777888888888877765543
No 26
>COG4763 Predicted membrane protein [Function unknown]
Probab=23.89 E-value=21 Score=35.98 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhccCCCccc---ccccCCcchhhHHHH-HHHHHHHHHHHHH
Q 016713 27 KSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE---ISHAPWNGCNLADFV-MPFFLFIVGVAIA 89 (384)
Q Consensus 27 ~~~~~~~Ri~sLD~lRGlai~~Milvn~~g~~~~~---l~ha~w~G~~~~Dlv-fP~Flfi~G~si~ 89 (384)
..+.+|+|..-+|...|+.|++.++.|..-..|+. +.|-- + .+.|-+ +|.|..+.|.-..
T Consensus 14 gfamnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~l-~--~~l~p~rmP~Ffl~sg~F~~ 77 (388)
T COG4763 14 GFAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHPL-S--EVLSPCRMPYFFLYSGPFRM 77 (388)
T ss_pred ccccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhHH-H--HhhchhhhHHHHHHhhHHHh
Confidence 33455899999999999999888887765433431 22211 1 233333 7888888886433
No 27
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.97 E-value=6.3e+02 Score=25.02 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhhcC----CCCCcccCCChhHHHHHHHHHHH
Q 016713 295 SVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTN----AIPLNKQLYTLSYVCVTSGAAAL 366 (384)
Q Consensus 295 tl~ai~~~llG~~aG~~L~~~~~~~~~~~~ll~~G~~ll~~G~~l~~~~----~~PInK~lWT~Sfvl~t~G~s~l 366 (384)
+.....+.+.....+.+ ..+.++.++.+.+++++++..-++-++.| .+|-.+.-| .|-++++...++
T Consensus 238 ~~~~~l~~l~d~~~s~i---s~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~--Gy~~~l~~m~~~ 308 (322)
T COG0598 238 ALRERLSSLLDAYLSLI---NNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPY--GYPIALILMLLL 308 (322)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcc--cHHHHHHHHHHH
Confidence 33444455555565543 23344455566678888876666655432 456666555 555555443333
No 28
>PRK11462 putative transporter; Provisional
Probab=21.72 E-value=2.5e+02 Score=29.01 Aligned_cols=75 Identities=15% Similarity=0.323 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccCCChhHHHHHHHHHHHHHHHHHHHHh
Q 016713 297 SSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVD 376 (384)
Q Consensus 297 ~ai~~~llG~~aG~~L~~~~~~~~~~~~ll~~G~~ll~~G~~l~~~~~~PInK~lWT~Sfvl~t~G~s~llla~ly~liD 376 (384)
+-+.-++.--..|.+-.+.+++..|.+.|+.+|.+.+.+++.+-+. .| . |+.+-.++=.....+++.++|-+++
T Consensus 54 ~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~--~p-~---~s~~~~~~y~~~~~~~~~~~~t~~~ 127 (460)
T PRK11462 54 ARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS--TP-D---LSMNGKMIYAAITYTLLTLLYTVVN 127 (460)
T ss_pred HHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh--CC-C---CCcchHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445566665555555556666888887776666666543 35 2 4433322223444556677777777
Q ss_pred c
Q 016713 377 C 377 (384)
Q Consensus 377 v 377 (384)
+
T Consensus 128 i 128 (460)
T PRK11462 128 I 128 (460)
T ss_pred c
Confidence 5
Done!