Query 016713
Match_columns 384
No_of_seqs 171 out of 888
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 18.3 5.3E+02 0.018 24.1 9.5 60 318-383 275-338 (339)
2 1p58_A Major envelope protein 14.5 2.1E+02 0.007 29.3 5.5 65 289-369 425-490 (495)
3 3n2f_G Na+/K+ ATPase gamma sub 13.6 54 0.0019 20.9 0.7 28 64-91 4-31 (31)
4 3p5n_A RIBU, riboflavin uptake 13.5 6.2E+02 0.021 21.7 8.9 51 289-341 82-132 (189)
5 4ar0_A Type IV pilus biogenesi 12.9 1.1E+02 0.0039 25.2 2.6 11 8-18 4-14 (128)
6 2w7q_A Outer-membrane lipoprot 10.6 10 0.00034 33.3 -5.0 10 6-15 1-10 (204)
7 2iub_A CORA, divalent cation t 10.5 6.8E+02 0.023 23.6 7.8 60 318-383 299-362 (363)
8 2jo1_A Phospholemman; FXYD1, N 10.3 2.4E+02 0.0082 21.3 3.4 30 64-93 10-39 (72)
9 2jp3_A FXYD domain-containing 9.3 2.2E+02 0.0075 21.3 2.8 30 64-93 11-40 (67)
10 2zxe_G FXYD10, phospholemman-l 8.6 2.1E+02 0.007 21.8 2.5 30 64-93 13-42 (74)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=18.28 E-value=5.3e+02 Score=24.09 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC----CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 016713 318 HLARLKQWVTMGFALLIFGLTLHFTN----AIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDCNIFGPW 383 (384)
Q Consensus 318 ~~~~~~~ll~~G~~ll~~G~~l~~~~----~~PInK~lWT~Sfvl~t~G~s~llla~ly~liDv~~~~~w 383 (384)
.++.++.+.+++++++...++-++.| .+|--+ |.-.|..+.+....+ -+++|++ .+.|+|
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~gy~~~l~~m~~~-~~~~~~~---fkrk~W 338 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN--NPQGFWLVMALMVVI-IMIFVYI---FRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS--CTTHHHHHHHHHHHH-HHHHHHH---HHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc--CchHHHHHHHHHHHH-HHHHHHH---HHHcCC
Confidence 34455556677777766666655442 245544 555666655444333 3344443 345667
No 2
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=14.54 E-value=2.1e+02 Score=29.33 Aligned_cols=65 Identities=20% Similarity=0.418 Sum_probs=41.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HHHHHHhhhcCCCCCcccCCChhHHHHHHHHHHHH
Q 016713 289 PEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFAL-LIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALV 367 (384)
Q Consensus 289 PEGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~ll~~G~~l-l~~G~~l~~~~~~PInK~lWT~Sfvl~t~G~s~ll 367 (384)
.-|+++++.=.++..+|-.+..++- .++-+. +++|.++- ++.+|.+--|.|-+++..|.-++.
T Consensus 425 ~gg~f~sigKavh~vfg~~F~~lFG-------------G~sw~~kilig~ll~---WlG~n~rn~t~s~~~l~~G~ill~ 488 (495)
T 1p58_A 425 LGGVFTSIGKALHQVFGAIYGAAFS-------------GVSWTMKILIGVIIT---WIGMNSRSTSLSVSLVLVGIVTLY 488 (495)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhc-------------chHHHHHHHHHHHHh---eEEeccCCchHHHHHHHHHHHhhe
Confidence 3477888876666766666554431 111111 23344433 369999999999999999977776
Q ss_pred HH
Q 016713 368 FS 369 (384)
Q Consensus 368 la 369 (384)
|+
T Consensus 489 l~ 490 (495)
T 1p58_A 489 LG 490 (495)
T ss_pred ee
Confidence 65
No 3
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=13.64 E-value=54 Score=20.92 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.0
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHH
Q 016713 64 HAPWNGCNLADFVMPFFLFIVGVAIALA 91 (384)
Q Consensus 64 ha~w~G~~~~DlvfP~Flfi~G~si~ls 91 (384)
|-+|+......+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 3456666677777778888888877653
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=13.49 E-value=6.2e+02 Score=21.72 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=24.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 016713 289 PEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHF 341 (384)
Q Consensus 289 PEGlLstl~ai~~~llG~~aG~~L~~~~~~~~~~~~ll~~G~~ll~~G~~l~~ 341 (384)
|-|.+.+ .++....|+.+|-+.++.++.++.+.-.++..+++.+.+.+++.
T Consensus 82 ~~g~~~~--~l~~~~~g~~~~~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n~ 132 (189)
T 3p5n_A 82 PVGPFAN--FLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNY 132 (189)
T ss_dssp SSHHHHH--HHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443443 44556778777855544333222222222333444555666664
No 5
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=12.88 E-value=1.1e+02 Score=25.19 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=7.6
Q ss_pred cccCCCcccCC
Q 016713 8 TTHHHPLIISE 18 (384)
Q Consensus 8 ~~~~~~~~~~~ 18 (384)
..||||+.-.|
T Consensus 4 ~~~~~p~~~~~ 14 (128)
T 4ar0_A 4 HHHHHPMSDYD 14 (128)
T ss_dssp SCSSSCSCSTT
T ss_pred cccCCCCcccC
Confidence 46889996444
No 6
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=10.61 E-value=10 Score=33.33 Aligned_cols=10 Identities=60% Similarity=0.979 Sum_probs=0.0
Q ss_pred cccccCCCcc
Q 016713 6 AETTHHHPLI 15 (384)
Q Consensus 6 ~~~~~~~~~~ 15 (384)
||..|||-|+
T Consensus 1 ~~~~~~~~~~ 10 (204)
T 2w7q_A 1 AEHHHHHHLV 10 (204)
T ss_dssp ----------
T ss_pred CCcccccccc
Confidence 5777888765
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.49 E-value=6.8e+02 Score=23.61 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC----CCCCcccCCChhHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 016713 318 HLARLKQWVTMGFALLIFGLTLHFTN----AIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDCNIFGPW 383 (384)
Q Consensus 318 ~~~~~~~ll~~G~~ll~~G~~l~~~~----~~PInK~lWT~Sfvl~t~G~s~llla~ly~liDv~~~~~w 383 (384)
.++.++.+.+++++++..-++.++.| .+|--+ |.-.|..+.+. .+++-+++|+. -+.+||
T Consensus 299 ~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~Gy~~~l~~-m~~i~~~~~~~---Fkrk~W 362 (363)
T 2iub_A 299 TNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR--WKWGYPVVLAV-MGVIAVIMVVY---FKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC----------------CHHHHHH-HHHHHHHHHTT---TTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc--CcHHHHHHHHH-HHHHHHHHHHH---HHHccc
Confidence 34556667788888888888776542 245433 55556544433 33333344444 245666
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.27 E-value=2.4e+02 Score=21.28 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=24.7
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 016713 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (384)
Q Consensus 64 ha~w~G~~~~DlvfP~Flfi~G~si~ls~~ 93 (384)
|-+|+.+-..-++|...+|++|+.+.+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 345666777888999999999999999974
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.28 E-value=2.2e+02 Score=21.26 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=24.6
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 016713 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (384)
Q Consensus 64 ha~w~G~~~~DlvfP~Flfi~G~si~ls~~ 93 (384)
|-+|+.+...-++|-..+|++|+.+-+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 345666777888999999999999999874
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=8.60 E-value=2.1e+02 Score=21.80 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.8
Q ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 016713 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (384)
Q Consensus 64 ha~w~G~~~~DlvfP~Flfi~G~si~ls~~ 93 (384)
|-+|+.+...-++|-..+|++|+.+-+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 345666778889999999999999999874
Done!