Query 016713
Match_columns 384
No_of_seqs 171 out of 888
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 18:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016713.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016713hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 11.9 3.7E+02 0.027 22.1 9.0 27 288-314 59-85 (447)
2 d1jb0j_ f.23.18.1 (J:) Subunit 10.6 89 0.0064 19.5 2.6 22 292-313 7-28 (41)
3 d1l0ba2 c.15.1.3 (A:1705-1801) 6.1 31 0.0023 25.8 -1.4 16 10-25 44-59 (97)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 5.2 7.3E+02 0.053 20.0 8.0 25 290-314 287-311 (447)
5 d1pv7a_ f.38.1.2 (A:) Lactose 5.1 3.6E+02 0.026 21.4 5.0 26 290-315 45-70 (417)
6 d1v54c_ f.25.1.1 (C:) Mitochon 4.8 7.9E+02 0.058 20.0 10.8 75 286-361 121-200 (259)
7 d1uaza_ f.13.1.1 (A:) Archaerh 4.5 6.6E+02 0.048 20.3 6.4 24 318-341 110-133 (236)
8 d1m56c_ f.25.1.1 (C:) Bacteria 4.5 8.3E+02 0.06 19.8 10.5 18 344-361 189-206 (265)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 4.5 2.7E+02 0.02 15.6 2.4 14 353-366 3-16 (30)
10 d2idla1 d.64.2.1 (A:1-112) Hyp 4.2 3.2E+02 0.024 19.8 3.5 21 358-378 32-52 (112)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.86 E-value=3.7e+02 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.033 Sum_probs=20.7
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHhh
Q 016713 288 EPEGLLSSVSSILSTIIGVHFGHVIIH 314 (384)
Q Consensus 288 DPEGlLstl~ai~~~llG~~aG~~L~~ 314 (384)
.--|++.++..+...+.....|.+..+
T Consensus 59 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr 85 (447)
T d1pw4a_ 59 GDLGFALSGISIAYGFSKFIMGSVSDR 85 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334788888888888888888877654
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=10.65 E-value=89 Score=19.51 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 016713 292 LLSSVSSILSTIIGVHFGHVII 313 (384)
Q Consensus 292 lLstl~ai~~~llG~~aG~~L~ 313 (384)
-|||-|-+++..++..||-++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 3688899999999999996653
No 3
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.07 E-value=31 Score=25.79 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=7.8
Q ss_pred cCCCcccCCCCcchhh
Q 016713 10 HHHPLIISEPDVSDQQ 25 (384)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (384)
..||+||.+||...+.
T Consensus 44 ~~~~viVvqpda~t~~ 59 (97)
T d1l0ba2 44 GAHPIVLVQPSAWTED 59 (97)
T ss_dssp SSCCEEEEC-------
T ss_pred CCeeEEEEcCCccccc
Confidence 4599999999976544
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.16 E-value=7.3e+02 Score=20.02 Aligned_cols=25 Identities=4% Similarity=-0.193 Sum_probs=14.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhh
Q 016713 290 EGLLSSVSSILSTIIGVHFGHVIIH 314 (384)
Q Consensus 290 EGlLstl~ai~~~llG~~aG~~L~~ 314 (384)
.|...++..+...+.....|.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 287 SSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhhhhhhhhhhhhhhh
Confidence 3555566565555555566655543
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.11 E-value=3.6e+02 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhc
Q 016713 290 EGLLSSVSSILSTIIGVHFGHVIIHT 315 (384)
Q Consensus 290 EGlLstl~ai~~~llG~~aG~~L~~~ 315 (384)
-|++.++..+...+.....|.+-.+.
T Consensus 45 ~g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 45 TGIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888888899999776543
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.79 E-value=7.9e+02 Score=19.99 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=35.5
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHhhhc----CCCCCcccCCChhHHHHH
Q 016713 286 PFEPEGLLSSVSSILSTIIGVHFGHVIIH-TKGHLARLKQWVTMGFALLIFGLTLHFT----NAIPLNKQLYTLSYVCVT 360 (384)
Q Consensus 286 ~fDPEGlLstl~ai~~~llG~~aG~~L~~-~~~~~~~~~~ll~~G~~ll~~G~~l~~~----~~~PInK~lWT~Sfvl~t 360 (384)
+.||.++ ..+++++...-|..+...... +++++++.+.++...+++.++-...+.. ..+.++.+...++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 3455443 234444444444443332221 2344445555555544444333333211 235678888877777766
Q ss_pred H
Q 016713 361 S 361 (384)
Q Consensus 361 ~ 361 (384)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=4.51 E-value=6.6e+02 Score=20.26 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 016713 318 HLARLKQWVTMGFALLIFGLTLHF 341 (384)
Q Consensus 318 ~~~~~~~ll~~G~~ll~~G~~l~~ 341 (384)
.++.+.+++.+.+++++.|++-..
T Consensus 110 ~~~~~~~li~a~~~Miv~G~~ge~ 133 (236)
T d1uaza_ 110 DRVSIGTLVGVDALMIVTGLVGAL 133 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888888988987654
No 8
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.49 E-value=8.3e+02 Score=19.80 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=13.8
Q ss_pred CCCCcccCCChhHHHHHH
Q 016713 344 AIPLNKQLYTLSYVCVTS 361 (384)
Q Consensus 344 ~~PInK~lWT~Sfvl~t~ 361 (384)
.+.++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 467888888888877764
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.48 E-value=2.7e+02 Score=15.59 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=8.1
Q ss_pred ChhHHHHHHHHHHH
Q 016713 353 TLSYVCVTSGAAAL 366 (384)
Q Consensus 353 T~Sfvl~t~G~s~l 366 (384)
|..||++-+.+-.+
T Consensus 3 ~i~yv~ifac~i~l 16 (30)
T d2axtt1 3 TITYVFIFACIIAL 16 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 45677776554443
No 10
>d2idla1 d.64.2.1 (A:1-112) Hypothetical protein SP1106 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.24 E-value=3.2e+02 Score=19.83 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 016713 358 CVTSGAAALVFSAIYALVDCN 378 (384)
Q Consensus 358 l~t~G~s~llla~ly~liDv~ 378 (384)
++|+|.|.+++.....+-++.
T Consensus 32 IVCAaVS~l~~~~vn~l~~~~ 52 (112)
T d2idla1 32 VVCASVSTLAINFINSIEKFA 52 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEehHHHHHHHHHHHHHHHh
Confidence 467777777777777666554
Done!