BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016714
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/365 (75%), Positives = 308/365 (84%), Gaps = 2/365 (0%)
Query: 1 MSLRPSTRAEVRKKGYKTGVXXXXXXXXXXXNLVEIRKNKREDNLLKKRREXXXXXXXXX 60
MSLRPS R EVR+ YK V N+VEIRK++RE++LLKKRRE
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 XXDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVP 120
A+ ++KKLES+P+M+ GV+S+D LQLEATTQFRKLLSIERSPPI+EVI++GVVP
Sbjct: 63 ASAAT--GVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Query: 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQA 180
RFV+FL R D PQLQFEAAWALTN+ASGTSE+T+VVI+HGAVP+FV+LL S SDDVREQA
Sbjct: 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 181 VWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240
VWALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP FE
Sbjct: 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240
Query: 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300
Q +PALP L RLIH NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL+HPS
Sbjct: 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300
Query: 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
+VLIPALRTVGNIVTGDDAQTQ +ID+ LPCL LLTQN KKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 361 RAQIQ 365
+ QIQ
Sbjct: 361 KDQIQ 365
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 137 EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196
+A WAL+ ++ GT++ + VIE G P V+LL S V A+ +GN+ +
Sbjct: 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322
Query: 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI-----LQR 251
++ AL LL+ L ++ K S+ + A WT+SN G +Q++ + L
Sbjct: 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAVINAGIIGPLVN 378
Query: 252 LIHLNDEEVLTDACWALS-YLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310
L+ + ++ +A WA+S S G +D+I+ ++ G L +LL+ P ++ L +
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438
Query: 311 GNIV 314
NI+
Sbjct: 439 ENIL 442
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
+I +P + L ++ ++ EA W ++N+ +G + + VI G + V LL +
Sbjct: 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA 383
Query: 173 SDDVREQAVWALGN-VAGDSPSCRDLVLSSGALMPL 207
D++++A WA+ N +G S ++S G + PL
Sbjct: 384 EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 304 IPALRTVGNIVTGD-----DAQTQF--------------VIDNGVLPCLYQLLTQNHKKS 344
+PA+ +G + + D +A TQF VI +GV+P Q LT+
Sbjct: 76 LPAM--IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQ 133
Query: 345 IKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
++ EA W ++NI +G +V H + +FV
Sbjct: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 506 bits (1304), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/303 (80%), Positives = 269/303 (88%)
Query: 63 DASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF 122
D A+ S+P+M+ GV+S+D LQLEATTQFRKLLSIERSPPI+EVI++GVVPRF
Sbjct: 25 DDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 84
Query: 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVW 182
V+FL R D PQLQFEAAWALTN+ASGTSE+T+VVI+HGAVP+FV+LL S SDDVREQAVW
Sbjct: 85 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 144
Query: 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242
ALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP FEQ
Sbjct: 145 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 204
Query: 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
+PALP L RLIH NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL+HPS +V
Sbjct: 205 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 264
Query: 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362
LIPALRTVGNIVTGDDAQTQ +ID+ LPCL LLTQN KKSIKKEACWTISNITAGN+
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 324
Query: 363 QIQ 365
QIQ
Sbjct: 325 QIQ 327
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 137 EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196
+A WAL+ ++ GT++ + VIE G P V+LL S V A+ +GN+ +
Sbjct: 225 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 284
Query: 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI-----LQR 251
++ AL LL+ L ++ K S+ + A WT+SN G +Q++ + L
Sbjct: 285 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAVINAGIIGPLVN 340
Query: 252 LIHLNDEEVLTDACWALS-YLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310
L+ + ++ +A WA+S S G +D+I+ ++ G L +LL+ P ++ L +
Sbjct: 341 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 400
Query: 311 GNIV 314
NI+
Sbjct: 401 ENIL 404
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
+I +P + L ++ ++ EA W ++N+ +G + + VI G + V LL +
Sbjct: 286 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA 345
Query: 173 SDDVREQAVWALGN-VAGDSPSCRDLVLSSGALMPL 207
D++++A WA+ N +G S ++S G + PL
Sbjct: 346 EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI +GV+P Q LT+ ++ EA W ++NI +G +V H + +FV
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 128
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 183/297 (61%), Positives = 218/297 (73%), Gaps = 3/297 (1%)
Query: 79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFE 137
M++ ++S+ P QL AT +FRKLLS E +PPIDEVI GVV RFVEFL R + LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197
+AW LTN+ASG S TR+VI+ GAVP+F++LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLN 256
VL L PLL ++ ++L+M RNA W LSN CRGK P P F +V P L +L L+ ++
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 257 DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316
D +VL DACWALSYLSDGPNDKIQAVI+AGVC RLVELLMH V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLF 373
DD QTQ VI N L + K+SIKKEACWTISNITAGNRAQIQ ++F
Sbjct: 262 DDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 317
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 183/297 (61%), Positives = 218/297 (73%), Gaps = 3/297 (1%)
Query: 79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-GVVPRFVEFLGRHDMPQLQFE 137
M++ ++S+ P QL AT +FRKLLS E +PPIDEVI GVV RFVEFL R + LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197
+AW LTN+ASG S TR+VI+ GAVP+F++LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLN 256
VL L PLL ++ ++L+M RNA W LSN CRGK P P F +V P L +L L+ ++
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 257 DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316
D +VL DACWALSYLSDGPNDKIQAVI+AGVC RLVELLMH V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHLF 373
DD QTQ VI N L + K+SIKKEACWTISNITAGNRAQIQ ++F
Sbjct: 265 DDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 343 bits (881), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 185/339 (54%), Positives = 228/339 (67%), Gaps = 9/339 (2%)
Query: 34 VEIRKNKREDNLLKKRR------EXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSED 87
VE+RK KR++ L K+R A Q + + +P M Q + S+D
Sbjct: 41 VELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDD 100
Query: 88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147
QL AT +FR++LS E PPID VI+AGVVPR VEF+ + LQ EAAWALTN+AS
Sbjct: 101 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160
Query: 148 GTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPL 207
GTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS RD VL A+ P+
Sbjct: 161 GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220
Query: 208 LAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDACW 266
L N + K S++R ATWTLSN CRGK P P + V ALP L +LI+ D E L DACW
Sbjct: 221 LGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279
Query: 267 ALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID 326
A+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGNIVTG+D QTQ VI+
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339
Query: 327 NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 340 AGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 314
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 375 QIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 337 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
+++A WA+ N + P ++S G + PL
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/293 (59%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+ +P M Q + S+D QL AT +FR++LS E PPID VI+AGVVPR VEF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
LQ EAAWALTN+ASGTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRL 252
RD VL A+ P+L N + K S++R ATWTLSN CRGK P P + V ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312
I+ D E L DACWA+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
IVTG+D QTQ VI+ GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 240 IVTGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 171 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 228
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 229 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 288
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 289 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSG 327
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 251 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
D +++A WA+ N + P ++S G + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 93
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/293 (59%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+ +P M Q + S+D QL AT +FR++LS E PPID VI+AGVVPR VEF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
LQ EAAWALTN+ASGTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRL 252
RD VL A+ P+L N + K S++R ATWTLSN CRGK P P + V ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312
I+ D E L DACWA+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
IVTG+D QTQ VI+ GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 240 IVTGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 291
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 171 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 228
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 229 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 288
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 289 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSG 327
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 251 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
D +++A WA+ N + P ++S G + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 93
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
+P M Q + S+D QL AT +FR++LS E PPID VI+AGVVPR VEF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
EAAWALTN+ASGTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
D E L DACWA+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
TG+D QTQ VI+ GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 240 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 289
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 169 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 226
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 227 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 286
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 287 QIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 325
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 249 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
+++A WA+ N + P ++S G + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 91
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
+P M Q + S+D QL AT +FR++LS E PPID VI+AGVVPR VEF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
EAAWALTN+ASGTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
D E L DACWA+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
TG+D QTQ VI+ GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 241 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 170 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 227
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 228 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 287
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 288 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSG 326
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 250 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
D +++A WA+ N + P ++S G + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 92
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
+P M Q + S+D QL AT +FR++LS E PPID VI+AGVVPR VEF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
EAAWALTN+ASGTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
D E L DACWA+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
TG+D QTQ VI+ GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 240 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 289
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 169 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 226
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 227 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 286
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 287 QIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 325
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 249 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
+++A WA+ N + P ++S G + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 91
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
+P M Q + S+D QL AT +FR++LS E PPID VI+AGVVPR VEF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
EAAWALTN+ASGTS T+VV++ AVP+F+QLL +GS +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP-FEQVKPALPILQRLIH 254
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314
D E L DACWA+SYLSDGP + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
TG+D QTQ VI+ GVLP L +LL + K++IKKEACWTISNITAGN QIQ
Sbjct: 241 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQ 290
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+++P++ + ++S D ++A LS I VI + R VE L H+
Sbjct: 170 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTL 227
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV-AGDSP 192
+Q A A+ N+ +G T+VVI G +P LLSS ++++++A W + N+ AG++
Sbjct: 228 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 287
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ ++ L+P L +L E ++ + A W +SN G
Sbjct: 288 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSG 326
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG 172
VI AGV+P L ++ EA W ++N+ +G +E + VI+ +P V+LL
Sbjct: 250 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 173 SDDVREQAVWALGNVAGDS---PSCRDLVLSSGALMPL 207
D +++A WA+ N + P ++S G + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV---HDSFHLFV 374
VI GV+P L + + +N + ++ EA W ++NI +G AQ +V D+ LF+
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 92
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/337 (50%), Positives = 227/337 (67%), Gaps = 6/337 (1%)
Query: 34 VEIRKNKREDNLLKKRREXXXXXXXXXXXDASQNAIEKKLESIPSMVQGVWSEDPALQLE 93
VE+RK K+++ +LK+R ++N S+ +V+G+ S + QL+
Sbjct: 36 VELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQ 95
Query: 94 ATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153
AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +QFE+AWALTN+ASGTSE T
Sbjct: 96 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155
Query: 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN- 212
+ V++ GA+P F+ LL+S + EQAVWALGN+AG + RDLV+ GA+ PLLA L
Sbjct: 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAV 215
Query: 213 -EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPILQRLIHLNDEEVLTDACWAL 268
+ S L+ LRN TWTLSN CR K P P + V+ LP L RL+H ND EVL D+CWA+
Sbjct: 216 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275
Query: 269 SYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNG 328
SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR +GNIVTG D QTQ VID G
Sbjct: 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335
Query: 329 VLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 336 ALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 371
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 286 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 345 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKAAAWAITN 403
Query: 230 FCRG 233
+ G
Sbjct: 404 YTSG 407
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 259 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 288
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 338
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 253 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 311
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 312 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 370
Query: 230 FCRG 233
+ G
Sbjct: 371 YTSG 374
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 106 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 165
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 166 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 225
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 226 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 255
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 230 FCRG 233
+ G
Sbjct: 385 YTSG 388
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 240 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 269
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 230 FCRG 233
+ G
Sbjct: 385 YTSG 388
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 240 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 269
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 352
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 230 FCRG 233
+ G
Sbjct: 385 YTSG 388
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 240 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 269
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 302
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 334
Query: 230 FCRG 233
+ G
Sbjct: 335 YTSG 338
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 190 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 219
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 302
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 334
Query: 230 FCRG 233
+ G
Sbjct: 335 YTSG 338
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 190 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 219
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 328
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 243 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 301
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 302 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 360
Query: 230 FCRG 233
+ G
Sbjct: 361 YTSG 364
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 96 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 155
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 156 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 215
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 216 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 245
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 308
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 223 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 281
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 340
Query: 230 FCRG 233
+ G
Sbjct: 341 YTSG 344
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 196 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 225
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 301
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 216 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 275 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 333
Query: 230 FCRG 233
+ G
Sbjct: 334 YTSG 337
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 128
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 129 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 188
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 189 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 218
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 302
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 334
Query: 230 FCRG 233
+ G
Sbjct: 335 YTSG 338
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 190 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 219
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 336
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 251 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 309
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 310 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 368
Query: 230 FCRG 233
+ G
Sbjct: 369 YTSG 372
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 104 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 163
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 164 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 223
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 224 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 253
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 301
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 216 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 275 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 333
Query: 230 FCRG 233
+ G
Sbjct: 334 YTSG 337
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 128
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 129 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 188
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 189 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 218
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 297
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 212 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 271 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 329
Query: 230 FCRG 233
+ G
Sbjct: 330 YTSG 333
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 124
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 125 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 184
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 185 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 214
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLG+ D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD +
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H ND EVL D+CWA+SYL+DGPN++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 297
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I+ V+K GVVP+ V+ LG ++P + A A+ N+ +GT E T+ VI+ GA+ +F LL
Sbjct: 212 IEMVVKKGVVPQLVKLLGATELP-IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
Query: 170 SSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229
++ +++++A W + N+ V++ G L+P L + + + A W ++N
Sbjct: 271 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITN 329
Query: 230 FCRG 233
+ G
Sbjct: 330 YTSG 333
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 263 DACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322
++ WAL+ ++ G +++ +AV++ G P + LL P A + A+ +GNI A
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 124
Query: 323 FVIDNG-----------------------------------------------VLPCLYQ 335
VI +G +LP L +
Sbjct: 125 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 184
Query: 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
LL N + + ++CW IS +T G +I++
Sbjct: 185 LLHHNDPE-VLADSCWAISYLTDGPNERIEM 214
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 313 bits (803), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 208/296 (70%), Gaps = 6/296 (2%)
Query: 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQL 134
S+ +V+G+ S + QL+AT RKLLS E+ PPID +I+AG++P+FV FLGR D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194
QFE+AWALTN+ASGTSE T+ V++ GA+P F+ LL+S + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 195 RDLVLSSGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPT-PFEQVKPALPIL 249
RDLV+ GA+ PLLA L + S L+ LRN TWTLSN CR K P P + V+ LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 250 QRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309
RL+H +D EVL D CWA+SYL+DGPN++I V++ GV P+LV+LL ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365
+GNIVTG D QTQ VID G L LLT N K +I+KEA WT+SNITAG + QIQ
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ 303
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Query: 67 NAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL 126
+A+E+ L P++V+ + +DP + L T L+ + I V+K GVVP+ V+ L
Sbjct: 179 DAVEQIL---PTLVRLLHHDDPEV-LADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLL 234
Query: 127 GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGN 186
G ++P + A A+ N+ +GT E T+VVI+ GA+ +F LL++ +++++A W + N
Sbjct: 235 GASELP-IVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 293
Query: 187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
+ V++ G L+P L + + + A W ++N+ G
Sbjct: 294 ITAGRQDQIQQVVNHG-LVPFLVSVLSKADFKTQKEAVWAVTNYTSG 339
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 12/236 (5%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
+P+ + L DM Q Q A + + S +E + VI+ GA+P VQLLSS ++ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
+A+WAL N+A V+ +GAL P L QL +L+ A W LSN G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG---- 127
Query: 239 FEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
EQ++ ALP L +L+ +E++L +A WALS ++ G N++IQAVI+AG P LV+
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEA 349
LL P+ +L AL + NI +G + Q Q V + G L L QL + ++K I+KEA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 133/232 (57%), Gaps = 12/232 (5%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
+P M Q + S+D QL AT +F ++LS + + I VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
EA WAL+N+ASG +E + VI+ GA+P VQLLSS ++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQ 250
V+ +GAL P L QL +L+ A W LSN G EQ++ ALP L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 251 RLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302
+L+ +E++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 15/212 (7%)
Query: 162 VPMFVQLLSSGSDDVREQ--AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM 219
+P Q L+S DD++EQ A + D V+ +GAL P L QL +
Sbjct: 14 LPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQI 70
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
L+ A W LSN G EQ++ ALP L +L+ +E++L +A WALS ++ G
Sbjct: 71 LQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
N++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q VID G LP L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 335 QLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
QLL+ +++ I +EA W +SNI +G Q Q
Sbjct: 187 QLLSSPNEQ-ILQEALWALSNIASGGNEQKQA 217
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I VI AG +P V+ L + LQ EA WAL+N+ASG +E + V E GA+ QL
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231
Query: 170 SSGSDDVREQAVWAL 184
S ++ ++++A AL
Sbjct: 232 SHENEKIQKEAQEAL 246
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
+P M Q + S+D QL AT +F ++LS + + I VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195
EA WAL+N+ASG +E + VI+ GA+P VQLLSS ++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP--ALPILQRLI 253
V+ +GAL P L QL +L+ A W LSN G + VK AL L++L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQ 189
Query: 254 HLNDEEVLTDACWALSYL 271
+E++ +A AL L
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Query: 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304
ALP L +L+ +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364
AL + NI +G + Q Q VID G LP L QLL+ +++ I +EA W +SNI +G Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 365 QV 366
Q
Sbjct: 174 QA 175
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 15/195 (7%)
Query: 162 VPMFVQLLSSGSDDVREQ--AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSM 219
+P Q L+S DD++EQ A + D V+ +GAL P L QL +
Sbjct: 14 LPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQI 70
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
L+ A W LSN G EQ++ ALP L +L+ +E++L +A WALS ++ G
Sbjct: 71 LQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
N++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q V + G L L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 335 QLLTQNHKKSIKKEA 349
QL + ++K I+KEA
Sbjct: 187 QLQSHENEK-IQKEA 200
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 54/245 (22%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
+P+ V+ L D +LQ A L+ +ASG +E + VI+ GA+P VQ
Sbjct: 14 LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQ----------- 61
Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
LL+ NE +L+ A W LSN G
Sbjct: 62 ----------------------------LLSSPNEQ----ILQEALWALSNIASGG---- 85
Query: 239 FEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
EQ++ ALP L +L+ +E++L +A WALS ++ G N++IQAVI+AG P LV+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353
LL P+ +L AL + NI +G + Q Q V + G P L QL + ++K I+KEA +
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEK-IQKEAQEAL 204
Query: 354 SNITA 358
I +
Sbjct: 205 EKIQS 209
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 10/152 (6%)
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
L++A LS G EQ++ ALP L +L+ +E++L +A WALS ++ G
Sbjct: 29 LQSALRKLSQIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
N++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q VID G LP L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144
Query: 335 QLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
QLL+ +++ I +EA W +SNI +G Q Q
Sbjct: 145 QLLSSPNEQ-ILQEALWALSNIASGGNEQKQA 175
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 7/160 (4%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIER--SPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+P MVQ + S D Q E + RKL I + I VI AG +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
LQ EA WAL+N+ASG +E + VI+ GA+P VQLLSS ++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233
V+ +GAL P L QL +L+ A W LSN G
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASG 168
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL 169
I VI AG +P V+ L + LQ EA WAL+N+ASG +E + V E GA P QL
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGAEPALEQLQ 189
Query: 170 SSGSDDVREQAVWAL 184
SS ++ ++++A AL
Sbjct: 190 SSPNEKIQKEAQEAL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 10/152 (6%)
Query: 220 LRNATWTLSNFCRGKPPTPFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDG 274
L++A LS G EQ++ ALP L +L+ +E++L +A WALS ++ G
Sbjct: 29 LQSALRKLSQIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLY 334
N++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q VID G LP L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144
Query: 335 QLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366
QLL+ +++ I +EA W +SNI +G Q Q
Sbjct: 145 QLLSSPNEQ-ILQEALWALSNIASGGNEQKQA 175
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 54/236 (22%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
+P+ V+ L D +LQ A L+ +ASG +E + VI+ GA+P VQ
Sbjct: 14 LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQ----------- 61
Query: 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238
LL+ NE +L+ A W LSN G
Sbjct: 62 ----------------------------LLSSPNEQ----ILQEALWALSNIASGG---- 85
Query: 239 FEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293
EQ++ ALP L +L+ +E++L +A WALS ++ G N++IQAVI+AG P LV+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEA 349
LL P+ +L AL + NI +G + Q Q V + G L L QL + ++K I+KEA
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 200
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIER--SPPIDEVIKAGVVPRFVEFLGRHDMPQ 133
+P MVQ + S D Q E + RKL I + I VI AG +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193
LQ EA WAL+N+ASG +E + VI+ GA+P VQLLSS ++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKP--ALPILQR 251
V+ +GAL P L QL +L+ A W LSN G + VK AL L++
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQ 187
Query: 252 LIHLNDEEVLTDACWALSYL 271
L +E++ +A AL L
Sbjct: 188 LQSHENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 130/248 (52%), Gaps = 14/248 (5%)
Query: 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178
V + V+ L D + Q EAA L +ASG + + +++ G V + V+LL+S +V++
Sbjct: 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 179 QAVWALGNVA-GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT 237
+A AL N+A G + + +V + G + +L +L + + + A L+N G
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGG--VEVLVKLLTSTDSEVQKEAARALANIASG---- 116
Query: 238 PFEQVKP-----ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV 292
P E +K + +L +L+ D EV +A AL+ ++ GP++ I+A+++AG LV
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Query: 293 ELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT 352
+LL + V A R + NI +G + + ++D G + L +LLT + ++KEA
Sbjct: 177 KLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE-VQKEAQRA 235
Query: 353 ISNITAGN 360
+ NI +G
Sbjct: 236 LENIKSGG 243
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 68/343 (19%)
Query: 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQ 135
IP++V+ + S ++ A T LL + + + G+ + V L +++ P+
Sbjct: 105 IPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGL-QKMVPLLNKNN-PKFL 162
Query: 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALG---NVAGDSP 192
L +A G E +++ +G VQ++ + S E+ +W V P
Sbjct: 163 AITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYS---YEKLLWTTSRVLKVLSVCP 219
Query: 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRL 252
S + ++ +G + L L +S +++N WTL N T E ++ L IL
Sbjct: 220 SNKPAIVEAGGMQALGKHLTSNSP-RLVQNCLWTLRNL--SDVATKQEGLESVLKILVNQ 276
Query: 253 IHLNDEEVLTDACWALSYLS-------------DGPNDKIQAVIEAG---------VC-- 288
+ ++D VLT A LS L+ G I A++ AG VC
Sbjct: 277 LSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCAL 336
Query: 289 -----------------------PRLVELLMHPSATVLIPALRTVGNI-----VTGDDAQ 320
P +V+LL P+ L+ A T+G I + A
Sbjct: 337 RHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKA--TIGLIRNLALCPANHAP 394
Query: 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQ 363
Q + V+P L QLL + H+ + + A T T G R +
Sbjct: 395 LQ---EAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRME 434
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSK 216
+P+FVQLL S ++++ A L +A D + D + + GA PL+ L HS+
Sbjct: 463 IPLFVQLLYSSVENIQRVAAGVLCELAQDKEAA-DAIDAEGASAPLMELL--HSR 514
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLR 221
+P+ G + + +AL +A +P ++ M +L+ N KL+ L
Sbjct: 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL- 165
Query: 222 NATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQA 281
NF F+ V P LP + L+H DE V A AL +L+ NDK++
Sbjct: 166 -------NFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRK 217
Query: 282 VIEAGVCPRLVEL 294
V V RL EL
Sbjct: 218 V----VIKRLEEL 226
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197
A A ++ G + R H A+P + L++ S V+E W +G +A D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 198 VLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG---KPPTPFEQVKPAL 246
G + L L +H K++ N +WT+ N P+P PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIYNFYPAL 499
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197
A A ++ G + R H A+P + L++ S V+E W +G +A D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 198 VLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG---KPPTPFEQVKPAL 246
G + L L +H K++ N +WT+ N P+P PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIYNFYPAL 499
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 177 REQAVWALGNV-AGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
R+ AV A G + G PS + LV+ + MP L +L + + + A WT+ C
Sbjct: 258 RDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVVRDTAAWTVGRICELL 314
Query: 235 PPTPFEQVKPALPILQRLIH-LNDE-EVLTDACWALSYLSDG 274
P V A P+LQ LI L+ E V ++ CWA S L++
Sbjct: 315 PEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 355
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 177 REQAVWALGNV-AGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
R+ AV A G + G PS + LV+ + MP L +L + + + A WT+ C
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 235 PPTPFEQVKPALPILQRLIH-LNDE-EVLTDACWALSYLSDG 274
P V A P+LQ LI L+ E V ++ CWA S L++
Sbjct: 440 PEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 177 REQAVWALGNV-AGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
R+ AV A G + G PS + LV+ + MP L +L + + + A WT+ C
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 235 PPTPFEQVKPALPILQRLIH-LNDE-EVLTDACWALSYLSDG 274
P V A P+LQ LI L+ E V ++ CWA S L++
Sbjct: 440 PEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 177 REQAVWALGNV-AGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
R+ AV A G + G PS + LV+ + MP L +L + + + A WT+ C
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 235 PPTPFEQVKPALPILQRLIH-LNDE-EVLTDACWALSYLSDG 274
P V A P+LQ LI L+ E V ++ CWA S L++
Sbjct: 440 PEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 118 VVPRFVEFLGRH-DMPQLQFE--AAWALTNVASGT--SEHTRVVIEHGAVPMFVQLLSSG 172
+VP + F+ H P ++ A A + G S+ +VI+ A+P ++L+
Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDP 420
Query: 173 SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--HSKLSMLRNATWTLSNF 230
S VR+ A W +G + P + ++ L PLL L E ++ + N W S+
Sbjct: 421 SVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 231 CRG 233
Sbjct: 478 AEA 480
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 246 LPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP 305
LP ++ I D A A + +GP + P L+EL+ PS V
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427
Query: 306 ALRTVGNIVT-GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356
A TVG I +A V +L CL + L+ + + CW S++
Sbjct: 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPR--VASNVCWAFSSL 477
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Query: 131 MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+ Q Q A TNV T+ V+ + +P+ + LL + DVR A +A+ D
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189
Query: 191 SPSCRDLVLSSGALMPLLAQLNEHSKLSML-----RNATWTLSNFCRG-KPPTPFEQV-- 242
+ RD + L NE ++ + R LS C K T ++ +
Sbjct: 190 NSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIE 243
Query: 243 -------KPALPILQ-RLIHLNDEEVLTDA 264
K LP+L L +D E++T A
Sbjct: 244 AAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 177 REQAVWALGNV-AGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
R+ AV A G++ G P+ + LV+ + MP L +L + + + WT+ C
Sbjct: 383 RDAAVMAFGSILEGPEPNQLKPLVIQA---MPTLIELMKDPSVVVRDTTAWTVGRICELL 439
Query: 235 PPTPFEQVKPALPILQRLIH-LNDE-EVLTDACWALSYLSDG 274
P V A P+LQ LI L+ E V ++ CWA S L++
Sbjct: 440 PEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 42/232 (18%)
Query: 134 LQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA--GD 190
L+ A ALTN+ G + + G + V L S S+D+++ L N++ D
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 191 SPSCRDL--VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI 248
S + L V S ALM ++ + S L + +A W LS C + V AL
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 334
Query: 249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR 308
L L+Y S A+IE+G LR
Sbjct: 335 L---------------VGTLTYRS---QTNTLAIIESGG-----------------GILR 359
Query: 309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
V +++ ++ Q + +N L L Q L ++H +I AC T+ N++A N
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 410
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 42/237 (17%)
Query: 129 HDMPQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187
H L+ A ALTN+ G + + G + V L S S+D+++ L N+
Sbjct: 97 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 156
Query: 188 A--GDSPSCRDL--VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK 243
+ D S + L V S ALM ++ + S L + +A W LS C + V
Sbjct: 157 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVD 215
Query: 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303
AL L + L+ A+IE+G
Sbjct: 216 GALAFL------------------VGTLTYRSQTNTLAIIESGG---------------- 241
Query: 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
LR V +++ ++ Q + +N L L Q L ++H +I AC T+ N++A N
Sbjct: 242 -GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 296
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 42/232 (18%)
Query: 134 LQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA--GD 190
L+ A ALTN+ G + + G + V L S S+D+++ L N++ D
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 191 SPSCRDL--VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI 248
S + L V S ALM ++ + S L + +A W LS C + V AL
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 218
Query: 249 LQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR 308
L + L+ A+IE+G LR
Sbjct: 219 L------------------VGTLTYRSQTNTLAIIESGG-----------------GILR 243
Query: 309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
V +++ ++ Q + +N L L Q L ++H +I AC T+ N++A N
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 294
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 42/237 (17%)
Query: 129 HDMPQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187
H L+ A ALTN+ G + + G + V L S S+D+++ L N+
Sbjct: 95 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 154
Query: 188 A--GDSPSCRDL--VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK 243
+ D S + L V S ALM ++ + S L + +A W LS C + V
Sbjct: 155 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVD 213
Query: 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303
AL L + L+ A+IE+G
Sbjct: 214 GALAFL------------------VGTLTYRSQTNTLAIIESGG---------------- 239
Query: 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360
LR V +++ ++ Q + +N L L Q L ++H +I AC T+ N++A N
Sbjct: 240 -GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 294
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 119 VPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL 168
+ + E+ G H P+LQ EA + LT V + R+V G P +QL
Sbjct: 127 INEYAEWYGHSHRAPELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQL 177
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 395 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 454
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 455 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 398 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 457
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 458 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 382 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 441
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 442 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 399 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 458
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 459 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 399 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 458
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 459 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 382 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 441
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 442 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 384 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 443
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 444 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 386 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 445
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 446 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 395 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 454
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 455 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 400 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 459
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 460 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 401 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 460
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 461 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|2EWF|A Chain A, Crystal Structure Of The Site-specific Dna Nickase
N.bspd6i
Length = 610
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 101 LLSIERSPPIDEVIKAGVVPR-------FVEFLGRHDMPQLQFEAAWALTNVASGT-SEH 152
+L+ E+S IDE+I + V + F E+ G +PQ FE L ++A E+
Sbjct: 265 VLNPEKSDLIDEIISSSKVVKNYTRVEEFHEYYGNPSLPQFSFETKEQLLDLAHRIRDEN 324
Query: 153 TRV---VIEH 159
TR+ ++EH
Sbjct: 325 TRLAEQLVEH 334
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + + G + H R+VI
Sbjct: 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 177 REQAVWALGNV-AGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234
R+ AV A G + G PS + LV+ + MP L +L + + + A WT+ C
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 235 PPTPFEQVKPALPILQRLIH 254
P V A P+LQ LI
Sbjct: 440 PEAAINDVYLA-PLLQCLIE 458
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 117 GVVPRFVEFLGRHDM----------PQLQFEAAWALTNVASGTSE---------HTRVVI 157
G +PR V+ L R Q QF + G + H R+VI
Sbjct: 339 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVI 398
Query: 158 EH-GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190
+P+FVQLL S ++++ A L +A D
Sbjct: 399 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|2QTS|A Chain A, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|B Chain B, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|C Chain C, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|D Chain D, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|E Chain E, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
pdb|2QTS|F Chain F, Structure Of An Acid-Sensing Ion Channel 1 At 1.9 A
Resolution And Low Ph
Length = 438
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 64 ASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFV 123
+ N +E L+ VW E EA + + + + PP+ + + GV P F
Sbjct: 189 GTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQ--IHSQDEPPLIDQLGFGVAPGFQ 246
Query: 124 EFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWA 183
F+ + + W +G SE + + + + + E
Sbjct: 247 TFVSCQEQRLIYLPPPWGDCKATTGDSEF------YDTYSITACRIDCETRYLVENCNCR 300
Query: 184 LGNVAGDSPSC---RDLVLSSGALMPLLAQLNEHSKLSMLRNAT 224
+ ++ GD+P C + + AL L+ + NE+ M N T
Sbjct: 301 MVHMPGDAPYCTPEQYKECADPALDFLVEKDNEYCVCEMPCNVT 344
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153
A T+ + I R + + GV+PRF + R D+ +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 154 RVVIEHGAVPMFVQLLSSGSDDVREQA 180
R +I G P V L D+++E+A
Sbjct: 128 RKIISRGFTPRAVGRL---HDELQERA 151
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153
A T+ + I R + + GV+PRF + R D+ +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 154 RVVIEHGAVPMFVQLLSSGSDDVREQA 180
R +I G P V L D+++E+A
Sbjct: 135 RKIISRGFTPRAVGRL---HDELQERA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,040,138
Number of Sequences: 62578
Number of extensions: 373419
Number of successful extensions: 1703
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 250
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)