Query 016714
Match_columns 384
No_of_seqs 308 out of 1925
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 6.6E-74 1.4E-78 486.6 23.6 369 7-381 5-385 (526)
2 KOG0166 Karyopherin (importin) 100.0 2.5E-70 5.3E-75 499.2 33.0 368 9-381 5-380 (514)
3 KOG0166 Karyopherin (importin) 100.0 4.5E-45 9.8E-50 333.7 27.6 295 74-372 109-408 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 4.7E-44 1E-48 304.6 16.6 305 73-381 113-430 (526)
5 PLN03200 cellulose synthase-in 100.0 4.3E-34 9.2E-39 297.3 32.5 305 73-381 188-546 (2102)
6 PLN03200 cellulose synthase-in 100.0 9.9E-32 2.1E-36 279.8 31.2 288 74-372 404-695 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2.9E-26 6.3E-31 197.8 22.0 280 72-359 165-447 (550)
8 KOG4224 Armadillo repeat prote 99.9 1.6E-24 3.5E-29 187.0 20.8 278 74-358 208-493 (550)
9 PF05804 KAP: Kinesin-associat 99.8 1.1E-18 2.5E-23 169.3 28.3 291 73-372 289-621 (708)
10 PF05804 KAP: Kinesin-associat 99.8 4.2E-17 9.1E-22 158.4 28.7 285 77-372 253-577 (708)
11 KOG4199 Uncharacterized conser 99.7 1.4E-15 3E-20 130.8 22.9 282 85-372 118-417 (461)
12 KOG0168 Putative ubiquitin fus 99.7 4.3E-16 9.4E-21 147.9 20.9 261 76-340 169-438 (1051)
13 KOG1048 Neural adherens juncti 99.7 8.2E-15 1.8E-19 139.6 25.0 280 74-358 233-684 (717)
14 KOG2122 Beta-catenin-binding p 99.7 1.5E-15 3.1E-20 151.0 20.6 268 90-360 313-603 (2195)
15 PF04826 Arm_2: Armadillo-like 99.7 1E-14 2.2E-19 126.2 20.8 197 113-316 8-206 (254)
16 KOG2122 Beta-catenin-binding p 99.7 8.8E-15 1.9E-19 145.6 20.3 300 70-372 231-573 (2195)
17 KOG4199 Uncharacterized conser 99.6 1.4E-13 3.1E-18 118.6 23.4 281 74-358 145-444 (461)
18 cd00020 ARM Armadillo/beta-cat 99.6 1.3E-14 2.9E-19 112.5 13.7 119 112-232 2-120 (120)
19 PRK09687 putative lyase; Provi 99.6 4.3E-13 9.3E-18 118.7 23.2 226 75-358 24-250 (280)
20 PF10508 Proteasom_PSMB: Prote 99.6 9E-13 1.9E-17 126.7 27.0 280 77-367 41-327 (503)
21 PF01749 IBB: Importin beta bi 99.6 3.8E-16 8.3E-21 114.2 2.8 91 6-96 3-96 (97)
22 PF10508 Proteasom_PSMB: Prote 99.6 3.7E-12 8.1E-17 122.5 28.7 285 74-363 119-425 (503)
23 KOG1048 Neural adherens juncti 99.6 3E-13 6.5E-18 129.1 18.6 239 118-359 234-596 (717)
24 cd00020 ARM Armadillo/beta-cat 99.5 1.7E-13 3.6E-18 106.3 13.7 115 243-358 6-120 (120)
25 PF04826 Arm_2: Armadillo-like 99.5 6.1E-13 1.3E-17 115.2 17.3 194 157-358 9-205 (254)
26 KOG4500 Rho/Rac GTPase guanine 99.5 8E-13 1.7E-17 117.5 17.9 306 74-383 87-420 (604)
27 PRK09687 putative lyase; Provi 99.5 2.8E-12 6E-17 113.6 19.1 207 118-369 24-230 (280)
28 cd00256 VATPase_H VATPase_H, r 99.4 6.9E-11 1.5E-15 109.0 23.0 280 75-358 102-425 (429)
29 KOG4500 Rho/Rac GTPase guanine 99.4 4.5E-12 9.8E-17 112.8 14.2 279 87-372 55-357 (604)
30 PRK13800 putative oxidoreducta 99.4 2.8E-10 6.1E-15 117.2 25.7 239 74-367 621-875 (897)
31 KOG1222 Kinesin associated pro 99.3 6.9E-10 1.5E-14 100.4 22.9 287 74-369 304-674 (791)
32 KOG2160 Armadillo/beta-catenin 99.3 4E-10 8.6E-15 99.3 17.9 187 83-272 92-281 (342)
33 KOG2759 Vacuolar H+-ATPase V1 99.3 8.8E-10 1.9E-14 98.4 19.3 280 76-359 116-439 (442)
34 KOG1293 Proteins containing ar 99.2 4.3E-09 9.4E-14 98.8 21.9 113 79-192 14-128 (678)
35 KOG0168 Putative ubiquitin fus 99.2 1.3E-09 2.9E-14 104.6 18.8 250 119-372 169-427 (1051)
36 PRK13800 putative oxidoreducta 99.2 7.3E-09 1.6E-13 106.9 25.5 229 74-355 652-896 (897)
37 PF01602 Adaptin_N: Adaptin N 99.2 1.1E-09 2.4E-14 107.4 17.4 255 74-358 42-296 (526)
38 KOG1241 Karyopherin (importin) 99.2 1.1E-09 2.4E-14 104.1 16.1 277 76-358 174-477 (859)
39 KOG2023 Nuclear transport rece 99.1 6E-10 1.3E-14 104.3 12.7 262 74-358 128-463 (885)
40 KOG2171 Karyopherin (importin) 99.1 3E-08 6.5E-13 98.9 23.9 287 75-369 119-473 (1075)
41 KOG2160 Armadillo/beta-catenin 99.1 5.6E-09 1.2E-13 92.1 16.2 183 132-315 97-282 (342)
42 PF01602 Adaptin_N: Adaptin N 99.1 7.3E-09 1.6E-13 101.5 18.8 250 75-358 80-333 (526)
43 PF03224 V-ATPase_H_N: V-ATPas 99.1 6.2E-09 1.3E-13 94.5 16.0 232 118-351 56-307 (312)
44 PTZ00429 beta-adaptin; Provisi 99.1 3.6E-07 7.7E-12 91.0 28.8 216 76-315 70-285 (746)
45 KOG1517 Guanine nucleotide bin 99.1 2.3E-08 5E-13 98.2 19.8 273 89-372 451-746 (1387)
46 PTZ00429 beta-adaptin; Provisi 99.0 3.9E-07 8.3E-12 90.7 28.6 182 74-274 105-286 (746)
47 KOG0946 ER-Golgi vesicle-tethe 99.0 2.1E-07 4.5E-12 89.3 24.7 293 74-372 22-360 (970)
48 KOG1293 Proteins containing ar 99.0 2.3E-08 5E-13 94.0 17.5 283 85-370 192-545 (678)
49 KOG1222 Kinesin associated pro 99.0 4.3E-08 9.2E-13 89.1 18.3 271 87-372 276-548 (791)
50 PF03224 V-ATPase_H_N: V-ATPas 99.0 9.3E-09 2E-13 93.4 13.7 208 162-372 57-284 (312)
51 cd00256 VATPase_H VATPase_H, r 99.0 2.2E-07 4.9E-12 86.0 22.8 303 75-381 54-412 (429)
52 KOG3678 SARM protein (with ste 98.9 5.9E-08 1.3E-12 87.9 16.9 266 74-356 180-450 (832)
53 KOG1517 Guanine nucleotide bin 98.9 8.9E-08 1.9E-12 94.2 17.4 254 75-332 473-749 (1387)
54 KOG2023 Nuclear transport rece 98.9 5.6E-08 1.2E-12 91.5 15.4 270 75-358 175-505 (885)
55 KOG2171 Karyopherin (importin) 98.9 6.2E-07 1.3E-11 89.8 22.6 274 79-358 164-504 (1075)
56 KOG1241 Karyopherin (importin) 98.8 4.8E-07 1E-11 86.6 17.4 278 76-359 366-669 (859)
57 KOG2973 Uncharacterized conser 98.7 4.2E-06 9.1E-11 72.3 20.7 271 75-357 4-313 (353)
58 KOG2759 Vacuolar H+-ATPase V1 98.7 9.6E-07 2.1E-11 79.4 17.1 234 78-316 160-439 (442)
59 KOG0946 ER-Golgi vesicle-tethe 98.7 8.1E-06 1.8E-10 78.7 24.2 288 74-362 61-403 (970)
60 PF00514 Arm: Armadillo/beta-c 98.6 1.7E-07 3.7E-12 57.1 5.3 41 317-358 1-41 (41)
61 PF00514 Arm: Armadillo/beta-c 98.6 1.4E-07 3.1E-12 57.4 4.7 41 149-189 1-41 (41)
62 PF14664 RICTOR_N: Rapamycin-i 98.5 3E-05 6.5E-10 71.5 21.5 274 77-358 28-364 (371)
63 TIGR02270 conserved hypothetic 98.5 3.7E-05 8E-10 71.8 21.9 219 75-358 55-296 (410)
64 PF10165 Ric8: Guanine nucleot 98.5 3.1E-05 6.7E-10 73.6 21.3 268 95-365 2-344 (446)
65 COG5215 KAP95 Karyopherin (imp 98.5 1.5E-05 3.2E-10 74.5 18.2 273 74-358 321-668 (858)
66 COG5369 Uncharacterized conser 98.5 3.3E-06 7.2E-11 78.0 12.8 242 112-356 426-739 (743)
67 COG5215 KAP95 Karyopherin (imp 98.4 6.8E-06 1.5E-10 76.6 14.8 265 87-358 191-479 (858)
68 KOG2973 Uncharacterized conser 98.4 1.8E-05 3.9E-10 68.5 15.9 242 119-372 5-286 (353)
69 KOG1059 Vesicle coat complex A 98.4 0.00012 2.5E-09 70.4 21.6 218 76-316 146-366 (877)
70 KOG4646 Uncharacterized conser 98.4 4.3E-06 9.4E-11 63.3 9.7 117 117-236 16-132 (173)
71 COG1413 FOG: HEAT repeat [Ener 98.4 6.3E-05 1.4E-09 69.3 19.6 230 75-359 44-305 (335)
72 COG5231 VMA13 Vacuolar H+-ATPa 98.3 3.5E-05 7.5E-10 67.0 15.3 224 132-358 163-428 (432)
73 KOG3678 SARM protein (with ste 98.3 1.9E-05 4.2E-10 72.0 14.2 186 110-300 173-362 (832)
74 KOG4646 Uncharacterized conser 98.3 1.9E-05 4.1E-10 59.9 11.7 131 73-211 15-146 (173)
75 COG5369 Uncharacterized conser 98.3 6.6E-06 1.4E-10 76.1 10.4 201 136-337 405-617 (743)
76 PF13646 HEAT_2: HEAT repeats; 98.3 3.1E-06 6.6E-11 61.3 6.7 87 119-228 1-88 (88)
77 KOG1062 Vesicle coat complex A 98.2 0.00033 7.1E-09 68.2 21.4 101 245-358 314-414 (866)
78 PF05536 Neurochondrin: Neuroc 98.2 8.4E-05 1.8E-09 72.2 17.8 235 74-314 5-260 (543)
79 KOG1059 Vesicle coat complex A 98.2 0.0002 4.3E-09 68.8 19.1 218 118-358 145-365 (877)
80 PF12348 CLASP_N: CLASP N term 98.2 1.9E-05 4.2E-10 68.4 11.6 189 84-280 17-213 (228)
81 KOG1240 Protein kinase contain 98.2 4.9E-05 1.1E-09 76.7 15.0 261 75-358 463-725 (1431)
82 COG1413 FOG: HEAT repeat [Ener 98.2 8.7E-05 1.9E-09 68.4 15.9 188 117-358 43-242 (335)
83 KOG0213 Splicing factor 3b, su 98.2 2.1E-05 4.5E-10 75.5 11.7 234 75-315 717-954 (1172)
84 PF13646 HEAT_2: HEAT repeats; 98.2 5.3E-06 1.1E-10 60.1 6.2 87 246-354 1-88 (88)
85 KOG1789 Endocytosis protein RM 98.2 0.00081 1.7E-08 67.5 22.5 140 90-234 1741-1885(2235)
86 TIGR02270 conserved hypothetic 98.2 0.00025 5.5E-09 66.3 18.5 199 118-368 55-275 (410)
87 KOG1824 TATA-binding protein-i 98.2 0.00017 3.6E-09 71.3 17.6 278 78-367 9-295 (1233)
88 PF13513 HEAT_EZ: HEAT-like re 98.1 4.5E-06 9.8E-11 54.5 4.9 55 132-187 1-55 (55)
89 COG5181 HSH155 U2 snRNP splice 98.1 0.00011 2.3E-09 69.4 14.8 258 75-358 605-870 (975)
90 KOG1824 TATA-binding protein-i 98.1 0.00031 6.8E-09 69.5 18.4 231 76-338 819-1054(1233)
91 KOG0213 Splicing factor 3b, su 98.1 0.00015 3.3E-09 69.9 15.9 258 77-358 802-1065(1172)
92 KOG1242 Protein containing ada 98.1 0.00065 1.4E-08 64.6 19.7 240 118-372 97-339 (569)
93 PF13513 HEAT_EZ: HEAT-like re 98.1 7.9E-06 1.7E-10 53.3 5.2 55 300-356 1-55 (55)
94 KOG0212 Uncharacterized conser 98.1 0.00049 1.1E-08 64.5 18.5 274 75-363 164-450 (675)
95 KOG1062 Vesicle coat complex A 98.1 0.00099 2.1E-08 65.0 20.7 65 288-358 315-379 (866)
96 KOG1061 Vesicle coat complex A 98.0 0.00017 3.7E-09 70.0 15.2 264 75-358 87-379 (734)
97 KOG1789 Endocytosis protein RM 98.0 0.0017 3.6E-08 65.3 22.0 263 71-340 1768-2142(2235)
98 KOG4413 26S proteasome regulat 98.0 0.0036 7.9E-08 55.1 21.7 278 77-358 85-377 (524)
99 KOG1242 Protein containing ada 98.0 0.0011 2.4E-08 63.0 19.4 268 76-358 136-444 (569)
100 PF05536 Neurochondrin: Neuroc 98.0 0.00063 1.4E-08 66.2 18.2 235 118-358 6-261 (543)
101 PF12348 CLASP_N: CLASP N term 98.0 7.3E-05 1.6E-09 64.8 10.8 189 170-365 17-213 (228)
102 PF09759 Atx10homo_assoc: Spin 98.0 7.4E-05 1.6E-09 54.7 8.7 69 302-370 2-71 (102)
103 KOG1061 Vesicle coat complex A 98.0 8E-05 1.7E-09 72.2 11.4 71 76-151 123-193 (734)
104 PF10165 Ric8: Guanine nucleot 98.0 0.0016 3.5E-08 62.0 20.1 232 84-318 42-340 (446)
105 smart00185 ARM Armadillo/beta- 97.9 3.2E-05 6.9E-10 46.9 5.2 39 150-188 2-40 (41)
106 KOG2734 Uncharacterized conser 97.9 0.0094 2E-07 54.6 22.4 229 107-338 115-371 (536)
107 smart00185 ARM Armadillo/beta- 97.8 5.6E-05 1.2E-09 45.7 5.3 39 319-358 3-41 (41)
108 KOG2734 Uncharacterized conser 97.8 0.006 1.3E-07 55.8 19.8 241 72-314 123-399 (536)
109 KOG4413 26S proteasome regulat 97.8 0.0067 1.4E-07 53.5 19.1 293 74-372 128-453 (524)
110 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.0014 3E-08 57.4 14.8 229 82-315 157-428 (432)
111 PF09759 Atx10homo_assoc: Spin 97.8 0.00011 2.4E-09 53.8 7.1 68 134-201 2-71 (102)
112 KOG0567 HEAT repeat-containing 97.8 0.0042 9.1E-08 53.1 16.9 198 116-357 66-279 (289)
113 KOG1077 Vesicle coat complex A 97.7 0.007 1.5E-07 58.5 19.9 266 75-363 75-404 (938)
114 KOG2259 Uncharacterized conser 97.7 0.0016 3.4E-08 62.3 15.1 194 163-369 201-453 (823)
115 KOG2259 Uncharacterized conser 97.7 0.00041 8.8E-09 66.2 10.7 233 118-369 235-486 (823)
116 COG5181 HSH155 U2 snRNP splice 97.7 0.0014 3E-08 62.3 14.0 208 84-316 656-871 (975)
117 KOG0212 Uncharacterized conser 97.7 0.0064 1.4E-07 57.3 18.1 266 76-362 210-484 (675)
118 COG5096 Vesicle coat complex, 97.6 0.018 4E-07 57.2 22.0 104 75-190 93-196 (757)
119 KOG0567 HEAT repeat-containing 97.5 0.016 3.6E-07 49.6 17.4 214 87-358 18-249 (289)
120 PF08569 Mo25: Mo25-like; Int 97.5 0.061 1.3E-06 49.0 22.2 241 112-357 71-331 (335)
121 KOG1991 Nuclear transport rece 97.5 0.012 2.6E-07 59.0 18.8 263 88-358 432-711 (1010)
122 PF05004 IFRD: Interferon-rela 97.5 0.011 2.3E-07 53.5 16.9 191 76-273 45-257 (309)
123 KOG1077 Vesicle coat complex A 97.5 0.042 9.2E-07 53.4 21.2 110 238-358 323-433 (938)
124 KOG1060 Vesicle coat complex A 97.5 0.069 1.5E-06 52.7 22.6 179 75-273 109-316 (968)
125 PF08569 Mo25: Mo25-like; Int 97.4 0.0047 1E-07 56.2 13.7 212 155-368 71-295 (335)
126 COG5096 Vesicle coat complex, 97.4 0.026 5.6E-07 56.2 19.4 140 76-233 57-196 (757)
127 PF14664 RICTOR_N: Rapamycin-i 97.4 0.027 5.9E-07 52.2 18.5 232 118-358 26-269 (371)
128 KOG4151 Myosin assembly protei 97.3 0.0044 9.6E-08 60.7 12.8 215 74-294 504-720 (748)
129 KOG2062 26S proteasome regulat 97.3 0.0081 1.8E-07 58.4 14.1 88 254-358 565-653 (929)
130 KOG1967 DNA repair/transcripti 97.3 0.0026 5.7E-08 63.1 11.1 191 161-357 816-1023(1030)
131 KOG4535 HEAT and armadillo rep 97.2 0.00086 1.9E-08 61.8 6.2 196 172-372 403-619 (728)
132 PF11841 DUF3361: Domain of un 97.1 0.025 5.3E-07 45.1 13.2 124 194-318 3-134 (160)
133 KOG1060 Vesicle coat complex A 97.1 0.056 1.2E-06 53.2 17.9 259 75-366 72-358 (968)
134 KOG1248 Uncharacterized conser 97.1 0.1 2.2E-06 53.8 20.2 242 122-368 658-909 (1176)
135 PF06371 Drf_GBD: Diaphanous G 97.1 0.004 8.7E-08 52.0 9.2 147 35-188 31-186 (187)
136 KOG2274 Predicted importin 9 [ 97.1 0.033 7.2E-07 55.6 16.1 233 125-365 457-696 (1005)
137 KOG2274 Predicted importin 9 [ 97.0 0.035 7.5E-07 55.4 16.0 234 85-326 461-700 (1005)
138 PF12717 Cnd1: non-SMC mitotic 97.0 0.064 1.4E-06 44.4 15.3 110 87-212 1-111 (178)
139 COG5240 SEC21 Vesicle coat com 97.0 0.027 5.9E-07 53.4 14.0 64 83-151 273-336 (898)
140 KOG4151 Myosin assembly protei 96.9 0.011 2.3E-07 58.2 11.6 221 145-372 489-713 (748)
141 KOG2956 CLIP-associating prote 96.9 0.091 2E-06 48.8 16.8 174 174-358 301-477 (516)
142 PF12460 MMS19_C: RNAPII trans 96.9 0.076 1.6E-06 50.4 17.2 205 118-335 190-413 (415)
143 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0034 7.3E-08 46.0 6.3 85 177-264 3-88 (97)
144 KOG1058 Vesicle coat complex C 96.9 0.13 2.8E-06 50.5 18.4 241 87-362 219-467 (948)
145 KOG1240 Protein kinase contain 96.9 0.026 5.7E-07 57.9 14.2 230 119-358 424-685 (1431)
146 PF12717 Cnd1: non-SMC mitotic 96.9 0.063 1.4E-06 44.4 14.6 91 132-233 2-93 (178)
147 KOG1943 Beta-tubulin folding c 96.9 0.033 7.2E-07 56.6 14.8 224 117-363 341-578 (1133)
148 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0029 6.3E-08 46.3 5.7 92 220-313 3-94 (97)
149 PF12460 MMS19_C: RNAPII trans 96.8 0.039 8.5E-07 52.4 14.6 203 76-293 191-413 (415)
150 PF08045 CDC14: Cell division 96.8 0.062 1.3E-06 46.6 14.2 100 133-232 106-207 (257)
151 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.002 4.4E-08 48.5 4.6 72 286-358 43-115 (119)
152 KOG4653 Uncharacterized conser 96.8 0.044 9.5E-07 54.5 14.4 226 121-357 731-963 (982)
153 KOG1967 DNA repair/transcripti 96.8 0.017 3.6E-07 57.7 11.7 187 119-312 817-1021(1030)
154 PF05004 IFRD: Interferon-rela 96.8 0.24 5.2E-06 44.9 18.2 191 162-358 45-257 (309)
155 KOG4535 HEAT and armadillo rep 96.7 0.0027 5.9E-08 58.6 5.5 153 117-273 433-603 (728)
156 COG5240 SEC21 Vesicle coat com 96.7 0.24 5.2E-06 47.3 18.1 141 162-314 266-406 (898)
157 KOG1991 Nuclear transport rece 96.7 0.11 2.5E-06 52.4 16.6 238 117-359 410-672 (1010)
158 PF11841 DUF3361: Domain of un 96.7 0.037 8E-07 44.1 10.9 125 110-236 4-135 (160)
159 KOG4653 Uncharacterized conser 96.7 0.046 9.9E-07 54.3 13.6 193 74-279 727-924 (982)
160 PF05918 API5: Apoptosis inhib 96.7 0.15 3.3E-06 49.3 16.8 267 74-367 59-354 (556)
161 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0039 8.4E-08 47.0 4.9 71 118-188 44-114 (119)
162 PF14668 RICTOR_V: Rapamycin-i 96.6 0.019 4.1E-07 39.3 7.8 67 303-371 4-70 (73)
163 KOG1078 Vesicle coat complex C 96.6 0.17 3.6E-06 50.0 16.6 260 76-357 247-531 (865)
164 KOG0915 Uncharacterized conser 96.6 0.42 9E-06 50.9 20.2 287 76-372 1000-1321(1702)
165 KOG1248 Uncharacterized conser 96.6 0.22 4.7E-06 51.5 18.0 222 84-315 664-898 (1176)
166 KOG1943 Beta-tubulin folding c 96.6 0.39 8.4E-06 49.3 19.4 148 75-233 342-501 (1133)
167 KOG3036 Protein involved in ce 96.5 0.27 5.8E-06 41.9 15.5 144 88-233 93-248 (293)
168 PF12719 Cnd3: Nuclear condens 96.5 0.069 1.5E-06 48.2 12.9 169 76-255 28-208 (298)
169 KOG2956 CLIP-associating prote 96.4 0.14 3E-06 47.6 14.4 185 77-272 289-476 (516)
170 PF13764 E3_UbLigase_R4: E3 ub 96.4 0.89 1.9E-05 46.4 21.3 238 115-358 115-406 (802)
171 KOG0915 Uncharacterized conser 96.4 0.052 1.1E-06 57.2 12.5 219 118-340 957-1184(1702)
172 PF08045 CDC14: Cell division 96.3 0.092 2E-06 45.6 11.8 102 89-191 106-209 (257)
173 PF06025 DUF913: Domain of Unk 96.3 0.18 3.9E-06 47.0 14.6 145 107-252 95-252 (379)
174 PF02985 HEAT: HEAT repeat; I 96.2 0.0072 1.6E-07 33.8 3.3 29 118-147 1-29 (31)
175 PF02985 HEAT: HEAT repeat; I 96.2 0.0068 1.5E-07 34.0 3.1 28 162-189 2-29 (31)
176 KOG0414 Chromosome condensatio 96.1 0.068 1.5E-06 55.0 11.7 142 117-274 919-1065(1251)
177 PF06025 DUF913: Domain of Unk 96.1 0.41 8.9E-06 44.6 16.0 191 137-340 3-208 (379)
178 KOG0211 Protein phosphatase 2A 96.0 0.43 9.4E-06 48.2 16.7 148 213-366 408-557 (759)
179 KOG3665 ZYG-1-like serine/thre 96.0 0.45 9.6E-06 48.1 17.0 171 183-353 494-692 (699)
180 PF14668 RICTOR_V: Rapamycin-i 96.0 0.024 5.3E-07 38.8 5.7 65 135-201 4-69 (73)
181 PF11865 DUF3385: Domain of un 96.0 0.071 1.5E-06 43.2 9.4 147 117-272 10-156 (160)
182 KOG0211 Protein phosphatase 2A 96.0 0.34 7.5E-06 48.9 15.9 268 76-358 357-625 (759)
183 PF05918 API5: Apoptosis inhib 96.0 0.22 4.9E-06 48.2 14.0 130 164-312 27-159 (556)
184 KOG3036 Protein involved in ce 95.9 0.42 9.1E-06 40.8 13.6 142 221-365 97-253 (293)
185 PF04078 Rcd1: Cell differenti 95.9 0.53 1.1E-05 40.8 14.6 204 173-381 8-241 (262)
186 PF04078 Rcd1: Cell differenti 95.8 0.3 6.4E-06 42.3 12.4 142 90-233 66-219 (262)
187 PF01603 B56: Protein phosphat 95.7 0.43 9.2E-06 45.2 14.8 244 110-367 126-379 (409)
188 KOG1820 Microtubule-associated 95.7 0.49 1.1E-05 48.2 15.7 186 77-273 256-443 (815)
189 PF11701 UNC45-central: Myosin 95.7 0.043 9.2E-07 44.3 7.0 147 203-354 4-155 (157)
190 PF13764 E3_UbLigase_R4: E3 ub 95.6 0.54 1.2E-05 47.9 15.6 239 117-372 84-377 (802)
191 KOG2062 26S proteasome regulat 95.5 1.9 4.2E-05 42.7 18.1 158 160-340 519-677 (929)
192 PF12719 Cnd3: Nuclear condens 95.4 0.98 2.1E-05 40.8 15.5 171 117-298 26-209 (298)
193 KOG1058 Vesicle coat complex C 95.4 0.64 1.4E-05 46.0 14.5 114 242-362 315-429 (948)
194 KOG0414 Chromosome condensatio 95.4 0.15 3.2E-06 52.6 10.8 142 161-316 920-1065(1251)
195 PF08506 Cse1: Cse1; InterPro 95.2 0.42 9.2E-06 44.4 12.4 209 133-353 111-370 (370)
196 KOG1566 Conserved protein Mo25 95.2 2.1 4.7E-05 38.0 15.9 201 155-358 74-286 (342)
197 PF01603 B56: Protein phosphat 95.1 0.56 1.2E-05 44.4 13.4 235 75-323 134-378 (409)
198 KOG2611 Neurochondrin/leucine- 95.1 2.9 6.2E-05 39.5 17.1 234 75-314 12-273 (698)
199 PF12530 DUF3730: Protein of u 95.0 2.2 4.8E-05 37.0 19.2 202 119-340 2-215 (234)
200 KOG1820 Microtubule-associated 94.9 0.61 1.3E-05 47.5 13.6 197 163-368 256-454 (815)
201 PF07814 WAPL: Wings apart-lik 94.8 0.94 2E-05 42.1 13.5 244 119-372 23-313 (361)
202 COG5656 SXM1 Importin, protein 94.7 2.5 5.5E-05 42.0 16.2 275 74-358 408-711 (970)
203 COG5116 RPN2 26S proteasome re 94.5 0.43 9.3E-06 45.7 10.4 150 123-296 522-672 (926)
204 COG5218 YCG1 Chromosome conden 94.5 0.77 1.7E-05 44.2 12.0 107 239-353 86-194 (885)
205 PF04063 DUF383: Domain of unk 94.4 0.15 3.2E-06 42.5 6.7 108 171-278 6-137 (192)
206 KOG1243 Protein kinase [Genera 94.4 0.19 4E-06 49.2 8.0 183 74-271 330-513 (690)
207 KOG2032 Uncharacterized conser 94.3 5 0.00011 38.0 19.1 256 83-357 267-530 (533)
208 COG5098 Chromosome condensatio 94.3 1.2 2.6E-05 43.9 13.0 145 117-277 892-1041(1128)
209 PF04063 DUF383: Domain of unk 94.2 0.27 5.9E-06 41.0 7.8 123 217-340 9-159 (192)
210 PF11701 UNC45-central: Myosin 94.1 0.27 5.8E-06 39.7 7.5 145 161-312 4-156 (157)
211 PF13251 DUF4042: Domain of un 94.1 1.4 3.1E-05 36.3 11.7 141 134-274 2-175 (182)
212 COG5116 RPN2 26S proteasome re 94.1 0.98 2.1E-05 43.4 11.8 149 82-256 524-674 (926)
213 KOG2025 Chromosome condensatio 94.1 0.56 1.2E-05 46.1 10.5 128 219-355 62-190 (892)
214 PF12830 Nipped-B_C: Sister ch 93.8 3.4 7.3E-05 34.4 14.5 146 75-233 9-168 (187)
215 KOG1078 Vesicle coat complex C 93.7 4.2 9.2E-05 40.7 15.7 184 161-366 246-429 (865)
216 KOG2025 Chromosome condensatio 93.5 0.36 7.8E-06 47.3 8.1 107 115-228 83-189 (892)
217 KOG1243 Protein kinase [Genera 93.4 4.6 0.0001 39.9 15.4 257 77-357 257-514 (690)
218 KOG2137 Protein kinase [Signal 93.4 2.2 4.7E-05 42.2 13.2 127 202-340 389-520 (700)
219 PF01347 Vitellogenin_N: Lipop 93.4 1.3 2.8E-05 44.6 12.5 194 118-346 396-610 (618)
220 PF14500 MMS19_N: Dos2-interac 93.3 5.5 0.00012 35.1 15.4 222 79-317 4-239 (262)
221 PF06371 Drf_GBD: Diaphanous G 93.2 0.49 1.1E-05 39.3 7.8 109 119-231 68-186 (187)
222 KOG2999 Regulator of Rac1, req 93.0 4.4 9.6E-05 38.9 14.1 158 75-236 84-246 (713)
223 PF12231 Rif1_N: Rap1-interact 92.7 8.6 0.00019 35.9 17.5 257 85-350 4-295 (372)
224 PF07814 WAPL: Wings apart-lik 92.7 5.7 0.00012 36.9 14.7 210 74-286 21-312 (361)
225 PF08324 PUL: PUL domain; Int 92.4 2.4 5.2E-05 37.5 11.6 159 120-281 66-239 (268)
226 PF10363 DUF2435: Protein of u 92.3 0.81 1.7E-05 33.1 6.8 79 288-369 5-84 (92)
227 COG5656 SXM1 Importin, protein 91.9 15 0.00032 36.9 17.8 147 116-268 407-566 (970)
228 PF10363 DUF2435: Protein of u 91.9 0.85 1.8E-05 33.0 6.5 72 246-319 5-76 (92)
229 PF14500 MMS19_N: Dos2-interac 91.8 8.7 0.00019 33.9 17.3 215 121-358 3-237 (262)
230 KOG2999 Regulator of Rac1, req 91.6 5.8 0.00013 38.2 13.1 154 162-317 85-244 (713)
231 KOG2032 Uncharacterized conser 91.6 1.1 2.3E-05 42.3 8.4 142 170-314 268-414 (533)
232 KOG1949 Uncharacterized conser 91.2 3.5 7.6E-05 40.8 11.5 146 120-273 177-331 (1005)
233 KOG2933 Uncharacterized conser 91.0 1.7 3.7E-05 38.5 8.6 140 205-358 91-234 (334)
234 smart00638 LPD_N Lipoprotein N 91.0 6.3 0.00014 39.2 14.0 156 161-345 394-565 (574)
235 PF11864 DUF3384: Domain of un 90.8 16 0.00035 35.3 22.5 247 89-360 5-287 (464)
236 PF04388 Hamartin: Hamartin pr 90.8 6.6 0.00014 39.7 13.8 157 75-253 5-161 (668)
237 KOG2137 Protein kinase [Signal 90.7 2.1 4.6E-05 42.3 9.7 134 159-299 388-521 (700)
238 PF12830 Nipped-B_C: Sister ch 90.6 7.1 0.00015 32.5 11.8 71 118-194 9-79 (187)
239 PF08506 Cse1: Cse1; InterPro 90.4 5.3 0.00011 37.2 11.9 141 119-268 212-370 (370)
240 KOG1020 Sister chromatid cohes 90.4 2.1 4.5E-05 45.9 9.9 130 221-361 795-924 (1692)
241 PF10521 DUF2454: Protein of u 90.3 2.7 5.8E-05 37.6 9.7 138 118-256 120-277 (282)
242 KOG2611 Neurochondrin/leucine- 90.3 17 0.00037 34.6 17.8 191 122-317 16-227 (698)
243 PF11707 Npa1: Ribosome 60S bi 90.1 11 0.00023 34.6 13.7 158 76-234 58-239 (330)
244 PF13251 DUF4042: Domain of un 90.1 2.5 5.5E-05 34.9 8.5 139 176-317 2-176 (182)
245 COG5098 Chromosome condensatio 89.8 1.7 3.6E-05 42.9 8.1 135 172-320 908-1042(1128)
246 KOG3665 ZYG-1-like serine/thre 89.5 5.3 0.00011 40.6 11.9 155 141-296 494-677 (699)
247 PRK14707 hypothetical protein; 89.3 45 0.00098 38.0 19.0 287 75-366 206-495 (2710)
248 PF04869 Uso1_p115_head: Uso1 89.3 17 0.00036 33.0 14.0 153 132-315 52-231 (312)
249 PF06685 DUF1186: Protein of u 89.0 15 0.00032 32.1 14.1 118 118-259 32-169 (249)
250 PF11538 Snurportin1: Snurport 88.7 0.43 9.4E-06 28.2 2.2 38 11-49 2-39 (40)
251 PF08167 RIX1: rRNA processing 88.7 11 0.00023 30.7 11.2 114 117-236 25-147 (165)
252 COG5209 RCD1 Uncharacterized p 88.6 3 6.6E-05 35.2 7.8 143 89-233 115-269 (315)
253 KOG1566 Conserved protein Mo25 88.5 18 0.00039 32.4 13.9 201 112-316 74-287 (342)
254 cd03569 VHS_Hrs_Vps27p VHS dom 88.3 1.8 4E-05 34.1 6.3 74 74-147 41-114 (142)
255 PF12031 DUF3518: Domain of un 88.1 1.7 3.6E-05 37.3 6.1 82 89-172 139-228 (257)
256 PF10274 ParcG: Parkin co-regu 88.0 13 0.00028 30.7 11.0 118 242-362 36-169 (183)
257 KOG1993 Nuclear transport rece 88.0 33 0.00072 34.9 18.1 278 75-368 527-822 (978)
258 PF08167 RIX1: rRNA processing 87.9 11 0.00025 30.5 10.9 115 239-358 20-143 (165)
259 KOG2933 Uncharacterized conser 87.9 2.3 5E-05 37.7 7.1 100 203-314 130-233 (334)
260 PF04821 TIMELESS: Timeless pr 87.7 13 0.00028 33.0 11.9 190 71-317 10-210 (266)
261 KOG1020 Sister chromatid cohes 87.6 13 0.00029 40.2 13.3 143 160-313 816-958 (1692)
262 PF14726 RTTN_N: Rotatin, an a 87.4 7.3 0.00016 28.5 8.4 68 284-353 28-95 (98)
263 cd03568 VHS_STAM VHS domain fa 87.3 2.4 5.1E-05 33.6 6.3 74 74-147 37-110 (144)
264 PF06685 DUF1186: Protein of u 87.3 19 0.00042 31.4 13.4 112 243-372 72-198 (249)
265 KOG2005 26S proteasome regulat 86.6 29 0.00063 34.5 14.0 74 288-369 642-716 (878)
266 PF11707 Npa1: Ribosome 60S bi 86.5 26 0.00056 32.1 20.5 155 119-275 58-239 (330)
267 PF14225 MOR2-PAG1_C: Cell mor 86.5 22 0.00048 31.3 16.2 169 174-358 76-254 (262)
268 PLN03076 ARF guanine nucleotid 86.5 65 0.0014 36.7 19.9 102 85-190 1148-1254(1780)
269 PRK14707 hypothetical protein; 86.3 68 0.0015 36.8 19.6 276 91-372 181-459 (2710)
270 PF14225 MOR2-PAG1_C: Cell mor 86.3 23 0.00049 31.3 17.7 214 80-315 13-254 (262)
271 KOG0891 DNA-dependent protein 86.2 6.6 0.00014 45.1 11.0 263 84-358 491-763 (2341)
272 smart00288 VHS Domain present 86.1 3 6.4E-05 32.6 6.3 74 74-147 37-111 (133)
273 KOG1822 Uncharacterized conser 86.1 51 0.0011 37.1 16.7 229 119-357 878-1126(2067)
274 KOG0413 Uncharacterized conser 85.7 3 6.6E-05 42.7 7.4 130 174-316 945-1074(1529)
275 smart00638 LPD_N Lipoprotein N 85.7 4.5 9.7E-05 40.3 8.9 110 244-365 393-516 (574)
276 COG5218 YCG1 Chromosome conden 85.5 12 0.00027 36.4 10.9 104 116-226 90-193 (885)
277 PF11864 DUF3384: Domain of un 84.5 41 0.00088 32.6 20.9 91 259-357 230-329 (464)
278 KOG4464 Signaling protein RIC- 84.3 36 0.00078 31.8 15.8 156 77-234 48-233 (532)
279 KOG4464 Signaling protein RIC- 84.1 29 0.00062 32.4 12.2 153 206-358 49-231 (532)
280 PF12726 SEN1_N: SEN1 N termin 83.6 26 0.00055 36.2 13.4 142 78-234 445-587 (727)
281 cd03561 VHS VHS domain family; 83.5 6.7 0.00015 30.5 7.3 74 74-147 37-112 (133)
282 cd03567 VHS_GGA VHS domain fam 83.3 5 0.00011 31.5 6.4 74 74-147 38-116 (139)
283 KOG2676 Uncharacterized conser 83.1 1 2.2E-05 40.6 2.7 78 305-382 375-460 (478)
284 PF10521 DUF2454: Protein of u 82.9 14 0.0003 33.1 9.9 136 203-340 120-277 (282)
285 KOG1788 Uncharacterized conser 82.2 50 0.0011 35.0 14.0 235 95-338 663-960 (2799)
286 KOG0301 Phospholipase A2-activ 81.9 58 0.0013 32.5 15.9 160 132-296 558-726 (745)
287 cd03561 VHS VHS domain family; 81.6 23 0.00049 27.5 10.0 96 254-358 14-112 (133)
288 cd03569 VHS_Hrs_Vps27p VHS dom 81.6 6.7 0.00015 31.0 6.6 74 160-233 41-115 (142)
289 KOG2005 26S proteasome regulat 81.5 61 0.0013 32.4 17.0 135 74-211 48-214 (878)
290 PF11865 DUF3385: Domain of un 81.3 21 0.00046 28.8 9.6 111 76-188 12-156 (160)
291 COG5209 RCD1 Uncharacterized p 80.7 7.2 0.00016 33.0 6.6 97 260-358 116-218 (315)
292 PF12530 DUF3730: Protein of u 80.4 38 0.00081 29.3 18.1 201 77-300 3-217 (234)
293 cd08050 TAF6 TATA Binding Prot 79.7 30 0.00065 31.9 11.2 103 76-190 180-298 (343)
294 PF03378 CAS_CSE1: CAS/CSE pro 79.4 41 0.00089 32.2 12.2 188 172-368 84-283 (435)
295 PF12074 DUF3554: Domain of un 79.2 37 0.00081 31.2 11.8 203 114-320 19-240 (339)
296 PF08324 PUL: PUL domain; Int 78.8 11 0.00023 33.4 7.8 153 78-234 67-233 (268)
297 PF01347 Vitellogenin_N: Lipop 78.6 77 0.0017 31.9 17.3 94 243-355 485-586 (618)
298 KOG1822 Uncharacterized conser 78.3 1.3E+02 0.0028 34.2 17.9 274 75-356 877-1187(2067)
299 PF14726 RTTN_N: Rotatin, an a 78.1 24 0.00052 25.8 9.1 92 90-184 3-95 (98)
300 PF10274 ParcG: Parkin co-regu 77.5 22 0.00047 29.4 8.4 74 117-192 38-112 (183)
301 cd03568 VHS_STAM VHS domain fa 77.1 13 0.00029 29.4 7.0 75 160-234 37-112 (144)
302 KOG1988 Uncharacterized conser 76.9 92 0.002 32.1 13.9 251 77-358 27-281 (970)
303 PF12031 DUF3518: Domain of un 76.8 6.1 0.00013 33.9 5.2 80 133-213 139-227 (257)
304 smart00288 VHS Domain present 75.7 12 0.00027 29.1 6.4 73 161-233 38-112 (133)
305 KOG0392 SNF2 family DNA-depend 75.1 26 0.00057 37.5 10.0 235 74-318 77-328 (1549)
306 PF12783 Sec7_N: Guanine nucle 74.6 31 0.00068 27.9 8.9 88 109-200 65-157 (168)
307 KOG1525 Sister chromatid cohes 73.8 1.5E+02 0.0032 32.7 20.3 79 285-365 258-336 (1266)
308 PF08216 CTNNBL: Catenin-beta- 73.7 5.8 0.00013 29.4 3.8 44 261-305 63-106 (108)
309 KOG0413 Uncharacterized conser 73.2 15 0.00033 38.0 7.6 123 220-358 948-1073(1529)
310 smart00567 EZ_HEAT E-Z type HE 72.3 6.3 0.00014 21.3 3.0 24 344-369 2-25 (30)
311 cd08050 TAF6 TATA Binding Prot 71.8 39 0.00084 31.2 9.7 124 164-298 182-321 (343)
312 KOG2549 Transcription initiati 71.8 99 0.0021 30.2 12.3 144 76-232 209-370 (576)
313 KOG1832 HIV-1 Vpr-binding prot 71.1 32 0.0007 35.5 9.2 160 107-276 591-776 (1516)
314 PF12231 Rif1_N: Rap1-interact 71.1 91 0.002 29.2 13.9 138 173-313 59-202 (372)
315 KOG2676 Uncharacterized conser 69.7 7 0.00015 35.5 4.1 63 138-200 376-440 (478)
316 KOG1791 Uncharacterized conser 69.4 36 0.00078 37.3 9.6 199 150-348 1429-1649(1758)
317 PF08216 CTNNBL: Catenin-beta- 69.1 6 0.00013 29.3 3.0 42 136-178 64-105 (108)
318 PF12726 SEN1_N: SEN1 N termin 69.0 75 0.0016 32.8 12.0 58 258-315 495-553 (727)
319 KOG1949 Uncharacterized conser 68.9 31 0.00068 34.6 8.5 145 208-357 180-330 (1005)
320 PF12074 DUF3554: Domain of un 68.1 99 0.0021 28.4 13.5 224 135-372 4-249 (339)
321 PF09758 FPL: Uncharacterised 67.2 54 0.0012 26.1 8.2 123 149-271 15-147 (149)
322 KOG4524 Uncharacterized conser 67.1 26 0.00057 36.3 7.9 95 243-339 802-900 (1014)
323 KOG1788 Uncharacterized conser 66.3 32 0.0007 36.3 8.3 258 82-358 475-761 (2799)
324 PF00790 VHS: VHS domain; Int 66.2 7.4 0.00016 30.6 3.3 74 74-147 42-118 (140)
325 KOG1992 Nuclear export recepto 65.9 1.7E+02 0.0037 30.3 15.5 150 161-315 499-668 (960)
326 PF11229 DUF3028: Protein of u 65.8 1.4E+02 0.0029 29.1 13.1 244 117-372 97-367 (589)
327 KOG2038 CAATT-binding transcri 65.4 63 0.0014 32.9 9.8 76 160-241 304-379 (988)
328 PF08713 DNA_alkylation: DNA a 65.3 10 0.00022 32.0 4.4 79 285-371 119-197 (213)
329 PF08767 CRM1_C: CRM1 C termin 64.9 1.1E+02 0.0024 27.9 15.0 181 175-357 42-243 (319)
330 KOG0891 DNA-dependent protein 64.9 77 0.0017 37.1 11.6 144 213-358 575-719 (2341)
331 PF13001 Ecm29: Proteasome sta 64.8 68 0.0015 31.4 10.3 173 171-358 248-443 (501)
332 PF04869 Uso1_p115_head: Uso1 64.2 1.1E+02 0.0025 27.7 11.9 117 256-372 109-252 (312)
333 PF00790 VHS: VHS domain; Int 64.2 20 0.00044 28.1 5.5 73 161-233 43-119 (140)
334 PF04821 TIMELESS: Timeless pr 64.1 1E+02 0.0023 27.2 11.3 60 300-359 134-209 (266)
335 KOG0301 Phospholipase A2-activ 63.4 1.6E+02 0.0036 29.5 12.1 139 88-234 558-706 (745)
336 PF08389 Xpo1: Exportin 1-like 63.4 32 0.0007 26.8 6.7 49 258-310 100-148 (148)
337 cd06561 AlkD_like A new struct 63.1 42 0.00091 27.8 7.6 75 289-370 108-182 (197)
338 PF08767 CRM1_C: CRM1 C termin 62.8 1.2E+02 0.0027 27.6 12.7 159 133-294 42-219 (319)
339 PF06743 FAST_1: FAST kinase-l 62.8 23 0.00049 24.1 4.8 66 222-288 3-68 (71)
340 KOG2549 Transcription initiati 61.5 1.5E+02 0.0033 28.9 11.4 125 163-298 210-351 (576)
341 PF04388 Hamartin: Hamartin pr 59.6 1.4E+02 0.003 30.5 11.6 68 288-357 72-139 (668)
342 KOG2038 CAATT-binding transcri 59.4 2.2E+02 0.0047 29.3 15.6 106 243-358 303-409 (988)
343 PF08389 Xpo1: Exportin 1-like 59.1 37 0.00081 26.4 6.3 49 88-142 100-148 (148)
344 PF12463 DUF3689: Protein of u 58.2 1.4E+02 0.0031 26.9 11.2 128 154-281 3-181 (303)
345 PF09324 DUF1981: Domain of un 57.8 23 0.00049 25.2 4.3 70 199-268 14-83 (86)
346 PF14631 FancD2: Fanconi anaem 55.3 2.2E+02 0.0048 32.0 12.9 148 117-273 431-587 (1426)
347 KOG1848 Uncharacterized conser 55.2 1.1E+02 0.0024 33.5 10.1 150 118-273 797-958 (1610)
348 PF03130 HEAT_PBS: PBS lyase H 54.9 19 0.0004 19.1 2.6 23 345-369 1-23 (27)
349 cd03567 VHS_GGA VHS domain fam 54.9 1E+02 0.0022 24.2 9.2 96 253-357 14-115 (139)
350 PF06012 DUF908: Domain of Unk 54.3 82 0.0018 28.9 8.4 66 133-199 237-307 (329)
351 KOG3132 m3G-cap-specific nucle 53.8 15 0.00033 31.4 3.1 44 10-53 24-67 (325)
352 PF13925 Katanin_con80: con80 53.1 84 0.0018 25.5 7.4 73 201-274 27-99 (164)
353 KOG1832 HIV-1 Vpr-binding prot 52.9 28 0.0006 35.9 5.3 70 131-201 675-784 (1516)
354 PF13001 Ecm29: Proteasome sta 52.9 1.6E+02 0.0034 28.9 10.5 148 116-274 271-444 (501)
355 cd00197 VHS_ENTH_ANTH VHS, ENT 52.9 65 0.0014 24.1 6.4 72 75-146 38-114 (115)
356 PF11791 Aconitase_B_N: Aconit 52.9 81 0.0018 25.1 6.8 44 303-358 80-123 (154)
357 cd03565 VHS_Tom1 VHS domain fa 52.8 72 0.0016 25.1 6.8 74 74-147 38-115 (141)
358 PF06012 DUF908: Domain of Unk 52.3 66 0.0014 29.5 7.5 73 263-336 241-324 (329)
359 PF01365 RYDR_ITPR: RIH domain 52.2 31 0.00068 29.1 5.0 116 113-234 39-171 (207)
360 PF03378 CAS_CSE1: CAS/CSE pro 51.7 2.3E+02 0.0049 27.2 13.1 112 76-189 28-146 (435)
361 PF12397 U3snoRNP10: U3 small 50.9 1.1E+02 0.0023 23.2 9.0 70 242-317 4-76 (121)
362 PF11791 Aconitase_B_N: Aconit 50.1 31 0.00068 27.3 4.2 97 76-188 24-122 (154)
363 KOG2213 Apoptosis inhibitor 5/ 50.1 1.7E+02 0.0037 27.4 9.3 54 174-233 38-91 (460)
364 KOG2199 Signal transducing ada 50.0 1.5E+02 0.0033 27.6 9.0 97 253-358 21-118 (462)
365 KOG2149 Uncharacterized conser 48.4 1.2E+02 0.0026 28.3 8.3 114 75-192 59-173 (393)
366 PF04499 SAPS: SIT4 phosphatas 48.1 1.1E+02 0.0023 29.8 8.4 79 110-188 55-147 (475)
367 KOG1993 Nuclear transport rece 47.9 3.4E+02 0.0074 28.1 16.2 125 243-368 739-874 (978)
368 PLN03205 ATR interacting prote 47.7 49 0.0011 30.8 5.6 116 243-358 322-446 (652)
369 KOG1087 Cytosolic sorting prot 47.7 91 0.002 30.1 7.7 95 251-354 12-108 (470)
370 PF12463 DUF3689: Protein of u 47.0 2.2E+02 0.0048 25.7 12.7 127 196-322 3-180 (303)
371 KOG4524 Uncharacterized conser 45.9 97 0.0021 32.4 7.8 93 75-170 804-899 (1014)
372 PF04499 SAPS: SIT4 phosphatas 45.3 1.3E+02 0.0028 29.2 8.5 82 152-233 54-149 (475)
373 KOG2149 Uncharacterized conser 44.1 1.8E+02 0.0039 27.2 8.7 131 204-338 60-192 (393)
374 COG5110 RPN1 26S proteasome re 43.8 3.3E+02 0.0072 26.9 15.7 65 289-361 644-708 (881)
375 cd01882 BMS1 Bms1. Bms1 is an 43.7 9.2 0.0002 32.8 0.5 23 28-50 11-33 (225)
376 PF09324 DUF1981: Domain of un 43.3 65 0.0014 22.8 4.7 67 114-185 14-84 (86)
377 KOG1992 Nuclear export recepto 43.3 4.1E+02 0.0088 27.7 18.4 36 70-105 494-529 (960)
378 PF09758 FPL: Uncharacterised 42.2 1E+02 0.0023 24.5 6.1 123 191-313 15-147 (149)
379 PF01365 RYDR_ITPR: RIH domain 42.1 33 0.00071 29.0 3.6 118 195-316 36-170 (207)
380 PF07539 DRIM: Down-regulated 39.7 1.9E+02 0.004 22.8 10.7 82 160-254 17-98 (141)
381 KOG0803 Predicted E3 ubiquitin 39.3 5.9E+02 0.013 28.4 17.5 254 75-338 42-330 (1312)
382 PF14764 SPG48: AP-5 complex s 39.2 3.6E+02 0.0079 26.0 11.1 108 217-324 282-405 (459)
383 cd03572 ENTH_epsin_related ENT 38.8 1.8E+02 0.0039 22.3 10.5 93 261-358 18-119 (122)
384 KOG1848 Uncharacterized conser 38.6 3.3E+02 0.0072 30.1 10.5 96 132-232 856-961 (1610)
385 COG5537 IRR1 Cohesin [Cell div 38.5 4.2E+02 0.0091 26.5 11.4 97 172-272 287-385 (740)
386 PF14663 RasGEF_N_2: Rapamycin 38.2 55 0.0012 24.7 3.9 38 161-199 9-46 (115)
387 KOG2021 Nuclear mRNA export fa 37.3 4.1E+02 0.0089 27.4 10.4 56 87-148 206-261 (980)
388 PF15178 TOM_sub5: Mitochondri 36.1 62 0.0013 19.7 3.0 10 19-28 10-19 (51)
389 KOG2199 Signal transducing ada 36.1 1.2E+02 0.0027 28.2 6.3 73 160-232 45-118 (462)
390 COG2914 Uncharacterized protei 35.7 23 0.0005 25.5 1.4 29 10-38 68-97 (99)
391 PF07923 N1221: N1221-like pro 35.3 95 0.0021 27.9 5.6 36 114-150 57-92 (293)
392 KOG2152 Sister chromatid cohes 34.5 3.8E+02 0.0083 27.5 9.7 43 190-232 363-405 (865)
393 KOG1087 Cytosolic sorting prot 33.8 90 0.002 30.1 5.4 71 74-144 38-109 (470)
394 PLN03076 ARF guanine nucleotid 33.8 7.4E+02 0.016 28.8 12.9 106 118-233 409-517 (1780)
395 PF08713 DNA_alkylation: DNA a 33.6 2.8E+02 0.0061 23.1 12.2 141 120-285 54-196 (213)
396 KOG2213 Apoptosis inhibitor 5/ 33.4 4.2E+02 0.009 25.0 13.7 204 75-295 62-288 (460)
397 cd03572 ENTH_epsin_related ENT 33.3 2.2E+02 0.0048 21.8 7.8 61 304-370 19-80 (122)
398 cd03565 VHS_Tom1 VHS domain fa 33.0 2.4E+02 0.0052 22.1 7.2 73 161-233 39-116 (141)
399 PF14663 RasGEF_N_2: Rapamycin 33.0 1.4E+02 0.003 22.5 5.4 39 118-158 9-47 (115)
400 KOG0392 SNF2 family DNA-depend 32.8 1.6E+02 0.0034 32.2 7.1 109 161-273 817-925 (1549)
401 PF12765 Cohesin_HEAT: HEAT re 32.8 34 0.00074 20.4 1.6 40 267-309 2-41 (42)
402 PF07923 N1221: N1221-like pro 32.6 86 0.0019 28.2 4.9 56 284-339 58-127 (293)
403 cd07064 AlkD_like_1 A new stru 32.1 2.3E+02 0.0049 24.0 7.1 76 288-371 117-192 (208)
404 PF12783 Sec7_N: Guanine nucle 32.1 2.7E+02 0.0058 22.4 9.4 91 281-372 68-160 (168)
405 PF12397 U3snoRNP10: U3 small 30.7 2.3E+02 0.0051 21.3 10.0 70 203-275 7-76 (121)
406 KOG2085 Serine/threonine prote 29.1 3.7E+02 0.008 25.4 8.1 48 150-197 167-214 (457)
407 PF10257 RAI16-like: Retinoic 28.3 4.9E+02 0.011 24.2 10.9 142 152-295 1-181 (353)
408 COG5095 TAF6 Transcription ini 28.0 4.6E+02 0.0099 23.7 8.5 130 132-272 212-358 (450)
409 KOG1980 Uncharacterized conser 27.7 63 0.0014 32.0 3.2 25 27-51 50-74 (754)
410 KOG2085 Serine/threonine prote 27.5 5.4E+02 0.012 24.4 11.9 59 110-170 170-228 (457)
411 PF12054 DUF3535: Domain of un 27.0 5.8E+02 0.012 24.6 11.8 79 88-171 101-179 (441)
412 KOG4231 Intracellular membrane 26.5 38 0.00082 32.6 1.5 71 244-314 328-398 (763)
413 PF13925 Katanin_con80: con80 26.3 3.5E+02 0.0076 21.8 8.4 69 118-188 29-97 (164)
414 PF06298 PsbY: Photosystem II 25.5 56 0.0012 18.8 1.5 24 345-368 12-35 (36)
415 PF01465 GRIP: GRIP domain; I 25.3 1.7E+02 0.0037 17.9 4.0 34 290-323 11-44 (46)
416 PF14868 DUF4487: Domain of un 25.2 4.6E+02 0.0099 26.2 8.6 59 217-275 494-554 (559)
417 KOG1525 Sister chromatid cohes 25.1 9.9E+02 0.022 26.7 19.3 115 242-358 257-405 (1266)
418 KOG4337 Microsomal triglycerid 24.3 7.6E+02 0.017 25.1 21.7 106 204-322 495-601 (896)
419 COG5095 TAF6 Transcription ini 23.9 4.8E+02 0.01 23.6 7.6 100 169-278 207-321 (450)
420 KOG4231 Intracellular membrane 23.8 1.2E+02 0.0027 29.3 4.3 70 288-358 330-399 (763)
421 KOG2022 Nuclear transport rece 22.9 9.2E+02 0.02 25.5 15.2 149 113-274 454-620 (982)
422 cd03562 CID CID (CTD-Interacti 22.5 3.3E+02 0.0071 20.1 6.9 51 215-274 17-67 (114)
423 PF12331 DUF3636: Protein of u 22.4 1.5E+02 0.0033 23.5 4.0 57 115-171 78-147 (149)
424 PF08620 RPAP1_C: RPAP1-like, 22.3 2E+02 0.0042 19.8 4.0 29 75-103 40-68 (73)
425 PF14631 FancD2: Fanconi anaem 22.1 3.3E+02 0.0072 30.7 7.7 112 243-358 472-587 (1426)
426 PF13606 Ank_3: Ankyrin repeat 20.7 83 0.0018 17.0 1.6 14 359-372 13-26 (30)
427 PF11502 BCL9: B-cell lymphoma 20.4 1.6E+02 0.0036 17.4 2.8 18 23-40 4-21 (40)
428 KOG1791 Uncharacterized conser 20.3 1.3E+03 0.028 26.3 11.5 200 112-313 1434-1658(1758)
429 PRK13240 pbsY photosystem II p 20.1 96 0.0021 18.4 1.8 25 345-369 12-36 (40)
430 COG3114 CcmD Heme exporter pro 20.0 2E+02 0.0044 19.1 3.4 27 23-49 36-62 (67)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.6e-74 Score=486.57 Aligned_cols=369 Identities=56% Similarity=0.882 Sum_probs=337.4
Q ss_pred CchhHHhccCCC-C-CCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCC-cccccchhhhhHHh-hhcCHHHHHHH
Q 016714 7 TRAEVRKKGYKT-G-VDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQP-QQQGLDASQNAIEK-KLESIPSMVQG 82 (384)
Q Consensus 7 ~~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~~lv~~ 82 (384)
+.++.|+..||+ | +.++|+||+|+++++||||+||+|.+.||||.....+. .++ +-..++ .-..+|.+.+.
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss-----~i~meqq~~~elp~lt~~ 79 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS-----FIPMEQQFYSELPQLTQQ 79 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc-----cCchhHHhhhhhHHHHHH
Confidence 678889999998 4 77999999999999999999999999999998322221 111 111111 12367999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 016714 83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAV 162 (384)
Q Consensus 83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i 162 (384)
|.|+|.+.|+.|+..+|+++|.+..|+++.++++|++|.+++++......-++++|+|+|+|+++++..+++.+++.|++
T Consensus 80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 99999999999999999999999999999999999999999999544336889999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhhhhcCC-CCCChh
Q 016714 163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGK-PPTPFE 240 (384)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~ 240 (384)
|.++.+|.+++.+++++++|+|||+++|++.+|+.++++|++++++.++.++. +..+.+++.|+|+|||+++ |.+...
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~ 239 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS 239 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999996443 6789999999999999998 888888
Q ss_pred hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
.+...+|.|.+++.+.|+++..+|||+|+||++++.+.++.+++.|+.++|+++|.+++..++.+|++.+|||++|++.+
T Consensus 240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
++.++++|+++.+..+|+++ +..+||+|||+++||++|+.+|+++++++++ +|...+|++
T Consensus 320 TqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred eehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 99999999999999999999 8899999999999999999999999999999 566666654
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-70 Score=499.15 Aligned_cols=368 Identities=63% Similarity=0.998 Sum_probs=336.8
Q ss_pred hhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHHHHhcCCC
Q 016714 9 AEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSED 87 (384)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~~ 87 (384)
...|.++||+ +++++|+||||++..||+||+||+|.|+|||+..+....... ...........+.++..+.|++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~S~~ 79 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDEL-----LSDSQSQASNLELMLAALYSDD 79 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccc-----cchhHHHhhhhHHHHHHHhCCC
Confidence 4567777887 799999999999999999999999999999993222221111 0111111223688999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 016714 88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ 167 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~ 167 (384)
++.+..+...++++++.+++|+++.++..|++|.|+++|...+++.++++|+|+|+|||++++++++.+++.|++|.|+.
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 99999999999999999989999999999999999999987666999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChhhhhchH
Q 016714 168 LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPAL 246 (384)
Q Consensus 168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~ 246 (384)
++.+++..++++|+|+|||++++++.+|+.++.+|++++|+.++.......+.++++|+|+|||+++ |.+.+..+..++
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965556689999999999999999 889999999999
Q ss_pred HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 016714 247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID 326 (384)
Q Consensus 247 ~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~ 326 (384)
|.|..++++.|++++.+|||+++||++++++.++.+++.|+++.|+++|.+.++.++.+|++++|||++|++.+++.+++
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714 327 NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 327 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
+|+++.|..++...+.+.++++|||+++||++|+++|+++++++|+ +|+++||++
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 9999999999995547789999999999999999999999999999 689999875
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-45 Score=333.67 Aligned_cols=295 Identities=28% Similarity=0.449 Sum_probs=269.1
Q ss_pred cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.+|.++..|.. .++.+|++|+|+|.++++++ .+..+.++++|.+|.|+.+|.+++ .++++.|.|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999974 55999999999999999987 888889999999999999999999 999999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
++.+++.|++++|+.++...+. .+..++.|+|.|+|.+....-..-.-..+++.|..++ ++.|++++..++|++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988665 7899999999999976521222222334788888888 8999999999999999999
Q ss_pred cCCCCCChhh-hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHH
Q 016714 232 RGKPPTPFEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRT 309 (384)
Q Consensus 232 ~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~ 309 (384)
.+.+...... ..|++|.|+.+|.+.++.++..|+++++|++.+++.+++.+++.|+++.|..+|. ++...++..|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 9864444333 3899999999999999999999999999999999999999999999999999998 6677799999999
Q ss_pred HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc
Q 016714 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL 372 (384)
Q Consensus 310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~ 372 (384)
|+||+.|+.++++.+++.|++|.|+.+|+++ +.++||||+|+++|+++ |+++|+.+|++.|+
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~gi 408 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGI 408 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999 89999999999999998 89999999999999
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.7e-44 Score=304.61 Aligned_cols=305 Identities=26% Similarity=0.360 Sum_probs=269.3
Q ss_pred hcCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 73 LESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 73 ~~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+.+|++++.+. ....-.+++|+|+|.++.|+. ....+.++++|.+|.++++|.+++ .++++.+.|+|+|++.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 367999999995 455678999999999999987 777778899999999999999998 89999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGS--DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
+++.+++.|++.+++.++.+.. ..+...+.|+|+|+|.+...--+.-.-...++.|.+++ +..|+++...|+|++++
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence 9999999999999999998754 48899999999999964321112212223688888888 88899999999999999
Q ss_pred hhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHH
Q 016714 230 FCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR 308 (384)
Q Consensus 230 L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~ 308 (384)
|+.+..+.....+ .++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+-.+|.++...++..|||
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 9999644444444 777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHhCCc------cccCCCc
Q 016714 309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA---GNRAQIQVHDSFHL------FVLHEDF 379 (384)
Q Consensus 309 ~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~i~~l~~~~~------ll~~~~~ 379 (384)
+++||++|+.++++.+++.+++|.|+++|.+. +..++|+|||+++|.+. +.|+++.++++.|+ +|.-.|.
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 99999999999999999999999999999999 99999999999999997 48999999999999 4555555
Q ss_pred cc
Q 016714 380 SL 381 (384)
Q Consensus 380 ~~ 381 (384)
+|
T Consensus 429 ki 430 (526)
T COG5064 429 KI 430 (526)
T ss_pred cc
Confidence 54
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=297.31 Aligned_cols=305 Identities=21% Similarity=0.220 Sum_probs=257.1
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+.+|.++..|.++++..|..|++.+.++++.. .+++..+++.|+||.|+++|.+++++.+|++|+|+|+||+++++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 478999999999999999999999998887654 5688899999999999999987554799999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhcCCC---------HHHHHHHHHHHHhhhCCCCc-----------hhhHH---HhcCChHHHHH
Q 016714 153 TRVVIEHGAVPMFVQLLSSGS---------DDVREQAVWALGNVAGDSPS-----------CRDLV---LSSGALMPLLA 209 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~i---~~~g~i~~L~~ 209 (384)
+..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .++.. ...|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998644 45699999999999987543 22221 34577777877
Q ss_pred HhcccchhHHH----HHHHHHHhhhhcCC-CCCChhhh-------------------hchHHHHHHhhccCCHhHHHHHH
Q 016714 210 QLNEHSKLSML----RNATWTLSNFCRGK-PPTPFEQV-------------------KPALPILQRLIHLNDEEVLTDAC 265 (384)
Q Consensus 210 ~l~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~~~-------------------~~~~~~L~~lL~~~~~~i~~~a~ 265 (384)
.+ +.++.... ..++|+|.+|++++ |...+..+ .++++.|+.+|...+.+++.+++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 77 34333332 36789999999987 33322211 34567788889989999999999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhH
Q 016714 266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSI 345 (384)
Q Consensus 266 ~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v 345 (384)
|+|++++.++.+..+.+.+.|+++.|+++|.+++..++.+|+++++|++.++++++..++++|++|.|+++|.++ ++.+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-hCCc------cccCCCccc
Q 016714 346 KKEACWTISNITAGNRAQIQVHD-SFHL------FVLHEDFSL 381 (384)
Q Consensus 346 ~~~a~~~L~nl~~~~~~~i~~l~-~~~~------ll~~~~~~~ 381 (384)
+++|+|+|+|++.+ .++++.++ ++|+ +|+++++++
T Consensus 505 qeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~ 546 (2102)
T PLN03200 505 KEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKG 546 (2102)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 99999999999995 45566666 7787 577776543
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.9e-32 Score=279.81 Aligned_cols=288 Identities=17% Similarity=0.144 Sum_probs=259.4
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+.++.|+.++...+.+.|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ +.+|..|+|+|+|++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 67889999999999999999999999997765 778889999999999999999988 8999999999999999989999
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+++.|++|.|+.+|.+++..+++.|+|+|+|++.+++.++..+...|++++|+++| .+.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 666889999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH---HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND---KIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~---~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
... ..++.++.+|.++++.++..++.+++++....+. ..+.....|+++.|+++|.++++.+++.|+++|
T Consensus 561 ~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 561 ADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred cch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 421 2447788999999999999999999888653322 222334579999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCc
Q 016714 311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSFHL 372 (384)
Q Consensus 311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~~~ 372 (384)
+|++++.+++.+.++..|+++.++.+|.++ +.+++++|+|+|+|++. ++.+++.++++.|+
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga 695 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSIKENRKVSYAAEDA 695 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999 89999999999999997 68888889999998
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-26 Score=197.75 Aligned_cols=280 Identities=21% Similarity=0.322 Sum_probs=249.3
Q ss_pred hhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 72 KLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 72 ~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
..+++..+.++-++.+..+|..++.+|.++... .++++.++.+|++|.|++++++++ +++|+.++.+++||+-+ ..
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~ 240 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR 240 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence 347888899988889999999999999999764 688999999999999999999999 99999999999999985 78
Q ss_pred hHHHHHhcC--ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 152 HTRVVIEHG--AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 152 ~~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
.++.+.+.+ .+|.|+.++.+++++++.+|..+|+|++.+.. ++..+.+.|.+|.++++| +++.....-....++.|
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence 888999988 99999999999999999999999999999887 566778999999999999 66655666677788999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHH
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALR 308 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~ 308 (384)
++-+.-+.......|++..|+.+|...| ++++..|...|++|+...+.....+.++|.++.+..++.+....++...-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 9998655555556899999999998776 559999999999999988888889999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 309 TVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 309 ~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
+++.++. ++.....+.+.|++|.|+.++.+. +.+++-+|+-+|.|++..
T Consensus 399 c~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 399 CIAQLAL-NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHh-ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence 9999887 445556789999999999999998 899999999999999983
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=186.98 Aligned_cols=278 Identities=23% Similarity=0.301 Sum_probs=241.8
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcC--CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG--VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g--~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
+++|.+++.++++|+.+|+.++.++.++.-. ...++.+.+.+ ++|.|++++++++ +.++..|.-+|+|++++ .+
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd--~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasd-t~ 283 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--RRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASD-TE 283 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhh--HHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhccc-ch
Confidence 7899999999999999999999999998753 56677788887 9999999999999 89999999999999996 66
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
....+++.|.+|.++.+|+++.....-..+.|+.||+.+.- +.-.+.+.|++.||+++|....+++++-++..+|.||+
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 67778899999999999999888888889999999997654 45678899999999999977778889999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 232 RGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
... .+.....-.+.+|.+..++....-+++.....|++.|+..+..+ ..+.+.|+++.|++++.+.+.+++-.|+.+|
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeecccCccchhhcccHHHHH
Confidence 865 33334444899999999999999999999999999998776554 5789999999999999999999999999999
Q ss_pred HHhhcCChHHHHHH--HH---cCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 311 GNIVTGDDAQTQFV--ID---NGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 311 ~nl~~~~~~~~~~i--~~---~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+|++...+.....+ ++ .|+-..|..++.+. +..++.-+.|++..+..
T Consensus 442 ~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~-~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 442 INLSSDVEHYARVIEAWDHPVQGIQGRLARFLASH-ELTFRHIARWTIQQLLE 493 (550)
T ss_pred HhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Confidence 99998655554422 22 36777899999998 88999999999999987
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=1.1e-18 Score=169.28 Aligned_cols=291 Identities=20% Similarity=0.245 Sum_probs=231.8
Q ss_pred hcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 73 LESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 73 ~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
-+.++.|++.|.+++.++...++..|.++.-. .++...+.+.|+++.|+.++.+++ .+++..++++|.|++.+ ++.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~ 364 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PEL 364 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHH
Confidence 36899999999999999999999999998554 678899999999999999999988 89999999999999995 888
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
+..+++.|++|.|+.+|.++ ..+..|+.+|++++.+.+ .|..+...++++.+++++...++..+...+++++.||+.
T Consensus 365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 99999999999999999864 466779999999998775 788999999999999988666665555555666666555
Q ss_pred CCCCC-------------------------------------ChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccC
Q 016714 233 GKPPT-------------------------------------PFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 233 ~~~~~-------------------------------------~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~ 274 (384)
..... ......+.+..|+..+.. ++++...+++++|+||...
T Consensus 442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 442 NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 43211 111112333333444433 4678999999999999987
Q ss_pred ChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHH
Q 016714 275 PNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACW 351 (384)
Q Consensus 275 ~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~ 351 (384)
+.+....+.+.+++|.|..+|..+ .+++...++..+|.++. ++.....+.+.|+++.|+.+|.... +.++.-..++
T Consensus 522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHH
Confidence 666666666789999999999654 45788899999999986 6667777889999999999998653 6788999999
Q ss_pred HHHHHhcCCHHHHHHHHh-CCc
Q 016714 352 TISNITAGNRAQIQVHDS-FHL 372 (384)
Q Consensus 352 ~L~nl~~~~~~~i~~l~~-~~~ 372 (384)
++..+....+ -.+.++. .++
T Consensus 601 ~f~~ll~h~~-tr~~ll~~~~~ 621 (708)
T PF05804_consen 601 VFYQLLFHEE-TREVLLKETEI 621 (708)
T ss_pred HHHHHHcChH-HHHHHHhccch
Confidence 9999998644 3455543 444
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=4.2e-17 Score=158.45 Aligned_cols=285 Identities=19% Similarity=0.188 Sum_probs=222.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
+++-..+... ..+...+...|.+++.. ......+.+.|+++.|+++|++++ .++...++++|.+++.. .+++..+
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEM 327 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 3344444443 34555677888888653 455566889999999999999988 89999999999999985 7899999
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
.+.|+++.|++++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.+|.+ +.....++.+|.++|..+..
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999998876 78999999999999999943 34556688999999998654
Q ss_pred CChhhhhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh---------------------
Q 016714 237 TPFEQVKPALPILQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL--------------------- 294 (384)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l--------------------- 294 (384)
.......+++|.+++++. ++++.+..++++.+.||+.... ..+.+.+.|+++.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG 482 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 444445789999988764 4566677777888888876543 34555555555555433
Q ss_pred ----------------cCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHHHHHHH
Q 016714 295 ----------------LMH-PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNI 356 (384)
Q Consensus 295 ----------------L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl 356 (384)
+.. .+++....++.+|+|+...+..-...+.+.+++|.|..+|..+. .+++.-+++..++.+
T Consensus 483 ~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 483 PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 222 34567788999999998766556666667899999999998652 557999999999988
Q ss_pred hcCCHHHHHHHHhCCc
Q 016714 357 TAGNRAQIQVHDSFHL 372 (384)
Q Consensus 357 ~~~~~~~i~~l~~~~~ 372 (384)
+. .+.....+.++|+
T Consensus 563 a~-d~~~A~lL~~sgl 577 (708)
T PF05804_consen 563 AS-DPECAPLLAKSGL 577 (708)
T ss_pred HC-CHHHHHHHHhCCh
Confidence 86 6676777788898
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.4e-15 Score=130.81 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=229.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChH
Q 016714 85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVP 163 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~ 163 (384)
+.+.....+++.++..+..+. ..+.+..++..++.+|.. .++.++-.....++..-|..+..+++.+++.++.+
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 456667777787777665432 356777889999999964 23378888888999998888899999999999999
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHhhhCCCC---------chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 164 MFVQLLSS-GSDDVREQAVWALGNVAGDSP---------SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 164 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.+...|.. +...+...+.|++.-+..++. .....+...|++..|++.+.-..+++++..++.+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99976654 555788899999999876543 23456778888999999997777899999999999999987
Q ss_pred CCCCChhhhhchHHHHHHhhccCC-H---hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC--CCChhhHHHHH
Q 016714 234 KPPTPFEQVKPALPILQRLIHLND-E---EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM--HPSATVLIPAL 307 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~-~---~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~--~~~~~v~~~a~ 307 (384)
+.........|++..++.++.+.+ . +....++..|..|+-. +.....+++.|+.+.++.++. +.+|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 554444555899999999997743 3 3556778888888654 456678999999999999983 46788999999
Q ss_pred HHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 308 RTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 308 ~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
.+++-++-..+++...+++.|+-...++.+... ....++++|||.+.||+..+.++...++..|+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi 417 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI 417 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH
Confidence 999999999999999999999999999888754 35679999999999999999999999999998
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.3e-16 Score=147.93 Aligned_cols=261 Identities=23% Similarity=0.362 Sum_probs=228.5
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 76 IPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 76 l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
+..|+..|+.. |+..|++|+..+..+++..+.+....+--.-++|.|+.+|++..+.++...|+++|++++.--|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 57778888766 89999999999999988765555555545568999999999988899999999999999999999999
Q ss_pred HHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 155 VVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.+++.++||.|+.-|.. +-.++.++++.+|-.|+...+ ..+++.|++...+.+| +--...+++.|+.+.+|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999986654 778999999999999998876 4678999999999888 666788999999999999998
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCCC----ChhhHHHH
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMHP----SATVLIPA 306 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~~----~~~v~~~a 306 (384)
-+...+..+...+|.|..+|++.|....+.+|-|+.+++++ .++..+.+..+|++....++|.-. +..+..-.
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 88888888999999999999999999999999999999875 567888899999999999999654 34566778
Q ss_pred HHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 307 ~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
++.+.-++++++-....+...++...|..+|...
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 8999999999998888889999999999999865
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=8.2e-15 Score=139.64 Aligned_cols=280 Identities=24% Similarity=0.291 Sum_probs=219.2
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch--
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE-- 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~-- 151 (384)
..+|+.+.+|.+.++.+|-.|+..+..++.++ +.-...+.+.|+|+.||.+|.+.+ .+++..|+|+|.|+..++..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence 46899999999999999999999998775543 555666778999999999999999 99999999999999998776
Q ss_pred hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHH-------------------------------
Q 016714 152 HTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVL------------------------------- 199 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~------------------------------- 199 (384)
++-.+.+.++++.++.+|+. .|.++++....+|+||+..+. ++..++
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 88899999999999999986 788899988888888876522 222211
Q ss_pred -------------------------hcCChHHHHHHhc------------------------------------------
Q 016714 200 -------------------------SSGALMPLLAQLN------------------------------------------ 212 (384)
Q Consensus 200 -------------------------~~g~i~~L~~~l~------------------------------------------ 212 (384)
..|.|+.|+..+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 2344555554441
Q ss_pred -----------------------------------------------------------ccchhHHHHHHHHHHhhhhcC
Q 016714 213 -----------------------------------------------------------EHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 213 -----------------------------------------------------------~~~~~~~~~~a~~~L~~L~~~ 233 (384)
...+..+++.++.+|-||+.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 001112345566666666665
Q ss_pred CCCCCh----h--hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC------Chh
Q 016714 234 KPPTPF----E--QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP------SAT 301 (384)
Q Consensus 234 ~~~~~~----~--~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~------~~~ 301 (384)
...... . ....++|.|+++|+.+|..+...++.+|.||+.+...+ .++..++++.|+..|-.. +.+
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk--~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK--ELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh--hhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 421111 1 12567899999999999999999999999999875433 456688999999999543 357
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 302 VLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 302 v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+...+|.+|.|++..+......+.+.+.++.|+-+..+..+++..+.|+..+..|=.
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 888999999999998999989999999999999999987677899999888887764
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=1.5e-15 Score=150.99 Aligned_cols=268 Identities=21% Similarity=0.199 Sum_probs=224.6
Q ss_pred HHH-HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------C---ChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 90 LQL-EATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH--------D---MPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 90 ~~~-~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~--------~---~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
-++ .|+..|-++ +++ ++++..+-+.|++..+-+||.-+ + +..++.+|+.+|+||+.|+..++..+.
T Consensus 313 H~lcaA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 666777776 665 78899999999999998887621 1 247899999999999999888887776
Q ss_pred h-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 158 E-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
. -|++..++..|.+..+++.+..+.+|.||+-. +...+..+-+.|.+..|..+-.....+..+..++.+|+||+.+..
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 5 68999999999999999999999999999842 334677888889999999888677777888999999999998873
Q ss_pred -C-CChhhhhchHHHHHHhhccC----CHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCCCChhhHHHH
Q 016714 236 -P-TPFEQVKPALPILQRLIHLN----DEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMHPSATVLIPA 306 (384)
Q Consensus 236 -~-~~~~~~~~~~~~L~~lL~~~----~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a 306 (384)
+ ..+-.+.|++.+|+.+|... .-.|++.+-.+|.|.+.+ .+...+.+.++.++..|++.|++.+-.+...+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 3 33445689999999999754 345777777777776643 56677788999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 016714 307 LRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360 (384)
Q Consensus 307 ~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 360 (384)
|.+|.||...+++..+.+++.|+++.|..++.+. ...+..-++-+|.|+....
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998 8899999999999999744
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.68 E-value=1e-14 Score=126.21 Aligned_cols=197 Identities=19% Similarity=0.224 Sum_probs=164.2
Q ss_pred HHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714 113 VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 113 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 192 (384)
+++.+-++.|+.+|+...+|.++..+..+++|.+. .+..++.+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 35667789999999976669999999999999877 58999999999999999999999999999999999999998776
Q ss_pred chhhHHHhcCChHHHHHHhccc-chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714 193 SCRDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL 271 (384)
Q Consensus 193 ~~~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l 271 (384)
.+..+-. .++.+++.+... .+..++..++.+|.||+... .....+...+|.++.+|.+++..++..++++|.+|
T Consensus 87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4454432 466666655343 47789999999999998763 22344567899999999999999999999999999
Q ss_pred ccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHHHHHhhcC
Q 016714 272 SDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRTVGNIVTG 316 (384)
Q Consensus 272 ~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~ 316 (384)
+..+.. ...++.++++..++.++... +.++...++..+.||..+
T Consensus 162 S~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 987654 45678889999999999765 678899999999999643
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=8.8e-15 Score=145.56 Aligned_cols=300 Identities=18% Similarity=0.170 Sum_probs=226.5
Q ss_pred HhhhcCHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCHHHHHH-------hhcCC------CC
Q 016714 70 EKKLESIPSMVQGVWSED---PALQLEATTQFRKLLSIERSPP--IDEVIKAGVVPRFVE-------FLGRH------DM 131 (384)
Q Consensus 70 ~~~~~~l~~lv~~l~s~~---~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~Lv~-------lL~~~------~~ 131 (384)
....+.|+-+++.++..+ .+.+..|-.+|.+++..+.+.. ++.+--..++..+.. +|... ..
T Consensus 231 mR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 231 MRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 355688999999998544 5677788889999987652222 122221122222222 22211 11
Q ss_pred hHHHH-HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC------------CCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714 132 PQLQF-EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS------------GSDDVREQAVWALGNVAGDSPSCRDLV 198 (384)
Q Consensus 132 ~~~~~-~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~~i 198 (384)
..-+. .|+..|..++.+ .+.+..+-+.|++..+-.|+.- .+..++..+..+|.||..++..++..+
T Consensus 311 ~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 34455 677778888885 9999999999999998887752 245799999999999997766665554
Q ss_pred -HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh--hchHHHHHHh-hccCCHhHHHHHHHHHHHhccC
Q 016714 199 -LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV--KPALPILQRL-IHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 199 -~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~l-L~~~~~~i~~~a~~~l~~l~~~ 274 (384)
...|++..++..| .....++..-.+.+|.||+..........+ .+-+-.|... ++...+..+..++.+||||+.+
T Consensus 390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 4568899999999 555667888889999999987533333333 4555555544 5666778899999999999999
Q ss_pred ChHHHHHHHHc-CChHHHHHhcCCC----ChhhHHHHHHHHHHhh---cCChHHHHHHHHcCchHHHHHHhccCCchhHH
Q 016714 275 PNDKIQAVIEA-GVCPRLVELLMHP----SATVLIPALRTVGNIV---TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIK 346 (384)
Q Consensus 275 ~~~~~~~~~~~-g~~~~L~~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~ 346 (384)
+.++...|... |.+..|+..|.+. .-.|.+.+-.+|.|+. +.++.+.+.+.++++|..|++.|.+. ...+.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence 88877777764 9999999999765 3467788888888875 44677888899999999999999999 89999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 347 KEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 347 ~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
.++|.+|.||.+.+++..++|++.|.
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gA 573 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGA 573 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhccc
Confidence 99999999999999999999999998
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.4e-13 Score=118.57 Aligned_cols=281 Identities=16% Similarity=0.174 Sum_probs=222.2
Q ss_pred cCHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-
Q 016714 74 ESIPSMVQGVW--SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS- 150 (384)
Q Consensus 74 ~~l~~lv~~l~--s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~- 150 (384)
.++..++..|. .++.++-..+++.+++-+-.. +-+.+.+.+.++++.+...|.......+..++.|++.-+..+++
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 45666677665 456777777888888776654 67788899999999999877665535789999999999887532
Q ss_pred --------hhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh---H
Q 016714 151 --------EHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL---S 218 (384)
Q Consensus 151 --------~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~---~ 218 (384)
.....+...|++..|+..+.. -++.+...++.+|+.|+..++ +...+.+.|++..|++++.++.+. +
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~ 302 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRT 302 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence 344567788889999998875 457888889999999998877 446678999999999999654433 4
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh--ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC
Q 016714 219 MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI--HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM 296 (384)
Q Consensus 219 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~ 296 (384)
+.+.++.+|+.|+..+..+......++.|.++.++ +++||.+...++.+++.|+-..++....+++.|+-...++.++
T Consensus 303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence 66788999999998876666666699999988876 5678999999999999999999988889999999999999996
Q ss_pred CC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 297 HP--SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 297 ~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.. ...++..||+.|.|++..+.++...+++.|+ +.|+..-... .+..+..|--+|..+..
T Consensus 383 ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~-h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKAN-HETCEAAAKAALRDLGC 444 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence 43 3578899999999999988888887777654 5555555555 56677777777776654
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.62 E-value=1.3e-14 Score=112.51 Aligned_cols=119 Identities=38% Similarity=0.625 Sum_probs=110.7
Q ss_pred HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC
Q 016714 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (384)
.+++.|+++.++++|.+++ +.++..++++|++++.++++....+++.|+++.++.+|.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999888 899999999999999998999999999999999999999999999999999999999988
Q ss_pred CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
+..+..+.+.|+++.+++.+ ...+..+++.++|+|.+||.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77888888899999999999 66688999999999999974
No 19
>PRK09687 putative lyase; Provisional
Probab=99.60 E-value=4.3e-13 Score=118.70 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=161.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.|...|.+.+..++..|++.|..+-. ..+++.+..++.+++ +.++..++|+|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56888888889999999999999886622 125777888888887 89999999999988652111
Q ss_pred HHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 155 VVIEHGAVPMFVQL-LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 155 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
...+++.|..+ +.++++.|+..|+.+||+++...... ....+..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 12356777766 66788889999999999986433211 111344455555 56678888888888865542
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
...++.|+.+|.++++.++..|+.+|+.+...++ .+++.|+..|.+.+..|+..|++.||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 2477888888888888999999999998833332 2356788888888888999999999886
Q ss_pred hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
-. + .+++.|+..+.++ + ++..|+.+|+++..
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD 250 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC
Confidence 32 2 3566777777765 3 56677777777764
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.60 E-value=9e-13 Score=126.72 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=219.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
+.+...+++.+.+....++..|.+++... ....+ ..+..+.|...|.+++ +.++..+++.|++++.++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~---~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL---SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc---CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34777888888877788888899888642 22222 5677899999999998 9999999999999999888888888
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999999999999999877654 5567777888888888 454566777899999999987644
Q ss_pred CChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC--h---hhHHH-HHHH
Q 016714 237 TPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS--A---TVLIP-ALRT 309 (384)
Q Consensus 237 ~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~--~---~v~~~-a~~~ 309 (384)
...... .|+++.++..|.++|.-++..++.++..|+. .+...+.+.+.|+++.|..++.+.+ + .+..+ .+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 333333 7899999999999999999999999999999 5556778899999999999996532 2 22333 4488
Q ss_pred HHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
.|+++...+...-... ..++..+..++.+. ++..+..|.-+++.|+. +.+-.+.+
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L 327 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLL 327 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHH
Confidence 8898875443332111 24566777778887 88888888889999986 44444444
No 21
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.60 E-value=3.8e-16 Score=114.23 Aligned_cols=91 Identities=45% Similarity=0.671 Sum_probs=60.2
Q ss_pred CCchhHHhccCCC-CCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCccccc-chhhhh-HHhhhcCHHHHHHH
Q 016714 6 STRAEVRKKGYKT-GVDADEARRRREDNLVEIRKNKREDNLLKKRREGLLLQPQQQGL-DASQNA-IEKKLESIPSMVQG 82 (384)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~lv~~ 82 (384)
++..+.|++.||+ |++++|+|+||+++.|+|||+||+|.|.|||+.........+.. +..... .......+|.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 3566789999999 79999999999999999999999999999999865443322110 011101 11222467899999
Q ss_pred hcCCCHHHHHHHHH
Q 016714 83 VWSEDPALQLEATT 96 (384)
Q Consensus 83 l~s~~~~~~~~a~~ 96 (384)
+.|+|+..|+.|+.
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.57 E-value=3.7e-12 Score=122.48 Aligned_cols=285 Identities=18% Similarity=0.212 Sum_probs=218.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+.++.++..+.+++.++...|+..|.++++. .+..+.+++.+.++.|..++..++ +.++..+..++.+++..+++..
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHH
Confidence 4688899999999999999999999999864 566667889999999999998877 7899999999999999999999
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhH-----HHHHHHHHHh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLS-----MLRNATWTLS 228 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~-----~~~~a~~~L~ 228 (384)
..+.+.|+++.++..|.++|.-++..++.+|..++. .+.....+.+.|+++.|.+.+....... ..........
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999 5557788899999999999995443222 3334446677
Q ss_pred hhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc-CC----hHHHHHhcCCCChhhH
Q 016714 229 NFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA-GV----CPRLVELLMHPSATVL 303 (384)
Q Consensus 229 ~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~-g~----~~~L~~lL~~~~~~v~ 303 (384)
+++...|.........++..+..++.+.|+..+..|+.+++.++...+......... +. +..+.....+...+++
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 777764443333345566667777889999999999999999987655543331333 23 4444444566777899
Q ss_pred HHHHHHHHHhhcCChH-H-------HHHHHH---cCchH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 016714 304 IPALRTVGNIVTGDDA-Q-------TQFVID---NGVLP-CLYQLLTQNHKKSIKKEACWTISNITAGNRAQ 363 (384)
Q Consensus 304 ~~a~~~l~nl~~~~~~-~-------~~~i~~---~g~l~-~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 363 (384)
..++.+++++...... . +....+ .+-.. .+..+++.+ -+++|-.+...+..++...-.+
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~Wg~ 425 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQPWGQ 425 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999543221 1 122222 23444 788888887 7899999988888888744333
No 23
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.55 E-value=3e-13 Score=129.12 Aligned_cols=239 Identities=21% Similarity=0.230 Sum_probs=190.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc--hh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS--CR 195 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~ 195 (384)
-+|..+.+|.+.+ +.+|-.|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.||..+... ++
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4788999999988 89999999999999999999999999999999999999999999999999999999976554 77
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc---c-----------CCHhHH
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH---L-----------NDEEVL 261 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~---~-----------~~~~i~ 261 (384)
-.+.+.++++.++++|....|.++.+.++.+|+||+.. .......+...++.|...+- + .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999997778999999999999999998 33444455556665554331 1 135678
Q ss_pred HHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcC--------------------------------------------
Q 016714 262 TDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLM-------------------------------------------- 296 (384)
Q Consensus 262 ~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~-------------------------------------------- 296 (384)
..+..||.|++....+..+.+.+. |+++.|+..+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 889999999988666555555443 55555544443
Q ss_pred ----------------------------------------------------------CCChhhHHHHHHHHHHhhcCCh
Q 016714 297 ----------------------------------------------------------HPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 297 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
+.++.+.+.++.+|-|++.+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 1122335778888999987653
Q ss_pred ----HHHHHH-HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 319 ----AQTQFV-IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 319 ----~~~~~i-~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
.....+ ....+++.|+.+|..+ ++.+.+.++.+|.|++.+
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD 596 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC
Confidence 223333 5778999999999999 899999999999999973
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.55 E-value=1.7e-13 Score=106.29 Aligned_cols=115 Identities=39% Similarity=0.586 Sum_probs=108.2
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (384)
.++++.+++++.++++.++..++++|++++...++....+.+.|+++.++++|.++++.++..++++|+|++...+....
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 57899999999999999999999999999999888888889999999999999999999999999999999998888888
Q ss_pred HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 323 FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 323 ~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+.+.|+++.+.+++... +..+++.++|+|.|+++
T Consensus 86 ~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 889999999999999998 89999999999999974
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=6.1e-13 Score=115.18 Aligned_cols=194 Identities=21% Similarity=0.224 Sum_probs=161.9
Q ss_pred HhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 157 IEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 157 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
.+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ .++++.++..|+|+|.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence 556678999999985 68999999999999987655 5899999999999999999 77899999999999999998754
Q ss_pred CCChhhhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 236 PTPFEQVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
+. ..++..++.+.+.+.+ -|.+++..++++|.+|+..++.. .++ .+.++.++.+|.+++..++..++++|.|+
T Consensus 87 n~--~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQ--EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 33 2334567766665433 36789999999999998765432 233 34689999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+. ++..+..++..+++..++.++......++-..+.+.+.||..
T Consensus 162 S~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 87 667778899999999999999987678889999999999975
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.53 E-value=8e-13 Score=117.51 Aligned_cols=306 Identities=11% Similarity=0.022 Sum_probs=227.8
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR------HDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~ 147 (384)
+.++.+.+...|++.++..+..++|.+++..+ ++++..+.+.|+-..+++.|+. +.+.+....++..|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777777888999999999999998876 8999999999998877777763 1224677778889999999
Q ss_pred CCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHH
Q 016714 148 GTSEHTRVVIEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNAT 224 (384)
Q Consensus 148 ~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~ 224 (384)
++.+.+..+.+.|+++.|...+. -++...-+.+....+|+..- .+...+...+......+++++.....+++.+-+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 99999999999999999988775 36777778888888887642 2224455666677778888886666777888888
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhcc-CC-------HhHHHHHHHHHHHhccCChHHHHHHHHcC-ChHHHHHhc
Q 016714 225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHL-ND-------EEVLTDACWALSYLSDGPNDKIQAVIEAG-VCPRLVELL 295 (384)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-~~-------~~i~~~a~~~l~~l~~~~~~~~~~~~~~g-~~~~L~~lL 295 (384)
..|...+.++.-.-.....|.+..+..+++. .+ -.....++....-+..+++.. +.+...+ +++.++.++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence 8888888875433333346777777777754 11 224455566666666665543 4555555 899999999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 016714 296 MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN----HKKSIKKEACWTISNITAGNRAQIQVHDSFH 371 (384)
Q Consensus 296 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~ 371 (384)
.+++...+..+..+|||++..++ ..-.+++.|.+..|+.++... .+-.++..++.+|.|++-- ......++.+|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999998554 555688889999999998752 1556777899999999961 11223577787
Q ss_pred c------cccCCCccccc
Q 016714 372 L------FVLHEDFSLYF 383 (384)
Q Consensus 372 ~------ll~~~~~~~~~ 383 (384)
+ .++...+++.|
T Consensus 403 vteaIL~~lk~~~ppv~f 420 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTF 420 (604)
T ss_pred hHHHHHHHHHhcCCcchH
Confidence 7 35555555544
No 27
>PRK09687 putative lyase; Provisional
Probab=99.50 E-value=2.8e-12 Score=113.57 Aligned_cols=207 Identities=15% Similarity=0.128 Sum_probs=162.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
-++.|+.+|.+++ ..++..++++|..+.. ..+++.+..++.++++.++..++|+|+.|-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4788999999988 8999999999998754 24678888899999999999999999998543221
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND 277 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~ 277 (384)
....++.|..++..++++.++..++.+|.+++...+.. ....++.+...+.++++.++..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11256677777668888999999999999997653222 12356667778888899999999999987642 1
Q ss_pred HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 278 KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 278 ~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
..++.|+.+|.++++.++..|+.+||.+..+++ .+.+.|..++.+. ++.+|.+|+|+|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 247899999999999999999999999954344 2455688889888 9999999999999864
Q ss_pred cCCHHHHHHHHh
Q 016714 358 AGNRAQIQVHDS 369 (384)
Q Consensus 358 ~~~~~~i~~l~~ 369 (384)
++..+..+++
T Consensus 221 --~~~av~~Li~ 230 (280)
T PRK09687 221 --DKRVLSVLIK 230 (280)
T ss_pred --ChhHHHHHHH
Confidence 5566666654
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.42 E-value=6.9e-11 Score=108.99 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=205.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
....++..|+.+|.-++..|+..+..+++.. ..........-.++.+...|++++....+.-|+.+|..+... ++.|.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 4577778888888889999999999998754 222222111124455666666544468888899999999884 88999
Q ss_pred HHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 155 VVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
.+.+.++++.|+.+|+. .+..++-+++.+++-++.+.+ ..+.....+.++.|++++.....+.+.+-++.+|.||..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999986 256888899999999987766 445566788999999999888889999999999999998
Q ss_pred CCC----C--CChhhhhchHHHHHHhhcc---CCHhHHHHHHHH-------HHHhcc------------------C-C--
Q 016714 233 GKP----P--TPFEQVKPALPILQRLIHL---NDEEVLTDACWA-------LSYLSD------------------G-P-- 275 (384)
Q Consensus 233 ~~~----~--~~~~~~~~~~~~L~~lL~~---~~~~i~~~a~~~-------l~~l~~------------------~-~-- 275 (384)
... . .....+...++.++..|.. .|+++..+.-.. +..++. + +
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 541 1 1112234345555555543 466554443222 122221 1 1
Q ss_pred --hHHHHHHHHc--CChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHH
Q 016714 276 --NDKIQAVIEA--GVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEAC 350 (384)
Q Consensus 276 --~~~~~~~~~~--g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~ 350 (384)
.++...+.+. .++..|+++|. ++++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 1233333333 35788999994 56788888999999999999998888888899999999999999 999999999
Q ss_pred HHHHHHhc
Q 016714 351 WTISNITA 358 (384)
Q Consensus 351 ~~L~nl~~ 358 (384)
.|+.-+..
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99987754
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.42 E-value=4.5e-12 Score=112.81 Aligned_cols=279 Identities=15% Similarity=0.131 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 016714 87 DPALQLEATTQFRKLLSIE--RSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPM 164 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~ 164 (384)
+..+...+..++.+....+ ++...+..+++|.+..|.+..++++ .++..+++++|+|+|.++.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3445556666666654321 1222333456788888888888887 899999999999999999999999999999888
Q ss_pred HHHhhcC-------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-ccchhHHHHH----HHHHHhhhhc
Q 016714 165 FVQLLSS-------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN-EHSKLSMLRN----ATWTLSNFCR 232 (384)
Q Consensus 165 L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~-~~~~~~~~~~----a~~~L~~L~~ 232 (384)
++.+|+. .+.+....+...|.|..-++...+..+++.|+++.|...+. ..++....+. ....++-+|.
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8888864 23567778889999999999999999999999999988874 2233333333 3333333333
Q ss_pred CCCCCChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-CC-------hhhH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-PS-------ATVL 303 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-~~-------~~v~ 303 (384)
.- ..+-....+...++++|.+ ..+++..-+...+.+.+.++.-.. .+.+.|.++.+..++.. .+ -...
T Consensus 214 ~~--~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 214 ML--YPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred hh--hhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 21 1111223444556666643 356777778888899888766444 46788999999998854 21 1223
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcC-chHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 304 IPALRTVGNIVTGDDAQTQFVIDNG-VLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~i~~~g-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
..++..+.-+..|++.. +++...+ +++.+...+.+. +....-.+..+++|++.. .+.+.++++.|+
T Consensus 291 k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~ 357 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDF 357 (604)
T ss_pred HhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHH
Confidence 34555555566666554 3444444 899999999999 899999999999999984 455666777776
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.36 E-value=2.8e-10 Score=117.18 Aligned_cols=239 Identities=19% Similarity=0.175 Sum_probs=147.8
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
..++.|+..|.++++.++..|+..|..+.. .+.++.|+..|++++ +.++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence 357889999999999999999999987632 236888999998887 899999999998774311
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC------------chhhH----HHhcCChHHHHHHhcccchh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP------------SCRDL----VLSSGALMPLLAQLNEHSKL 217 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------------~~~~~----i~~~g~i~~L~~~l~~~~~~ 217 (384)
...+.|...|.++++.++..++.+|+.+....+ ..|.. +...+..+.|+..+ .+.+.
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~ 756 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENR 756 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCH
Confidence 112344455555555555555555554421110 00000 00001122333444 44455
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714 218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
.++..++.+|..+....+ ..++.|..++.++|+.++..++.+|+.+.... .+.+.+...|.+
T Consensus 757 ~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d 818 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRA 818 (897)
T ss_pred HHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcC
Confidence 555555555555543311 12556666677777777777777777663321 112446666677
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
+++.++..|+.+|+.+.. ...++.|..+|.++ +..||++|+++|+.+ .+++.....+
T Consensus 819 ~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~a~~~L 875 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPAARDAL 875 (897)
T ss_pred CChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHHHHHHH
Confidence 777777777777776532 13457788899888 899999999999997 3455554444
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=6.9e-10 Score=100.43 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=202.7
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
..+..+++.|..++.++.......|.++.-. .++...+.+.|++..|++++...+ ++++..++..|.|++.+ ...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-cccc
Confidence 3567889999999988888788888877554 678888999999999999999988 99999999999999996 7788
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+++.|.+|.+..+|.++.. ...|+..|+.++.++. .+.++....+++.+.+.+....+.++-.......-|||-+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 899999999999999987543 3457788888888776 6788888888888888776666655555555445566655
Q ss_pred CCCCChhhhhch-------------------------------------HHHHHHhhcc-CCHhHHHHHHHHHHHhccCC
Q 016714 234 KPPTPFEQVKPA-------------------------------------LPILQRLIHL-NDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 234 ~~~~~~~~~~~~-------------------------------------~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~~ 275 (384)
+.+.....-... +.-|...+.. +++....++++++++|.-.+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d 536 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD 536 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence 432221111111 1111112222 33456677777777776521
Q ss_pred -------------------------------------------hHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHH
Q 016714 276 -------------------------------------------NDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTV 310 (384)
Q Consensus 276 -------------------------------------------~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l 310 (384)
......+..+|+++.|+++|+. .+.++....+.++
T Consensus 537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 1222233456788888888853 4556667777777
Q ss_pred HHhhcCChHHHHHHHHc-CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714 311 GNIVTGDDAQTQFVIDN-GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDS 369 (384)
Q Consensus 311 ~nl~~~~~~~~~~i~~~-g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~ 369 (384)
..+..+ +...+.+++. ..-.++++++.+. +.++|+.+-.+|--|+..+++-.+++..
T Consensus 617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~d~EWAKrI~~ 674 (791)
T KOG1222|consen 617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEHDKEWAKRIAG 674 (791)
T ss_pred HHHHHH-HHHHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 777765 3344555554 4455689999888 8999999999999888877776655543
No 32
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4e-10 Score=99.28 Aligned_cols=187 Identities=22% Similarity=0.242 Sum_probs=155.2
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 016714 83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAV 162 (384)
Q Consensus 83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i 162 (384)
-.+.+.+.+..|+..|..++-. -++...++..|+...++.++++++ +.+|..|+|+|+.++..|+.....+++.|+.
T Consensus 92 ~~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 3466788999999999988753 788889999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-chhHHHHHHHHHHhhhhcCCCCCChh
Q 016714 163 PMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFE 240 (384)
Q Consensus 163 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (384)
+.|+..+.+ ++..++..|++|++.+..+.+...+.+...++...|...+... .+..+++.++..+..|..........
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999986 4567889999999999999999999999999999999999543 57889999999999999876433333
Q ss_pred hhhchHH-HHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 241 QVKPALP-ILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 241 ~~~~~~~-~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
.....++ .+..+..+.+.++...++.++..+.
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 3333344 4555566667777777777665554
No 33
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.26 E-value=8.8e-10 Score=98.40 Aligned_cols=280 Identities=14% Similarity=0.098 Sum_probs=204.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
-+.+++.+...+.-+...+.+.+.++.+.. +.........=....|...++++.+++...-|++||..+... ++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 467788888888888887888888887754 222211111112334455555544478888899999999885 888999
Q ss_pred HHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 156 VIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
++..+++..++..+.+ .+-.++-+.+.+++-+.-.++.. +.+...+.|+.|..++..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998999999998843 56788889999999998776644 56677789999999998888899999999999999997
Q ss_pred CCCCC------hhhhhchHHHHHHhhc---cCCHhHHHHHHHHHHHh-------ccCC----------------------
Q 016714 234 KPPTP------FEQVKPALPILQRLIH---LNDEEVLTDACWALSYL-------SDGP---------------------- 275 (384)
Q Consensus 234 ~~~~~------~~~~~~~~~~L~~lL~---~~~~~i~~~a~~~l~~l-------~~~~---------------------- 275 (384)
.+... ...+.+-++..++.|. .+|+++..+.-..-..| +..+
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 64322 1223444555555553 34666655544332222 2211
Q ss_pred -hHHHHHHHHc--CChHHHHHhcCCC-ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHH
Q 016714 276 -NDKIQAVIEA--GVCPRLVELLMHP-SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACW 351 (384)
Q Consensus 276 -~~~~~~~~~~--g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~ 351 (384)
.+++..+.+. .++..|+++|..+ +|.+..-||.=||..+...|+....+.+.|+=..+++++.++ +++||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 1222333333 5688999999665 588889999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcC
Q 016714 352 TISNITAG 359 (384)
Q Consensus 352 ~L~nl~~~ 359 (384)
++.-+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 98877643
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.21 E-value=4.3e-09 Score=98.80 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=95.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
++..+.+.+++..+.|..-..+++.+. +++...+++.|.++.+..++...+ .++++.+.+-+++..+.+.......+.
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 344556678888889999999998875 666668999999999999997654 367787888888888888888999999
Q ss_pred hcCChHHHHHhhcCCC-HHHHHHHHHHHHhhhCCCC
Q 016714 158 EHGAVPMFVQLLSSGS-DDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 158 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~ 192 (384)
+.+.++.|..+|.+++ ..+++.++.++.++...++
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 9999999999999988 8999999999999987664
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.3e-09 Score=104.55 Aligned_cols=250 Identities=17% Similarity=0.159 Sum_probs=199.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHH-HhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTN-VASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
+..|++-|....++..|.+|+.-|+. |.-++.+...-+--.-.+|.|+.+|+. .+.++.-.|+.||.+++.-.|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 55566666655338888888877765 555666655545445689999999987 5789999999999999988777778
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-C
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG-P 275 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~-~ 275 (384)
.+++.++||.|+..|..-.-.++.+.++.+|-.+++..| ......|.+...+.+|.--...++..|+.+..|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888999999999999777778899999999999999743 3344478888888888777788999999999999975 2
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC---ChHHHHHHHHcCchHHHHHHhccCC---chhHHHHH
Q 016714 276 NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG---DDAQTQFVIDNGVLPCLYQLLTQNH---KKSIKKEA 349 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~i~~~g~l~~L~~ll~~~~---~~~v~~~a 349 (384)
.+....++ ..+|.|..+|.+.+.+..+.++-++..++.+ .++..+.+..+|++....+++.-.+ +..+.--.
T Consensus 327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 23333444 4599999999999999999999999999754 5677788889999999999998653 33455667
Q ss_pred HHHHHHHhcCCHHHHHHHHhCCc
Q 016714 350 CWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 350 ~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
...|+-++.+++.....+...||
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I 427 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDI 427 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhH
Confidence 88899999999999999999988
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=7.3e-09 Score=106.85 Aligned_cols=229 Identities=18% Similarity=0.179 Sum_probs=154.9
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc---
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS--- 150 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--- 150 (384)
..++.|+..|.++++.++..|+..|..+.... + ..+.|...|++++ +.++..|+.+|..+..++.
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~~~~~l 719 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---------PAPALRDHLGSPD-PVVRAAALDVLRALRAGDAALF 719 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---------chHHHHHHhcCCC-HHHHHHHHHHHHhhccCCHHHH
Confidence 45788999999999999999999988774211 1 1233444444444 5555555555544321110
Q ss_pred ---------hhHHH----HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh
Q 016714 151 ---------EHTRV----VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL 217 (384)
Q Consensus 151 ---------~~~~~----i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~ 217 (384)
..+.. +...+..+.|..++.++++.++..++.+|+.+....+ ..++.|..++ .+.++
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll-~D~d~ 789 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALT-GDPDP 789 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHh-cCCCH
Confidence 00000 0011223455666677777777777777776643322 1356777777 77789
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714 218 SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
.++..++.+|..+... ....+.+...|.++++.++..|+++|+.+.. ...++.|+.+|.+
T Consensus 790 ~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D 849 (897)
T PRK13800 790 LVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTD 849 (897)
T ss_pred HHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcC
Confidence 9999999999888543 1233567888999999999999999998742 1235899999999
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
++..|+..|+++|+.+. +++. ..+.|...+++. +..||++|..+|..
T Consensus 850 ~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 850 PHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS-DADVRAYARRALAH 896 (897)
T ss_pred CCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence 99999999999999972 2332 345677889888 99999999999863
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.17 E-value=1.1e-09 Score=107.36 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=142.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
...+.+++.+.+++...+.-+--.+..+...+ +..-.+ +++.+.+=|.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 35677777777777777776666666554322 211111 4566666677766 7778888888887763 3333
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.. .++.+..++.++++.+|..|+.++..+....|.. +-.. .++.+..++ .+.++.+..+|+.++..+ ..
T Consensus 113 ~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 22 3566777777777788888888888777655432 1122 466666777 666677777777777777 21
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
.+..........++.|.+++...++..+..++.++..++......... ..+++.+..++.+.++.+...+++++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111101233445555555556667777777777777766554433311 22344444444444455555555555544
Q ss_pred hcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 314 VTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 314 ~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
....+ .-..+++.|..++.++ ++.++-.++.++..++.
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCC
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhc
Confidence 43221 1112344455555544 44455555555555544
No 38
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.1e-09 Score=104.15 Aligned_cols=277 Identities=18% Similarity=0.214 Sum_probs=199.1
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 76 IPSMVQGVWS--EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 76 l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+..++..... ++..+++.|+.+|.+-+-+.+...-.+.-..=++...++.-+.++ .+++..|..||..|.+-+.+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555553 346789999999988765542222222223345666777777777 8999999999999999888888
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc----------------hhhH--HHhcCChHHHHHHhccc-
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS----------------CRDL--VLSSGALMPLLAQLNEH- 214 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----------------~~~~--i~~~g~i~~L~~~l~~~- 214 (384)
........++.-+.-++++++++.-+++...+++|.+.-. .... -.-.+.+|.|+++|...
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 8888777788888888999999999999999998842211 0000 01124677888888542
Q ss_pred -----chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChH
Q 016714 215 -----SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCP 289 (384)
Q Consensus 215 -----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~ 289 (384)
.+......+..+|.-+++...+ ..+..++|.+-.-++++|..-+..+.-+++.+..+++.....-+-.+++|
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 1233455555555555544322 23347788888889999999999999999999998776555545568899
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.++.++.+++-.++..+.|++|.++.+.++.+. ...-.+.++.++.-|.+. |.+..++||++.+++.
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHH
Confidence 999999988888999999999999987664432 222345677777777654 8899999999999993
No 39
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=6e-10 Score=104.34 Aligned_cols=262 Identities=18% Similarity=0.217 Sum_probs=178.0
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc--------CCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA--------GVVPRFVEFLGRHDMPQLQFEAAWALTNV 145 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~--------g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl 145 (384)
+.+|.|.++|.+.+...+.-|..+|.+++-.+ ..+++. -.+|.++++.++++ |.+|.+|..|+...
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-----a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-----AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-----HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhhe
Confidence 45899999999999999999999999986432 122222 36899999999998 99999999999776
Q ss_pred hcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh--cCChHHHHHHhcccchhHHHHHH
Q 016714 146 ASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS--SGALMPLLAQLNEHSKLSMLRNA 223 (384)
Q Consensus 146 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~~l~~~~~~~~~~~a 223 (384)
.-..+.....-++ ..+..+..+-.++++++|.+.+.+|.-+..-.+. .+.. .++++.++..- ++.|+++.-.|
T Consensus 202 i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~t-qd~dE~VALEA 276 (885)
T KOG2023|consen 202 IIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRT-QDVDENVALEA 276 (885)
T ss_pred eecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHc-cCcchhHHHHH
Confidence 5533332222222 3456666777789999999999999998754442 2221 23445555554 66788899999
Q ss_pred HHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCC------------------------------------------
Q 016714 224 TWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLND------------------------------------------ 257 (384)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~------------------------------------------ 257 (384)
|.....++..+ ...... ..++|.|+.-+..++
T Consensus 277 CEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD 354 (885)
T KOG2023|consen 277 CEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED 354 (885)
T ss_pred HHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence 99998899874 223333 556666654332111
Q ss_pred --------------HhHHHHHHHHHHHhccCChHHHHHHHHcC----ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 016714 258 --------------EEVLTDACWALSYLSDGPNDKIQAVIEAG----VCPRLVELLMHPSATVLIPALRTVGNIVTGDDA 319 (384)
Q Consensus 258 --------------~~i~~~a~~~l~~l~~~~~~~~~~~~~~g----~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 319 (384)
..++..++.+|.-|+. +.... ++|.|-+.|.++...+++.++.++|.|+.|.-.
T Consensus 355 dddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 355 DDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred ccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence 1233333333333332 22223 356666666788899999999999999987643
Q ss_pred HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 320 QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 320 ~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
..-.-+ ..++|.|+.+|.+. .+-||+-+||+|+..+.
T Consensus 427 g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 427 GFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSK 463 (885)
T ss_pred hcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhh
Confidence 321111 14789999999998 99999999999999884
No 40
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3e-08 Score=98.89 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=186.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++-+.+..+|.++..|..|+..|..+...-.+..... -..+.+.|.+.+.+++.+ ++..|+++++.++...+..+.
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence 36667777789999999999999887643210111100 012455666677777745 999999999998876542232
Q ss_pred HHHhc-CChHHHHHhhc----CCCHHHHHHHHHHHHhhhCCCCch-hhHHHhcCChHHHHHHhccc-chhHHHHHHHHHH
Q 016714 155 VVIEH-GAVPMFVQLLS----SGSDDVREQAVWALGNVAGDSPSC-RDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTL 227 (384)
Q Consensus 155 ~i~~~-g~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~-~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L 227 (384)
.+-.. ..+|.++..+. .++.+....++.+|-.++...+.+ +..+.+ ++...+....+. -+..++..|+..|
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHH
Confidence 22221 24666665554 466666677777777777655432 222111 222222222111 1222222222222
Q ss_pred ------------------------------------------------------------hhhhcCCCCCChhhhhchHH
Q 016714 228 ------------------------------------------------------------SNFCRGKPPTPFEQVKPALP 247 (384)
Q Consensus 228 ------------------------------------------------------------~~L~~~~~~~~~~~~~~~~~ 247 (384)
-.++.+-+. ......+++
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~ 351 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFE 351 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHH
Confidence 222222110 111234566
Q ss_pred HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714 248 ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN 327 (384)
Q Consensus 248 ~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 327 (384)
.+-.+|++.++.-+..++.+|+.++.+..+.....+ ..+++.++..|.++++.|+..||.++|.+++.-....+.--..
T Consensus 352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 677788999999999999999999999887665533 3678899999999999999999999999998766666666666
Q ss_pred CchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHh
Q 016714 328 GVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDS 369 (384)
Q Consensus 328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~ 369 (384)
-+++.|+..+.+...+.++..|+-++-|+.. ..++.+...++
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 7888999999998788999999999999997 56666665544
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.6e-09 Score=92.14 Aligned_cols=183 Identities=18% Similarity=0.232 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL 211 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l 211 (384)
++-+..|..-|..++. +-++-..++..|+...++.++.+.+..+|+.|+|+++..+.++|..+..+++.|++..|+..+
T Consensus 97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 6778888888888877 478888899999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChHHHHHHHHcCCh
Q 016714 212 NEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVC 288 (384)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~ 288 (384)
..+.+..++..++++++.|.++.+..... ...++...|...+++ .+...+..++..++++..........+...+..
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 76777788899999999999987443333 335668899999988 567788999999999998876665555566777
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 289 PRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
..+..+....+..+.+.++.++.....
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777777777777888888887777654
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.09 E-value=7.3e-09 Score=101.53 Aligned_cols=250 Identities=17% Similarity=0.211 Sum_probs=180.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+..+.+.+.++++.++..|++++.++.. .+ +++ .+++.+.+++.+++ +.+|..|+.++..+...+++..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~----~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~- 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PE----MAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLV- 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HH----HHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCH-
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cc----hhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHH-
Confidence 56777888889999999999999998853 12 222 25888999999988 9999999999999987555432
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhh
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~ 231 (384)
... .++.+..+|.+.++.++..|+.++..+ ...+.. .. ..++.++..|. ...++-.+..++.+|..++
T Consensus 150 --~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~----~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 150 --EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS----YK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp --HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH----HT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred --HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch----hh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 222 589999999999999999999999999 222211 00 23444444443 5667878888898888887
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
...+.... ...+++.+..++++.++.++..++.++..+..... .-..+++.|..+|.++++.++..++.+|.
T Consensus 221 ~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 221 PMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 65321110 05678888888888899999999999998876543 22346788999999888899999999999
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHhc-cCCchhHHHHHHHHHHHHhc
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLLT-QNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~ 358 (384)
.++...+.. +. . .......+. ++ +..+|..+.-+|.+++.
T Consensus 293 ~l~~~~~~~----v~-~-~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 293 QLAQSNPPA----VF-N-QSLILFFLLYDD-DPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHCCHCHHH----HG-T-HHHHHHHHHCSS-SHHHHHHHHHHHHHH--
T ss_pred Hhhcccchh----hh-h-hhhhhheecCCC-ChhHHHHHHHHHhhccc
Confidence 998766222 11 1 222233444 55 78899999888888884
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.07 E-value=6.2e-09 Score=94.50 Aligned_cols=232 Identities=16% Similarity=0.191 Sum_probs=161.0
Q ss_pred CHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCchhHHHHHhc------CChHHHHHhhcCCCHHHHHHHHHHHHhhhCC
Q 016714 118 VVPRFVEFLGRH-DMPQLQFEAAWALTNVASGTSEHTRVVIEH------GAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190 (384)
Q Consensus 118 ~i~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~------g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 190 (384)
....++.+|+.- .++++....+..+..+..+.+...+.+... .....++.++.+++..+...|+..|..++..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 455666666544 348999999999999999888777777762 2678888999999999999999999999877
Q ss_pred CCchhhHHHhcCChHHHHHHhcc---cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-----c--cCCHhH
Q 016714 191 SPSCRDLVLSSGALMPLLAQLNE---HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI-----H--LNDEEV 260 (384)
Q Consensus 191 ~~~~~~~i~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL-----~--~~~~~i 260 (384)
++...... ..+.++.++..+.. +.+.+.+..++.+|.+|.+.++........++++.+..++ . ..+..+
T Consensus 136 ~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 65432221 13466777777743 3455677899999999998753333333488999999988 2 235778
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchHHHHHHhc
Q 016714 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~L~~ll~ 338 (384)
+.+++.|++-|+..+ +....+.+.++++.|+.+++ ....++..-++.++.|++...+. ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 999999999998664 45567788899999999995 45789999999999999987654 6777888888888877776
Q ss_pred cCC-chhHHHHHHH
Q 016714 339 QNH-KKSIKKEACW 351 (384)
Q Consensus 339 ~~~-~~~v~~~a~~ 351 (384)
... |+++....-+
T Consensus 294 rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 294 RKWSDEDLTEDLEF 307 (312)
T ss_dssp S--SSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 543 6677665444
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=99.05 E-value=3.6e-07 Score=90.97 Aligned_cols=216 Identities=14% Similarity=0.095 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
.+.+++.+.+++.+++.-..-.+.++.... +....+ +++.|.+=+.+++ |.+|-.|++.+++|-. ++...
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e- 139 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE- 139 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH-
Confidence 455555555555555555555554443221 111111 2555555555555 6666666666665533 12111
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
-.++.+.+.+.+.++-||..|+.++.++...++ +.+.+.|.++.|.++| .+.++.++.+|+.+|..++...+
T Consensus 140 ----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 140 ----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence 123445555556666666666666666654433 4444455556666655 55566666666666666655432
Q ss_pred CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
.......+.+..|...|...++..+..++.+|....-.+.... ..++..+...|++.++.|.-.|++++.++..
T Consensus 212 -~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 212 -EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred -hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 2333334444445555555556666666555544322222211 2345556666666666666666666666554
No 45
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=2.3e-08 Score=98.24 Aligned_cols=273 Identities=18% Similarity=0.218 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714 89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL 168 (384)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 168 (384)
..|+.|-...-..-+.++.|+-+ +|.+++.|-+ ..-+..|+..|+....-.+-.....+.-|++|+.+++
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL 520 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL 520 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 56777777766666666666654 6666666654 4568889999998877778888888889999999999
Q ss_pred hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--hhHHHHHHHHHHhhhhcCCCCCChhhh-hch
Q 016714 169 LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPTPFEQV-KPA 245 (384)
Q Consensus 169 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~ 245 (384)
|+++-.+++...+++...|-.-++.++..+++.++-..++..|..++ +++-+.-++++|+.++++.+..+.... .++
T Consensus 521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l 600 (1387)
T KOG1517|consen 521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL 600 (1387)
T ss_pred hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence 99999999999999999887766778888888888777888775422 457778899999999998654444444 566
Q ss_pred HHHHHHhhccC-CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC----ChHH
Q 016714 246 LPILQRLIHLN-DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG----DDAQ 320 (384)
Q Consensus 246 ~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~~ 320 (384)
+......|.++ .+-++..+|-||+.|=...++..-.=...++.+.|..+|.++-++|+..|+.+||.+..+ .+++
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 77777777774 577899999999999876554433335668899999999999999999999999999875 3333
Q ss_pred HHHH------------HHcCc---hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 321 TQFV------------IDNGV---LPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 321 ~~~i------------~~~g~---l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
+..+ ++..+ +..++.+++.+ .+-++++.+-+|+.++.|...++..+.-+..
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~ 746 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYL 746 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhc
Confidence 3322 12111 23577778888 8999999999999999999888777665444
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=99.04 E-value=3.9e-07 Score=90.73 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=132.0
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
-.+..+.+.+.+.|+.++-.|++.+..+-. +. +++ -+++.+.+.|.+.+ |-++..|+.|+.++...+++
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~---i~e-~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pe-- 173 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SS---VLE-YTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQ-- 173 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HH---HHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcc--
Confidence 356777788888888888888888775522 22 222 14667788888888 99999999999999775553
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.+.+.|.++.|..+|.+.++.++..|+.+|..+...++ ...-...+.+..|+..+ ..-++-.+..++.+| +..
T Consensus 174 -lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~--~~l~l~~~~~~~Ll~~L-~e~~EW~Qi~IL~lL---~~y 246 (746)
T PTZ00429 174 -LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS--EKIESSNEWVNRLVYHL-PECNEWGQLYILELL---AAQ 246 (746)
T ss_pred -cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc--hhhHHHHHHHHHHHHHh-hcCChHHHHHHHHHH---Hhc
Confidence 44567889999999999999999999999999987655 24334444444455555 445665555555555 444
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
.|... .....++..+...|++.++.|.-.|+.++.++...
T Consensus 247 ~P~~~-~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 247 RPSDK-ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred CCCCc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 44332 33467888888999999999999999999998755
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.1e-07 Score=89.29 Aligned_cols=293 Identities=20% Similarity=0.205 Sum_probs=220.4
Q ss_pred cCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCc-
Q 016714 74 ESIPSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-DMPQLQFEAAWALTNVASGTS- 150 (384)
Q Consensus 74 ~~l~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~- 150 (384)
+.|+.|+..+.++. .+.+..|++.|..+.. ..+..+. .-+++.|++.|..+ .++++...++..+.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 46889998887665 7889999999987642 3344444 44599999999753 248999999999999877542
Q ss_pred -----hh----------HHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhc-CChHHHHHHhc
Q 016714 151 -----EH----------TRVVI-EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSS-GALMPLLAQLN 212 (384)
Q Consensus 151 -----~~----------~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~-g~i~~L~~~l~ 212 (384)
+. .+.++ ..+.|..|+..+...+-.||..++..|.++... ++..++.++.. -+|..|+.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 12233 357788899999999999999999999998754 44577766654 4688899999
Q ss_pred ccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccC---C-HhHHHHHHHHHHHhccCChHHHHHHHHcCC
Q 016714 213 EHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLN---D-EEVLTDACWALSYLSDGPNDKIQAVIEAGV 287 (384)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~---~-~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~ 287 (384)
.+..+.++-.++..|..|+++.+.....+. .+++..|..++... | .-|..+|+..+.+|...+..+...+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 666777888999999999998766555444 88889898888643 3 368899999999999998888889999999
Q ss_pred hHHHHHhcCC---CCh--------hh--HHHHHHHHHHhhcC-Ch----HHH-HHHHHcCchHHHHHHhccCC-chhHHH
Q 016714 288 CPRLVELLMH---PSA--------TV--LIPALRTVGNIVTG-DD----AQT-QFVIDNGVLPCLYQLLTQNH-KKSIKK 347 (384)
Q Consensus 288 ~~~L~~lL~~---~~~--------~v--~~~a~~~l~nl~~~-~~----~~~-~~i~~~g~l~~L~~ll~~~~-~~~v~~ 347 (384)
+|+|.++|.. .+. .+ ...++.++..++.- +. .+. ..+...+++..|..++-++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988842 221 11 23456666666532 21 222 35667899999999998873 678999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 348 EACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 348 ~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
++.-+++++..|+......+.+..+
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~ 360 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTA 360 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccC
Confidence 9999999999998887777766554
No 48
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.01 E-value=2.3e-08 Score=94.02 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=182.6
Q ss_pred CCCHHHHHHHHHHHH---HHhcCCCCCcHHH----HHHcCCHH--HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH--
Q 016714 85 SEDPALQLEATTQFR---KLLSIERSPPIDE----VIKAGVVP--RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-- 153 (384)
Q Consensus 85 s~~~~~~~~a~~~l~---~l~s~~~~~~~~~----~~~~g~i~--~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-- 153 (384)
......+..|+.+++ +++..+ +..... ..+.|+.+ .+-.++++++ +..+..++.|+.++...+...-
T Consensus 192 ~~s~~~RlaaL~~~sr~~~iL~Nn-~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s~~~d~l 269 (678)
T KOG1293|consen 192 YLSSKLRLAALLCLSRGDRILRNN-PLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKSFNYDPL 269 (678)
T ss_pred hhhHHHHHHHHHHhhccceeeecC-chhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhcccccccc
Confidence 335678888999998 776643 222222 33557666 4666777877 7888999999998877541100
Q ss_pred -----------HHHHh--------cCCh-----HHHHH-----hhc---C-----CCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 154 -----------RVVIE--------HGAV-----PMFVQ-----LLS---S-----GSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 154 -----------~~i~~--------~g~i-----~~L~~-----lL~---~-----~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
..++. .+++ ...+- +.+ . ...+.....+.+-+.++...+.++.
T Consensus 270 ~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~ 349 (678)
T KOG1293|consen 270 PWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRL 349 (678)
T ss_pred ccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhH
Confidence 00000 0110 00000 111 0 0112222233444444455555544
Q ss_pred HHHhcCChHH---------------------HHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhc
Q 016714 197 LVLSSGALMP---------------------LLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIH 254 (384)
Q Consensus 197 ~i~~~g~i~~---------------------L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~ 254 (384)
.++....++. ....+....|..+..+++-++.++++.-....- .....+...|+++++
T Consensus 350 i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~ 429 (678)
T KOG1293|consen 350 ILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM 429 (678)
T ss_pred HHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh
Confidence 4433222111 111111234666777777777777764211000 112456677888888
Q ss_pred cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCch-HHH
Q 016714 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVL-PCL 333 (384)
Q Consensus 255 ~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l-~~L 333 (384)
.++..+...++++|.|+.-.-......++..|+++.+..++.+.++.++..++|+|.++..+.++.........+- ..+
T Consensus 430 dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i 509 (678)
T KOG1293|consen 430 DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLI 509 (678)
T ss_pred CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHH
Confidence 8999999999999999997766667789999999999999999999999999999999999988776655554443 345
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714 334 YQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSF 370 (384)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~ 370 (384)
..+.+++ +..|++.+.-.+.|++.+..+-++++++.
T Consensus 510 ~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 510 LDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 6666666 99999999999999999999999988865
No 49
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.3e-08 Score=89.10 Aligned_cols=271 Identities=18% Similarity=0.129 Sum_probs=190.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714 87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV 166 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 166 (384)
..++...|+..|.+++.. ...-..+...+++..|++.|+.++ .++.......|..++-- .+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence 344555677777777642 223334778899999999999988 78888888899888774 78888999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 016714 167 QLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL 246 (384)
Q Consensus 167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 246 (384)
+++...+++++..++..|.|++-++. .|...+..|.+|.|..++.++.... .|+..+..++-.+..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccch---hhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998876 6778889999999999995554443 3555666677665545555557888
Q ss_pred HHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714 247 PILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFV 324 (384)
Q Consensus 247 ~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 324 (384)
+.+.+.+ ...+.++-...+..--|+|... .+.+.+++-..+..|++.- ++.++ .....+.||+.+.......+
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHH
Confidence 8877665 4445555444444344555432 2344556655666666553 44443 24556778887665444455
Q ss_pred HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
++ .+..|..++...+++..--++..++.|++...-+--+.+-+.++
T Consensus 503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~L 548 (791)
T KOG1222|consen 503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENL 548 (791)
T ss_pred HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccc
Confidence 54 45667777776657778889999999999754444344444444
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=9.3e-09 Score=93.36 Aligned_cols=208 Identities=19% Similarity=0.239 Sum_probs=148.2
Q ss_pred hHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc------CChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 162 VPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSS------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 162 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~------g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
...++.+|+ +.++++....+..+..+..+.+...+.+... ....++++++ ..+|..+...++..|+.+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 444455554 3689999999999999999888766666652 2577888866 667888999999999999988
Q ss_pred CCCCChhhhhchHHHHHHhhc----cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-----CC--CChhh
Q 016714 234 KPPTPFEQVKPALPILQRLIH----LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-----MH--PSATV 302 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~----~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-----~~--~~~~v 302 (384)
.+........+.++.+...+. +++.+++.-++.++..+.... .....+.+.++++.+..+| .+ .+..+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 765555433455565555554 456778899999999998654 4556788899999999999 22 23567
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHhCCc
Q 016714 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR-AQIQVHDSFHL 372 (384)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~i~~l~~~~~ 372 (384)
+-.++.++.-++. +++....+.+.++++.|.+++....++++.+-+.+++.|+....+ ..+..|+.+|+
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~ 284 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL 284 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence 7789999998876 667777788889999999999987789999999999999998443 37888888887
No 51
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.99 E-value=2.2e-07 Score=86.01 Aligned_cols=303 Identities=12% Similarity=0.070 Sum_probs=201.5
Q ss_pred CHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 016714 75 SIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKA-----GVVPRFVEFLGRHDMPQLQFEAAWALTNVASG 148 (384)
Q Consensus 75 ~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-----g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~ 148 (384)
....++..+.. +..++....+..+..++... +.....+.+. .....++.+|..++ .-++..|+.+|+.+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 34566666663 44667777788888888753 4444555553 56778888998877 78999999999998775
Q ss_pred CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhHHHHHHHHH
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLSMLRNATWT 226 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~ 226 (384)
...........-.++.|...+.+ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +.+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 33321111111133455555654 347788888999999987766 7888888999999999996555 67889999999
Q ss_pred HhhhhcCCCCCChhhhhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCC------hHHHHHHHHcCChHHHHHhcCC--
Q 016714 227 LSNFCRGKPPTPFEQVKPALPILQRLIHLN-DEEVLTDACWALSYLSDGP------NDKIQAVIEAGVCPRLVELLMH-- 297 (384)
Q Consensus 227 L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~------~~~~~~~~~~g~~~~L~~lL~~-- 297 (384)
++-|+...+........+++|.++.++... -+.+..-++.++.|+...+ ......++..|+++.+..+...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 999988754222333378999999999765 4668888899999999853 2234456777776655544432
Q ss_pred CChhhHHHHHHHHHHh--------h--------------cCCh---------HHHHHHHHc--CchHHHHHHhccCCchh
Q 016714 298 PSATVLIPALRTVGNI--------V--------------TGDD---------AQTQFVIDN--GVLPCLYQLLTQNHKKS 344 (384)
Q Consensus 298 ~~~~v~~~a~~~l~nl--------~--------------~~~~---------~~~~~i~~~--g~l~~L~~ll~~~~~~~ 344 (384)
.|+++.. .+..+... + ..+| +....+.+. .++..|..+|..+.++.
T Consensus 291 ~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 2333321 11111111 1 1122 222333333 45788999996555788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCc------cccCCCccc
Q 016714 345 IKKEACWTISNITAGNRAQIQVHDSFHL------FVLHEDFSL 381 (384)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~i~~l~~~~~------ll~~~~~~~ 381 (384)
+-.-||.=++.++...|.-...+-+.|. +|.++|.+|
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V 412 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV 412 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence 8888999999999877766666667777 567666554
No 52
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.95 E-value=5.9e-08 Score=87.89 Aligned_cols=266 Identities=13% Similarity=0.111 Sum_probs=179.7
Q ss_pred cCHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 74 ESIPSMVQGVWSEDPA--LQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
+.+..+++++++.+.+ ++.++.+.|..+++ .++.+.+...| +..++.+-+....++++...+.+|.++-.++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5789999999988854 58999999999987 56777777776 555555544433389999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
....++..|+++.++...+..++.+..+|+.+|+|++-+ ....+..+++..+-+-|..+- .+.|.-++-++|-+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999854 344666677766666666655 555777788999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
+..+.........+.+...-.++.+-|+..... --...+.+ .....++.|+.+|+++.-+.+.-++.-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 987643333333454444444555545432111 00001111 1123578899999876655554444443
Q ss_pred HHhhcCC--hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 311 GNIVTGD--DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 311 ~nl~~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
+-=+.-. ...++.+-+-|.++.|..+.+++ +..-.+-|.-+|.-|
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 3322211 12233444669999999999877 544444444444333
No 53
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=8.9e-08 Score=94.24 Aligned_cols=254 Identities=17% Similarity=0.197 Sum_probs=195.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+|.+++-|-|.- -++.|+..|..++... ...+..-+.-|++|.++++|+++. .+++..-+++.+.|.+-++.+..
T Consensus 473 QLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 3455555444322 4567888888888775 666777788899999999999988 89999999999998888899999
Q ss_pred HHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 155 VVIEHGAVPMFVQLLSS---GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
.+++.++-.+++..|.. -+++-+..|+++|+.|+.+.+..+..+++.+.+...+..|.....+-++.-++-+|..|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 99998888888888876 246889999999999999888888889999999989999955445667778888888888
Q ss_pred cCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccC----ChHHHHHH------------HHcCCh---HHH
Q 016714 232 RGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDG----PNDKIQAV------------IEAGVC---PRL 291 (384)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~----~~~~~~~~------------~~~g~~---~~L 291 (384)
.+.+.....-. ..+.+.|..+|..+-++|+..|+.||+.+... .++....+ ++.-+. ..+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 77644444333 67888999999999999999999999998875 23332222 222222 366
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHH
Q 016714 292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPC 332 (384)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~ 332 (384)
+.+++..++-++....-++..++.+...+...+.-...++.
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~ 749 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPE 749 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccc
Confidence 77778889999999999999999887766655544434433
No 54
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=5.6e-08 Score=91.46 Aligned_cols=270 Identities=15% Similarity=0.174 Sum_probs=177.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+|++++..+++.+.++-.|+.++..++-.. +.....- -...+..+..+-.+.+ +++|...+.+|.-+..--++...
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qal~~~-iD~Fle~lFalanD~~-~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQALYVH-IDKFLEILFALANDED-PEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHHHHHH-HHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHhcHHhcc
Confidence 4899999999999999999999988776432 2221111 1234566666666666 99999999999998764333222
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccch-h--------------
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHSK-L-------------- 217 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~~-~-------------- 217 (384)
.-. .+++++.+...++.++++.-.|+.....+|..+ -+++.+... ..+|.|++-+.++.+ .
T Consensus 252 phl-~~IveyML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD 329 (885)
T KOG2023|consen 252 PHL-DNIVEYMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD 329 (885)
T ss_pred cch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence 222 367788888888889999999999999998765 455555432 245555444322111 1
Q ss_pred ----------------------------------------HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC
Q 016714 218 ----------------------------------------SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND 257 (384)
Q Consensus 218 ----------------------------------------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~ 257 (384)
.+++-.+.+|-.|+.- ...+....++|.|-..|.+++
T Consensus 330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~elL~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGDELLPILLPLLKEHLSSEE 406 (885)
T ss_pred hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---hHHHHHHHHHHHHHHHcCcch
Confidence 1122111122222111 011233445666777778888
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHc--CChHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHcCchHHH
Q 016714 258 EEVLTDACWALSYLSDGPNDKIQAVIEA--GVCPRLVELLMHPSATVLIPALRTVGNIVTGD--DAQTQFVIDNGVLPCL 333 (384)
Q Consensus 258 ~~i~~~a~~~l~~l~~~~~~~~~~~~~~--g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~g~l~~L 333 (384)
..+++.+..+++.++.+... -++.+ .++|.|+.+|.+..+-|+.-.||+|+..+..- ++ .+..+. .++.-|
T Consensus 407 W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~l 481 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGL 481 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHH
Confidence 99999999999999987543 22322 47899999999999999999999999987531 12 222222 234445
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhc
Q 016714 334 YQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++-+-++ +..|++.||.++.-+-.
T Consensus 482 l~~llD~-NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 482 LRRLLDS-NKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHH
Confidence 5555566 78999999999998875
No 55
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=6.2e-07 Score=89.79 Aligned_cols=274 Identities=18% Similarity=0.200 Sum_probs=182.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCHHHHHHhh----cCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 79 MVQGVWSEDPALQLEATTQFRKLLSIER--SPPIDEVIKAGVVPRFVEFL----GRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~i~~Lv~lL----~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
+.+.+.+.+..++..|++++..+..... ...++.+ ...+|.++..+ ..++ .+.-..+..+|..++...+..
T Consensus 164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~--~~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF--RDLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH--HHHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhchHH
Confidence 3344455555599999999987765431 1112222 23455555544 4455 666778888888888876666
Q ss_pred HHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHH-------------------------------
Q 016714 153 TRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVL------------------------------- 199 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~------------------------------- 199 (384)
....+. .++..-+.+..+ -+..+|..|+.+|..++..-|.......
T Consensus 241 l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de 319 (1075)
T KOG2171|consen 241 LRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE 319 (1075)
T ss_pred HHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence 655554 345555555554 3466777777777666543221110000
Q ss_pred -------------------hcC---ChHHHHHHh---cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc
Q 016714 200 -------------------SSG---ALMPLLAQL---NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH 254 (384)
Q Consensus 200 -------------------~~g---~i~~L~~~l---~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~ 254 (384)
..| +.+++...+ .++.+..-+.+++.+|+.++.+.+.........+++.++..|.
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 111 122332222 2455666778899999999988755555556788899999999
Q ss_pred cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchH-
Q 016714 255 LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLP- 331 (384)
Q Consensus 255 ~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~- 331 (384)
.+++.|+..||.+++.++..-...++.-...-+++.|+..+.+. ++.++..|+.++-|+....+ +.....++ +++.
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~ 478 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEK 478 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHH
Confidence 99999999999999999987655566666677888999999765 67999999999999987654 44444443 4666
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 332 CLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+..+++++ .+.+++.++-+|+.++.
T Consensus 479 ~l~~L~~~~-~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 479 KLLLLLQSS-KPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHHH
Confidence 455555666 89999999999999996
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.8e-07 Score=86.64 Aligned_cols=278 Identities=14% Similarity=0.159 Sum_probs=186.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
+|-+-+.++++|..-+..|+.++..++.+. ++....-+-.+++|.++.++.++. --++..++|+|+.++...++....
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc
Confidence 455555778899999999999999998764 555555667788999999999766 788899999999999987754433
Q ss_pred HHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-----hhHHHhcCChHHHHHHhcc------cchhHHHHHH
Q 016714 156 VIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-----RDLVLSSGALMPLLAQLNE------HSKLSMLRNA 223 (384)
Q Consensus 156 i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~i~~~g~i~~L~~~l~~------~~~~~~~~~a 223 (384)
... .+.++.++.-|. +.|.+..+++|++.+++...++. ...... ...+.++.-|.. ..+..++..+
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 322 344555555554 46899999999999998321100 000111 123334433321 1345678888
Q ss_pred HHHHhhhhcCCCCCChhhhhchHHHHHH---------hhccCC----HhHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 016714 224 TWTLSNFCRGKPPTPFEQVKPALPILQR---------LIHLND----EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPR 290 (384)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~---------lL~~~~----~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~ 290 (384)
..+|..+....+......+.+..+.+.. .+...| .+++...|.+|..+...-...+.. ....++..
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~l 600 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGL 600 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHH
Confidence 8899999998876666666665555444 222233 356677777777766543323322 22345777
Q ss_pred HHHhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 291 LVELLMH-PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 291 L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
+++++.+ .+..+.+.|+.+++.++..-..+..... ..+.|+|..-|++..+..+...|+..++.++..
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 8888877 4567888899999998865444433333 247888888886665888999999999999863
No 57
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.2e-06 Score=72.31 Aligned_cols=271 Identities=15% Similarity=0.214 Sum_probs=174.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI--KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+..++..+++.+|.++..|+..+..+... +.+.+. +.-.++.+.+++...+ + ...|+.+|.|++.. ...
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l 75 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EEL 75 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHH
Confidence 356889999999999999999888877543 222222 3457888999998876 4 77899999999985 777
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc-----CChHHHHHHhcccc-h-hHHHHHHHH
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS-----GALMPLLAQLNEHS-K-LSMLRNATW 225 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~-----g~i~~L~~~l~~~~-~-~~~~~~a~~ 225 (384)
++.+++. .+..++..+.++-..+....+.+|.|++.+...+....... .++..++..+.+.+ + ..-..+.+.
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 7777776 77778888877766778888999999998877665544322 23444444442322 2 123456777
Q ss_pred HHhhhhcCCCCCChhhhhchHH--HHHHhhccCCHhH-HHHHHHHHHHhccCChHHHHHHH-HcCChHHHH---------
Q 016714 226 TLSNFCRGKPPTPFEQVKPALP--ILQRLIHLNDEEV-LTDACWALSYLSDGPNDKIQAVI-EAGVCPRLV--------- 292 (384)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~~~--~L~~lL~~~~~~i-~~~a~~~l~~l~~~~~~~~~~~~-~~g~~~~L~--------- 292 (384)
.++|+++.............+| .+..+-. .+..+ +...+.+|.|+|......-..+- +..+++.++
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCcccc
Confidence 8888888643222222222332 3333333 44444 45577788887765443322221 112233222
Q ss_pred ------------HhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 293 ------------ELLM-----HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 293 ------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
++|. .+++.++..-+.+|--+|+ +...++.+.+.|+.+.+..+=...+++++++ ||.-+.+
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vvq 311 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVVQ 311 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHHH
Confidence 3332 2467889999999998887 5667777888899888887777764666655 4554444
Q ss_pred Hh
Q 016714 356 IT 357 (384)
Q Consensus 356 l~ 357 (384)
+-
T Consensus 312 ~L 313 (353)
T KOG2973|consen 312 ML 313 (353)
T ss_pred HH
Confidence 44
No 58
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.74 E-value=9.6e-07 Score=79.37 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=169.8
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 78 SMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL-GRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 78 ~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
.+...+++ .+++....++++|.-++.. ++.+..++..+++..++..+ ++.-.-++|++.+.|+.-++.. +...+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~ 236 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEK 236 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHH
Confidence 34444555 5677888899999988764 56677788888899999988 4433379999999999999985 666677
Q ss_pred HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCC------chhhHHHhcCChHHHHHHhccc--chhHHHHHHHHH
Q 016714 156 VIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSP------SCRDLVLSSGALMPLLAQLNEH--SKLSMLRNATWT 226 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~------~~~~~i~~~g~i~~L~~~l~~~--~~~~~~~~a~~~ 226 (384)
+...+.|+.|..++++ ..++|...++.++.|+....+ ......+.. .+++-++.|... +|+++....-..
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7778999999999986 567899999999999997664 222333333 455556666332 355444333222
Q ss_pred Hh----------------------hhhcCCCCCChh------------hhhchHHHHHHhhccC-CHhHHHHHHHHHHHh
Q 016714 227 LS----------------------NFCRGKPPTPFE------------QVKPALPILQRLIHLN-DEEVLTDACWALSYL 271 (384)
Q Consensus 227 L~----------------------~L~~~~~~~~~~------------~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l 271 (384)
-. .|+.. |..... ....++..|+++|+++ ||.+..-||.=|+..
T Consensus 316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WS-P~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSFDEYKSELRSGRLEWS-PVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhCCcCCC-ccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 11 12222 221111 1146788899999765 588899999999999
Q ss_pred ccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 272 SDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 272 ~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
..+.++....+.+.|+=+.++.++.++++.|+-+|+.++..+..+
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 999888888888899999999999999999999999998877543
No 59
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.1e-06 Score=78.74 Aligned_cols=288 Identities=18% Similarity=0.266 Sum_probs=210.5
Q ss_pred cCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCC------CCc---------HHHHH-HcCCHHHHHHhhcCCCChHHH
Q 016714 74 ESIPSMVQGVWS--EDPALQLEATTQFRKLLSIER------SPP---------IDEVI-KAGVVPRFVEFLGRHDMPQLQ 135 (384)
Q Consensus 74 ~~l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~------~~~---------~~~~~-~~g~i~~Lv~lL~~~~~~~~~ 135 (384)
.+++.++..|+. .|++..-.++..+..+++.+. ++. .+.++ ..+.|..++.++...| -.+|
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D-F~VR 139 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD-FHVR 139 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc-hhhh
Confidence 467889998884 468888888999988887652 111 12233 4588999999999888 7999
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc
Q 016714 136 FEAAWALTNVASG-TSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE 213 (384)
Q Consensus 136 ~~a~~~L~nl~~~-~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~ 213 (384)
..+...|+++.+. ..+.++.+.. .-+|..++.+|.+..+.+|..++..|..+..+++.++..+.=.+++..|+.++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999997664 3455555554 4589999999999999999999999999999999999988888899999999964
Q ss_pred cc--hh-HHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhcc---CCHh----------HHHHHHHHHHHhccCCh
Q 016714 214 HS--KL-SMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHL---NDEE----------VLTDACWALSYLSDGPN 276 (384)
Q Consensus 214 ~~--~~-~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~---~~~~----------i~~~a~~~l~~l~~~~~ 276 (384)
.+ |- -+...++..|-||..+. .+..+-.-.+.+|.|.++|.. .|.+ -...++.++..+..-+.
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 43 33 37788999999999886 334444447899999988743 2311 23445555655554211
Q ss_pred ------HHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHc---------CchH-HHHHHhc
Q 016714 277 ------DKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDN---------GVLP-CLYQLLT 338 (384)
Q Consensus 277 ------~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---------g~l~-~L~~ll~ 338 (384)
.+...+.+.+++..|..++.++ ..+|+..++.++++++.++......+.+. ..+- .++.+..
T Consensus 300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~n 379 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFN 379 (970)
T ss_pred cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHh
Confidence 2223567889999999999887 35788999999999999988776666542 1122 2333334
Q ss_pred cCCchhHHHHHHHHHHHHhcCCHH
Q 016714 339 QNHKKSIKKEACWTISNITAGNRA 362 (384)
Q Consensus 339 ~~~~~~v~~~a~~~L~nl~~~~~~ 362 (384)
+...+..|-.+.+++..+...+.+
T Consensus 380 e~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 380 EKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred ccCCchHHHHHHHHHHHHHhcchh
Confidence 443678888888888888864433
No 60
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.56 E-value=1.7e-07 Score=57.08 Aligned_cols=41 Identities=29% Similarity=0.596 Sum_probs=37.8
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++++.+.+++.|++|.|+.+|.++ ++.++++|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 367788999999999999999988 99999999999999985
No 61
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.55 E-value=1.4e-07 Score=57.42 Aligned_cols=41 Identities=44% Similarity=0.817 Sum_probs=38.4
Q ss_pred CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG 189 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 189 (384)
+++++..+++.|++|.|+.+|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 62
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.53 E-value=3e-05 Score=71.51 Aligned_cols=274 Identities=17% Similarity=0.179 Sum_probs=180.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
+.+...+-+++.+++..|.+.+|.++.. ......+.+.++--.++.-|..++ +..-+++|+..+..+..-.. ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444455566699999999999988874 567888888887777777776543 35567889888887766311 121
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
.+..|++..++.+..++++.++..|+.+|+.++-.+| +.+..+|++..|++.+.+ ...++...+++++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 2345788999999999999999999999999998888 568899999999999955 444488888999988888743
Q ss_pred CCChhhhhchHHHHHHhh-cc------CCH--hHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcCCCChhhHHH
Q 016714 236 PTPFEQVKPALPILQRLI-HL------NDE--EVLTDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLMHPSATVLIP 305 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL-~~------~~~--~i~~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~~~~~~v~~~ 305 (384)
...+.....-++.+..-+ .. ++. +....+..++..+...-+.....-.+. ..+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 222222111222222211 11 222 355556666666555433322111111 35666666666666666665
Q ss_pred HHHHHHHhh-------------------cC-------------------------Ch----HH----HHHHHHcCchHHH
Q 016714 306 ALRTVGNIV-------------------TG-------------------------DD----AQ----TQFVIDNGVLPCL 333 (384)
Q Consensus 306 a~~~l~nl~-------------------~~-------------------------~~----~~----~~~i~~~g~l~~L 333 (384)
.+-++..+. .+ .. .. ...++++|+++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 555554432 00 00 00 1234588999999
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhc
Q 016714 334 YQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
..++...+++.+...|...|+.+..
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHH
Confidence 9999988678899999998887753
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.52 E-value=3.7e-05 Score=71.78 Aligned_cols=219 Identities=20% Similarity=0.094 Sum_probs=154.1
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 75 SIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 75 ~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
.++.++..+. .++.++...++..+. ..+ .+ ..+..|+..|.+++ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566777774 455666555554443 221 11 13888999998887 8899999999986643
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+.+.|+.+|.+.++.++..++.+++..-. ...+.+...| .+.++.+...++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2567889999999999999988888777321 1345788888 688899999999999888764
Q ss_pred CCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH------------------c----CChHHH
Q 016714 234 KPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE------------------A----GVCPRL 291 (384)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~------------------~----g~~~~L 291 (384)
..+|.|...+.+.|+.++..++++++.+-. +.....+.. . ..++.|
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L 245 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL 245 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence 456677888999999999999999877743 211111111 1 234445
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
..++.++. ++..++.++|.+-. ...++.|+..+... .++..|.++++.|+.
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD-----------VEAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC-----------cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 55555433 67778888876543 34677788888765 399999999999997
No 64
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.50 E-value=3.1e-05 Score=73.57 Aligned_cols=268 Identities=16% Similarity=0.154 Sum_probs=178.7
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHH
Q 016714 95 TTQFRKLLSIERSPPIDEVIKAGVVPRFVEFL---------GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMF 165 (384)
Q Consensus 95 ~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L 165 (384)
+.+|+ +++.+ ....+.++...++..|..+- ....++.+..+|++||+|+...++..+..+++.|..+.+
T Consensus 2 L~~LR-iLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLR-ILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHH-HHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 34444 44554 44555666666677776665 233348999999999999999999999999999999999
Q ss_pred HHhhcCC-----CHHHHHHHHHHHHhhhCCCCchhhHHHh-cCChHHHHHHhccc----------------chhHHHHHH
Q 016714 166 VQLLSSG-----SDDVREQAVWALGNVAGDSPSCRDLVLS-SGALMPLLAQLNEH----------------SKLSMLRNA 223 (384)
Q Consensus 166 ~~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~~l~~~----------------~~~~~~~~a 223 (384)
+..|+.. +.++.-.....|.-++...+..+..+.+ .+++..++..|..+ .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999875 7788888888888888777666655554 46777777766311 144567788
Q ss_pred HHHHhhhhcCCCCCChhhh----hchHHHHHHhh---cc--CCHhHHHHHHHHHHHhccCChHHH-----------HHHH
Q 016714 224 TWTLSNFCRGKPPTPFEQV----KPALPILQRLI---HL--NDEEVLTDACWALSYLSDGPNDKI-----------QAVI 283 (384)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL---~~--~~~~i~~~a~~~l~~l~~~~~~~~-----------~~~~ 283 (384)
+.++.|+....+....... ..+++.+..++ .. +.......+..+|.++--...... ....
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8999999887644332222 44444455442 11 124567778888887732211110 0011
Q ss_pred HcCChHHHHHhcCC-----C---ChhhHHHHHHHHHHhhcCChHHHHHHHH----------------cCchHHHHHHhcc
Q 016714 284 EAGVCPRLVELLMH-----P---SATVLIPALRTVGNIVTGDDAQTQFVID----------------NGVLPCLYQLLTQ 339 (384)
Q Consensus 284 ~~g~~~~L~~lL~~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~i~~----------------~g~l~~L~~ll~~ 339 (384)
....+..|+.+|.. . -.....+.+.+|.+++.........+.. ..+-..|++++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 22346666666632 1 1356788999999999877655554432 2567789999999
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714 340 NHKKSIKKEACWTISNITAGNRAQIQ 365 (384)
Q Consensus 340 ~~~~~v~~~a~~~L~nl~~~~~~~i~ 365 (384)
. .+.++..++-.+..+|..+....-
T Consensus 320 ~-~~~~k~~vaellf~Lc~~d~~~~v 344 (446)
T PF10165_consen 320 P-DPQLKDAVAELLFVLCKEDASRFV 344 (446)
T ss_pred C-CchHHHHHHHHHHHHHhhhHHHHH
Confidence 9 599999998888888875555433
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.50 E-value=1.5e-05 Score=74.45 Aligned_cols=273 Identities=13% Similarity=0.164 Sum_probs=167.3
Q ss_pred cCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714 74 ESIPSMVQGVWS-------EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA 146 (384)
Q Consensus 74 ~~l~~lv~~l~s-------~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~ 146 (384)
+.+|.++++|.. ++...-..|..+|.-+.... . +.+.+. ++..+=+-+.+++ ..-++.|+.+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~-g---d~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK-G---DKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh-h---hHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 468999999874 23445566666665443211 1 111111 2222333345556 677899999999998
Q ss_pred cCCch-hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--cchhHHHHHH
Q 016714 147 SGTSE-HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--HSKLSMLRNA 223 (384)
Q Consensus 147 ~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a 223 (384)
.+..+ ++..++ ..++|.+...+.++..-+++.++||+|.|+.+-+ +.+-.+|.+++.+..... ..++.+..++
T Consensus 395 ~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 395 HGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred cCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 87544 444455 4789999999998889999999999999986533 445556666666654422 2356778899
Q ss_pred HHHHhhhhcCCCCCC---hhhhhchHHHHHHhh-c-----cCCHhHHHHHHHHHHHhccCChHHHHHH------------
Q 016714 224 TWTLSNFCRGKPPTP---FEQVKPALPILQRLI-H-----LNDEEVLTDACWALSYLSDGPNDKIQAV------------ 282 (384)
Q Consensus 224 ~~~L~~L~~~~~~~~---~~~~~~~~~~L~~lL-~-----~~~~~i~~~a~~~l~~l~~~~~~~~~~~------------ 282 (384)
+|...||..+-+... ...+.+..+.++.-| + .++...+..+..+|+.|....++....+
T Consensus 471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 999999998753222 122233333333222 1 2334455555555555544322211111
Q ss_pred -------------------------------------------HHcCChHHHHHhcCCCCh-hhHHHHHHHHHHhhcCCh
Q 016714 283 -------------------------------------------IEAGVCPRLVELLMHPSA-TVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 283 -------------------------------------------~~~g~~~~L~~lL~~~~~-~v~~~a~~~l~nl~~~~~ 318 (384)
++..++..++++|.+.++ .+-...+.+|++++..-.
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
Confidence 111234455555555433 344567888888887655
Q ss_pred HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 319 ~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++..... ..++|+|.+-|... +..+...|...++.++.
T Consensus 631 e~Fe~y~-~~fiPyl~~aln~~-d~~v~~~avglvgdlan 668 (858)
T COG5215 631 ERFEQYA-SKFIPYLTRALNCT-DRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HHHHHHH-hhhhHHHHHHhcch-hHHHHHHHHHHHHHHHH
Confidence 5554333 46899999999777 78888889999988885
No 66
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=3.3e-06 Score=78.04 Aligned_cols=242 Identities=13% Similarity=0.177 Sum_probs=171.7
Q ss_pred HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC
Q 016714 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (384)
.+.+..+.+.|+++|+.++ ..+..-+...++|..-.-+.-+..+++.|++..|+.++.+.+..++....|+|..+..++
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3557788999999999987 677888888899988777778888999999999999999999999999999999998655
Q ss_pred Cc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-C-CCChhhh------hchHHHHHHhhccCCHhHHH
Q 016714 192 PS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-P-PTPFEQV------KPALPILQRLIHLNDEEVLT 262 (384)
Q Consensus 192 ~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~-~~~~~~~------~~~~~~L~~lL~~~~~~i~~ 262 (384)
.. .+-..+..-++..++++. .+++-.++..++..|.|+.-+. . +...... .-++..|.+.+...+|--..
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 43 333455666788899988 7888889999999999998743 2 1222221 22445566666777766666
Q ss_pred HHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcC---------------------------------------------
Q 016714 263 DACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLM--------------------------------------------- 296 (384)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~--------------------------------------------- 296 (384)
..|..|.+++..+++..+.+.+. ..+..+.++|.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~ 663 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL 663 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence 66888877776665544443322 22222222221
Q ss_pred --------CCChhhHHHHHHHHHHhhcC---Ch------HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 297 --------HPSATVLIPALRTVGNIVTG---DD------AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 297 --------~~~~~v~~~a~~~l~nl~~~---~~------~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
.++.+...+..|.+-|+.-. .. +..+.+.+.|+-+.+.++..++ ++.+|+.+--+|.|+
T Consensus 664 D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~-Sl~vrek~~taL~~l 739 (743)
T COG5369 664 DNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD-SLIVREKIGTALENL 739 (743)
T ss_pred cccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC-cHHHHHHHHHHHHhh
Confidence 01223455666777665421 11 5556677788888888888887 889999998888876
No 67
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.45 E-value=6.8e-06 Score=76.60 Aligned_cols=265 Identities=16% Similarity=0.086 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714 87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV 166 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 166 (384)
+..+++.|+.+|.+-+-.-+.....+--..-++...++.-+.++ .+++..|..||..|..-+....+...+.-......
T Consensus 191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~ 269 (858)
T COG5215 191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG 269 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778777776221100000000001123445555656666 89999999999999887777777777766667777
Q ss_pred HhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH----------------HhcCChHHHHHHhcc-c-----chhHHHHHHH
Q 016714 167 QLLSSGSDDVREQAVWALGNVAGDSPSCRDLV----------------LSSGALMPLLAQLNE-H-----SKLSMLRNAT 224 (384)
Q Consensus 167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i----------------~~~g~i~~L~~~l~~-~-----~~~~~~~~a~ 224 (384)
..++++++++..+|+...+.+|.+.-...-.+ .-.+++|.|+++|.. + .+..+-..+.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 88999999999999988888875321110000 012367888888854 1 1334555555
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHH
Q 016714 225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304 (384)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~ 304 (384)
.+|--++....+ ..+.+++..+-+-+++++..-+..+.-+++.+..++.+....-+-+..+|.+...+.++.--++.
T Consensus 350 sCLqlfaq~~gd---~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 350 SCLQLFAQLKGD---KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHHHHhhh---HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 566555544322 23355666666778899999999999999999888664333223346678888888877788899
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc--cCCchhHHHHHHHHHHHHhc
Q 016714 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT--QNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~ 358 (384)
.++||+|.|+.+-+..+.. +|-++..+.... -.+.+.+...++|..-|++.
T Consensus 427 ttAwc~g~iad~va~~i~p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 427 TTAWCFGAIADHVAMIISP---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred HHHHHHHHHHHHHHHhcCc---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 9999999998644332221 232222222111 11246788899999999985
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.8e-05 Score=68.54 Aligned_cols=242 Identities=17% Similarity=0.123 Sum_probs=153.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI--EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
...++.+|.+.+ |.++..|...+.+++.. ..+.+. +.-.++.+.+++....+ .+.|+.+|.|++.+.. .+.
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 345889999988 99999999999998875 222222 23467888999887666 7889999999998775 666
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-------hchHHHHHHhhccCCH--hHHHHHHHH
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-------KPALPILQRLIHLNDE--EVLTDACWA 267 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-------~~~~~~L~~lL~~~~~--~i~~~a~~~ 267 (384)
.+++. .+..++..+ .++...+....|.+|+||++.......... .+.+.....+.+++-. .-..+....
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 66665 555566666 444456778899999999997532211111 2333344444443321 335667777
Q ss_pred HHHhccCChHHHHHHHHcC-C-hHHHHHhcCCCChhhHH-HHHHHHHHhhcCChHHHHHHH-HcCchHHHHHHhccC---
Q 016714 268 LSYLSDGPNDKIQAVIEAG-V-CPRLVELLMHPSATVLI-PALRTVGNIVTGDDAQTQFVI-DNGVLPCLYQLLTQN--- 340 (384)
Q Consensus 268 l~~l~~~~~~~~~~~~~~g-~-~~~L~~lL~~~~~~v~~-~a~~~l~nl~~~~~~~~~~i~-~~g~l~~L~~ll~~~--- 340 (384)
+++++.....+.- +.+.. + ...+..+ .+.+..++. -.+.+|-|+|.....+-..+- ..+++|.++--+..+
T Consensus 156 f~nls~~~~gR~l-~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKL-LLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhH-hcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCcccc
Confidence 8888876655442 33322 2 2233333 334555554 488899999886655543222 123455444322221
Q ss_pred ----------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 341 ----------------------HKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 341 ----------------------~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
.++.+|+.-.-+|.-+++ +..-.+.+.+.|+
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgv 286 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGV 286 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCc
Confidence 267899998889988888 4444677888887
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00012 Score=70.35 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=157.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
-+.++.+|.++-+-++..|+-.+.++.-.- ++..+ ..+|.|++-|.++| |.++-.|..+++.+|..+|.+--
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 366677777888888888887777765432 22222 35889999999888 89999999999999987776432
Q ss_pred HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh--hhc
Q 016714 156 VIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN--FCR 232 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~--L~~ 232 (384)
..-|.+.++|.. .+-=+....+..+++|+--.|... ...+++|.+++.+..-..++..+..++.. ++.
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 345777777754 444456667777888876666432 34688999999555555666666666543 333
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
+. ......+.-++..|-.++..+|+.+..-++.|++.+....+..++.. -+.+++.|.+.++.++..|+..+.-
T Consensus 289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence 31 23345557788899999999999999999999999998777555432 4678899999999999999999988
Q ss_pred hhcC
Q 016714 313 IVTG 316 (384)
Q Consensus 313 l~~~ 316 (384)
++..
T Consensus 363 mVsk 366 (877)
T KOG1059|consen 363 MVSK 366 (877)
T ss_pred Hhhh
Confidence 8763
No 70
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.38 E-value=4.3e-06 Score=63.31 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=100.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
+.+..|+.-.....+.+-++...--|.|.+.+ +.+-..+.+.++++.++..|..+++.+++.++..|+|+|.+.. +..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 45667777665544488999999999999985 8888899999999999999999999999999999999998876 667
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
.+.+.++++.++..+ +++...+...++.++..|+.+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt 132 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERT 132 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccc
Confidence 889999999999998 777777888899999999987533
No 71
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.37 E-value=6.3e-05 Score=69.27 Aligned_cols=230 Identities=27% Similarity=0.337 Sum_probs=162.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.+++.+.+.++.++..+++.+..+-.. -.+|.+..+|.+.+ +.++..|+.+|+.+-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------ 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence 678889999999999999999887755332 26999999999998 89999999999887542
Q ss_pred HHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccch-----------hHHHHH
Q 016714 155 VVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSK-----------LSMLRN 222 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~-----------~~~~~~ 222 (384)
.+++.|+.++. +++..++..+.++|+.+-... .+.+++..+..... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 46899999998 599999999999999984221 36777887743221 123444
Q ss_pred HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhh
Q 016714 223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302 (384)
Q Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v 302 (384)
+...|..+-. ...++.+..++...+..++..+..+++.+.... ..+.+.+...+.+++..+
T Consensus 169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 4444444433 245678888898888999999999999987654 344678888889999999
Q ss_pred HHHHHHHHHHhhcCChHHH--HHHHH------------------cCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 303 LIPALRTVGNIVTGDDAQT--QFVID------------------NGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~--~~i~~------------------~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
+..++..+|.+-....... ..+.+ ......+...+.+. ...++..+++.+.-+...
T Consensus 230 r~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 230 RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDE-ANAVRLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhhcc-hhhHHHHHHHHHHhhccc
Confidence 9999999988754322111 11110 01133344444444 566777777777766653
No 72
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.33 E-value=3.5e-05 Score=67.04 Aligned_cols=224 Identities=16% Similarity=0.178 Sum_probs=152.5
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHh-cCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHh-cCChHHH
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIE-HGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLS-SGALMPL 207 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L 207 (384)
+-.+.-|..|+.++... ++.|..... ..+-..++.++++ ....++-+.+.+++-+.-... +.+.+-+ ...+.-|
T Consensus 163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence 55678899999999885 677766554 3455677888876 457788888888888875543 3322221 1245566
Q ss_pred HHHhcccchhHHHHHHHHHHhhhhcCCCCCCh--hhhhc-hHHHHHHhh--ccCCHhHHHHHHHHHHHhccC--------
Q 016714 208 LAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF--EQVKP-ALPILQRLI--HLNDEEVLTDACWALSYLSDG-------- 274 (384)
Q Consensus 208 ~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~-~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~-------- 274 (384)
+.+........+.+-++..+.|++...|.... ....+ +.|..-.++ ...|++++.+.-.+=+.|-..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 67775666788999999999999995433221 12233 333333333 234666665544333222210
Q ss_pred ----------------------ChHHHHHHHHc--CChHHHHHhcCCCChh-hHHHHHHHHHHhhcCChHHHHHHHHcCc
Q 016714 275 ----------------------PNDKIQAVIEA--GVCPRLVELLMHPSAT-VLIPALRTVGNIVTGDDAQTQFVIDNGV 329 (384)
Q Consensus 275 ----------------------~~~~~~~~~~~--g~~~~L~~lL~~~~~~-v~~~a~~~l~nl~~~~~~~~~~i~~~g~ 329 (384)
-..+.+.+.+. .++..|.++|+++.+. ...-||.-++.++...|+....+.+.|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 01223333333 5688899999887766 5677999999999999999999999999
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 330 LPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 330 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
-..++.+++++ +++++=+|..++.-+..
T Consensus 401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 401 KEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 99999999999 99999999988876653
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.32 E-value=1.9e-05 Score=71.99 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=140.5
Q ss_pred HHHHHHcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhh
Q 016714 110 IDEVIKAGVVPRFVEFLGRHDM-PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNV 187 (384)
Q Consensus 110 ~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl 187 (384)
.+.+...|++..|+.++..++. ..++.+|++.|..+.. .++++.+...| +..++.+-+ .+.+++....+..|+++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3456677999999999998772 4679999999999877 78888888877 444444444 36688999999999999
Q ss_pred hCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC-CChhhh-hchHHHHHHhhccCCHhHHHHHH
Q 016714 188 AGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-TPFEQV-KPALPILQRLIHLNDEEVLTDAC 265 (384)
Q Consensus 188 ~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~ 265 (384)
..++.+....+++.|+++.++--. ...++.++++++.+|.|+.-+... .....+ ..+-+-|..+-.+.|+-.+.+||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988888889999999988887 667799999999999999887522 222233 34444566666677888899999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714 266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300 (384)
Q Consensus 266 ~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~ 300 (384)
-+++.++...+- ...+..+|.+..+-.++.+.++
T Consensus 329 lAV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 329 LAVAVLATNKEV-EREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred HHHhhhhhhhhh-hHHHhhccchhhhhhhhhccCc
Confidence 999999876542 3345666776666666655554
No 74
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.31 E-value=1.9e-05 Score=59.94 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=109.8
Q ss_pred hcCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 73 LESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 73 ~~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
++-+..++...+ ..+.+.+.+.+..|.+++-. +-+...+.+..++..++..|..++ ..+...+...|+|+|.+ +.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~~ 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-KT 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-hH
Confidence 455677777666 45677888888889988753 566777889999999999999998 89999999999999995 88
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714 152 HTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL 211 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l 211 (384)
+.+.+++.+++|.++..++++.......++.++..++-.....++.+.. ++.++.+
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 8999999999999999999999999999999999999777667777655 4445544
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=6.6e-06 Score=76.14 Aligned_cols=201 Identities=12% Similarity=0.081 Sum_probs=147.6
Q ss_pred HHHHHHHHH--HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc
Q 016714 136 FEAAWALTN--VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE 213 (384)
Q Consensus 136 ~~a~~~L~n--l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~ 213 (384)
.-++|++.- ++..-..-|.-+.+..+.+.|+++|++++..+.-.+...++|+...-...+..+++.|++..|++++ .
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-M 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-h
Confidence 335555544 4333233444455677889999999998888888889999999887777899999999999999999 5
Q ss_pred cchhHHHHHHHHHHhhhhcCC-CCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH---HHHHHHHc---
Q 016714 214 HSKLSMLRNATWTLSNFCRGK-PPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPND---KIQAVIEA--- 285 (384)
Q Consensus 214 ~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~---~~~~~~~~--- 285 (384)
+.|..++.+..|.+..+..+. .+..+... .-++..++.+...++..++..++..+.|++..... ..+.+++.
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 667889999999999999886 33344444 66788899999999999999999999999874322 22222221
Q ss_pred -CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc-CchHHHHHHh
Q 016714 286 -GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN-GVLPCLYQLL 337 (384)
Q Consensus 286 -g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~-g~l~~L~~ll 337 (384)
-+.+.|++-+...+|-...+.+.+|.++++.++...+.++.. .++..+..+|
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 145666777777888888888999999998877666555432 3444444443
No 76
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.26 E-value=3.1e-06 Score=61.34 Aligned_cols=87 Identities=29% Similarity=0.454 Sum_probs=69.8
Q ss_pred HHHHHHhh-cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 119 VPRFVEFL-GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 119 i~~Lv~lL-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
||.|++.| ++++ +.++..++++|+.+.. + .+++.|+.++.++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 68899999 6666 9999999999995532 1 45899999999999999999999999983
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 228 (384)
....++.|.+++.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378889999966666667888888774
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00033 Score=68.20 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=67.5
Q ss_pred hHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714 245 ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV 324 (384)
Q Consensus 245 ~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 324 (384)
++..|-++|.+.|..++.-++..|.+....++..++. + =..+++.|++++..++..|+..+..++..+ ....+
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m 386 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKDPDVSIKRRALELSYALVNES--NVRVM 386 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH
Confidence 3455566666667777777777777766665543332 1 256788889999999999999888887533 23332
Q ss_pred HHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 325 IDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+..|+..|.+. +++.+...+.-+..++.
T Consensus 387 -----v~eLl~fL~~~-d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 387 -----VKELLEFLESS-DEDFKADIASKIAELAE 414 (866)
T ss_pred -----HHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 34577777777 77777777766666664
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=98.24 E-value=8.4e-05 Score=72.20 Aligned_cols=235 Identities=17% Similarity=0.124 Sum_probs=162.1
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPP--IDEVIKAGVVPRFVEFLGRHD------MPQLQFEAAWALTNV 145 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~nl 145 (384)
..+.+.+++|++.+.+.++.++-.+.+++..++... .+.+.++=+.+.+-.+|.++. ....+..|..+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 357888999999988888889999999987642112 234777767888888887622 256778888899988
Q ss_pred hcCCchhH--HHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHH
Q 016714 146 ASGTSEHT--RVVIEHGAVPMFVQLLSSGSD-DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRN 222 (384)
Q Consensus 146 ~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~ 222 (384)
+.. ++.. ..++ +-||.|+..+.+.+. .+...|+.+|..++... .-+..+++.|+++.|.+.+.+ .......
T Consensus 85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~ 158 (543)
T PF05536_consen 85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQMEI 158 (543)
T ss_pred cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence 884 4433 3333 579999999988766 99999999999999544 467888999999999999954 4445667
Q ss_pred HHHHHhhhhcCCCC----CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH-HHHHHHcCC----hHHHHH
Q 016714 223 ATWTLSNFCRGKPP----TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK-IQAVIEAGV----CPRLVE 293 (384)
Q Consensus 223 a~~~L~~L~~~~~~----~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~-~~~~~~~g~----~~~L~~ 293 (384)
++.++.+++..... ........+++.+...+...........|..|+.+....+.. ........+ ...+..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 77777777765321 112223456667777777767777788888888887665311 111122233 344444
Q ss_pred hcCC-CChhhHHHHHHHHHHhh
Q 016714 294 LLMH-PSATVLIPALRTVGNIV 314 (384)
Q Consensus 294 lL~~-~~~~v~~~a~~~l~nl~ 314 (384)
+|.+ ..+.-+.+++...+.+.
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 5544 35566777777777765
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0002 Score=68.83 Aligned_cols=218 Identities=15% Similarity=0.122 Sum_probs=159.5
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
+-+-++.+|+++. |-++..|..++..+....++... .++|.|..-|.++++.|+..|+.+++.||..+|...-
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 4566778888877 78888888888888775555332 4689999999999999999999999999998886422
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC-HhHHHHHHHHHH--HhccC
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND-EEVLTDACWALS--YLSDG 274 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~--~l~~~ 274 (384)
..-|.+.++|..+.+--++...+..+.+|+--.| .....++|.|..++++.. ..++.++..++. +++.+
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1456777888666666677777888888876544 233577888888888765 456666666652 44444
Q ss_pred ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714 275 PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354 (384)
Q Consensus 275 ~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 354 (384)
.++....+ .-++..|-.++.+.++.++--++.+++-|....+...+. --+.+++.|.+. ++.+|-.|.-.|.
T Consensus 290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 22221111 124677777888999999999999999999877765543 245678889888 8999999988888
Q ss_pred HHhc
Q 016714 355 NITA 358 (384)
Q Consensus 355 nl~~ 358 (384)
-|+.
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 8875
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.21 E-value=1.9e-05 Score=68.40 Aligned_cols=189 Identities=16% Similarity=0.120 Sum_probs=119.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHHc--CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 016714 84 WSEDPALQLEATTQFRKLLSIE-RSPPIDEVIKA--GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 160 (384)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~--g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g 160 (384)
.+.+++.+..|+..|+.++.+. .......+.+. .+++.+...+.+.. ..+...|+.++..++..-........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 5678999999999999998764 12333333321 56677777777766 789999999999998754444444443 5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC--CCC
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PTP 238 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~--~~~ 238 (384)
.+|.|+..+.+.+..+++.|..+|..++...+.. .. .+..++.....+.++.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~-----~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-PK-----ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---H-----HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-HH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 7899999999999999999999999998765511 11 213333333377888898888888888776654 111
Q ss_pred hh---hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHH
Q 016714 239 FE---QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQ 280 (384)
Q Consensus 239 ~~---~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~ 280 (384)
.. ....+++.+.+++...+++++..|-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 11 2356888999999999999999999999888655444433
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.19 E-value=4.9e-05 Score=76.74 Aligned_cols=261 Identities=14% Similarity=0.121 Sum_probs=167.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHH-HHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDE-VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH 152 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~-~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~ 152 (384)
.+|.++.++.++...+|..|+.+|..++..-+ -++.+. +.-.-++|.|-.++.+.+...++..-|.+|+.+|..-.
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~-- 540 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY-- 540 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--
Confidence 57999999999999999999999999886432 233333 44556789999998874436777777888888876311
Q ss_pred HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 153 TRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
.+.+.+--.....++.+++.+ ...+ .........+.+ .+..++.-|..++++-+++..+..|.-||.
T Consensus 541 --rFle~~q~~~~~g~~n~~nse-------t~~~--~~~~~~~~~L~~--~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~ 607 (1431)
T KOG1240|consen 541 --RFLELTQELRQAGMLNDPNSE-------TAPE--QNYNTELQALHH--TVEQMVSSLLSDSPPIVKRALLESIIPLCV 607 (1431)
T ss_pred --HHHHHHHHHHhcccccCcccc-------cccc--cccchHHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 122211111112223333322 0000 001111111211 344444444366666777888878888886
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
--. ......-+++.|..+|...|+.++..-...|..++..-.-+ -++.+++|.|.+-|.++.+.|...|+.++.-
T Consensus 608 FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~ 682 (1431)
T KOG1240|consen 608 FFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTDGEEAVIVSALGSLSI 682 (1431)
T ss_pred Hhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccCcchhhHHHHHHHHHH
Confidence 421 11112347788999999999999988888888776542211 1455778999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++...--....++ .+++....+|.++ +..||..++..+..++.
T Consensus 683 Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 683 LIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 8864322222222 3567778888999 89999999999888775
No 82
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.18 E-value=8.7e-05 Score=68.37 Aligned_cols=188 Identities=26% Similarity=0.334 Sum_probs=141.8
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
..++.+++++.+.+ ..++..+++.++.+.. .-+++.+..++.+.++.++..++.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h----
Confidence 46888999999887 8999999999887754 2478999999999999999999999998731 1
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCH------------hHHHHH
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDE------------EVLTDA 264 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~------------~i~~~a 264 (384)
..+++|+..+..+.+..++..+.++|..+-.. ..++.++..+..... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 25788999995578888999999999887764 225555566655442 244444
Q ss_pred HHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchh
Q 016714 265 CWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKS 344 (384)
Q Consensus 265 ~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~ 344 (384)
..+++.+- ....++.+...+.+.+..++..|..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 44444432 2234678888899888899999999999998754 23456677778777 788
Q ss_pred HHHHHHHHHHHHhc
Q 016714 345 IKKEACWTISNITA 358 (384)
Q Consensus 345 v~~~a~~~L~nl~~ 358 (384)
+|..++.+++.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 88888888877764
No 83
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.17 E-value=2.1e-05 Score=75.55 Aligned_cols=234 Identities=16% Similarity=0.164 Sum_probs=147.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCCchhH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM-PQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
.+.+++..++++.++.+.-++....++.+.-....++.-.+.-++..++-.++..+. ..+-.....++.|-..+ ..+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~k 794 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVK 794 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccc
Confidence 356667777777777777777777766654323333333344445555555544331 22333333333332221 001
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch--hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC--RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
. .. ..++..++..|++.++.++++|+-.++.++.--..+ -..+...|. .|.+.| ....++++...+.++..++
T Consensus 795 p-yl-pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 795 P-YL-PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred c-ch-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence 1 11 124566778889999999999999999987321111 122233332 356666 6667888888887777766
Q ss_pred cCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 232 RGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
... -.....-+.+++|.|...|.+....++.++...++.+++..++.+..--=..+.=-|+++|...+..++..|..++
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 543 1222334578999999999999999999999999999998776443211113445577778888899999999999
Q ss_pred HHhhc
Q 016714 311 GNIVT 315 (384)
Q Consensus 311 ~nl~~ 315 (384)
|.|+.
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 99974
No 84
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.17 E-value=5.3e-06 Score=60.07 Aligned_cols=87 Identities=29% Similarity=0.447 Sum_probs=70.6
Q ss_pred HHHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714 246 LPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV 324 (384)
Q Consensus 246 ~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i 324 (384)
+|.|++.| .++++.++..++++|+.+- .. .+++.|..++.++++.++..|+++||.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 8889999999999999652 11 34789999999999999999999999883
Q ss_pred HHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714 325 IDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354 (384)
Q Consensus 325 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 354 (384)
+...++.|.+++.++++..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12377889999988756677999999885
No 85
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00081 Score=67.45 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHH-----HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 016714 90 LQLEATTQFRKLLSIERSPPIDEVI-----KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPM 164 (384)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~~~~-----~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~ 164 (384)
-..-++.+|+++++.. |....++ --|.++.++.+|.....+.++..|+.++.-+++ +.++...+...|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 4455889999999864 4333322 347888899988765448999999999977776 6899999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
|+.+|.+ -+..++.++.+|+.+++..+ .....++.|++..+..++....++..+..++..+..|...+
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 9999987 47789999999999998776 44556788999999999877778888888888888888765
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.16 E-value=0.00025 Score=66.27 Aligned_cols=199 Identities=19% Similarity=0.067 Sum_probs=139.6
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
.++.++..|....++.+...+++++..... + .++..|+..|.+.++.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------
Confidence 578888889543337888877776642211 1 138899999999999999999999997621
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND 277 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~ 277 (384)
....+.|+..+ .+.++.++..++.++.... ....+.+..+|.+.|+.++..++++++++-..
T Consensus 116 ---~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 116 ---RQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ---hHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 12456788888 7778888888886666521 12356788889999999999999999998542
Q ss_pred HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH------------------HHc----CchHHHHH
Q 016714 278 KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFV------------------IDN----GVLPCLYQ 335 (384)
Q Consensus 278 ~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i------------------~~~----g~l~~L~~ 335 (384)
..++.|...+.+.++.|+..|+..++.+-. +.....+ +.. ..++.|..
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 345667788999999999999999887732 2111111 111 34555666
Q ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 336 LLTQNHKKSIKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 336 ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
++..+ .++..++++++.+. ++..+..++
T Consensus 248 ll~d~---~vr~~a~~AlG~lg--~p~av~~L~ 275 (410)
T TIGR02270 248 LLQAA---ATRREALRAVGLVG--DVEAAPWCL 275 (410)
T ss_pred HhcCh---hhHHHHHHHHHHcC--CcchHHHHH
Confidence 66554 48999999999765 444444444
No 87
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.15 E-value=0.00017 Score=71.34 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=165.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
.+++.+.++|-+.++-|+.-|.+-+... ....+.=-+..++..++++|++.+ .++|..|..|++-+++.-.+.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence 6788888999999999998887766543 222333334567899999999988 9999999999999986422221 1
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHH----HHHHhcccch-hHHHHHHHHHHhhhhc
Q 016714 158 EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMP----LLAQLNEHSK-LSMLRNATWTLSNFCR 232 (384)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~----L~~~l~~~~~-~~~~~~a~~~L~~L~~ 232 (384)
+ ..+..|+.-+-++....+..+.-.|-....+-+......+...+.+. +...+....+ ..++-.++-.+..+..
T Consensus 84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1 23455665544444555554444443333222211122222233334 4444322222 2244444444443333
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-ChhhHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-SATVLIPALRTVG 311 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~~~v~~~a~~~l~ 311 (384)
.....-.....+++..+...|+++-..++..++.+|+.++...+...- .+++..|++-|..+ ++.....-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly----~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY----VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 222211123456667777778888899999999999999876553321 24566777777543 4444555667777
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLL---TQNHKKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
.++.........-. ..++|.+.+.. +.. +.++|+...-++.-+....|..+-..
T Consensus 239 ~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~ 295 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPH 295 (1233)
T ss_pred HHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhccc
Confidence 77643322221111 14677777777 555 78899999888888887665554443
No 88
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.15 E-value=4.5e-06 Score=54.47 Aligned_cols=55 Identities=38% Similarity=0.699 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 187 (384)
|.+|..|+|+|++++...++....... .+++.|+.+|.++++.|+..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568999999999998877776666544 6899999999999999999999999986
No 89
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.11 E-value=0.00011 Score=69.44 Aligned_cols=258 Identities=19% Similarity=0.226 Sum_probs=165.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLL---SIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~---s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+..++..|++..+.++..|+.....++ +.. .....+...|. .|.+.|.... |++.--.+.++..|.+. ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c--~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~ 678 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC--GETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSV-HR 678 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc--chHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhh-hc
Confidence 3566677888999999999887665443 321 11233334443 3566676666 77765555555555431 11
Q ss_pred hHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch---hhHHHhcCChHHHHHHhcccchhHHHHHHHHHH
Q 016714 152 HTRV-VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC---RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL 227 (384)
Q Consensus 152 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 227 (384)
.+.. ---.|++|.|..+|++.+.+++...+..++.||..+|++ |+.+. +--.|++.| .+-+.+++++|..++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tf 754 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETF 754 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhh
Confidence 1100 012489999999999999999999999999999877753 22221 233567777 566789999999999
Q ss_pred hhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHH
Q 016714 228 SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPAL 307 (384)
Q Consensus 228 ~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~ 307 (384)
..+++.-.. +.++..|+.-|...+-..+....-+|+-.+..+.. ..++|.|+.--..++..++.-.+
T Consensus 755 G~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvL 821 (975)
T COG5181 755 GCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVL 821 (975)
T ss_pred hhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHH
Confidence 988876311 44566677667666666555555555554433211 13456666555667778888888
Q ss_pred HHHHHhhcCChHH-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 308 RTVGNIVTGDDAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 308 ~~l~nl~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++++.+-....+. .+++. .+.|.|-+.|.+. ++.-|..|.-++..++-
T Consensus 822 kam~fmFeyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~L 870 (975)
T COG5181 822 KAMCFMFEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhc
Confidence 8888775432222 22222 3677788888877 78888888888887775
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.11 E-value=0.00031 Score=69.48 Aligned_cols=231 Identities=16% Similarity=0.200 Sum_probs=148.6
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 76 IPSMVQGVWS--EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 76 l~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
...++..+++ ++..++..|+-.+..+-.+-...+ ..++-..+++.+++++ .+++..|+.+||+++.|+..
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-----~~e~~~~iieaf~sp~-edvksAAs~ALGsl~vgnl~-- 890 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-----QNELKDTIIEAFNSPS-EDVKSAASYALGSLAVGNLP-- 890 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-----chhhHHHHHHHcCCCh-HHHHHHHHHHhhhhhcCchH--
Confidence 3455555553 345677777777776643321222 2234447788889988 89999999999999987543
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L 230 (384)
..+|.++..+.++ +.=+.-.+..|-.+...... +.+ ...++.+..+|. .+.....+.-++.+|..|
T Consensus 891 ------~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~sv--d~~--~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 891 ------KYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASV--DGL--KPYVEKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred ------hHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhcc--chh--hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 3567777776653 22222222222222211100 000 112333333332 233444566677788888
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
+-..| ...+|.|-..+.++++..+..++.++-+.....+..++.+.. ..+..+..++.+++.+++..|+.++
T Consensus 960 ~l~ep-------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 960 VLIEP-------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HhCCh-------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHH
Confidence 87755 468899999999999999999999998887776666655443 4577888889999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714 311 GNIVTGDDAQTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~ 338 (384)
...+...+..+. +++|.|+..+.
T Consensus 1032 nSaahNKpslIr-----DllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIR-----DLLPELLPLLY 1054 (1233)
T ss_pred HHHHccCHhHHH-----HHHHHHHHHHH
Confidence 999988877655 34455555543
No 91
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.10 E-value=0.00015 Score=69.87 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=162.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--chhH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT--SEHT 153 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~--~~~~ 153 (384)
..++..|++..+.++.+|+..+..++..=+ ...-+.+-..|+ .|.+.|.... |++.--.+.++..|...- ...+
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence 344556778888899998877766543210 111122333443 3677787777 777554444444443310 1111
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch---hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC---RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
.. -.+++|.|.-+|++.+.++++.++..++.||..++++ |+.+. +--.|+++| ..-+.++++++..++..+
T Consensus 879 pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelL-kahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 879 PP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELL-KAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred CC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhhhhHH
Confidence 11 1378999999999999999999999999999777653 33221 334567777 556788999999999998
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
+..-.. ..++..|+.-|...+-..+....-+|+-.+..+.. ..++|.|+.--..++..++.-.++++
T Consensus 953 akaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 953 AKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHH
Confidence 876311 34556666666666555555555555544433221 13466666666677788888888888
Q ss_pred HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+.+-....+.....+ .-+.|.|-+.|.+. +..-|..|+-++..++-
T Consensus 1020 sf~FeyigemskdYi-yav~PlleDAlmDr-D~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYI-YAVTPLLEDALMDR-DLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHhhhHH-HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhc
Confidence 877543222222112 13677788888777 78788888888887775
No 92
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.00065 Score=64.56 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=162.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
++..+++-++.+. +.+|...+.||..+.... +... ..-+.+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~-~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLS-KGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHh-hccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 5777888888888 899999999997765521 1111 112456777888888888889999999998877642 45
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC-h
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP-N 276 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~-~ 276 (384)
+.+.+++..+...+.+-.+..-++.+..+.-..+..-.......+...+|.+.....+..+.++..+..+.-.+...- .
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 567788888888884333332233344444444443333444455677777777777777888777666655443321 2
Q ss_pred HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 277 DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 277 ~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
..... +++.++.-+.......+..++..+|.++.+.+.+.... -..++|.+.+.|-+. .+++|+.+.-++.++
T Consensus 250 ~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 22211 23444444433466778899999999998888776643 357999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHhCCc
Q 016714 357 TA--GNRAQIQVHDSFHL 372 (384)
Q Consensus 357 ~~--~~~~~i~~l~~~~~ 372 (384)
+. .+++ |+.++...+
T Consensus 323 ~svidN~d-I~~~ip~Ll 339 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLL 339 (569)
T ss_pred HHhhccHH-HHHHHHHHH
Confidence 97 5555 777776554
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.09 E-value=7.9e-06 Score=53.30 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 300 ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 300 ~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
+.++..|+++||+++...+....... ..+++.|..+|.++ ++.||..|+|+|+||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 46889999999999888877766644 46899999999988 789999999999986
No 94
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00049 Score=64.48 Aligned_cols=274 Identities=14% Similarity=0.167 Sum_probs=168.7
Q ss_pred CHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHH----H
Q 016714 75 SIPSMVQGVW----SEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTN----V 145 (384)
Q Consensus 75 ~l~~lv~~l~----s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n----l 145 (384)
.++.++..|. .-++..+...+.-+.-+-+ .|..+.+- -..+++-|..+|+++. ++++..+-.++.+ |
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHH
Confidence 4566666654 4577777777777765543 34444432 2356778889998888 8998777665555 3
Q ss_pred hcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHH---H
Q 016714 146 ASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLR---N 222 (384)
Q Consensus 146 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~---~ 222 (384)
.+. |... --...++.++.-+.++++.++..|+.-+..+..-.+. .-...-.|++..++.++.+.....+.. .
T Consensus 240 ~s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 240 RSS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred hcC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 332 2211 1234678899999999999999887666665543331 123344566777777773332222222 2
Q ss_pred HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhh
Q 016714 223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATV 302 (384)
Q Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v 302 (384)
.-..+..++.............++..+.+.+.++..+.+..++.-+..|-...+... ......+.+.|+..|.++++.+
T Consensus 315 ~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~v 393 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEV 393 (675)
T ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHH
Confidence 222344444432222123336788899999999999999999877777665555443 2345578999999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 016714 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQ 363 (384)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~ 363 (384)
...++..+++||...... .. -.++..|+.+.... ..-+...+..++..+|. -+++.
T Consensus 394 vl~~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~lL~aE~ 450 (675)
T KOG0212|consen 394 VLLALSLLASICSSSNSP-NL---RKFLLSLLEMFKED-TKLLEVRGNLIIRQLCLLLNAER 450 (675)
T ss_pred HHHHHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHHHhCHHH
Confidence 999999999999765432 00 01222333344333 34444455555555554 34443
No 95
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00099 Score=65.01 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=44.2
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+..|-++|.+.+..++--|+..|..++..++...+.- =..++..|+++ +..+|+.|.-.+.-|+-
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhc
Confidence 4555666666666666667777776666555444322 13477889999 89999999888877774
No 96
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00017 Score=69.99 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=162.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.+++...++++.++.-|++.+.-+ . -+. +.+ -+...+...+++.+ +-++..++.+..++-.. ..+
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~~---i~e-y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~~ 154 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCL---R-VDK---ITE-YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DPD 154 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeE---e-ehH---HHH-HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---Chh
Confidence 344555555556666665555554322 1 111 111 24667888888888 89999999999888654 455
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
.+...|.++.|-.++.++++.+...|+.+|..|....+..-...+..-.+..++..+ +.-.-+.-+..|-.++...
T Consensus 155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEYV 230 (734)
T ss_pred hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcC
Confidence 677889999999999999999999999999999876653111111122233344443 3333344455566666665
Q ss_pred CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
|... .....++..+...|++.++.+...+...+.++...-.... ...-..+-+.|+.++.+.. .++--+++-+.-+.
T Consensus 231 p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 231 PKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-ELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred CCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 5444 3345667777788888888888888888888776544422 2233355677777777666 66666666666655
Q ss_pred cCChHHHHHH-------------H-------------HcCchHHHHHHh---ccCCchhHHHHHHHHHHHHhc
Q 016714 315 TGDDAQTQFV-------------I-------------DNGVLPCLYQLL---TQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 315 ~~~~~~~~~i-------------~-------------~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~ 358 (384)
...++....- + ++++-+.+.++. ..- +.+..+++.+++++++.
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~ai 379 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAI 379 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhh
Confidence 4444321100 0 111111222222 222 67788899999999997
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0017 Score=65.33 Aligned_cols=263 Identities=16% Similarity=0.198 Sum_probs=170.0
Q ss_pred hhhcCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 016714 71 KKLESIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT 149 (384)
Q Consensus 71 ~~~~~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~ 149 (384)
..++..+-+...+. ..++.+|.-|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++..|..+++.
T Consensus 1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~- 1842 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN- 1842 (2235)
T ss_pred hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-
Confidence 34455666666666 45678899899888866553 68888999999999999999765 68999999999999984
Q ss_pred chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCC---CchhhHHHhc----------CChHHHHHHhcc--
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDS---PSCRDLVLSS----------GALMPLLAQLNE-- 213 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~~~~i~~~----------g~i~~L~~~l~~-- 213 (384)
++..+...+.|++..+..++.. .++..+.+++..|+.+..+. |..+-.++.. +.-+..+..+..
T Consensus 1843 ~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1843 GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTS 1922 (2235)
T ss_pred cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccC
Confidence 7777777888988888887754 67889999999999987543 2222111110 001111222200
Q ss_pred --------------------------------------------------------------------------------
Q 016714 214 -------------------------------------------------------------------------------- 213 (384)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (384)
T Consensus 1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence
Q ss_pred -------------cchhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHH
Q 016714 214 -------------HSKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKI 279 (384)
Q Consensus 214 -------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~ 279 (384)
+.......-...++..|.+..|...... .-|.+|.++..+...+..+-..+++.|..|+.+. -+.
T Consensus 2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~ 2081 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCC 2081 (2235)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHH
Confidence 0000111112222223333322222111 1456676666666666666677888888887654 345
Q ss_pred HHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHHcCchHHHHHHhccC
Q 016714 280 QAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG-DDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 280 ~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
+++.....+..++..+...-. ..-.|+.+|-.+... .++.....++.|++|+|+++|...
T Consensus 2082 ~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2082 DAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 566666677778877765332 344788888887653 345666778899999999999854
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0036 Score=55.09 Aligned_cols=278 Identities=15% Similarity=0.168 Sum_probs=179.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPP---IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~---~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
|.+-..|..++..+..-++..+..++..++... +..+++.|+++.++..+..++ .++-..|...+..|+.. +...
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paal 162 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAAL 162 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHHH
Confidence 444445566777888888888888876542222 334568999999999999888 79999999999999884 7777
Q ss_pred HHHHhcCChHHH--HHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 154 RVVIEHGAVPMF--VQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 154 ~~i~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
..+.+.+..+.+ ..+-...+.-++-.....+-.+.+-++.....+-..|.+..|..-+....|.-+..++......|.
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 778777766543 333333455566677777778887777777778888888888888855567777778888888887
Q ss_pred cCCCCCChhhhhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCChH---HHHHHHHc--CChHHHHHhcCCCChhhHH
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLN--DEEVLTDACWALSYLSDGPND---KIQAVIEA--GVCPRLVELLMHPSATVLI 304 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~--~~~i~~~a~~~l~~l~~~~~~---~~~~~~~~--g~~~~L~~lL~~~~~~v~~ 304 (384)
.......+....+++..+...+... +|.-.-.++-..+.+.....- .-+.+++. -.++...+....+++..+.
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 7544444444477777777777433 343333344444433221100 00111111 1234444555678899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCc--hHH-HHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 305 PALRTVGNIVTGDDAQTQFVIDNGV--LPC-LYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~i~~~g~--l~~-L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.|+-++|.+-+ +.+..+.+.+.|- ... +......+ ...-+..+..+|.+|+.
T Consensus 323 aAiDalGilGS-nteGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 323 AAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhc
Confidence 99999998876 4445555555442 222 23333333 34445667888888886
No 99
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.0011 Score=62.99 Aligned_cols=268 Identities=16% Similarity=0.135 Sum_probs=167.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHH-HHHHHHHHhcCCchhHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFE-AAWALTNVASGTSEHTR 154 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~-a~~~L~nl~~~~~~~~~ 154 (384)
++.+.+.+.+.....+..+...+..++. ...+..+.+.+++..+...+.+.. +....+ ++.+....+..-.
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg---- 207 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLG---- 207 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcC----
Confidence 4555666666667777778877776653 456677778889999999988766 344443 3333322222111
Q ss_pred HHHhcCC---hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 155 VVIEHGA---VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 155 ~i~~~g~---i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
...+... +|.++.-..+....+++.|..+.-.+...-+... .+ -.+++++.-+... .......++..+..+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~llpsll~~l~~~-kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VK-LLLPSLLGSLLEA-KWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hh-HhhhhhHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 1222233 4445555556778888888877776653322110 01 1345555544222 4456678888888888
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC-hHHHHHH----------------------------
Q 016714 232 RGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP-NDKIQAV---------------------------- 282 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~-~~~~~~~---------------------------- 282 (384)
...|..-......++|.+.+.|..+.++++..+..++..++.-- ...++.+
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 77554444445889999999999999999999999888877531 1112221
Q ss_pred --HHcCChHHHHHhc----CCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHH
Q 016714 283 --IEAGVCPRLVELL----MHPSATVLIPALRTVGNIVTGD--DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTIS 354 (384)
Q Consensus 283 --~~~g~~~~L~~lL----~~~~~~v~~~a~~~l~nl~~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~ 354 (384)
++.-.+..++.+| ...+..+...++.+++|++.-- +.....++. .++|.|...+... .|++|..+..+|+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~-~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA-VPEVRAVAARALG 440 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC-ChhHHHHHHHHHH
Confidence 1112233334443 2335566788899999998754 333333333 4777888888888 8999999999998
Q ss_pred HHhc
Q 016714 355 NITA 358 (384)
Q Consensus 355 nl~~ 358 (384)
-+..
T Consensus 441 ~l~e 444 (569)
T KOG1242|consen 441 ALLE 444 (569)
T ss_pred HHHH
Confidence 7775
No 100
>PF05536 Neurochondrin: Neurochondrin
Probab=97.98 E-value=0.00063 Score=66.21 Aligned_cols=235 Identities=15% Similarity=0.101 Sum_probs=161.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchh---HHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHhh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEH---TRVVIEHGAVPMFVQLLSS-------GSDDVREQAVWALGNV 187 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl 187 (384)
.+...+.+|+..+ ..-++.++-.++++..+++.. ++.+.+.=+.+.|-++|.+ +....+.-|+.+|+.+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3667788898888 788999999999999876532 3346676667888889987 4467888899999999
Q ss_pred hCCCCchh-hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHH
Q 016714 188 AGDSPSCR-DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACW 266 (384)
Q Consensus 188 ~~~~~~~~-~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~ 266 (384)
|.+..-.. ..+. +-||.|++.+.+..+.++...+..+|..++............+.++.|.+.+.+ .+.....++.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 98554221 2222 368999999966666689999999999999664434444448999999998877 5556777777
Q ss_pred HHHHhccCChH-----HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-----HHHHHHcCchHHHHHH
Q 016714 267 ALSYLSDGPND-----KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ-----TQFVIDNGVLPCLYQL 336 (384)
Q Consensus 267 ~l~~l~~~~~~-----~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-----~~~i~~~g~l~~L~~l 336 (384)
++.+++..... ....+ ..+++.+...+.......+-.++..|+.+....+.. ...-.-..+...+..+
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 77776654331 11111 134566666666666667778899999997655311 1111223455567777
Q ss_pred hccCCchhHHHHHHHHHHHHhc
Q 016714 337 LTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 337 l~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+.+...+.-|..|....+.+..
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 7776566677777777666664
No 101
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.98 E-value=7.3e-05 Score=64.78 Aligned_cols=189 Identities=14% Similarity=0.054 Sum_probs=117.8
Q ss_pred cCCCHHHHHHHHHHHHhhhCCC--CchhhHHHhc--CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhch
Q 016714 170 SSGSDDVREQAVWALGNVAGDS--PSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA 245 (384)
Q Consensus 170 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~i~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (384)
.+.+-+.+..++.-|..++... ......+... ..+..+...+ .+....+...++.++..++..-...-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4567788888888888887544 1122222211 2344555555 555667889999999999987544433445788
Q ss_pred HHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh---HHHH
Q 016714 246 LPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD---AQTQ 322 (384)
Q Consensus 246 ~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~ 322 (384)
+|.|++.+.+....++..|..+|..++......... .++.+...+.+.++.++..++..+..+....+ ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 999999999999999999999999998875511111 15677778899999999999999999976544 1111
Q ss_pred -HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714 323 -FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365 (384)
Q Consensus 323 -~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~ 365 (384)
...-..+.+.+...+.++ ++++|+.|--++..+...-++...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhc
Confidence 111134778899999999 999999987777777654334333
No 102
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.97 E-value=7.4e-05 Score=54.69 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 016714 302 VLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITAGNRAQIQVHDSF 370 (384)
Q Consensus 302 v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~i~~l~~~ 370 (384)
++...+++|||++..++...+.+.+.|+++.++......+ +|.+|+.|.|++.|++.++++..+.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4667899999999999999999999999999998866432 79999999999999999988876665543
No 103
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=8e-05 Score=72.16 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
...+.+.++++++-++..++.+.+++- ..+.+.+.+.|+++.|-.++.+++ |.+...|+.+|..|...++.
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCC
Confidence 466777888999999999999999884 456677889999999999999777 99999999999999886543
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.96 E-value=0.0016 Score=62.00 Aligned_cols=232 Identities=15% Similarity=0.110 Sum_probs=154.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714 84 WSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-----DMPQLQFEAAWALTNVASGTSEHTRVVIE 158 (384)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 158 (384)
...++.+..+|+++|.|++..+ ...++.+.+.|..+.+++.|+.. + .++.+...++|.-++...++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 3567889999999999999865 55566788999999999999876 4 799999999999999888888877776
Q ss_pred c-CChHHHHHhhcC-----------------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc------
Q 016714 159 H-GAVPMFVQLLSS-----------------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH------ 214 (384)
Q Consensus 159 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~------ 214 (384)
. +++..++..|.. .+......++.++.|+..+.+.... -...+.++.++..+...
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 4 777777776632 1455677888999999876654322 01223445555444221
Q ss_pred --chhHHHHHHHHHHhhhhcCCC---------CCC---hhhhhchHHHHHHhhc----cC----CHhHHHHHHHHHHHhc
Q 016714 215 --SKLSMLRNATWTLSNFCRGKP---------PTP---FEQVKPALPILQRLIH----LN----DEEVLTDACWALSYLS 272 (384)
Q Consensus 215 --~~~~~~~~a~~~L~~L~~~~~---------~~~---~~~~~~~~~~L~~lL~----~~----~~~i~~~a~~~l~~l~ 272 (384)
+......++..+|.|+--... ... .......+..|+.+|. .. -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 234567788888887721110 000 0011233444444442 22 2467888888999988
Q ss_pred cCChHHHHHHHH----------------cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714 273 DGPNDKIQAVIE----------------AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 273 ~~~~~~~~~~~~----------------~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
.........+.. ..+-..|++++.+..+.++..+...+-.+|..+.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 876544443321 2456778888888888888888888888875443
No 105
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.91 E-value=3.2e-05 Score=46.85 Aligned_cols=39 Identities=36% Similarity=0.754 Sum_probs=36.1
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
++.+..+++.|+++.|+.++.+++++++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457788999999999999999999999999999999996
No 106
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0094 Score=54.61 Aligned_cols=229 Identities=13% Similarity=0.153 Sum_probs=158.2
Q ss_pred CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---------chhHHHHHhcCChHHHHHhhcCCCHH--
Q 016714 107 SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT---------SEHTRVVIEHGAVPMFVQLLSSGSDD-- 175 (384)
Q Consensus 107 ~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~---------~~~~~~i~~~g~i~~L~~lL~~~~~~-- 175 (384)
++-...+++.++++.|+.+|.+.+ .++.......|..++..+ ..-...+++.++++.|++-+..-++.
T Consensus 115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 444557889999999999999998 899999999998887632 13446677888999999888653333
Q ss_pred ----HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-chhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHH
Q 016714 176 ----VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPIL 249 (384)
Q Consensus 176 ----v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L 249 (384)
-...++..+-|+..-.+.+...+.+.|.+..|+..+... .-..-..++.-.|+-+........... --.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 345567788898888888888888888888888866333 333455667777777776653222211 13445555
Q ss_pred HHhhc----c-----CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--
Q 016714 250 QRLIH----L-----NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-- 318 (384)
Q Consensus 250 ~~lL~----~-----~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-- 318 (384)
++-+. + +..+...+...+|+.+....... ..+....++....-.+.. ....+..++++|-.+..+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence 44441 1 13467788888888877665544 455666566655555554 55667889999999998876
Q ss_pred HHHHHHHHcCchHHHHHHhc
Q 016714 319 AQTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 319 ~~~~~i~~~g~l~~L~~ll~ 338 (384)
.....+++.+++..+..+.-
T Consensus 352 ~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 66677788777777666655
No 107
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.83 E-value=5.6e-05 Score=45.73 Aligned_cols=39 Identities=41% Similarity=0.729 Sum_probs=35.0
Q ss_pred HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 319 ~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+....+++.|+++.|++++.++ ++.+++.|+|+|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 4667788999999999999987 89999999999999973
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.006 Score=55.83 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=168.9
Q ss_pred hhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----CCCc----HHHHHHcCCHHHHHHhhcCCCChH------HHHH
Q 016714 72 KLESIPSMVQGVWSEDPALQLEATTQFRKLLSIE----RSPP----IDEVIKAGVVPRFVEFLGRHDMPQ------LQFE 137 (384)
Q Consensus 72 ~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~----~~~~----~~~~~~~g~i~~Lv~lL~~~~~~~------~~~~ 137 (384)
.+++++.++.+|.++|.++-...+..+..+...+ ..+. ++.+++.++++.|++-+..-+ .. -...
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLd-Esvkeea~gv~~ 201 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLD-ESVKEEADGVHN 201 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhh-hcchhhhhhhHH
Confidence 3578899999999999998888888888876532 1222 556778899999999887543 33 3455
Q ss_pred HHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--
Q 016714 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE-- 213 (384)
Q Consensus 138 a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~-- 213 (384)
+..++-|+..-.++....+++.|.+.-|+.-+.. +-..-...|..+|+-+..++...+..+....++..+++.+.-
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 6778888888888888888888888777774443 445677888899998888888788888888999999988841
Q ss_pred --c----chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh--HHHHHHHHc
Q 016714 214 --H----SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN--DKIQAVIEA 285 (384)
Q Consensus 214 --~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~--~~~~~~~~~ 285 (384)
+ ...+...+..-+|+.+.....+...-....++....-++.. ....+..++..|-+...+++ .....+++.
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI 360 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 1 13457777777777777664333333335556655545544 45567788888988888766 666677888
Q ss_pred CChHHHHHhcC-CCC---------hhhHHHHHHHHHHhh
Q 016714 286 GVCPRLVELLM-HPS---------ATVLIPALRTVGNIV 314 (384)
Q Consensus 286 g~~~~L~~lL~-~~~---------~~v~~~a~~~l~nl~ 314 (384)
+++..+..+.. .+. ...-+..+.+|+.+.
T Consensus 361 lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 361 LGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 77777776653 221 233455666666654
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0067 Score=53.49 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=185.7
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH--HHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF--VEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L--v~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
+.++.++..+-.+|.++-..|...+..+... ......++++.....+ ..+--..+ .-.+......+..|.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 4567788888888888888888888877553 4445556666655433 33333334 46777788888899988899
Q ss_pred hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhH-HHHH---HHH
Q 016714 152 HTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLS-MLRN---ATW 225 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~-~~~~---a~~ 225 (384)
.....-..|.+..|..-|.. .+.-++..++.....++.... .++.+.+.|.|+.+.+.+...+ ++- -.+. ...
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999888877 677788888888888875432 4677888889999988884322 221 1111 122
Q ss_pred HHhhhhcCC--CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC--hHHHHHhcCCC-Ch
Q 016714 226 TLSNFCRGK--PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV--CPRLVELLMHP-SA 300 (384)
Q Consensus 226 ~L~~L~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~--~~~L~~lL~~~-~~ 300 (384)
.+++..-.+ +.......--.+.....++..+|++.+..|..+++.+-.... ..+.+.+.|- ...++.-..+. ..
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccccc
Confidence 233333322 111111112233444566778899999999999998876544 3445555553 33444333333 33
Q ss_pred hhHHHHHHHHHHhhcCC---hHH----------HHHHHHc-------CchHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 016714 301 TVLIPALRTVGNIVTGD---DAQ----------TQFVIDN-------GVLPCLYQLLTQNHKKSIKKEACWTISNITAGN 360 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~---~~~----------~~~i~~~-------g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 360 (384)
.-+..++++|.+|+... +++ +..+++. .-+..+..+++.+ .++++-.+..++..+++..
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 44677889999987431 111 1122221 3456677888887 8999999988888888755
Q ss_pred HHHHHHHHhCCc
Q 016714 361 RAQIQVHDSFHL 372 (384)
Q Consensus 361 ~~~i~~l~~~~~ 372 (384)
-.+...+-+.|+
T Consensus 442 Walkeifakeef 453 (524)
T KOG4413|consen 442 WALKEIFAKEEF 453 (524)
T ss_pred HHHHHHhcCccc
Confidence 444444434444
No 110
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.79 E-value=0.0014 Score=57.41 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=149.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcC--CCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714 82 GVWSEDPALQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGR--HDMPQLQFEAAWALTNVASGTSEHTRVVIE 158 (384)
Q Consensus 82 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 158 (384)
.+++=++-.++.|++++.++... .+.+.... +...-..+++++++ ++ .++|..++.++.-++.. +++.+.+-+
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~-~~~aqdi~K 232 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFS-KECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 33444556777888888877653 33343333 44556678888876 34 78999999999998884 666644433
Q ss_pred -cCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc--hhhHHHhcCChHHHHHHhcc--cchhHHHHHHHHHHh----
Q 016714 159 -HGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPS--CRDLVLSSGALMPLLAQLNE--HSKLSMLRNATWTLS---- 228 (384)
Q Consensus 159 -~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--~~~~i~~~g~i~~L~~~l~~--~~~~~~~~~a~~~L~---- 228 (384)
...+.-|+++.+. ..+.+...|+..+.|++...|. ....+ -.|-+.+-++.|.. ..|+++....-..=+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~l-ll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPL-LLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhH-hhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 2456667777765 3567888899999999874431 22222 23445556666632 234444332221111
Q ss_pred ------------------hhhcCCCCCChh--------h---hhchHHHHHHhhccCCHh-HHHHHHHHHHHhccCChHH
Q 016714 229 ------------------NFCRGKPPTPFE--------Q---VKPALPILQRLIHLNDEE-VLTDACWALSYLSDGPNDK 278 (384)
Q Consensus 229 ------------------~L~~~~~~~~~~--------~---~~~~~~~L~~lL~~~~~~-i~~~a~~~l~~l~~~~~~~ 278 (384)
.|+..++..... . ...++..|.++++++++. ...-||.-|..+....++.
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH
Confidence 122221111110 1 145677888889887766 5666788888888888888
Q ss_pred HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 279 IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 279 ~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
...+.+.|+-+.++.++.|+++.++-.|+.++.-+.+
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 8888999999999999999999999999998877654
No 111
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.79 E-value=0.00011 Score=53.76 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714 134 LQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSS 201 (384)
Q Consensus 134 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~ 201 (384)
++.....+|+|++..++...+.+.+.|++|.++..-. ..+|-+++.|+|++.|++.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999999999999999999999999998653 5789999999999999999999888776653
No 112
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0042 Score=53.07 Aligned_cols=198 Identities=18% Similarity=0.231 Sum_probs=129.7
Q ss_pred cCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714 116 AGVVPRFVEFLGRHD-MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 116 ~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
...+|.++..|...+ .|-++.+|+.+|+.+.. ....+.+-++.+++...+++.|..++..+-..+..-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 347899999887643 37889999999999873 245677777777777888888888877763211000
Q ss_pred h-------hHH-----HhcCChHHHHHHhcccchhHHH-HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHH
Q 016714 195 R-------DLV-----LSSGALMPLLAQLNEHSKLSML-RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVL 261 (384)
Q Consensus 195 ~-------~~i-----~~~g~i~~L~~~l~~~~~~~~~-~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~ 261 (384)
. ..+ ...+.+..+-..|.+.+.+.+. ..+.+.|.|+-.. ..+-.|..-+..++.-++
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHHH
Confidence 0 000 0111233444444333333332 3455555555432 456667777777888899
Q ss_pred HHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhcc
Q 016714 262 TDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM--HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQ 339 (384)
Q Consensus 262 ~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~ 339 (384)
..+..+++.|-.. -.++.|.+.|. ..++.++..|+.+||.|+. + ..++.|...+.+
T Consensus 205 hEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D 262 (289)
T KOG0567|consen 205 HEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGD 262 (289)
T ss_pred HHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCC
Confidence 9999999987432 34677777774 4578999999999999974 2 245667778888
Q ss_pred CCchhHHHHHHHHHHHHh
Q 016714 340 NHKKSIKKEACWTISNIT 357 (384)
Q Consensus 340 ~~~~~v~~~a~~~L~nl~ 357 (384)
. ++-|++.+..+|.-+-
T Consensus 263 ~-~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 E-ERVVRESCEVALDMLE 279 (289)
T ss_pred c-HHHHHHHHHHHHHHHH
Confidence 7 7888888877776554
No 113
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.007 Score=58.53 Aligned_cols=266 Identities=17% Similarity=0.187 Sum_probs=139.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
+.-+-+++|.++-.....-+--.+.-++..+ .+-.+. ++..+..=|.+.+ +.....|+.+++|+.+ -+..+
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e 145 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE 145 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence 3455677777776555555555555443322 222222 2444555555666 7889999999999976 45555
Q ss_pred HHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 155 VVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
.+.. =|+ ++|.+ ..+-++..|+.+|..|...+|.. +-..+-...++.+| ++.+..+..++...+.-|+.
T Consensus 146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence 5443 133 55554 34678888999999998777642 22233455666666 33334333333333333333
Q ss_pred CCCCCC----------------------hhhh-----hchHH-HHHHhhc----cCCHhHHHHHHHH---HHHhccCChH
Q 016714 233 GKPPTP----------------------FEQV-----KPALP-ILQRLIH----LNDEEVLTDACWA---LSYLSDGPND 277 (384)
Q Consensus 233 ~~~~~~----------------------~~~~-----~~~~~-~L~~lL~----~~~~~i~~~a~~~---l~~l~~~~~~ 277 (384)
..|..- .+.. .+.+. .++.+|+ ..|+..+.....+ |.+.+..++.
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPK 296 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcc
Confidence 322111 1111 11111 1222221 1222222222222 2222221100
Q ss_pred --------------------------HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchH
Q 016714 278 --------------------------KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLP 331 (384)
Q Consensus 278 --------------------------~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~ 331 (384)
.-+.+ ...+..|-.+|.+....++-.|+..++.+++....+ +.+-.+ .+
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d 371 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QD 371 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HH
Confidence 00001 123455555666666667777777777777654332 233333 67
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 016714 332 CLYQLLTQNHKKSIKKEACWTISNITA-GNRAQ 363 (384)
Q Consensus 332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~ 363 (384)
.++..|....|..+|+.|+-.|.-+|- ++..+
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD~~Nak~ 404 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ 404 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhchhhHHH
Confidence 788888855589999999999999996 45444
No 114
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0016 Score=62.33 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=122.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHH---HHHHhhhhcCC---CC
Q 016714 163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNA---TWTLSNFCRGK---PP 236 (384)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a---~~~L~~L~~~~---~~ 236 (384)
..|+.+..+.+..++.+|+.+|..+..... .... .....++++ .+.+..++..| +|..+|.+-.. ..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 336666666777777777777666654222 2111 233455566 56666676666 44555555221 11
Q ss_pred CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHH------------------------------------
Q 016714 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQ------------------------------------ 280 (384)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~------------------------------------ 280 (384)
........++..+...+..-+..++..|..+|+.+-.-+++.+.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 11222244555566666666666777777666665543333222
Q ss_pred --------------HHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHH
Q 016714 281 --------------AVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIK 346 (384)
Q Consensus 281 --------------~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~ 346 (384)
.++.+|....++.-|.++-.+|+..|...++.++...+.... ..++.|++++++. ...+|
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVR 427 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHH
Confidence 234556667777777777778999999999999988776544 3577899999888 88899
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHh
Q 016714 347 KEACWTISNITA---GNRAQIQVHDS 369 (384)
Q Consensus 347 ~~a~~~L~nl~~---~~~~~i~~l~~ 369 (384)
..|..+|..|+. -..+|...+.+
T Consensus 428 L~ai~aL~~Is~~l~i~eeql~~il~ 453 (823)
T KOG2259|consen 428 LKAIFALTMISVHLAIREEQLRQILE 453 (823)
T ss_pred HHHHHHHHHHHHHheecHHHHHHHHH
Confidence 999999988886 36666666554
No 115
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00041 Score=66.18 Aligned_cols=233 Identities=17% Similarity=0.095 Sum_probs=141.1
Q ss_pred CHHHHHHhhcCCCChHHHHHH---HHHHHHHh--cCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714 118 VVPRFVEFLGRHDMPQLQFEA---AWALTNVA--SGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a---~~~L~nl~--~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 192 (384)
.....++.+++++ .+++..| .|.++|.. ....+..+.-....++..++..+.+-+..++..|+.+||.+-.-+.
T Consensus 235 ~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 235 CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 4667888888887 8898887 55666665 2112222222223578889999999999999999999998854443
Q ss_pred chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhh--hcCC----CCCChh--------hhhchHHHHHHhhccCCH
Q 016714 193 SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNF--CRGK----PPTPFE--------QVKPALPILQRLIHLNDE 258 (384)
Q Consensus 193 ~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L--~~~~----~~~~~~--------~~~~~~~~L~~lL~~~~~ 258 (384)
++-...+.. .++.-+.... ..-+..-...++- ++++ ..+..+ .-.|.--+++.-|...=.
T Consensus 314 e~i~QTLdK----Klms~lRRkr--~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~ 387 (823)
T KOG2259|consen 314 EIIQQTLDK----KLMSRLRRKR--TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY 387 (823)
T ss_pred HHHHHHHHH----HHhhhhhhhh--hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHH
Confidence 321111111 1222111000 0000011111111 1211 111111 114555566777766667
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714 259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~ 338 (384)
+++..|...++.|+...+.... ..+..|+..++++...++..|+.+|..|+.. ..++...++.+...|.
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHH
Confidence 8999999999999987765433 3478999999999899999999999988753 2334445666777777
Q ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714 339 QNHKKSIKKEACWTISNITAGNRAQIQVHDS 369 (384)
Q Consensus 339 ~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~ 369 (384)
+. +.++|++.--.|.+.--.+.+.+..++.
T Consensus 457 D~-s~dvRe~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 457 DR-SVDVREALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred hc-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 77 7777777666666655556665555544
No 116
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.67 E-value=0.0014 Score=62.27 Aligned_cols=208 Identities=15% Similarity=0.180 Sum_probs=127.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCC----CCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH---HHH
Q 016714 84 WSEDPALQLEATTQFRKLLSIER----SPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT---RVV 156 (384)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~s~~~----~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~---~~i 156 (384)
....+++.-..+.++..+.+..+ .|++ .|++|.|..+|.+.. ..++......++.|+...++.. +.+
T Consensus 656 ge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-----~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWM 729 (975)
T COG5181 656 GEDYPEVLGSILKAICSIYSVHRFRSMQPPI-----SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWM 729 (975)
T ss_pred CcccHHHHHHHHHHHHHHhhhhcccccCCch-----hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHH
Confidence 34556665555555555544321 2333 478999999999888 8999999999999998766622 222
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
. +--.|+..|.+-+.+++..|...+|-|+.- +-.+.++..|++-| ...+...+....-+++-.+...
T Consensus 730 R---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnL-kvqeRq~RvctsvaI~iVae~c-- 796 (975)
T COG5181 730 R---ICFELVDSLKSWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNL-KVQERQQRVCTSVAISIVAEYC-- 796 (975)
T ss_pred H---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcc-hHHHHHhhhhhhhhhhhhHhhc--
Confidence 1 334578888889999999999999998732 11122344455544 2222222222222233222221
Q ss_pred CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH-HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK-IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~-~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
....++|.|..=-.+++..++.-++.+++.+...-.+. .+.+ ..+.|.|-..|.+.++..+..|...|..++-
T Consensus 797 ----gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 797 ----GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred ----CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 01356677766666777888888888888776542211 1111 2346777777778888777778877777764
Q ss_pred C
Q 016714 316 G 316 (384)
Q Consensus 316 ~ 316 (384)
+
T Consensus 871 n 871 (975)
T COG5181 871 N 871 (975)
T ss_pred C
Confidence 4
No 117
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0064 Score=57.31 Aligned_cols=266 Identities=11% Similarity=0.129 Sum_probs=156.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
++-+..+|.++..+++..+-.++..++..=++.+.- +--...++.++.-+.+++ +.+|..|+..+..+..-.+... .
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~-l 286 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-MDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDL-L 286 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-cCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcch-h
Confidence 455566667777777765555454444211111110 011246888899898888 9999998777777665322221 2
Q ss_pred HHhcCChHHHHHhhcCCCH-HHHHHHHHH---HHhhhCCCCchhhHHHhcC-ChHHHHHHhcccchhHHHHHHHHHHhhh
Q 016714 156 VIEHGAVPMFVQLLSSGSD-DVREQAVWA---LGNVAGDSPSCRDLVLSSG-ALMPLLAQLNEHSKLSMLRNATWTLSNF 230 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~-~v~~~a~~~---L~nl~~~~~~~~~~i~~~g-~i~~L~~~l~~~~~~~~~~~a~~~L~~L 230 (384)
..-.|++..++.++.+..+ .+++.+... |..+++....-.+ ++.| +++.+...+ .+...+.+..++.-+..|
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKYL-SDDREETRIAVLNWIILL 363 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHH
Confidence 2224667777777776554 355544332 3333332211111 2322 466667777 566666666666555556
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh---cCCCChhhHHHHH
Q 016714 231 CRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL---LMHPSATVLIPAL 307 (384)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l---L~~~~~~v~~~a~ 307 (384)
-...|..-......+++.|++-|..++.++...++..++.+|...... +..+.+..+ ...+..-+...+-
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~-------~~~~fl~sLL~~f~e~~~~l~~Rg~ 436 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP-------NLRKFLLSLLEMFKEDTKLLEVRGN 436 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-------cHHHHHHHHHHHHhhhhHHHHhhhh
Confidence 655566666666899999999999999999999999999999875532 224444444 4444444555666
Q ss_pred HHHHHhhcC-ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714 308 RTVGNIVTG-DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362 (384)
Q Consensus 308 ~~l~nl~~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 362 (384)
.++..+|.- +++. +...+..+|...++-+..+.-+.+|.++.-.+++
T Consensus 437 lIIRqlC~lL~aE~--------IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStE 484 (675)
T KOG0212|consen 437 LIIRQLCLLLNAER--------IYRSIADILEREENLKFASTMVQALNTILLTSTE 484 (675)
T ss_pred HHHHHHHHHhCHHH--------HHHHHHHHHhccccchHHHHHHHHHHhhhcccHH
Confidence 666666642 2222 3334555555554555556666666665554444
No 118
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.018 Score=57.22 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=65.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
+++.+.+.++++|+.+|-.|++.+..+ . .+ .++ ..+++.+.+++.+++ +.+|..|+.|+.++-.- ...
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l-~---~~---el~-~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~l---d~~ 160 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL-R---VK---ELL-GNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRL---DKD 160 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc-C---hH---HHH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhc---CHh
Confidence 455666666667777777666666543 1 11 111 124667777777777 77777777777777532 234
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD 190 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 190 (384)
.+.+.|.+..+..++.++++.+...|+.+|..+..+
T Consensus 161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 455666777777777777777777777777776543
No 119
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.016 Score=49.58 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714 87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV 166 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 166 (384)
...-+..|+..|+++.+.. .+..+.+...++. ..++.+.+++|+.... ..++|.|+
T Consensus 18 ~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~ 73 (289)
T KOG0567|consen 18 PLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLV 73 (289)
T ss_pred HHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHH
Confidence 3566777888888776532 2555555555554 6778888999987654 36799999
Q ss_pred HhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC-C-----C
Q 016714 167 QLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-T-----P 238 (384)
Q Consensus 167 ~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~-----~ 238 (384)
..|.. ..+-++..|..+|+++. +.. ..+.+-+.. +++...+...+..++..+-+.... . .
T Consensus 74 ~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p 141 (289)
T KOG0567|consen 74 EVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSP 141 (289)
T ss_pred HHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCc
Confidence 98875 56788999999999986 221 233444444 555556666555555555443200 0 0
Q ss_pred hh-------hhhchHHHHHH-hhccCCHhH-HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHH
Q 016714 239 FE-------QVKPALPILQR-LIHLNDEEV-LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309 (384)
Q Consensus 239 ~~-------~~~~~~~~L~~-lL~~~~~~i-~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~ 309 (384)
+. ....-+.-+-. ++..+.+.+ +..+...|.++ +.++. +..|++-|..++.-.+..+..+
T Consensus 142 ~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Eea---------I~al~~~l~~~SalfrhEvAfV 210 (289)
T KOG0567|consen 142 YISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEA---------INALIDGLADDSALFRHEVAFV 210 (289)
T ss_pred cccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHH---------HHHHHHhcccchHHHHHHHHHH
Confidence 11 11122333332 333333333 33344444443 12222 4556667777888899999999
Q ss_pred HHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhc
Q 016714 310 VGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITA 358 (384)
Q Consensus 310 l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~ 358 (384)
+|.+-+- -.++.|.+.|... +.+.+|.+|+.+|+.|+.
T Consensus 211 fGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 211 FGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred Hhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 9998642 2455666666543 368999999999999984
No 120
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.52 E-value=0.061 Score=49.01 Aligned_cols=241 Identities=12% Similarity=0.131 Sum_probs=155.5
Q ss_pred HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH-----HHHhc--CChHHHHHhhcCCCHHHHHHHHHHH
Q 016714 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR-----VVIEH--GAVPMFVQLLSSGSDDVREQAVWAL 184 (384)
Q Consensus 112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~-----~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L 184 (384)
.+...|+++.|+..|..-+ -+.+..++.+++++.......+. .+... .++..|+.... ++++.-.+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 4566789999999998887 78999999999998876544432 33322 23333333333 456666666667
Q ss_pred HhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHHHHHHhhccCCHhH
Q 016714 185 GNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALPILQRLIHLNDEEV 260 (384)
Q Consensus 185 ~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~~L~~lL~~~~~~i 260 (384)
...+.+.. +...++....+..+.+.+ ..++-++...|..++..+-...+....... ...+.....+|.+++--+
T Consensus 148 Rec~k~e~-l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 148 RECIKHES-LAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHTTSHH-HHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHhhHH-HHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 77666544 556777777888888887 677788889999999886665332222222 456678888999999999
Q ss_pred HHHHHHHHHHhccCChHH---HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC---hHHHHHHHHc--CchHH
Q 016714 261 LTDACWALSYLSDGPNDK---IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD---DAQTQFVIDN--GVLPC 332 (384)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~---~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~i~~~--g~l~~ 332 (384)
+..++..|+.+....... ...+-+..-+..++.+|.+.+..++..|..++--.++.. +.....+... .++..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~f 305 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRF 305 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999998654322 223334466889999999999999999999998888653 2333333332 44555
Q ss_pred HHHHhccC-CchhHHHHHHHHHHHHh
Q 016714 333 LYQLLTQN-HKKSIKKEACWTISNIT 357 (384)
Q Consensus 333 L~~ll~~~-~~~~v~~~a~~~L~nl~ 357 (384)
|.+...+. ++.....|=.+.+..|.
T Consensus 306 l~~f~~~~~~D~qf~~EK~~li~~i~ 331 (335)
T PF08569_consen 306 LKDFHTDRTDDEQFEDEKAYLIKQIE 331 (335)
T ss_dssp HHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCccccHHHHHHHHHHHHH
Confidence 55554443 35555555555555443
No 121
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.012 Score=59.05 Aligned_cols=263 Identities=16% Similarity=0.150 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714 88 PALQLEATTQFRKLLSI-ERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV 166 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 166 (384)
+.....|++.+..+.+. .+..+.+...+.=+++.+...++++- --+|..|||.++.+++- +......-..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSI--DFKDPNNLSEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHH
Confidence 33444455555544321 12445555556667788888888877 68999999999999863 2222222234666677
Q ss_pred Hhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccchhHHHHHHHH-HHhhhhcCCCCCChhhh
Q 016714 167 QLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATW-TLSNFCRGKPPTPFEQV 242 (384)
Q Consensus 167 ~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~ 242 (384)
+.|. +.+..|+-.|+.||..+..+.+.....+..+ +.++.|+.+.+.- +.+.+..+.- .+..++..-........
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 7776 6778899999999999988776543333321 1333444444222 2222233222 22333332222333444
Q ss_pred hchHHHHHHhhcc---CC---HhHHHHHHHHHHHhcc------CChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 243 KPALPILQRLIHL---ND---EEVLTDACWALSYLSD------GPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 243 ~~~~~~L~~lL~~---~~---~~i~~~a~~~l~~l~~------~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
..+...+.++++. .+ .+=...|.++|..+.. ..++.... ++.-+++.+-..|++.-.++-+.++.++
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677777888774 11 2223333343333321 11111111 2334556666666776677778888888
Q ss_pred HHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 311 GNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 311 ~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+++...++..-.++ |+++.+.+.+... ..+--.+..-+|.|+..
T Consensus 667 ~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 667 SSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVT 711 (1010)
T ss_pred hhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhhee
Confidence 888766554444444 4677777777766 55666667777777665
No 122
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.48 E-value=0.011 Score=53.54 Aligned_cols=191 Identities=17% Similarity=0.237 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH---HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--Cc
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI---KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG--TS 150 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~---~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--~~ 150 (384)
+...+..+.......+..++..+.+++... ....++ ..-+++.+...++.+. .+-+..|+.+++-++-. ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 677788888888999999999999998743 223333 2356788888888877 56667777777766553 23
Q ss_pred hhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHhhh---CCCCchhhHHHhcCChHHHHH--Hhccc---------
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSG--SDDVREQAVWALGNVA---GDSPSCRDLVLSSGALMPLLA--QLNEH--------- 214 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~---~~~~~~~~~i~~~g~i~~L~~--~l~~~--------- 214 (384)
.....+++ ...|.|...+.+. +..++..|+.+|+-++ +.++......++ .+..+.. ....+
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 44555555 4778888888764 4567777887887764 333221111111 2221211 11111
Q ss_pred chhHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 215 SKLSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
++..+...|+.+-+-|...-|.... ......+|.|..+|.++|.+++..|-.+|+-|..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1245666665555555544333222 3347789999999999999999999999887753
No 123
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.042 Score=53.38 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=76.0
Q ss_pred ChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcC
Q 016714 238 PFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~ 316 (384)
.......++..|-++|.+....++.-++..+..|+.... .++.+-.+ .+.++..|+ ..+..++..|+-.|.-+|..
T Consensus 323 e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 344556777777788888888888888888888876633 33344333 778888887 67889999999999988753
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+....+ +.-|++.|.+. ++.+|++.+.-+.-++.
T Consensus 400 --~Nak~I-----V~elLqYL~tA-d~sireeivlKvAILaE 433 (938)
T KOG1077|consen 400 --SNAKQI-----VAELLQYLETA-DYSIREEIVLKVAILAE 433 (938)
T ss_pred --hhHHHH-----HHHHHHHHhhc-chHHHHHHHHHHHHHHH
Confidence 333333 33466777777 88888886655555553
No 124
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.069 Score=52.65 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=105.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.|..+-+.|++.|+.++-.|++.+..+- -+.+.-+ ++-.+-+...+.. +-+|..|+.++..+-+-.++...
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence 4666677777888888877777766441 2211111 1223334445556 89999999999998887777766
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
.++ ..+-.+|.+.++.|.-.|+.++-.+|-+.- +.+ ++-...|.++| .+-+.-=+..+..+|..-|+..
T Consensus 180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence 443 455667888889999999999888875532 222 23445566666 3323323334444444444433
Q ss_pred -CCCCh----------------------------hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 235 -PPTPF----------------------------EQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 235 -~~~~~----------------------------~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
+.+.. ..+.-++...-.+|++.++.+...++.+.++++-
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP 316 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP 316 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC
Confidence 21100 0112233444456677777777777777777764
No 125
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.41 E-value=0.0047 Score=56.16 Aligned_cols=212 Identities=12% Similarity=0.096 Sum_probs=143.7
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-----hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-----RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
.+...+.+..|+..|..-+-+.+..+..+.+++....... .+.+... .-+.+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 4556688999999999888899999999999988654332 2333332 123333344344566777777777877
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcCCCChhhHHHH
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLMHPSATVLIPA 306 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~~~~~~v~~~a 306 (384)
.++...-.......+.+-.+....+.++-++..+|..++..+..........++.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77763222233336667777888899999999999999988766655555555544 456788889999999999999
Q ss_pred HHHHHHhhcCChH--H-HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHH
Q 016714 307 LRTVGNIVTGDDA--Q-TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHD 368 (384)
Q Consensus 307 ~~~l~nl~~~~~~--~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~ 368 (384)
+..||.+...... . ..++-+..-+..++.+|.+. +..++-+|.-++--+++ ..+..|..++
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 9999999864332 1 23344556788899999998 89999999999988887 2333344443
No 126
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.026 Score=56.23 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
.+.+++.+.+.|.+++.-.-..+..+.... | -..++ .++.+.+=+.+++ +.+|--|++.++.+-. + .
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~----e 123 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--K----E 123 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--H----H
Confidence 466677667777777776666666665542 2 22222 4777888888888 9999999999987733 1 2
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
+.. .+++.+.+++.++++.||..|+.|+.++..-++ +.+.+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus 124 l~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 222 468899999999999999999999999986654 4455666666666666 888999999999999988765
No 127
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.37 E-value=0.027 Score=52.16 Aligned_cols=232 Identities=15% Similarity=0.099 Sum_probs=150.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
..+.+..++-+++ .+++..+.+++..+..+ ++....+.+.+.--.++.-|.. .+..-+++|+..+..+..-....+
T Consensus 26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDS-KEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 4455554555555 79999999999998885 7778888887755555666654 456678899998888775422211
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.+..|++..++.+. .+.+..++..+..+|..++-.+| ......|++..|.+.+..+..++....+.++.++.+.+
T Consensus 104 --~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 --EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred --cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 13566788888888 66777899999999999998744 44455789999988887766668889999999999877
Q ss_pred hHHHHHHHHcCChHHHHHhcCCC-------Ch--hhHHHHHHHHHHhhcCChHHHHHHHH-cCchHHHHHHhccCCchhH
Q 016714 276 NDKIQAVIEAGVCPRLVELLMHP-------SA--TVLIPALRTVGNIVTGDDAQTQFVID-NGVLPCLYQLLTQNHKKSI 345 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~~-------~~--~v~~~a~~~l~nl~~~~~~~~~~i~~-~g~l~~L~~ll~~~~~~~v 345 (384)
..+. .+...--++.++.-+.+. +. +-...+..++..+...=+...-.-.+ ..++..|+..|..+ .+++
T Consensus 179 ~tR~-yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~i 256 (371)
T PF14664_consen 179 RTRK-YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEI 256 (371)
T ss_pred chhh-hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHH
Confidence 6543 222212234444333222 12 23334445555443221111100011 14667788888877 7778
Q ss_pred HHHHHHHHHHHhc
Q 016714 346 KKEACWTISNITA 358 (384)
Q Consensus 346 ~~~a~~~L~nl~~ 358 (384)
|+...-.+..+-.
T Consensus 257 r~~Ildll~dllr 269 (371)
T PF14664_consen 257 RKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHC
Confidence 8887777776664
No 128
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.0044 Score=60.73 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=144.7
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+....++.+.....+...+....+|.-..+...... ..+++.+.+.+.....---..+++.+++|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 456667776666666677776666662223321111 12455555555443312335789999999999988888
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..+.+.-.++.+-.++..+++.++..++..+.||.-..--+...+.+...=.++........+..+..+++.++..+...
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 88888877888777888899999999999999998766555555555443334444443445666666777776655544
Q ss_pred CCC-CC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHh
Q 016714 234 KPP-TP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVEL 294 (384)
Q Consensus 234 ~~~-~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~l 294 (384)
..+ .. ..........++.++.+.+.+++...+..+.++.....+....+.+...++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 322 22 33346677888999999999999999999999776666666666666655555544
No 129
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0081 Score=58.41 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHH
Q 016714 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPC 332 (384)
Q Consensus 254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~ 332 (384)
...|.+++..|.-+|+.++..+++. ++..+.+| .+-++.|+.-++.+||-.|+++.... ++..
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~l 628 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINL 628 (929)
T ss_pred cccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHH
Confidence 3456667777777777776665543 35556666 34466777777777777766654221 2334
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 333 LYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 333 L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
|-.+..++ ..-||+-|+.+++-|.-
T Consensus 629 Lepl~~D~-~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 629 LEPLTSDP-VDFVRQGALIALAMIMI 653 (929)
T ss_pred HhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence 45555555 56677777776666653
No 130
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.28 E-value=0.0026 Score=63.08 Aligned_cols=191 Identities=18% Similarity=0.172 Sum_probs=126.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-------------hhHHHhcCChHHHHHHhcccchhHHHHHHHHHH
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-------------RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL 227 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L 227 (384)
+...|+.+|++ +++-..++.++.-+..|++.. |+.+. ..++|.|++.+. ..+.........+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence 34556666665 445556666776666655432 22222 236777888773 44455666777778
Q ss_pred hhhhcCCCCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC---hhhH
Q 016714 228 SNFCRGKPPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS---ATVL 303 (384)
Q Consensus 228 ~~L~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~---~~v~ 303 (384)
+++..+-|... ......++|.|++.|.-+|..++..++.+|.-+....+..... .-..++|.+..+=.+++ ..++
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE-HLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH-HHhHHHHHHHhcCCCCCcchhHHH
Confidence 87777544322 2233678899999999999999999999998877654432211 11245677776665554 5789
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
..|+.+++.+....|...-.-....++..|.+.|.++ +..+|++|+.+=.+-.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence 9999999999985554333334446788899999999 8999999987655433
No 131
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.00086 Score=61.80 Aligned_cols=196 Identities=19% Similarity=0.161 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC----CCCCChhhh---hc
Q 016714 172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG----KPPTPFEQV---KP 244 (384)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~----~~~~~~~~~---~~ 244 (384)
.+.-++..|+.+++-+.-+.....+...-......++..+ .+..-..+..++|+++|++.. -|.+..... ..
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 4455667777777766655443334433334455555555 444566788999999999873 244332222 12
Q ss_pred hHHHHHHhh---ccCCHhHHHHHHHHHHHhccCChHHHHHHHHc-------CChHHHHHh-cCCCChhhHHHHHHHHHHh
Q 016714 245 ALPILQRLI---HLNDEEVLTDACWALSYLSDGPNDKIQAVIEA-------GVCPRLVEL-LMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 245 ~~~~L~~lL---~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~-------g~~~~L~~l-L~~~~~~v~~~a~~~l~nl 313 (384)
.+..+...- ...+..+...+.++|+++... .+.+.+. |.+..+... .-...-+++-.||.++||+
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 222222221 123467899999999998753 2222222 222222221 1234668999999999999
Q ss_pred hcCChH-HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHhCCc
Q 016714 314 VTGDDA-QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQVHDSFHL 372 (384)
Q Consensus 314 ~~~~~~-~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~l~~~~~ 372 (384)
..+..- ....-+..-+++.|..++.+..+.++|..|+.+|.--.. +..++....+++-+
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv 619 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALV 619 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHH
Confidence 875432 111112334677888888776688999999998887764 45555554444433
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.12 E-value=0.025 Score=45.10 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=96.3
Q ss_pred hhhHHHhcCChHHHHHHhcccch-----hHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccC--CHhHHHHHH
Q 016714 194 CRDLVLSSGALMPLLAQLNEHSK-----LSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLN--DEEVLTDAC 265 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~--~~~i~~~a~ 265 (384)
+...++..||+..|++++..... .+....++.++..|..+. ....+.. ..++..++.++... |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 34567888999999999965553 467888888999988873 3233333 55666666666543 688999999
Q ss_pred HHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714 266 WALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 266 ~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
..|-++...++.....+.+.=-++.|+..|..+++.++..|+..+..+....+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999888877777776779999999999999999999998888865544
No 133
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.056 Score=53.23 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=152.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
-.|.+|+..-+.+.+++.-.--.|-..+-.. +.... =-|..+-+-|.+++ +.+|.-|+++|..|--
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq--pdLAL----LSIntfQk~L~DpN-~LiRasALRvlSsIRv------- 137 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ--PDLAL----LSINTFQKALKDPN-QLIRASALRVLSSIRV------- 137 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcC--CCcee----eeHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence 3577777777777776666555555554322 22111 13677888888888 8888888887766522
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
.++..=++-.+-++..+.++-||..|+.|+-.+-.-++..++.+. .+++.|..+.++-+...|+.++-.+|-..
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~------e~I~~LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE------EVIKKLLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH------HHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence 122111122233345578899999999999999877666555433 34555547778889999999998888542
Q ss_pred CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHH---------------------HHHH-Hc---C
Q 016714 235 PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKI---------------------QAVI-EA---G 286 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~---------------------~~~~-~~---g 286 (384)
...+.+-...+..+|-.-|..-+..++..|...+.. .+... .... +. -
T Consensus 212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 344455556666666555555555555555444431 00000 0000 00 1
Q ss_pred ChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714 287 VCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366 (384)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~ 366 (384)
++...-.+|.+.++.+...++.++..++..+ +.. .+...|+.+|.+. +.++.-....+.-++-..+.....
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFEP 358 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhh
Confidence 2344556677888889999999998887643 222 2345677777654 344444444444444444444433
No 134
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.1 Score=53.82 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=149.0
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-chhhHH
Q 016714 122 FVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE--HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SCRDLV 198 (384)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~i 198 (384)
+.....+.++..+|..+-.+|..++.. +.......+ ..+...|..-+++.+...+...+.+|..|....+ ...+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344444443389999999999999886 332222222 1233445555555666777777888887775444 222322
Q ss_pred HhcCChHHHHHHhcccchhHHHHHHHHHHhhhh--cCC----CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 199 LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC--RGK----PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 199 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~--~~~----~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
.. .|+.++-.+ ...+...++++..+|..++ ... .++....+...++.+...+-.+........+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 233333333 5567778888888888888 221 22235556777777776665555444444345555544
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHH
Q 016714 273 DGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWT 352 (384)
Q Consensus 273 ~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 352 (384)
.........-.-.+++..+.-+|.+++++++..|+..+.-++..-++..-.-....+++.+..++... .-.+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 32221111112235677888888999999999999999999987665433323334788888888877 78888888888
Q ss_pred HHHHhc-CCHHHHHHHH
Q 016714 353 ISNITA-GNRAQIQVHD 368 (384)
Q Consensus 353 L~nl~~-~~~~~i~~l~ 368 (384)
|--++. -..+.++.+.
T Consensus 893 lekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFL 909 (1176)
T ss_pred HHHHHHHhCHHHHHhhC
Confidence 877776 3444455444
No 135
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=97.09 E-value=0.004 Score=52.01 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=90.9
Q ss_pred HHHHHhhhHHHHhhhhccccCCCcccccchhhhhHHhhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 016714 35 EIRKNKREDNLLKKRREGLLLQPQQQGLDASQNAIEKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVI 114 (384)
Q Consensus 35 ~lRk~kr~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~ 114 (384)
++=..||-+++.+.+.........+.. .............+++.+.+..... ..+..|+..+..+...-++.|+
T Consensus 31 ~~~~ekKw~li~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl 104 (187)
T PF06371_consen 31 NLPPEKKWQLIQQHRQKQAKHSSSSSK----SKSKASAKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFL 104 (187)
T ss_dssp TS-HHHHHHHHHHHHHH---------------------CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-
T ss_pred CCCHHHHHHHHHhHHHhccccchhhhh----hhhhhhhhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhc
Confidence 455677777777777543222200000 0000011123466788887665432 4555566555543234477788
Q ss_pred HcCCHHHHHHhhcC--------CCChHHHHHHHHHHHHHhcCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHH
Q 016714 115 KAGVVPRFVEFLGR--------HDMPQLQFEAAWALTNVASGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALG 185 (384)
Q Consensus 115 ~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 185 (384)
+.|++..|+.+|.. ..+..++.+++.||..|... ......++. .+++..|+..|.+++..++..++..|.
T Consensus 105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999998863 12268899999999999885 555666665 688999999999999999999999998
Q ss_pred hhh
Q 016714 186 NVA 188 (384)
Q Consensus 186 nl~ 188 (384)
.+|
T Consensus 184 ~lc 186 (187)
T PF06371_consen 184 ALC 186 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 136
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.07 E-value=0.033 Score=55.55 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=148.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC
Q 016714 125 FLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL-LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA 203 (384)
Q Consensus 125 lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~ 203 (384)
.|.....|.+...+.|.+...++........+- -.+...+.. ..+..+.++..|+.+++..++-.. +.. ...++
T Consensus 457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~i 531 (1005)
T KOG2274|consen 457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMI 531 (1005)
T ss_pred hcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHH
Confidence 333334477777888888866553211111111 012222332 234566677778888777763221 111 12345
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh--ccCCHhHHHHHHHHHHHhccCChHHHHH
Q 016714 204 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI--HLNDEEVLTDACWALSYLSDGPNDKIQA 281 (384)
Q Consensus 204 i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~~~~~~~~ 281 (384)
++.|+.+. ...+.++......+|+..|..+|......-..+.|.+..++ .++||.+...+-.++-.++.... +...
T Consensus 532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~ 609 (1005)
T KOG2274|consen 532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGP 609 (1005)
T ss_pred HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcc
Confidence 55666665 55677888899999999999887777777677888766554 56678777777777776665321 2222
Q ss_pred HHHcCChHHHHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 282 VIEAGVCPRLVELLMHPS----ATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 282 ~~~~g~~~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
.....+|.++..|..+. .....-++-+|.-+..+.+.-....+-.-++|.+.++.-++++...-..+.-||..+.
T Consensus 610 -m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 610 -MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred -hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 22356899999997765 5566678888887777654333333445688889998888778888888888999888
Q ss_pred cCCHHHHH
Q 016714 358 AGNRAQIQ 365 (384)
Q Consensus 358 ~~~~~~i~ 365 (384)
..+.+|+.
T Consensus 689 s~~~eq~~ 696 (1005)
T KOG2274|consen 689 SVTLEQLL 696 (1005)
T ss_pred hcCHHHHH
Confidence 86666644
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.05 E-value=0.035 Score=55.41 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=146.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 016714 85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPM 164 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~ 164 (384)
+..|.....+.+.+.++.+.. .-...+. .-.+...+..+..+..+-++..|+++++..++ ....... ..++++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence 455777778888888775541 1111111 11344455555544446788888888877763 2222222 2367788
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc-ccchhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714 165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN-EHSKLSMLRNATWTLSNFCRGKPPTPFEQVK 243 (384)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 243 (384)
|+++....+.++....+.+|+..+.-+|+.... .+..+.|-.+.++. ++.|+.+...+--++-.++.. .........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHH
Confidence 888888888999999999999999887765443 44556666666554 455777777777777777764 222233446
Q ss_pred chHHHHHHhhccCC----HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCCh
Q 016714 244 PALPILQRLIHLND----EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 244 ~~~~~L~~lL~~~~----~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
.++|.++..|..++ .....-++..|..+..+.+.-.....-.-++|.+.+..- +++......+-.||..+...+.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999998776 445555566666555543321222222345777777764 4566777888888888887766
Q ss_pred HHHHHHHH
Q 016714 319 AQTQFVID 326 (384)
Q Consensus 319 ~~~~~i~~ 326 (384)
++...--+
T Consensus 693 eq~~t~~~ 700 (1005)
T KOG2274|consen 693 EQLLTWHD 700 (1005)
T ss_pred HHHHhhcc
Confidence 66544333
No 138
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.99 E-value=0.064 Score=44.36 Aligned_cols=110 Identities=17% Similarity=0.269 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714 87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV 166 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 166 (384)
++.++..++.++..++..- ++.- ...+|.+...|.+++ +.+|..|+.+|+.+...+.--. +...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~--~~~v----e~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY--PNLV----EPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKV----KGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC--cHHH----HhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceee----hhhhhHHHH
Confidence 4678888999999887653 3221 135889999999998 9999999999999876422111 112347788
Q ss_pred HhhcCCCHHHHHHHHHHHHhhhCC-CCchhhHHHhcCChHHHHHHhc
Q 016714 167 QLLSSGSDDVREQAVWALGNVAGD-SPSCRDLVLSSGALMPLLAQLN 212 (384)
Q Consensus 167 ~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~~l~ 212 (384)
.++.+++++++..|..++..+... .+. .+. ..++.++..|.
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~~~~~---~i~--~~~~e~i~~l~ 111 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKKRNPN---IIY--NNFPELISSLN 111 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhccch---HHH--HHHHHHHHHHh
Confidence 888999999999999999999866 332 222 24555555553
No 139
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.027 Score=53.42 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=44.9
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
+.+.-..+++++++.+..+.... -...+++ ..+..|-.+|+++. ...|+.|.++|..++-..|+
T Consensus 273 ls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 273 LSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred hcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCc
Confidence 33445778899998887664321 1222332 25788888999988 89999999999999875443
No 140
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.011 Score=58.22 Aligned_cols=221 Identities=13% Similarity=0.042 Sum_probs=155.3
Q ss_pred HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH-hhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHH
Q 016714 145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALG-NVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNA 223 (384)
Q Consensus 145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a 223 (384)
++......+...++.|+...|+.+.....+..+-....+|. .+.-.+. + ....++++.+.+.....-.-....
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 44445666777888899999999998888887777777777 3322221 1 123566777766333322234567
Q ss_pred HHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH-cCChHHHHHhcCCCChh
Q 016714 224 TWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE-AGVCPRLVELLMHPSAT 301 (384)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~-~g~~~~L~~lL~~~~~~ 301 (384)
+-++.||+..+........ ...++.+-.++..+++..+..++.++.||.-++.-....+.+ ...++....++......
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 8889999887654444444 556666777788889999999999999999887655555565 34567777777766777
Q ss_pred hHHHHHHHHHHhhcCChHHHH-HHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 302 VLIPALRTVGNIVTGDDAQTQ-FVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 302 v~~~a~~~l~nl~~~~~~~~~-~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
....++.++..|++....... ..-.....+.+..++.+. +..++.-....+.|+..+..+-+..+.+...
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~ 713 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEV 713 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchH
Confidence 777777777767665544444 222346788899999999 8999999999999977777777777766554
No 141
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.94 E-value=0.091 Score=48.81 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHH-hhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh
Q 016714 174 DDVREQAVWALG-NVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRL 252 (384)
Q Consensus 174 ~~v~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~l 252 (384)
.+-+..|+.-|. -++.++..+-+.... .++..+++.|.+..+.....-|+..|..+|+..+..-+....-.+..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 344455555333 334443332222221 155677888855578888999999999999986654444444445544444
Q ss_pred hccCCHhHHHHHHH-HHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCch
Q 016714 253 IHLNDEEVLTDACW-ALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-AQTQFVIDNGVL 330 (384)
Q Consensus 253 L~~~~~~i~~~a~~-~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l 330 (384)
-...++++...|.. |+.-++.+.+... +..+..++...+.+....++..+..++..-. +....++ ..+.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~dia 450 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIA 450 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhh
Confidence 44455554444443 3444555544322 3334444444666666777778888876533 2222222 4689
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 331 PCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 331 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
|.+++...+. +..+||.|++||..+..
T Consensus 451 P~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 451 PCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 9999999999 99999999999999986
No 142
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.93 E-value=0.076 Score=50.42 Aligned_cols=205 Identities=17% Similarity=0.166 Sum_probs=125.8
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh-cC----CCHHHHHHHHHHHHhhhC-CC
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL-SS----GSDDVREQAVWALGNVAG-DS 191 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL-~~----~~~~v~~~a~~~L~nl~~-~~ 191 (384)
++..++.+..+..++..+..++.+++.+...-+..- ..+ ..+..+..-+ .. ......+..+|..-.+.. ..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 556666666554447788888888888776411111 111 2233333333 22 223444555566555543 33
Q ss_pred CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC---------C----ChhhhhchHHHHHHhhccCCH
Q 016714 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP---------T----PFEQVKPALPILQRLIHLNDE 258 (384)
Q Consensus 192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~---------~----~~~~~~~~~~~L~~lL~~~~~ 258 (384)
+.. ...+..|+.++. + +++-..++.++..+....+. . .......++|.|++.....+.
T Consensus 267 ~~~------~~~~~~L~~lL~-~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 PLA------TELLDKLLELLS-S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred chH------HHHHHHHHHHhC-C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 321 124566777773 3 55667777777777665211 1 112235678888888888777
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHH
Q 016714 259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ 335 (384)
Q Consensus 259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ 335 (384)
+.+...+.+|+++..+-+..+-.---..++|.|++-|..++..++..++.++..+....++....-++ .+++.|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 78888899999999887644322222368999999999999999999999999999877655544332 34454443
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.92 E-value=0.0034 Score=45.98 Aligned_cols=85 Identities=19% Similarity=0.132 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhCCCCc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc
Q 016714 177 REQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL 255 (384)
Q Consensus 177 ~~~a~~~L~nl~~~~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~ 255 (384)
+..++++|..++..-+. ....+ + .++++++..+ .+++..++..++.+|.|++.............+++.|.+++..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~-~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-D-EILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-H-HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777777643322 22222 2 3788999999 8889999999999999999875444444557888889999988
Q ss_pred CCHhHHHHH
Q 016714 256 NDEEVLTDA 264 (384)
Q Consensus 256 ~~~~i~~~a 264 (384)
.|+.|+..|
T Consensus 80 ~d~~Vr~~a 88 (97)
T PF12755_consen 80 PDENVRSAA 88 (97)
T ss_pred CchhHHHHH
Confidence 888887766
No 144
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.13 Score=50.54 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 016714 87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFV 166 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 166 (384)
++..|.--+..+++.+.. .+.. +...+..+..+|.+++ +.+.++|+..|.+++.. +...+.. ...++
T Consensus 219 ~~~LqlViVE~Irkv~~~--~p~~----~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~-p~alk~A-----a~~~i 285 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLA--NPAE----KARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSND-PTALKAA-----ASTYI 285 (948)
T ss_pred cHHHHHHHHHHHHHHHhc--CHHH----hhHHHHHHHHHHhcCC-chhhhhhcceEEEccCC-HHHHHHH-----HHHHH
Confidence 455666666666665442 2222 2235777888998887 89999999999888774 4433322 33445
Q ss_pred HhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhch
Q 016714 167 QLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA 245 (384)
Q Consensus 167 ~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (384)
.++-. ++-.++-..+--|..+.... +. ++ .|.+--+++.| +.+|.++.+.++.....|..... +..+
T Consensus 286 ~l~~kesdnnvklIvldrl~~l~~~~---~~-il-~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrN------vedi 353 (948)
T KOG1058|consen 286 DLLVKESDNNVKLIVLDRLSELKALH---EK-IL-QGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRN------VEDI 353 (948)
T ss_pred HHHHhccCcchhhhhHHHHHHHhhhh---HH-HH-HHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhcc------HHHH
Confidence 54433 23333333333444443211 11 22 23455567777 78888898888887777776532 1222
Q ss_pred HHHHHHhh-c------cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714 246 LPILQRLI-H------LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 246 ~~~L~~lL-~------~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
+..|-+=+ . .++...+.....++.+++..-++.. +.+++.|++.+.+.++......+..+.......+
T Consensus 354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 33332222 1 1235678888899999887766544 3468999999999888777777777776666555
Q ss_pred HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714 319 AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362 (384)
Q Consensus 319 ~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 362 (384)
.....+ +..|+.-+..-...++.+.|.|+++..+.+..+
T Consensus 429 ~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 429 NLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred hHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhHH
Confidence 544433 344444443332567889999999999986554
No 145
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.91 E-value=0.026 Score=57.94 Aligned_cols=230 Identities=16% Similarity=0.143 Sum_probs=140.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC---CCCchh
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG---DSPSCR 195 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~ 195 (384)
++.+...+..-...+.+..|+..|..++....+. ..+ .-++|+++.++.++...|+..|+.+|..+.. +-+..-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 4555555555333678999999998887742221 122 2578999999999999999999999888753 333332
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc------------------CCCCC------Ch----hhh-hchH
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR------------------GKPPT------PF----EQV-KPAL 246 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~------------------~~~~~------~~----~~~-~~~~ 246 (384)
..+.....+|.|-.++.++....++...+..|..|+. +.++. .. ... ..+-
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 3344444666666666432322233222222322221 11111 00 111 2222
Q ss_pred HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 016714 247 PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID 326 (384)
Q Consensus 247 ~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~ 326 (384)
...+.+|..+++-|+...+..|.-||..-.. .=.+.-+++.|+.+|++.+..++..-...|.-++..-..+ -++
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~s 654 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVS 654 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHH
Confidence 3455666777777777777777777743110 0012246889999999988887776666655544321111 134
Q ss_pred cCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 327 NGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 327 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+++|.|.+-|.++ ++.|-..|..+|+-++.
T Consensus 655 eyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDG-EEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Confidence 57899999999999 88899999999998886
No 146
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.90 E-value=0.063 Score=44.40 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC-hHHHHHH
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGA-LMPLLAQ 210 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~-i~~L~~~ 210 (384)
|.++..++-+++.++...+. +++ ..+|.+...|.++++.+|.+|+.+|..|...+. +.-.|. +..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999875443 222 457899999999999999999999999985542 111222 3677777
Q ss_pred hcccchhHHHHHHHHHHhhhhcC
Q 016714 211 LNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
+ .+++++++..|..++..+...
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHh
Confidence 7 788999999999999999887
No 147
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.033 Score=56.59 Aligned_cols=224 Identities=15% Similarity=0.114 Sum_probs=131.8
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
+++..|.+.|++.+ ..++--||..++.++...+.. +. ..++...+.++.- +++..-+.++.+|+.+|..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56788888888888 799999999999999876622 22 2356666665554 457788899999999986543222
Q ss_pred hHHHhcCChHHHHHHhccc-------chhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHH-HHHhhccCCHhHHHHHHH
Q 016714 196 DLVLSSGALMPLLAQLNEH-------SKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPI-LQRLIHLNDEEVLTDACW 266 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~-------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~-L~~lL~~~~~~i~~~a~~ 266 (384)
+.+. .+++.++..|..+ ....++.++|++++.+++.. |..-...+..+.+. |...+...+-..+..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2222 2556666666322 23468888999999999876 32223333444443 334455666677777777
Q ss_pred HHHHhccCChHHHHHHHHcCChHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHH-hccCCc
Q 016714 267 ALSYLSDGPNDKIQAVIEAGVCPRLVELL---MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQL-LTQNHK 342 (384)
Q Consensus 267 ~l~~l~~~~~~~~~~~~~~g~~~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~ 342 (384)
|+....-. .|-+|.=+.+. +.-+...+..+...+..-....+.....++++ +..- +.+- +
T Consensus 494 AlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HW-d 557 (1133)
T KOG1943|consen 494 ALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHW-D 557 (1133)
T ss_pred HHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccc-c
Confidence 77654322 11111111112 22222334444555554444444444444432 2222 4455 7
Q ss_pred hhHHHHHHHHHHHHhcCCHHH
Q 016714 343 KSIKKEACWTISNITAGNRAQ 363 (384)
Q Consensus 343 ~~v~~~a~~~L~nl~~~~~~~ 363 (384)
..+|+.++|+|.++....++.
T Consensus 558 ~~irelaa~aL~~Ls~~~pk~ 578 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPKY 578 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHHh
Confidence 788888888888876544443
No 148
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.88 E-value=0.0029 Score=46.30 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC
Q 016714 220 LRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299 (384)
Q Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~ 299 (384)
+..++++|+..+..-+.........++|.++..+..+|..++..||.+|.+++....+..-. .=..+++.|.+++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 34566777777776655555666889999999999999999999999999998764433211 11367888899999998
Q ss_pred hhhHHHHHHHHHHh
Q 016714 300 ATVLIPALRTVGNI 313 (384)
Q Consensus 300 ~~v~~~a~~~l~nl 313 (384)
+.|+..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 8887665 444443
No 149
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.84 E-value=0.039 Score=52.37 Aligned_cols=203 Identities=20% Similarity=0.287 Sum_probs=119.2
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCHHHHHHhh-cCCC---ChHHHHHHHHHHHHHhcCC
Q 016714 76 IPSMVQGVW-SEDPALQLEATTQFRKLLSIER-SPPIDEVIKAGVVPRFVEFL-GRHD---MPQLQFEAAWALTNVASGT 149 (384)
Q Consensus 76 l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~i~~Lv~lL-~~~~---~~~~~~~a~~~L~nl~~~~ 149 (384)
+..++.... +.++..+..+++.+.-++..-. .+..+ .++..+..-+ ...+ .+..-...+|+..-+.-.+
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 344444433 3456777778887776664311 11111 2233333333 1111 1233344455554443322
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch-------------hhHHHhcCChHHHHHHhcccch
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC-------------RDLVLSSGALMPLLAQLNEHSK 216 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------~~~i~~~g~i~~L~~~l~~~~~ 216 (384)
..... ..+..|+.+|.+ +++...++.+++-+..+.+.+ |+.+... .+|.|++.. ...+
T Consensus 266 ~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~-~~~~ 336 (415)
T PF12460_consen 266 HPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGF-KEAD 336 (415)
T ss_pred CchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHH-hhcC
Confidence 22111 235667778776 778899999999998873322 2222222 466666666 3334
Q ss_pred hHHHHHHHHHHhhhhcCCCCCCh-hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHH
Q 016714 217 LSMLRNATWTLSNFCRGKPPTPF-EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVE 293 (384)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~ 293 (384)
.+...+.+.+|+.+..+-|.... .....++|.+++.|..+|.+++..++.++..+....++....-+ ..+++.|++
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~ 413 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLK 413 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence 44777888899999987653332 23378999999999999999999999999999887754433211 134555443
No 150
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.83 E-value=0.062 Score=46.61 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh
Q 016714 133 QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL 211 (384)
Q Consensus 133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l 211 (384)
.....|+.+|.-++--.+..+..+.+...+..|+.+|. ...+.++..++.+|..+..+++.+...+.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 44566788888888888999999999999999999995 46789999999999999999999999999999999999999
Q ss_pred cccc-hhHHHHHHHHHHhhhhc
Q 016714 212 NEHS-KLSMLRNATWTLSNFCR 232 (384)
Q Consensus 212 ~~~~-~~~~~~~a~~~L~~L~~ 232 (384)
.... +.++.-.+...|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 6433 56666666655544443
No 151
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.83 E-value=0.002 Score=48.48 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=61.1
Q ss_pred CChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 286 GVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 286 g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.++..|+.+| .+.++.+..-||.=||.++...|.....+-+.|+-..++.++.++ +++||.+|..++.-+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3578899999 455778888899999999999898888888889999999999999 99999999999987764
No 152
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.044 Score=54.47 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=147.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh
Q 016714 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLS 200 (384)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~ 200 (384)
..+..+.++. +.++-.++..|..+... .+....+...+++...+..|++.++-+--.|+..+..+|.-.+
T Consensus 731 eai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-------- 800 (982)
T KOG4653|consen 731 EAISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-------- 800 (982)
T ss_pred HHHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------
Confidence 3444455555 78899999999999884 3555566677899999999999999888888888888875433
Q ss_pred cCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714 201 SGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND 277 (384)
Q Consensus 201 ~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~ 277 (384)
..+++.+.+...+.. .++.+-.+-.++.++.+...+........++..+......+|...+..++..++.||.....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 335666666442221 12333334466666666544444444456666777777888888899999999999875432
Q ss_pred HHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHH---cCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 278 KIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGNIVTGDDAQTQFVID---NGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 278 ~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~---~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
...-.+ ..++..++.+. .+++..++..|+..+..+..+.....-.+.. .+....+.......++..++..|+.++
T Consensus 881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222111 13344555555 3567789999999999998876644333332 234445555555554677888888777
Q ss_pred HHHh
Q 016714 354 SNIT 357 (384)
Q Consensus 354 ~nl~ 357 (384)
--+-
T Consensus 960 eei~ 963 (982)
T KOG4653|consen 960 EEIQ 963 (982)
T ss_pred HHHH
Confidence 5554
No 153
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.80 E-value=0.017 Score=57.67 Aligned_cols=187 Identities=19% Similarity=0.169 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH-------------HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-------------RVVIEHGAVPMFVQLLSSGSDDVREQAVWALG 185 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-------------~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 185 (384)
...|+++|+.+ ++-..++.++.-+..+.+... +.+. ..++|.|+..+.......+..-+.+|.
T Consensus 817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence 45566776653 344455566655555443322 2222 257899999998777788888899999
Q ss_pred hhhCCCCchhhHHHh-c-CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC---HhH
Q 016714 186 NVAGDSPSCRDLVLS-S-GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND---EEV 260 (384)
Q Consensus 186 nl~~~~~~~~~~i~~-~-g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~i 260 (384)
++..+-|. ..+.. . ..+|.|++.| +-+|..++.....++.-+....+...-..+..++|.+..+=.+.| ..+
T Consensus 893 hVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 893 HVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence 98886663 23222 1 1344455666 677888989999999988887676777777889999888776655 568
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHH
Q 016714 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGN 312 (384)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (384)
+..|+.++..|+..-+...-.-....++..|.+.|+++.-.+|..|.++=++
T Consensus 970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 9999999999998433333233455789999999999988899999877544
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.75 E-value=0.24 Score=44.86 Aligned_cols=191 Identities=19% Similarity=0.190 Sum_probs=115.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc--CChHHHHHHhcccchhHHHHHHHHHHhhhhcC--CCCC
Q 016714 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG--KPPT 237 (384)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~--~~~~ 237 (384)
+...+..+.+.+...|+.++..+.++...... .+.+... ..+..+.+.+++... +-+..++.++.-+|-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence 33445555566688888888888887754432 2332221 135556666644443 3345566666666554 3345
Q ss_pred ChhhhhchHHHHHHhhccCC--HhHHHHHHHHHHHhc---cCChHHHHHHHHcCChH--HHHHhcCC----------CCh
Q 016714 238 PFEQVKPALPILQRLIHLND--EEVLTDACWALSYLS---DGPNDKIQAVIEAGVCP--RLVELLMH----------PSA 300 (384)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~~--~~i~~~a~~~l~~l~---~~~~~~~~~~~~~g~~~--~L~~lL~~----------~~~ 300 (384)
.......+.|.|.+.+.... ..++..++.+|+-++ ..+.+.+...++ .+. .....++. +++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 55666888899999887554 455566665665544 334333332111 223 11222221 235
Q ss_pred hhHHHHHHHHHHhhcCChH-HHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 301 TVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+...|+.+.+-+.+.-+. ...... ...++.|..+|.++ +..||..|.-+|.-|..
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 6889999999999876554 223222 34689999999999 99999998888876654
No 155
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.0027 Score=58.64 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=91.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhc----CCch---hHHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVAS----GTSE---HTRVVIEHGAVPMFVQLL---SSGSDDVREQAVWALGN 186 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~----~~~~---~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~n 186 (384)
.........|.+.. -..|..++|.++||+. +.+. +...+.. -.+..++..- ...+..++..+..+|+|
T Consensus 433 ~aa~~il~sl~d~~-ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgn 510 (728)
T KOG4535|consen 433 DAANAILMSLEDKS-LNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHhhhHh-HhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence 33444455555544 5789999999999976 2222 2222221 1122222221 12668899999999999
Q ss_pred hhCC-----CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC--CCChhhhhchHHHHHHhh-ccCCH
Q 016714 187 VAGD-----SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PTPFEQVKPALPILQRLI-HLNDE 258 (384)
Q Consensus 187 l~~~-----~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~~L~~lL-~~~~~ 258 (384)
+..- .+.++. ...|.+..++....-...-.+++++|++++||..+.. -........+++.|..++ ++.|-
T Consensus 511 llQvlq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 511 LLQFLQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred HHHHHHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence 8631 111211 1122233333322222356789999999999999852 223334466788888877 45678
Q ss_pred hHHHHHHHHHHHhcc
Q 016714 259 EVLTDACWALSYLSD 273 (384)
Q Consensus 259 ~i~~~a~~~l~~l~~ 273 (384)
.++..|+.+|..-..
T Consensus 589 KVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 589 KVRIRAAAALSVPGK 603 (728)
T ss_pred eEeehhhhhhcCCCC
Confidence 889998888877654
No 156
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.24 Score=47.33 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=84.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh
Q 016714 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ 241 (384)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 241 (384)
.|.|-..|++.-+.+.-.++.++..++..+- -+.+.+. .+..|-.+| .......+-.|..+|..|+...|...
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~~-~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv--- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVDQ-TVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV--- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee---
Confidence 3566667777667777778877777765441 1222221 344555555 56667778888999999988766432
Q ss_pred hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
.-+-+-+-.++.+.+..+..+|...|.. .+.++.++.+++ .++.++.=+.++-..+...|++.|++.-
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred -eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 2333445556666666666666655544 345555555543 3555555555555556666777776654
No 157
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.11 Score=52.45 Aligned_cols=238 Identities=17% Similarity=0.136 Sum_probs=136.8
Q ss_pred CCHHHHHHhhc------CC-CChHHHHHHHHHHHHHhcC--CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhh
Q 016714 117 GVVPRFVEFLG------RH-DMPQLQFEAAWALTNVASG--TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNV 187 (384)
Q Consensus 117 g~i~~Lv~lL~------~~-~~~~~~~~a~~~L~nl~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 187 (384)
|+++.+++.|. .+ +++.-+..|+++++++++- ....-+...+.-.++.+.-.++++..-++..|+|.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 56777777776 22 2366778889999998851 111112233344566777778888899999999999999
Q ss_pred hCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC---ChhhhhchHHHHHHhhccCCHhHHHHH
Q 016714 188 AGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT---PFEQVKPALPILQRLIHLNDEEVLTDA 264 (384)
Q Consensus 188 ~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~~~~~~L~~lL~~~~~~i~~~a 264 (384)
+..+-. +...-..++....+.|..+.+..++..|+.+|.-+..+.+.. ....+.+.+..|+++....+.+.+..+
T Consensus 490 ~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 943321 222223366777788866778889999999999988875322 122234555556666666566666665
Q ss_pred HHHH-HHhccCChHHHHHHHHcCChHHHHHhcCC---CCh---hhHHHHHHHHHH---hhcC---ChHHHHHHHHcCchH
Q 016714 265 CWAL-SYLSDGPNDKIQAVIEAGVCPRLVELLMH---PSA---TVLIPALRTVGN---IVTG---DDAQTQFVIDNGVLP 331 (384)
Q Consensus 265 ~~~l-~~l~~~~~~~~~~~~~~g~~~~L~~lL~~---~~~---~v~~~a~~~l~n---l~~~---~~~~~~~i~~~g~l~ 331 (384)
+..+ +..+..-......+. ..+.....+++.. .++ .=...|.++|.. |... .++.... +..-+++
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Confidence 5544 333322111111111 1334455555542 111 112233333333 3221 2222221 2335677
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 332 CLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
.+-.+|.+. -.++-++++-.+.+++.-
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~ 672 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFL 672 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhh
Confidence 777777777 677778887777777753
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.69 E-value=0.037 Score=44.11 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=96.1
Q ss_pred HHHHHHcCCHHHHHHhhcCCCC-----hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHH
Q 016714 110 IDEVIKAGVVPRFVEFLGRHDM-----PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG--SDDVREQAVW 182 (384)
Q Consensus 110 ~~~~~~~g~i~~Lv~lL~~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~ 182 (384)
..+++..|+++.|++++.++.. .++...++.++..+..+. ......+....|..++.+.... +..+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4678899999999999987662 366677888888887753 3333455556677777777653 5889999999
Q ss_pred HHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 183 ~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
.|-++...++.....+.+.=-++.|+..| +.++.+++.++...+-.|....+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999998887667777666688899999 668889999999888877776543
No 159
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.046 Score=54.35 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=127.7
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
+.+...+..++++.+.++-.|++.++.++.. ......+...+++..+++.|++.+ +-+-..|...+..+|.-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh-----
Confidence 4467778888888889999999999999863 255555667899999999999988 78888888888888763
Q ss_pred HHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 154 RVVIEHGAVPMFVQLLSSGS----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
....++|-|...-.+.. ++.+-..-.++++++....+.-..-.. -.+..++..+ .+++...+..++..+.+
T Consensus 799 ---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 ---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLGQ 873 (982)
T ss_pred ---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHHH
Confidence 34467888887443311 233333336666665322211000001 1334444555 45566778899999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCC-HhHHHHHHHHHHHhccCChHHH
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIHLND-EEVLTDACWALSYLSDGPNDKI 279 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~i~~~a~~~l~~l~~~~~~~~ 279 (384)
||..........+..++..++.+...++ ..++..|...+..+..+.....
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 9986533333455667777777766554 6678888888888877654433
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.66 E-value=0.15 Score=49.32 Aligned_cols=267 Identities=16% Similarity=0.193 Sum_probs=124.6
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
.++..++.++.++|..++..|++.|-.++..+ .+.+.. ++..|+++|.+++ +.-...+-++|..+...++.
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~k-----vaDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~k-- 129 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSK-----VADVLVQLLQTDD-PVELDAVKNSLMSLLKQDPK-- 129 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhH-----HHHHHHHHHhccc-HHHHHHHHHHHHHHHhcCcH--
Confidence 36777888888888888888888888775543 444444 4677888888776 66666666666666553332
Q ss_pred HHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHh-hhCCCCc-hh--hHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714 154 RVVIEHGAVPMFVQLLS---SGSDDVREQAVWALGN-VAGDSPS-CR--DLVLSSGALMPLLAQLNEHSKLSMLRNATWT 226 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~n-l~~~~~~-~~--~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 226 (384)
+.+..+...+. ++++.+++.++..|.. +..-.+. .. .. .+.-++..+-+.|.+-...+ ......+
T Consensus 130 ------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E-~e~~i~~~ikkvL~DVTaeE-F~l~m~l 201 (556)
T PF05918_consen 130 ------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE-MEEFIVDEIKKVLQDVTAEE-FELFMSL 201 (556)
T ss_dssp ------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH-HHHHHHHHHHHHCTT--HHH-HHHHHHH
T ss_pred ------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH-HHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence 22334444333 4567788888876643 2211111 11 11 11112333444442212222 2233344
Q ss_pred HhhhhcCCCCCChhhhhchHHHHHHhh------ccCCHhHHHHHHHHH----HHhccCCh--HHHHHHHHcCChHHHHHh
Q 016714 227 LSNFCRGKPPTPFEQVKPALPILQRLI------HLNDEEVLTDACWAL----SYLSDGPN--DKIQAVIEAGVCPRLVEL 294 (384)
Q Consensus 227 L~~L~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~i~~~a~~~l----~~l~~~~~--~~~~~~~~~g~~~~L~~l 294 (384)
|..+-.........-...+++.+.... ...|++.....+.|+ -+++.+.. .....+. ..++|.+-.+
T Consensus 202 L~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~-~kvlP~l~~l 280 (556)
T PF05918_consen 202 LKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMC-EKVLPKLSDL 280 (556)
T ss_dssp HHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHH-HHTCCCTT--
T ss_pred HHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHH-HHhcCChhhC
Confidence 444443211112222234445444322 334555554444433 33343322 2222222 2355544443
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHcCchHHHHHHhc----cCC-----chhHHHHHHHHHHHHhcCCHHHH
Q 016714 295 LMHPSATVLIPALRTVGNIVTGDDAQ-TQFVIDNGVLPCLYQLLT----QNH-----KKSIKKEACWTISNITAGNRAQI 364 (384)
Q Consensus 295 L~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~g~l~~L~~ll~----~~~-----~~~v~~~a~~~L~nl~~~~~~~i 364 (384)
....+...+++++-++...... .. ..++.+..+|. ... +....+...+++++++...++..
T Consensus 281 ----~e~~kl~lLk~lAE~s~~~~~~d~~-----~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~ 351 (556)
T PF05918_consen 281 ----PEDRKLDLLKLLAELSPFCGAQDAR-----QLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSL 351 (556)
T ss_dssp -------HHHHHHHHHHHHHTT----THH-----HHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHH
T ss_pred ----ChHHHHHHHHHHHHHcCCCCcccHH-----HHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchh
Confidence 4567888999999998654311 12 23344444442 110 23556778899999999888765
Q ss_pred HHH
Q 016714 365 QVH 367 (384)
Q Consensus 365 ~~l 367 (384)
..+
T Consensus 352 ~~l 354 (556)
T PF05918_consen 352 NFL 354 (556)
T ss_dssp H--
T ss_pred hhH
Confidence 555
No 161
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.64 E-value=0.0039 Score=47.01 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=60.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
++..|+++|..++++.....||.=|+.++...|..+..+-+.|+=..++.++.+++++|+.+|+.|+..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 58889999965444888889999999999988999998888999999999999999999999999988764
No 162
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.64 E-value=0.019 Score=39.35 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 016714 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFH 371 (384)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~ 371 (384)
.+.|+|++|++++ .+.....+.+.++++.++++..+.+...+|-.|.++|+-++. +.+-.+.+-+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 5689999999987 555666667789999999999987677888888888887776 666666666554
No 163
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.17 Score=50.02 Aligned_cols=260 Identities=17% Similarity=0.181 Sum_probs=126.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH-
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR- 154 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~- 154 (384)
.+.+-+.+.+....+.++|++++..+-. ...+.+.. .+..|-.+++++. +.+|+.|.++|..+|...+....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence 4455556677788899999998886632 23333322 6778888889988 89999999999998875443211
Q ss_pred -------HHHhcC---ChHHHHHhhcCCCH----HHHHHHHHHHHhhhCCCCch-----hhHH-----HhcCChHHHHHH
Q 016714 155 -------VVIEHG---AVPMFVQLLSSGSD----DVREQAVWALGNVAGDSPSC-----RDLV-----LSSGALMPLLAQ 210 (384)
Q Consensus 155 -------~i~~~g---~i~~L~~lL~~~~~----~v~~~a~~~L~nl~~~~~~~-----~~~i-----~~~g~i~~L~~~ 210 (384)
.+-+.+ +...+..+|+.... .+..+.....++++.+..-. +..+ ...+.+.-|.++
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 111111 22333444443322 23333333333333222100 0000 001112222233
Q ss_pred hcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHH
Q 016714 211 LNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPR 290 (384)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~ 290 (384)
|.+....+..++..-++..+....|.... .++..|..++. |-+....+.++|+-|....+.. ......+..
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe----~~L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a---~~Pskyir~ 470 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE----RGLEHLCEFIE--DCEFTQIAVRILHLLGKEGPKA---PNPSKYIRF 470 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh----HHHHHHHHHHH--hccchHHHHHHHHHHhccCCCC---CCcchhhHH
Confidence 32222233333333333333332211111 11122222221 1112222223333332211100 001112222
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 291 LVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
+...+-=.+..++..|..++.++..+++... ..+.-.|.+.+.+. +.++|..|.+.+.++-
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 3322223456788889999999886554332 23555677888888 8999999999999988
No 164
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.42 Score=50.85 Aligned_cols=287 Identities=17% Similarity=0.185 Sum_probs=150.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
+|+|.+.=.+++..+|..-..... .+-.+....++... ..++.-|+.-|.+.. ..+|+.+|-+|..+..+.+. ..
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~-~Li~D~k~~vd~y~-neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~--~~ 1074 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWN-ALITDSKKVVDEYL-NEILDELLVNLTSKE-WRVREASCLALADLLQGRPF--DQ 1074 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHH-HhccChHHHHHHHH-HHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCCh--HH
Confidence 555555556777777665444444 44332122233322 345666777777666 89999999999999886332 22
Q ss_pred HHhcCChHHHHH----hhcCCCHHHH---HHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc----ccchhHHHHHHH
Q 016714 156 VIEHGAVPMFVQ----LLSSGSDDVR---EQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN----EHSKLSMLRNAT 224 (384)
Q Consensus 156 i~~~g~i~~L~~----lL~~~~~~v~---~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~----~~~~~~~~~~a~ 224 (384)
+.+ -+|.+.. .+.+=.+.+| +.++.+|+.++........-.-...++..++.+|. -+.-.++++.+.
T Consensus 1075 ~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1075 VKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 222 1333332 2223223444 45677788876321111000011113344444442 244577899999
Q ss_pred HHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc------------cCCh--HHHHHHH-------
Q 016714 225 WTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLS------------DGPN--DKIQAVI------- 283 (384)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~------------~~~~--~~~~~~~------- 283 (384)
.++..|+...+..-......++|.|......-.+.+..+...=+.+.- ...+ +.+...+
T Consensus 1153 ~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred HHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence 999999988655444444666677766666555555433221111111 1110 0000000
Q ss_pred HcCChHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CC
Q 016714 284 EAGVCPRLVELLMHP-SATVLIPALRTVGNIVTGDD-AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GN 360 (384)
Q Consensus 284 ~~g~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~ 360 (384)
-...+|.+.+++..+ .-..+..+...+.-++.... +.+.+ .-.++..+...+.+. ++.+++.-+.+.+.++. .+
T Consensus 1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCC
Confidence 012344555554332 22233344444444432111 00000 012455566666776 88999999999999997 78
Q ss_pred HHHHHHHHhCCc
Q 016714 361 RAQIQVHDSFHL 372 (384)
Q Consensus 361 ~~~i~~l~~~~~ 372 (384)
+++.+.+++.-+
T Consensus 1310 ~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1310 PDQMQKLIETLL 1321 (1702)
T ss_pred hHHHHHHHHHHH
Confidence 889998887544
No 165
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.22 Score=51.50 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=138.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc---CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-hhHHHHHhc
Q 016714 84 WSEDPALQLEATTQFRKLLSIERSPPIDEVIKA---GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS-EHTRVVIEH 159 (384)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~---g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~ 159 (384)
++++..+|..+-+.|..++.. +....+... .+...|.+-+++.. ...+...+.||..|-...+ +....+..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k- 738 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPK- 738 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence 355788999999999988764 444444433 23445555555555 5778888888888776545 44444443
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhC-----CCCchhhHHHhcCChHHHHHHhccc--chhHHHHHH-HHHHhhhh
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAG-----DSPSCRDLVLSSGALMPLLAQLNEH--SKLSMLRNA-TWTLSNFC 231 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~i~~~g~i~~L~~~l~~~--~~~~~~~~a-~~~L~~L~ 231 (384)
.|+-++-.++..+...++.+..+|..|+. +...-+ ....++.++..+... .+....... +-++..+.
T Consensus 739 -~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 739 -LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred -HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 35555555577888888888888877762 110000 011455555555322 222222222 33344333
Q ss_pred cCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 232 RGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
... .........+++..+..+|.++.++++..|+..+.-++..-++..-.-....+++.+..++.+..-.++..+-..+
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 332 3445566678888888899999999999999999888877554332222334788888887777777877777777
Q ss_pred HHhhc
Q 016714 311 GNIVT 315 (384)
Q Consensus 311 ~nl~~ 315 (384)
-.++.
T Consensus 894 ekLir 898 (1176)
T KOG1248|consen 894 EKLIR 898 (1176)
T ss_pred HHHHH
Confidence 77653
No 166
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.39 Score=49.28 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.++.+.+.+.+.|..++-.|+..+.++.+.- | ..+ ...++...++++...+.+..=..|+-+|+.++...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4677777888899999999999999998864 2 111 2234666666665544245555788888888773211111
Q ss_pred HHHhcCChHHHHHhhc--------CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh----cccchhHHHHH
Q 016714 155 VVIEHGAVPMFVQLLS--------SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL----NEHSKLSMLRN 222 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l----~~~~~~~~~~~ 222 (384)
.+. .++|.++.-|. +....||..|+++++.++...... -++ +.+..|...| .-+.+..+++.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l~-p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DLK-PVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hhh-HHHHHHHHHHHHHHhcCchhhHhHH
Confidence 111 24555555443 234679999999999998654321 011 1222222222 14556778888
Q ss_pred HHHHHhhhhcC
Q 016714 223 ATWTLSNFCRG 233 (384)
Q Consensus 223 a~~~L~~L~~~ 233 (384)
|..++-.....
T Consensus 491 AsAAlqE~VGR 501 (1133)
T KOG1943|consen 491 ASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHhcc
Confidence 88888766544
No 167
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.55 E-value=0.27 Score=41.92 Aligned_cols=144 Identities=14% Similarity=0.179 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCCc-hhHHHHHhcCCh
Q 016714 88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD----MPQLQFEAAWALTNVASGTS-EHTRVVIEHGAV 162 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~g~i 162 (384)
+.-...|+..+.-++|. .+....++++.+=-.|-.+|..++ .+-++..++.+++.+...++ +....+...+++
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 44455666666666663 677778888886667777876432 26789999999999887544 455667778999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcC-------ChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSG-------ALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g-------~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
|..++.+..+++.-+..|.+++..|..++......+.... .+..++..+.+.++..+..++..+..+|+.+
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999988765432222111 2334444444667788899999999999987
No 168
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.48 E-value=0.069 Score=48.20 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=107.2
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-chhH
Q 016714 76 IPSMV-QGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT-SEHT 153 (384)
Q Consensus 76 l~~lv-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~-~~~~ 153 (384)
+..++ ..+++.++.++..|++++.-..-.+ ..... ..++.+...++.++ +.++..|+.++..+.... ....
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a~-----~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELAK-----EHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhc
Confidence 34444 6788999999999999999665544 22221 23777888886666 899999999999876521 1111
Q ss_pred HHHH-------hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHh-cc--cchhHHHHHH
Q 016714 154 RVVI-------EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQL-NE--HSKLSMLRNA 223 (384)
Q Consensus 154 ~~i~-------~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l-~~--~~~~~~~~~a 223 (384)
.... ....+..+.+.+.+.+++++..|+..++.|.-.+.-. + ....+..|+-.. .. ..+..++...
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~-~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS-D---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC-c---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1111 2346778888889999999999999999986443211 1 012233333222 11 1245677777
Q ss_pred HHHHhhhhcCCCCCChhhhhchHHHHHHhhcc
Q 016714 224 TWTLSNFCRGKPPTPFEQVKPALPILQRLIHL 255 (384)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~ 255 (384)
.+.+-..|...+.........++|.+..+...
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 77777777765444444446666776666644
No 169
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.44 E-value=0.14 Score=47.61 Aligned_cols=185 Identities=12% Similarity=0.098 Sum_probs=118.0
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 77 PSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 77 ~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
..++..+.+. ..+.+..|+..|..+++...-.-+++.. ..++..+++.|.+..++.++..|+++|..++...+.....
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 3344444443 4677788888899888765222333322 3457778888887443899999999999998854432222
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHH-HHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 156 VIEHGAVPMFVQLLSSGSDDVREQAVWA-LGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~-L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
-.+ -+|..+++.-.+..+++...|..+ +.-++...|.. .|..+..++ ...|......++..+..++..-
T Consensus 368 stE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 368 STE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred hHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHHhhc
Confidence 221 245556666566667666666654 44455555531 223344444 3356666677777888888764
Q ss_pred CCCC-hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 235 PPTP-FEQVKPALPILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 235 ~~~~-~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
+... ...+..+.|.+++...+.+..++..+..||..+.
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 3222 2334778888899999999999999999998874
No 170
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.43 E-value=0.89 Score=46.38 Aligned_cols=238 Identities=18% Similarity=0.218 Sum_probs=141.7
Q ss_pred HcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----CCC----HHHHHHHHH
Q 016714 115 KAGVVPRFVEFLGRHD----MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----SGS----DDVREQAVW 182 (384)
Q Consensus 115 ~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~v~~~a~~ 182 (384)
+.|++..++.++.+-. ...+....+..|..++. -..+++.+++.|+++.|+..+. .+. ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4688999999887522 13455556667766666 4899999999999999998774 333 678888877
Q ss_pred HHHhhhCCCCc--hh--hHHHhc--------CChHHHHHHhccc---chhHHHHHHHHHHhhhhcCCCCCChhhhhchHH
Q 016714 183 ALGNVAGDSPS--CR--DLVLSS--------GALMPLLAQLNEH---SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP 247 (384)
Q Consensus 183 ~L~nl~~~~~~--~~--~~i~~~--------g~i~~L~~~l~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 247 (384)
++..+..+-.. .. ...... .-+..+++.+... .++.+....+..|-+|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77776532211 00 000111 1266677777432 357789999999999999864433333333333
Q ss_pred HHHHhh-----ccCCHhHHHHHHHHHHHhccC----C--hHHHHHHHHcCChHHHHHhcCCCC--------h--------
Q 016714 248 ILQRLI-----HLNDEEVLTDACWALSYLSDG----P--NDKIQAVIEAGVCPRLVELLMHPS--------A-------- 300 (384)
Q Consensus 248 ~L~~lL-----~~~~~~i~~~a~~~l~~l~~~----~--~~~~~~~~~~g~~~~L~~lL~~~~--------~-------- 300 (384)
++ ++= ++.+..+. +.+++.++.+ . ....+.+++.|++...+.+|...- +
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22 111 11122232 3344444332 2 355677899999999888884321 1
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+-...+++.|.-++.+... ++..+..++++.+..+=+-+.+..|-.-|--+|-.+..
T Consensus 350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2235577788888876543 44557778887666665433234444444444444444
No 171
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.052 Score=57.18 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=130.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
.|-.++++-++.-...-+..|++-++.|+...-+..+.... ..||.|.++=.+++..|+.....+...|..|+...-+.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence 44555555554433455667888888888754333333333 47888988888999999888877777788887655554
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhccCCHhHH---HHHHHHHHHhcc
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLIHLNDEEVL---TDACWALSYLSD 273 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~i~---~~a~~~l~~l~~ 273 (384)
.+. .++..|+.-+ .+....+++.+|.+|..|.++.|...... +..+-..+.+....-.+.++ ..++.+|+.+|.
T Consensus 1036 y~n-eIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1036 YLN-EILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHH-HHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443 2666666666 56667899999999999999865432211 12222222333322223344 446667777664
Q ss_pred CChHHHHHHHHcCChHHHHHhc-----CCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 274 GPNDKIQAVIEAGVCPRLVELL-----MHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 274 ~~~~~~~~~~~~g~~~~L~~lL-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
..-+.....-...++..+++.| .+.-++++..++.++..++..........+ ..++|.|......-
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSEL 1184 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHcccc
Confidence 2111111111112233444443 244578899999999999877665443222 24566666666554
No 172
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.29 E-value=0.092 Score=45.58 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714 89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL 168 (384)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 168 (384)
.....|++.|.-++-.. ++....+-+...+..|+.+|+....+.++..++.+|..+.-+++.+...+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34555778888776664 56666677889999999999665558999999999999999999999999999999999999
Q ss_pred hcC--CCHHHHHHHHHHHHhhhCCC
Q 016714 169 LSS--GSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 169 L~~--~~~~v~~~a~~~L~nl~~~~ 191 (384)
+++ .+.+++-.++..|.-...+.
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHccc
Confidence 987 46788888888877765443
No 173
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.29 E-value=0.18 Score=46.98 Aligned_cols=145 Identities=15% Similarity=0.213 Sum_probs=106.8
Q ss_pred CCcHHHHHH-cCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-C---CCHHHHHH
Q 016714 107 SPPIDEVIK-AGVVPRFVEFLGRHD--MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-S---GSDDVREQ 179 (384)
Q Consensus 107 ~~~~~~~~~-~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~ 179 (384)
....+.+++ ..+...|...+++.. -+.+-..|+.+++.+....|..-..+.+.|.++.+++.+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 444555666 556667777887653 2688899999999999999999999999999999999887 3 56788888
Q ss_pred HHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchh------HHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHh
Q 016714 180 AVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKL------SMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRL 252 (384)
Q Consensus 180 a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~l 252 (384)
.-.+|+.||-+... .+.+.+.+.++.+++.+.+.... +.....-..+-.|.++.|..+...+..++..+-++
T Consensus 175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l 252 (379)
T PF06025_consen 175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL 252 (379)
T ss_pred HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 88899999877764 46777889999999998433222 44555666777888887766555555544444443
No 174
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.23 E-value=0.0072 Score=33.84 Aligned_cols=29 Identities=24% Similarity=0.451 Sum_probs=25.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 147 (384)
++|.+++++++++ +.+|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 3799999999998 9999999999999875
No 175
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.20 E-value=0.0068 Score=33.96 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=25.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhC
Q 016714 162 VPMFVQLLSSGSDDVREQAVWALGNVAG 189 (384)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 189 (384)
+|.+++++.++++++|..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999874
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.068 Score=54.96 Aligned_cols=142 Identities=24% Similarity=0.234 Sum_probs=108.3
Q ss_pred CCHHHHHHhhcC----CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCC
Q 016714 117 GVVPRFVEFLGR----HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 117 g~i~~Lv~lL~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~ 191 (384)
...|.+++..+. ++ |++|..|.-+|+.+..-+.+... ..+|.|+..+. ++++.++.+++-++|-++...
T Consensus 919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 357777777754 34 99999999999998775444432 35788999887 799999999999999999777
Q ss_pred CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL 271 (384)
Q Consensus 192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l 271 (384)
|..-+. .-+.|...| .+.++.+++.|..+|++|--.+ ...+.|.++-+..+|..++++|..-|=.-+..|
T Consensus 993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 653322 334566666 7788999999999999998763 456689999999999999988877666444444
Q ss_pred ccC
Q 016714 272 SDG 274 (384)
Q Consensus 272 ~~~ 274 (384)
+..
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 443
No 177
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.11 E-value=0.41 Score=44.63 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCC---CCchhhHHHhcCChHHHHHHhcc
Q 016714 137 EAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGD---SPSCRDLVLSSGALMPLLAQLNE 213 (384)
Q Consensus 137 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~i~~~g~i~~L~~~l~~ 213 (384)
.|...|-.+....+.....+.+.+++..++..+..+-....+. -.+...+ .+..+..... ...+ .
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~i-~ 70 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVD-------GYSI-S 70 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCccccccc-------cccc-C
Confidence 4666777777777777888899999999999886432222111 0011100 0111111110 0000 1
Q ss_pred cchhHHHHHHHHHHhhhhc-CC--CCCChhhhh--chHHHHHHhhccCC---HhHHHHHHHHHHHhccCChHHHHHHHHc
Q 016714 214 HSKLSMLRNATWTLSNFCR-GK--PPTPFEQVK--PALPILQRLIHLND---EEVLTDACWALSYLSDGPNDKIQAVIEA 285 (384)
Q Consensus 214 ~~~~~~~~~a~~~L~~L~~-~~--~~~~~~~~~--~~~~~L~~lL~~~~---~~i~~~a~~~l~~l~~~~~~~~~~~~~~ 285 (384)
.....+++..+.++..+.. +. .......+. .+...|...+.+.. +.+...|+..+..+...++.....+.+.
T Consensus 71 ~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~ 150 (379)
T PF06025_consen 71 YQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEA 150 (379)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHc
Confidence 1223455566666666665 22 111111222 34446666676553 7799999999999999999999999999
Q ss_pred CChHHHHHhcC-C---CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 286 GVCPRLVELLM-H---PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 286 g~~~~L~~lL~-~---~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
|+++.+++.+. . ++.++....-.+|+.||- +....+.+.+.+.++.+.+++.++
T Consensus 151 Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 151 GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 99999999987 3 345666666777777776 666777888899999999999887
No 178
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.04 E-value=0.43 Score=48.18 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=90.7
Q ss_pred ccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHH
Q 016714 213 EHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLV 292 (384)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~ 292 (384)
.+.+..+....+..+..+.--.| ....+....|.+...+...++.++.+..|.+..+-...+..--.......++.++
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~ 485 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV 485 (759)
T ss_pred hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh
Confidence 45555555555555544443222 2333467788888889999999999999877665443322212234556677777
Q ss_pred HhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHH
Q 016714 293 ELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA--GNRAQIQV 366 (384)
Q Consensus 293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~i~~ 366 (384)
.+-......++...++.+--++.... ..+++...-+.+...+.+. ...+++.|+..+.-++. |..-.++.
T Consensus 486 el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~~~ 557 (759)
T KOG0211|consen 486 ELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWARLE 557 (759)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhHHH
Confidence 77766677788888887777765332 2333333444455555555 66788888877777775 54444433
No 179
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.04 E-value=0.45 Score=48.10 Aligned_cols=171 Identities=17% Similarity=0.198 Sum_probs=111.8
Q ss_pred HHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchH--HHHHHhhccCCH-h
Q 016714 183 ALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL--PILQRLIHLNDE-E 259 (384)
Q Consensus 183 ~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~--~~L~~lL~~~~~-~ 259 (384)
+|+++....+.....+++.|++..+..++..-.+.++...+...+.|++...+..........+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 4557777777777888999999999999976778889999999999999875332222221212 233334444444 7
Q ss_pred HHHHHHHHHHHhccCChHHH---------HHH--------------HHcCChHH-HHHhc-CCCChhhHHHHHHHHHHhh
Q 016714 260 VLTDACWALSYLSDGPNDKI---------QAV--------------IEAGVCPR-LVELL-MHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 260 i~~~a~~~l~~l~~~~~~~~---------~~~--------------~~~g~~~~-L~~lL-~~~~~~v~~~a~~~l~nl~ 314 (384)
.-..++..++.+....+... +.+ .....+.. +..++ .+..+..+..|+|++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 77777777777765422110 011 11111222 33444 3345677889999999999
Q ss_pred cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
...++....+.+.|+++.+..+-.......++.++.-.+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 988888888889999998888766653344555554444
No 180
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.03 E-value=0.024 Score=38.79 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSS 201 (384)
Q Consensus 135 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~ 201 (384)
...|+|+++++++ ++.....+.+.++++.++++..+ +...+|-.|.++|+-++.... ..+.+.+.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHc
Confidence 4579999999998 46667777778999999998874 778999999999999987654 33444433
No 181
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.01 E-value=0.071 Score=43.15 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=87.0
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhh
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRD 196 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (384)
.+++.|+.+|+.+.+..++.+++++||.|.+-++...+.+... .+.-. -...+...........+ +.... +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~~-~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMMG-ISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhcc-CCCch----H
Confidence 3578889999887669999999999999987655544432221 11000 01111222222221111 11111 2
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
......++..|+..|.+.+-......++.++.++..............++|.++..+.+.+...++...+-|+.|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2233346778888885544444444666666666654444456777899999999998777777777777766653
No 182
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.01 E-value=0.34 Score=48.88 Aligned_cols=268 Identities=11% Similarity=0.102 Sum_probs=163.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
.+.....++....+.+...+....++...-+.+....+....++|.+..+..+.+ +.++...+...++++--.+ +..
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCc
Confidence 4555555555556666666666655554433444555666677888888888777 7888777777766644322 111
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 156 VIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
-+ ....|.++..+++..+.++.+..|.+..+-...+...........++.+..+- ......++..+.+.+..++....
T Consensus 434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence 11 23567888888899999999999988776544332222223333455555544 44456777788888877776532
Q ss_pred CCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 236 PTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 236 ~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
.... ....+.+...+.+...+++..|+..+..++..-.. +. .....++.++.....++...+...+.++.-++
T Consensus 512 ---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la 585 (759)
T KOG0211|consen 512 ---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELA 585 (759)
T ss_pred ---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--ch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence 1111 22333444445555567777777777666543221 11 11234566666655556667777777777554
Q ss_pred cCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 315 TGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 315 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
. -..+.+....++|.+..+..++ .+.||-.++..+--+..
T Consensus 586 ~---v~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 586 E---VLGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILK 625 (759)
T ss_pred H---HhccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence 2 1122344456788888988888 88999999988888876
No 183
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.00 E-value=0.22 Score=48.18 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=85.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714 164 MFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVK 243 (384)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 243 (384)
.++...+ .+...+..|+..+..+..+.|..++. ++..+++++ .+.|..++..|...|..+|...+ ..+.
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~ 95 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS 95 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence 3444444 46889999999999999999876554 677899999 78889999999999999999753 4557
Q ss_pred chHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC---CCChhhHHHHHHHHHH
Q 016714 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM---HPSATVLIPALRTVGN 312 (384)
Q Consensus 244 ~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~---~~~~~v~~~a~~~l~n 312 (384)
.+...|+++|.++++.-...+-++|..+...++.. .+..+...+. .++..+++.++..|..
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 78899999999999877777777777666544422 1222222222 4566778877777654
No 184
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.95 E-value=0.42 Score=40.79 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhcCCCCCChhhhhchHH-HHHHhhccC-----CHhHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHH
Q 016714 221 RNATWTLSNFCRGKPPTPFEQVKPALP-ILQRLIHLN-----DEEVLTDACWALSYLSDGPN-DKIQAVIEAGVCPRLVE 293 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~~~-~L~~lL~~~-----~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~g~~~~L~~ 293 (384)
-+++..|-.++.+ |.........-+| ++..+|... .+..+-.+++.|+.|...++ +.+..+...+++|..++
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4555555555555 6666666655566 566777543 36689999999999998755 56667788999999999
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-------H-cCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 016714 294 LLMHPSATVLIPALRTVGNIVTGDDAQTQFVI-------D-NGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQ 365 (384)
Q Consensus 294 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~-------~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~ 365 (384)
.+..++..-+.-|..+++.|...+. ...++- . .-++..++.-+.+..+..+-|.+..+..+++. ++....
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~ 253 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARA 253 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999999889999999999876433 211111 1 12344444444444388888999999999886 444333
No 185
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.94 E-value=0.53 Score=40.80 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhhhCCCCchhhHHH-hcCChHHHHHHhcc------cc--hh---HHHHHHHHHHhhhhcCCCCCChh
Q 016714 173 SDDVREQAVWALGNVAGDSPSCRDLVL-SSGALMPLLAQLNE------HS--KL---SMLRNATWTLSNFCRGKPPTPFE 240 (384)
Q Consensus 173 ~~~v~~~a~~~L~nl~~~~~~~~~~i~-~~g~i~~L~~~l~~------~~--~~---~~~~~a~~~L~~L~~~~~~~~~~ 240 (384)
+++.++.|+.-|+.--...+...-.+- ..|.+..|++-+.. .+ .. .-.-+++..|..++.+ |+....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 567788877777765544444433333 34555555544321 11 11 2233445555566665 666666
Q ss_pred hhhchHH-HHHHhhccCC-----HhHHHHHHHHHHHhccCC-hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 241 QVKPALP-ILQRLIHLND-----EEVLTDACWALSYLSDGP-NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 241 ~~~~~~~-~L~~lL~~~~-----~~i~~~a~~~l~~l~~~~-~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
.+..-+| +|..+|+..+ +.++-.+++.++.+...+ .+.+..+.+.+++|..++.+..++.--+.-|..++..|
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6654444 6777775543 457888999999998764 46777888999999999999988888888899999988
Q ss_pred hcCCh---------HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc--cccCCCccc
Q 016714 314 VTGDD---------AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL--FVLHEDFSL 381 (384)
Q Consensus 314 ~~~~~---------~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~--ll~~~~~~~ 381 (384)
...+. +....+. .++..++.-+...+++.+-|....+-..++. ++...+.+.+ .+ .++.+.|.-
T Consensus 167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~-~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ-CLPDQLRDGTFSN 241 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH-HS-GGGTSSTTTT
T ss_pred HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH-hCcHHHhcHHHHH
Confidence 75322 2222211 2445544444444388888999999888887 3333344432 22 455555543
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.77 E-value=0.3 Score=42.31 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC----hHHHHHHHHHHHHHhcC-CchhHHHHHhcCChHH
Q 016714 90 LQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM----PQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPM 164 (384)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~----~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~ 164 (384)
-...|+..+.-+++. ++.+..++++.+.-.|..+|+..+. +.++..++.+++.+... +.+....+.+.+++|.
T Consensus 66 RVcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 66 RVCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 334455666666663 7888889999988888999976541 56788888899988874 4567778888999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhhCCCCchh------hHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 165 FVQLLSSGSDDVREQAVWALGNVAGDSPSCR------DLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~------~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.++.+..+++--+..|.+.+..|-.++.... +.+.. ..++..++..+...+++.+.+++.++...|+.+
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 9999999999999999999999876554321 11111 124555666666677889999999999999987
No 187
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.75 E-value=0.43 Score=45.16 Aligned_cols=244 Identities=12% Similarity=0.109 Sum_probs=141.3
Q ss_pred HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhh
Q 016714 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVA 188 (384)
Q Consensus 110 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~ 188 (384)
....++...+..|+.+++++| +.-|.....+|.++-......+..+.. .+...|..++.. ....-...++..++.+.
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 333566678899999999999 999999999999987766666766665 455667777664 45556677888888887
Q ss_pred CCCC-chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHH
Q 016714 189 GDSP-SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWA 267 (384)
Q Consensus 189 ~~~~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~ 267 (384)
.+.. ..++..... ....|+.+.....-...-.....++..++..+|. ....++..+++.=-..+..-..--+.-
T Consensus 204 ~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 204 NGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp TT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred hccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence 6532 222221110 1122333332222233455566666666665432 122334444444344455444555555
Q ss_pred HHHhccCCh-HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc---CchHHHHHHhcc----
Q 016714 268 LSYLSDGPN-DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN---GVLPCLYQLLTQ---- 339 (384)
Q Consensus 268 l~~l~~~~~-~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---g~l~~L~~ll~~---- 339 (384)
+..+...-+ ..... +..-+...+...+.+++..|.+.|+..+.|= ... .++.. .++|.+...+..
T Consensus 279 l~~il~~~~~~~f~~-i~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~-~li~~~~~~i~p~i~~~L~~~~~~ 351 (409)
T PF01603_consen 279 LEEILEVLPPEEFQK-IMVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFL-SLISQNSRVILPIIFPALYRNSKN 351 (409)
T ss_dssp HHHHHTT--HHHHHH-HHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHH-HHHHCTHHHHHHHHHHHHSSTTSS
T ss_pred HHHHHHhcCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHH-HHHHhChHHHHHHHHHHHHHHHHH
Confidence 555555432 22222 2334677888888999999988888766542 111 12222 255666665543
Q ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 340 NHKKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 340 ~~~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
..+..++..|.-++.-+..-+++..+.+
T Consensus 352 HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 352 HWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp -SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 2378899999999999998777765543
No 188
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.73 E-value=0.49 Score=48.21 Aligned_cols=186 Identities=17% Similarity=0.120 Sum_probs=127.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
+.+-..+.++++..+.+|+..+...++... -...-...|.+-.++.....+.+..+...|+.+|..|+......-...
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 444556668899999999999999987432 111112335566666665544448899999999999998655443333
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-
Q 016714 157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP- 235 (384)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~- 235 (384)
. .+.+|.|+..+......+++.+..++-.++...+- ...++.++..+ .+.++.+...+...+....+..+
T Consensus 334 ~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 A-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred H-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 2 36789999999988888888877776666543221 12455666677 77777777665555554444432
Q ss_pred -CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 236 -PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 236 -~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
......+..++|.++......+.+++..+..+++-+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23344558899999999999999999999999887654
No 189
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.73 E-value=0.043 Score=44.32 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=98.3
Q ss_pred ChHHHHHHhcc-cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHH
Q 016714 203 ALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQA 281 (384)
Q Consensus 203 ~i~~L~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~ 281 (384)
.++.++..|.. ...++++..++-+++.+-.. ........+-+++...+...+.+-...++.++..+....++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 45566666644 45667777777777777311 111122334445556666666667788888999988888776555
Q ss_pred HH-HcCChHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchh-HHHHHHHHHH
Q 016714 282 VI-EAGVCPRLVELLM--HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKS-IKKEACWTIS 354 (384)
Q Consensus 282 ~~-~~g~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~-v~~~a~~~L~ 354 (384)
+. ..|+++.+..... ..+..++..++.+|..-|. +...+. .+...+++.|..++..+++.. +|-.|+-+|.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 54 6699999999998 7788888889888876553 444444 455568899999997653565 7888877765
No 190
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.62 E-value=0.54 Score=47.90 Aligned_cols=239 Identities=17% Similarity=0.202 Sum_probs=138.1
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCCC
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~ 191 (384)
.....+|+-|.++...+.-.+-...++++. .+.|++..++.++.+ ....+....+..|...+.-
T Consensus 84 eAtE~~v~~l~~~~~~~~d~e~~~~~~~v~----------~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv- 152 (802)
T PF13764_consen 84 EATEEFVESLEDDSEEEEDPEQEFKIASVL----------AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV- 152 (802)
T ss_pred ccchhhHhhccCccccccCHHHHHHHHHHh----------hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-
Confidence 345566676665331222222223333332 256889999888875 3345555555555555544
Q ss_pred CchhhHHHhcCChHHHHHHhc---ccch----hHHHHHHHHHHhhhhcCCCCCCh-------------hhhhchHHHHHH
Q 016714 192 PSCRDLVLSSGALMPLLAQLN---EHSK----LSMLRNATWTLSNFCRGKPPTPF-------------EQVKPALPILQR 251 (384)
Q Consensus 192 ~~~~~~i~~~g~i~~L~~~l~---~~~~----~~~~~~a~~~L~~L~~~~~~~~~-------------~~~~~~~~~L~~ 251 (384)
+.+|..+++.|+++.|+..+. .... ..+.+..+.++--+......... ......+..|++
T Consensus 153 ~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~ 232 (802)
T PF13764_consen 153 KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLE 232 (802)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHH
Confidence 568999999999999998884 2222 34555444444433332111000 012233555666
Q ss_pred hhcc----CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-----CChhhHHHHHHHHHHhhcCC-----
Q 016714 252 LIHL----NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-----PSATVLIPALRTVGNIVTGD----- 317 (384)
Q Consensus 252 lL~~----~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~----- 317 (384)
.+.+ .++.+....+++|-+|+.+..+..+.++++ +-+.|+- ....--...+.+++.++.+-
T Consensus 233 ~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-----F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~ 307 (802)
T PF13764_consen 233 RLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-----FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSN 307 (802)
T ss_pred HhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-----HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCc
Confidence 6654 468899999999999999999888877543 3333321 11111234467777776553
Q ss_pred -hHHHHHHHHcCchHHHHHHhccCC-------chhHH--------HHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 318 -DAQTQFVIDNGVLPCLYQLLTQNH-------KKSIK--------KEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 318 -~~~~~~i~~~g~l~~L~~ll~~~~-------~~~v~--------~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
....+.+++.|++...+..|.... +++.+ +.+...|.-++.|.... |.++..++
T Consensus 308 G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~ 377 (802)
T PF13764_consen 308 GNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPT-QLLIAEQL 377 (802)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHH-HHHHHhhH
Confidence 255678889999998877776431 22233 23666777777776553 33344433
No 191
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=1.9 Score=42.72 Aligned_cols=158 Identities=21% Similarity=0.160 Sum_probs=104.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (384)
++=+.+-.++.+.++-+|...+++++---.... ..++|..|+..--++.+.++++.|.-+|.-+|..+|.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---
Confidence 444555667777888888888777664322211 2346677777755788899999999999988877652
Q ss_pred hhhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714 240 EQVKPALPILQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 240 ~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
.+|..+.+| .+-++.++.-++-+|+-.|.+..... .+..|-.+..++..-|++-|+-+++-|.....
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 345566666 45689999999999999887754332 13445555567778899999999999864322
Q ss_pred HHHHHHHHcCchHHHHHHhccC
Q 016714 319 AQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 319 ~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
+....=+ .++-..+.+++.+.
T Consensus 657 ~~~~pkv-~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 657 EQLCPKV-NGFRKQLEKVINDK 677 (929)
T ss_pred cccCchH-HHHHHHHHHHhhhh
Confidence 2211101 13455566666654
No 192
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.44 E-value=0.98 Score=40.77 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=104.7
Q ss_pred CCHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC-CCCch
Q 016714 117 GVVPRFV-EFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG-DSPSC 194 (384)
Q Consensus 117 g~i~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~ 194 (384)
+++..|+ ..+.+++ +.+|..|..|||-.+--+.+... ..++.+...+..+++.++..|+.++..+.. ++...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4555555 6778888 89999999999998875443222 236777787777899999999999998863 22111
Q ss_pred hhHH-------HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc----CCHhHHHH
Q 016714 195 RDLV-------LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL----NDEEVLTD 263 (384)
Q Consensus 195 ~~~i-------~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~i~~~ 263 (384)
-+.. .....+..+.+.+ .+.+++++..++..++.|.-...... ...++..|+-+..+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1223455666666 55578899999999988877653222 12333333322222 23455555
Q ss_pred HHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714 264 ACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298 (384)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~ 298 (384)
....+-..+...... +..+...+++.+-.+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 445555555555444 3455566777777776543
No 193
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.64 Score=46.00 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=69.6
Q ss_pred hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714 242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN-DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~-~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
..+++--++.+|.++|-+++..++.....|+.... +.+-.+.+..+...--. =...+...+..-++++...+..-++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 35666667788899999999999998887775432 22211211111111000 01123466788888888888766665
Q ss_pred HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 016714 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA 362 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 362 (384)
.. .+++.|++.+.+. ++.........+.......|.
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCch
Confidence 54 4667889999887 666555555555555554443
No 194
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=0.15 Score=52.64 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=109.3
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 161 AVPMFVQLLSS----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
..|.++...++ ++|+++..|.-+|+.+..-+..+.+ ..++.|+..+..++++-++.++.-+++-|+-..|+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 45666666643 6799999999999999765543322 25788999998889999999999888888876554
Q ss_pred CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
. +.+.-+.|...|+..++.++..|...+++|.-.+. +--.|.+..+..+|.+++..|+.-|=..+--+...
T Consensus 995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 2 34566788889999999999999999999986543 23358999999999999998887777555555543
No 195
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.20 E-value=0.42 Score=44.38 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHH
Q 016714 133 QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPL 207 (384)
Q Consensus 133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L 207 (384)
.++..++.++...+....+.-..++. ..+.....+|.+ ..+.+...|+..|..++... ..+..+...+.+..+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHH
Confidence 34555555555555544444333333 344555555543 34677888888888876543 222222222233333
Q ss_pred HHHh---------------cc------------cchhHHHHHHHHHHhhhhcCCCCCChhhhhch-HHHHHHhhc-----
Q 016714 208 LAQL---------------NE------------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA-LPILQRLIH----- 254 (384)
Q Consensus 208 ~~~l---------------~~------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~-~~~L~~lL~----- 254 (384)
++.+ .. +....-+++|+..+..||...+. .+.+. ...+..+|.
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~----~v~~i~~~~i~~~l~~y~~~ 264 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEK----QVTSILMQYIQQLLQQYASN 264 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhhC
Confidence 3221 01 11123466788888888875321 12222 233444443
Q ss_pred -cCCHhHHHHHHHHHHHhccCChH------------HHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 016714 255 -LNDEEVLTDACWALSYLSDGPND------------KIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT 321 (384)
Q Consensus 255 -~~~~~i~~~a~~~l~~l~~~~~~------------~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 321 (384)
+.++.-...|+..++.++..... ....+....++|-|. -=.+..+-++..|++.+...-..-+..
T Consensus 265 ~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~- 342 (370)
T PF08506_consen 265 PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE- 342 (370)
T ss_dssp TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-
T ss_pred CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-
Confidence 34566777788888888765421 234455566666665 222345677888999988886643321
Q ss_pred HHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 322 QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 322 ~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
.+ .+++|.++..|.++ +..|+..|+.++
T Consensus 343 -~l--~~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 -QL--LQIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp -HH--HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred -HH--HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 11 24889999999999 899999999875
No 196
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.19 E-value=2.1 Score=38.00 Aligned_cols=201 Identities=12% Similarity=0.112 Sum_probs=131.3
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh----hHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhh
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR----DLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSN 229 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~ 229 (384)
.+.+.|.++.|+..+..-+-+-+.-++.+..|+-...-..+ +.+.. -.+.+..++.... .+++.-.+...|..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 46678999999999988777777777778777754322222 22221 1222222332222 25555555555655
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC----hHHHHHhcCCCChhhHHH
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV----CPRLVELLMHPSATVLIP 305 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~----~~~L~~lL~~~~~~v~~~ 305 (384)
..+...-.........+.....+.+.+.-++..+|..+...+.......+..+..... .+.--.++.+++.-++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 5554322222223556666677777788899999999988776654444444444432 344666778889889999
Q ss_pred HHHHHHHhhcCCh---HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 306 ALRTVGNIVTGDD---AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 306 a~~~l~nl~~~~~---~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++..+|.+..+.+ ..+.++-+..-+..+..+|..+ ...++-+|--+..-..+
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 9999999976533 3445555557788999999998 88999999887777776
No 197
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.14 E-value=0.56 Score=44.36 Aligned_cols=235 Identities=15% Similarity=0.110 Sum_probs=134.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
-+..|+..+.|.|+..+......+..+... -......+...+...|.+++..+.......+.+.+++.+..|...--+
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 467888888999999998888888887654 455666677777888888887655477888999999999886331111
Q ss_pred HHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 155 VVIEHGAVPMFVQLLSSGS-DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.....-....|+.+.+.+. .....+...++..+...++..... .+..+++.- ...+..=....+.-+..+...
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence 1111111233334444432 233455566666666555543222 222333333 222332223334445555554
Q ss_pred CCCCChh-hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc---CChHHHHHhcC-----CCChhhHH
Q 016714 234 KPPTPFE-QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA---GVCPRLVELLM-----HPSATVLI 304 (384)
Q Consensus 234 ~~~~~~~-~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~---g~~~~L~~lL~-----~~~~~v~~ 304 (384)
-+...+. ....++..+...+.+.+..|.+.|+....+ +... .++.. .++|.+..-|. |-+..++.
T Consensus 286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3322222 236677778888899999998888755432 1112 12222 24566666653 34778999
Q ss_pred HHHHHHHHhhcCChHHHHH
Q 016714 305 PALRTVGNIVTGDDAQTQF 323 (384)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~ 323 (384)
.|..++.-+...++...+.
T Consensus 360 ~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHH
Confidence 9999999988777655443
No 198
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.12 E-value=2.9 Score=39.48 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=131.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCHHHHHHhhcCC----CChH--HHHHHHHHHHHHh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIER--SPPIDEVIKAGVVPRFVEFLGRH----DMPQ--LQFEAAWALTNVA 146 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~i~~Lv~lL~~~----~~~~--~~~~a~~~L~nl~ 146 (384)
+......++...+.+.++.|+-...+++...+ ..+.+.+.+.-+++.+-.+|.+. +.|+ .+..+..+|+-.|
T Consensus 12 a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC 91 (698)
T KOG2611|consen 12 ALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC 91 (698)
T ss_pred chhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 34456667777788899999999999887652 22344577888889888888653 2233 3445566777777
Q ss_pred cCCchh--HHHHHhcCChHHHHHhhcC-C------CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--
Q 016714 147 SGTSEH--TRVVIEHGAVPMFVQLLSS-G------SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-- 215 (384)
Q Consensus 147 ~~~~~~--~~~i~~~g~i~~L~~lL~~-~------~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-- 215 (384)
.. ++- -..++ +.||.|..++.. . +..+.+.+-.+|..+++..+. ...++..|+++.+.++-.-++
T Consensus 92 ~~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~ 167 (698)
T KOG2611|consen 92 RV-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGS 167 (698)
T ss_pred CC-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCc
Confidence 64 332 23344 468999998874 2 234888999999999988664 455678899999987653221
Q ss_pred -hhHHHHHHHHHH-hhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh--HHHHHHHHcC----C
Q 016714 216 -KLSMLRNATWTL-SNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPN--DKIQAVIEAG----V 287 (384)
Q Consensus 216 -~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~--~~~~~~~~~g----~ 287 (384)
+..+.-.+.-.+ +.+-.+ +. .......++..+..-+...+....-+.|..|..+..... -....+.... .
T Consensus 168 ~d~alal~Vlll~~~~~~cw-~e-~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l 245 (698)
T KOG2611|consen 168 HDMALALKVLLLLVSKLDCW-SE-TIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYL 245 (698)
T ss_pred hhHHHHHHHHHHHHHhcccC-cC-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHH
Confidence 222111111111 111111 11 111122234444444455666777788888874433221 1111111111 1
Q ss_pred hHHHHHhcCCC-ChhhHHHHHHHHHHhh
Q 016714 288 CPRLVELLMHP-SATVLIPALRTVGNIV 314 (384)
Q Consensus 288 ~~~L~~lL~~~-~~~v~~~a~~~l~nl~ 314 (384)
..-++.+|++. .+.-+.+|+....|+.
T Consensus 246 ~~G~~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 246 RTGVVAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred HHHHHHHHhcccCchhcChHHHHHHHHH
Confidence 22234444332 3445667777666664
No 199
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.96 E-value=2.2 Score=36.96 Aligned_cols=202 Identities=20% Similarity=0.186 Sum_probs=120.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLV 198 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i 198 (384)
+|.|+.-+....++..+...+.+|..++..+..+.. -++..|..+...+.......+...+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555454444499999999999999986412211 234556666666666666667777777765544221
Q ss_pred HhcCChHHHHHHh---------cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh-ccCCHhHHHHHHHHH
Q 016714 199 LSSGALMPLLAQL---------NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI-HLNDEEVLTDACWAL 268 (384)
Q Consensus 199 ~~~g~i~~L~~~l---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l 268 (384)
+.+..++..+ ......+.......++..+|...|. .-..+++.+..+| ++.++.++..++.+|
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444431 1122334555667789999998766 3345677778888 788889999999999
Q ss_pred HHhccCChHHHHHHHHcCChHHHHHhcCC-CChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchHHHHHHhccC
Q 016714 269 SYLSDGPNDKIQAVIEAGVCPRLVELLMH-PSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 269 ~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~L~~ll~~~ 340 (384)
..++...--... .....+.+-|.. ..+.+....+..++.+..+.-+ .........++..+-++..+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 999944321111 223444444533 3455555555555555444221 112234456777777777776
No 200
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.95 E-value=0.61 Score=47.53 Aligned_cols=197 Identities=13% Similarity=0.065 Sum_probs=130.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh
Q 016714 163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV 242 (384)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 242 (384)
+.+-.-+.+.+-.-+-.|+..+.-+..... ........|.+-.++.....+.+..+...++.+|..++..-+.......
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 334444455666677777777777765544 1111112234455566665677888888999999999987655556666
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-H
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ-T 321 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~ 321 (384)
...+|.+...+...-..++..+..++-..+.... -....+.+...+.+.++.++..+...+.......+.. .
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 8888999988887777666665555544433211 1134678888899999999999888888877654421 1
Q ss_pred HHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 016714 322 QFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHD 368 (384)
Q Consensus 322 ~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~ 368 (384)
..---.++++.++....+. +.+||+.|.-+++-+.. .+.+.+..++
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111236788888888888 89999999888888876 3444444443
No 201
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.76 E-value=0.94 Score=42.09 Aligned_cols=244 Identities=19% Similarity=0.181 Sum_probs=127.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHH-HHhhhCCCCchhh
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWA-LGNVAGDSPSCRD 196 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~-L~nl~~~~~~~~~ 196 (384)
+..+++=|.++....+|..++--|+.-+. +++++..+...|.+..+++.+.. ++..+...++.+ +.-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 56666666644446888888888888777 49999999999999999999955 333244444434 444445544 334
Q ss_pred HHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhh-hhchHHHHHHhhc---------cCCHhHHHHHHH
Q 016714 197 LVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQ-VKPALPILQRLIH---------LNDEEVLTDACW 266 (384)
Q Consensus 197 ~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~lL~---------~~~~~i~~~a~~ 266 (384)
.+...+....++.++.-....+...... .. ....... ....+..+.+.+. ......+.-++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall 172 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL 172 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence 4444555555566663000000000000 00 0000000 0111111111110 111223333444
Q ss_pred HHHHhc--------------cCChHHHHHHHHcCChHHHHHhcC----CC------------ChhhHHHHHHHHHHhhcC
Q 016714 267 ALSYLS--------------DGPNDKIQAVIEAGVCPRLVELLM----HP------------SATVLIPALRTVGNIVTG 316 (384)
Q Consensus 267 ~l~~l~--------------~~~~~~~~~~~~~g~~~~L~~lL~----~~------------~~~v~~~a~~~l~nl~~~ 316 (384)
++-.++ ...+...+.+.+.|++..++..+. .. +......++++|-|.+..
T Consensus 173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~ 252 (361)
T PF07814_consen 173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL 252 (361)
T ss_pred HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence 443332 111222345566788888888874 11 112345688888888876
Q ss_pred ChHHHHHHHHc--CchHHHH-HHhccCC--chhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 317 DDAQTQFVIDN--GVLPCLY-QLLTQNH--KKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 317 ~~~~~~~i~~~--g~l~~L~-~ll~~~~--~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
+.+...+++.. +.++.+. .++.... ...+...++.++.|++-.+++.++.+...++
T Consensus 253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 66554444433 3333332 2222220 2334567899999999988887777766654
No 202
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=2.5 Score=41.99 Aligned_cols=275 Identities=13% Similarity=0.088 Sum_probs=155.7
Q ss_pred cCHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcC-CCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 016714 74 ESIPSMVQGVWS--------EDPALQLEATTQFRKLLSI-ERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTN 144 (384)
Q Consensus 74 ~~l~~lv~~l~s--------~~~~~~~~a~~~l~~l~s~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~n 144 (384)
+.++-+...+.. +++-....|++.+..+.+. +...+...+.+.=+++.++..++++. --++..||..+..
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is~ 486 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFIST 486 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHHH
Confidence 345556666621 2233444566666666541 23566666777778888998888877 6789999999988
Q ss_pred HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHH-HHhc--ccchhHHHH
Q 016714 145 VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL-AQLN--EHSKLSMLR 221 (384)
Q Consensus 145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~~l~--~~~~~~~~~ 221 (384)
+. .+.....+-..+.+....++.+.+..++-.|+.||.-+..+.. ..+.+.+ .+|+.+ ++|. ..-+.+...
T Consensus 487 ~e---eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sa--hVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 487 IE---EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSA--HVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HH---HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHh--hhhHHHHHHHHhcccccchHHH
Confidence 83 4455555555677778888888888999999999998887663 3344433 233333 3332 222344444
Q ss_pred HHHHHH-hhhhcCCCCCChhhhhchHHHHHH----hhccC-C-----HhHHHHHHHHHHHhcc------CChHHHHHHHH
Q 016714 222 NATWTL-SNFCRGKPPTPFEQVKPALPILQR----LIHLN-D-----EEVLTDACWALSYLSD------GPNDKIQAVIE 284 (384)
Q Consensus 222 ~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~----lL~~~-~-----~~i~~~a~~~l~~l~~------~~~~~~~~~~~ 284 (384)
.+...+ ..++..-.....+....++..+++ ++..+ | .+-+..|.+.|..+.. ..+.... -..
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le 639 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLE 639 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHH
Confidence 443332 222222222222333344443333 33322 1 1223344444443321 1111111 122
Q ss_pred cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 285 AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 285 ~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
....|.+-=.|.+.-.++-..|+.++-+.+....+... +.-|+.+.+.+++.+...-.--++++-++.|+.-
T Consensus 640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 640 VSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 33444444455666677778888888877654433332 2347788888888877323666788889999886
No 203
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.43 Score=45.65 Aligned_cols=150 Identities=25% Similarity=0.337 Sum_probs=101.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714 123 VEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL-LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS 201 (384)
Q Consensus 123 v~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~ 201 (384)
-+++.+.+ +-++...+..++.--.++. +.|++..|++. .++.+++++..|+-+||-+|.+++.
T Consensus 522 ~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 522 NELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence 34455555 6777777776654333322 34678888887 6778999999999999999977763
Q ss_pred CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHH
Q 016714 202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQA 281 (384)
Q Consensus 202 g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~ 281 (384)
.+...+++|..+.+..++...+.+|.-.|.+... .-++..|-.+....+.-++..|+-+++.+.....+....
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 3455677775666788888888899988887532 234556666777788889999999998877554332221
Q ss_pred HHHcCChHHHHHhcC
Q 016714 282 VIEAGVCPRLVELLM 296 (384)
Q Consensus 282 ~~~~g~~~~L~~lL~ 296 (384)
-+ .++...+.+...
T Consensus 659 ~v-~~I~k~f~~vI~ 672 (926)
T COG5116 659 NV-KRIIKKFNRVIV 672 (926)
T ss_pred hH-HHHHHHHHHHHh
Confidence 11 245555655553
No 204
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.45 E-value=0.77 Score=44.19 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=81.8
Q ss_pred hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc--C
Q 016714 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT--G 316 (384)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~--~ 316 (384)
...+.+.+..++..+.+.|..++..+|.+|+.+.+.-.+ ++..+-.|++..|.+-+.+..+.++..|+.+|+.+-. +
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 566788889999999999999999999999998876443 2334556888889888888899999999999999853 3
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 317 DDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 317 ~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
+++.. ....|..++++.++.++|+.|..-+
T Consensus 165 neen~-------~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEENR-------IVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 33332 2345777888776888998865443
No 205
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.44 E-value=0.15 Score=42.51 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCchhhHHH---------------hcCChHHHHHHhcc-----cchhHHHHHHHHHHhhh
Q 016714 171 SGSDDVREQAVWALGNVAGDSPSCRDLVL---------------SSGALMPLLAQLNE-----HSKLSMLRNATWTLSNF 230 (384)
Q Consensus 171 ~~~~~v~~~a~~~L~nl~~~~~~~~~~i~---------------~~g~i~~L~~~l~~-----~~~~~~~~~a~~~L~~L 230 (384)
++.......++..|+|++.....++..+- +...+..|+..+.. .....-..+.+.+|+|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34445667788888888876554432221 22356777877755 12345667889999999
Q ss_pred hcCCCCCChhhh--hc--hHHHHHHhhccCCHhHHHHHHHHHHHhccCChHH
Q 016714 231 CRGKPPTPFEQV--KP--ALPILQRLIHLNDEEVLTDACWALSYLSDGPNDK 278 (384)
Q Consensus 231 ~~~~~~~~~~~~--~~--~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~ 278 (384)
++......+... .. .+..|+.++.+.+..-+.-++.+|.|+|...+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 997422222111 22 3677888888888888899999999999876554
No 206
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.37 E-value=0.19 Score=49.20 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=127.5
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
..+|.++++..+.|..++..-+..+.++. ..-.+.+++.-++|.+..-+.+.+ +.+++.++.++..++.-=.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~--- 401 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLS--- 401 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhc---
Confidence 45789999999999999888888887775 233456778889999999998888 8999999999988876311
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
...++...+..|-.+-.+++..++....-+|+.++.+. +..|..+ .+.++.+.+ .++-...+..+.+++...+.
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftral-kdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRAL-KDPFVPARKAGVLALAATQE 476 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhh-cCCCCCchhhhhHHHhhccc
Confidence 12344445666666666678889999999999998763 3333332 233455545 44445566777777765554
Q ss_pred CCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714 233 GKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL 271 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l 271 (384)
. .........++|.+..+.-.++..++..+..++...
T Consensus 477 ~--~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 477 Y--FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred c--cchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 3 333444467888888887777777777776666443
No 207
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=5 Score=38.05 Aligned_cols=256 Identities=14% Similarity=0.060 Sum_probs=132.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhc---
Q 016714 83 VWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEH--- 159 (384)
Q Consensus 83 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--- 159 (384)
..+++...+..|++.|.+.+++. +..... ...-.+..++.-|-++++.+++.++..+|+-+... ....-+..
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~-P~kv~t-h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~---~~~~~l~~~~l 341 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGA-PDKVRT-HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK---ASNDDLESYLL 341 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccC-cHHHHH-hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh---hhhcchhhhch
Confidence 34556678888999999999873 222222 22234555666565555589999999999887652 11111122
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhC--CCCchhhHHHh--cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAG--DSPSCRDLVLS--SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~i~~--~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
++.-.+..+..+.+++++..+..+++.++. +.+ .++.+.+ .+...+++-.| +++++.+. .||......|. |
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~-~e~~Fte~v~k~~~~lllhl-~d~~p~va-~ACr~~~~~c~--p 416 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG-WEEFFTEQVKKRLAPLLLHL-QDPNPYVA-RACRSELRTCY--P 416 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC-chhhhHHHHHhccccceeee-CCCChHHH-HHHHHHHHhcC--c
Confidence 234456667788999999999988888763 221 3333332 12334555555 45555443 34444444443 3
Q ss_pred CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
+.......++++...+.... ..-.-+.-|++. +....++....+ ......++++.-+.++..+...-++..-
T Consensus 417 ~l~rke~~~~~q~~ld~~~~--~~q~Fyn~~c~~-L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 417 NLVRKELYHLFQESLDTDMA--RFQAFYNQWCIQ-LNHIHPDILMLL-----LTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred hhHHHHHHHHHhhhhHHhHH--HHHHHHHHHHHH-HhhhCHHHHHHH-----HHhchhheecchHHHHHHHHHHHHHHHH
Confidence 33333334444422211110 000011122221 111112221111 1223334455556777777777777764
Q ss_pred CChHHHHHHHH-cCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 316 GDDAQTQFVID-NGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 316 ~~~~~~~~i~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
..........+ .-+...+..+...+ .+++++.|.-++.-+.
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS 530 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence 43322222222 12333455555556 8889988887776544
No 208
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.27 E-value=1.2 Score=43.87 Aligned_cols=145 Identities=19% Similarity=0.149 Sum_probs=105.2
Q ss_pred CCHHHHHHhhcC----CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCC
Q 016714 117 GVVPRFVEFLGR----HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS-SGSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 117 g~i~~Lv~lL~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~ 191 (384)
..-|.+.+...+ ++ +.++..|.-+|..+..-+.+... .-+|.|+..+. +++|.++.+|+-+||.++...
T Consensus 892 ~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 344555556554 44 99999999999887654333322 34788999887 799999999999999887543
Q ss_pred CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 016714 192 PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYL 271 (384)
Q Consensus 192 ~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l 271 (384)
....+. .-..|.+.| .+.+..+++.++.++.+|.-.. ...+.|-++.++.+|..+|.++..-|=..+..+
T Consensus 966 N~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 966 NTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 322222 234566666 6678889999999999888653 234578899999999999998877777777777
Q ss_pred ccCChH
Q 016714 272 SDGPND 277 (384)
Q Consensus 272 ~~~~~~ 277 (384)
+..+..
T Consensus 1036 a~KdNt 1041 (1128)
T COG5098 1036 AKKDNT 1041 (1128)
T ss_pred Hhcccc
Confidence 766554
No 209
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.19 E-value=0.27 Score=40.95 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhhhhcCCCCCC-h---------------hhhhchHHHHHHhhcc------CCHhHHHHHHHHHHHhccC
Q 016714 217 LSMLRNATWTLSNFCRGKPPTP-F---------------EQVKPALPILQRLIHL------NDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~-~---------------~~~~~~~~~L~~lL~~------~~~~i~~~a~~~l~~l~~~ 274 (384)
......++..|+||++.+.... . ......+..|+.++.. +...-..+.+..+.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 3355566777777777542211 0 1113455666666543 3355677888999999987
Q ss_pred ChHHHHHHHHc--CC--hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH--cCchHHHHHHhccC
Q 016714 275 PNDKIQAVIEA--GV--CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID--NGVLPCLYQLLTQN 340 (384)
Q Consensus 275 ~~~~~~~~~~~--g~--~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~--~g~l~~L~~ll~~~ 340 (384)
...+. .+++. +. +..|+.++.+.+..-+.-++.+|-|+|...+.+...+-+ .+++|.|+--|..+
T Consensus 89 ~~gR~-~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 89 PEGRQ-FFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred HHHHH-HHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 66554 44443 34 788888888886666677999999999977777443332 47888877777755
No 210
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.14 E-value=0.27 Score=39.68 Aligned_cols=145 Identities=18% Similarity=0.155 Sum_probs=92.9
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCC
Q 016714 161 AVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238 (384)
Q Consensus 161 ~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~ 238 (384)
.++.++..|. ...++++.++.-++..+- +..++...+ .+...+..+....+.+-...++.++..+-...|...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 3455555554 366789999999998884 223333222 333444433344455566677777887777654433
Q ss_pred hhhh--hchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChh-hHHHHHHHHHH
Q 016714 239 FEQV--KPALPILQRLIH--LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSAT-VLIPALRTVGN 312 (384)
Q Consensus 239 ~~~~--~~~~~~L~~lL~--~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~-v~~~a~~~l~n 312 (384)
.... .++++.+..+.. ..+..+...++.+|..=|.. ...... +...+++.|...++ ++++. ++..|+-+|.-
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 3333 788899999998 78888999999998876544 334434 44456899999995 55555 78888777653
No 211
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.10 E-value=1.4 Score=36.33 Aligned_cols=141 Identities=19% Similarity=0.157 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcC-Cch----hHHHHHh------cCChHHHHH-hhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714 134 LQFEAAWALTNVASG-TSE----HTRVVIE------HGAVPMFVQ-LLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS 201 (384)
Q Consensus 134 ~~~~a~~~L~nl~~~-~~~----~~~~i~~------~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~ 201 (384)
+|..|+.+|..++.. ++. ....++- .+.-+.|+. ++.++++.+|..|+.+|..+-.+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566677777766664 111 1111221 123344444 5678899999999999999875543221111111
Q ss_pred C-------------------ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCC--ChhhhhchHHHHHHhhccCCHhH
Q 016714 202 G-------------------ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPT--PFEQVKPALPILQRLIHLNDEEV 260 (384)
Q Consensus 202 g-------------------~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~~~~L~~lL~~~~~~i 260 (384)
+ ....|+..|....+..+...++.++..|....|-. .......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 23345666655667788889999999999886543 33444667777778888999999
Q ss_pred HHHHHHHHHHhccC
Q 016714 261 LTDACWALSYLSDG 274 (384)
Q Consensus 261 ~~~a~~~l~~l~~~ 274 (384)
+..++.+++-+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887654
No 212
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.98 Score=43.35 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=94.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 016714 82 GVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEF-LGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG 160 (384)
Q Consensus 82 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g 160 (384)
++.+.++-.+..++-.+.--..+. . ..|++..++.. .++.+ .+++..|.-+|+-+|..++ .
T Consensus 524 ll~d~ds~lRy~G~fs~alAy~GT--g------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~---------~ 585 (926)
T COG5116 524 LLYDKDSILRYNGVFSLALAYVGT--G------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR---------D 585 (926)
T ss_pred HhcCchHHhhhccHHHHHHHHhcC--C------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCc---------c
Confidence 444556666666555554333322 1 24677788777 56666 7999999999999988633 4
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714 161 AVPMFVQLLS-SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239 (384)
Q Consensus 161 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (384)
.++..+.+|. +.+..++...+.+||-.|...... . +++. ++.|..+...-++..|+-+++.+.......-.
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~di-L~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----ATDI-LEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HHHH-HHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 5666777775 578999999999999888655321 1 2233 33333666666777777777766654333333
Q ss_pred hhhhchHHHHHHhhccC
Q 016714 240 EQVKPALPILQRLIHLN 256 (384)
Q Consensus 240 ~~~~~~~~~L~~lL~~~ 256 (384)
..+.++...+.+++...
T Consensus 658 p~v~~I~k~f~~vI~~K 674 (926)
T COG5116 658 PNVKRIIKKFNRVIVDK 674 (926)
T ss_pred hhHHHHHHHHHHHHhhh
Confidence 44466666666666443
No 213
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.08 E-value=0.56 Score=46.09 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714 219 MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298 (384)
Q Consensus 219 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~ 298 (384)
+.+-++..+..|-..+ +....+.+.+-.+++...+.+..++..+|..|..+.+...+ ++.-+-.++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhcc
Confidence 4444444444444332 23346688888888989999999999999999999874322 22223346677888888888
Q ss_pred ChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHH
Q 016714 299 SATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISN 355 (384)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n 355 (384)
.+.|+..|+.+|+.+=..+ ++. ..+...+..++++.++++||+.|...+.+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEE------CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 9999999999999986321 111 24566788888887789999986555443
No 214
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.83 E-value=3.4 Score=34.42 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=93.2
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
-++.+++...+++..++..|+..+.-++...=-.|.. .+|.++.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 3678888888999999999999999777654223333 5899999999988 99999999999999875554444
Q ss_pred HHHhcCChHHHHHhh---cCC-CHHH---HHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-------hhHHH
Q 016714 155 VVIEHGAVPMFVQLL---SSG-SDDV---REQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-------KLSML 220 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL---~~~-~~~v---~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-------~~~~~ 220 (384)
.-...| +..-..+- ..+ .... ....+..|..+...+...|..+ +..|++.+.... ...-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 333333 22222221 111 1111 4455666667776665565554 446666664322 33445
Q ss_pred HHHHHHHhhhhcC
Q 016714 221 RNATWTLSNFCRG 233 (384)
Q Consensus 221 ~~a~~~L~~L~~~ 233 (384)
....++..||+.-
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 5666666777765
No 215
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=4.2 Score=40.69 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=103.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (384)
..+.+-.++++....+.-.|+.++.++....+. . +.. .+..|--++ +.+...++-.|..+|..++...|...
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~-l~p--avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v-- 317 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E-LAP--AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAV-- 317 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h-cch--HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccc--
Confidence 345566677777888888999998888755431 1 111 333333344 67777788889999998888765322
Q ss_pred hhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
..+-.-|-.++...+-.+...|...+.. .+.+..+..+.+. +...+.-++++..-+...|++++++.-...
T Consensus 318 --~~cN~elE~lItd~NrsIat~AITtLLK--TG~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~fp~k--- 388 (865)
T KOG1078|consen 318 --TVCNLDLESLITDSNRSIATLAITTLLK--TGTESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKFPRK--- 388 (865)
T ss_pred --cccchhHHhhhcccccchhHHHHHHHHH--hcchhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhccHH---
Confidence 2223334445555555555544444433 3444444444322 444454455555555666666666554211
Q ss_pred HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~ 366 (384)
..+.++.|..+|......+-++...-++..++..++++-..
T Consensus 389 -----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~ 429 (865)
T KOG1078|consen 389 -----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER 429 (865)
T ss_pred -----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH
Confidence 12344555555554435566666666666666555544333
No 216
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.47 E-value=0.36 Score=47.34 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=80.7
Q ss_pred HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714 115 KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
-.|.+..++....+.+ ..+++.++.+|..+... .......+-.+....+..-+.+..+.++.+|+.+|+.+=++...
T Consensus 83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 3466777788777877 79999999999998874 33344444446677777777788899999999999999754322
Q ss_pred hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh
Q 016714 195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS 228 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~ 228 (384)
-+..+...+..++.+++++++++.++..+.
T Consensus 160 ----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 ----EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 133467788899988899999998876554
No 217
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.38 E-value=4.6 Score=39.91 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=143.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
-.++..+.-.+.+.+..-...|.+.+ +.--+.++..-++|.|+..+..++...-....+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l----~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRL----DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence 34444555556666555555555432 222344566677777777776554112222222333333332 12
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 157 IEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
.+.+.+|.|++++.+.+..+|-..+.-+-++... ....+++.-+++.+..-+ .+.+..++...+.++..|+..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 4567889999999998888887666555555433 334456666777777777 677777888888777777653211
Q ss_pred CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCC-hHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 237 TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGV-CPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~-~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
. ..-...+..+.++-..++..++....-|++.++.+..... ..++ +..+..-+.++-..-+..+.+.+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 1223455555555455567788888888888776533221 2222 3334444555555566666666554433
Q ss_pred CChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 316 GDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 316 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
.-+.. =+...++|.+..+.-++ +..+|..|--++...-
T Consensus 477 ~~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 477 YFDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccchh---hhhhhccccccccccCc-ccchhhHHHHHHHHHH
Confidence 22211 12234666666666666 5556655555544443
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.36 E-value=2.2 Score=42.24 Aligned_cols=127 Identities=20% Similarity=0.149 Sum_probs=87.5
Q ss_pred CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHh-hccCCHhHHHHHHHHHHHhccCChHHH
Q 016714 202 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRL-IHLNDEEVLTDACWALSYLSDGPNDKI 279 (384)
Q Consensus 202 g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~l-L~~~~~~i~~~a~~~l~~l~~~~~~~~ 279 (384)
.+++.|...+ .+.+..++..++..+..+...-+ ...+ ..++|.+-.+ +.+.+..++.+++-|++.+.+.-
T Consensus 389 ~IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l---- 460 (700)
T KOG2137|consen 389 KILPLLYRSL-EDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL---- 460 (700)
T ss_pred HHHHHHHHHh-cCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH----
Confidence 3566666666 67788888888888887776532 3333 5677776655 46678899999999999997321
Q ss_pred HHHHHcCChHHHHH---hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 280 QAVIEAGVCPRLVE---LLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 280 ~~~~~~g~~~~L~~---lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
-...+++.+.. .....++.+....+++.-++....... ..++.+.++|.+..+...+
T Consensus 461 ---D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 461 ---DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred ---HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 12233444444 445678888888888888887654443 4456678899988888776
No 219
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.36 E-value=1.3 Score=44.56 Aligned_cols=194 Identities=18% Similarity=0.126 Sum_probs=107.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHhhhCCCCc
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS----GSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
.+..+.+++.... --..+|++.|..+......-... .+..+..++.+ .++.++..|+.+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556667776644 22334555555554432232322 34445555543 5678888899898888632110
Q ss_pred ---------hhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC---CH
Q 016714 194 ---------CRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN---DE 258 (384)
Q Consensus 194 ---------~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~---~~ 258 (384)
..........++.+...+. ...+.+-...++.+|.|+-.. ..++.+..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1122223346777777775 233556777888999998653 5778888888666 67
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHH
Q 016714 259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQL 336 (384)
Q Consensus 259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~l 336 (384)
.++..|+|++..+....++.+ .+.+.+++.+ .+.++|..|+.+|-. .+|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence 899999999999877766543 3556666633 456788888766554 22322 134556667
Q ss_pred hccCCchhHH
Q 016714 337 LTQNHKKSIK 346 (384)
Q Consensus 337 l~~~~~~~v~ 346 (384)
+....+..+.
T Consensus 601 l~~E~~~QV~ 610 (618)
T PF01347_consen 601 LWNEPSNQVA 610 (618)
T ss_dssp HTT-S-HHHH
T ss_pred HhhCchHHHH
Confidence 7655344443
No 220
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.28 E-value=5.5 Score=35.15 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=129.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC--CCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 79 MVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR--HDMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 79 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
|=..|.++|+..+..|+..|..++..- ++ . .+...-+..|++++.+ .| ......++..+..+.....-.....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~l--p~-~-~L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERL--PP-D-FLSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhC--CH-h-hccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhhH
Confidence 345678899999999999999888743 21 1 1222235666666543 33 4455555666666654322111110
Q ss_pred HhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHH--hcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 157 IEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVL--SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 157 ~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~--~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
. ..+..+..-.. +.....|..+...|..+..+.. +.+. ..+.+..++..+....|+.-+..+...+..+..
T Consensus 79 ~--~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 79 V--KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred H--HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 0 12222222111 2345677777888887765532 2222 234677788888667788888888888777776
Q ss_pred CCCCCChhhhhchHHHHHHhh----c-c-CCH--hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHH
Q 016714 233 GKPPTPFEQVKPALPILQRLI----H-L-NDE--EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLI 304 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL----~-~-~~~--~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~ 304 (384)
.-+. ......+++.+..+. . . +|+ -...+...+|..+....+... .-.+|.|++-|.++.+.++.
T Consensus 154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHH
Confidence 6442 222233444433332 1 1 122 234455555655554444322 34589999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 016714 305 PALRTVGNIVTGD 317 (384)
Q Consensus 305 ~a~~~l~nl~~~~ 317 (384)
.++.+|...+...
T Consensus 227 D~L~tL~~c~~~y 239 (262)
T PF14500_consen 227 DSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999887543
No 221
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.17 E-value=0.49 Score=39.31 Aligned_cols=109 Identities=11% Similarity=0.188 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHH-HHhcCCchhHHHHHhcCChHHHHHhhcC---------CCHHHHHHHHHHHHhhh
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALT-NVASGTSEHTRVVIEHGAVPMFVQLLSS---------GSDDVREQAVWALGNVA 188 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~ 188 (384)
...+++.|.+..... ..+.-|. .|-..+......|++.|++..|+.+|.. .+..+...++.||..|.
T Consensus 68 p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 445677776544221 2222222 2223345677888889999999998853 45678889999999988
Q ss_pred CCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhh
Q 016714 189 GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFC 231 (384)
Q Consensus 189 ~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~ 231 (384)
.........+...+.+..|+..| .+++..++..++..|+.+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 76665555555677888888888 6778889999999998887
No 222
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.02 E-value=4.4 Score=38.93 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=107.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC---hHHHHHHHHHHHHHhcCCch
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM---PQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~---~~~~~~a~~~L~nl~~~~~~ 151 (384)
....+.+.+.+++...+..|+..+..+ |.+ ......++...++..|.+++.+++. .++...++.++..+-....
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 346778888999999999999888876 433 5668889999999999999988762 3444455555554443221
Q ss_pred hHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhh
Q 016714 152 HTRVVIEHGAVPMFVQLLS--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSN 229 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~ 229 (384)
.....+....|.....+.. ..+..+...|+..|-++...+...++.+.+.--+..|+..+ +..+..+...+...+-.
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 1111122222333333332 24566777888888888887777788888888899999999 66677777777777777
Q ss_pred hhcCCCC
Q 016714 230 FCRGKPP 236 (384)
Q Consensus 230 L~~~~~~ 236 (384)
+....|+
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7766543
No 223
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.72 E-value=8.6 Score=35.93 Aligned_cols=257 Identities=16% Similarity=0.187 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc----C------CCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 85 SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG----R------HDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~----~------~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
+.+.+.+..|-..|.+.+....+.+-...+.. -++.+++++. . +.+..+..+|+.+|+.+... ++...
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~-k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD-KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHh
Confidence 34555666666666666554322222222211 1444444443 1 11268889999999998874 44444
Q ss_pred HHHhcC---ChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---c-cchhHHHHHHHH
Q 016714 155 VVIEHG---AVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---E-HSKLSMLRNATW 225 (384)
Q Consensus 155 ~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~-~~~~~~~~~a~~ 225 (384)
.+-+.. .+...+..+.+ .+..+...++|+|..---. ..++....+..++..+. + -....+....+.
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 433322 34555555543 4567888888887753222 22334444555555442 2 335567788888
Q ss_pred HHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc--CCh-HHHH---HHHHc----C-----ChHH
Q 016714 226 TLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD--GPN-DKIQ---AVIEA----G-----VCPR 290 (384)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~--~~~-~~~~---~~~~~----g-----~~~~ 290 (384)
++.+|....|..-......-+|.++..+-+....++..|..++..+.. +.. .... ...+. + +.+.
T Consensus 157 i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 236 (372)
T PF12231_consen 157 IYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHH
Confidence 888888875544333445577777777766677776665554444332 111 1111 11111 2 2334
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHcCchHHHHHHhccCCchhHHHHHH
Q 016714 291 LVELLMHPSATVLIPALRTVGNIVTGDDAQ-TQFVIDNGVLPCLYQLLTQNHKKSIKKEAC 350 (384)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~ 350 (384)
|..++.+.+.....+-+|..--..-++... ....+ ...+...-..+.++ ++.+|.+|.
T Consensus 237 L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~-d~~~k~~A~ 295 (372)
T PF12231_consen 237 LKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSS-DPQVKIQAF 295 (372)
T ss_pred HHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCC-CHHHHHHHH
Confidence 555555534333444444333333333211 11111 13455555667777 888888863
No 224
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.68 E-value=5.7 Score=36.95 Aligned_cols=210 Identities=14% Similarity=0.136 Sum_probs=112.7
Q ss_pred cCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCCch
Q 016714 74 ESIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-HDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 74 ~~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
+.+..++..+.++ ....+..++-.|..-+.. ...+..+...|.+..+++.+.. ++++..-..++.++.-++.+ ..
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~ 97 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GL 97 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Cc
Confidence 4567788888743 356777777666655442 5677888899999999999944 44234444455555555553 22
Q ss_pred hHHHHHhcCChHHHHHhhc--C------------------------------------------CCHHHHHHHHHHHHhh
Q 016714 152 HTRVVIEHGAVPMFVQLLS--S------------------------------------------GSDDVREQAVWALGNV 187 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~--~------------------------------------------~~~~v~~~a~~~L~nl 187 (384)
....+.+.+....++.++. . ....-+..|..++-.+
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l 177 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL 177 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence 2222223334444455544 0 0001112233333333
Q ss_pred h--------------CCCCchhhHHHhcCChHHHHHHhcc----cc-----------hhHHHHHHHHHHhhhhcCCCCCC
Q 016714 188 A--------------GDSPSCRDLVLSSGALMPLLAQLNE----HS-----------KLSMLRNATWTLSNFCRGKPPTP 238 (384)
Q Consensus 188 ~--------------~~~~~~~~~i~~~g~i~~L~~~l~~----~~-----------~~~~~~~a~~~L~~L~~~~~~~~ 238 (384)
+ ...+.+++.+.+.|++..++..+.+ .. +......++++|-+.+...+...
T Consensus 178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq 257 (361)
T PF07814_consen 178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ 257 (361)
T ss_pred HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence 1 1122345666777888888888742 10 11234456667776665543322
Q ss_pred hhhh---hchHHH-HHHhh---ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 016714 239 FEQV---KPALPI-LQRLI---HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAG 286 (384)
Q Consensus 239 ~~~~---~~~~~~-L~~lL---~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g 286 (384)
.... .+.++. +..++ ......+...+++.+.|++.+++.....+...+
T Consensus 258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 2222 223332 22222 223355678888999999988866555554443
No 225
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.39 E-value=2.4 Score=37.52 Aligned_cols=159 Identities=20% Similarity=0.155 Sum_probs=93.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhc----CCCHHHHHHHHHHHHhhhCCCCc
Q 016714 120 PRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLS----SGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 120 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
..+...+..=. ++-++-++-.+.-++.+ +.....+...+ ....+..++. +..+..+-.++++++|+.....
T Consensus 66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~- 142 (268)
T PF08324_consen 66 ILLLKILLSWP-PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP- 142 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHhCC-CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence 34444443322 34566677777666553 44333343322 2344444433 2567888899999999998766
Q ss_pred hhhHHHhcC--ChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhh-c-cCCHhHHHHH
Q 016714 194 CRDLVLSSG--ALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPILQRLI-H-LNDEEVLTDA 264 (384)
Q Consensus 194 ~~~~i~~~g--~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~lL-~-~~~~~i~~~a 264 (384)
.+..+.... .+...+..+.... +..++..++.++.|++... ..........++..+...+ . ..|++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 455555432 2333333332332 6788889999999998653 1112222334566666633 2 3689999999
Q ss_pred HHHHHHhccCChHHHHH
Q 016714 265 CWALSYLSDGPNDKIQA 281 (384)
Q Consensus 265 ~~~l~~l~~~~~~~~~~ 281 (384)
+-+++++...+....+.
T Consensus 223 LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhccChhHHHH
Confidence 99999999776654443
No 226
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.34 E-value=0.81 Score=33.09 Aligned_cols=79 Identities=9% Similarity=0.075 Sum_probs=61.3
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHH
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRA-QIQV 366 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~i~~ 366 (384)
+...+..|.++.+.++..++..|..++.... ....--.+++..+...+.++ ++.|--.|.-++..++...++ .+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4556677888899999999999999987665 11122246788899999999 899999999999999985554 6666
Q ss_pred HHh
Q 016714 367 HDS 369 (384)
Q Consensus 367 l~~ 369 (384)
+++
T Consensus 82 L~~ 84 (92)
T PF10363_consen 82 LLD 84 (92)
T ss_pred HHH
Confidence 654
No 227
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=15 Score=36.92 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=93.9
Q ss_pred cCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHhc--CCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHh
Q 016714 116 AGVVPRFVEFLGRH-------DMPQLQFEAAWALTNVAS--GTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGN 186 (384)
Q Consensus 116 ~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 186 (384)
.|+++.+.+.|... +++.-.+.|++.+.++.+ .......-+.+.-+++.++..++++..-++..++..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 48899999999421 224445667888888766 334444445555677888888899889999999999999
Q ss_pred hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHH-HHHHhh---ccCCHhHHH
Q 016714 187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALP-ILQRLI---HLNDEEVLT 262 (384)
Q Consensus 187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~-~L~~lL---~~~~~~i~~ 262 (384)
+..|-+ +..+-..+.+...+++ .+++..+...|+-++.-+..+. .....+...+| .+-++| ..-+.++..
T Consensus 487 ~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 487 IEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 955543 3333334566667777 4577778888888888887764 22233333333 333333 333455666
Q ss_pred HHHHHH
Q 016714 263 DACWAL 268 (384)
Q Consensus 263 ~a~~~l 268 (384)
.++..+
T Consensus 561 ~vMe~f 566 (970)
T COG5656 561 MVMESF 566 (970)
T ss_pred HHHHHH
Confidence 555544
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.91 E-value=0.85 Score=32.97 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=56.8
Q ss_pred HHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 016714 246 LPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA 319 (384)
Q Consensus 246 ~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 319 (384)
+......|+++.+.++..++..|..|..... .....-.+++..+...|.++++.|--.|+.+++.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445566778888899999999999998766 11222346788889999999999999999999999976654
No 229
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.80 E-value=8.7 Score=33.90 Aligned_cols=215 Identities=14% Similarity=0.101 Sum_probs=120.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHhhhCCCCchhhHH
Q 016714 121 RFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS--GSDDVREQAVWALGNVAGDSPSCRDLV 198 (384)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~i 198 (384)
.|=..|.+++ +.+|..|..+|+.+...-+... ....-+..|+.++.+ ++......++.++..+.........
T Consensus 3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~-- 76 (262)
T PF14500_consen 3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE-- 76 (262)
T ss_pred chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh--
Confidence 3556778887 8999999999998776534221 222234555555443 4455555567777777643321111
Q ss_pred HhcCChHHHHHHhccc-----chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhc
Q 016714 199 LSSGALMPLLAQLNEH-----SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLS 272 (384)
Q Consensus 199 ~~~g~i~~L~~~l~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~ 272 (384)
....+++.+.+. .....+..+...+..+...........-...+..+++.+.. .||.-+..+...+..+.
T Consensus 77 ----~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 77 ----SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred ----hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 223333333221 12345556666666666553211111224566666666654 47877777777766665
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCC---------C-Ch--hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 273 DGPNDKIQAVIEAGVCPRLVELLMH---------P-SA--TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 273 ~~~~~~~~~~~~~g~~~~L~~lL~~---------~-~~--~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
..-+- ....+-+.+.+.. + ++ -.+..--..|.+..+.++.... -++|.|++=|.++
T Consensus 153 ~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~ 220 (262)
T PF14500_consen 153 QEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST 220 (262)
T ss_pred Hhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC
Confidence 43221 1223333333321 1 22 2334444555555555554433 4788899999998
Q ss_pred CchhHHHHHHHHHHHHhc
Q 016714 341 HKKSIKKEACWTISNITA 358 (384)
Q Consensus 341 ~~~~v~~~a~~~L~nl~~ 358 (384)
.+.+|..+.-+|..++.
T Consensus 221 -~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 -SPSVKLDSLQTLKACIE 237 (262)
T ss_pred -CcHHHHHHHHHHHHHHH
Confidence 88899999999998886
No 230
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.62 E-value=5.8 Score=38.16 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=106.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCC
Q 016714 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTP 238 (384)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~ 238 (384)
...+...+.+++..-+..++.-|..++.+.. +...++...++..|..++.+.. ..+++...+.+++.+-...- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 3456667777777777778888888887766 4566677888999999995543 34566666666666665432 11
Q ss_pred hhhh-hchHHHHHHhh--ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 239 FEQV-KPALPILQRLI--HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 239 ~~~~-~~~~~~L~~lL--~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
...+ ..++-....+. ...+..+...|+..+-++..+++...+.+.+.--+..|+..|...+..++..|+..+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1111 22222222222 33456788889999999988888778888888889999999998888888888887777764
Q ss_pred CC
Q 016714 316 GD 317 (384)
Q Consensus 316 ~~ 317 (384)
..
T Consensus 243 ~a 244 (713)
T KOG2999|consen 243 KA 244 (713)
T ss_pred hC
Confidence 43
No 231
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.62 E-value=1.1 Score=42.28 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=85.9
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCCc-hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh-hhhchHH
Q 016714 170 SSGSDDVREQAVWALGNVAGDSPS-CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE-QVKPALP 247 (384)
Q Consensus 170 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~ 247 (384)
.+++..++..|+..|+|.+...|. ++.. ..-.+..++.-|.+..+.++.-.+..+|..+.....+.... ...++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 357889999999999999988543 2221 12256667777756667888888888888777654332222 2234444
Q ss_pred HHHHhhccCCHhHHHHHHHHHHHhccCChHH-HHHHHH--cCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 248 ILQRLIHLNDEEVLTDACWALSYLSDGPNDK-IQAVIE--AGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 248 ~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~-~~~~~~--~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
.+..+..+.+++.+..+...++.|+...... ...+.+ .+-...++-.|.++++.+ ..||+.....+
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c 414 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTC 414 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhc
Confidence 5677788899999999988888776532211 111221 112233333445566544 34555554444
No 232
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.17 E-value=3.5 Score=40.79 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=95.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcC-Cc----hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714 120 PRFVEFLGRHDMPQLQFEAAWALTNVASG-TS----EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 120 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
|.+..-|+-.+ ..+|..|+..+.+.--- ++ +..+.+++ .-...+..+|+++-+.++..|...++.+....-.
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe- 253 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE- 253 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-
Confidence 33444555567 79999999999886321 12 33444554 3467889999999999999999888877643211
Q ss_pred hhHHHhcCC----hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHH
Q 016714 195 RDLVLSSGA----LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSY 270 (384)
Q Consensus 195 ~~~i~~~g~----i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~ 270 (384)
++...+ +..++.-+..++..+++......|..+..++ ........++|.+-..|+.+...++..+...|..
T Consensus 254 ---~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 254 ---MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred ---HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 111112 2233333333445677778888888887763 2234446677888888888889999888888777
Q ss_pred hcc
Q 016714 271 LSD 273 (384)
Q Consensus 271 l~~ 273 (384)
+-.
T Consensus 329 ik~ 331 (1005)
T KOG1949|consen 329 IKA 331 (1005)
T ss_pred HHh
Confidence 643
No 233
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=1.7 Score=38.52 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=97.8
Q ss_pred HHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHH
Q 016714 205 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIE 284 (384)
Q Consensus 205 ~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~ 284 (384)
...+..| .+.+......++..+..|+...++.-......++..+++-+.+....+-..||-+++.+...-...+..
T Consensus 91 ~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--- 166 (334)
T KOG2933|consen 91 KQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--- 166 (334)
T ss_pred HHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445555 666777778888888888887665445555677778888888888888899999998887665444333
Q ss_pred cCChHHHHHhcCC----CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 285 AGVCPRLVELLMH----PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 285 ~g~~~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
-++.++..|.+ ++--+++.|-.+|..++..-..+ .+++.|...+.+. .+.++..++.+..+...
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 23444444422 33457788888888877543222 2567788888888 89999999998888875
No 234
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.01 E-value=6.3 Score=39.24 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=89.4
Q ss_pred ChHHHHHhhcC----CCHHHHHHHHHHHHhhhC----CCCchhhHHHhcCChHHHHHHhcc---cchhHHHHHHHHHHhh
Q 016714 161 AVPMFVQLLSS----GSDDVREQAVWALGNVAG----DSPSCRDLVLSSGALMPLLAQLNE---HSKLSMLRNATWTLSN 229 (384)
Q Consensus 161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~i~~~g~i~~L~~~l~~---~~~~~~~~~a~~~L~~ 229 (384)
.+..+..++.+ .++.++..|+.+++++.. +.+.+...+ ....++.+...|.. ..+.+-...++.+|.|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 34555666654 456788888888888763 222111111 12255566665532 2344445667777777
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhc---cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC--CChhhHH
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLIH---LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH--PSATVLI 304 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~--~~~~v~~ 304 (384)
+... ..++.+..++. ..+..++..|+|+|..++...+..+ -+.+.+++.+ .++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 7664 34455555554 2346799999999999876555433 3455666543 4567887
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhH
Q 016714 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSI 345 (384)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v 345 (384)
.|+..|-.. +|.. ..+..+...+....+..|
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHH
Confidence 777665432 2222 134455666665534444
No 235
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.83 E-value=16 Score=35.26 Aligned_cols=247 Identities=13% Similarity=0.133 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714 89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL 168 (384)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 168 (384)
..+..|+..+...+..-+-.++..+. ...-+++.....++.|..+...|..+..+......... . ..+-.+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW-----~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-~---~fF~~I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIW-----YAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-A---EFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-H---HHHHHH
Confidence 45566666666665543233333322 22334555554467888888888888776443211111 0 111111
Q ss_pred hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--------------------------hhHHHHH
Q 016714 169 LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--------------------------KLSMLRN 222 (384)
Q Consensus 169 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--------------------------~~~~~~~ 222 (384)
-....++-...-+.+|..|+.++... + ..+.++.+.|..-+...- +......
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 22344444556667777777766654 2 245556666666552111 2223444
Q ss_pred HHHHHhhhhcCC-CCCChhhhhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHHHHHhcCC
Q 016714 223 ATWTLSNFCRGK-PPTPFEQVKPALPILQRLI-HLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 223 a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
.+..+.|+.... .......+.+++..+..+. .+.++.....++..+-.+..+ +.+.... ++..|....
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~-----~i~vLCsi~-- 226 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSP-----CIEVLCSIV-- 226 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHH-----HHHHHhhHh--
Confidence 555555555554 3334444555666555553 233333344444444333322 2222111 123333332
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-----CchhHHHHHHHHHHHHhcCC
Q 016714 298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-----HKKSIKKEACWTISNITAGN 360 (384)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~ 360 (384)
+......++-.++.||+...-.+ -.+..|..+|..+ .+..+-+-|...+.-+..+.
T Consensus 227 ~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 227 NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 22356677888888888533222 1345567777322 13445566777777776654
No 236
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=90.80 E-value=6.6 Score=39.72 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=104.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.|..++..|.|.+..+...+-..+...+..++.+ + ++..|+++.-..++. .|+.+|..+-. +..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~l~~y~~~t~s~----~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP-W-------LVNGLVDYYLSTNSQ----RALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-H-------HHHHHHHHHhhcCcH----HHHHHHHhcCC--ccHH-
Confidence 5788999999999888888888888777654222 1 366777765444422 23344443321 2111
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 155 VVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
..+..|-.++.. +.-+-.++..|+.+....|..-..+.+...+..|+++|..+.+..++..|+.+|..|.=.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 123344444543 5677889999999999888777888999999999999988888888888888887776544
Q ss_pred CCCChhhhhchHHHHHHhh
Q 016714 235 PPTPFEQVKPALPILQRLI 253 (384)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL 253 (384)
|.........++..+..++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4433333344445444444
No 237
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.68 E-value=2.1 Score=42.33 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=91.6
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCC
Q 016714 159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTP 238 (384)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~ 238 (384)
..++|.|..-+++.+..+++.++..+..++..-+ -..+..-++|.+-.+.....+..++.+++-++..+... .+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence 3567788888888999999999999999874322 12233345666666655677888999999999888832 22
Q ss_pred hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCC
Q 016714 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPS 299 (384)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~ 299 (384)
...+...++.+.+.....|+.+....+.+...+....... ..+..+.++|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 2233344445556667788998888888777766543332 24455678888888876654
No 238
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.61 E-value=7.1 Score=32.48 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=54.3
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCch
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
.++.++++..+++ ..++..|+.++.-+....- +--..++|.|+.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 3666777777777 8999999999987655210 001236899999999999999999999999998766543
No 239
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.45 E-value=5.3 Score=37.24 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc------CCCHHHHHHHHHHHHhhhCCCC
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS------SGSDDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~ 192 (384)
.+.+-.-++.++...-+..|+..|..++....+....++ ...+-.++. +.+..-++.|+..++.++....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 333333343333346778888899888864222222222 122333333 3567888999999999986553
Q ss_pred chh------------hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhH
Q 016714 193 SCR------------DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEV 260 (384)
Q Consensus 193 ~~~------------~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i 260 (384)
..+ ..+....++|.|. -..+..+-++..|++.+..+-.. ........++|.++.+|.+++.-+
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~---l~~~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ---LPKEQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG---S-HHHHHHHHHHHHHHTTSS-HHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCCcch
Confidence 211 1122222333332 11233455777888888877664 234566889999999999999999
Q ss_pred HHHHHHHH
Q 016714 261 LTDACWAL 268 (384)
Q Consensus 261 ~~~a~~~l 268 (384)
..+|+.||
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 99998875
No 240
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.37 E-value=2.1 Score=45.93 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=88.6
Q ss_pred HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714 221 RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~ 300 (384)
.++.|....++...+ -.....+++..++..|..+...++..|+.||+.+...++... ....+-..+-.-+.+.+.
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchh
Confidence 345555555554422 112235677778888888889999999999999998876421 222334445555667778
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714 301 TVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR 361 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 361 (384)
.|++.|+-.+|..+...++....+. +.+..-+.++ .-.|||.+..++..|+..+|
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt-gvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT-GVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC-chhHHHHHHHHHHHHHHhCC
Confidence 8999999999998887776655433 3455555555 67888888888888886444
No 241
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.31 E-value=2.7 Score=37.59 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=76.6
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH-HHHHhcCChHHHHH----hhc--------CCCHHHHHHHHHHH
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-RVVIEHGAVPMFVQ----LLS--------SGSDDVREQAVWAL 184 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 184 (384)
++|.++.++++.+ +.++..++.+|..+....+... ..+.+.|..+.+-. ++. .++..+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999988 9999999999999988544333 33556675544433 333 35567888888888
Q ss_pred HhhhCC----CCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC
Q 016714 185 GNVAGD----SPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN 256 (384)
Q Consensus 185 ~nl~~~----~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~ 256 (384)
..++.- +...+......-.-+.++.-+.... .+.+....+..+..+...-........+.++|.+.+.+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 887431 1111221111111111222221222 35555555555555554422233333456666666655543
No 242
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.25 E-value=17 Score=34.56 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=114.9
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCCc---hhHHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHhhhCCC
Q 016714 122 FVEFLGRHDMPQLQFEAAWALTNVASGTS---EHTRVVIEHGAVPMFVQLLSS-------GSDDVREQAVWALGNVAGDS 191 (384)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~ 191 (384)
+..++...+ ..-++.|+...+..+.+.+ ..++.+.+.-+++.+-++|.+ ++.-.+..++..|.-+|.+.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 556666655 6889999999999988633 456668887788888888875 23345666777888888765
Q ss_pred Cch-hhHHHhcCChHHHHHHhcccchhH------HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC----HhH
Q 016714 192 PSC-RDLVLSSGALMPLLAQLNEHSKLS------MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND----EEV 260 (384)
Q Consensus 192 ~~~-~~~i~~~g~i~~L~~~l~~~~~~~------~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~----~~i 260 (384)
+-. ...+++ .||.|+..+....|++ +...+-.+|..++...+........|.++.+.++-.-.+ ..+
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 421 222333 6888899886555444 788888899988888555555556899998887654333 222
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 016714 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (384)
...+...+..=.+.-.+....+.. ++..+..-+...+...+-..|+.|..+....
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~ 227 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSE 227 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC
Confidence 222221111111111122222211 1334444344445556667888888665433
No 243
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.14 E-value=11 Score=34.62 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=108.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-C-CHHHHHHhhcCCC----C--------hHHHHHHHH-
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKA-G-VVPRFVEFLGRHD----M--------PQLQFEAAW- 140 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g-~i~~Lv~lL~~~~----~--------~~~~~~a~~- 140 (384)
++.+.+.|.++.......+++.|..+++.........+... + -.+.|-.++.... . +++|.....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 57778888888888888999999999985535666666644 2 2445666664221 0 177777665
Q ss_pred HHHHHhcCCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHh-hhCCC---CchhhHHHhcCChHHHHHHhcccc
Q 016714 141 ALTNVASGTSEHTRVVIE-HGAVPMFVQLLSSGSDDVREQAVWALGN-VAGDS---PSCRDLVLSSGALMPLLAQLNEHS 215 (384)
Q Consensus 141 ~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~n-l~~~~---~~~~~~i~~~g~i~~L~~~l~~~~ 215 (384)
+|..+..+++..+..+++ .+.+..+.+.|..++.++....+.+|.. +..+. ...+-.+.....+..|..+. ...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-ccc
Confidence 455566677777777776 4568888888988999999999999985 44443 22344455555677777755 444
Q ss_pred hh----HHHHHHHHHHhhhhcCC
Q 016714 216 KL----SMLRNATWTLSNFCRGK 234 (384)
Q Consensus 216 ~~----~~~~~a~~~L~~L~~~~ 234 (384)
++ .+...+-..|..+|...
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCC
Confidence 44 66677777777777653
No 244
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.10 E-value=2.5 Score=34.87 Aligned_cols=139 Identities=20% Similarity=0.221 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhhCC-CCc-h---hhHHH------hcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CC-------
Q 016714 176 VREQAVWALGNVAGD-SPS-C---RDLVL------SSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PP------- 236 (384)
Q Consensus 176 v~~~a~~~L~nl~~~-~~~-~---~~~i~------~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~------- 236 (384)
+|..|+.+|..++.. ++. . =..++ ..+.-..|+..+..++++.++..++.++..|-.+. +.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566677777776654 211 0 01111 22345667777778889999999999998887763 10
Q ss_pred ----CChhh--------hhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChHHHHHHHHcCCh----HHHHHhcCCCC
Q 016714 237 ----TPFEQ--------VKPALPILQRLIHLN-DEEVLTDACWALSYLSDGPNDKIQAVIEAGVC----PRLVELLMHPS 299 (384)
Q Consensus 237 ----~~~~~--------~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~----~~L~~lL~~~~ 299 (384)
..+.- +...-..|...|+.+ +..+....+.++..+....+... .+.|++ ..+..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r---L~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR---LPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh---cCHhHHHHHHHHHHHHHhcCC
Confidence 01100 122233445555444 67889999999999998866432 223444 44555667889
Q ss_pred hhhHHHHHHHHHHhhcCC
Q 016714 300 ATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 300 ~~v~~~a~~~l~nl~~~~ 317 (384)
+.++..++.++|.+.+..
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999987643
No 245
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.78 E-value=1.7 Score=42.89 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH
Q 016714 172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR 251 (384)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ 251 (384)
.++.++..|..+|..+..-+..+ +. ..+|.++..+..+++|.++.++.-.+..+...-.. .+...-.+|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f---c~--ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF---CS--EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADEHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH---HH--HHHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHHHHHHHHH
Confidence 68899999999999876544322 22 25788999998899999999988777766554211 12344567888
Q ss_pred hhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714 252 LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 252 lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
-|...+..++..++-++.+|.-...-. -.|-++.++.+|.+++..+..-|=..+..++..+...
T Consensus 979 rL~De~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence 888999999999999999987654322 2477899999999999999888888888888765543
No 246
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.55 E-value=5.3 Score=40.60 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=100.8
Q ss_pred HHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChH--HHHHHhcccchh
Q 016714 141 ALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALM--PLLAQLNEHSKL 217 (384)
Q Consensus 141 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~--~L~~~l~~~~~~ 217 (384)
+|.+++..+++....+++.|++..+..++.. .+.++...++..++|++...+ .++.......+. .+-..+....+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6778888899999999999999999999986 678899999999999986443 112211111111 223334334444
Q ss_pred HHHHHHHHHHhhhhcCCCCCC----hh--------------------hhhchHHH-HHHhhc-cCCHhHHHHHHHHHHHh
Q 016714 218 SMLRNATWTLSNFCRGKPPTP----FE--------------------QVKPALPI-LQRLIH-LNDEEVLTDACWALSYL 271 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~----~~--------------------~~~~~~~~-L~~lL~-~~~~~i~~~a~~~l~~l 271 (384)
+....++..|+.+....+... .. .....+.. +..++. +..+..+..|+|++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 666777777777766532100 00 00111111 333332 34566788899999999
Q ss_pred ccCChHHHHHHHHcCChHHHHHhcC
Q 016714 272 SDGPNDKIQAVIEAGVCPRLVELLM 296 (384)
Q Consensus 272 ~~~~~~~~~~~~~~g~~~~L~~lL~ 296 (384)
+...++....+.+.|+++.+...-.
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcch
Confidence 9988877777788888888776653
No 247
>PRK14707 hypothetical protein; Provisional
Probab=89.29 E-value=45 Score=38.02 Aligned_cols=287 Identities=15% Similarity=0.082 Sum_probs=146.5
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 75 SIPSMVQGVW-SEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 75 ~l~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
.|..+++.+. ..+......++..|...+..+ ..-...+-..|+-..|=.+-+.++.+.+...+.++=+.++. .+..+
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~ 283 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGLR 283 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHH
Confidence 3444444443 234334445555666555543 23233333344444444444556645555555555566664 35555
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHH-hhhhc
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTL-SNFCR 232 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L-~~L~~ 232 (384)
+.+-..++-..|-.+-+-++..+...|+..|..=-.+++..+..+ +.-.+...++.|.+-++..+-+.++.+| ..|+.
T Consensus 284 ~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 284 KALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred HhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 554443333333333344677777777777776555565554332 2224455666666666655555554444 44555
Q ss_pred CCCCCChhhhhchHH-HHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHH
Q 016714 233 GKPPTPFEQVKPALP-ILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVG 311 (384)
Q Consensus 233 ~~~~~~~~~~~~~~~-~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (384)
. +..........+. .|..+-.-++......+..+|..=...+.+....+-..|+-..|-.+-+=++..+...+...|.
T Consensus 363 d-~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 363 D-PELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred C-HhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 4 3333333333344 3434444566667667776665544455555555444455555555545577777777777776
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQV 366 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~ 366 (384)
--+..+.+..+.+--.++...|--+-+-+ +..+..+|+-.|..=.+..++..+.
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a 495 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKA 495 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhh
Confidence 66665555544332223333333333344 5556655555544443334443333
No 248
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=89.26 E-value=17 Score=33.02 Aligned_cols=153 Identities=13% Similarity=0.060 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChH------------HHHHhhc------CCCHHHHHHHHHHHHhhhCCCCc
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVP------------MFVQLLS------SGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~------------~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
-++|..|+.|+.....++++.+..+++. .+| .|+..|- +.++--.--|+.+|..+..++++
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~-~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLST-LIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHT-TSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHH-HhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 6899999999999999999999888763 111 2233222 11222222344444444444444
Q ss_pred hhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----c-cCCHhHHHHHHHHH
Q 016714 194 CRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI----H-LNDEEVLTDACWAL 268 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL----~-~~~~~i~~~a~~~l 268 (384)
.|+.+..- ........+. ....++.+..+| . ..++.+...-+..|
T Consensus 131 ~Ke~al~V--------------------------~~~~~~~ge~----~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL 180 (312)
T PF04869_consen 131 AKEQALRV--------------------------TEGDESSGEE----PVTLIQTVSELLIASLRRNSDPRIQIGYLMLL 180 (312)
T ss_dssp HHHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHH
T ss_pred HHHHHHcc--------------------------cCCCCCCCCC----cccHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 43333221 0011111111 112333333332 2 34566666666666
Q ss_pred HHhccCChHHHHHHHHcC-ChHHHHHhcC---CCChhhHHHHHHHHHHhhc
Q 016714 269 SYLSDGPNDKIQAVIEAG-VCPRLVELLM---HPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 269 ~~l~~~~~~~~~~~~~~g-~~~~L~~lL~---~~~~~v~~~a~~~l~nl~~ 315 (384)
..-...++..+..+++.+ .++.|+.... +.+.-++--++..||-+..
T Consensus 181 ~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 181 IVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 666677777777777764 7888888753 2355677777777777643
No 249
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=88.98 E-value=15 Score=32.06 Aligned_cols=118 Identities=20% Similarity=0.288 Sum_probs=67.4
Q ss_pred CHHHHHHhhcC-----------CCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHH--------HHH
Q 016714 118 VVPRFVEFLGR-----------HDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD--------VRE 178 (384)
Q Consensus 118 ~i~~Lv~lL~~-----------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--------v~~ 178 (384)
++|.|+.+|.. ++ ......|+..|+.+ .+..+.|.++++++.++.. +-+
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~-~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEE-YNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcc-hHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 46666666653 22 23455555555544 2346899999999765531 122
Q ss_pred HHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC
Q 016714 179 QAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND 257 (384)
Q Consensus 179 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~ 257 (384)
....+|..+ -.|-++.|.+++.+.. +.-++.+++.+|..+....+......+.-+-..+...+..++
T Consensus 100 ~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~ 167 (249)
T PF06685_consen 100 DLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNP 167 (249)
T ss_pred HHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCc
Confidence 222222222 2345677777775444 455777889999999988665555544433344444454444
Q ss_pred Hh
Q 016714 258 EE 259 (384)
Q Consensus 258 ~~ 259 (384)
..
T Consensus 168 ~~ 169 (249)
T PF06685_consen 168 SF 169 (249)
T ss_pred hH
Confidence 44
No 250
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=88.73 E-value=0.43 Score=28.19 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=24.4
Q ss_pred HHhccCCCCCCcHHHHHhHHHHHHHHHHHhhhHHHHhhh
Q 016714 11 VRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKR 49 (384)
Q Consensus 11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR 49 (384)
.|...||+..++.+.-+||+ ...+..|.+|-+.++.-|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR~-~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERRR-EFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHHH-HHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHHH-HHHHHHHHHhHHHHHhcc
Confidence 47788998444455544443 455888888888777655
No 251
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.70 E-value=11 Score=30.71 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=69.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhcC-CCHHHHHHHHHHHHhhh---CC
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLSS-GSDDVREQAVWALGNVA---GD 190 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~ 190 (384)
..+..+..+|.+++ +.-+..++..+...+..++ .+.+.+.+ -+..++.+|+. ++..+.+.++.+|..|. .+
T Consensus 25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34666788888877 7888877777777766421 34444433 46888888887 55678888888888876 44
Q ss_pred CCchhhHHHhc---CChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCC
Q 016714 191 SPSCRDLVLSS---GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 236 (384)
Q Consensus 191 ~~~~~~~i~~~---g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (384)
.+.....+... +++..++.++.. ......++.+|..+-...|.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc
Confidence 45433333222 123333444311 34555666666666665443
No 252
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.63 E-value=3 Score=35.21 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCCc-hhHHHHHhcCChH
Q 016714 89 ALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD----MPQLQFEAAWALTNVASGTS-EHTRVVIEHGAVP 163 (384)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~g~i~ 163 (384)
.-...|+..+.-++|. ++....++++.+--.+..+|...+ .+-++..++.+++.+..+++ +..+.+....++|
T Consensus 115 nRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 115 NRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 3445566666655552 344444566654444556664332 25678888999999887544 4556666788999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhc-------CChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 164 MFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSS-------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~-------g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.+++++..+++--+..|+.+++.+.+++...+..+... ..+..++..+-+.....+...+..+...||..
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999999999899999999999998876543322211 12233333333344556667777777667665
No 253
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=88.45 E-value=18 Score=32.40 Aligned_cols=201 Identities=10% Similarity=0.100 Sum_probs=123.1
Q ss_pred HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH---HHHhcCChHHHHHhhcC-C-CHHHHHHHHHHHHh
Q 016714 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR---VVIEHGAVPMFVQLLSS-G-SDDVREQAVWALGN 186 (384)
Q Consensus 112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~---~i~~~g~i~~L~~lL~~-~-~~~v~~~a~~~L~n 186 (384)
.+.++|+++.++.-+...+ -+.+..++.+..|+-......+. ...... ...+-.++.. . .+++.-.|...|..
T Consensus 74 ef~~~~~l~~lI~~l~~l~-fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~-~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLE-FESRKDVLQIFNNLLRRQVGTRSPTVEYLETN-PEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhccc-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhC-HHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 4567899999999998877 68888888888887653322222 222111 2222223332 1 23443333333333
Q ss_pred hhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhh----hchHH-HHHHhhccCCHhHH
Q 016714 187 VAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQV----KPALP-ILQRLIHLNDEEVL 261 (384)
Q Consensus 187 l~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~----~~~~~-~L~~lL~~~~~~i~ 261 (384)
.... +.....++...-.......+ +.+.-++...|..++..+.+.......+.. ...++ .--.++.+.+.-+.
T Consensus 152 cirh-e~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 152 CIRH-EFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHhh-HHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 2222 23445555655566666666 444456777777777777665422222222 22333 46677888888888
Q ss_pred HHHHHHHHHhccCCh---HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 262 TDACWALSYLSDGPN---DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 262 ~~a~~~l~~l~~~~~---~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
..+..+++.+....+ .....+.+..-+..++.+|.+++..++-.|....--.++.
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 999999988775533 2233344446788999999999999999999998888765
No 254
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.35 E-value=1.8 Score=34.15 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=58.9
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 147 (384)
+++..+.+.|++.++.+|..|+..|..++..........+...+++..|+.++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999998887654344455677889999999999754448899888888877664
No 255
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.12 E-value=1.7 Score=37.25 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcC-------CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH-HHHHhcC
Q 016714 89 ALQLEATTQFRKLLSIERSPPIDEVIKAG-------VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT-RVVIEHG 160 (384)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-------~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~g 160 (384)
+-|.-|+.+|.|+.-. +.+++.++..+ ++..|+.+|....++..++-|.-.|.+++.++.... ....+.+
T Consensus 139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4677899999998654 45666665444 455667777665558899999999999999876655 4455678
Q ss_pred ChHHHHHhhcCC
Q 016714 161 AVPMFVQLLSSG 172 (384)
Q Consensus 161 ~i~~L~~lL~~~ 172 (384)
+|..|+.++.+.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999763
No 256
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.99 E-value=13 Score=30.68 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=79.0
Q ss_pred hhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 016714 242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
....+|.+.+-|...+....--|...+..|... ..+.+-.++ ..++..|-..|.+.++.+...++.+|..++...+..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 367889999999888877777777777777766 555554433 356777788889999999999999999997766544
Q ss_pred HHHHHHcCchHHHHHHhc----cC----------CchhHHHHHHHHHHHHhc-CCHH
Q 016714 321 TQFVIDNGVLPCLYQLLT----QN----------HKKSIKKEACWTISNITA-GNRA 362 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~----~~----------~~~~v~~~a~~~L~nl~~-~~~~ 362 (384)
...++-. +..|+..++ .. ....+.....-+|..+-. |.++
T Consensus 115 G~aLvPy--yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPY--YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHH--HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 4444322 222333333 21 134566666667776665 4444
No 257
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=33 Score=34.87 Aligned_cols=278 Identities=14% Similarity=0.108 Sum_probs=149.4
Q ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 75 SIPSMVQGVWSE-DPALQLEATTQFRKLLSIERSPPIDEVI--KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 75 ~l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
....+++.++.. |..+++.++++++-++..- +-.-+.+. -.++...+.+++..-..-+-+...+..|+.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456677777766 6778888999988666432 22223332 2344555666665432245667777777766543222
Q ss_pred hHHHHHhcCChHHHHHhh------cCCCHHHHHHHHHHHHhhhC----CCCchhhHHHhcCChHHHHHHhcccch---hH
Q 016714 152 HTRVVIEHGAVPMFVQLL------SSGSDDVREQAVWALGNVAG----DSPSCRDLVLSSGALMPLLAQLNEHSK---LS 218 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL------~~~~~~v~~~a~~~L~nl~~----~~~~~~~~i~~~g~i~~L~~~l~~~~~---~~ 218 (384)
.... ....++.++ ..+.+-++.+.+.+|.|+.. .++.+.. ++-+++++-.+.+. .-
T Consensus 606 ~I~P-----~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 606 HIAP-----YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVY 674 (978)
T ss_pred hhhH-----HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceee
Confidence 2211 112222222 12556677788888888862 2222222 22334443322222 22
Q ss_pred HHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHH-HHhccCChHHHHHHHHcCChHHHHHhcCC
Q 016714 219 MLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWAL-SYLSDGPNDKIQAVIEAGVCPRLVELLMH 297 (384)
Q Consensus 219 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l-~~l~~~~~~~~~~~~~~g~~~~L~~lL~~ 297 (384)
+.+.+...-.....+.+ .-.....+++|.+...+....+.+ .-++.++ +|+.-.+.... .-...|+++.+..+|.+
T Consensus 675 L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDD 751 (978)
T ss_pred hhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHH
Confidence 33333222122222212 222334567788887775544333 2333333 33333333222 22345888999999987
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 298 PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
-..+-....+.++.++...++ ........++++.+..-+..+ ..|.+..+-..+++.+.-.+++.+-.++
T Consensus 752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvl 822 (978)
T KOG1993|consen 752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVL 822 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHH
Confidence 666667778888888877555 344455668888876655433 2566666666677777666666655554
No 258
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.91 E-value=11 Score=30.52 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=78.3
Q ss_pred hhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc--CChHHHHHhcCCCC-hhhHHHHHHHHHHhh-
Q 016714 239 FEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA--GVCPRLVELLMHPS-ATVLIPALRTVGNIV- 314 (384)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~--g~~~~L~~lL~~~~-~~v~~~a~~~l~nl~- 314 (384)
...+...+..+..+|++.+++-+..++..+.-.++.++. +.+.++ .++..++..|+.++ +.+...++.++..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 344566777788999999999888888888888876532 233333 46888999997654 567788888888885
Q ss_pred --cCChHHHHHHHHc---CchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 315 --TGDDAQTQFVIDN---GVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 315 --~~~~~~~~~i~~~---g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+.++....+... ++++.++.+++. ......+.-+|..+..
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLP 143 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 4455655555544 344445555542 3566777777777765
No 259
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=2.3 Score=37.74 Aligned_cols=100 Identities=20% Similarity=0.230 Sum_probs=65.5
Q ss_pred ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHH-HHhhc---cCCHhHHHHHHHHHHHhccCChHH
Q 016714 203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPIL-QRLIH---LNDEEVLTDACWALSYLSDGPNDK 278 (384)
Q Consensus 203 ~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L-~~lL~---~~~~~i~~~a~~~l~~l~~~~~~~ 278 (384)
.+..+++-+ .+....+-+.++.++..+.......... .+..+ ..++. .++..++.+|-.+|..+..+....
T Consensus 130 vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~ 204 (334)
T KOG2933|consen 130 VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ 204 (334)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence 344455555 5556678888888888887764332222 23322 33333 234668999999999887764432
Q ss_pred HHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 279 IQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 279 ~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
.+++.|...+.+.++.++..++.++.+..
T Consensus 205 -------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 205 -------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 24677888888888888888887777764
No 260
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=87.71 E-value=13 Score=32.96 Aligned_cols=190 Identities=16% Similarity=0.223 Sum_probs=97.4
Q ss_pred hhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714 71 KKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS 150 (384)
Q Consensus 71 ~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~ 150 (384)
..++.+..|.+.|..+|+... .+.+++... .+++..++|.|+..=. + +.+-..++..|.+++.- .
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~P-~ 74 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTWP-I 74 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCCC-H
Confidence 345677888888887776554 444444432 1444455665555422 3 78999999999999872 1
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc----------ccchhHHH
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN----------EHSKLSML 220 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~----------~~~~~~~~ 220 (384)
+.. . +-.| .+..-+.........+. .++..+...+++..++..+. ...+..+.
T Consensus 75 ~~~---~--~~~~--------~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii 137 (266)
T PF04821_consen 75 ELL---V--ESQP--------KDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLII 137 (266)
T ss_pred HHh---c--cCCC--------CChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHH
Confidence 110 0 1000 01111111111111111 13344444444444444441 12245677
Q ss_pred HHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC-C
Q 016714 221 RNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP-S 299 (384)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~-~ 299 (384)
+.++..+.|+..-++.+....... .+...+.. .+..+.+.|+...|+.+..+. .
T Consensus 138 ~lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~--------------li~~l~~~~v~~lLL~l~s~~~~ 192 (266)
T PF04821_consen 138 ELVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQ--------------LIWALFESGVLDLLLTLASSPQE 192 (266)
T ss_pred HHHHHHHHHHhcCCCCcccccccc-----------hhHHHHHH--------------HHHHHHHcCHHHHHHHHHhCccc
Confidence 888888888888742221111101 11222222 333455678888888888765 3
Q ss_pred hhhHHHHHHHHHHhhcCC
Q 016714 300 ATVLIPALRTVGNIVTGD 317 (384)
Q Consensus 300 ~~v~~~a~~~l~nl~~~~ 317 (384)
.......+.++..+..+.
T Consensus 193 ~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 193 SDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred cchhhHHHHHHHHHHcCC
Confidence 334446666777666553
No 261
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.56 E-value=13 Score=40.25 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=91.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (384)
+.+..++..|..+...+|..|+.||+++..-+|... .....-..+-..+ .++...++.+|+-.++...-..+..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~e~-- 889 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIPEL-- 889 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccHHH--
Confidence 467778888888899999999999999997666421 1111222333444 4566788999998888766654432
Q ss_pred hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 240 EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 240 ~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
.......+..-+..+...|+..++.++..+|...++... +. .++..++.-..++...|+.-++.++-++
T Consensus 890 --~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~--~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 890 --IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IV--DMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred --HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HH--HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 233444455555666778999999999999887654321 11 1233333333444555777777777665
No 262
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=87.44 E-value=7.3 Score=28.47 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=53.2
Q ss_pred HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHH
Q 016714 284 EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTI 353 (384)
Q Consensus 284 ~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L 353 (384)
..+++..|+.+.+.+.......++..+..++. .+.....+.+-|+...|.++-... ++..+...--++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 45778999999999988899999999999887 455556688889999888887666 676666554444
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.26 E-value=2.4 Score=33.60 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=60.0
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.+++.|+..|..+...........+....++..|+.++....++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999887765344455677889999999999873338999999988887765
No 264
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=87.25 E-value=19 Score=31.37 Aligned_cols=112 Identities=22% Similarity=0.215 Sum_probs=64.1
Q ss_pred hchHHHHHHhhccCCHh--------HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHH
Q 016714 243 KPALPILQRLIHLNDEE--------VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGN 312 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~--------i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~n 312 (384)
..++|.+++++..++.. +-...-.++..++ .|=++.|..++.++ +..++..|+.++..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 46788999998765531 2222223333333 34556666666655 46789999999999
Q ss_pred hhcCChHHHHHHHHcCchHHHHHH-hccCCchhHHHHHHHHHHHHhc----CCHHHHHHHHhCCc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQL-LTQNHKKSIKKEACWTISNITA----GNRAQIQVHDSFHL 372 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~l-l~~~~~~~v~~~a~~~L~nl~~----~~~~~i~~l~~~~~ 372 (384)
++...+..+..+++. +..++.- +... ++.+ --+.+++++. .--..|+.+.+.|+
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~-~~~~---~~~Lv~~~~dL~~~EL~~~I~~~f~~~l 198 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERN-PSFL---WGSLVADICDLYPEELLPEIRKAFEDGL 198 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccC-chHH---HHHHHHHHHhcCHHHhHHHHHHHHHcCC
Confidence 998877666665542 2222222 3333 2221 1223344443 34556677777777
No 265
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=29 Score=34.50 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=57.9
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHH
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG-NRAQIQV 366 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~i~~ 366 (384)
+..+-.+|..+++.++...-.++|-++..+|.. ++++.|.++.... +.++.-.|.++++-+.+| +...+..
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~-D~eva~naIfamGLiGAGTnNARla~ 713 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDG-DLEVAMNAIFAMGLIGAGTNNARLAQ 713 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCc-chHHHHHHHHHhccccCCcchHHHHH
Confidence 455666677888999999999999988877755 4678888988888 899999999999999986 4444444
Q ss_pred HHh
Q 016714 367 HDS 369 (384)
Q Consensus 367 l~~ 369 (384)
++.
T Consensus 714 mLr 716 (878)
T KOG2005|consen 714 MLR 716 (878)
T ss_pred HHH
Confidence 443
No 266
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.53 E-value=26 Score=32.13 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=102.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhc-CCchhHHHHHhcC--ChHHHHHhhcC-----CC--------HHHHHHHHH
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVAS-GTSEHTRVVIEHG--AVPMFVQLLSS-----GS--------DDVREQAVW 182 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~-~~~~~~~~i~~~g--~i~~L~~lL~~-----~~--------~~v~~~a~~ 182 (384)
++.+...|.+.. +.+...+++.|..++. +.......+...- -.+.|.+++.. +. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 778888898888 8889999999999998 6656666666532 34566666642 11 288888876
Q ss_pred HHHhhh-CCCCchhhHHH-hcCChHHHHHHhcccchhHHHHHHHHHHhh-hhcCCCCCC--hhh--hhchHHHHHHhhcc
Q 016714 183 ALGNVA-GDSPSCRDLVL-SSGALMPLLAQLNEHSKLSMLRNATWTLSN-FCRGKPPTP--FEQ--VKPALPILQRLIHL 255 (384)
Q Consensus 183 ~L~nl~-~~~~~~~~~i~-~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~--~~~~~~~L~~lL~~ 255 (384)
.+..+. ..++..+..++ +.+.+..+++-| ..++.++....+.+|.. +.....-+. ... -...+..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 666554 44454555544 455677788888 44667777777777763 444331111 111 16677888887777
Q ss_pred CCH----hHHHHHHHHHHHhccCC
Q 016714 256 NDE----EVLTDACWALSYLSDGP 275 (384)
Q Consensus 256 ~~~----~i~~~a~~~l~~l~~~~ 275 (384)
+++ .+...+-..|..+|..+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 666 67777777777777543
No 267
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.52 E-value=22 Score=31.33 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhhhCC-------CCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714 174 DDVREQAVWALGNVAGD-------SPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPTPFEQVK 243 (384)
Q Consensus 174 ~~v~~~a~~~L~nl~~~-------~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 243 (384)
....+.++..|..++.- +.+.|-.+.-.+.+|.++..+.... .......++..|+.+|...+.. ...
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~---~La 152 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP---NLA 152 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc---cHH
Confidence 34456667777766532 1212333333345666677663333 1245567778888888653322 112
Q ss_pred chHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 016714 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQF 323 (384)
Q Consensus 244 ~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 323 (384)
.++....+--..+..+....++..|..-.. +. .+...+..|+.+|.++-+.++..++.+|..+....+-...
T Consensus 153 ~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~- 224 (262)
T PF14225_consen 153 RILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP- 224 (262)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-
Confidence 233322222223345566666666654221 11 1224467899999988889999999999999865443322
Q ss_pred HHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 324 VIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 324 i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
...+++..+.++++.+ ...+|.-+|-++..
T Consensus 225 -~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 225 -HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred -cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 4456788899999776 56777777777765
No 268
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=86.48 E-value=65 Score=36.69 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcC--
Q 016714 85 SEDPALQLEATTQFRKLLSIE--RSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHG-- 160 (384)
Q Consensus 85 s~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g-- 160 (384)
+.+..+...|+..|+++...- ..+-...-.+..++..|..++.+..+.+++...+.|+.++..... .-+..|
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcCcH
Confidence 345667788888887765321 111111122445677888877665558999999999998865322 223334
Q ss_pred -ChHHHHHhhcCCCHHHHHHHHHHHHhhhCC
Q 016714 161 -AVPMFVQLLSSGSDDVREQAVWALGNVAGD 190 (384)
Q Consensus 161 -~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 190 (384)
++..|-....+.++.+...|..++..|+.+
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 223333333457788999999988888754
No 269
>PRK14707 hypothetical protein; Provisional
Probab=86.35 E-value=68 Score=36.76 Aligned_cols=276 Identities=17% Similarity=0.112 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc
Q 016714 91 QLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS 170 (384)
Q Consensus 91 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~ 170 (384)
...++..|...++.+ +.....+-..|+...|=.+-+.+++++++..+...-.-++.+ +..+..+-. ..+-..+..|+
T Consensus 181 c~~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~-q~va~~lN~ls 257 (2710)
T PRK14707 181 CQAVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKP-QELGNALNALS 257 (2710)
T ss_pred HHHHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCCh-HHHHHHHHHHh
Confidence 334555555555543 333333433343333434445577677777665555556653 444443333 34555555554
Q ss_pred C-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHh-hhhcCCCCCChhhhhchHHH
Q 016714 171 S-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLS-NFCRGKPPTPFEQVKPALPI 248 (384)
Q Consensus 171 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~~~~ 248 (384)
. ++.....+++.+|..=..+.+..+..+-.. .+--.++.|.+.++..+-..++..|. .|.. ++..........+..
T Consensus 258 Kwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~~~~~~~~ 335 (2710)
T PRK14707 258 KWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKALNARGLST 335 (2710)
T ss_pred cCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhccchHHHHH
Confidence 4 555555666555554333444444433222 33445566656677766665555544 3443 343333333333333
Q ss_pred HHHhh-ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHc
Q 016714 249 LQRLI-HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDN 327 (384)
Q Consensus 249 L~~lL-~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~ 327 (384)
.+..| .-+|..+...+..+|.-=...+++..+.+--.|+-..|-.+-+=++..+...|...|..=..++++....+--.
T Consensus 336 ~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q 415 (2710)
T PRK14707 336 ALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ 415 (2710)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh
Confidence 33333 44565666666665544333344444443333444444444455666667777777766666666665544444
Q ss_pred CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 328 GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 328 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
|+-..|--+-+-+ +..+...++-.|.--.+...+.++.+--.++
T Consensus 416 ~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~v 459 (2710)
T PRK14707 416 GVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINV 459 (2710)
T ss_pred hHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHH
Confidence 4444444444445 7778887777777666666666655544444
No 270
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.30 E-value=23 Score=31.26 Aligned_cols=214 Identities=18% Similarity=0.129 Sum_probs=120.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCC--CCcHHH-HH------Hc-CCHHH----HHHhhcCCCChHHHHHHHHHHHHH
Q 016714 80 VQGVWSEDPALQLEATTQFRKLLSIER--SPPIDE-VI------KA-GVVPR----FVEFLGRHDMPQLQFEAAWALTNV 145 (384)
Q Consensus 80 v~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~-~~------~~-g~i~~----Lv~lL~~~~~~~~~~~a~~~L~nl 145 (384)
+.+|.+..+.+-..|+..+.++++.-+ ++.... +. .. |..+- +++-|.++. ....+...|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 445566666666666666666655421 111111 11 11 33333 344444433 344555555555
Q ss_pred hcC-------CchhHHHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc-
Q 016714 146 ASG-------TSEHTRVVIEHGAVPMFVQLLSSGS----DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE- 213 (384)
Q Consensus 146 ~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~- 213 (384)
+.- .++.+-.+.=.+.+|.++.-+.+++ ......++..|+.+|.... ...+..++..+..
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 442 2222333333456788888777766 2445567788888884322 1123333333322
Q ss_pred --cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 016714 214 --HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRL 291 (384)
Q Consensus 214 --~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L 291 (384)
.+..+....++..|+.-.. |. .....+-.+..+|.+.-+.++..++.+|..+....+-... ....++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2244566666655543322 21 2245677788999988899999999999998876543322 445678888
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhc
Q 016714 292 VELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
.++|.++ .-..|+.++-++..
T Consensus 234 lrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 234 LRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred HHHhCCc---cHHHHHHHHHHHHh
Confidence 8888764 34567777776654
No 271
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=86.19 E-value=6.6 Score=45.07 Aligned_cols=263 Identities=14% Similarity=0.164 Sum_probs=134.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCC--CcHHHHH--HcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714 84 WSEDPALQLEATTQFRKLLSIERS--PPIDEVI--KAGVVPRFVEFLG-RHDMPQLQFEAAWALTNVASGTSEHTRVVIE 158 (384)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~s~~~~--~~~~~~~--~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 158 (384)
...+++.+..+...+..++..... ......+ ...++..+..+-. .++ +.++......+. ...-....+
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~laQ 563 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLAQ 563 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhcC
Confidence 356677777776666655543211 0000001 1122333332222 233 565554444443 222222334
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc---ccchhHHHHHHHHHHhhhhcCCC
Q 016714 159 HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~---~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
.+.+..+...+..+.-.+++.+...+|+++..+|.+.-..+. ..++..+. .+.-.-+......-+..+....+
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 455666777777788899999999999999877632111111 11122221 11100000111111111111111
Q ss_pred CCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC-CCChhhHHHHHHHHHHhh
Q 016714 236 PTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM-HPSATVLIPALRTVGNIV 314 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~ 314 (384)
.-....+.+.+..++..+...+..+...+..+++.||...........+ ..++.+.+-+. ..+..-+..++++++++.
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1112223445556666677777788888888999988765533333333 44455555543 345566788999999998
Q ss_pred cCChHHHHHHH-HcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 315 TGDDAQTQFVI-DNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 315 ~~~~~~~~~i~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
....-...... ..-++..+...+.......++.++...++++.+
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 65432222111 124566666666666567788888888887766
No 272
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.12 E-value=3 Score=32.55 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=57.0
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDM-PQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.+++.|+..+..++.....+....+...+++..|+.+++.... +.++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4678888889999999999999999988776534445667788899999999987553 3388888777776654
No 273
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=51 Score=37.09 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=115.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 119 VPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
+..++..|..++ |..+..++.+++.++.. .....++. +..+.+++-+.+ .++-.|..-..++|.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~--v~~~~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQV--VGSAPFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHh--ccccchHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 344455555556 77777777777777663 11112221 234555555554 45555555556666664332211111
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc----
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSD---- 273 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~---- 273 (384)
-.....+..++.+-.++.++.++..++.++..+...........+...+..+..+|-+..+ ...+.-.+.+.+..
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence 1112245566666655566789998898888887765333344445556655665533221 12222222222111
Q ss_pred -------------CCh--HHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714 274 -------------GPN--DKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 274 -------------~~~--~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~ 338 (384)
.+. +.+.. ...-.+-...-++.++++.++..++.++-++-...+.+... .-+++.+..++.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence 111 01111 11122333334456778888999999999986555533221 124455666665
Q ss_pred cCCchhHHHHHHHHHHHHh
Q 016714 339 QNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 339 ~~~~~~v~~~a~~~L~nl~ 357 (384)
++ ---.|+...-++..++
T Consensus 1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred ch-hhhhhhhHHhhhhHHh
Confidence 55 3334444444444444
No 274
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.72 E-value=3 Score=42.72 Aligned_cols=130 Identities=13% Similarity=0.134 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh
Q 016714 174 DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI 253 (384)
Q Consensus 174 ~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL 253 (384)
+.++.++.-+|+++|--... + ....+|.|++-|..+.+..++.+..-++..+|... -..+...+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~----L-aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----L-AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----H-HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 67888999999999843322 1 22368899999988888888888888888888752 134477899999999
Q ss_pred ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
..+++-++..++-.|++|...+--. .+-.++-+++-.|-+.+++++..|=.+++.+...
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997653211 1111223333344456788999999999998754
No 275
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.70 E-value=4.5 Score=40.32 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=60.5
Q ss_pred chHHHHHHhhccC----CHhHHHHHHHHHHHhcc----CChHHHHHHHHcCChHHHHHhc----CCCChhhHHHHHHHHH
Q 016714 244 PALPILQRLIHLN----DEEVLTDACWALSYLSD----GPNDKIQAVIEAGVCPRLVELL----MHPSATVLIPALRTVG 311 (384)
Q Consensus 244 ~~~~~L~~lL~~~----~~~i~~~a~~~l~~l~~----~~~~~~~~~~~~g~~~~L~~lL----~~~~~~v~~~a~~~l~ 311 (384)
..+..+..++.++ .+.+...++-+++.+.. ..+..... +-..+++.+...| ...+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3445555665543 34566666666666553 12110011 1123455555544 2345556778999999
Q ss_pred HhhcCChHHHHHHHHcCchHHHHHHhc-cC-CchhHHHHHHHHHHHHhcCCHHHHH
Q 016714 312 NIVTGDDAQTQFVIDNGVLPCLYQLLT-QN-HKKSIKKEACWTISNITAGNRAQIQ 365 (384)
Q Consensus 312 nl~~~~~~~~~~i~~~g~l~~L~~ll~-~~-~~~~v~~~a~~~L~nl~~~~~~~i~ 365 (384)
|+.... .++.+..++. .. .+..+|..|+|+|..++...+..++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~ 516 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ 516 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH
Confidence 986522 2333444444 11 1567999999999999864444444
No 276
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.48 E-value=12 Score=36.39 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=76.7
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchh
Q 016714 116 AGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCR 195 (384)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (384)
.|.+..++..+.+++ ..++..++.+|.-+... ....+..+-.|.+..|..-+-+..+.++.+|+.+|+.+-.....-
T Consensus 90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne- 166 (885)
T COG5218 90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE- 166 (885)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-
Confidence 467888888888888 89999999999988763 444445666678888888777888999999999999986433211
Q ss_pred hHHHhcCChHHHHHHhcccchhHHHHHHHHH
Q 016714 196 DLVLSSGALMPLLAQLNEHSKLSMLRNATWT 226 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 226 (384)
+......|...++.+++.++++.++.-
T Consensus 167 ----en~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 167 ----ENRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 112345677777777888888877643
No 277
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=84.49 E-value=41 Score=32.56 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC------CChhhHHHHHHHHHHhhcCChHHHHHHHHc---Cc
Q 016714 259 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH------PSATVLIPALRTVGNIVTGDDAQTQFVIDN---GV 329 (384)
Q Consensus 259 ~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~---g~ 329 (384)
+....+-.++.||+...... ..+..|..+|.. .+..+..-|+.+++.+..+..+....-+.. -+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 44555556777776543221 235667777732 234566778888888877663222211221 26
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 330 LPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 330 l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
++.|...++.. ++.+--+..-.+.++.
T Consensus 303 l~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 77777777766 5666666666666666
No 278
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.32 E-value=36 Score=31.81 Aligned_cols=156 Identities=11% Similarity=0.076 Sum_probs=88.6
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc---CCC------ChHHHHHHHHHHHHHh
Q 016714 77 PSMVQGVWSED-PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG---RHD------MPQLQFEAAWALTNVA 146 (384)
Q Consensus 77 ~~lv~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~---~~~------~~~~~~~a~~~L~nl~ 146 (384)
..+.+.|..+. +..+...+..++ ++|.+ ....+-+.....+..|+.+-. .++ +..+..++..||.|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~Letvr-ILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVR-ILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHH-HHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 44555555555 445555666666 45654 233222322223444444432 111 1478999999999999
Q ss_pred cCCchhHHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHhhhCCCCchh-hHHHhcCChHHHHHHhccc------
Q 016714 147 SGTSEHTRVVIEHGAVPMFVQLLSSGS-----DDVREQAVWALGNVAGDSPSCR-DLVLSSGALMPLLAQLNEH------ 214 (384)
Q Consensus 147 ~~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~~l~~~------ 214 (384)
..++..+..+.+......+++.+...- -.+...=+..|.-+..-.+..| ..+.+.++++.+.+.+...
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 999999999999888888777664311 1122222223333332222334 3445677888887777421
Q ss_pred --------chhHHHHHHHHHHhhhhcCC
Q 016714 215 --------SKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 215 --------~~~~~~~~a~~~L~~L~~~~ 234 (384)
.+.+....++.++.|+....
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 12234556777788887765
No 279
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.15 E-value=29 Score=32.41 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=96.4
Q ss_pred HHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhh----------ccCCHhHHHHHHHHHHHhccCC
Q 016714 206 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLI----------HLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 206 ~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL----------~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.++..|.+.........++.++.-|++.+....-....+.+..|+.+- ...|..+...++.||.|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 455556444445555666777777777653322222234444444332 1235688999999999999998
Q ss_pred hHHHHHHHHcCChHHHHHhcCC----C-ChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHHHHHhccCC--------
Q 016714 276 NDKIQAVIEAGVCPRLVELLMH----P-SATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCLYQLLTQNH-------- 341 (384)
Q Consensus 276 ~~~~~~~~~~g~~~~L~~lL~~----~-~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L~~ll~~~~-------- 341 (384)
....+...+......+.+.+.. + -..+...-++.|--+..-. +...+.+.+.++++.+-+.+.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 8877777777776666666521 1 1234444555555554433 455566778899999999987641
Q ss_pred ------chhHHHHHHHHHHHHhc
Q 016714 342 ------KKSIKKEACWTISNITA 358 (384)
Q Consensus 342 ------~~~v~~~a~~~L~nl~~ 358 (384)
+-...-+|..++.|++.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 12455678889999986
No 280
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.64 E-value=26 Score=36.16 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=85.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 016714 78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI 157 (384)
Q Consensus 78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 157 (384)
.+...+.++++..-...+.++..+...+.-++.. ...-++.-..-.+..- ..+......+|..++.-.++....+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444455556555555555555554433222211 1111111111111111 35667788899999998888877777
Q ss_pred h-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 158 E-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
. .++...++.++-++++++.+.|...|....+.. .| .+.+-.++ +..-........|.|..+....
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GR--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cH--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 5 678999999999999999999999999987532 22 22223333 2223455677777777777654
No 281
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.45 E-value=6.7 Score=30.53 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=56.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH--DMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|+++++.+|+.|+..|..+......+....+.....+..|+.++... .++.++..++..+.+.+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999887655233344555557888899999753 237899988888877665
No 282
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.26 E-value=5 Score=31.54 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=57.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR-----HDMPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.+++.|+..|..+...........+...+++..|+.++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999988765534445667788899999999963 1237888888888776654
No 283
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=1 Score=40.57 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHHHhcC---CHHHHHHHHhCCc----cccC
Q 016714 305 PALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISNITAG---NRAQIQVHDSFHL----FVLH 376 (384)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~---~~~~i~~l~~~~~----ll~~ 376 (384)
...+.++++|...++..+.+.+.|+++.++.-..-+ .+|-+++-...++.++... +++.+..|-..+. .+++
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme~q~~~~~daL~k 454 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKMEPQTTTHSDALEK 454 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCCccccchHhHHHh
Confidence 477899999998888888888889988766654422 2889999999999999985 4444444445555 6777
Q ss_pred CCcccc
Q 016714 377 EDFSLY 382 (384)
Q Consensus 377 ~~~~~~ 382 (384)
+.|.++
T Consensus 455 aGFe~~ 460 (478)
T KOG2676|consen 455 AGFESY 460 (478)
T ss_pred cCcEEE
Confidence 777665
No 284
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.93 E-value=14 Score=33.08 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=74.9
Q ss_pred ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh--hhhhchH----HHHHHhhc--------cCCHhHHHHHHHHH
Q 016714 203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF--EQVKPAL----PILQRLIH--------LNDEEVLTDACWAL 268 (384)
Q Consensus 203 ~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~~----~~L~~lL~--------~~~~~i~~~a~~~l 268 (384)
++|+++.++ ++.++.++..++.+|..+...-+.... ....|.. +.+..+|. .+...+...+.-++
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 688899999 666899999999999999987544330 1112322 24444444 23456777777777
Q ss_pred HHhccC-----C---hHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccC
Q 016714 269 SYLSDG-----P---NDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQN 340 (384)
Q Consensus 269 ~~l~~~-----~---~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~ 340 (384)
..|+.. . ......++..|++..+...-....+.++...+..+..++..-....-..+ ..+++.|..++.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL-~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHL-QRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHhcCC
Confidence 777431 1 12222334444444433333333466666666666666543111111111 13555666666554
No 285
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.20 E-value=50 Score=34.99 Aligned_cols=235 Identities=15% Similarity=0.162 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCC--
Q 016714 95 TTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSG-- 172 (384)
Q Consensus 95 ~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~-- 172 (384)
..+|..++... .++...+.++.++..++.++-+ .+-+...++++..+....+.+.. ..-+-.++..|++.
T Consensus 663 wDcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 663 WDCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcce
Confidence 34555565554 7788888888888888888843 35555556666555544343221 11234455555541
Q ss_pred ----------CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc---------cchh----HHHHHHHHHHh-
Q 016714 173 ----------SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE---------HSKL----SMLRNATWTLS- 228 (384)
Q Consensus 173 ----------~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~---------~~~~----~~~~~a~~~L~- 228 (384)
...+....+.+++.+.+-+...+..+-+.+++..|+..|-. ..|. ++.......+.
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 13455666778888877666677888888888887766621 1121 11122221111
Q ss_pred hhhcCCCCCChhhh----h----------c---------hHHHH----HHhhccCCHhHHHHHHHHHHHhccC-------
Q 016714 229 NFCRGKPPTPFEQV----K----------P---------ALPIL----QRLIHLNDEEVLTDACWALSYLSDG------- 274 (384)
Q Consensus 229 ~L~~~~~~~~~~~~----~----------~---------~~~~L----~~lL~~~~~~i~~~a~~~l~~l~~~------- 274 (384)
.+|.+. ....... . + .+..+ .+.+.+++-.--..||..+-.+-+.
T Consensus 815 avcena-sNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 815 AVCENA-SNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHhhcc-hhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC
Confidence 122221 1111000 0 1 11111 1112222222223344444333221
Q ss_pred ---ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhc
Q 016714 275 ---PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 275 ---~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~ 338 (384)
.....+.+..+|++..++..+-...++.+..-++.+..++..++.........|+++.|+.++.
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 1233456788999999999998888999999999999999988877777777788888777664
No 286
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=81.94 E-value=58 Score=32.47 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHH---hcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHH
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVI---EHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLL 208 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~ 208 (384)
+++++-|+-+|.-+..+.+..-..+- ....+..++..+. .++..+-.++++|.|+..+ +..+..+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 67888888888777665443332222 2234555555555 4567778899999999988 4456655543 33333
Q ss_pred HHhc---ccchhHHHHHHHHHHhhhhcCC--CCCChhhhhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChHHHHHH
Q 016714 209 AQLN---EHSKLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPILQRLIHL-NDEEVLTDACWALSYLSDGPNDKIQAV 282 (384)
Q Consensus 209 ~~l~---~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~lL~~-~~~~i~~~a~~~l~~l~~~~~~~~~~~ 282 (384)
..+. ..++..++........|++-.- ...+.....-+...+..++.. +|.+.....+-||++|+..+....+.
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~- 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQL- 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHH-
Confidence 3332 2233455554444444443321 111122222223333333332 24455667778889988877655443
Q ss_pred HHcCChHHHHHhcC
Q 016714 283 IEAGVCPRLVELLM 296 (384)
Q Consensus 283 ~~~g~~~~L~~lL~ 296 (384)
.+.--+..++.-+.
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 33333555555553
No 287
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.59 E-value=23 Score=27.54 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=68.6
Q ss_pred ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchHH
Q 016714 254 HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLPC 332 (384)
Q Consensus 254 ~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~~ 332 (384)
..+|.......|..+..-..+. ..++..|-+-|.++++.++..|+..|-.++..... ....+.+...+..
T Consensus 14 ~~~D~~~il~icd~I~~~~~~~---------k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~ 84 (133)
T cd03561 14 EEPDWALNLELCDLINLKPNGP---------KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE 84 (133)
T ss_pred CCccHHHHHHHHHHHhCCCCCH---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH
Confidence 3456666666666665431111 12467788889999999999999999999887655 4444555578888
Q ss_pred HHHHhcc--CCchhHHHHHHHHHHHHhc
Q 016714 333 LYQLLTQ--NHKKSIKKEACWTISNITA 358 (384)
Q Consensus 333 L~~ll~~--~~~~~v~~~a~~~L~nl~~ 358 (384)
|.+++.. ..++.+++.+.-.+.+-+.
T Consensus 85 l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 85 LVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999976 3377899988887777764
No 288
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.56 E-value=6.7 Score=30.97 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=58.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
.++..|.+-|.+.++.++-.|+..|-.+..++ ..+...+...++++.|..++....++.++..++..+..-+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 35677777888889999999999988888764 447777888889999999986666778888888777766654
No 289
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=61 Score=32.41 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=76.8
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC------CCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIER------SPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVA 146 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~------~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~ 146 (384)
+.++-+++.++..|+++|..|+..++.....+. +.+.+.+. ..|.+..+.+-+. + ++.+...+-+|..||
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~--~-~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA--D-SNLKKWLADILSVLA 124 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc--C-chhHhHHHHHHHHHh
Confidence 467999999999999999999999998775432 12222222 2233333333332 3 568888899998888
Q ss_pred cCCchhHHHHH-h-cC-----------ChHHHHHhhcC---------C-CHHHHHHHHHHHHhhhCCCC--chhhHHHhc
Q 016714 147 SGTSEHTRVVI-E-HG-----------AVPMFVQLLSS---------G-SDDVREQAVWALGNVAGDSP--SCRDLVLSS 201 (384)
Q Consensus 147 ~~~~~~~~~i~-~-~g-----------~i~~L~~lL~~---------~-~~~v~~~a~~~L~nl~~~~~--~~~~~i~~~ 201 (384)
-..++....+. . .| .+..|..-+.. + -.++.+.+..++.-...++. +..+.+++.
T Consensus 125 mt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Ev 204 (878)
T KOG2005|consen 125 MTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEV 204 (878)
T ss_pred eeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Confidence 76555444310 0 11 12222222211 1 13344444444444443332 245677777
Q ss_pred CChHHHHHHh
Q 016714 202 GALMPLLAQL 211 (384)
Q Consensus 202 g~i~~L~~~l 211 (384)
+.++.+++..
T Consensus 205 e~id~l~~~V 214 (878)
T KOG2005|consen 205 EGIDLLLDYV 214 (878)
T ss_pred hhHhHHHHHh
Confidence 7777777776
No 290
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.26 E-value=21 Score=28.79 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=61.5
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCC--------------------------------CCcHHHHHHcCCHHHH
Q 016714 76 IPSMVQGVWSE-DPALQLEATTQFRKLLSIER--------------------------------SPPIDEVIKAGVVPRF 122 (384)
Q Consensus 76 l~~lv~~l~s~-~~~~~~~a~~~l~~l~s~~~--------------------------------~~~~~~~~~~g~i~~L 122 (384)
++.+.+.|+.+ +..++.++++.+.-+-.-+. .+..++..-..++..|
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L 91 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINAL 91 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHH
Confidence 45566666654 47788888888875432210 0112222333456667
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhcC-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 123 VEFLGRHDMPQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 123 v~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
+..|+++.....+..+..++.++... ...+ -.+.. .++|.++..++..+...++...+-|+.|.
T Consensus 92 ~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~-~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 92 MRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLP-QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77776655344455556666665532 1222 22222 36777777777666677777777666653
No 291
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.69 E-value=7.2 Score=33.05 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCC-----CChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHH
Q 016714 260 VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMH-----PSATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCL 333 (384)
Q Consensus 260 i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L 333 (384)
-...++..+.-++.+++ ....++++.+--.+..+|.. .....+..++.++|.++..+ +.....+....++|.+
T Consensus 116 RvcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34455555566665554 34466777665556666632 23567889999999999765 4556667778999999
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhc
Q 016714 334 YQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++++..+ ++--+--|++++.-+..
T Consensus 195 LrIme~g-SElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELG-SELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHhc
Confidence 9999998 66666667777776665
No 292
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.41 E-value=38 Score=29.32 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=110.2
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHH
Q 016714 77 PSMVQ-GVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRV 155 (384)
Q Consensus 77 ~~lv~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 155 (384)
+.++. .-+..++..+...+..|..++... +..... ++..+..+.+.+. .+.+.-+.+.+..+...++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchHH--
Confidence 34444 334667889999999999887754 133322 3556666666666 6667778888888877544322
Q ss_pred HHhcCChHHHHHh-----h---c--CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHH
Q 016714 156 VIEHGAVPMFVQL-----L---S--SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW 225 (384)
Q Consensus 156 i~~~g~i~~L~~l-----L---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~ 225 (384)
+.+..++.. . . +...+..-..+.++..+|...|.. -...++.+..+|..+.++..+..++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHH
Confidence 233333333 0 1 122344445567888888777651 11245666677744556667888889
Q ss_pred HHhhhhcCCCCCChhhhhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCCh--HHHHHHHHcCChHHHHHhcCCCCh
Q 016714 226 TLSNFCRGKPPTPFEQVKPALPILQRLIHLN-DEEVLTDACWALSYLSDGPN--DKIQAVIEAGVCPRLVELLMHPSA 300 (384)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~--~~~~~~~~~g~~~~L~~lL~~~~~ 300 (384)
++..||... .. ........+.+-+..+ .+.+....+..+..+..+.. +.. ......++..+-++..+.+.
T Consensus 145 ~l~~Lc~~~-vv---d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 145 ALAPLCEAE-VV---DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHh-hc---cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhcccccc
Confidence 999999542 11 1123334444444333 35555554544444443322 222 12333455555555555443
No 293
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=79.68 E-value=30 Score=31.92 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHHhcCC
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHD------MPQLQFEAAWALTNVASGT 149 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~nl~~~~ 149 (384)
...+.+.+.+++...+..|+..|+. ++.+.. ++|.|+.++...- +.......+..+..|..+.
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 4455555555666666666655541 333333 6888988886431 1455556666777777654
Q ss_pred chhHHHHHhcCChHHHHHhhcC----------CCHHHHHHHHHHHHhhhCC
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSS----------GSDDVREQAVWALGNVAGD 190 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~ 190 (384)
.-.....+. ..+|.++.++-+ ++-.+|+.|+..|+.++..
T Consensus 249 ~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 249 NLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred CCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 444444443 378888877632 3358999999999999843
No 294
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.44 E-value=41 Score=32.19 Aligned_cols=188 Identities=10% Similarity=0.056 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhhhCC----CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC-CCChhhhhchH
Q 016714 172 GSDDVREQAVWALGNVAGD----SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PTPFEQVKPAL 246 (384)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~----~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~ 246 (384)
+++..-+....+++.+... ++..-. -++...+|++...| +.+-.++..++...|+.|....+ ...-.....++
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~-~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~ 161 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVS-QFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLF 161 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGH
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 4566666666666665432 221111 23444677777777 55556777788888777776554 22222334444
Q ss_pred HHHHH-hhccCCHhHHHHHHHHHHHhccCChHHHHHHHHc----CChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-H
Q 016714 247 PILQR-LIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEA----GVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA-Q 320 (384)
Q Consensus 247 ~~L~~-lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~----g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~ 320 (384)
|.|.. .+-.....+ -...+.|......++... ... +++...-+++.+... -..+...|..+...-+. .
T Consensus 162 ~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~ 235 (435)
T PF03378_consen 162 PPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEA 235 (435)
T ss_dssp HHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHH
T ss_pred HHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHH
Confidence 43332 111111111 222222222222211111 111 223333344444432 23566666666554332 2
Q ss_pred HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 016714 321 TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHD 368 (384)
Q Consensus 321 ~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~ 368 (384)
.+..+. .++..+..-|+++...+..+.-+..++.++. .+++..-..+
T Consensus 236 l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~i 283 (435)
T PF03378_consen 236 LEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTI 283 (435)
T ss_dssp HGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 222222 2444444445544345555555555555554 3444443333
No 295
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=79.20 E-value=37 Score=31.18 Aligned_cols=203 Identities=17% Similarity=0.123 Sum_probs=101.1
Q ss_pred HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCc
Q 016714 114 IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 114 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
+...++..|..++..+.++......+.+|+.-...- ..-+...++..+.+-+.+..+.+|..-+..++.+....+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334467777888766554666666666665543311 0111223455666666676666888888888887751111
Q ss_pred hhhHHHhcCChHHHHHHhcc---cchhHHH---HHHHHHHhhhhcCC-CCCChhh------hhchHHHH---HHhhcc-C
Q 016714 194 CRDLVLSSGALMPLLAQLNE---HSKLSML---RNATWTLSNFCRGK-PPTPFEQ------VKPALPIL---QRLIHL-N 256 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~~---~~~~~~~---~~a~~~L~~L~~~~-~~~~~~~------~~~~~~~L---~~lL~~-~ 256 (384)
....-.-..+++.|+..+.. ++-.... ..++.++..++... +...... ..+-=|.+ -+++.. .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 00111122366777777632 1111101 11222222122211 1000000 00000000 022222 3
Q ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHH
Q 016714 257 DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP--SATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 257 ~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
+++-....+.++..+..+.......-....+-..++.++-+. ...+|..|+.++..+...+++.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 455555566666555544332211111234567788888777 7899999999999999887764
No 296
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.77 E-value=11 Score=33.37 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=85.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcC---CHHHHHHhhcCC---CChHHHHHHHHHHHHHhcCCch
Q 016714 78 SMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAG---VVPRFVEFLGRH---DMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 78 ~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g---~i~~Lv~lL~~~---~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+...+.+=.++.++-++-.+|-++. .+......... +...+..++... ..+..+.-+++++.|+... +.
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~ 142 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAAL---HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP 142 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCC---CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHh---CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence 33333333233445667777774443 34444444222 244455544332 3478999999999999885 56
Q ss_pred hHHHHHhcC--ChHHHHHhhcCC----CHHHHHHHHHHHHhhhCCCCchh-hHHHhcCChHHHHHHhc-ccchhHHHHHH
Q 016714 152 HTRVVIEHG--AVPMFVQLLSSG----SDDVREQAVWALGNVAGDSPSCR-DLVLSSGALMPLLAQLN-EHSKLSMLRNA 223 (384)
Q Consensus 152 ~~~~i~~~g--~i~~L~~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~~l~-~~~~~~~~~~a 223 (384)
.+..+.... .+...+..+... +..++..++..+.|++......+ +.-.....+..+++.+. ...+++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 666666532 233333333333 78899999999999973211000 00011113445555332 33578888888
Q ss_pred HHHHhhhhcCC
Q 016714 224 TWTLSNFCRGK 234 (384)
Q Consensus 224 ~~~L~~L~~~~ 234 (384)
+-+|.+|...+
T Consensus 223 LvAlGtL~~~~ 233 (268)
T PF08324_consen 223 LVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHhccC
Confidence 99999999653
No 297
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.63 E-value=77 Score=31.88 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=61.1
Q ss_pred hchHHHHHHhh----ccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC---ChhhHHHHHHHHHHhhc
Q 016714 243 KPALPILQRLI----HLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP---SATVLIPALRTVGNIVT 315 (384)
Q Consensus 243 ~~~~~~L~~lL----~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~---~~~v~~~a~~~l~nl~~ 315 (384)
..+++.+...| ...|.+-+.-++.+|+|+-. ...++.|..++... +..++..|+++|..++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 44555555554 45667888889999999842 13567788888655 67889999999999977
Q ss_pred CChHHHHHHHHcCchHHHHHHhccC-CchhHHHHHHHHHHH
Q 016714 316 GDDAQTQFVIDNGVLPCLYQLLTQN-HKKSIKKEACWTISN 355 (384)
Q Consensus 316 ~~~~~~~~i~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~n 355 (384)
..+..+. +.+.+++.+. .++++|-.|..+|..
T Consensus 554 ~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 554 HCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp T-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 6664433 3455666543 367788888766655
No 298
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=1.3e+02 Score=34.22 Aligned_cols=274 Identities=15% Similarity=0.129 Sum_probs=136.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTR 154 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~ 154 (384)
.+..++..+...++-.+..+..++..++......+-- .+..+.+++-|.+..++-.|.--.-+++.+-......-.
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~----a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFV----ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3455566667778888888888887776543222211 123555666666555355554444444444332111100
Q ss_pred HHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc--hhHHHHHHHHHHh---
Q 016714 155 VVIEHGAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS--KLSMLRNATWTLS--- 228 (384)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~--~~~~~~~a~~~L~--- 228 (384)
.-.-..++..+..+..++ ++.|+.-++.++.-+............+. -+..+..++.+.+ +.++......++.
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 001123466677776664 55899999999998876543333322221 2223334443322 3333333332222
Q ss_pred ---hhhcCC-----CCCCh----hhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcC
Q 016714 229 ---NFCRGK-----PPTPF----EQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLM 296 (384)
Q Consensus 229 ---~L~~~~-----~~~~~----~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~ 296 (384)
++.+.- ++... .....++-...-++.++|+.++..+..++-++--..+... --.-++..|..+|.
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLCSLLS 1108 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHHHHhc
Confidence 222211 22221 1113344444445677788999999999988765544221 11234666777666
Q ss_pred CCChhhHHHHHHHHHHhhcCChH----HH-------------HHHH--HcCchHHHHHHhccCCchhHHHHHHHHHHHH
Q 016714 297 HPSATVLIPALRTVGNIVTGDDA----QT-------------QFVI--DNGVLPCLYQLLTQNHKKSIKKEACWTISNI 356 (384)
Q Consensus 297 ~~~~~v~~~a~~~l~nl~~~~~~----~~-------------~~i~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl 356 (384)
+...-.+.....++..++..... .. +..+ +.|+=-.+..++....+.+..+....++.++
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 65544444444444444432210 00 1111 2233334555555443566666666666663
No 299
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.15 E-value=24 Score=25.79 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 016714 90 LQLEATTQFRKLLSIERSPPIDEVI-KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQL 168 (384)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l 168 (384)
++..|+..+..=+... --....+. ..+++..|++.+..+. +..+..++..|..++.. +.....+.+.|+...|-++
T Consensus 3 IR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 3 IRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred HHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence 4555554444222221 22233333 4567888899888887 66889999999998884 7778888889999887776
Q ss_pred hcCCCHHHHHHHHHHH
Q 016714 169 LSSGSDDVREQAVWAL 184 (384)
Q Consensus 169 L~~~~~~v~~~a~~~L 184 (384)
=..-++..+...-..+
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6555666555544333
No 300
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=77.46 E-value=22 Score=29.36 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASG-TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 192 (384)
-.+|.+++-|.... ...++.|...+..+... ..+..-.++. ..+..|-..|.+.++++...++.+|..|+..++
T Consensus 38 ~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 45778888777766 56677777777766554 2333333332 567777788889999999999999999965544
No 301
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.09 E-value=13 Score=29.37 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=59.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
.++..|.+-|.+.++.++-.|+..|-.+..++. .+...+....++..|..++....+..+...++..+...+..-
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 356777777888899999999999999887654 367777888899999999955577888888888777766543
No 302
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.92 E-value=92 Score=32.14 Aligned_cols=251 Identities=14% Similarity=0.123 Sum_probs=142.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH
Q 016714 77 PSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV 156 (384)
Q Consensus 77 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 156 (384)
-.+=+.+.++....|.+++..+-++.... +. ..++++ .+=.|.+....++ -.++...+++...- ....+.+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pf--pifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PF--PIFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC-Cc--hhhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchhh
Confidence 44555677777777778887777775433 22 233333 3445667777777 68888888887732 2223333
Q ss_pred Hh-cCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCC
Q 016714 157 IE-HGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 157 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 235 (384)
.. ...+..+.....+.|+.-+..++..+|.++.--| +.+-...++..=..+.+.--.++++.+..+++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 32 2234444445567889999999999998864333 223344444443244444445677777777776432
Q ss_pred CCChhhhhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhhHHHHHHHHHH
Q 016714 236 PTPFEQVKPALPILQRLIHLND--EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATVLIPALRTVGN 312 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~~--~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v~~~a~~~l~n 312 (384)
. +. .++.-.+..++...+ +...-..+.+++.+...... ...+......++ .++..+-...-+.++.+
T Consensus 171 ~--FA--~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 D--FA--CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred h--hH--HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 1 11 222333444444433 34455667777777654321 122334455555 33444445566777777
Q ss_pred hhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 313 IVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 313 l~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++...-.. -.+-.+.+.+.+..+...-++..+.|.+.+++.
T Consensus 241 Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 77532211 124566777788755456677778888888874
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=76.82 E-value=6.1 Score=33.93 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCC-------hHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCc-hhhHHHhcCC
Q 016714 133 QLQFEAAWALTNVASGTSEHTRVVIEHGA-------VPMFVQLLSS-GSDDVREQAVWALGNVAGDSPS-CRDLVLSSGA 203 (384)
Q Consensus 133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~i~~~g~ 203 (384)
.-|..|+.+|+.++-. +.+.+.++..+- +..|+.++.. +++-.++-|+-.|.|+|..++. ++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 5688999999999873 566666665554 3444555543 7889999999999999976654 5566677888
Q ss_pred hHHHHHHhcc
Q 016714 204 LMPLLAQLNE 213 (384)
Q Consensus 204 i~~L~~~l~~ 213 (384)
+..|+.++.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999943
No 304
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=75.70 E-value=12 Score=29.09 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=55.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhH-HHHHHHHHHhhhhcC
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLS-MLRNATWTLSNFCRG 233 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~-~~~~a~~~L~~L~~~ 233 (384)
++..|.+-|.+.++.++-.|+..|-.+..++ +.+...+...+++..|..++....+.. +...++.++..-...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 5666777788899999999999999988764 447777788888999998886554434 777777776665553
No 305
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.14 E-value=26 Score=37.49 Aligned_cols=235 Identities=17% Similarity=0.195 Sum_probs=122.9
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH--------HHhhcCCCChHHHHHHHHHHHHH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRF--------VEFLGRHDMPQLQFEAAWALTNV 145 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~L--------v~lL~~~~~~~~~~~a~~~L~nl 145 (384)
..++.|+..+.+...+.|.-++..++.++...-..-....++.-++..+ =++..+.--..+++.++|+|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 3467888888899999999999999988865422212222222222221 11111111136889999999887
Q ss_pred hcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHh-hhCCCCchhhHHHh--cCChHHHHHHhcccchhHHHHH
Q 016714 146 ASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGN-VAGDSPSCRDLVLS--SGALMPLLAQLNEHSKLSMLRN 222 (384)
Q Consensus 146 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~i~~--~g~i~~L~~~l~~~~~~~~~~~ 222 (384)
..+-.+. .+. ..+..+..++..+.-+++...+..+-. ++. .++.+.. ..+++..+.-| .+++.+++..
T Consensus 157 l~~~~~s--~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~ai----r~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~ 227 (1549)
T KOG0392|consen 157 LKHMDES--LIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVAI----RQDLLFQLLNLVLDFVIEGL-EDSDDDVRSV 227 (1549)
T ss_pred HHhhhhH--hhH--HHHHHHHHHHcCcchhheechHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh-hhcchHHHHH
Confidence 6642111 111 245667777776655555544443332 221 1122110 01334444555 5566677777
Q ss_pred HHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCH-h-HHHHHHHHHHHhccCChHHHH----HHHHcCChHHHHHhcC
Q 016714 223 ATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDE-E-VLTDACWALSYLSDGPNDKIQ----AVIEAGVCPRLVELLM 296 (384)
Q Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~-i~~~a~~~l~~l~~~~~~~~~----~~~~~g~~~~L~~lL~ 296 (384)
++..+.-.....+......+..++..+...+..-|. . -.......+..++...+ ..+ .-.+.|++|.+...+.
T Consensus 228 aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e-vl~l~~~~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENE-VLDLFEQQNLEVGLVPRLWPFLR 306 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH-HHHHHHHhhhhhccchhhHHHHH
Confidence 777666555443222333334444444444322221 0 01111122223333221 111 1123588999999998
Q ss_pred CCChhhHHHHHHHHHHhhcCCh
Q 016714 297 HPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 297 ~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
+.-..++..++.++..+....+
T Consensus 307 ~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 307 HTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 8878888889999888875543
No 306
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=74.57 E-value=31 Score=27.91 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=60.4
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHH-hcC-ChHHHHH-hhcCCC--HHHHHHHHHH
Q 016714 109 PIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVI-EHG-AVPMFVQ-LLSSGS--DDVREQAVWA 183 (384)
Q Consensus 109 ~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~g-~i~~L~~-lL~~~~--~~v~~~a~~~ 183 (384)
....+++..+.+.++..+.+++ +.+-..+++++..+... .+..+. +.+ .++.++. ++.+++ ..-++.++.+
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~ 140 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEI 140 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 4555677888999999988877 89999999999998753 222222 222 2444554 566543 4678889999
Q ss_pred HHhhhCCCCchhhHHHh
Q 016714 184 LGNVAGDSPSCRDLVLS 200 (384)
Q Consensus 184 L~nl~~~~~~~~~~i~~ 200 (384)
+..++.++.-..+....
T Consensus 141 l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 141 LRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHhChhHHHHHHHH
Confidence 99999877655554443
No 307
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.85 E-value=1.5e+02 Score=32.68 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=57.5
Q ss_pred cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 016714 285 AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364 (384)
Q Consensus 285 ~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i 364 (384)
.|++|.|-.-|.+++..++..|...+|.+.......... -.......++.-+.+. ...+|-++.-...++...++...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~-~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE-TYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-cchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhh
Confidence 378999999999999999999999999998755443220 0113444455556666 78899999998888887655544
Q ss_pred H
Q 016714 365 Q 365 (384)
Q Consensus 365 ~ 365 (384)
.
T Consensus 336 ~ 336 (1266)
T KOG1525|consen 336 K 336 (1266)
T ss_pred h
Confidence 3
No 308
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=73.72 E-value=5.8 Score=29.43 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHH
Q 016714 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIP 305 (384)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~ 305 (384)
+...+..+..|+..+ +.+..+++.|+++.|+.+|.|++..|...
T Consensus 63 Ld~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 455677788887765 56778999999999999999998876543
No 309
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=73.23 E-value=15 Score=38.03 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714 220 LRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN-DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298 (384)
Q Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~ 298 (384)
...+.-+|.++|-... ......+|.|++-|... +..++.+..-+++.+|......+ ...+|.+...|.++
T Consensus 948 ra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~-----d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT-----DRYIPMIAASLCDP 1018 (1529)
T ss_pred HHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH-----HHhhHHHHHHhcCc
Confidence 3445557888887532 23456899999888654 56788888888888876543222 34689999999999
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHHcC--chHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 299 SATVLIPALRTVGNIVTGDDAQTQFVIDNG--VLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
++-++..++-.|+++....- +-=.| ++..+..++ +. +++++.-|-++++.+..
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~-----vKw~G~Lf~Rf~l~l~-D~-~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGI-----VKWNGELFIRFMLALL-DA-NEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhh-----hhcchhhHHHHHHHHc-cc-CHHHHHHHHHHHHHHHh
Confidence 99999999999999986321 11112 233344444 44 68999999999999885
No 310
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=72.29 E-value=6.3 Score=21.34 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714 344 SIKKEACWTISNITAGNRAQIQVHDS 369 (384)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~i~~l~~ 369 (384)
.+|.+|+++|+++ ++++.+..+++
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~~~L~~ 25 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAVPALIK 25 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHHHHHHH
Confidence 5799999999998 56666666654
No 311
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=71.84 E-value=39 Score=31.20 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=68.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-----c-hhHHHHHHHHHHhhhhcCCCCC
Q 016714 164 MFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-----S-KLSMLRNATWTLSNFCRGKPPT 237 (384)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-----~-~~~~~~~a~~~L~~L~~~~~~~ 237 (384)
.+...+.+++...+..|+.. |..|.. .. -.+|.++..+... . +...+...+.++..|..+..-.
T Consensus 182 ~It~a~~~~~~~~r~~aL~s---L~tD~g-l~------~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 182 EITEALVGSNEEKRREALQS---LRTDPG-LQ------QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHH---hccCCC-ch------hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 33444444555555554443 443332 11 1456666665321 1 4566777777778888774333
Q ss_pred ChhhhhchHHHHHHhhc----------cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714 238 PFEQVKPALPILQRLIH----------LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298 (384)
Q Consensus 238 ~~~~~~~~~~~L~~lL~----------~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~ 298 (384)
....+..++|.++.++- .+...++..|+..++.++..-...... +...+...+.+.|.++
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNT-LQPRITRTLLKALLDP 321 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCC
Confidence 44455778898887762 123578999999999988643322211 2233444555555443
No 312
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=71.82 E-value=99 Score=30.18 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHhcC
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-------DMPQLQFEAAWALTNVASG 148 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~~ 148 (384)
..++.+.+-++++..+..|+..|+ .++.+.. ++|.|+.++..+ ++-.+.......+..|..+
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~------TDsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLE------TDSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhc------cCccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 567777777888888888888776 1444444 488899988643 2245566666777777664
Q ss_pred CchhHHHHHhcCChHHHHHhhcC----------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-chh
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSS----------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-SKL 217 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-~~~ 217 (384)
..-+.+..+ ...+|.++.++-+ .+-.+|.-|+..+..++.+....... ++..++..+.+.+.+. .+.
T Consensus 278 p~i~lepYl-h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 278 PNIFLEPYL-HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred CccchhhHH-HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 333333333 3577888877643 34568888999998888765543333 3444666677766444 233
Q ss_pred HHHHHHHHHHhhhhc
Q 016714 218 SMLRNATWTLSNFCR 232 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~ 232 (384)
....-++..|..|..
T Consensus 356 st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 356 STHYGAIAGLSELGH 370 (576)
T ss_pred hhhhhHHHHHHHhhh
Confidence 444445555554443
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.13 E-value=32 Score=35.48 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=95.1
Q ss_pred CCcHHHHHHcCCHHHHHHhhcCCCC-------hHHHHHHHHHHHHHhcCCchhHHHHHhc--------CChHHHHHhhcC
Q 016714 107 SPPIDEVIKAGVVPRFVEFLGRHDM-------PQLQFEAAWALTNVASGTSEHTRVVIEH--------GAVPMFVQLLSS 171 (384)
Q Consensus 107 ~~~~~~~~~~g~i~~Lv~lL~~~~~-------~~~~~~a~~~L~nl~~~~~~~~~~i~~~--------g~i~~L~~lL~~ 171 (384)
-+..+.+.+.|++..++++...+.+ .++...|+.+|.-+..- +..+..+... .+|..++..-..
T Consensus 591 w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g 669 (1516)
T KOG1832|consen 591 WPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANG 669 (1516)
T ss_pred chHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccc
Confidence 3455667778888888888764321 35666777777666654 4444443321 244444443221
Q ss_pred ----CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCCh--HHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhch
Q 016714 172 ----GSDDVREQAVWALGNVAGDSPSCRDLVLSSGAL--MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA 245 (384)
Q Consensus 172 ----~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i--~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (384)
-+++++..|+.++-|+....|.++...+..=+- ..=-..+...+....+.+.+.-.++-.++ ..+
T Consensus 670 ~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndG 740 (1516)
T KOG1832|consen 670 SNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDG 740 (1516)
T ss_pred cccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------Ccc
Confidence 378999999999999988877666543321000 00001111222333444554445555554 357
Q ss_pred HHHHHHhhccCC-----HhHHHHHHHHHHHhccCCh
Q 016714 246 LPILQRLIHLND-----EEVLTDACWALSYLSDGPN 276 (384)
Q Consensus 246 ~~~L~~lL~~~~-----~~i~~~a~~~l~~l~~~~~ 276 (384)
+..|+++|+... ..++.-||.+|.-|+..+.
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 788888887643 4689999999999988765
No 314
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=71.11 E-value=91 Score=29.15 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhhhCCCCchhhHHHhc---CChHHHHHHhcc-cchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHH
Q 016714 173 SDDVREQAVWALGNVAGDSPSCRDLVLSS---GALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI 248 (384)
Q Consensus 173 ~~~v~~~a~~~L~nl~~~~~~~~~~i~~~---g~i~~L~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 248 (384)
+..+..+|+.+|+.+..+..-. ..+-.. -++...+..+.. ..+..+....+|+|+.=--............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6789999999999987654321 111111 134445555532 33567888888888743222111112222333333
Q ss_pred HHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHHHc-CChHHHHHhcCCCChhhHHHHHHHHHHh
Q 016714 249 LQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVIEA-GVCPRLVELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 249 L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~-g~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (384)
+..+-. -+...+..+.+.++.++....+... +... -+++.++..+-+....++..|..+.-.+
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 333332 4567788999999999887665432 2223 3788888888887777777765555544
No 315
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.67 E-value=7 Score=35.47 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCchhHHHHHhcCChHHHHHh--hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHh
Q 016714 138 AAWALTNVASGTSEHTRVVIEHGAVPMFVQL--LSSGSDDVREQAVWALGNVAGDSPSCRDLVLS 200 (384)
Q Consensus 138 a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l--L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~ 200 (384)
..+.+++++...++..+.+.+.|+++.++.- +.+.+|-+++-.+.|+.++..++..+++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5678999999999999999999999887763 44678999999999999999998888776654
No 316
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.45 E-value=36 Score=37.29 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=116.0
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc---cchhHHHHH--HH
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE---HSKLSMLRN--AT 224 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~---~~~~~~~~~--a~ 224 (384)
.+.+..+++.|+...+..-+++.++.++..|.|++.-.-.+-+...+...+.-.+..++..... .+++.+... ..
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHH
Confidence 4455578888999999999999999999999888877654433211111111122233333321 223322221 11
Q ss_pred -HHHhhhhcCCCCCChhh-----------hhchHHHHHHhhccCCHhHHHHHHHHHHHhccC--ChHHHHHHHHcCChHH
Q 016714 225 -WTLSNFCRGKPPTPFEQ-----------VKPALPILQRLIHLNDEEVLTDACWALSYLSDG--PNDKIQAVIEAGVCPR 290 (384)
Q Consensus 225 -~~L~~L~~~~~~~~~~~-----------~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~--~~~~~~~~~~~g~~~~ 290 (384)
.-.++++..+...-... .-..+|.+-+++.+..++-...--|.+.-+..+ +...++.....+....
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceE
Confidence 12234444321111111 134567777777776655444444444333322 3334556677788888
Q ss_pred HHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHH
Q 016714 291 LVELLMHP--SATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKE 348 (384)
Q Consensus 291 L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~ 348 (384)
++....++ +..-+...+.++++-+.........+.+.|++..+..++.++. ++..+++
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~ 1649 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKA 1649 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhh
Confidence 88887764 3444557788888887766666677778899999999999875 3444444
No 317
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.12 E-value=6 Score=29.35 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 016714 136 FEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVRE 178 (384)
Q Consensus 136 ~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~ 178 (384)
.+.+..|..++. .|+.-..+++.|+++.|+.+|.++|.+|..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445667777777 478888899999999999999999887753
No 318
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=69.02 E-value=75 Score=32.81 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHH-cCChHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 016714 258 EEVLTDACWALSYLSDGPNDKIQAVIE-AGVCPRLVELLMHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 258 ~~i~~~a~~~l~~l~~~~~~~~~~~~~-~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (384)
..+......+|..+++.+++....+.. .+....++.++-+++.++...|...|..+..
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 346677888999999998877776665 5889999999999999999999999999874
No 319
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.93 E-value=31 Score=34.56 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHhcccchhHHHHHHHHHHhhhhcCC-CCCChhhh----hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHH
Q 016714 208 LAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFEQV----KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAV 282 (384)
Q Consensus 208 ~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~----~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~ 282 (384)
.+-| +..+..++.+|+..+.++---. |+...+.. ..-+..+.++|.++-+.++..|..-++.....--+.+..-
T Consensus 180 ~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 180 WRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3344 5668889999999998877543 44333333 5556678889999889999888777666543211111110
Q ss_pred HHcCChHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 283 IEAGVCPRLVELLM-HPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 283 ~~~g~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
+=..++..+..-+. +....|+......|..+......+. +++ -++|.+-..|.+. ...+|-.+.-.|.-|-
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHH
Confidence 00112222222232 2345677777777766665433221 122 2344555555555 5666665555554443
No 320
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.15 E-value=99 Score=28.39 Aligned_cols=224 Identities=17% Similarity=0.124 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhc
Q 016714 135 QFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLN 212 (384)
Q Consensus 135 ~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~ 212 (384)
|...+.+|..+... + +...++..|..++.. .++......+.+|+.=+..- ... ...++..+.+-+
T Consensus 4 r~~~~~~L~~l~~~-~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl- 70 (339)
T PF12074_consen 4 RVLHASMLSSLPSS-S------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGL- 70 (339)
T ss_pred HHHHHHHHHhCCCc-c------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHh-
Confidence 44445555555441 2 223345566666654 67777777777776543211 111 111333444444
Q ss_pred ccchhHHHHHHHHHHhhhhcCCC-CCChhhhhchHHHHHHhhc----cCCHhH----HHHHHHHHHHhccCChHHHHH--
Q 016714 213 EHSKLSMLRNATWTLSNFCRGKP-PTPFEQVKPALPILQRLIH----LNDEEV----LTDACWALSYLSDGPNDKIQA-- 281 (384)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~lL~----~~~~~i----~~~a~~~l~~l~~~~~~~~~~-- 281 (384)
.+..+.+++.-+..+.......+ .........++|.|.+.+. ++-+.. ...++-.+. ++....+....
T Consensus 71 ~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~ 149 (339)
T PF12074_consen 71 KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKN 149 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhh
Confidence 34444577766666666665222 2233444677787777763 222211 111111111 22111111111
Q ss_pred HH----HcCChHHHH---HhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-chhHHHHHHHH
Q 016714 282 VI----EAGVCPRLV---ELLMH-PSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-KKSIKKEACWT 352 (384)
Q Consensus 282 ~~----~~g~~~~L~---~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~ 352 (384)
.. ..+-=+.++ ++... .+++.....++++..+..+.+.....-.....-..++.++.++. ...+|+.|.-+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 00 000000000 11112 33445566777777776554322211111234455666666652 68899999999
Q ss_pred HHHHhcCCHHHHHHHHhCCc
Q 016714 353 ISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 353 L~nl~~~~~~~i~~l~~~~~ 372 (384)
+..+.+.+++.+...+-.|+
T Consensus 230 l~~l~~~~~~~l~~~li~~l 249 (339)
T PF12074_consen 230 LKKLYASNPELLSKSLISGL 249 (339)
T ss_pred HHHHHHhChHHHHHHHHHHH
Confidence 99999988875555444444
No 321
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=67.17 E-value=54 Score=26.06 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=81.5
Q ss_pred CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhC--CCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHH
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAG--DSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATW 225 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~--~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~ 225 (384)
+++.-+.+.+.+.+..+++++.. .+..++.+.+..++-+.. .++..-..++..+.+..++..-.+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45677788888999999999987 667788877777776653 233344566777888888876656668888888877
Q ss_pred HHhhhhcCCCCCChhh----hhchHHHH---HHhhccCCHhHHHHHHHHHHHh
Q 016714 226 TLSNFCRGKPPTPFEQ----VKPALPIL---QRLIHLNDEEVLTDACWALSYL 271 (384)
Q Consensus 226 ~L~~L~~~~~~~~~~~----~~~~~~~L---~~lL~~~~~~i~~~a~~~l~~l 271 (384)
.|..++-.-....... ..+-+|.+ +++..++|.-++..+-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 7777776432221111 13445544 4556777777777665555544
No 322
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.13 E-value=26 Score=36.30 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=68.6
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhc----cCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLS----DGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~----~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (384)
..++..-..+|.+.+-.++..++.++.... .+++.... ++ +..-+.++..+...++-+...|+.++-+++....
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 455566677888999999999999887743 34443333 23 3467888999999999999999999999987665
Q ss_pred HHHHHHHHcCchHHHHHHhcc
Q 016714 319 AQTQFVIDNGVLPCLYQLLTQ 339 (384)
Q Consensus 319 ~~~~~i~~~g~l~~L~~ll~~ 339 (384)
+....=+-..++|.+..++..
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 544433334677777766654
No 323
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.35 E-value=32 Score=36.26 Aligned_cols=258 Identities=17% Similarity=0.124 Sum_probs=138.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--CchhHHHHHhc
Q 016714 82 GVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG--TSEHTRVVIEH 159 (384)
Q Consensus 82 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--~~~~~~~i~~~ 159 (384)
.|++++.+.|...+..+.++.+.. .++-...-+.--+|.|+.-+..-. ..+|...+.+|.--... ...+++
T Consensus 475 FLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE----- 547 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE----- 547 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH-----
Confidence 345778888888888888887654 455544556677888888776544 45665555544321110 001111
Q ss_pred CChHHHHHhhcCC-CHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccc---hhHHHHHHHHHHhhhhcCCC
Q 016714 160 GAVPMFVQLLSSG-SDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHS---KLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 160 g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~---~~~~~~~a~~~L~~L~~~~~ 235 (384)
+-.|+-+|+.+ +..+....+.....+..-+..+++.+.+-|.++.|...+.++. .++- . ...+.....+|
T Consensus 548 --LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-y---sgvsehydrnp 621 (2799)
T KOG1788|consen 548 --LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-Y---SGVSEHYDRNP 621 (2799)
T ss_pred --HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-h---hhHHHHhhcCC
Confidence 22355566653 2445555555556666666778899999999998888775432 0100 0 00111222111
Q ss_pred -CCChhhh---hchHHHHHHhhccC---CHh--H---HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhH
Q 016714 236 -PTPFEQV---KPALPILQRLIHLN---DEE--V---LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVL 303 (384)
Q Consensus 236 -~~~~~~~---~~~~~~L~~lL~~~---~~~--i---~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~ 303 (384)
.+.+... ...+-.--++..+. ++- + ..-.-.+|..+...+.++...+.++.++..+++++- +..-+
T Consensus 622 ss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehR 699 (2799)
T KOG1788|consen 622 SSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHR 699 (2799)
T ss_pred CCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHH
Confidence 1111110 00000001111221 110 0 111134666677777777778888888888888884 34567
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCC-----------chhHHHHHHHHHHHHhc
Q 016714 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNH-----------KKSIKKEACWTISNITA 358 (384)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~ 358 (384)
...++++..+....+.+.. +.-+..+++.|+++- -.+..+....++..+..
T Consensus 700 SslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivg 761 (2799)
T KOG1788|consen 700 SSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVG 761 (2799)
T ss_pred HHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 7888999988876665332 112333455554420 12344555666666664
No 324
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.17 E-value=7.4 Score=30.61 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=51.8
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChH---HHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQ---LQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~---~~~~a~~~L~nl~~ 147 (384)
.++..+.+.|++.++.++..|+..+..++..........+.....+..|..++.+..... ++..++..|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 356778888889999999999988887776542333444556678888888886544233 77777776665543
No 325
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.88 E-value=1.7e+02 Score=30.26 Aligned_cols=150 Identities=11% Similarity=0.186 Sum_probs=70.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHH----HH-HHh---c---ccchhHHHHHHHHHHhh
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMP----LL-AQL---N---EHSKLSMLRNATWTLSN 229 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~----L~-~~l---~---~~~~~~~~~~a~~~L~~ 229 (384)
++|.++.+|..++.-+-..|+.++-.+-.-.......+...+.+.+ ++ .++ . +..++-+.+.....+..
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 4677777777777777788888887764322222222333333332 11 122 1 11123233333333332
Q ss_pred hhcCCCCCChhhhhchHHHHHHhh----ccC-CHh----HHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCCh
Q 016714 230 FCRGKPPTPFEQVKPALPILQRLI----HLN-DEE----VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSA 300 (384)
Q Consensus 230 L~~~~~~~~~~~~~~~~~~L~~lL----~~~-~~~----i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~ 300 (384)
+-. ........+++.|.+.+ .++ ++. ..+..+-++...+..++..+.. .+...+|.+...|..+=.
T Consensus 579 ~~~----~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~-~e~aL~p~fq~Il~eDI~ 653 (960)
T KOG1992|consen 579 LQS----AIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS-LEEALFPVFQTILSEDIQ 653 (960)
T ss_pred CHH----hhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHHHHH
Confidence 221 11112223333333333 222 333 3444455555555555444433 344566666666665555
Q ss_pred hhHHHHHHHHHHhhc
Q 016714 301 TVLIPALRTVGNIVT 315 (384)
Q Consensus 301 ~v~~~a~~~l~nl~~ 315 (384)
+..-.++..++-++.
T Consensus 654 EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 654 EFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556667777777653
No 326
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=65.80 E-value=1.4e+02 Score=29.10 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=115.1
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--Cchh-H-------HHHHhcCChHHHHHhhcC----CC----HHHHH
Q 016714 117 GVVPRFVEFLGRHDMPQLQFEAAWALTNVASG--TSEH-T-------RVVIEHGAVPMFVQLLSS----GS----DDVRE 178 (384)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--~~~~-~-------~~i~~~g~i~~L~~lL~~----~~----~~v~~ 178 (384)
.+|..+.++++.+....+|..|+|.|+.+--. +..+ + ..+-+...+...+.++-. ++ +....
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 46777788887655578999999999986331 1111 1 112222334444444421 22 33333
Q ss_pred HHHHHHHhhhCC---CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhcc
Q 016714 179 QAVWALGNVAGD---SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHL 255 (384)
Q Consensus 179 ~a~~~L~nl~~~---~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~ 255 (384)
.++..+...... .|-+=. -.+.+|.++ +..++++..++..-..=+..........-.-+.|.++.-|
T Consensus 177 vvl~~ia~vgeS~qyPPVNWa-----alLsPLMRl---nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sL-- 246 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPPVNWA-----ALLSPLMRL---NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSL-- 246 (589)
T ss_pred HHHHHhhhcCCCCCCCCccHH-----HHhhHHHhc---cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhh--
Confidence 333333332111 111100 023344433 2345555555433222222211111111122223333222
Q ss_pred CCHhHHHHHHHHHHHhccC-ChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH--cCchHH
Q 016714 256 NDEEVLTDACWALSYLSDG-PNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVID--NGVLPC 332 (384)
Q Consensus 256 ~~~~i~~~a~~~l~~l~~~-~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~--~g~l~~ 332 (384)
+.....+.+..+.....+ .+++++.+++.-.+..+-......++.+...++.-+..-..- +.-.+.... +.....
T Consensus 247 -s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKl-P~P~~h~Ws~Lc~ttek 324 (589)
T PF11229_consen 247 -SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKL-PSPAQHCWSLLCETTEK 324 (589)
T ss_pred -hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHH
Confidence 344455555555444443 556667776644444444333345677788888888774433 222222222 455666
Q ss_pred HHHHhccC-C--chhHHHHHHHHHHHHhcCCHHHHHHHHhCCc
Q 016714 333 LYQLLTQN-H--KKSIKKEACWTISNITAGNRAQIQVHDSFHL 372 (384)
Q Consensus 333 L~~ll~~~-~--~~~v~~~a~~~L~nl~~~~~~~i~~l~~~~~ 372 (384)
+.+++-+. . +-+.-...+-||+.++...-+.+..+-+.++
T Consensus 325 IF~lLPn~i~~~eveLYi~vAkCLSEMtd~eidrItqitK~ni 367 (589)
T PF11229_consen 325 IFDLLPNKIQRNEVELYIGVAKCLSEMTDTEIDRITQITKDNI 367 (589)
T ss_pred HHHhCcccccHHHHHHHHHHHHHHhhcCHHHHHHHHHhhhccc
Confidence 67776332 0 2333344677888887655566666655665
No 327
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.41 E-value=63 Score=32.87 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=56.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (384)
..|..|..+...+-+.++.+++.++.++-...|+- +...+..+++.| .+++..+...|.+.|.+|....|+-..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-----E~~LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-----ENNLLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCccee
Confidence 35677777777777899999999999998777652 233556778888 666667888888888888887676544
Q ss_pred hh
Q 016714 240 EQ 241 (384)
Q Consensus 240 ~~ 241 (384)
.+
T Consensus 378 Vv 379 (988)
T KOG2038|consen 378 VV 379 (988)
T ss_pred eh
Confidence 33
No 328
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=65.31 E-value=10 Score=32.02 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=56.9
Q ss_pred cCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 016714 285 AGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQI 364 (384)
Q Consensus 285 ~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i 364 (384)
....+.+..++.++++-++..++.++....... ... .++..+...+.++ +..+++...|+|..++..+++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHH
Confidence 345678888889999988888877766655431 111 2344556667777 89999999999999999988888
Q ss_pred HHHHhCC
Q 016714 365 QVHDSFH 371 (384)
Q Consensus 365 ~~l~~~~ 371 (384)
...+..+
T Consensus 191 ~~~l~~~ 197 (213)
T PF08713_consen 191 LEFLQKN 197 (213)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
Confidence 8777654
No 329
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=64.92 E-value=1.1e+02 Score=27.86 Aligned_cols=181 Identities=11% Similarity=0.083 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc--------cchhHHHHHHHHHHhhhhcCCCCCChhhhhchH
Q 016714 175 DVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE--------HSKLSMLRNATWTLSNFCRGKPPTPFEQVKPAL 246 (384)
Q Consensus 175 ~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~--------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 246 (384)
.++...+..+.......+.. +. +....+++|++.+.. ..++++..-....+..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45666666666666544432 22 333478888874421 124555555555555555433333333446666
Q ss_pred HHHHHhhccC---CHhHHHHHHHHHHHhccCChHHHHHHHH---cCChHHHHHhcCCCChhhHHHHHHHHHHhhcC----
Q 016714 247 PILQRLIHLN---DEEVLTDACWALSYLSDGPNDKIQAVIE---AGVCPRLVELLMHPSATVLIPALRTVGNIVTG---- 316 (384)
Q Consensus 247 ~~L~~lL~~~---~~~i~~~a~~~l~~l~~~~~~~~~~~~~---~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~---- 316 (384)
...+.++..+ -|+.+..-...|..+........-.+-. ..++..++.-++|.+.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777553 3777777777776666543222111100 13467777788999999999999999888643
Q ss_pred ChHHHHHHHHcC---chHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 317 DDAQTQFVIDNG---VLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 317 ~~~~~~~i~~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
+++....+...- ++..+..++.++.....-+.-+-+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 334444444432 23333333433323333334444444444
No 330
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=64.87 E-value=77 Score=37.09 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=78.5
Q ss_pred ccchhHHHHHHHHHHhhhhcCCCCCChhhh-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 016714 213 EHSKLSMLRNATWTLSNFCRGKPPTPFEQV-KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRL 291 (384)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L 291 (384)
.+..-.++..+.-.+.+++..+|....... ...+..+..+..+.-..+...+..-+..+.......+...+ ...+..+
T Consensus 575 ~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~ 653 (2341)
T KOG0891|consen 575 HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVL 653 (2341)
T ss_pred hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHH
Confidence 444556777778788888887652211111 11111122222222222222222222232222222222211 2344666
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 292 VELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
+..+...++.+...++.+++.+|....+......+ ..++.+.+.+.......-+..+.|++.++.+
T Consensus 654 ~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 654 LPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 77777788888899999999998765544433444 4566666666655356667788999999986
No 331
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=64.80 E-value=68 Score=31.41 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc--c--------cchhHHHHHHHHHHhhhhcCCCCCChh
Q 016714 171 SGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN--E--------HSKLSMLRNATWTLSNFCRGKPPTPFE 240 (384)
Q Consensus 171 ~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~--~--------~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (384)
+++.+|...|-..|-.+..+-+ +...+..|..+.. . ..++.++..++ ..||+... ...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL---~~L~kS~~--Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKIL---SLLSKSVI--AAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHH---HHHHHhHH--HHh
Confidence 4566777777777777765522 2234556666653 1 11333444333 44444310 001
Q ss_pred hhhchHHHHHHhhccC--CHhHHHHHHHHH---HHhccC-ChHHH---HHHHHcCChHHHHH----hcCCCChhhHHHHH
Q 016714 241 QVKPALPILQRLIHLN--DEEVLTDACWAL---SYLSDG-PNDKI---QAVIEAGVCPRLVE----LLMHPSATVLIPAL 307 (384)
Q Consensus 241 ~~~~~~~~L~~lL~~~--~~~i~~~a~~~l---~~l~~~-~~~~~---~~~~~~g~~~~L~~----lL~~~~~~v~~~a~ 307 (384)
....++..+...|.++ +..++..++..+ .....+ .+... ...+..++.+.+-. -....+...+..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1123344444455555 455555555544 333333 22222 23344455555510 11234567899999
Q ss_pred HHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 308 RTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 308 ~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.+||.|+...+.... -+.+++..|.+-|..+ .++++-..--+|+.++.
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 999999988775431 2346788888888776 88999888888888875
No 332
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=64.23 E-value=1.1e+02 Score=27.72 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=72.6
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHc------------CChHHHHHhcCC-----CChhhHHHHHHHHHHhhcCCh
Q 016714 256 NDEEVLTDACWALSYLSDGPNDKIQAVIEA------------GVCPRLVELLMH-----PSATVLIPALRTVGNIVTGDD 318 (384)
Q Consensus 256 ~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~------------g~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~ 318 (384)
.|+.-..-|+.++.++...+++..+.+..- ..++.+..+|.. .++.++.--+..|.--..+++
T Consensus 109 ~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p 188 (312)
T PF04869_consen 109 LDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECP 188 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-H
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCH
Confidence 355556678889999998887766654321 135566666633 356666667777777778888
Q ss_pred HHHHHHHHc-CchHHHHHHhccC--CchhHHHHHHHHHHHHhc-C------CHHHHHHHHhCCc
Q 016714 319 AQTQFVIDN-GVLPCLYQLLTQN--HKKSIKKEACWTISNITA-G------NRAQIQVHDSFHL 372 (384)
Q Consensus 319 ~~~~~i~~~-g~l~~L~~ll~~~--~~~~v~~~a~~~L~nl~~-~------~~~~i~~l~~~~~ 372 (384)
..+..+++. +.++.|+...... .+.-++--++..|+-+.. . +...+..++.+.+
T Consensus 189 ~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~~R~~l~~ll~~ri 252 (312)
T PF04869_consen 189 DAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPIPRATLHPLLTKRI 252 (312)
T ss_dssp HHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-HHHHHHHHHHHT
T ss_pred HHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHhc
Confidence 877777776 4789999875433 256677778887776664 1 3455666665443
No 333
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=64.19 E-value=20 Score=28.12 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=53.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHHHHHHhcccchhH---HHHHHHHHHhhhhcC
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMPLLAQLNEHSKLS---MLRNATWTLSNFCRG 233 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~L~~~l~~~~~~~---~~~~a~~~L~~L~~~ 233 (384)
++..|.+-|.+.++.++..|+..|-.+..++ +.++..+....++..|..++....... +...+...+......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999998888765 457777777778888888885444333 677776666555543
No 334
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=64.09 E-value=1e+02 Score=27.21 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHhhcCCh----------------HHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 016714 300 ATVLIPALRTVGNIVTGDD----------------AQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAG 359 (384)
Q Consensus 300 ~~v~~~a~~~l~nl~~~~~----------------~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 359 (384)
..+.+.++..+.|+..-.+ .....+.+.|+++.|+.+.++........-..-++..+..+
T Consensus 134 ~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 134 NLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 4566677777777764411 22234456799999999988763333333444455555553
No 335
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=63.44 E-value=1.6e+02 Score=29.50 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHH----HcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhc--CC
Q 016714 88 PALQLEATTQFRKLLSIERSPPIDEVI----KAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEH--GA 161 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~----~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--g~ 161 (384)
++.++-|+-.+|-++... ..-..+. ...++..++..+. .+ +..+..++++|.|+-.+ +..++.+... ..
T Consensus 558 ~~~~fPalDilRl~v~h~--~~~s~~~~~~~~~~~~~~li~~~~-~~-~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHH--SSNSLFCDREEGQNLVGTLIPILN-AD-PANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred HHHhhhHHHHHHHHHhcc--chhhhhhhhhhhhHHHHhhhcccc-cc-hhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 344556666666554421 1111222 2245666666665 44 78899999999999986 6666666543 12
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhc----ccchhHHHHHHHHHHhhhhcCC
Q 016714 162 VPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLN----EHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~----~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
+..+...-..++..++...+....|++.--- ..-.+.+..+.+...+. ...+.+..-.++-+|.+|+..+
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~---~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLI---QDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHH---hcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 2222222223445555554444445441100 00011344444444442 2223444455666777787764
No 336
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.41 E-value=32 Score=26.75 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHH
Q 016714 258 EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTV 310 (384)
Q Consensus 258 ~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l 310 (384)
.++...++.++......-+ ...+.+.++++.+..+|.++ ..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 6778888888888776433 34567778899999998543 4577777665
No 337
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=63.11 E-value=42 Score=27.83 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=54.2
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 289 PRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
+.+.....+++.-++..++.++....... .... .+++.+..++.+. +..+++...|+|..++...++.+...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE-TDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-ccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 67788889999988888888777765431 1111 2344555566666 899999999999999997777766665
Q ss_pred hC
Q 016714 369 SF 370 (384)
Q Consensus 369 ~~ 370 (384)
+.
T Consensus 181 ~~ 182 (197)
T cd06561 181 EK 182 (197)
T ss_pred HH
Confidence 44
No 338
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.83 E-value=1.2e+02 Score=27.60 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hhcC--------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCC
Q 016714 133 QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ-LLSS--------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGA 203 (384)
Q Consensus 133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~ 203 (384)
.++.+.+..+.......+ ..+. +....+|.|+. .|.+ .++++.......+..+-..-...-..+.+. +
T Consensus 42 ~iKkeIL~Li~t~i~~~~-~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE-DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S--HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 566667777766665433 2223 33356777666 3332 344554444444444433222222334432 5
Q ss_pred hHHHHHHhcccc--hhHHHHHHHHHHhhhhcCCCC----CChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---
Q 016714 204 LMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPP----TPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG--- 274 (384)
Q Consensus 204 i~~L~~~l~~~~--~~~~~~~a~~~L~~L~~~~~~----~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~--- 274 (384)
+.+.+.++.++. -|+.+......|..+...... ........++..++..+.+++.++...++.++..+...
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 667777775432 467777777777777765321 12233356677788888999999999999988887753
Q ss_pred -ChHHHHHHHHcCChHHHHHh
Q 016714 275 -PNDKIQAVIEAGVCPRLVEL 294 (384)
Q Consensus 275 -~~~~~~~~~~~g~~~~L~~l 294 (384)
+++....+.+.-.++.|...
T Consensus 199 ~~~~~~~~F~~~y~~~il~~i 219 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDI 219 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 34455555655444444443
No 339
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=62.77 E-value=23 Score=24.08 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCCh
Q 016714 222 NATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVC 288 (384)
Q Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~ 288 (384)
+.+|+.+.|--. |.........+...+...+..-++....+++|+++.+-..+.+.++.+.+...+
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl 68 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFL 68 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHH
Confidence 445666666543 444344446667777777777889999999999999988887777766654443
No 340
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=61.49 E-value=1.5e+02 Score=28.94 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=77.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcc----c---chhHHHHHHHHHHhhhhcCCC
Q 016714 163 PMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNE----H---SKLSMLRNATWTLSNFCRGKP 235 (384)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~----~---~~~~~~~~a~~~L~~L~~~~~ 235 (384)
..++..+-+.++..+..|+..|.. |. .... .++.++.++.. + .+...+.++...++-|..++.
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 344444445677777777766554 22 1211 34555555532 2 356677778888888888743
Q ss_pred CCChhhhhchHHHHHHhhcc----------CCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC
Q 016714 236 PTPFEQVKPALPILQRLIHL----------NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP 298 (384)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~----------~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~ 298 (384)
-.-..++..++|.++.++-+ +.+.++.-|+..+.+++..-...... ....+...+.+.+.++
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 33344558888988777622 23557888888999998776555544 4556677777777554
No 341
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=59.56 E-value=1.4e+02 Score=30.52 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=52.1
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHh
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNIT 357 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~ 357 (384)
+..|-.++.. +..+..++..||.++...+...-.+.+..+++.|++.|....+..+-..|+.+|.-+.
T Consensus 72 ~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 72 FDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 3444444443 4568899999999999988888889999999999999988756666666666666554
No 342
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.36 E-value=2.2e+02 Score=29.31 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=70.5
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (384)
..++..|..+-+.+=.++...++..+..|..+.+++-.. ++..+|.-|.+++..+...|-..|-+|.+..|....
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 445555555555566889999999999999888776544 467889999999999999999999999876665443
Q ss_pred HHHHcCchHHHHHHhccCC-chhHHHHHHHHHHHHhc
Q 016714 323 FVIDNGVLPCLYQLLTQNH-KKSIKKEACWTISNITA 358 (384)
Q Consensus 323 ~i~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~ 358 (384)
.+++ .+-+++-.+. +...+-.|+-+|+.+.-
T Consensus 378 Vvi~-----EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 378 VVID-----EIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred ehHH-----HHHHHHcccCccccceeehhhhhhhhHh
Confidence 3332 2333333321 22333345555555553
No 343
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=59.15 E-value=37 Score=26.40 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 016714 88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWAL 142 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L 142 (384)
.+....++.++..+++ --+...+.+.++++.+.++|.++ .++..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 7788889999998876 56777888889999999999654 4588888775
No 344
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=58.21 E-value=1.4e+02 Score=26.91 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=85.1
Q ss_pred HHHHhcCChHHHHHhhcC-----------------------CCHHHHHHHHHHHHhhhCCCCchh---------------
Q 016714 154 RVVIEHGAVPMFVQLLSS-----------------------GSDDVREQAVWALGNVAGDSPSCR--------------- 195 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~-----------------------~~~~v~~~a~~~L~nl~~~~~~~~--------------- 195 (384)
..+.+.|.||.|-+++.. ++..++.+-+..+.++|.......
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456778888888887752 123578889999999987332111
Q ss_pred ------hHHHhcCChHHHHHHhcccc-hhHHHHHHHHHHhhhhcCCCC-CChhhh--hchHHHHHHhhccC---CHhHHH
Q 016714 196 ------DLVLSSGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPP-TPFEQV--KPALPILQRLIHLN---DEEVLT 262 (384)
Q Consensus 196 ------~~i~~~g~i~~L~~~l~~~~-~~~~~~~a~~~L~~L~~~~~~-~~~~~~--~~~~~~L~~lL~~~---~~~i~~ 262 (384)
..--+.|.+..+++.+...+ +...+-..+.++-.+.++.+. ...... .|+++.++.-+-++ +..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 01113456777777775443 455666778888888888644 233333 78888888776544 356888
Q ss_pred HHHHHHHHhccCChHHHHH
Q 016714 263 DACWALSYLSDGPNDKIQA 281 (384)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~ 281 (384)
.....|+.|...+......
T Consensus 163 ~~FDLLGELiK~n~~~f~~ 181 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQR 181 (303)
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 8999999999887655443
No 345
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=57.77 E-value=23 Score=25.18 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=42.7
Q ss_pred HhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHH
Q 016714 199 LSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWAL 268 (384)
Q Consensus 199 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l 268 (384)
.+...+.|+..++....+.+++.-.+.++.++.......-..--..++..+......++..+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455778888888677788999999999998887643111111122333333334445666666665554
No 346
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=55.26 E-value=2.2e+02 Score=31.98 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=81.1
Q ss_pred CCHHHHHHhh----cCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714 117 GVVPRFVEFL----GRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 117 g~i~~Lv~lL----~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 192 (384)
..++.++.+. .+.+ +.++.-+......+-...+ ...+..++..|+..+.+++..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 4555555543 4555 7777777666666554432 22333467788888877777667899999999997554
Q ss_pred chhhHHHh-cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHH----HHHHHH
Q 016714 193 SCRDLVLS-SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVL----TDACWA 267 (384)
Q Consensus 193 ~~~~~i~~-~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~----~~a~~~ 267 (384)
. .+.. ...+..+++.+ ..-+..-.+.+...|+.|+...+.........+.-.+-+.|.+++..+. ..++..
T Consensus 506 ~---~l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 506 S---ELQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp H---HHHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 3 2221 22344444555 3334445666777788787654222222223444456677888877653 334455
Q ss_pred HHHhcc
Q 016714 268 LSYLSD 273 (384)
Q Consensus 268 l~~l~~ 273 (384)
+..++.
T Consensus 582 i~~la~ 587 (1426)
T PF14631_consen 582 IKHLAA 587 (1426)
T ss_dssp HHHTT-
T ss_pred HHHHHH
Confidence 555554
No 347
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.17 E-value=1.1e+02 Score=33.46 Aligned_cols=150 Identities=17% Similarity=0.110 Sum_probs=80.6
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHH-Hh-cCChHHHHH--hhcCCCHHHHHHHHHHHHhhhCCCCc
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVV-IE-HGAVPMFVQ--LLSSGSDDVREQAVWALGNVAGDSPS 193 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i-~~-~g~i~~L~~--lL~~~~~~v~~~a~~~L~nl~~~~~~ 193 (384)
..|.|......-- ..++..++.++.+.++........+ .+ .|.+-.... ...++..+++...+.+|.++.....+
T Consensus 797 aa~~l~t~~n~vl-~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge 875 (1610)
T KOG1848|consen 797 AAPELRTRANNVL-ASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE 875 (1610)
T ss_pred hHHHHHHHHHHHH-HHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch
Confidence 3444444333322 3455555555555555433322222 22 233333322 23346677888888888888754332
Q ss_pred hhhHHHhcCChHHHHHHhc---cc---chhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhh-ccCCHhHHHHHH
Q 016714 194 CRDLVLSSGALMPLLAQLN---EH---SKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLI-HLNDEEVLTDAC 265 (384)
Q Consensus 194 ~~~~i~~~g~i~~L~~~l~---~~---~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL-~~~~~~i~~~a~ 265 (384)
.++ +| -+.+.+++. .. ...++.+-+..+|.-++.+. +......+.++++.+..+- +..|..+--.|+
T Consensus 876 ---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi 950 (1610)
T KOG1848|consen 876 ---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAI 950 (1610)
T ss_pred ---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 112 22 333444442 11 24567788888888888776 6666777788888777765 345666655555
Q ss_pred HHHHHhcc
Q 016714 266 WALSYLSD 273 (384)
Q Consensus 266 ~~l~~l~~ 273 (384)
..++.+++
T Consensus 951 ~lfWtvsD 958 (1610)
T KOG1848|consen 951 GLFWTVSD 958 (1610)
T ss_pred HHHHHHHH
Confidence 55555543
No 348
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=54.92 E-value=19 Score=19.08 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714 345 IKKEACWTISNITAGNRAQIQVHDS 369 (384)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~i~~l~~ 369 (384)
+|..|+|+|+++. ++..+..+++
T Consensus 1 VR~~Aa~aLg~ig--d~~ai~~L~~ 23 (27)
T PF03130_consen 1 VRRAAARALGQIG--DPRAIPALIE 23 (27)
T ss_dssp HHHHHHHHHGGG---SHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CHHHHHHHHH
Confidence 5889999999887 4666666654
No 349
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.85 E-value=1e+02 Score=24.19 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=67.7
Q ss_pred hccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HHHHHHHcCchH
Q 016714 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDA-QTQFVIDNGVLP 331 (384)
Q Consensus 253 L~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~i~~~g~l~ 331 (384)
+..+|.....+.|..+.. . +..-. .++..+.+-|.+.++.++..|+..|-.++..... ....+...+++.
T Consensus 14 l~~~dw~~ileicD~In~--~-~~~~k------~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--E-PEGPQ------LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--C-CccHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 456677777888877753 1 11111 2467788889999999999999999999876543 445566678888
Q ss_pred HHHHHhcc-----CCchhHHHHHHHHHHHHh
Q 016714 332 CLYQLLTQ-----NHKKSIKKEACWTISNIT 357 (384)
Q Consensus 332 ~L~~ll~~-----~~~~~v~~~a~~~L~nl~ 357 (384)
.|++++.. ..+..|+..+.-.+..-+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 99999963 126788888766665555
No 350
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.26 E-value=82 Score=28.87 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhhcCC---CHHHHHHHHHHHHhhhCCCCchhhHHH
Q 016714 133 QLQFEAAWALTNVASGTSEHTRVVIEHG--AVPMFVQLLSSG---SDDVREQAVWALGNVAGDSPSCRDLVL 199 (384)
Q Consensus 133 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~i~ 199 (384)
.++..|..++..+.. ++.....++..+ .+..|+.+++.+ ...++..|+.+|..|+.+.....+.+.
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 455555555555544 466666777766 889999999863 468999999999999987776555443
No 351
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=53.76 E-value=15 Score=31.37 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=34.5
Q ss_pred hHHhccCCCCCCcHHHHHhHHHHHHHHHHHhhhHHHHhhhhccc
Q 016714 10 EVRKKGYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGL 53 (384)
Q Consensus 10 ~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~kr~~~l~~kR~~~~ 53 (384)
..|...||+-.+.-|.|.||.+...++.|.+|-+...+-|+...
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 36788899944556667766677999999999999999998643
No 352
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=53.13 E-value=84 Score=25.45 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=53.2
Q ss_pred cCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 201 SGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 201 ~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
.|.+...+..+....|..+...++.++.+.... ..-.......++|.+..+|.+..+....-++..+..+...
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 345556666665667888888888877755544 3344555578899999999999999888888888877654
No 353
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.95 E-value=28 Score=35.92 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHHhcCCchhHHH-----------------------------------HHhcCChHHHHHhhcC----
Q 016714 131 MPQLQFEAAWALTNVASGTSEHTRV-----------------------------------VIEHGAVPMFVQLLSS---- 171 (384)
Q Consensus 131 ~~~~~~~a~~~L~nl~~~~~~~~~~-----------------------------------i~~~g~i~~L~~lL~~---- 171 (384)
+|+++..|+.+|.|+....++++.. +...++|..|+++|+-
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 3899999999999988765444432 4456789999999974
Q ss_pred -CCHHHHHHHHHHHHhhhCCCCchhhHHHhc
Q 016714 172 -GSDDVREQAVWALGNVAGDSPSCRDLVLSS 201 (384)
Q Consensus 172 -~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~ 201 (384)
....++..|+.+|.-|+.++. +|+.+.+.
T Consensus 755 t~aD~IRalAc~~L~GLaR~~t-VrQIltKL 784 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDDT-VRQILTKL 784 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCcH-HHHHHHhC
Confidence 446899999999999998876 66665543
No 354
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=52.94 E-value=1.6e+02 Score=28.93 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=81.8
Q ss_pred cCCHHHHHHhhc--C--------CCChHHHHHHHHHHHHH--hcCCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHH
Q 016714 116 AGVVPRFVEFLG--R--------HDMPQLQFEAAWALTNV--ASGTSEHTRVVIEHGAVPMFVQLLSSG--SDDVREQAV 181 (384)
Q Consensus 116 ~g~i~~Lv~lL~--~--------~~~~~~~~~a~~~L~nl--~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~ 181 (384)
..+|..|..+.. . +-++.+|...+..|..- |..... ..+..+..-+.++ +..++..++
T Consensus 271 ~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~--------~~~~i~~~~l~~~~~~~klk~~~l 342 (501)
T PF13001_consen 271 PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP--------NILQIVFDGLYSDNTNSKLKSLAL 342 (501)
T ss_pred HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc--------cHHHHHhccccCCccccccchhcc
Confidence 346777777665 2 12267777666666542 111111 2233333344444 567777777
Q ss_pred HHH---HhhhCCCCc-----hhhHHHhcCChHHHHHHh----cccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHH
Q 016714 182 WAL---GNVAGDSPS-----CRDLVLSSGALMPLLAQL----NEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPIL 249 (384)
Q Consensus 182 ~~L---~nl~~~~~~-----~~~~i~~~g~i~~L~~~l----~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L 249 (384)
..+ .....+.+. .+..+. .++.+.+ ..- ....+...+..+-.+|+.|+...|... ...-..+..|
T Consensus 343 ~F~~~~~~~~~~~~~~~l~~l~~~i~-~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~-~~d~~li~~L 419 (501)
T PF13001_consen 343 QFIRGSSWIFKHISPQILKLLRPVIL-SQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF-SKDLSLIEFL 419 (501)
T ss_pred hhhhcchHHhhhcCHHHHHHHHHHHH-hcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCcccc-cccHHHHHHH
Confidence 666 554443322 122222 2222222 100 012356778888889999999865432 1224566666
Q ss_pred HHhhccCCHhHHHHHHHHHHHhccC
Q 016714 250 QRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 250 ~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
..-|..++++++..+-.||+.++..
T Consensus 420 F~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 420 FDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHhhCcchHHHHHHHHHHHHHHHH
Confidence 6667888899988888888887643
No 355
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=52.94 E-value=65 Score=24.08 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=47.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-----CCCChHHHHHHHHHHHHHh
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLG-----RHDMPQLQFEAAWALTNVA 146 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~~~~~~a~~~L~nl~ 146 (384)
.+..+.+.|.+.++.+++.|+..|..++.....+....+.....+..++.+.. ......++..+..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45667777888899999999999998887653444555556665555554311 1112677877777665543
No 356
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=52.85 E-value=81 Score=25.07 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 303 LIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
...|+..||.+.-|.. +..|+.+|.+. +..+...|+-+|+|..-
T Consensus 80 ~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN-----------VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SSTT-----------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCCc-----------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 3446666665554332 44567777766 67777777777777653
No 357
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=52.85 E-value=72 Score=25.10 Aligned_cols=74 Identities=8% Similarity=0.023 Sum_probs=51.3
Q ss_pred cCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH-HHHhhcCCC--ChHHHHHHHHHHHHHhc
Q 016714 74 ESIPSMVQGVWS-EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPR-FVEFLGRHD--MPQLQFEAAWALTNVAS 147 (384)
Q Consensus 74 ~~l~~lv~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~-Lv~lL~~~~--~~~~~~~a~~~L~nl~~ 147 (384)
+++..+.+.|++ .++.+++.|+..+..++.........++...+.+.. |+.++.... ...++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 356777777774 578888888888887776543344555667788886 888886321 25778877777766654
No 358
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=52.33 E-value=66 Score=29.49 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHcC--ChHHHHHhcCCC---ChhhHHHHHHHHHHhhcCChHHHHHH------HHcCchH
Q 016714 263 DACWALSYLSDGPNDKIQAVIEAG--VCPRLVELLMHP---SATVLIPALRTVGNIVTGDDAQTQFV------IDNGVLP 331 (384)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~g--~~~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~i------~~~g~l~ 331 (384)
.|+.++.++. ........+...+ ++..|++++..+ ...++..|+++|..|+.......+.+ +.+|++.
T Consensus 241 lAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~ 319 (329)
T PF06012_consen 241 LAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILP 319 (329)
T ss_pred HHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHH
Confidence 3444444443 3444555666666 999999999764 35789999999999998655443322 2457777
Q ss_pred HHHHH
Q 016714 332 CLYQL 336 (384)
Q Consensus 332 ~L~~l 336 (384)
.+++-
T Consensus 320 ~llR~ 324 (329)
T PF06012_consen 320 QLLRK 324 (329)
T ss_pred HHHHH
Confidence 76654
No 359
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.16 E-value=31 Score=29.09 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=44.5
Q ss_pred HHHcCCHHHHHHhhcCCCC-----------------hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHH
Q 016714 113 VIKAGVVPRFVEFLGRHDM-----------------PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDD 175 (384)
Q Consensus 113 ~~~~g~i~~Lv~lL~~~~~-----------------~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~ 175 (384)
+.+.|++..++++|..+-. ..+...+...|...+.++.++...+.+. ++.++..+......
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~ 116 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIG 116 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhcc
Confidence 3456677777766653210 3567788899999999998888888763 44444443332222
Q ss_pred HHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC
Q 016714 176 VREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 234 (384)
Q Consensus 176 v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~ 234 (384)
.--.+..+|..+..+++.....+.+. .+..++.++..+. -....+..|+.+|...
T Consensus 117 ~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~g---r~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 117 YGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHG---RQPRYLDFLSSLCVCN 171 (207)
T ss_dssp TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred CCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcC---CChHHHHHHhhhcccC
Confidence 22345667777888887766665544 4788888885433 1123444556666543
No 360
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.72 E-value=2.3e+02 Score=27.24 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=55.5
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHH---HHHHHHHHhc-C
Q 016714 76 IPSMVQGVWS---EDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFE---AAWALTNVAS-G 148 (384)
Q Consensus 76 l~~lv~~l~s---~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~---a~~~L~nl~~-~ 148 (384)
+..|...+.. .+.+...+++..+-..+...-.+....+++ .++..+....+++.+|..-.. +..++-..+. .
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4555666654 334555666544443433321222333332 255555555566666765544 4444433333 2
Q ss_pred CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhC
Q 016714 149 TSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAG 189 (384)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 189 (384)
+++... -.+...+|.+...|..+-.+....+...|+-+..
T Consensus 107 ~~~~v~-~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 107 DPEAVS-QFEEALFPPFQEILQQDVQEFIPYVFQILAQLLE 146 (435)
T ss_dssp GHH----HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHH
T ss_pred ChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 3344678999999998777777777767666653
No 361
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=50.86 E-value=1.1e+02 Score=23.17 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=46.1
Q ss_pred hhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc-CCCChhh-HHHHHHHHHHhhcCC
Q 016714 242 VKPALPILQRLIH-LNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL-MHPSATV-LIPALRTVGNIVTGD 317 (384)
Q Consensus 242 ~~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL-~~~~~~v-~~~a~~~l~nl~~~~ 317 (384)
+..++|.+.+.|. +..++.+..+.-+++.|+...+-.. .++..+++.+ .+....- ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3567899999998 7789999999999999987643211 2233333333 3322222 478888999888543
No 362
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=50.13 E-value=31 Score=27.32 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH--HHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhH
Q 016714 76 IPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDE--VIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHT 153 (384)
Q Consensus 76 l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~--~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~ 153 (384)
...++.+|+.+........+..|.+-+ +|.++. -++.+.+..++.-=.... .--+..|...|+.+-.|
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV----~PGVD~AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GG----- 93 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRV----PPGVDEAAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGG----- 93 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS------TT-HHHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SS-----
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcC----CCCCChHHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCC-----
Confidence 467788887665443333444444332 333333 234444443333211111 23366677777766554
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
=-+..|+.+|.+++..+...|+.+|.+..
T Consensus 94 ------YNV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 94 ------YNVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp ------TTHHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred ------CcHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 13899999999999999999999999864
No 363
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=50.10 E-value=1.7e+02 Score=27.38 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 174 DDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 174 ~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
..-+..|...+.+.....|...+. +++.-+.+. .+.|..+++.|..-|-.+|.+
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccC
Confidence 445566667777777666654333 455556666 666777888888888777776
No 364
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=50.02 E-value=1.5e+02 Score=27.62 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=71.2
Q ss_pred hccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHcCchH
Q 016714 253 IHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQ-TQFVIDNGVLP 331 (384)
Q Consensus 253 L~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~i~~~g~l~ 331 (384)
...+++++.-++|.-++.=.++.. .++..+.+-|.+.++.|...|+..++.++..+... ...|-...+..
T Consensus 21 nT~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred cccccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 455678888888877766443322 34678889999999999999999999998776543 34455567888
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 332 CLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 332 ~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.|..++.+...+.+++...-++.+.+.
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 888898844377888877777766664
No 365
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.45 E-value=1.2e+02 Score=28.30 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=78.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc-hhH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS-EHT 153 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~~ 153 (384)
.+..++..+++.+..++..|+..+..++.. .+..-..--..+++.+..+..+.+ ..++......+-++..... +..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s--~p~~l~~~~~~ll~~~~~~i~D~~-~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS--HPAELQSHLYALLQKLRELILDDD-SLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHh--ChHHHHHHHHHHHHHhhhhhcCcc-ccHHHHHHHHHHHHHhhcchhhh
Confidence 578899999999999999999999999874 233333334566777888777766 6777777777776544211 111
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC
Q 016714 154 RVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP 192 (384)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 192 (384)
..++. =.++++-..+.+-.++++.-++..|.-+....+
T Consensus 136 sp~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 136 SPMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred cchHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 11111 124555555666788999999988888876554
No 366
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=48.12 E-value=1.1e+02 Score=29.82 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=49.6
Q ss_pred HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-------------chhHHHHHhcCChHHHHHhhcC-CCHH
Q 016714 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGT-------------SEHTRVVIEHGAVPMFVQLLSS-GSDD 175 (384)
Q Consensus 110 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~-------------~~~~~~i~~~g~i~~L~~lL~~-~~~~ 175 (384)
.+.+.+.++|+.|+.+|+...+++++..|+.+|..|..-+ ..-...+.....+..|+..+-. ....
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 4445578999999999986656889999998887764421 2233444555566666664432 2344
Q ss_pred HHHHHHHHHHhhh
Q 016714 176 VREQAVWALGNVA 188 (384)
Q Consensus 176 v~~~a~~~L~nl~ 188 (384)
....++.++..+.
T Consensus 135 ~lvn~v~IlieLI 147 (475)
T PF04499_consen 135 SLVNGVSILIELI 147 (475)
T ss_pred hHHHHHHHHHHHH
Confidence 4455555555554
No 367
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.88 E-value=3.4e+02 Score=28.15 Aligned_cols=125 Identities=14% Similarity=0.045 Sum_probs=84.4
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHH
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL--MHPSATVLIPALRTVGNIVTGDDAQ 320 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (384)
.+++..+..++..-..+-....+.++..+...++ ........++++.+..-. +.+.|.+...-+.+++.+.-.+++.
T Consensus 739 ~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~ 817 (978)
T KOG1993|consen 739 FGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSL 817 (978)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHH
Confidence 6777888888876666666777777777765544 445556678888877665 4556778888889999998877766
Q ss_pred HHHHHHc---------CchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 321 TQFVIDN---------GVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 321 ~~~i~~~---------g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
...+.+. .++..-+.+..+-..++-||--+.+++.+...+...+....
T Consensus 818 ~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~ 874 (978)
T KOG1993|consen 818 FMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVL 874 (978)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHH
Confidence 6555432 23333444455544788899999999999885433344433
No 368
>PLN03205 ATR interacting protein; Provisional
Probab=47.74 E-value=49 Score=30.80 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=70.7
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChHHHHHHHHcCChHH---HHHhc-CCCChhhHHHHHHHHHHhhc
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDG---PNDKIQAVIEAGVCPR---LVELL-MHPSATVLIPALRTVGNIVT 315 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~---~~~~~~~~~~~g~~~~---L~~lL-~~~~~~v~~~a~~~l~nl~~ 315 (384)
..+++.|+.+..-++..+...+++.|..+..+ +....+.-.+.+++.. +.+.- .+....++..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 45566666666666666777777666555432 2222222233343332 22221 34567788889988888876
Q ss_pred CChHH--HHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 316 GDDAQ--TQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 316 ~~~~~--~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.++.. ...+....+++.+.++|.......++|+|.-.|.-+.-
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 55433 34455556788899999877678899998776654443
No 369
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.74 E-value=91 Score=30.10 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=68.8
Q ss_pred HhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHcCc
Q 016714 251 RLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ-FVIDNGV 329 (384)
Q Consensus 251 ~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~i~~~g~ 329 (384)
..|..+|+.+-.+.|..|..--.+.. .++..|.+.+.+.++.++..|+..|--++..+..... .|.+.++
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566777777777777655333332 3467788888888889999999988888876665554 6778899
Q ss_pred hHHHHHHhccC-CchhHHHHHHHHHH
Q 016714 330 LPCLYQLLTQN-HKKSIKKEACWTIS 354 (384)
Q Consensus 330 l~~L~~ll~~~-~~~~v~~~a~~~L~ 354 (384)
++-++.+.... .+..||+.+.-.|-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHH
Confidence 99999988876 57788888755443
No 370
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=46.96 E-value=2.2e+02 Score=25.74 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=83.4
Q ss_pred hHHHhcCChHHHHHHhcc----------------------cchhHHHHHHHHHHhhhhcCCCCC----------------
Q 016714 196 DLVLSSGALMPLLAQLNE----------------------HSKLSMLRNATWTLSNFCRGKPPT---------------- 237 (384)
Q Consensus 196 ~~i~~~g~i~~L~~~l~~----------------------~~~~~~~~~a~~~L~~L~~~~~~~---------------- 237 (384)
..+.+.|.++.|-+++.. +++..+....+..+.++|+..+..
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456677777776666621 112236667788888888833110
Q ss_pred ------ChhhhhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChH-HHH-HHHHcCChHHHHHhcCCC---ChhhHH
Q 016714 238 ------PFEQVKPALPILQRLIHL--NDEEVLTDACWALSYLSDGPND-KIQ-AVIEAGVCPRLVELLMHP---SATVLI 304 (384)
Q Consensus 238 ------~~~~~~~~~~~L~~lL~~--~~~~i~~~a~~~l~~l~~~~~~-~~~-~~~~~g~~~~L~~lL~~~---~~~v~~ 304 (384)
....-.|.+..+++.+.. .+...+...+.|+-....+.+. ..+ .+.+.|+++.++.-+-++ +..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 011115666666666643 3566788888888888887665 233 567889999999988654 346888
Q ss_pred HHHHHHHHhhcCChHHHH
Q 016714 305 PALRTVGNIVTGDDAQTQ 322 (384)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~ 322 (384)
.+.-.||-+..++.....
T Consensus 163 ~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 899999999988875544
No 371
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.90 E-value=97 Score=32.44 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=62.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHH---hcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCch
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKL---LSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSE 151 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l---~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~ 151 (384)
.+.+-+.+|.+.+..+|.+++..+... +.. .++.-.-.-.-.-|.++..+...+ |-+...|..|+.+++....+
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~--~~n~LlPlvhq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLAT--YHNLLLPLVHQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhc--cchhHhHHHHhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhh
Confidence 456666778888999999999888743 222 222111112345788899888888 89999999999999886555
Q ss_pred hHHHHHhcCChHHHHHhhc
Q 016714 152 HTRVVIEHGAVPMFVQLLS 170 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~ 170 (384)
....-+-...+|.+-.++.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4443333456777766554
No 372
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=45.34 E-value=1.3e+02 Score=29.22 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=52.2
Q ss_pred hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhC---CC----------CchhhHHHhcCChHHHHHHhcccchh
Q 016714 152 HTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAG---DS----------PSCRDLVLSSGALMPLLAQLNEHSKL 217 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~---~~----------~~~~~~i~~~g~i~~L~~~l~~~~~~ 217 (384)
..+.+.+.+.|+.|+.+|.. .+..++..|+.+|..|.. +. ...-..+.....+..|+..+......
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 33445568999999999974 567888888888887753 11 11223344555677777766542335
Q ss_pred HHHHHHHHHHhhhhcC
Q 016714 218 SMLRNATWTLSNFCRG 233 (384)
Q Consensus 218 ~~~~~a~~~L~~L~~~ 233 (384)
....+++.++-.|.+.
T Consensus 134 s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 134 SSLVNGVSILIELIRK 149 (475)
T ss_pred chHHHHHHHHHHHHHh
Confidence 5566677666666654
No 373
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.09 E-value=1.8e+02 Score=27.21 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=83.7
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC-hHHHHHH
Q 016714 204 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP-NDKIQAV 282 (384)
Q Consensus 204 i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~-~~~~~~~ 282 (384)
+..|+..+ .+.+..++..+...|..+....|.........+++.+..+....+..++.....++-++.... .+....+
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 45566667 677888999998888877766444333344677888888888888888888888877754332 2221121
Q ss_pred HHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHHcCchHHHHHHhc
Q 016714 283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD-DAQTQFVIDNGVLPCLYQLLT 338 (384)
Q Consensus 283 ~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~g~l~~L~~ll~ 338 (384)
+ .=+++.+-..+.+-.+.++..++..+.-++... |........ +++.+..++.
T Consensus 139 ~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 139 V-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred H-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 1 123455555567778899999999999887654 433333332 4444444443
No 374
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.85 E-value=3.3e+02 Score=26.89 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=47.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 016714 289 PRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNR 361 (384)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 361 (384)
..+-..+-.+++.++...-.++|-+...+|+. ++++.|-+..... +-++.-.+.++++-+.+|+.
T Consensus 644 Rhf~h~mhyg~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd~-dl~v~~ntIfamGLiGAGT~ 708 (881)
T COG5110 644 RHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHDG-DLNVIINTIFAMGLIGAGTL 708 (881)
T ss_pred HHhhhHhhcCcHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhcccc-chhHHHHHHHHhhccccCcc
Confidence 44444555677888888888888887766644 3566777777777 88888899999998888643
No 375
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=43.68 E-value=9.2 Score=32.84 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhh
Q 016714 28 RREDNLVEIRKNKREDNLLKKRR 50 (384)
Q Consensus 28 ~r~~~~~~lRk~kr~~~l~~kR~ 50 (384)
-|+.++.++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 35567889999999999999997
No 376
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=43.32 E-value=65 Score=22.81 Aligned_cols=67 Identities=7% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHH
Q 016714 114 IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLL----SSGSDDVREQAVWALG 185 (384)
Q Consensus 114 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~ 185 (384)
.+..++.++..++.+..+.++|...+.|+..+..... .-+..| =+.+...+ .++++.+...|..++-
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455677888876655448999999999999876422 233444 33444433 3456777777766543
No 377
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.27 E-value=4.1e+02 Score=27.72 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.8
Q ss_pred HhhhcCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 016714 70 EKKLESIPSMVQGVWSEDPALQLEATTQFRKLLSIE 105 (384)
Q Consensus 70 ~~~~~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~ 105 (384)
++-+..+|.++..|+++...+--.|+.++.+++...
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 345677899999999999999999999999998765
No 378
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=42.22 E-value=1e+02 Score=24.46 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=72.2
Q ss_pred CCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh---hhhhchHHHHHHh-hccCCHhHHHHHHH
Q 016714 191 SPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF---EQVKPALPILQRL-IHLNDEEVLTDACW 266 (384)
Q Consensus 191 ~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~~~~L~~l-L~~~~~~i~~~a~~ 266 (384)
++.+=+.+++...+..+++.+.......+....+.+++-|..+-..+.. ..-.+.+..++.. +.-+|+++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 3446678888899999999997656666777777777766665422221 1224455444333 34457777776666
Q ss_pred HHHHhccC-ChHHHHHHHH--cCChHHH---HHhcCCCChhhHHHHHHHHHHh
Q 016714 267 ALSYLSDG-PNDKIQAVIE--AGVCPRL---VELLMHPSATVLIPALRTVGNI 313 (384)
Q Consensus 267 ~l~~l~~~-~~~~~~~~~~--~g~~~~L---~~lL~~~~~~v~~~a~~~l~nl 313 (384)
.|-.++-. +.+.++.+.+ .+-.|.+ +++..++++.++..+-.++-|+
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 66555532 2223333333 2344444 5555788877777666555554
No 379
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=42.06 E-value=33 Score=28.96 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=36.7
Q ss_pred hhHHHhcCChHHHHHHhcccc-----------------hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCC
Q 016714 195 RDLVLSSGALMPLLAQLNEHS-----------------KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLND 257 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~~~-----------------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~ 257 (384)
+..+.+.|++..++.+|...- -..+...+...|..+|++. ......+...++.+...+....
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n-~~NQ~~l~~~~~~l~~~~~~~~ 114 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGN-RENQKYLFKHLDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHhHHHHHHHHhh
Confidence 344555666666666663211 1356778888888888874 2223333444443333332211
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 016714 258 EEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTG 316 (384)
Q Consensus 258 ~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (384)
...-..+..++..+..++.+....+.+. .+..++.++..... ...-+..|+.++..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr--~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGR--QPRYLDFLSSLCVC 170 (207)
T ss_dssp H-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCC--ChHHHHHHhhhccc
Confidence 1111234445555555555544444433 37777777765321 22355566666543
No 380
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=39.75 E-value=1.9e+02 Score=22.81 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=46.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF 239 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (384)
..-..+..+|.+++++++..|+.||...- .+ .+..+ -+.|-+++. +..++.. +..+. +.........
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~----~l~pY--~d~L~~Lld---d~~frde-L~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK--DP----YLTPY--KDNLENLLD---DKTFRDE-LTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH----HHHhH--HHHHHHHcC---cchHHHH-HHhhc-ccCCcCCCCH
Confidence 44567788999999999999999998752 11 11111 134444551 2223333 22221 2222233344
Q ss_pred hhhhchHHHHHHhhc
Q 016714 240 EQVKPALPILQRLIH 254 (384)
Q Consensus 240 ~~~~~~~~~L~~lL~ 254 (384)
+-...++|.++.+|.
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 445788999998884
No 381
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.31 E-value=5.9e+02 Score=28.44 Aligned_cols=254 Identities=13% Similarity=0.161 Sum_probs=128.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH---H-HHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPR---F-VEFLGRHDMPQLQFEAAWALTNVASGTS 150 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~---L-v~lL~~~~~~~~~~~a~~~L~nl~~~~~ 150 (384)
.+..+++.|...|+.++..|+..+..+.... ..+... |++|. + .++..+++ ..+|..+-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~---~~e~~~--~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTS---DTEELK--GILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccc---cchHHh--hhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999997643 222222 23433 3 33445566 8999999999988876322
Q ss_pred hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcC--ChHHHHHHhcc---------------
Q 016714 151 EHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSG--ALMPLLAQLNE--------------- 213 (384)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~~l~~--------------- 213 (384)
.......+ ..+|...-.-.+....+-..|...+-....... .+......+ +...+.+.+..
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek-~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK-DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcChhh-hHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22122222 233333333334444555555555554433221 222222211 11222222100
Q ss_pred ---cchhHHHHHHHHHHhhhhcCC-CCCCh----hhhhchH--HHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 016714 214 ---HSKLSMLRNATWTLSNFCRGK-PPTPF----EQVKPAL--PILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVI 283 (384)
Q Consensus 214 ---~~~~~~~~~a~~~L~~L~~~~-~~~~~----~~~~~~~--~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~ 283 (384)
.....+...++-++.-+.... +.... ......+ ..+.+++.+..+.+......++..+++.-....-. .
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~-~ 272 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVME-S 272 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcch-h
Confidence 001123444444544444321 11111 1122222 36778888899999999999999888764433111 1
Q ss_pred HcCCh-HHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHH--HHHHcCchHHHHHHhc
Q 016714 284 EAGVC-PRLVELLMHPSATVLIPALRTVGNIVTG-DDAQTQ--FVIDNGVLPCLYQLLT 338 (384)
Q Consensus 284 ~~g~~-~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~--~i~~~g~l~~L~~ll~ 338 (384)
+...+ +.+.....+.+ .+.......+.+.... .++-.. -....|+++.+..++.
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 12223 33333334444 3333444444422222 222211 1245578888888887
No 382
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=39.17 E-value=3.6e+02 Score=25.98 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChHH---HHHHHHc-CChHHH
Q 016714 217 LSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIH-LNDEEVLTDACWALSYLSDGPNDK---IQAVIEA-GVCPRL 291 (384)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~i~~~a~~~l~~l~~~~~~~---~~~~~~~-g~~~~L 291 (384)
.++.+.....+..+|...|.........+++.+-..-. +...++-...+|+||.-+...-+. .+.+.+. ..++.+
T Consensus 282 ~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~l 361 (459)
T PF14764_consen 282 AEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEAL 361 (459)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHH
Confidence 45666666666677766554433333444444333222 234678999999999877543222 2222111 122322
Q ss_pred H-HhcCCC----------ChhhHHHHHHHHHHhhcCChHHHHHH
Q 016714 292 V-ELLMHP----------SATVLIPALRTVGNIVTGDDAQTQFV 324 (384)
Q Consensus 292 ~-~lL~~~----------~~~v~~~a~~~l~nl~~~~~~~~~~i 324 (384)
. +..++. .+.+..-.+.++..+++...+.+..+
T Consensus 362 lyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv 405 (459)
T PF14764_consen 362 LYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRV 405 (459)
T ss_pred HHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHH
Confidence 2 222211 23455566677778877776665443
No 383
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.81 E-value=1.8e+02 Score=22.30 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCC-hHHHHHHHHc-CchHHHHHHhc
Q 016714 261 LTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGD-DAQTQFVIDN-GVLPCLYQLLT 338 (384)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~i~~~-g~l~~L~~ll~ 338 (384)
-.+.+.-|..++..+..... .+++.|.+-|++.++.|+.-++++|-.+|... +.....+... ..+..+...--
T Consensus 18 pgy~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 18 PGYLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred chHHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 34444455566555443332 34678899999999999999999999998654 4444444432 23333333222
Q ss_pred cC-----C--chhHHHHHHHHHHHHhc
Q 016714 339 QN-----H--KKSIKKEACWTISNITA 358 (384)
Q Consensus 339 ~~-----~--~~~v~~~a~~~L~nl~~ 358 (384)
.. + ...||.+|--++.-|..
T Consensus 93 ~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 93 PPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 11 0 24677777666665543
No 384
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.55 E-value=3.3e+02 Score=30.15 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc----C---CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCCh
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS----S---GSDDVREQAVWALGNVAGDSPSCRDLVLSSGAL 204 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----~---~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i 204 (384)
.+++.....++.++....-+. ++. | =+.+..+++ . ...++...+..+|.-++.|.-+.-..-.-.+.+
T Consensus 856 ~evr~~sl~~l~silet~ge~---ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEH---LLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchh---hcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 567777777887776532221 111 2 333333333 2 246777888888888877653222222233456
Q ss_pred HHHHHHhcccchhHHHHH---HHHHHhhhhc
Q 016714 205 MPLLAQLNEHSKLSMLRN---ATWTLSNFCR 232 (384)
Q Consensus 205 ~~L~~~l~~~~~~~~~~~---a~~~L~~L~~ 232 (384)
+.+...-.+..|..+--. ..|+++....
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~ 961 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLK 961 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence 666666655555544333 3455444433
No 385
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=38.54 E-value=4.2e+02 Score=26.53 Aligned_cols=97 Identities=16% Similarity=0.065 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCCh--hhhhchHHHH
Q 016714 172 GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPF--EQVKPALPIL 249 (384)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~~~~L 249 (384)
-++.++..|+..|+--++.-|. .+....++.+.--.| .+.+..++.....++-.||...|.... ......-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4577888888888777666553 344333444333344 566788999999999999998776652 2224555567
Q ss_pred HHhhccCCHhHHHHHHHHHHHhc
Q 016714 250 QRLIHLNDEEVLTDACWALSYLS 272 (384)
Q Consensus 250 ~~lL~~~~~~i~~~a~~~l~~l~ 272 (384)
+.++..+..-++..++..+.++.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 77776655558877777776664
No 386
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.17 E-value=55 Score=24.70 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=31.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHH
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVL 199 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~ 199 (384)
+++.|+.-|.+++++|...|+.+|...|.+. .+-+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999999877 3434444
No 387
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=37.32 E-value=4.1e+02 Score=27.44 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 016714 87 DPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASG 148 (384)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~ 148 (384)
++.+.-.++.+++.++| =-.+..+++.-.++.|.+++.. ++++.+|+.|+..+.+.
T Consensus 206 npgl~~~cLdc~g~fVS---WIdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVS---WIDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSK 261 (980)
T ss_pred CchHHHHHHHHHHHHhh---hhhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhc
Confidence 77788888888888775 3445566677788888888873 78999999999988764
No 388
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=36.12 E-value=62 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.1
Q ss_pred CCCcHHHHHh
Q 016714 19 GVDADEARRR 28 (384)
Q Consensus 19 ~~~~~~~r~~ 28 (384)
..|++|+|+|
T Consensus 10 k~DPeE~k~k 19 (51)
T PF15178_consen 10 KMDPEEMKRK 19 (51)
T ss_pred CCCHHHHHHH
Confidence 4788888763
No 389
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.08 E-value=1.2e+02 Score=28.17 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=53.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCC-chhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 160 GAVPMFVQLLSSGSDDVREQAVWALGNVAGDSP-SCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
.++..+.+-|.+.++.|.-+|+..|..++.++. .+|..+....+...|..++.+..++.+.....-++.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 357778888889999999999999999886653 3666677777777787887545566666666666655555
No 390
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.69 E-value=23 Score=25.45 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=23.3
Q ss_pred hHHhccCCC-CCCcHHHHHhHHHHHHHHHH
Q 016714 10 EVRKKGYKT-GVDADEARRRREDNLVEIRK 38 (384)
Q Consensus 10 ~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk 38 (384)
.+|-.-|++ --|+.|.||||-+.+...++
T Consensus 68 gDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 68 GDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 467788999 78999999999887755544
No 391
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.29 E-value=95 Score=27.89 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=29.8
Q ss_pred HHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCc
Q 016714 114 IKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTS 150 (384)
Q Consensus 114 ~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~ 150 (384)
.+...+..+++-|..++ ...+..|+.+|.-++.|.-
T Consensus 57 ~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~ 92 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTW 92 (293)
T ss_pred hHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCc
Confidence 34567888999998887 8899999999999988743
No 392
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.45 E-value=3.8e+02 Score=27.48 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhc
Q 016714 190 DSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 232 (384)
Q Consensus 190 ~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~ 232 (384)
-.|.+|..+.+.|++..+++.|.++.....+.-+..+|..|..
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs 405 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLS 405 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 3467899999999999999999766554444444445554444
No 393
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.79 E-value=90 Score=30.10 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=53.3
Q ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CChHHHHHHHHHHHH
Q 016714 74 ESIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRH-DMPQLQFEAAWALTN 144 (384)
Q Consensus 74 ~~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~n 144 (384)
+++..|.+.+++.++.+++.|+..|.-++..+.......+.+.++++.+|...+.. .+..+|..++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 45677788888888999999999888776654233344688899999999998765 446888877776643
No 394
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=33.76 E-value=7.4e+02 Score=28.83 Aligned_cols=106 Identities=8% Similarity=0.010 Sum_probs=58.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHhhhCCCCch
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS---GSDDVREQAVWALGNVAGDSPSC 194 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~ 194 (384)
+-..|.....++. +.+-..++.++.++...-....+.=++.-.-..++.++.+ ++.+-++.++.+|..||.++...
T Consensus 409 Lc~sL~~n~~S~~-~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~l 487 (1780)
T PLN03076 409 LCLSLLKNSASSL-MIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQIL 487 (1780)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHH
Confidence 3334444434444 6677777777777655322222222221112334566654 34688899999999999887755
Q ss_pred hhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcC
Q 016714 195 RDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 195 ~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~ 233 (384)
-+..++..+ +-....+.+..+..|+..+.+
T Consensus 488 veiyvNYDC---------D~~~~NifE~lv~~Lsk~a~~ 517 (1780)
T PLN03076 488 VDIFINYDC---------DVNSSNIFERMVNGLLKTAQG 517 (1780)
T ss_pred HHHHhccCC---------CCCCchHHHHHHHHHHHHhcC
Confidence 555444322 112345566666666666654
No 395
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=33.57 E-value=2.8e+02 Score=23.09 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=81.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHH-HHHHHhhhCCCCchhhH
Q 016714 120 PRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-GSDDVREQA-VWALGNVAGDSPSCRDL 197 (384)
Q Consensus 120 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~~~~ 197 (384)
..+..++.++. .+.+..|+.++......... ..++.+-.++.. ++-.+.... ..+++.+....+
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~----- 119 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP----- 119 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG-----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH-----
Confidence 34455666666 78888888887653321010 124445555543 455566555 445555532111
Q ss_pred HHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChH
Q 016714 198 VLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPND 277 (384)
Q Consensus 198 i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~ 277 (384)
...+.+..-+ .+.++-.++.++-++...... .....++..+...+.+++..++..+.|+|..++..+++
T Consensus 120 ----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 120 ----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 1223333444 666776777776555444433 23345666667777888899999999999999998887
Q ss_pred HHHHHHHc
Q 016714 278 KIQAVIEA 285 (384)
Q Consensus 278 ~~~~~~~~ 285 (384)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665554
No 396
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=33.36 E-value=4.2e+02 Score=24.97 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------------CCChHHHHHHHHHH
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGR------------HDMPQLQFEAAWAL 142 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~------------~~~~~~~~~a~~~L 142 (384)
++..-+..+..+|..++.+|++.|-.++.++ ... -+.+.|+++|.. .+ ..+++.+..-|
T Consensus 62 a~da~~d~~ed~d~~ir~qaik~lp~fc~~d---~~~-----rv~d~l~qLLnk~sl~~Lf~~~~~~D-~~irek~l~fi 132 (460)
T KOG2213|consen 62 AIDAQLDLCEDDDVGIRRQAIKGLPLFCKGD---ALS-----RVNDVLVQLLNKASLTGLFGQIEVGD-EQIREKVLKFI 132 (460)
T ss_pred HHHhhhccccccchhhHHHHHhccchhccCc---hhh-----hhHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHH
Confidence 3445555666788899999999998776542 211 134555555542 23 45555444433
Q ss_pred HH-HhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCC-CchhhHHHhc-CChHHHHHH--hcccchh
Q 016714 143 TN-VASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDS-PSCRDLVLSS-GALMPLLAQ--LNEHSKL 217 (384)
Q Consensus 143 ~n-l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~-g~i~~L~~~--l~~~~~~ 217 (384)
.. +-.-..+....-++.-++..+-..|.+-..+-....+..|+++...+ ..-+..+.+. .....+-.+ + ..+|.
T Consensus 133 ~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf-~~sD~ 211 (460)
T KOG2213|consen 133 RTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAF-NVSDA 211 (460)
T ss_pred HHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcc-cCCCh
Confidence 22 22222333333333334444444444433444455666666665432 1111111110 000111111 2 22233
Q ss_pred HHHH----HHHHHHhhhhcCCCCCChhhh--hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHH
Q 016714 218 SMLR----NATWTLSNFCRGKPPTPFEQV--KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRL 291 (384)
Q Consensus 218 ~~~~----~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L 291 (384)
+.+. .+..++-.++++.|...+... ..++|. .......+.+-+.+.+|+.++...... .. ...+|.+
T Consensus 212 d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~fdkl~e~rkL~lLK~lAEMss~ttaq--~a--~q~Lpsi 284 (460)
T KOG2213|consen 212 DYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFDKLTEERKLDLLKALAEMSSYTTAQ--AA--RQMLPSI 284 (460)
T ss_pred HHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---ccccchHHHHHHHHHHHHHhCccchHH--HH--HHHHHHH
Confidence 3333 333333445555443322211 222232 011112678888899999988776322 21 1335666
Q ss_pred HHhc
Q 016714 292 VELL 295 (384)
Q Consensus 292 ~~lL 295 (384)
+++|
T Consensus 285 ~elL 288 (460)
T KOG2213|consen 285 VELL 288 (460)
T ss_pred HHHH
Confidence 6655
No 397
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.32 E-value=2.2e+02 Score=21.78 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHhC
Q 016714 304 IPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA-GNRAQIQVHDSF 370 (384)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~i~~l~~~ 370 (384)
-..+.=|++++..+...... +++.|.+=|++. ++.|+..+..+|-.++. |+++....+..+
T Consensus 19 gy~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 34455566666665444443 556788888887 89999999999999997 776766655544
No 398
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=33.01 E-value=2.4e+02 Score=22.12 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=50.0
Q ss_pred ChHHHHHhhc-CCCHHHHHHHHHHHHhhhCCC-CchhhHHHhcCChHH-HHHHhccc--chhHHHHHHHHHHhhhhcC
Q 016714 161 AVPMFVQLLS-SGSDDVREQAVWALGNVAGDS-PSCRDLVLSSGALMP-LLAQLNEH--SKLSMLRNATWTLSNFCRG 233 (384)
Q Consensus 161 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~i~~~g~i~~-L~~~l~~~--~~~~~~~~a~~~L~~L~~~ 233 (384)
++..|.+-|. +.++.++..|+..|-.+..++ ..+...+...+++.. |++++... .+..+...++..+...+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 4555666555 467888888888888877654 346677777888887 88888532 2456777777777666654
No 399
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.99 E-value=1.4e+02 Score=22.48 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=31.9
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIE 158 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~ 158 (384)
+++.|+.-|.+++ +++...|..+|...+.+. ...+.++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788888888888 899999999999999864 66666654
No 400
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=32.77 E-value=1.6e+02 Score=32.15 Aligned_cols=109 Identities=15% Similarity=0.048 Sum_probs=63.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChh
Q 016714 161 AVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFE 240 (384)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (384)
..|.+..++.+.+..++..|+.+++-++.... ++.... .++.++.++....+..-+..+...+..++.........
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~--~e~m~~--v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSAT--RETMAT--VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 46777777788899999999999999875542 222221 34444444422222222333333444444432222222
Q ss_pred hhhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 016714 241 QVKPALPILQRLIHLNDEEVLTDACWALSYLSD 273 (384)
Q Consensus 241 ~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~ 273 (384)
+..-+++.|...+......++..+..+++.+.-
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 334456667777777778888888888777653
No 401
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=32.75 E-value=34 Score=20.43 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=25.3
Q ss_pred HHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHH
Q 016714 267 ALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRT 309 (384)
Q Consensus 267 ~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~ 309 (384)
+|+.+...++.. +....+...+...|.++++.++..|+.+
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 344454444321 2223556777888888999999888764
No 402
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.58 E-value=86 Score=28.20 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=42.8
Q ss_pred HcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-------HHH-------HHHHHcCchHHHHHHhcc
Q 016714 284 EAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDD-------AQT-------QFVIDNGVLPCLYQLLTQ 339 (384)
Q Consensus 284 ~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-------~~~-------~~i~~~g~l~~L~~ll~~ 339 (384)
+...+..++.-|.+.+...+..|+++|..++.|.- ++. ..+.+.|+++.|..+|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34567888889988888899999999999987632 333 234567999999998864
No 403
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=32.11 E-value=2.3e+02 Score=23.98 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=48.5
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITAGNRAQIQVH 367 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~i~~l 367 (384)
.+.+..+..+++.-.+..|+.+.-......+ .+. +...+..++.++ +.-|++...|+|..++..+++.+...
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~~~-----l~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTD--TDL-----LFEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--HHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4567777788888777777654333222111 111 123344455566 88899999999999999777776666
Q ss_pred HhCC
Q 016714 368 DSFH 371 (384)
Q Consensus 368 ~~~~ 371 (384)
++.+
T Consensus 189 l~~~ 192 (208)
T cd07064 189 VAAH 192 (208)
T ss_pred HHHh
Confidence 6543
No 404
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.06 E-value=2.7e+02 Score=22.37 Aligned_cols=91 Identities=11% Similarity=0.207 Sum_probs=57.7
Q ss_pred HHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHH-HhccCC-chhHHHHHHHHHHHHhc
Q 016714 281 AVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQ-LLTQNH-KKSIKKEACWTISNITA 358 (384)
Q Consensus 281 ~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~-ll~~~~-~~~v~~~a~~~L~nl~~ 358 (384)
.+++..+++.+.+.+.++++.+...+++++..+...-......=+ +=.++.+.. ++.++. ...-|..+.-++..++.
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el-e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL-EVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 456677888999998877899999999999999853222211111 113444444 666552 23555668889999998
Q ss_pred CCHHHHHHHHhCCc
Q 016714 359 GNRAQIQVHDSFHL 372 (384)
Q Consensus 359 ~~~~~i~~l~~~~~ 372 (384)
...-.++..++-.+
T Consensus 147 ~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 147 DPQFLVDLFVNYDC 160 (168)
T ss_pred ChhHHHHHHHHcCC
Confidence 55555555544443
No 405
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.71 E-value=2.3e+02 Score=21.25 Aligned_cols=70 Identities=19% Similarity=0.092 Sum_probs=44.2
Q ss_pred ChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 203 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 203 ~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
.+|.+.+.+.....++.+..+...++.|+..- ......+..++..+.......+. ...++-++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 46677777754667788888888899999863 23333334444444444333333 477888888877543
No 406
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=29.14 E-value=3.7e+02 Score=25.45 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=37.6
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhhCCCCchhhH
Q 016714 150 SEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVAGDSPSCRDL 197 (384)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (384)
+...+..++...+-.|+.++.++++.-++..-.+|.++.+.-...|..
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~f 214 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPF 214 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455566777788999999999999999999988898887755444443
No 407
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=28.32 E-value=4.9e+02 Score=24.16 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHH-hcccchhH----HHHHHHH
Q 016714 152 HTRVVIEHGAVPMFVQLLSS-GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQ-LNEHSKLS----MLRNATW 225 (384)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~-l~~~~~~~----~~~~a~~ 225 (384)
+.+.+.+..++..|+.+-.. .++.++..++..+.++.+.... ..+....+..++.++ +..+.... +-...+.
T Consensus 1 ClEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~--plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~ 78 (353)
T PF10257_consen 1 CLEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ--PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVE 78 (353)
T ss_pred ChHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc--ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHH
Q ss_pred HHhhhhcC------------CCCCCh------------------hhhhchHHHHHHhhccCC--HhHHHHHHHHHHHhcc
Q 016714 226 TLSNFCRG------------KPPTPF------------------EQVKPALPILQRLIHLND--EEVLTDACWALSYLSD 273 (384)
Q Consensus 226 ~L~~L~~~------------~~~~~~------------------~~~~~~~~~L~~lL~~~~--~~i~~~a~~~l~~l~~ 273 (384)
.|..+|.. .+.... .....++..|+.++++.. .+...+++-.+..++.
T Consensus 79 lL~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg~ig~~Are~LLll~~l~~ 158 (353)
T PF10257_consen 79 LLNTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEGRIGDFAREGLLLLMSLAS 158 (353)
T ss_pred HHHHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCC
Q ss_pred CChHHHHHHHH-cCChHHHHHhc
Q 016714 274 GPNDKIQAVIE-AGVCPRLVELL 295 (384)
Q Consensus 274 ~~~~~~~~~~~-~g~~~~L~~lL 295 (384)
.++...+.+++ ..+.+.+..-|
T Consensus 159 ~~~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 159 EDPALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred CCcHHHHHHHHcchhHHHHHHHH
No 408
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.01 E-value=4.6e+02 Score=23.75 Aligned_cols=130 Identities=17% Similarity=0.094 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChH
Q 016714 132 PQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS------GSDDVREQAVWALGNVAGDSPSCRDLVLSSGALM 205 (384)
Q Consensus 132 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~ 205 (384)
.+.+..|+.+|.+=+. . ...+|+++.++.. .+..+....+...+.+..+..-+-+--+ +..+|
T Consensus 212 ~~~r~aAl~sLr~dsG-----l-----hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~-hqlmP 280 (450)
T COG5095 212 EQTRDAALESLRNDSG-----L-----HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL-HQLMP 280 (450)
T ss_pred HHHHHHHHHHhccCcc-----H-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH-HHHHH
Confidence 5666666666654222 0 1357888887764 3334444444344444333221111111 11455
Q ss_pred HHHHHhc-----ccc----hhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHH-hhccCC-HhHHHHHHHHHHHhc
Q 016714 206 PLLAQLN-----EHS----KLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQR-LIHLND-EEVLTDACWALSYLS 272 (384)
Q Consensus 206 ~L~~~l~-----~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~-lL~~~~-~~i~~~a~~~l~~l~ 272 (384)
.++.++. ..+ ...++.-|+..+...|..-+..-......+...+.+ +|..+. .....-|+.+++-+.
T Consensus 281 SilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 281 SILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 5555442 111 123666677777777765432222222223333332 233222 334555555665554
No 409
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=63 Score=32.02 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHhhhHHHHhhhhc
Q 016714 27 RRREDNLVEIRKNKREDNLLKKRRE 51 (384)
Q Consensus 27 ~~r~~~~~~lRk~kr~~~l~~kR~~ 51 (384)
-.|+..+.+||++||++.+..+|..
T Consensus 50 ~~rrn~akqlr~qk~~~v~e~~~~~ 74 (754)
T KOG1980|consen 50 LQRRNQAKQLRKQKREDVLENTRLL 74 (754)
T ss_pred HHHHhHHHHHHHhHHHHHHHhhhhc
Confidence 3778899999999999999998865
No 410
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=27.53 E-value=5.4e+02 Score=24.42 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=40.0
Q ss_pred HHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhc
Q 016714 110 IDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLS 170 (384)
Q Consensus 110 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~ 170 (384)
.+..++...+-.|+++.++.| |.-+...-.+|.+|-..-...+..+.. +.=..+..++.
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIy 228 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIY 228 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcc
Confidence 445778889999999999998 888888888888886643444444332 33334444443
No 411
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=26.98 E-value=5.8e+02 Score=24.58 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 016714 88 PALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQ 167 (384)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~ 167 (384)
...+..|+++|..+++.-..+....+.+ +.|+.+|++.. ..-|..|+-++...+...........-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3567789999998887543344433322 26888998887 566777788888877643322111101123455666
Q ss_pred hhcC
Q 016714 168 LLSS 171 (384)
Q Consensus 168 lL~~ 171 (384)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 6663
No 412
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=26.53 E-value=38 Score=32.57 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=52.2
Q ss_pred chHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhh
Q 016714 244 PALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIV 314 (384)
Q Consensus 244 ~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (384)
.....+-.+..+.++++...+..++++++.+...+...+.+..+...+++++..+.+.+-+.+.+++.-+.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 33445555567789999999999999999886655544455566778888888887777777777766554
No 413
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=26.28 E-value=3.5e+02 Score=21.83 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=40.9
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHhhh
Q 016714 118 VVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSGSDDVREQAVWALGNVA 188 (384)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (384)
-+...+..+..-+++.+....+.++.+....+.-..+... ..+|.+..+|.+..+.-...++.+|..+.
T Consensus 29 ~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~ 97 (164)
T PF13925_consen 29 DIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQSKYESYISVALEMLRSIL 97 (164)
T ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3444444333222256666666666654443332222222 36788999999988888888887777765
No 414
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=25.49 E-value=56 Score=18.85 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 016714 345 IKKEACWTISNITAGNRAQIQVHD 368 (384)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~i~~l~ 368 (384)
+--.+.|++.||..---+|.+.+.
T Consensus 12 il~A~gWa~fNIg~~Al~Q~~~~~ 35 (36)
T PF06298_consen 12 ILPAAGWALFNIGRAALNQLQRML 35 (36)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Confidence 345678999999876666666654
No 415
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=25.31 E-value=1.7e+02 Score=17.88 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=19.9
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 016714 290 RLVELLMHPSATVLIPALRTVGNIVTGDDAQTQF 323 (384)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 323 (384)
.++++|.+.++..+...+.+|+.+...+++..+.
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHh
Confidence 4566676666667777778888887776665543
No 416
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.19 E-value=4.6e+02 Score=26.18 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhhcCC-CCCChhhhhchHH-HHHHhhccCCHhHHHHHHHHHHHhccCC
Q 016714 217 LSMLRNATWTLSNFCRGK-PPTPFEQVKPALP-ILQRLIHLNDEEVLTDACWALSYLSDGP 275 (384)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~-~L~~lL~~~~~~i~~~a~~~l~~l~~~~ 275 (384)
..+.-.++..|+.+.... |......+.+.+. ....+|...++-+...|+.++++.+...
T Consensus 494 ~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 494 DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 335555556666555543 2222222222222 2334456677778888888888877654
No 417
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.07 E-value=9.9e+02 Score=26.68 Aligned_cols=115 Identities=11% Similarity=0.131 Sum_probs=70.3
Q ss_pred hhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 016714 242 VKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQT 321 (384)
Q Consensus 242 ~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 321 (384)
+.+++|.|-.-|.+++.+++..|...++.+.......... -...+....+.-+.+.+..++..++....++...++...
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~-~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE-TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 4677888888888999999999999999988765433210 011234444445556666777777666666544333221
Q ss_pred HHHH------------------------------HcC----chHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 322 QFVI------------------------------DNG----VLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 322 ~~i~------------------------------~~g----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
.... ... ++..+..-+.+. ...||++|...|..+-.
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDK-k~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDK-KIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 1100 111 344444445555 78899999888877664
No 418
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=7.6e+02 Score=25.09 Aligned_cols=106 Identities=15% Similarity=0.010 Sum_probs=50.1
Q ss_pred hHHHHHHhcccchhHHHHHHHHHHhhhhcCC-CCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHH
Q 016714 204 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAV 282 (384)
Q Consensus 204 i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~ 282 (384)
++.|++.-.....++.-..+..++..+--.. ..........+...+.++..+. ++..|+.+|.++--...+
T Consensus 495 i~~Lle~a~sGe~p~~s~~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f~~t---~rTlA~dIiL~~~P~~~~----- 566 (896)
T KOG4337|consen 495 IKNLLETAVSGEKPEQSMRATSALAEFFLRSICQTKKKIGAPITHQLIKLFRNT---TRTLAIDIILKCVPDHQN----- 566 (896)
T ss_pred HHHHHHHHhccCCcchhHHHHHHHHhcCchhhhHHHHHhcchHHHHHHHHHhcc---hhHHHHHHHHhcCccHHH-----
Confidence 4444444433334444445555544333221 0001111133333444444433 556666666665322111
Q ss_pred HHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 016714 283 IEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322 (384)
Q Consensus 283 ~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (384)
+..++-.|...+.+.....+.++-.+....|+...
T Consensus 567 -----v~n~ll~l~~~dqE~~~Y~l~~i~ml~~~~p~~ka 601 (896)
T KOG4337|consen 567 -----VANLLLTLNPDDQEKWHYLLKAIEMLSGNKPELKA 601 (896)
T ss_pred -----HHHHHHHhCCChHHHHHHHHHHHHHHhccCchHHH
Confidence 23334466666667777777777776665555443
No 419
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.88 E-value=4.8e+02 Score=23.64 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=56.2
Q ss_pred hcCCCHHHHHHHHHHHHhhhCCCCchhhHHHhcCChHHHHHHhccc-----chhHHHHHHHHHHhhhhcCCCCCChhhhh
Q 016714 169 LSSGSDDVREQAVWALGNVAGDSPSCRDLVLSSGALMPLLAQLNEH-----SKLSMLRNATWTLSNFCRGKPPTPFEQVK 243 (384)
Q Consensus 169 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~~l~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 243 (384)
+...+...+..|+.+|.+=++ ..+ .+|.++..+... .+.+.........+.|..+........+.
T Consensus 207 ~dEs~~~~r~aAl~sLr~dsG----lhQ------LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 207 LDESDEQTRDAALESLRNDSG----LHQ------LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHhccCcc----HHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 344567777778777765322 211 344555555221 24445555555566666654434445567
Q ss_pred chHHHHHHhhc-----cCCH-----hHHHHHHHHHHHhccCChHH
Q 016714 244 PALPILQRLIH-----LNDE-----EVLTDACWALSYLSDGPNDK 278 (384)
Q Consensus 244 ~~~~~L~~lL~-----~~~~-----~i~~~a~~~l~~l~~~~~~~ 278 (384)
.++|.++.++- +.+. .++.-|+..+.+.+..-...
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 88887766651 2222 26777888888887654433
No 420
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.82 E-value=1.2e+02 Score=29.29 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=51.9
Q ss_pred hHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHcCchHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 016714 288 CPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQFVIDNGVLPCLYQLLTQNHKKSIKKEACWTISNITA 358 (384)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 358 (384)
...+-.+..+.++.++..|..+++|++.+.......+-+..+-..++.++..+ .+.+-+.++.++.-+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 34444445678899999999999999987655544444555667788888888 78888888888877664
No 421
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.93 E-value=9.2e+02 Score=25.52 Aligned_cols=149 Identities=14% Similarity=0.193 Sum_probs=88.1
Q ss_pred HHHcCCHHHHHHhhc----CCC-Ch---HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHH
Q 016714 113 VIKAGVVPRFVEFLG----RHD-MP---QLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS-----GSDDVREQ 179 (384)
Q Consensus 113 ~~~~g~i~~Lv~lL~----~~~-~~---~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~ 179 (384)
+...|+...|++-|. .++ +| ..-+.++.++-.++.+-.+.- ...+|.+.....+ .++.+...
T Consensus 454 ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~-----~~~i~rl~~~~asik~S~~n~ql~~T 528 (982)
T KOG2022|consen 454 ILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE-----STWIPRLFETSASIKLSAPNPQLLST 528 (982)
T ss_pred HHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch-----hHHHHHHHHhccccccccCChhHHHH
Confidence 344556666655553 222 23 334555666666665422211 1236777766543 47888888
Q ss_pred HHHHHHhhh---CCCCchhhHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccC
Q 016714 180 AVWALGNVA---GDSPSCRDLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLN 256 (384)
Q Consensus 180 a~~~L~nl~---~~~~~~~~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~ 256 (384)
+...+|.++ ++.|.. -.-.++.|++-|. +.+.-..+...|..||+..+..-.....+++...-..+...
T Consensus 529 ss~~igs~s~~l~e~P~~-----ln~sl~~L~~~Lh---~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 529 SSDLIGSLSNWLGEHPMY-----LNPSLPLLFQGLH---NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHhcCCcc-----cCchHHHHHHHhc---CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 888887776 344421 1124666676662 33334455666889998765544445566666666666554
Q ss_pred C--HhHHHHHHHHHHHhccC
Q 016714 257 D--EEVLTDACWALSYLSDG 274 (384)
Q Consensus 257 ~--~~i~~~a~~~l~~l~~~ 274 (384)
+ +..+...+.+++|+...
T Consensus 601 ~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 601 NAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred ccCchHHHHHHHHHHHHHHh
Confidence 3 56788899999998764
No 422
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.45 E-value=3.3e+02 Score=20.14 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHhhhhcCCCCCChhhhhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 016714 215 SKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQRLIHLNDEEVLTDACWALSYLSDG 274 (384)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~ 274 (384)
+.+.+..-..|++.+.... ..++..+.+.+....+.-.-.++..+-.++.+
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn 67 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKN 67 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHH
Confidence 3445555666666655322 34555555555555555455555555555544
No 423
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=22.42 E-value=1.5e+02 Score=23.52 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=41.1
Q ss_pred HcCCHHHHHHhhcCCC-------------ChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC
Q 016714 115 KAGVVPRFVEFLGRHD-------------MPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS 171 (384)
Q Consensus 115 ~~g~i~~Lv~lL~~~~-------------~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~ 171 (384)
+.-+|..+-.+|.... --.++.+|+..|..++..............+++.|+..|..
T Consensus 78 e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 78 ENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 3456667777665421 03689999999999999766666666667889999988764
No 424
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=22.25 E-value=2e+02 Score=19.79 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=26.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 016714 75 SIPSMVQGVWSEDPALQLEATTQFRKLLS 103 (384)
Q Consensus 75 ~l~~lv~~l~s~~~~~~~~a~~~l~~l~s 103 (384)
+|++++.+..|..+..+..|++.|.+++.
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~ 68 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILY 68 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999998875
No 425
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=22.05 E-value=3.3e+02 Score=30.70 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=55.7
Q ss_pred hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 016714 243 KPALPILQRLIHLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSATVLIPALRTVGNIVTGDDAQTQ 322 (384)
Q Consensus 243 ~~~~~~L~~lL~~~~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (384)
..++..|+..+.+.+..-...|+..|..|+.......... +..+..++.++..=+..-......+++.++........
T Consensus 472 qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s 549 (1426)
T PF14631_consen 472 QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSS 549 (1426)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccch
Confidence 4566666666655555555677888888876544333221 22344444444444444455667778877753322111
Q ss_pred HHHHcCchHHHHHHhccCCchhHHHH----HHHHHHHHhc
Q 016714 323 FVIDNGVLPCLYQLLTQNHKKSIKKE----ACWTISNITA 358 (384)
Q Consensus 323 ~i~~~g~l~~L~~ll~~~~~~~v~~~----a~~~L~nl~~ 358 (384)
. +...+.-.+.+.|.++ +...++- |+..+..+++
T Consensus 550 ~-i~del~ivIRKQLss~-~~~~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 550 S-IQDELHIVIRKQLSSS-NPKYKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp H-HHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHHTT-
T ss_pred h-hHHHHHHHHHHhhcCC-cHHHHHHhHHHHHHHHHHHHH
Confidence 1 2223444466667666 6666654 4455555554
No 426
>PF13606 Ank_3: Ankyrin repeat
Probab=20.71 E-value=83 Score=16.96 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=12.3
Q ss_pred CCHHHHHHHHhCCc
Q 016714 359 GNRAQIQVHDSFHL 372 (384)
Q Consensus 359 ~~~~~i~~l~~~~~ 372 (384)
|+.+.++.|+++|+
T Consensus 13 g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 13 GNIEIVKYLLEHGA 26 (30)
T ss_pred CCHHHHHHHHHcCC
Confidence 88999999999885
No 427
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=20.41 E-value=1.6e+02 Score=17.38 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=11.2
Q ss_pred HHHHHhHHHHHHHHHHHh
Q 016714 23 DEARRRREDNLVEIRKNK 40 (384)
Q Consensus 23 ~~~r~~r~~~~~~lRk~k 40 (384)
-+.|..|++....||+-.
T Consensus 4 peQ~qHRE~qL~tlr~mq 21 (40)
T PF11502_consen 4 PEQRQHRERQLATLRDMQ 21 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677777666666543
No 428
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=1.3e+03 Score=26.32 Aligned_cols=200 Identities=11% Similarity=0.094 Sum_probs=108.7
Q ss_pred HHHHcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHH---H
Q 016714 112 EVIKAGVVPRFVEFLGRHDMPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSS----GSDDVREQAVWA---L 184 (384)
Q Consensus 112 ~~~~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~---L 184 (384)
.+++.|..-.+..-+++.+ +.++..|.|++...-.+-..-.+.....-.+-.++.+.++ +++.+-..+.-. .
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D-~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~ 1512 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDD-PSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFF 1512 (1758)
T ss_pred hhhhcccHHHHhhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHH
Confidence 6778899999999999888 9999999999876655422212333333345555555543 333333322222 1
Q ss_pred HhhhCCC-Cchh---------hHHHhcCChHHHHHHhcccchhHHHHHHHHHHhhhhcCC---CCCChhhhhchHHHHHH
Q 016714 185 GNVAGDS-PSCR---------DLVLSSGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK---PPTPFEQVKPALPILQR 251 (384)
Q Consensus 185 ~nl~~~~-~~~~---------~~i~~~g~i~~L~~~l~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~~~~L~~ 251 (384)
.+++.++ .... ...++..++|.+-+.+ .+...+....--|.+.-+..+- +........+.+..+..
T Consensus 1513 ~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ff-ySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~ls 1591 (1758)
T KOG1791|consen 1513 SDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFF-YSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLS 1591 (1758)
T ss_pred HHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHH-HhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeeh
Confidence 2223222 1111 1223344566565665 4443333334445444443332 22222233555555555
Q ss_pred hhccC--CHhHHHHHHHHHHHhccCChHHHHHHHHcCChHHHHHhcCCC--ChhhHHH-HHHHHHHh
Q 016714 252 LIHLN--DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHP--SATVLIP-ALRTVGNI 313 (384)
Q Consensus 252 lL~~~--~~~i~~~a~~~l~~l~~~~~~~~~~~~~~g~~~~L~~lL~~~--~~~v~~~-a~~~l~nl 313 (384)
...++ +.+.+...+.+|++-...+......+...|+..-+..++.+. .+..... .+.++.++
T Consensus 1592 f~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1592 FYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred hhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 55553 344455666777777666666676777789999999999765 3333333 34444444
No 429
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=20.12 E-value=96 Score=18.44 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHh
Q 016714 345 IKKEACWTISNITAGNRAQIQVHDS 369 (384)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~i~~l~~ 369 (384)
+--.+.|++.||..---+|.+.+.+
T Consensus 12 il~A~~Wa~fNIg~~Al~Q~q~~~~ 36 (40)
T PRK13240 12 ILAAAGWAVFNIGKAAREQFQRFLN 36 (40)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4456889999999877777777764
No 430
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=20.03 E-value=2e+02 Score=19.05 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHhhh
Q 016714 23 DEARRRREDNLVEIRKNKREDNLLKKR 49 (384)
Q Consensus 23 ~~~r~~r~~~~~~lRk~kr~~~l~~kR 49 (384)
+..++||.-.+...|+..|+..+.+-.
T Consensus 36 ~sv~qrr~iL~~v~r~~aReaR~~~aq 62 (67)
T COG3114 36 HSVLQRRAILRGVARQRAREARLRAAQ 62 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666767777788888888876644
Done!